Citrus Sinensis ID: 037488
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 628 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGP4 | 1010 | Probable LRR receptor-lik | yes | no | 0.785 | 0.488 | 0.364 | 6e-79 | |
| C0LGT6 | 1031 | LRR receptor-like serine/ | no | no | 0.785 | 0.478 | 0.347 | 2e-75 | |
| Q9SD62 | 1025 | Putative receptor-like pr | no | no | 0.769 | 0.471 | 0.347 | 3e-70 | |
| Q9ZUI0 | 980 | Putative leucine-rich rep | no | no | 0.783 | 0.502 | 0.332 | 2e-67 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.757 | 0.405 | 0.319 | 8e-58 | |
| O49318 | 1124 | Probable leucine-rich rep | no | no | 0.773 | 0.432 | 0.294 | 8e-57 | |
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.753 | 0.484 | 0.311 | 7e-56 | |
| Q8VZG8 | 1045 | Probable LRR receptor-lik | no | no | 0.716 | 0.430 | 0.312 | 1e-54 | |
| Q6XAT2 | 967 | LRR receptor-like serine/ | no | no | 0.756 | 0.491 | 0.294 | 2e-54 | |
| C0LGV1 | 1135 | LRR receptor-like serine/ | no | no | 0.574 | 0.318 | 0.380 | 2e-54 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 295 bits (756), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 203/557 (36%), Positives = 296/557 (53%), Gaps = 64/557 (11%)
Query: 6 NKLVGVVPTTIFNVSTLNSLYLQ------------NVQLQNLEELLLWGNNFSGTIPSFI 53
N GV P ++N+S+L L + + L NL + GN F+G+IP+ +
Sbjct: 220 NNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTL 279
Query: 54 FNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTS-STPKLNFLSSLSNCKYL 112
N S L RL + N+ G IP TFGN+ NL L L+ N L S S+ L FL+SL+NC L
Sbjct: 280 SNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQL 338
Query: 113 KYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLN 172
+ N L G LP +I NLS + + ISG IP +I NL NL + L N L+
Sbjct: 339 ETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLS 398
Query: 173 GSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTN 232
G +P +LGKL L+ L+L N+L G IP + + L LDL +N G VP S GN ++
Sbjct: 399 GPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCSH 458
Query: 233 LRSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFS 291
L L +G N++ +IP ++ ++ +L L++S N G LP +IG L+ L + L N S
Sbjct: 459 LLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLGDNKLS 518
Query: 292 GVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLD 351
G +P T+G ++ LFLE N G IPD G L+ +K +DLSNN+LSG IP
Sbjct: 519 GKLPQTLGNCLTMESLFLEGNLFYGDIPDLKG-LVGVKEVDLSNNDLSGSIPEYFASFSK 577
Query: 352 LKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLC-GMPNLQVPPCRTRI-----HHTS 405
L+ +N+SFN LEG++P +G F N S GN LC G+ Q+ PC ++ H+S
Sbjct: 578 LEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMGFQLKPCLSQAPSVVKKHSS 637
Query: 406 RKNGLLIGI-----------------------------------------RRLTYLELFQ 424
R ++IG+ +++Y +L
Sbjct: 638 RLKKVVIGVSVGITLLLLLFMASVTLIWLRKRKKNKETNNPTPSTLEVLHEKISYGDLRN 697
Query: 425 ATNGFSENNLIDRGGIGYVYKRRIHYGME-VAVKVFDLQYREAFKNFDIECDMMKHIRHR 483
ATNGFS +N++ G G VYK + + VAVKV ++Q R A K+F EC+ +K IRHR
Sbjct: 698 ATNGFSSSNMVGSGSFGTVYKALLLTEKKVVAVKVLNMQRRGAMKSFMAECESLKDIRHR 757
Query: 484 NLIKIISSCSNDDFKAD 500
NL+K++++CS+ DF+ +
Sbjct: 758 NLVKLLTACSSIDFQGN 774
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 283 bits (725), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 197/567 (34%), Positives = 292/567 (51%), Gaps = 74/567 (13%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQ-NLEELLLWG-----------NNFSGTIPS 51
+ N G P ++N+S+L SL L + NL + N F+G IP
Sbjct: 225 ALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPK 284
Query: 52 FIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKL-NFLSSLSNCK 110
+ N S L R ++ N G IP +FG LRNL LG+ +N L +++ F+ +++NC
Sbjct: 285 TLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIGAVANCT 344
Query: 111 YLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNK 170
L+Y N L G LP +I NLS ++ ++ ISG IP +I NL +L + L N
Sbjct: 345 QLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNM 404
Query: 171 LNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNL 230
L+G +P++ GKL LQ+++L N + G IP + L +L L SN G +P S G
Sbjct: 405 LSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRC 464
Query: 231 TNLRSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNN 289
L L + +N++ +IP +L + + Y++LS+NF TG P E+G L++L+ + S N
Sbjct: 465 RYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFPEEVGKLELLVGLGASYNK 524
Query: 290 FSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKL 349
SG +P IG +++LF++ N G+IPD I L++LK++D SNNNLSG IP L L
Sbjct: 525 LSGKMPQAIGGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNLSGRIPRYLASL 583
Query: 350 LDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLC-GMPNLQVPPCRTRIHHTSRK- 407
L+++N+S NK EG +P G FRN A S GN +C G+ +Q+ PC + RK
Sbjct: 584 PSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGVREMQLKPCIVQASPRKRKP 643
Query: 408 --------NGLLIGI---------------------------------------RRLTYL 420
+G+ IGI +++Y
Sbjct: 644 LSVRKKVVSGICIGIASLLLIIIVASLCWFMKRKKKNNASDGNPSDSTTLGMFHEKVSYE 703
Query: 421 ELFQATNGFSENNLIDRGGIGYVYKRRIHYGME---VAVKVFDLQYREAFKNFDIECDMM 477
EL AT+ FS NLI G G V+K + G E VAVKV +L A K+F EC+
Sbjct: 704 ELHSATSRFSSTNLIGSGNFGNVFKGLL--GPENKLVAVKVLNLLKHGATKSFMAECETF 761
Query: 478 KHIRHRNLIKIISSCSN-----DDFKA 499
K IRHRNL+K+I+ CS+ +DF+A
Sbjct: 762 KGIRHRNLVKLITVCSSLDSEGNDFRA 788
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (681), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 199/573 (34%), Positives = 289/573 (50%), Gaps = 90/573 (15%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTI-PSFIFNASKLSRL 62
+ NK GV P I+N+S+L ++L + GN+FSGT+ P F L L
Sbjct: 233 ALNKFNGVFPPPIYNLSSL--IFLS-----------ITGNSFSGTLRPDFGSLLPNLQIL 279
Query: 63 ELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTP------------------------ 98
+ +NSF G IP T N+ +L +L + N+LT P
Sbjct: 280 YMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSS 339
Query: 99 -KLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISN 157
L+FL +L+NC L+Y + N L G LP I NLS + + ISG IP I N
Sbjct: 340 GDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGN 399
Query: 158 LTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSN 217
L +L + LG N L G +P +LG+L +L+ + L N L G IP L ++ L L L +N
Sbjct: 400 LVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNN 459
Query: 218 KLSGFVPASFGNLTNLRSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGN 276
G +P+S G+ + L L+LG+N++ SIP L+ L ++ LN+S N GPL +IG
Sbjct: 460 SFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVVLNVSFNLLVGPLRQDIGK 519
Query: 277 LKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNN 336
LK L+ +D+S N SG IP T+ L++L L+ N G IPD I L L+ LDLS N
Sbjct: 520 LKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPD-IRGLTGLRFLDLSKN 578
Query: 337 NLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLC-GMPNLQVP 395
NLSG IP + L+++N+S N +G +P EG FRN A S GN LC G+P+LQ+
Sbjct: 579 NLSGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIPSLQLQ 638
Query: 396 PCRTRI--HHTSRKNGLLIGI--------------------------------------- 414
PC + H+S + + I +
Sbjct: 639 PCSVELPRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRANNNENDRSFS 698
Query: 415 ------RRLTYLELFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAF 467
+++Y EL++ T GFS +NLI G G V+K + VA+KV +L R A
Sbjct: 699 PVKSFYEKISYDELYKTTGGFSSSNLIGSGNFGAVFKGFLGSKNKAVAIKVLNLCKRGAA 758
Query: 468 KNFDIECDMMKHIRHRNLIKIISSCSNDDFKAD 500
K+F EC+ + IRHRNL+K+++ CS+ DF+ +
Sbjct: 759 KSFIAECEALGGIRHRNLVKLVTICSSSDFEGN 791
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (657), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 195/586 (33%), Positives = 280/586 (47%), Gaps = 94/586 (16%)
Query: 6 NKLVGVVPTTIF---NVSTLNSLYLQN------------VQLQNLEELLLWGNNFSGTIP 50
N+L G +P +F + S+L + L N L+ L LLLW N +GT+P
Sbjct: 149 NRLNGSIPVQLFCNGSSSSLQYIDLSNNSLTGEIPLNYHCHLKELRFLLLWSNKLTGTVP 208
Query: 51 SFIFNASKLSRLELQMNSFYGFIPN-TFGNLRNLNRLGLNDNYLTSSTPKLN---FLSSL 106
S + N++ L ++L+ N G +P+ + L L L+ N+ S N F +SL
Sbjct: 209 SSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYLSYNHFVSHNNNTNLEPFFASL 268
Query: 107 SNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEI----------- 155
+N L+ + NSL G + ++ +LS ++ + I G IP EI
Sbjct: 269 ANSSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLDQNRIHGSIPPEISNLLNLTLLNL 328
Query: 156 -------------SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDD 202
L+ L +YL N L G IP+ LG + +L LL++ N L GSIPD
Sbjct: 329 SSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRNNLSGSIPDS 388
Query: 203 LCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT-SIP----STLLNLKDIL 257
L+ L +L L N LSG VP S G NL L L N +T +IP S L NLK L
Sbjct: 389 FGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRNLK--L 446
Query: 258 YLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGS 317
YLNLSSN +GP+PLE+ + +++ +DLS N SG IP +G L++L L N +
Sbjct: 447 YLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGFSST 506
Query: 318 IPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLA 377
+P S+G L LK LD+S N L+G IP S ++ LK +N SFN L G + +GSF
Sbjct: 507 LPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLSGNVSDKGSFSKLTI 566
Query: 378 ESFKGNELLC-----------------------------------GMPNLQVPP------ 396
ESF G+ LLC G P +Q
Sbjct: 567 ESFLGDSLLCGSIKGMQACKKKHKYPSVLLPVLLSLIATPVLCVFGYPLVQRSRFGKNLT 626
Query: 397 --CRTRIHHTSRKNGLLIGIRRLTYLELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEV 454
+ + ++N R++Y +L AT GF+ ++LI G G+VYK + +V
Sbjct: 627 VYAKEEVEDEEKQNQNDPKYPRISYQQLIAATGGFNASSLIGSGRFGHVYKGVLRNNTKV 686
Query: 455 AVKVFDLQYREAFK-NFDIECDMMKHIRHRNLIKIISSCSNDDFKA 499
AVKV D + F +F EC ++K RHRNLI+II++CS F A
Sbjct: 687 AVKVLDPKTALEFSGSFKRECQILKRTRHRNLIRIITTCSKPGFNA 732
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 225 bits (573), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 185/579 (31%), Positives = 273/579 (47%), Gaps = 103/579 (17%)
Query: 6 NKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQ 65
N L G +P++I N + L L L + N +G IP F L+ + +
Sbjct: 394 NLLTGPIPSSISNCTGLKLLDLSH-------------NQMTGEIPRG-FGRMNLTFISIG 439
Query: 66 MNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGI 125
N F G IP+ N NL L + DN LT + L + + L+ S NSL G
Sbjct: 440 RNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPL-----IGKLQKLRILQVSYNSLTGP 494
Query: 126 LPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKL 185
+PR IGNL + + I ++HS +G IP E+SNLT L + + N L G IP + ++ L
Sbjct: 495 IPREIGNL-KDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLL 553
Query: 186 QLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT- 244
+L+L N+ G IP +L +L L L NK +G +PAS +L+ L + + N +T
Sbjct: 554 SVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTG 613
Query: 245 SIPSTLL-NLKDI-LYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLK 302
+IP LL +LK++ LYLN S+N TG +P E+G L+++ +IDLS N FSG IP ++ K
Sbjct: 614 TIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACK 673
Query: 303 DLQYLFLEYNRLQGSIPD-------------------------SIGDLINLKSLDLSNNN 337
++ L N L G IPD S G++ +L SLDLS+NN
Sbjct: 674 NVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNN 733
Query: 338 LSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPC 397
L+G IP SL L LK + ++ N L+G +P G F+N A GN LCG + PC
Sbjct: 734 LTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKK-PLKPC 792
Query: 398 RTR---IHHTSRKNGLLI------------------------------------------ 412
+ H + R +LI
Sbjct: 793 TIKQKSSHFSKRTRVILIILGSAAALLLVLLLVLILTCCKKKEKKIENSSESSLPDLDSA 852
Query: 413 -GIRRLTYLELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQ--YREAFKN 469
++R EL QAT+ F+ N+I + VYK ++ G +AVKV +L+ E+ K
Sbjct: 853 LKLKRFEPKELEQATDSFNSANIIGSSSLSTVYKGQLEDGTVIAVKVLNLKEFSAESDKW 912
Query: 470 FDIECDMMKHIRHRNLIKIISSCSNDDFKADFGMAKPLL 508
F E + ++HRNL+KI+ F + G K L+
Sbjct: 913 FYTEAKTLSQLKHRNLVKILG------FAWESGKTKALV 945
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (565), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 181/614 (29%), Positives = 266/614 (43%), Gaps = 128/614 (20%)
Query: 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQL-----------QNLEELLLWGNNFSGTI 49
+A N LVG +P+ I N+ +L LYL QL + E+ N SG I
Sbjct: 282 LALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEI 341
Query: 50 PSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNC 109
P + S+L L L N G IPN LRNL +L L+ N LT P N
Sbjct: 342 PVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPP-----GFQNL 396
Query: 110 KYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGN 169
++ +NSL G++P+ +G L + + +SG IP I +NLI + LG N
Sbjct: 397 TSMRQLQLFHNSLSGVIPQGLG-LYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSN 455
Query: 170 KLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGN 229
++ G+IP + + + L L + N+L G P +LC+L L ++L N+ SG +P G
Sbjct: 456 RIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGT 515
Query: 230 LTNLRSLHLGSNQITS-IPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMN 288
L+ LHL +NQ +S +P+ + L +++ N+SSN TGP+P EI N K+L ++DLS N
Sbjct: 516 CQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRN 575
Query: 289 NFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLD---------------- 332
+F G +P +G L L+ L L NR G+IP +IG+L +L L
Sbjct: 576 SFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGL 635
Query: 333 ---------------------------------LSNNNLSGIIPISLEKLLDLKDINVSF 359
L+NN+LSG IP + E L L N S+
Sbjct: 636 LSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSY 695
Query: 360 NKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPCRTRIHH-TSRKNG--------- 409
N L G++P F+N SF GN+ LCG P + H +S K G
Sbjct: 696 NNLTGQLPHTQIFQNMTLTSFLGNKGLCGGHLRSCDPSHSSWPHISSLKAGSARRGRIII 755
Query: 410 -----------LLIGI---------------------------------RRLTYLELFQA 425
LLI I R T ++ +A
Sbjct: 756 IVSSVIGGISLLLIAIVVHFLRNPVEPTAPYVHDKEPFFQESDIYFVPKERFTVKDILEA 815
Query: 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFD-------LQYREAFKNFDIECDMMK 478
T GF ++ ++ RG G VYK + G +AVK + +F E +
Sbjct: 816 TKGFHDSYIVGRGACGTVYKAVMPSGKTIAVKKLESNREGNNNNSNNTDNSFRAEILTLG 875
Query: 479 HIRHRNLIKIISSC 492
IRHRN++++ S C
Sbjct: 876 KIRHRNIVRLYSFC 889
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (557), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 177/568 (31%), Positives = 256/568 (45%), Gaps = 95/568 (16%)
Query: 6 NKLVGVVPTTIFNVSTLNSLYL-QNVQLQNLEELLLW----------GNNFSGTIPSFIF 54
N+L+G +P+T+ + L L L QN + L+ W GNN G I +
Sbjct: 150 NQLIGPIPSTLSQIPNLKILDLAQNKLSGEIPRLIYWNEVLQYLGLRGNNLVGNISPDLC 209
Query: 55 NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTP-KLNFLSSLSNCKYLK 113
+ L +++ NS G IP T GN L L+ N LT P + FL +
Sbjct: 210 QLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSYNQLTGEIPFDIGFLQ-------VA 262
Query: 114 YFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNG 173
S N L G +P IG L Q++ + + +SG IP + NLT +YL NKL G
Sbjct: 263 TLSLQGNQLSGKIPSVIG-LMQALAVLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTG 321
Query: 174 SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNL 233
SIP LG + KL L L N L G IP +L +L LF L++ +N L G +P + TNL
Sbjct: 322 SIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHLSSCTNL 381
Query: 234 RSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSG 292
SL++ N+ + +IP L+ + YLNLSSN GP+P+E+ + L +DLS N +G
Sbjct: 382 NSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKING 441
Query: 293 VIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKL--- 349
+IP ++G L+ L + L N + G +P G+L ++ +DLSNN++SG IP L +L
Sbjct: 442 IIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIPEELNQLQNI 501
Query: 350 --------------------LDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGM 389
L L +NVS N L G+IP+ +F F +SF GN LCG
Sbjct: 502 ILLRLENNNLTGNVGSLANCLSLTVLNVSHNNLVGDIPKNNNFSRFSPDSFIGNPGLCG- 560
Query: 390 PNLQVPPC----RTRIHHTSRKNGLLIGIRRL---------------------------- 417
+ PC RT SR L I I L
Sbjct: 561 -SWLNSPCHDSRRTVRVSISRAAILGIAIGGLVILLMVLIAACRPHNPPPFLDGSLDKPV 619
Query: 418 -----------------TYLELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFD 460
Y ++ + T SE +I G VYK + VA+K
Sbjct: 620 TYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGHGASSTVYKCVLKNCKPVAIKRLY 679
Query: 461 LQYREAFKNFDIECDMMKHIRHRNLIKI 488
++ K F+ E +M+ I+HRNL+ +
Sbjct: 680 SHNPQSMKQFETELEMLSSIKHRNLVSL 707
|
Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 172/551 (31%), Positives = 248/551 (45%), Gaps = 101/551 (18%)
Query: 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLS 60
+ S NKL G VP + ++ L L+L++ QL SG IP I N+++L+
Sbjct: 339 LEISENKLTGPVPDSFGKLTALEWLFLRDNQL-------------SGPIPPGIANSTELT 385
Query: 61 RLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNN 120
L+L N+F GF+P+T L L L+DN+ PK SL +CK L F N
Sbjct: 386 VLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPK-----SLRDCKSLIRVRFKGN 440
Query: 121 SLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALG 180
S SG I E L I L N +G +
Sbjct: 441 SF-------------------------SGDISEAFGVYPTLNFIDLSNNNFHGQLSANWE 475
Query: 181 KLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGS 240
+ QKL L N + G+IP ++ + L QLDL SN+++G +P S N+ + L L
Sbjct: 476 QSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNG 535
Query: 241 NQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIG 299
N+++ IPS + L ++ YL+LSSN F+ +P + NL L ++LS N+ IP +
Sbjct: 536 NRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLT 595
Query: 300 YLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSF 359
L LQ L L YN+L G I L NL+ LDLS+NNLSG IP S + +L L ++VS
Sbjct: 596 KLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSH 655
Query: 360 NKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQ--VPPCRTRIHHTSRKN--------- 408
N L+G IP +FRN ++F+GN+ LCG N + PC S K+
Sbjct: 656 NNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHKDRNLIIYILV 715
Query: 409 -------------GLLIGIRRLT--------------------------YLELFQATNGF 429
G+ I R+ T Y E+ +AT F
Sbjct: 716 PIIGAIIILSVCAGIFICFRKRTKQIEEHTDSESGGETLSIFSFDGKVRYQEIIKATGEF 775
Query: 430 SENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKN------FDIECDMMKHIRHR 483
LI GG G VYK ++ + +AVK + + N F E + IRHR
Sbjct: 776 DPKYLIGTGGHGKVYKAKLPNAI-MAVKKLNETTDSSISNPSTKQEFLNEIRALTEIRHR 834
Query: 484 NLIKIISSCSN 494
N++K+ CS+
Sbjct: 835 NVVKLFGFCSH 845
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 166/564 (29%), Positives = 261/564 (46%), Gaps = 89/564 (15%)
Query: 6 NKLVGVVPTTIFNVSTLNSLYLQNVQLQ-NLEELLLW----------GNNFSGTIPSFIF 54
N+L G +P T+ + L +L L QL + LL W GN +GT+ +
Sbjct: 155 NQLTGPIPATLTQIPNLKTLDLARNQLTGEIPRLLYWNEVLQYLGLRGNMLTGTLSPDMC 214
Query: 55 NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTP-KLNFLSSLSNCKYLK 113
+ L +++ N+ G IP + GN + L ++ N +T P + FL +
Sbjct: 215 QLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDVSYNQITGVIPYNIGFLQ-------VA 267
Query: 114 YFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNG 173
S N L G +P IG L Q++ + + ++G IP + NL+ +YL GNKL G
Sbjct: 268 TLSLQGNKLTGRIPEVIG-LMQALAVLDLSDNELTGPIPPILGNLSFTGKLYLHGNKLTG 326
Query: 174 SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNL 233
IP LG + +L L L N+L G IP +L +L LF+L+L +N L G +P++ + L
Sbjct: 327 QIPPELGNMSRLSYLQLNDNELVGKIPPELGKLEQLFELNLANNNLVGLIPSNISSCAAL 386
Query: 234 RSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSG 292
++ N ++ ++P NL + YLNLSSN F G +P E+G++ L +DLS NNFSG
Sbjct: 387 NQFNVHGNFLSGAVPLEFRNLGSLTYLNLSSNSFKGKIPAELGHIINLDTLDLSGNNFSG 446
Query: 293 VIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKL--- 349
IP+T+G L+ L L L N L G++P G+L +++ +D+S N L+G+IP L +L
Sbjct: 447 SIPLTLGDLEHLLILNLSRNHLNGTLPAEFGNLRSIQIIDVSFNFLAGVIPTELGQLQNI 506
Query: 350 ---------------------LDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCG 388
L ++N+SFN L G IP +F F SF GN LCG
Sbjct: 507 NSLILNNNKIHGKIPDQLTNCFSLANLNISFNNLSGIIPPMKNFTRFSPASFFGNPFLCG 566
Query: 389 -------MPNLQVPPCRTR--------------------IHHTSRKNGLLIGIRRL---- 417
P+L TR ++ + ++ +L G +
Sbjct: 567 NWVGSICGPSLPKSQVFTRVAVICMVLGFITLICMIFIAVYKSKQQKPVLKGSSKQPEGS 626
Query: 418 -------------TYLELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYR 464
T+ ++ + T E +I G VYK +A+K QY
Sbjct: 627 TKLVILHMDMAIHTFDDIMRVTENLDEKYIIGYGASSTVYKCTSKTSRPIAIKRIYNQYP 686
Query: 465 EAFKNFDIECDMMKHIRHRNLIKI 488
F+ F+ E + + IRHRN++ +
Sbjct: 687 SNFREFETELETIGSIRHRNIVSL 710
|
Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 147/386 (38%), Positives = 213/386 (55%), Gaps = 25/386 (6%)
Query: 8 LVGVVPTTIFNVSTLNSLYLQN-----------VQLQNLEELLLWGNNFSGTIPSFIFNA 56
L G +P + N S L +L+L + +LQNLE++LLW NN G IP I
Sbjct: 263 LSGEIPKELGNCSELINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGFM 322
Query: 57 SKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFS 116
L+ ++L MN F G IP +FGNL NL L L+ N +T S P + LSNC L F
Sbjct: 323 KSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITGSIPSI-----LSNCTKLVQFQ 377
Query: 117 FSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIP 176
N + G++P IG L + + IF + G IP+E++ NL A+ L N L GS+P
Sbjct: 378 IDANQISGLIPPEIG-LLKELNIFLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLP 436
Query: 177 IALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSL 236
L +L+ L L L N + G IP ++ +L +L L +N+++G +P G L NL L
Sbjct: 437 AGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFL 496
Query: 237 HLGSNQITS-IPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIP 295
L N ++ +P + N + + LNLS+N G LPL + +L L +D+S N+ +G IP
Sbjct: 497 DLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIP 556
Query: 296 ITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKD- 354
++G+L L L L N G IP S+G NL+ LDLS+NN+SG IP E+L D++D
Sbjct: 557 DSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIP---EELFDIQDL 613
Query: 355 ---INVSFNKLEGEIPREGSFRNFLA 377
+N+S+N L+G IP S N L+
Sbjct: 614 DIALNLSWNSLDGFIPERISALNRLS 639
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 628 | ||||||
| 147843440 | 868 | hypothetical protein VITISV_043680 [Viti | 0.985 | 0.713 | 0.458 | 1e-147 | |
| 255572272 | 1089 | serine-threonine protein kinase, plant-t | 0.996 | 0.574 | 0.412 | 1e-142 | |
| 224116832 | 1061 | predicted protein [Populus trichocarpa] | 0.996 | 0.590 | 0.418 | 1e-138 | |
| 359485451 | 1454 | PREDICTED: LRR receptor-like serine/thre | 0.996 | 0.430 | 0.419 | 1e-137 | |
| 359485453 | 1202 | PREDICTED: probable LRR receptor-like se | 0.990 | 0.517 | 0.423 | 1e-137 | |
| 147852480 | 1229 | hypothetical protein VITISV_039533 [Viti | 0.995 | 0.508 | 0.414 | 1e-136 | |
| 359483198 | 1087 | PREDICTED: probable LRR receptor-like se | 0.990 | 0.572 | 0.426 | 1e-135 | |
| 359483683 | 1228 | PREDICTED: LRR receptor-like serine/thre | 0.984 | 0.503 | 0.416 | 1e-135 | |
| 147769371 | 1241 | hypothetical protein VITISV_010511 [Viti | 0.995 | 0.503 | 0.413 | 1e-134 | |
| 298204751 | 1979 | unnamed protein product [Vitis vinifera] | 0.813 | 0.258 | 0.508 | 1e-134 |
| >gi|147843440|emb|CAN79970.1| hypothetical protein VITISV_043680 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 323/705 (45%), Positives = 420/705 (59%), Gaps = 86/705 (12%)
Query: 8 LVGVVPTTIFNVSTLNSLYLQ------------NVQLQNLEELLLWGNNFSGTIPSFIFN 55
L G+VP IFN+S L SL L L +LE L + GN FSG IP I N
Sbjct: 130 LTGIVPEAIFNISKLPSLSLVLNHLSGSLPSSIGTWLPDLEGLYIGGNQFSGIIPLSILN 189
Query: 56 ASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTS--STPKLNFLSSLSNCKYLK 113
SKL+ L++ +N F G++P GNLR L L L+ N L++ S +L FL+SL+NC L+
Sbjct: 190 MSKLTVLDISVNFFTGYVPKDLGNLRRLQYLSLSRNQLSNEHSDSELAFLTSLTNCNSLR 249
Query: 114 YFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNG 173
S N L GI+P ++GNLS S+E C + G IP IS LTNLI + L N L G
Sbjct: 250 NLWISGNPLKGIIPNSLGNLSISLESIVASGCQLRGTIPTGISYLTNLIDLRLDDNNLTG 309
Query: 174 SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNL 233
IP + G+LQKLQ+L NQ+ G IP LC LA L LDL SNKLSG +P FGNLT L
Sbjct: 310 LIPTSSGRLQKLQVLYFSQNQIHGPIPSGLCHLANLGFLDLSSNKLSGTIPGCFGNLTLL 369
Query: 234 RSLHLGSNQITS-IPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSG 292
R ++L SN + S +PS+L L+D+L LNLSSNF LPLE+GN+K L+ +DLS N FSG
Sbjct: 370 RGINLHSNGLASEVPSSLWTLRDLLVLNLSSNFLNSQLPLEVGNMKSLVVLDLSKNQFSG 429
Query: 293 VIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDL 352
IP TI L++L L L +N+LQG +P + GDL++L+ LDLS NNLSG IP SLE L L
Sbjct: 430 NIPSTISLLQNLVQLHLSHNKLQGHMPPNFGDLVSLEYLDLSGNNLSGSIPKSLEALKYL 489
Query: 353 KDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPCR--TRIHHTS----- 405
K +NVS NKL+ EIP G F NF AESF N LCG P QV C TR H S
Sbjct: 490 KYLNVSVNKLQREIPNGGPFANFTAESFISNLALCGAPRFQVMACEKDTRRHTKSLLLKC 549
Query: 406 -------------------RKN--------------GLLIGIRRL-TYLELFQATNGFSE 431
RK LL +R + ++ EL ATN F E
Sbjct: 550 IVPLAVSLSIIIVVVLFVLRKQRQTKSEALQVQVDLTLLPRMRPMISHQELLYATNYFDE 609
Query: 432 NNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISS 491
NLI +G +G VYK + G+ VAVKVF+++ + AFK+F++E ++M++IRHRNL KI +
Sbjct: 610 ENLIGKGSLGMVYKGVLSDGLIVAVKVFNVELQGAFKSFEVEYEVMQNIRHRNLAKITNV 669
Query: 492 CS-------------------------NDDFKA---DFGMAKPLLKEDQSLIQTQTLATI 523
S +DD A DFG+AK LL ++ + +T+TL TI
Sbjct: 670 ASGLEYLHHDYSNPVVHCDLKPSNILLDDDMVAHISDFGIAK-LLMGNEFMKRTKTLGTI 728
Query: 524 GYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMK 583
GYMAPEYG EG VST GD+YS+ IML+ETF RKKPTDE+F E+TLK WV ++M+
Sbjct: 729 GYMAPEYGSEGIVSTKGDIYSYRIMLMETFVRKKPTDEMFMEELTLKSWVESSTN-NIME 787
Query: 584 VVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
V+D +LL +ED++F +K C S + LA CT E P++R+N K++
Sbjct: 788 VIDVNLLIEEDENFALKQACFSSIRTLASDCTAEPPQKRINMKDV 832
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572272|ref|XP_002527075.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533580|gb|EEF35319.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 310/752 (41%), Positives = 417/752 (55%), Gaps = 126/752 (16%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQN------------VQLQNLEELLLWGNNFSGTIP 50
SFN L G +P +FN+ST+ + + + + L NL L L N SG IP
Sbjct: 319 LSFNNLNGSIPHALFNISTMKWIAMTSNNLLGNLPTSLGLHLPNLIWLYLGINKLSGPIP 378
Query: 51 SFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTS--STPKLNFLSSLSN 108
S+I NASKL+ LEL NSF GFIP++ G+LRNL L L N L+S ++ +L SSL N
Sbjct: 379 SYISNASKLTILELPSNSFTGFIPDSLGDLRNLQTLKLGANLLSSKKTSQELTIFSSLKN 438
Query: 109 CKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGG 168
C+ LKY S N LDG LP ++GNLS S+E F I G + E I NL++L + LG
Sbjct: 439 CQNLKYLWLSYNPLDGYLPHSVGNLSNSLESFLASDGLIKGSVHESIGNLSSLTRLNLGN 498
Query: 169 NKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFG 228
N L G IP +G L+ LQ L L N L+GSIP +LC L L+ L+L NKLSG +P F
Sbjct: 499 NDLTGRIPTTIGTLKHLQGLYLHGNDLDGSIPSELCDLRTLYNLELTGNKLSGSIPTCFS 558
Query: 229 NLTNLRSLHLGSNQ-ITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSM 287
NLT+LR+L L SN+ +++I STL LKDIL +NL+SN+ TG LP EI NL+ + I++S
Sbjct: 559 NLTSLRNLFLASNRFVSTISSTLWTLKDILQVNLASNYLTGSLPSEIENLRAVYMINISK 618
Query: 288 NNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLE 347
N SG IPI+IG L+DL L+L N+LQG IP S+GD+ +L+ LDLS+NNLSG+IP SL+
Sbjct: 619 NQLSGEIPISIGGLQDLAQLYLSGNKLQGPIPQSVGDIKSLEFLDLSSNNLSGMIPKSLD 678
Query: 348 KLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPCRTRIHHTSRK 407
LL LK NVSFN L+GEIP GSF NF A+SF GNE LCG LQV PC+ +
Sbjct: 679 NLLYLKYFNVSFNYLQGEIPEGGSFSNFSAQSFIGNEALCGSARLQVSPCKDDNSRATET 738
Query: 408 NG------------------------------------------LLIGIRRLTYLELFQA 425
G L IRR++Y EL A
Sbjct: 739 PGSKIVLRYVLPAIVFAVFVLAFVIMLKRYCERKAKFSIEDDFLALTTIRRISYHELQLA 798
Query: 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNL 485
TNGF E+N + G G VYK + G +A KVF+LQ AFK+FD EC++++++RHRNL
Sbjct: 799 TNGFQESNFLGMGSFGSVYKGTLSDGTVIAAKVFNLQLERAFKSFDTECEVLRNLRHRNL 858
Query: 486 IKIISSCSNDDFKA-------DFGMAKPLLKEDQSLIQTQTLATI------------GYM 526
+KII+SCS +FKA ++ + K L +D L Q L + GY
Sbjct: 859 VKIITSCSGPNFKALVLEFMPNWSLEKWLYSDDYFLNNLQRLNIMLDVASVLEYLHHGYT 918
Query: 527 APE----------------------------YGREGR----------------------V 536
P G EG V
Sbjct: 919 IPMAHCDIKPSNVLLNEDMVAFLADFGISKLLGEEGSVMQTMTLATIGYMAPEYGSEGIV 978
Query: 537 STNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596
S GDVYS+G++L+ETFT+KKPTD++F+ +++LK WV L V +V+DA+LL E+ H
Sbjct: 979 SVRGDVYSYGVLLMETFTQKKPTDKMFTEQLSLKSWVEQSLSCEVTQVIDANLLGIEEDH 1038
Query: 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
K C+ + LA++C+ + P +R++ K +
Sbjct: 1039 LAAKKDCIVSILKLALQCSADLPHDRIDMKHV 1070
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116832|ref|XP_002317405.1| predicted protein [Populus trichocarpa] gi|222860470|gb|EEE98017.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 315/753 (41%), Positives = 419/753 (55%), Gaps = 127/753 (16%)
Query: 1 MAFSFNKLVGVVPTTIFNVSTLNSL-----YLQN-------VQLQNLEELLLWGNNFSGT 48
+ FN + G +P+T FN S L + YL + L NLEEL L N SG
Sbjct: 288 LDLGFNNITGSIPSTFFNFSILRRVNMAYNYLSGHLPSNTGLGLPNLEELYLEKNELSGP 347
Query: 49 IPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLS- 107
IP I NASKL L+L NSF G IP+ GNLRNL +L L +N LTS + + S
Sbjct: 348 IPDSIGNASKLIVLDLSYNSFSGRIPDLLGNLRNLQKLNLAENILTSKSLRSELSFLSSL 407
Query: 108 -NCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYL 166
NC+ L Y F+ N L G LP +IGNLS S+E + C I G IP I NL+NLI + L
Sbjct: 408 SNCRSLAYLRFNGNPLRGRLPVSIGNLSASLEELYAFDCRIIGNIPRGIGNLSNLIGLIL 467
Query: 167 GGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPAS 226
N+L G+IP +G+L+ LQ +L N+L+G IP+++C L L L L N SG +PA
Sbjct: 468 QQNELTGAIPSEIGRLKHLQDFSLASNKLQGHIPNEICHLERLSYLYLLENGFSGSLPAC 527
Query: 227 FGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLS 286
N+T+LR L+LGSN+ TSIP+T +LKD+L +NLS N TG LPLEIGNLKV+ ID S
Sbjct: 528 LSNITSLRELYLGSNRFTSIPTTFWSLKDLLQINLSFNSLTGTLPLEIGNLKVVTVIDFS 587
Query: 287 MNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISL 346
N SG IP +I L++L + L NR+QG IP S GDL++L+ LDLS N+LSG IP SL
Sbjct: 588 SNQLSGDIPTSIADLQNLAHFSLSDNRMQGPIPSSFGDLVSLEFLDLSRNSLSGAIPKSL 647
Query: 347 EKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPCRTRIHHTSR 406
EKL+ LK NVSFN+L+GEI G F NF SF NE LCG +QVPPC++ H
Sbjct: 648 EKLVHLKTFNVSFNRLQGEILDGGPFANFSFRSFMDNEALCGPIRMQVPPCKSISTHRQS 707
Query: 407 KN--------------------GLLIGI---------------------RRLTYLELFQA 425
K L + I R+++Y EL++A
Sbjct: 708 KRPREFVIRYIVPAIAFIILVLALAVIIFRRSHKRKLSTQEDPLPPATWRKISYHELYRA 767
Query: 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQ-------------------YREA 466
T GF+E NL+ G G VYK + G+ +AVKVF LQ +R
Sbjct: 768 TEGFNETNLLGTGSCGSVYKGTLSDGLCIAVKVFHLQLEGELMRFDSECEVLRMLRHRNL 827
Query: 467 FK------NFDIECDMMKHIRHRNLIKIISS---------------------------CS 493
K N D + +++ I H +L K + S C+
Sbjct: 828 VKIISSCCNLDFKALILEFIPHGSLEKWLYSHNYYLDILQRLNIMIDVASALEYLHHGCT 887
Query: 494 ---------------NDDFKA---DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535
N+D A DFG+++ LL E ++ QT TLATIGYMAPEYG EG
Sbjct: 888 RPVVHCDLKPSNVLINEDMVAHVSDFGISR-LLGEGDAVTQTLTLATIGYMAPEYGLEGI 946
Query: 536 VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595
VS GDVYS+GI L+ETFTRKKPTD++F GEM+LK+WV LP ++ +V+DA+LL +E+
Sbjct: 947 VSVKGDVYSYGIFLMETFTRKKPTDDMFGGEMSLKNWVKQSLPKAITEVIDANLLIEEE- 1005
Query: 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
HFV K C++ + NLA++C+ + P ER+ +++
Sbjct: 1006 HFVAKKDCITSILNLALECSADLPGERICMRDV 1038
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485451|ref|XP_002276944.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 316/753 (41%), Positives = 421/753 (55%), Gaps = 127/753 (16%)
Query: 1 MAFSFNKLVGVVPTTIFNVSTLNSLYL-QN-----------VQLQNLEELLLWGNNFSGT 48
+ S N L G++P IFN+S L SL L QN QL +LE L + N FSG
Sbjct: 691 LKLSENNLTGIIPEAIFNISKLQSLSLAQNHFSGSLPSSLGTQLPDLEGLAIGRNEFSGI 750
Query: 49 IPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTS--STPKLNFLSSL 106
IP I N S+L+ L++ N F G +P GNLR L L L N LT S ++ FL+SL
Sbjct: 751 IPMSISNMSELTELDIWDNFFTGDVPKDLGNLRRLEFLNLGSNQLTDEHSASEVGFLTSL 810
Query: 107 SNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYL 166
+NC +L+ +N L GILP ++GNLS S+E F +C G IP I NLT+LI++ L
Sbjct: 811 TNCNFLRTLWIEDNPLKGILPNSLGNLSISLESFDASACQFRGTIPTGIGNLTSLISLEL 870
Query: 167 GGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPAS 226
G N L G IP LG+L+KLQ L + N+L GSIP+DLCRL L L L SN+L+G +P+
Sbjct: 871 GDNDLTGLIPTTLGQLKKLQELGIAGNRLRGSIPNDLCRLKNLGYLFLSSNQLTGSIPSC 930
Query: 227 FGNLTNLRSLHLGSNQITS-IPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDL 285
G L LR L+L SN + S IP +L L+ +L LNLSSNF TG LP E+GN+K + +DL
Sbjct: 931 LGYLPPLRELYLHSNALASNIPPSLWTLRGLLVLNLSSNFLTGHLPPEVGNIKSIRTLDL 990
Query: 286 SMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPIS 345
S N SG IP T+G L++L+ L L NRLQG IP GDL++LK LDLS NNLSG+IP S
Sbjct: 991 SKNQVSGHIPRTLGELQNLEDLSLSQNRLQGPIPLEFGDLLSLKFLDLSQNNLSGVIPKS 1050
Query: 346 LEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPCRTRIHHTS 405
L+ L LK +NVSFNKL+GEIP G F NF AESF NE LCG P+ QV C S
Sbjct: 1051 LKALTYLKYLNVSFNKLQGEIPDGGPFMNFTAESFIFNEALCGAPHFQVIACDKSTRSRS 1110
Query: 406 RKNGLLI--------------------GIRR--------------------LTYLELFQA 425
+ L I IRR +++ +L A
Sbjct: 1111 WRTKLFILKYILPPVISIITLVVFLVLWIRRRKNLEVPTPIDSWLPGSHEKISHQQLLYA 1170
Query: 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFD-------------------LQYREA 466
TN F E+NLI +G + VYK + G+ VAVKVF+ +++R
Sbjct: 1171 TNYFGEDNLIGKGSLSMVYKGVLSNGLTVAVKVFNLEFQGAFRSFDSECEVMQSIRHRNL 1230
Query: 467 FK------NFDIECDMMKHIR----------------------------------HRNLI 486
K N D + +++++ H +
Sbjct: 1231 VKIITCCSNLDFKALVLEYMPKGSLDKWLYSHNYFLDLIQRLNIMIDVASALEYLHHDCP 1290
Query: 487 KIISSCS--------NDDFKA---DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535
++ C +DD A DFG+A+ LL E +S+ QT+TL TIGYMAPEYG +G
Sbjct: 1291 SLVVHCDLKPNNILLDDDMVAHVGDFGIAR-LLTETESMQQTKTLGTIGYMAPEYGSDGI 1349
Query: 536 VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595
VST GDV+S+GIML+E F RKKP DE+F+G++TLK WV L S+++VVDA+LL +ED+
Sbjct: 1350 VSTKGDVFSYGIMLMEVFARKKPMDEMFNGDLTLKSWVESLAD-SMIEVVDANLLRREDE 1408
Query: 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
F K C+S + LA+ CT +SPEER++ K++
Sbjct: 1409 DFATKLSCLSSIMALALACTTDSPEERIDMKDV 1441
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485453|ref|XP_003633276.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 320/756 (42%), Positives = 427/756 (56%), Gaps = 134/756 (17%)
Query: 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQLQ------------NLEELLLWGNNFSGT 48
++ + N L G+VP IFN+S L L L L NLE+LL+ GN FSG
Sbjct: 436 LSLNVNNLTGIVPEAIFNISKLQVLSLAGNHLSGSLPSSIGSWLPNLEQLLIGGNEFSGI 495
Query: 49 IPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTS--STPKLNFLSSL 106
IP I N S L L++ N F G +P GNLR L LGL+ N LT+ S +L FL+SL
Sbjct: 496 IPMSISNMSNLISLDISDNFFIGNVPKDLGNLRQLQLLGLSHNQLTNEHSASELAFLTSL 555
Query: 107 SNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYL 166
+NC +L+ S S+N L G++P ++GNLS S+EI + C + G IP ISNLTNLI + L
Sbjct: 556 TNCIFLRTLSISDNPLKGMIPNSLGNLSISLEIIYASDCQLRGTIPTGISNLTNLIGLRL 615
Query: 167 GGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPAS 226
N L G IP G+LQKLQ+L++ N++ GSIP LC L L LDL SNKLSG +P+
Sbjct: 616 DDNDLTGLIPTPFGRLQKLQMLSISQNRIHGSIPSGLCHLTNLAFLDLSSNKLSGTIPSC 675
Query: 227 FGNLTNLRSLHLGSNQITS-IPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDL 285
GNLT LR+++L SN + S IPS+L NL+ +L LNLSSNF LPL++GN+K L+ +DL
Sbjct: 676 SGNLTGLRNVYLHSNGLASEIPSSLCNLRGLLVLNLSSNFLNSQLPLQVGNMKSLVALDL 735
Query: 286 SMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPIS 345
S N FSG IP TI L++L L+L +N+LQG IP + GDL++L+SLDLS NNLSG IP S
Sbjct: 736 SKNQFSGNIPSTISLLQNLLQLYLSHNKLQGHIPPNFGDLVSLESLDLSGNNLSGTIPKS 795
Query: 346 LEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPCRTRIHHTS 405
LE L L+ +NVSFNKL+GEIP G F NF AESF N LCG P QV C S
Sbjct: 796 LEHLKYLEYLNVSFNKLQGEIPNGGPFANFTAESFISNLALCGAPRFQVMACE----KDS 851
Query: 406 RKN--GLLIGI-----------------------------------------RRLTYLEL 422
RKN LL+ R + + EL
Sbjct: 852 RKNTKSLLLKCIVPLSVSLSTIILVVLFVQWKRRQTKSETPIQVDLSLPRMHRMIPHQEL 911
Query: 423 FQATNGFSENNLIDRGGIGYVYKRRIHYGMEV-----------AVKVFDLQ--------Y 463
ATN F E+NLI +G +G VYK + G+ V A K F+++ +
Sbjct: 912 LYATNYFGEDNLIGKGSLGMVYKGVLSDGLIVAVKVFNLELQGAFKSFEVECEVMRNIRH 971
Query: 464 REAFK------NFDIECDMMKHIRHRNLIKIISS-------------------------- 491
R K N D + +++++ + +L K + S
Sbjct: 972 RNLAKIISSCSNLDFKALVLEYMPNGSLEKWLYSHNYYLDFVQRLKIMIDVASGLEYLHH 1031
Query: 492 --------CS--------NDDFKA---DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGR 532
C +DD A DFG+AK LL + + +T+TL T+GYMAPEYG
Sbjct: 1032 YYSNPVVHCDLKPSNVLLDDDMVAHISDFGIAK-LLMGSEFMKRTKTLGTVGYMAPEYGS 1090
Query: 533 EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592
EG VST GD+YS+GI+L+ETF RKKPTDE+F E+TLK WV ++M+V+DA+LL++
Sbjct: 1091 EGIVSTKGDIYSYGILLMETFVRKKPTDEMFVEELTLKSWVESSTN-NIMEVIDANLLTE 1149
Query: 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
ED+ F +K C S + LA+ CTVE PE+R+N K++
Sbjct: 1150 EDESFALKRACFSSIMTLALDCTVEPPEKRINTKDV 1185
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147852480|emb|CAN78527.1| hypothetical protein VITISV_039533 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 314/757 (41%), Positives = 418/757 (55%), Gaps = 132/757 (17%)
Query: 1 MAFSF-----NKLVGVVPTTIFNVSTLNSLYLQ------------NVQLQNLEELLLWGN 43
MA F N L G VP IFN+S L SL + L +LE L + GN
Sbjct: 461 MALKFLNLGINNLTGTVPEAIFNISKLQSLAMAINHLSGSLPSSIGTWLPDLEGLFIGGN 520
Query: 44 NFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSS--TPKLN 101
FSG IP I N SKL++L++ NSF G +P GNL L L L N T+ +++
Sbjct: 521 EFSGIIPVSISNMSKLTQLDVSRNSFIGNVPKDLGNLTKLEVLNLAGNQFTNEHLASEVS 580
Query: 102 FLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNL 161
FL+SL+NCK+LK NN G LP ++GNL ++E F +C G IP I NLTNL
Sbjct: 581 FLTSLTNCKFLKNLWIGNNPFKGTLPNSLGNLPIALESFIASACQFRGTIPTGIGNLTNL 640
Query: 162 IAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSG 221
I + LG N L GSIP LG+L+KLQ L++ N+L GSIP+DLC L L L L SNKLSG
Sbjct: 641 IWLDLGANDLTGSIPTILGRLKKLQRLHIAGNRLRGSIPNDLCHLKNLGYLHLSSNKLSG 700
Query: 222 FVPASFGNLTNLRSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVL 280
+P+ FG+L L+ L L SN + +IP++L +L+D+L LNLSSNF TG LP E+GN+K +
Sbjct: 701 SIPSCFGDLPALQELFLDSNVLAFNIPTSLWSLRDLLVLNLSSNFLTGNLPPEVGNMKSI 760
Query: 281 IKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSG 340
+DLS N SG IP +G ++L L L NRLQG IP GDL++L+SLDLS NNLSG
Sbjct: 761 TTLDLSKNLVSGYIPRRMGEQQNLAKLSLSQNRLQGPIPVEFGDLVSLESLDLSQNNLSG 820
Query: 341 IIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPCRTR 400
IP SLE L+ LK +NVS NKL+GEIP G F NF AESF NE LCG P+ QV C
Sbjct: 821 TIPKSLEALIYLKYLNVSSNKLQGEIPNGGPFVNFTAESFMFNEALCGAPHFQVMACDKN 880
Query: 401 IHHTSRKNG--------------------LLIGIRR--------------------LTYL 420
S K +++ IRR +++
Sbjct: 881 NRTQSWKTKSFILKYILLPVGSTITLVVFIVLWIRRRDNMEIPTPIDSWLPGTHEKISHQ 940
Query: 421 ELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFK------------ 468
L ATN F E+NLI +G G VYK + G+ VA+KVF+L+++ A +
Sbjct: 941 RLLYATNDFGEDNLIGKGSQGMVYKGVLSNGLIVAIKVFNLEFQGALRSFDSECEVMQGI 1000
Query: 469 -------------NFDIECDMMKHIRHRNLIKIISS------------------------ 491
N D + ++K++ + +L K + S
Sbjct: 1001 RHRNLVRIITCCSNLDFKALVLKYMPNGSLEKWLYSHNYFLDLIQRLNIMIDVASALEYL 1060
Query: 492 ---CS---------------NDDFKA---DFGMAKPLLKEDQSLIQTQTLATIGYMAPEY 530
CS +DD A DFG+ K LL + +S+ QT+TL TIGYMAPE+
Sbjct: 1061 HHDCSSLVVHCDLKPSNVLLDDDMVAHVADFGITK-LLTKTESMQQTKTLGTIGYMAPEH 1119
Query: 531 GREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590
G +G VST DVYS+GI+L+E F RKKP DE+F+G++TLK WV L SV++VVD +LL
Sbjct: 1120 GSDGIVSTKSDVYSYGILLMEVFARKKPMDEMFTGDLTLKTWVES-LSNSVIQVVDVNLL 1178
Query: 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627
+ED+ K C+S + LA+ CT +SPEER++ K+
Sbjct: 1179 RREDEDLATKLSCLSSIMALALACTNDSPEERLDMKD 1215
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483198|ref|XP_002271405.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 320/750 (42%), Positives = 425/750 (56%), Gaps = 128/750 (17%)
Query: 6 NKLVGVVPTTIFNVSTL--NSLYLQNVQ----------LQNLEELLLWGNNFSGTIPSFI 53
N L G +P IFN+S++ SL N+ L NLE L+L N SG IPS I
Sbjct: 326 NSLTGHIPFQIFNISSMVSGSLTRNNLSGNLPPNFGSYLPNLENLILEINWLSGIIPSSI 385
Query: 54 FNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLT--SSTPKLNFLSSLSNCKY 111
NASKL L+ N G IP+ G+LR L RL L N L S +L+FL+SL+NCK
Sbjct: 386 GNASKLRSLDFGYNMLTGSIPHALGSLRFLERLNLGVNNLKGESYIQELSFLTSLTNCKR 445
Query: 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKL 171
L+ S N L GILP +IGNLS S++ F ++C + G IP EI NL+NL + L N L
Sbjct: 446 LRILYLSFNPLIGILPISIGNLSTSLQRFEANTCKLKGNIPTEIGNLSNLYLLSLNNNDL 505
Query: 172 NGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLT 231
G+IP ++G+LQKLQ L L N+L+GSIP+D+C+L L +L L +N+LSG +PA G LT
Sbjct: 506 TGTIPPSIGQLQKLQGLYLPSNKLQGSIPNDICQLRNLGELFLTNNQLSGSIPACLGELT 565
Query: 232 NLRSLHLGSNQITS-IPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNF 290
LR L+LGSN++ S IPSTL +L IL L++SSNF G LP ++GNLKVL+KIDLS N
Sbjct: 566 FLRHLYLGSNKLNSTIPSTLWSLIHILSLDMSSNFLVGYLPSDMGNLKVLVKIDLSRNQL 625
Query: 291 SGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLL 350
SG IP IG L+DL L L +NR +G I S +L +L+ +DLS+N L G IP SLE L+
Sbjct: 626 SGEIPSNIGGLQDLTSLSLAHNRFEGPILHSFSNLKSLEFMDLSDNALFGEIPKSLEGLV 685
Query: 351 DLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPCRTRIHHTSRKNGL 410
LK ++VSFN L GEIP EG F NF AESF N+ LCG P L++PPCRT ++ + L
Sbjct: 686 YLKYLDVSFNGLYGEIPPEGPFANFSAESFMMNKALCGSPRLKLPPCRTGTRWSTTISWL 745
Query: 411 LIGI----------------------------------------RRLTYLELFQATNGFS 430
L+ RR++Y E+FQATNGFS
Sbjct: 746 LLKYILPAILSTLLFLALIFVWTRCRKRNAVLPTQSESLLTATWRRISYQEIFQATNGFS 805
Query: 431 ENNLIDRGGIGYVYKRRIHYGM-----------EVAVKVFD--------LQYREAFK--- 468
NL+ RG +G VY+ + G E A K FD +++R K
Sbjct: 806 AGNLLGRGSLGSVYRGTLSDGKNAAIKVFNLQEEAAFKSFDAECEVMHHIRHRNLIKIVS 865
Query: 469 ---------------------------------------NFDIECDMMKHIRHRNLIKII 489
N I+ + H +
Sbjct: 866 SCSNSYIDFKALVLEYVPNGSLERWLYSHNYCLDILQRLNIMIDVALAMEYLHHGCSTPV 925
Query: 490 SSCS--------NDDFKA---DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVST 538
C ++DF DFG+AK LL+E++S+ +TQTLATIGYMAP+Y G V+T
Sbjct: 926 VHCDLKPSNILLDEDFGGHVGDFGIAK-LLREEESIRETQTLATIGYMAPKYVSNGIVTT 984
Query: 539 NGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598
+GDVYS+GI+L+ETFTR++PTDEIFS EM++K+WV D L S+ +VVDA+LL ED+ F+
Sbjct: 985 SGDVYSYGIVLMETFTRRRPTDEIFSEEMSMKNWVWDWLCGSITEVVDANLLRGEDEQFM 1044
Query: 599 IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
K QC+S + LAM C +SPEER+ K++
Sbjct: 1045 AKKQCISLILGLAMDCVADSPEERIKMKDV 1074
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483683|ref|XP_003633001.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 313/751 (41%), Positives = 413/751 (54%), Gaps = 133/751 (17%)
Query: 6 NKLVGVVPTTIFNVSTLNSLYL-QN-----------VQLQNLEELLLWGNNFSGTIPSFI 53
N L G +P IFN+S L +L L QN L +LE L + GN FSGTIP I
Sbjct: 470 NNLTGTIPEDIFNISKLQTLALAQNHLSGGLPSSIGTWLPDLEGLFIGGNEFSGTIPVSI 529
Query: 54 FNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSS--TPKLNFLSSLSNCKY 111
N SKL RL + N F G +P NLR L L L N LT T ++ FL+SL+NCK+
Sbjct: 530 SNMSKLIRLHISDNYFTGNVPKDLSNLRKLEVLNLAGNQLTDEHLTSEVGFLTSLTNCKF 589
Query: 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKL 171
L+ N L G LP ++GNLS ++E F +C+ G IP I NLTNLI + LG N L
Sbjct: 590 LRTLWIDYNPLKGTLPNSLGNLSVALESFTASACHFRGTIPTGIGNLTNLIWLDLGANDL 649
Query: 172 NGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLT 231
GSIP LG LQKLQ L + N+++GSIP+DLC L L L L SNKLSG +P+ FG+L
Sbjct: 650 TGSIPTTLGHLQKLQRLYIAGNRIQGSIPNDLCHLKNLGYLHLSSNKLSGSIPSCFGDLP 709
Query: 232 NLRSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNF 290
LR L L SN + +IP + +L+D++ L+LSSNF TG LP E+GN+K + +DLS N
Sbjct: 710 ALRELSLDSNVLAFNIPMSFWSLRDLMVLSLSSNFLTGNLPPEVGNMKSITTLDLSKNLI 769
Query: 291 SGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLL 350
SG IP +G L++L L L N+LQGSIP GDL++L+S+DLS NNL G IP SLE L+
Sbjct: 770 SGYIPRRMGELQNLVNLCLSQNKLQGSIPVEFGDLLSLESMDLSQNNLFGTIPKSLEALI 829
Query: 351 DLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPCRTRIHHTSRKNG- 409
LK +NVSFNKL+GEIP G F NF AESF NE LCG P+ QV C S K
Sbjct: 830 YLKHLNVSFNKLQGEIPNGGPFVNFTAESFIFNEALCGAPHFQVIACDKNNRTQSWKTKS 889
Query: 410 -------------------LLIGIRR--------------------LTYLELFQATNGFS 430
+++ IRR ++ +L ATNGF
Sbjct: 890 FILKYILLPVGSAVTLVAFIVLWIRRRDNTEIPAPIDSWLPGAHEKISQQQLLYATNGFG 949
Query: 431 ENNLIDRGGIGYVYKRRIHYGMEV-----------AVKVFD------------------- 460
E+NLI +G +G VYK + G+ V A++ FD
Sbjct: 950 EDNLIGKGSLGMVYKGVLSNGLTVAIKVFNLEFQGALRSFDSECEVMQGICHRNLIRIIT 1009
Query: 461 -----------LQYR----------------EAFKNFDIECDMMKHIR--HRNLIKIISS 491
L+Y + F+ +I D+ + H + ++
Sbjct: 1010 CCSNLDFKALVLEYMPKGSLDKWLYSHNYFLDLFQRLNIMIDVASALEYLHHDCSSLVVH 1069
Query: 492 CSNDDFK--------------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVS 537
C D K ADFG+A+ LL E +S+ QT+TL TIGYMAPEYG +G VS
Sbjct: 1070 C---DLKPSNVLLDNNMVAHVADFGIAR-LLTETESMQQTKTLGTIGYMAPEYGSDGIVS 1125
Query: 538 TNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHF 597
T GDVYS+GI+L+E F RKKP DE+F+G++TLK WV L SV++VVDA+LL ++D+
Sbjct: 1126 TKGDVYSYGILLMEVFARKKPMDEMFTGDVTLKTWVES-LSSSVIEVVDANLLRRDDEDL 1184
Query: 598 VIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
K +S + LA+ CT +SPEER+N K++
Sbjct: 1185 ATKLSYLSSLMALALACTADSPEERINMKDV 1215
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147769371|emb|CAN72496.1| hypothetical protein VITISV_010511 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 311/752 (41%), Positives = 417/752 (55%), Gaps = 127/752 (16%)
Query: 1 MAFSFNKLVGVVPTTIFNVSTLNSLYL-QN-----------VQLQNLEELLLWGNNFSGT 48
+ N L G VP IFN+S L L L QN L +LE L + N FSGT
Sbjct: 478 LDLGMNFLTGTVPEAIFNISELQILVLVQNHLSGSLPPSIGTWLPDLEGLYIGSNKFSGT 537
Query: 49 IPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSS--TPKLNFLSSL 106
IP I N SKL +L++ NSF G +P GNL L L L N LT+ + FL+SL
Sbjct: 538 IPMSISNMSKLIQLQVWDNSFTGNVPKDLGNLTKLEVLNLAANQLTNEHLASGVGFLTSL 597
Query: 107 SNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYL 166
+NCK+L++ +N G LP ++GNL ++E F +C G IP I NLTNLI + L
Sbjct: 598 TNCKFLRHLWIDDNPFKGTLPNSLGNLPIALESFTASACQFRGTIPTGIGNLTNLIELDL 657
Query: 167 GGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPAS 226
G N L SIP LG+LQKLQ L++ N++ GSIP+DLC L L L L SNKLSG +P+
Sbjct: 658 GANDLTRSIPTTLGRLQKLQRLHIAGNRIRGSIPNDLCHLKNLGYLHLXSNKLSGSIPSC 717
Query: 227 FGNLTNLRSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDL 285
FG+L L+ L L SN + +IP++L +L+D+L LNLSSNF TG LP E+GN+K + +DL
Sbjct: 718 FGDLPALQELFLDSNVLAFNIPTSLWSLRDLLVLNLSSNFLTGNLPPEVGNMKSITTLDL 777
Query: 286 SMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPIS 345
S N SG IP +G ++L L L NRLQG IP GDL++L+SLDLS NNLSG IP S
Sbjct: 778 SKNLVSGYIPRRMGEQQNLAKLSLSQNRLQGPIPXEFGDLVSLESLDLSQNNLSGTIPKS 837
Query: 346 LEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPCRTRIHHTS 405
LE L+ LK +NVS NKL+GEIP G F NF AESF NE LCG P+ QV C S
Sbjct: 838 LEALIYLKYLNVSSNKLQGEIPNGGPFXNFTAESFMFNEALCGAPHFQVMACDKNNRTQS 897
Query: 406 RKNG--------------------LLIGIRR--------------------LTYLELFQA 425
K +++ IRR +++ +L A
Sbjct: 898 WKTKSFILKYILLPVGSTITLVVFIVLWIRRRDNMEIXTPIDSWLPGTHEKISHQQLLYA 957
Query: 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFK----------------- 468
TN F E+NLI +G G VYK + G+ VA+KVF+L+++ A +
Sbjct: 958 TNDFGEDNLIGKGSQGMVYKGVLSNGLIVAIKVFNLEFQGALRSFDSECEVMQGIRHRNL 1017
Query: 469 --------NFDIECDMMKHIRHRNLIKIISS---------------------------CS 493
N D + ++K++ + +L K + S CS
Sbjct: 1018 VRIITCCSNLDFKALVLKYMPNGSLEKWLYSHNYFLDLIQRLNIMIDVASALEYLHHDCS 1077
Query: 494 ---------------NDDFKA---DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535
+DB A DFG+AK LL + +S+ QT+TL TIGYMAPE+G +G
Sbjct: 1078 SLVVHCDLKPSNVLLDDBMVAHVTDFGIAK-LLTKTESMQQTKTLGTIGYMAPEHGSDGI 1136
Query: 536 VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595
VST DVYS+GI+L+E F RKKP DE+F+G++TLK WV L SV++VVD +LL +ED+
Sbjct: 1137 VSTKSDVYSYGILLMEVFARKKPMDEMFTGDLTLKTWVES-LSNSVIQVVDVNLLRREDE 1195
Query: 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627
K C+S + LA+ CT +SPEER++ K+
Sbjct: 1196 DLATKLSCLSSIMALALACTNDSPEERLDMKD 1227
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298204751|emb|CBI25249.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 280/551 (50%), Positives = 363/551 (65%), Gaps = 40/551 (7%)
Query: 83 LNRLGLNDNYLT--SSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIF 140
L RL L N L SS +L+FL+SL+NCK L+ S N L GILP +IGNLS S+++F
Sbjct: 1448 LERLHLGANNLKGESSIQELSFLTSLTNCKRLRILYLSFNPLIGILPISIGNLSTSLQLF 1507
Query: 141 WMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIP 200
+C + G IP EI NL+NL + L N L G+IP ++G+LQKLQ L L N+L+GSIP
Sbjct: 1508 GASTCKLKGNIPTEIGNLSNLYQLSLNNNDLTGTIPPSIGQLQKLQGLYLPANKLQGSIP 1567
Query: 201 DDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITS-IPSTLLNLKDILYL 259
+D+C+L L +L L +N+LSG +PA G L LR L+LGSN++ S IP TL +L DIL L
Sbjct: 1568 NDICQLRNLVELYLANNQLSGSIPACLGELAFLRHLYLGSNKLNSTIPLTLWSLNDILSL 1627
Query: 260 NLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIP 319
++SSNF G LP ++GNLKVL+KIDLS N SG IP IG L DL L L +NRL+G I
Sbjct: 1628 DMSSNFLVGYLPSDMGNLKVLVKIDLSRNQLSGEIPSNIGGLLDLTSLSLAHNRLEGPIL 1687
Query: 320 DSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAES 379
S +L +L+ +DLS+N LSG IP SLE L+ LK +N+SFN+L GEIP EG F NF AES
Sbjct: 1688 HSFSNLKSLEFMDLSDNALSGEIPKSLEGLVYLKYLNMSFNRLYGEIPTEGPFANFSAES 1747
Query: 380 FKGNELLCGMPNLQVPPCRTRIHHTSRKNGLLIGIRRLTYLELFQATNGFSENNLIDRGG 439
F N+ LCG P L++PPCRT ++ + LL L Y+ A+ +
Sbjct: 1748 FMMNKALCGSPRLKLPPCRTVTRWSTTISWLL-----LKYILPTIAST-------LLLLA 1795
Query: 440 IGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSND--DF 497
+ +V+ R VF++Q AFK+FD EC++M+HIRHRNLIKIISSCSN DF
Sbjct: 1796 LIFVWTR-----CRKRNAVFNMQEEAAFKSFDAECEVMRHIRHRNLIKIISSCSNSYIDF 1850
Query: 498 KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKK 557
KA TLATIGYMAPEYG G V+T GDVYS+GI+L+ETFTR++
Sbjct: 1851 KA------------------LTLATIGYMAPEYGSNGIVTTRGDVYSYGIVLMETFTRRR 1892
Query: 558 PTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVE 617
PTDEIFS EM++K+WV D L SV +VVDA+LL ED+ F+ K QC+S V LA+ C +
Sbjct: 1893 PTDEIFSEEMSMKNWVRDSLCGSVTEVVDANLLRGEDEQFMAKKQCISSVLGLAVDCVAD 1952
Query: 618 SPEERVNAKEI 628
S EER+N K++
Sbjct: 1953 SHEERINMKDV 1963
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 628 | ||||||
| TAIR|locus:2079142 | 1010 | AT3G47570 [Arabidopsis thalian | 0.609 | 0.379 | 0.326 | 2.3e-83 | |
| TAIR|locus:2075661 | 1025 | AT3G47110 [Arabidopsis thalian | 0.579 | 0.355 | 0.334 | 1.1e-80 | |
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.565 | 0.346 | 0.337 | 3.8e-80 | |
| TAIR|locus:2149922 | 1031 | EFR "EF-TU receptor" [Arabidop | 0.579 | 0.353 | 0.307 | 6.6e-77 | |
| TAIR|locus:2075631 | 1009 | AT3G47090 [Arabidopsis thalian | 0.565 | 0.351 | 0.300 | 2.2e-76 | |
| TAIR|locus:2079157 | 1011 | AT3G47580 [Arabidopsis thalian | 0.563 | 0.350 | 0.287 | 7.4e-74 | |
| TAIR|locus:2182855 | 967 | ERL2 "ERECTA-like 2" [Arabidop | 0.541 | 0.351 | 0.304 | 2.3e-60 | |
| TAIR|locus:2167948 | 966 | ERL1 "ERECTA-like 1" [Arabidop | 0.654 | 0.425 | 0.280 | 5.6e-60 | |
| TAIR|locus:2005498 | 1196 | BRI1 "BRASSINOSTEROID INSENSIT | 0.434 | 0.228 | 0.313 | 3.4e-46 | |
| TAIR|locus:2047525 | 980 | AT2G24130 [Arabidopsis thalian | 0.520 | 0.333 | 0.305 | 1.7e-57 |
| TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 2.3e-83, Sum P(3) = 2.3e-83
Identities = 129/395 (32%), Positives = 180/395 (45%)
Query: 42 GNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFXXXXXXXXXXXXDNYLTSSTPK-L 100
GN F+G+IP+ + N S L RL + N+ G IP TF N L S + + L
Sbjct: 268 GNYFTGSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLGSDSSRDL 326
Query: 101 NFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTN 160
FL+SL+NC L+ N L G LP +I NLS + + ISG IP +I NL N
Sbjct: 327 EFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLIN 386
Query: 161 LIAIYLGGNKLNGSIPIAXXXXXXXXXXXXXXXXXXXSIPDDLCRLAALFQLDLGSNKLS 220
L + L N L+G +P + IP + + L LDL +N
Sbjct: 387 LQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFE 446
Query: 221 GFVPASFGNLTNLRSLHLGSNQIT-SIPSTXXXXXXXXXXXXSSNFFTGPLPLEIGNLKV 279
G VP S GN ++L L +G N++ +IP S N G LP +IG L+
Sbjct: 447 GIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQN 506
Query: 280 LIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDXXXXXXXXXXXXXXX 339
L + L N SG +P T+G ++ LFLE N G IPD G
Sbjct: 507 LGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPDLKG-LVGVKEVDLSNNDLS 565
Query: 340 XXXPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCG-MPNLQVPPCR 398
P L+ +N+SFN LEG++P +G F N S GN LCG + Q+ PC
Sbjct: 566 GSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMGFQLKPCL 625
Query: 399 TRI-----HHTSRKNGLLIGIR-RLTYLEL-FQAT 426
++ H+SR ++IG+ +T L L F A+
Sbjct: 626 SQAPSVVKKHSSRLKKVVIGVSVGITLLLLLFMAS 660
|
|
| TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 469 (170.2 bits), Expect = 1.1e-80, Sum P(3) = 1.1e-80
Identities = 124/371 (33%), Positives = 176/371 (47%)
Query: 43 NNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFXXXXXXXXXXXXDNYLTS-STPKLN 101
N+F+GTIP + N S L +L++ N G IP +F +N L + S+ L+
Sbjct: 284 NSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDLD 343
Query: 102 FLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNL 161
FL +L+NC L+Y + N L G LP I NLS + + ISG IP I NL +L
Sbjct: 344 FLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSL 403
Query: 162 IAIYLGGNKLNGSIPIAXXXXXXXXXXXXXXXXXXXSIPDDLCRLAALFQLDLGSNKLSG 221
+ LG N L G +P + IP L ++ L L L +N G
Sbjct: 404 QTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEG 463
Query: 222 FVPASFGNLTNLRSLHLGSNQIT-SIPSTXXXXXXXXXXXXSSNFFTGPLPLEIGNLKVL 280
+P+S G+ + L L+LG+N++ SIP S N GPL +IG LK L
Sbjct: 464 SIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVVLNVSFNLLVGPLRQDIGKLKFL 523
Query: 281 IKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDXXXXXXXXXXXXXXXX 340
+ +D+S N SG IP T+ L++L L+ N G IPD G
Sbjct: 524 LALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPDIRG-LTGLRFLDLSKNNLSG 582
Query: 341 XXPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCG-MPNLQVPPCRT 399
P + L+++N+S N +G +P EG FRN A S GN LCG +P+LQ+ PC
Sbjct: 583 TIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIPSLQLQPCSV 642
Query: 400 RI--HHTS-RK 407
+ H+S RK
Sbjct: 643 ELPRRHSSVRK 653
|
|
| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 489 (177.2 bits), Expect = 3.8e-80, Sum P(3) = 3.8e-80
Identities = 121/359 (33%), Positives = 172/359 (47%)
Query: 43 NNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFXXXXXXXXXXXXDN-YLTSSTPKLN 101
N F G IP+ + NAS L+ +++ N F G I + F N + T
Sbjct: 283 NRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRNLFQTREQDDWG 342
Query: 102 FLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNL 161
F+S L+NC L+ + N+L G+LP + NLS S+ + I+G IP++I NL L
Sbjct: 343 FISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGSIPKDIGNLIGL 402
Query: 162 IAIYLGGNKLNGSIPIAXXXXXXXXXXXXXXXXXXXSIPDDLCRLAALFQLDLGSNKLSG 221
+YL N GS+P + SIP + L L L LG+NK SG
Sbjct: 403 QHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELNILLLGTNKFSG 462
Query: 222 FVPASFGNLTNLRSLHLGSNQITS-IPSTXXXXXXXXXXXX-SSNFFTGPLPLEIGNLKV 279
++P + NLTNL SL L +N ++ IPS S N G +P EIG+LK
Sbjct: 463 WIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEGSIPQEIGHLKN 522
Query: 280 LIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDXXXXXXXXXXXXXXX 339
L++ N SG IP T+G + L+YL+L+ N L GSIP ++G
Sbjct: 523 LVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLETLDLSSNNLS 582
Query: 340 XXXPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCG-MPNLQVPPC 397
P SL + L +N+SFN GE+P G+F S +GN LCG +P+L +P C
Sbjct: 583 GQIPTSLADITMLHSLNLSFNSFVGEVPTIGAFAAASGISIQGNAKLCGGIPDLHLPRC 641
|
|
| TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 454 (164.9 bits), Expect = 6.6e-77, Sum P(4) = 6.6e-77
Identities = 113/368 (30%), Positives = 169/368 (45%)
Query: 43 NNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFXXXXXXXXXXXXDNYL-TSSTPKLN 101
N F+G IP + N S L R ++ N G IP +F +N L +S+ L
Sbjct: 276 NQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLE 335
Query: 102 FLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNL 161
F+ +++NC L+Y N L G LP +I NLS ++ ++ ISG IP +I NL +L
Sbjct: 336 FIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSL 395
Query: 162 IAIYLGGNKLNGSIPIAXXXXXXXXXXXXXXXXXXXSIPDDLCRLAALFQLDLGSNKLSG 221
+ L N L+G +P++ IP + L +L L SN G
Sbjct: 396 QELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHG 455
Query: 222 FVPASFGNLTNLRSLHLGSNQIT-SIPSTXXXXXXXXXXXXSSNFFTGPLPLEIGNLKVL 280
+P S G L L + +N++ +IP S+NF TG P E+G L++L
Sbjct: 456 RIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFPEEVGKLELL 515
Query: 281 IKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDXXXXXXXXXXXXXXXX 340
+ + S N SG +P IG +++LF++ N G+IPD I
Sbjct: 516 VGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNLSG 574
Query: 341 XXPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCG-MPNLQVPPCRT 399
P L L L+++N+S NK EG +P G FRN A S GN +CG + +Q+ PC
Sbjct: 575 RIPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGVREMQLKPCIV 634
Query: 400 RIHHTSRK 407
+ RK
Sbjct: 635 QASPRKRK 642
|
|
| TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 2.2e-76, Sum P(3) = 2.2e-76
Identities = 108/359 (30%), Positives = 160/359 (44%)
Query: 42 GNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFXXXXXXXXXXXXDNYLTS-STPKL 100
GN +G IP+ + N S L + N G I F +N L S S L
Sbjct: 268 GNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYLELANNSLGSYSFGDL 327
Query: 101 NFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTN 160
FL +L+NC +L S S N L G LP +I N+S + + + I G IP +I NL
Sbjct: 328 AFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKGNLIYGSIPHDIGNLIG 387
Query: 161 LIAIYLGGNKLNGSIPIAXXXXXXXXXXXXXXXXXXXSIPDDLCRLAALFQLDLGSNKLS 220
L ++ L N L G +P + IP + L L +L L +N
Sbjct: 388 LQSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQLVKLYLSNNSFE 447
Query: 221 GFVPASFGNLTNLRSLHLGSNQIT-SIPSTXXXXXXXXXXXXSSNFFTGPLPLEIGNLKV 279
G VP S G+ +++ L +G N++ +IP SN +G LP +IG L+
Sbjct: 448 GIVPPSLGDCSHMLDLQIGYNKLNGTIPKEIMQIPTLVHLNMESNSLSGSLPNDIGRLQN 507
Query: 280 LIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDXXXXXXXXXXXXXXX 339
L+++ L NN SG +P T+G ++ ++L+ N G+IPD G
Sbjct: 508 LVELLLGNNNLSGHLPQTLGKCLSMEVIYLQENHFDGTIPDIKGLMGVKNVDLSNNNLSG 567
Query: 340 XXXPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCG-MPNLQVPPC 397
E L+ +N+S N EG +P EG F+N S GN+ LCG + L++ PC
Sbjct: 568 SISEY-FENFSKLEYLNLSDNNFEGRVPTEGIFQNATLVSVFGNKNLCGSIKELKLKPC 625
|
|
| TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 388 (141.6 bits), Expect = 7.4e-74, Sum P(4) = 7.4e-74
Identities = 103/358 (28%), Positives = 158/358 (44%)
Query: 43 NNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFXXXXXXXXXXXXDNYLTSST-PKLN 101
N+ G IP+ + N S L + + N G I F +N L S T L
Sbjct: 269 NDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLDLSENPLGSYTFGDLE 328
Query: 102 FLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNL 161
F+ SL+NC +L+ S L G LP +I N+S + + + G IP++I NL L
Sbjct: 329 FIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIGNHFFGSIPQDIGNLIGL 388
Query: 162 IAIYLGGNKLNGSIPIAXXXXXXXXXXXXXXXXXXXSIPDDLCRLAALFQLDLGSNKLSG 221
+ LG N L G +P + IP + L L L L +N G
Sbjct: 389 QRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEILYLSNNSFEG 448
Query: 222 FVPASFGNLTNLRSLHLGSNQIT-SIPSTXXXXXXXXXXXXSSNFFTGPLPLEIGNLKVL 280
VP S G +++ L +G N++ +IP N +G LP +IG+L+ L
Sbjct: 449 IVPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTLVNLSMEGNSLSGSLPNDIGSLQNL 508
Query: 281 IKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDXXXXXXXXXXXXXXXX 340
+K+ L N FSG +P T+G ++ LFL+ N G+IP+ G
Sbjct: 509 VKLSLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIPNIRG-LMGVRRVDLSNNDLSG 567
Query: 341 XXPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCG-MPNLQVPPC 397
P L+ +N+S N G++P +G+F+N GN+ LCG + +L++ PC
Sbjct: 568 SIPEYFANFSKLEYLNLSINNFTGKVPSKGNFQNSTIVFVFGNKNLCGGIKDLKLKPC 625
|
|
| TAIR|locus:2182855 ERL2 "ERECTA-like 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 407 (148.3 bits), Expect = 2.3e-60, Sum P(3) = 2.3e-60
Identities = 106/348 (30%), Positives = 157/348 (45%)
Query: 42 GNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFXXXXXXXXXXXXDNYLTSSTPKLN 101
GNN +GTIP I N + L++ N G IP N LT P++
Sbjct: 226 GNNLTGTIPESIGNCTSFEILDVSYNQITGVIPYNIGFLQVATLSLQG-NKLTGRIPEV- 283
Query: 102 FLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNL 161
+ + L S+N L G +P +GNLS + +++ +H ++G IP E+ N++ L
Sbjct: 284 ----IGLMQALAVLDLSDNELTGPIPPILGNLSFTGKLY-LHGNKLTGQIPPELGNMSRL 338
Query: 162 IAIYLGGNKLNGSIPIAXXXXXXXXXXXXXXXXXXXSIPDDLCRLAALFQLDLGSNKLSG 221
+ L N+L G IP IP ++ AAL Q ++ N LSG
Sbjct: 339 SYLQLNDNELVGKIPPELGKLEQLFELNLANNNLVGLIPSNISSCAALNQFNVHGNFLSG 398
Query: 222 FVPASFGNLTNLRSLHLGSNQITS-IPSTXXXXXXXXXXXXSSNFFTGPLPLEIGNLKVL 280
VP F NL +L L+L SN IP+ S N F+G +PL +G+L+ L
Sbjct: 399 AVPLEFRNLGSLTYLNLSSNSFKGKIPAELGHIINLDTLDLSGNNFSGSIPLTLGDLEHL 458
Query: 281 IKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDXXXXXXXXXXXXXXXX 340
+ ++LS N+ +G +P G L+ +Q + + +N L G IP +G
Sbjct: 459 LILNLSRNHLNGTLPAEFGNLRSIQIIDVSFNFLAGVIPTELGQLQNINSLILNNNKIHG 518
Query: 341 XXPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCG 388
P L L ++N+SFN L G IP +F F SF GN LCG
Sbjct: 519 KIPDQLTNCFSLANLNISFNNLSGIIPPMKNFTRFSPASFFGNPFLCG 566
|
|
| TAIR|locus:2167948 ERL1 "ERECTA-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 5.6e-60, Sum P(3) = 5.6e-60
Identities = 119/424 (28%), Positives = 189/424 (44%)
Query: 42 GNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFXXXXXXXXXXXXDNYLTSSTPKLN 101
GNN +GTIP I N + L++ N G IP N LT P++
Sbjct: 224 GNNLTGTIPESIGNCTSFQILDISYNQITGEIPYNIGFLQVATLSLQG-NRLTGRIPEV- 281
Query: 102 FLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNL 161
+ + L S+N L G +P +GNLS + +++ +H ++G IP E+ N++ L
Sbjct: 282 ----IGLMQALAVLDLSDNELVGPIPPILGNLSFTGKLY-LHGNMLTGPIPSELGNMSRL 336
Query: 162 IAIYLGGNKLNGSIPIAXXXXXXXXXXXXXXXXXXXSIPDDLCRLAALFQLDLGSNKLSG 221
+ L NKL G+IP IP ++ AAL Q ++ N LSG
Sbjct: 337 SYLQLNDNKLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISSCAALNQFNVHGNLLSG 396
Query: 222 FVPASFGNLTNLRSLHLGSNQITS-IPSTXXXXXXXXXXXXSSNFFTGPLPLEIGNLKVL 280
+P +F NL +L L+L SN IP S N F+G +PL +G+L+ L
Sbjct: 397 SIPLAFRNLGSLTYLNLSSNNFKGKIPVELGHIINLDKLDLSGNNFSGSIPLTLGDLEHL 456
Query: 281 IKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDXXXXXXXXXXXXXXXX 340
+ ++LS N+ SG +P G L+ +Q + + +N L G IP +G
Sbjct: 457 LILNLSRNHLSGQLPAEFGNLRSIQMIDVSFNLLSGVIPTELGQLQNLNSLILNNNKLHG 516
Query: 341 XXPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCG--MPNLQVPPCR 398
P L L ++NVSFN L G +P +F F SF GN LCG + ++ P +
Sbjct: 517 KIPDQLTNCFTLVNLNVSFNNLSGIVPPMKNFSRFAPASFVGNPYLCGNWVGSICGPLPK 576
Query: 399 TRIHHTSRKNGLLIGIRRLTYLELFQATNGFSENNLIDRGGIGYV--YKRRIHYGMEVAV 456
+R+ +++G+ L + +F A + I +G + + M++A+
Sbjct: 577 SRVFSRGALICIVLGVITLLCM-IFLAVYKSMQQKKILQGSSKQAEGLTKLVILHMDMAI 635
Query: 457 KVFD 460
FD
Sbjct: 636 HTFD 639
|
|
| TAIR|locus:2005498 BRI1 "BRASSINOSTEROID INSENSITIVE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 285 (105.4 bits), Expect = 3.4e-46, Sum P(3) = 3.4e-46
Identities = 88/281 (31%), Positives = 118/281 (41%)
Query: 43 NNFSGTIPSFIFNA-SKLSRLELQMNSFYGFIPNTFXXXXXXXXXXXXDNYLTSSTPKLN 101
N F+G IP F+ A L+ L+L N FYG +P F N + P
Sbjct: 301 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP--- 357
Query: 102 FLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGI-PEEISNLTN 160
+ +L + LK S N G LP ++ NLS S+ + S N SG I P N N
Sbjct: 358 -MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 416
Query: 161 LIA-IYLGGNKLNGSIPIAXXXXXXXXXXXXXXXXXXXSIPDDLCRLAALFQLDLGSNKL 219
+ +YL N G IP +IP L L+ L L L N L
Sbjct: 417 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 476
Query: 220 SGFVPASFGNLTNLRSLHLGSNQITS-IPSTXXXXXXXXXXXXSSNFFTGPLPLEIGNLK 278
G +P + L +L L N +T IPS S+N TG +P IG L+
Sbjct: 477 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 536
Query: 279 VLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIP 319
L + LS N+FSG IP +G + L +L L N G+IP
Sbjct: 537 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 577
|
|
| TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 1.7e-57, Sum P(3) = 1.7e-57
Identities = 102/334 (30%), Positives = 155/334 (46%)
Query: 41 WGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFXXXXXXXXXXXXD-NYLTSSTPK 99
W N +GT+PS + N++ L ++L+ N G +P+ N+ S
Sbjct: 199 WSNKLTGTVPSSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYLSYNHFVSHNNN 258
Query: 100 LN---FLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEIS 156
N F +SL+N L+ + NSL G + ++ +LS ++ + I G IP EIS
Sbjct: 259 TNLEPFFASLANSSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLDQNRIHGSIPPEIS 318
Query: 157 NLTNLIAIYLGGNKLNGSIPIAXXXXXXXXXXXXXXXXXXXSIPDDLCRLAALFQLDLGS 216
NL NL + L N L+G IP IP +L + L LD+
Sbjct: 319 NLLNLTLLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIPRLGLLDVSR 378
Query: 217 NKLSGFVPASFGNLTNLRSLHLGSNQIT-SIPSTXXXXXXXXXXXXSSNFFTGPLPLEI- 274
N LSG +P SFGNL+ LR L L N ++ ++P + S N TG +P+E+
Sbjct: 379 NNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVV 438
Query: 275 GNLKVL-IKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDXXXXXXXXX 333
NL+ L + ++LS N+ SG IP+ + + + + L N L G IP +G
Sbjct: 439 SNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNL 498
Query: 334 XXXXXXXXXPISLEKLLDLKDINVSFNKLEGEIP 367
P SL +L LK+++VSFN+L G IP
Sbjct: 499 SRNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIP 532
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 628 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 8e-55 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 9e-55 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-50 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-50 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-44 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-42 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-16 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-16 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 8e-16 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-11 | |
| smart00219 | 257 | smart00219, TyrKc, Tyrosine kinase, catalytic doma | 2e-10 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 7e-10 | |
| pfam07714 | 258 | pfam07714, Pkinase_Tyr, Protein tyrosine kinase | 1e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-09 | |
| cd00192 | 262 | cd00192, PTKc, Catalytic domain of Protein Tyrosin | 3e-09 | |
| smart00221 | 258 | smart00221, STYKc, Protein kinase; unclassified sp | 4e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-08 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-07 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-07 | |
| cd05051 | 296 | cd05051, PTKc_DDR, Catalytic domain of the Protein | 1e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-07 | |
| smart00220 | 254 | smart00220, S_TKc, Serine/Threonine protein kinase | 3e-07 | |
| pfam00069 | 260 | pfam00069, Pkinase, Protein kinase domain | 4e-07 | |
| cd05148 | 261 | cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro | 6e-07 | |
| cd05049 | 280 | cd05049, PTKc_Trk, Catalytic domain of the Protein | 6e-07 | |
| cd00180 | 215 | cd00180, PKc, Catalytic domain of Protein Kinases | 1e-06 | |
| cd05094 | 291 | cd05094, PTKc_TrkC, Catalytic domain of the Protei | 1e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 1e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 2e-06 | |
| cd06606 | 260 | cd06606, STKc_MAPKKK, Catalytic domain of the Prot | 3e-06 | |
| cd00180 | 215 | cd00180, PKc, Catalytic domain of Protein Kinases | 9e-06 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-05 | |
| cd05032 | 277 | cd05032, PTKc_InsR_like, Catalytic domain of Insul | 1e-05 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-05 | |
| cd05122 | 253 | cd05122, PKc_STE, Catalytic domain of STE family P | 2e-05 | |
| cd05044 | 269 | cd05044, PTKc_c-ros, Catalytic domain of the Prote | 2e-05 | |
| cd05068 | 261 | cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re | 2e-05 | |
| cd05090 | 283 | cd05090, PTKc_Ror1, Catalytic domain of the Protei | 2e-05 | |
| cd05062 | 277 | cd05062, PTKc_IGF-1R, Catalytic domain of the Prot | 2e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 3e-05 | |
| cd06623 | 264 | cd06623, PKc_MAPKK_plant_like, Catalytic domain of | 3e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 4e-05 | |
| cd05040 | 257 | cd05040, PTKc_Ack_like, Catalytic domain of the Pr | 4e-05 | |
| cd05038 | 284 | cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai | 4e-05 | |
| cd05034 | 261 | cd05034, PTKc_Src_like, Catalytic domain of Src ki | 4e-05 | |
| cd05084 | 252 | cd05084, PTKc_Fes, Catalytic domain of the Protein | 4e-05 | |
| cd05036 | 277 | cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro | 5e-05 | |
| cd05082 | 256 | cd05082, PTKc_Csk, Catalytic domain of the Protein | 5e-05 | |
| cd05071 | 262 | cd05071, PTKc_Src, Catalytic domain of the Protein | 5e-05 | |
| smart00220 | 254 | smart00220, S_TKc, Serine/Threonine protein kinase | 7e-05 | |
| cd05039 | 256 | cd05039, PTKc_Csk_like, Catalytic domain of C-term | 8e-05 | |
| COG0515 | 384 | COG0515, SPS1, Serine/threonine protein kinase [Ge | 9e-05 | |
| cd05057 | 279 | cd05057, PTKc_EGFR_like, Catalytic domain of Epide | 9e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 1e-04 | |
| cd05085 | 250 | cd05085, PTKc_Fer, Catalytic domain of the Protein | 1e-04 | |
| cd05123 | 250 | cd05123, STKc_AGC, Catalytic domain of AGC family | 1e-04 | |
| cd05092 | 280 | cd05092, PTKc_TrkA, Catalytic domain of the Protei | 1e-04 | |
| cd05112 | 256 | cd05112, PTKc_Itk, Catalytic domain of the Protein | 1e-04 | |
| pfam00069 | 260 | pfam00069, Pkinase, Protein kinase domain | 2e-04 | |
| cd05095 | 296 | cd05095, PTKc_DDR2, Catalytic domain of the Protei | 2e-04 | |
| cd05041 | 251 | cd05041, PTKc_Fes_like, Catalytic domain of Fes-li | 2e-04 | |
| cd05061 | 288 | cd05061, PTKc_InsR, Catalytic domain of the Protei | 3e-04 | |
| cd05059 | 256 | cd05059, PTKc_Tec_like, Catalytic domain of Tec-li | 3e-04 | |
| cd05048 | 283 | cd05048, PTKc_Ror, Catalytic Domain of the Protein | 3e-04 | |
| cd05107 | 401 | cd05107, PTKc_PDGFR_beta, Catalytic domain of the | 4e-04 | |
| cd05097 | 295 | cd05097, PTKc_DDR_like, Catalytic domain of Discoi | 4e-04 | |
| cd06630 | 268 | cd06630, STKc_MEKK1, Catalytic domain of the Prote | 4e-04 | |
| PTZ00283 | 496 | PTZ00283, PTZ00283, serine/threonine protein kinas | 4e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 7e-04 | |
| cd05069 | 260 | cd05069, PTKc_Yes, Catalytic domain of the Protein | 7e-04 | |
| cd05070 | 260 | cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro | 7e-04 | |
| cd05093 | 288 | cd05093, PTKc_TrkB, Catalytic domain of the Protei | 8e-04 | |
| cd05067 | 260 | cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro | 9e-04 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 0.001 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.001 | |
| cd05058 | 262 | cd05058, PTKc_Met_Ron, Catalytic domain of the Pro | 0.001 | |
| cd05114 | 256 | cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro | 0.001 | |
| cd05105 | 400 | cd05105, PTKc_PDGFR_alpha, Catalytic domain of the | 0.001 | |
| cd05055 | 302 | cd05055, PTKc_PDGFR, Catalytic domain of the Prote | 0.002 | |
| cd05096 | 304 | cd05096, PTKc_DDR1, Catalytic domain of the Protei | 0.002 | |
| pfam12799 | 43 | pfam12799, LRR_4, Leucine Rich repeats (2 copies) | 0.003 | |
| pfam12799 | 43 | pfam12799, LRR_4, Leucine Rich repeats (2 copies) | 0.003 | |
| cd05046 | 275 | cd05046, PTK_CCK4, Pseudokinase domain of the Prot | 0.003 | |
| cd05083 | 254 | cd05083, PTKc_Chk, Catalytic domain of the Protein | 0.004 | |
| cd05060 | 257 | cd05060, PTKc_Syk_like, Catalytic domain of Spleen | 0.004 | |
| cd05045 | 290 | cd05045, PTKc_RET, Catalytic domain of the Protein | 0.004 | |
| cd06613 | 262 | cd06613, STKc_MAP4K3_like, Catalytic domain of Mit | 0.004 | |
| cd05081 | 284 | cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) | 0.004 | |
| cd05102 | 338 | cd05102, PTKc_VEGFR3, Catalytic domain of the Prot | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 8e-55
Identities = 131/374 (35%), Positives = 196/374 (52%), Gaps = 19/374 (5%)
Query: 6 NKLVGVVPTTIFNVSTLNSLYLQNVQL-----------QNLEELLLWGNNFSGTIPSFIF 54
N LVG +P ++ N+++L L L + QL ++L+ + L NN SG IP I
Sbjct: 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233
Query: 55 NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKY 114
+ L+ L+L N+ G IP++ GNL+NL L L N L+ P S+ + + L
Sbjct: 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-----SIFSLQKLIS 288
Query: 115 FSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGS 174
S+NSL G +P + L Q++EI + S N +G IP +++L L + L NK +G
Sbjct: 289 LDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347
Query: 175 IPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLR 234
IP LGK L +L+L N L G IP+ LC LF+L L SN L G +P S G +LR
Sbjct: 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407
Query: 235 SLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGV 293
+ L N + +PS L + +L++S+N G + ++ L + L+ N F G
Sbjct: 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467
Query: 294 IPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLK 353
+P + G K L+ L L N+ G++P +G L L L LS N LSG IP L L
Sbjct: 468 LPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526
Query: 354 DINVSFNKLEGEIP 367
+++S N+L G+IP
Sbjct: 527 SLDLSHNQLSGQIP 540
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 9e-55
Identities = 162/542 (29%), Positives = 247/542 (45%), Gaps = 64/542 (11%)
Query: 5 FNKLVGVVPTTIFNVSTLNSLYL--QNV---------QLQNLEELLLWGNNFSGTIPSFI 53
+N L G +P I +++LN L L N+ L+NL+ L L+ N SG IP I
Sbjct: 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280
Query: 54 FNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLK 113
F+ KL L+L NS G IP L+NL L L N T P L+SL + L+
Sbjct: 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA--LTSLPRLQVLQ 338
Query: 114 YFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNG 173
+S N G +P+ +G ++ + + + N++G IPE + + NL + L N L G
Sbjct: 339 LWS---NKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394
Query: 174 SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNL 233
IP +LG + L+ + L+ N G +P + +L ++ LD+ +N L G + + ++ +L
Sbjct: 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454
Query: 234 RSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGV 293
+ L L N+ K + L+LS N F+G +P ++G+L L+++ LS N SG
Sbjct: 455 QMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE 514
Query: 294 IPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLK 353
IP + K L L L +N+L G IP S ++ L LDLS N LSG IP +L + L
Sbjct: 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574
Query: 354 DINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQ-VPPCRTRIHHTSR------ 406
+N+S N L G +P G+F A + GN LCG +PPC+ S
Sbjct: 575 QVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITC 634
Query: 407 ----------KNGLLIGIRRLTYLELFQATN-------------------------GFSE 431
+ IR LEL + N E
Sbjct: 635 TLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITINDILSSLKE 694
Query: 432 NNLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIIS 490
N+I RG G YK + I GM+ VK + + + M ++H N++K+I
Sbjct: 695 ENVISRGKKGASYKGKSIKNGMQFVVKEIN-DVNSIPSSEIAD---MGKLQHPNIVKLIG 750
Query: 491 SC 492
C
Sbjct: 751 LC 752
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (478), Expect = 2e-50
Identities = 129/341 (37%), Positives = 180/341 (52%), Gaps = 10/341 (2%)
Query: 31 QLQNLEELLLWGNNFSGTIPSFIFN-ASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLN 89
+L ++ + L N SG IP IF +S L L L N+F G IP G++ NL L L+
Sbjct: 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLS 148
Query: 90 DNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISG 149
+N L+ P N + S S+ LK N L G +P ++ NL+ S+E + S + G
Sbjct: 149 NNMLSGEIP--NDIGSFSS---LKVLDLGGNVLVGKIPNSLTNLT-SLEFLTLASNQLVG 202
Query: 150 GIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAAL 209
IP E+ + +L IYLG N L+G IP +G L L L+L YN L G IP L L L
Sbjct: 203 QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262
Query: 210 FQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTG 268
L L NKLSG +P S +L L SL L N ++ IP ++ L+++ L+L SN FTG
Sbjct: 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322
Query: 269 PLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINL 328
+P+ + +L L + L N FSG IP +G +L L L N L G IP+ + NL
Sbjct: 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382
Query: 329 KSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPRE 369
L L +N+L G IP SL L+ + + N GE+P E
Sbjct: 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 5e-50
Identities = 125/331 (37%), Positives = 184/331 (55%), Gaps = 10/331 (3%)
Query: 40 LWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIP-NTFGNLRNLNRLGLNDNYLTSSTP 98
L G N SG I S IF + + L N G IP + F +L L L++N T S P
Sbjct: 76 LSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP 135
Query: 99 KLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNL 158
+ S+ N L+ SNN L G +P IG+ S S+++ + + G IP ++NL
Sbjct: 136 R----GSIPN---LETLDLSNNMLSGEIPNDIGSFS-SLKVLDLGGNVLVGKIPNSLTNL 187
Query: 159 TNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNK 218
T+L + L N+L G IP LG+++ L+ + L YN L G IP ++ L +L LDL N
Sbjct: 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247
Query: 219 LSGFVPASFGNLTNLRSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNL 277
L+G +P+S GNL NL+ L L N+++ IP ++ +L+ ++ L+LS N +G +P + L
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307
Query: 278 KVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNN 337
+ L + L NNF+G IP+ + L LQ L L N+ G IP ++G NL LDLS NN
Sbjct: 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367
Query: 338 LSGIIPISLEKLLDLKDINVSFNKLEGEIPR 368
L+G IP L +L + + N LEGEIP+
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 5e-44
Identities = 133/374 (35%), Positives = 185/374 (49%), Gaps = 41/374 (10%)
Query: 4 SFNKLVGVVPTTIFNVS-TLNSLYLQNVQ---------LQNLEELLLWGNNFSGTIPSFI 53
S N+L G +P IF S +L L L N + NLE L L N SG IP+ I
Sbjct: 101 SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDI 160
Query: 54 FNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLK 113
+ S L L+L N G IPN+ NL + L+
Sbjct: 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTS-----------------------------LE 191
Query: 114 YFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNG 173
+ + ++N L G +PR +G + +S++ ++ N+SG IP EI LT+L + L N L G
Sbjct: 192 FLTLASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250
Query: 174 SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNL 233
IP +LG L+ LQ L L N+L G IP + L L LDL N LSG +P L NL
Sbjct: 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310
Query: 234 RSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSG 292
LHL SN T IP L +L + L L SN F+G +P +G L +DLS NN +G
Sbjct: 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370
Query: 293 VIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDL 352
IP + +L L L N L+G IP S+G +L+ + L +N+ SG +P KL +
Sbjct: 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430
Query: 353 KDINVSFNKLEGEI 366
+++S N L+G I
Sbjct: 431 YFLDISNNNLQGRI 444
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 2e-42
Identities = 120/346 (34%), Positives = 174/346 (50%), Gaps = 31/346 (8%)
Query: 52 FIFNASKLSRLELQMN-SFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCK 110
N S L EL++ SF I + L N N +S+ L + +N
Sbjct: 19 LFLNFSMLHAEELELLLSFKSSINDPLKYLSNWN---------SSADVCLWQGITCNNSS 69
Query: 111 YLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLT-NLIAIYLGGN 169
+ S ++ G + AI L ++ + + +SG IP++I + +L + L N
Sbjct: 70 RVVSIDLSGKNISGKISSAIFRLP-YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128
Query: 170 KLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGN 229
GSIP G + L+ L+L N L G IP+D+ ++L LDLG N L G +P S N
Sbjct: 129 NFTGSIP--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186
Query: 230 LTNLRSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMN 288
LT+L L L SNQ+ IP L +K + ++ L N +G +P EIG L L +DL N
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246
Query: 289 NFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEK 348
N +G IP ++G LK+LQYLFL N+L G IP SI L L SLDLS+N+LSG IP + +
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306
Query: 349 LLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQV 394
L +L+ +++ N G+IP L +P LQV
Sbjct: 307 LQNLEILHLFSNNFTGKIPVA----------------LTSLPRLQV 336
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 3e-16
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 24/139 (17%)
Query: 259 LNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSI 318
L L + G +P +I L+ L I+LS N+ G IP ++G + L+ L L YN GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 319 PDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAE 378
P+S+G L +L+ L+L+ N+LSG +P +L G + N
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL-----------------GGRLLHRASFN---- 521
Query: 379 SFKGNELLCGMPNLQVPPC 397
F N LCG+P L C
Sbjct: 522 -FTDNAGLCGIPGL--RAC 537
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 5e-16
Identities = 43/96 (44%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 149 GGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAA 208
G IP +IS L +L +I L GN + G+IP +LG + L++L+L YN GSIP+ L +L +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 209 LFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT 244
L L+L N LSG VPA+ G R LH S T
Sbjct: 492 LRILNLNGNSLSGRVPAALGG----RLLHRASFNFT 523
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 79.6 bits (196), Expect = 8e-16
Identities = 93/275 (33%), Positives = 132/275 (48%), Gaps = 12/275 (4%)
Query: 94 TSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPE 153
SS L SSLS L S S S + NL + + N
Sbjct: 54 LSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGS-ENLLNLLPLPSLD--LNLNRLRSNIS 110
Query: 154 EISNLTNLIAIYLGGNKLNGSIPIALGKL-QKLQLLNLEYNQLEGSIPDDLCRLAALFQL 212
E+ LTNL ++ L N + IP +G L L+ L+L N++E S+P L L L L
Sbjct: 111 ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNL 168
Query: 213 DLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPL 272
DL N LS P NL+NL +L L N+I+ +P + L + L+LS+N L
Sbjct: 169 DLSFNDLSDL-PKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLS 226
Query: 273 EIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLD 332
+ NLK L ++LS NN +P +IG L +L+ L L N++ S S+G L NL+ LD
Sbjct: 227 SLSNLKNLSGLELS-NNKLEDLPESIGNLSNLETLDLSNNQI--SSISSLGSLTNLRELD 283
Query: 333 LSNNNLSGIIP-ISLEKLLDLKDINVSFNKLEGEI 366
LS N+LS +P I+L LL +N+ E+
Sbjct: 284 LSGNSLSNALPLIALLLLLLELLLNLLLTLKALEL 318
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 1e-12
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 246 IPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQ 305
IP+ + L+ + +NLS N G +P +G++ L +DLS N+F+G IP ++G L L+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 306 YLFLEYNRLQGSIPDSIGD-LINLKSLDLSNN-NLSGI 341
L L N L G +P ++G L++ S + ++N L GI
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 6e-12
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 171 LNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNL 230
L G IP + KL+ LQ +NL N + G+IP L + +L LDL N +G +P S G L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489
Query: 231 TNLRSLHLGSNQITS-IPSTL 250
T+LR L+L N ++ +P+ L
Sbjct: 490 TSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 5e-11
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 188 LNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT-SI 246
L L+ L G IP+D+ +L L ++L N + G +P S G++T+L L L N SI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 247 PSTLLNLKDILYLNLSSNFFTGPLPLEIG 275
P +L L + LNL+ N +G +P +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 46/165 (27%)
Query: 478 KHIRHRNL------------IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGY 525
K+ HR+L +KI +DFG+++ L +D + I +
Sbjct: 121 KNFIHRDLAARNCLVGENLVVKI----------SDFGLSR-DLYDDDYYRKRGGKLPIRW 169
Query: 526 MAPEYGREGRVSTNGDVYSFGIMLIETFTR-KKPTDEIFSGEMTLKHWVNDLLPISVMKV 584
MAPE +EG+ ++ DV+SFG++L E FT ++P + V++
Sbjct: 170 MAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEQPYPGM--------------SNEEVLEY 215
Query: 585 VDA-HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ + L Q C +++L ++C E PE+R E+
Sbjct: 216 LKNGYRLPQPPN-------CPPELYDLMLQCWAEDPEDRPTFSEL 253
|
Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 7e-10
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 5/177 (2%)
Query: 226 SFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKI-D 284
+ NL L SL L N++ S S LL L ++ L+L +N T +P IG LK +K D
Sbjct: 88 NLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELD 146
Query: 285 LSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPI 344
LS N +P + L +L+ L L +N L +P + +L NL +LDLS N +S +P
Sbjct: 147 LSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPP 203
Query: 345 SLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPCRTRI 401
+E L L+++++S N + + + +N N+L ++ +
Sbjct: 204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETL 260
|
Length = 394 |
| >gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 55/170 (32%)
Query: 478 KHIRHRNL------------IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGY 525
K+ HR+L +KI +DFG+++ + ++D + I +
Sbjct: 121 KNFVHRDLAARNCLVTENLVVKI----------SDFGLSRDIYEDDYYRKRGGGKLPIKW 170
Query: 526 MAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVV 585
MAPE ++G+ ++ DV+SFG++L E FT GE P M
Sbjct: 171 MAPESLKDGKFTSKSDVWSFGVLLWEIFTL---------GEQ----------PYPGMSN- 210
Query: 586 DAHLLSQEDKHFVIKGQ-------CVSFVFNLAMKCTVESPEERVNAKEI 628
+E + G C ++ L ++C PE+R E+
Sbjct: 211 ------EEVLELLEDGYRLPRPENCPDELYELMLQCWAYDPEDRPTFSEL 254
|
Length = 258 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 116 SFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSI 175
N L G +P I L + ++ + +I G IP + ++T+L + L N NGSI
Sbjct: 424 GLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 176 PIALGKLQKLQLLNLEYNQLEGSIP 200
P +LG+L L++LNL N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 43/164 (26%)
Query: 478 KHIRHRNL------------IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGY 525
K HR+L +KI +DFG+++ + +D +T I +
Sbjct: 124 KKFVHRDLAARNCLVGEDLVVKI----------SDFGLSRDVYDDDYYRKKTGGKLPIRW 173
Query: 526 MAPEYGREGRVSTNGDVYSFGIMLIETFTR-KKPTDEIFSGEMTLKHWVNDLLPISVMKV 584
MAPE ++G ++ DV+SFG++L E FT P + + E+ L++ +
Sbjct: 174 MAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEV-LEY------------L 220
Query: 585 VDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ L + + C ++ L + C PE+R E+
Sbjct: 221 RKGYRLPKPEY-------CPDELYELMLSCWQLDPEDRPTFSEL 257
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262 |
| >gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 44/164 (26%)
Query: 478 KHIRHRNL------------IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGY 525
K+ HR+L +KI +DFG+++ L +D I +
Sbjct: 122 KNFIHRDLAARNCLVGENLVVKI----------SDFGLSR-DLYDDDYYKVKGGKLPIRW 170
Query: 526 MAPEYGREGRVSTNGDVYSFGIMLIETFTR-KKPTDEIFSGEMTLKHWVNDLLPISVMKV 584
MAPE +EG+ ++ DV+SFG++L E FT ++P M+ ++L +
Sbjct: 171 MAPESLKEGKFTSKSDVWSFGVLLWEIFTLGEEP-----YPGMSNA----EVLE----YL 217
Query: 585 VDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ L + C ++ L ++C E PE+R E+
Sbjct: 218 KKGYRLPKPP-------NCPPELYKLMLQCWAEDPEDRPTFSEL 254
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND 90
+L++L+ + L GN+ G IP + + + L L+L NSF G IP + G L +L L LN
Sbjct: 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499
Query: 91 NYLTSSTP 98
N L+ P
Sbjct: 500 NSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 80/273 (29%), Positives = 115/273 (42%), Gaps = 16/273 (5%)
Query: 13 PTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGF 72
P+ N++ L S + ++L NL L L NN + P S L L+L N
Sbjct: 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IES 154
Query: 73 IPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGN 132
+P+ NL NL L L+ N L+ LSN L S N + LP I
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLSDLPK------LLSNLSNLNNLDLSGNKI-SDLPPEIEL 207
Query: 133 LSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEY 192
LS ++E + + N + +SNL NL + L NKL +P ++G L L+ L+L
Sbjct: 208 LS-ALEELDLSN-NSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSN 264
Query: 193 NQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLN 252
NQ+ S L L L +LDL N LS +P L L L + +T L
Sbjct: 265 NQI--SSISSLGSLTNLRELDLSGNSLSNALPLI--ALLLLLLELLLNLLLTLKALELKL 320
Query: 253 LKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDL 285
+L N+ SN T P + L+ L +
Sbjct: 321 NSILLNNNILSNGETS-SPEALSILESLNNLWT 352
|
Length = 394 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 73/243 (30%), Positives = 110/243 (45%), Gaps = 14/243 (5%)
Query: 32 LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDN 91
L L L L N I S + + L+ L+L N+ P NL L L+DN
Sbjct: 92 LLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN 150
Query: 92 YLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGI 151
+ S S L N LK S N L LP+ + NLS ++ + IS +
Sbjct: 151 KIES------LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLS-NLNNLDLSGNKISD-L 201
Query: 152 PEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQ 211
P EI L+ L + L N + + +L L+ L L L N+LE +P+ + L+ L
Sbjct: 202 PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLET 259
Query: 212 LDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLP 271
LDL +N++S +S G+LTNLR L L N +++ + L +L L L+ L
Sbjct: 260 LDLSNNQISSI--SSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALE 317
Query: 272 LEI 274
L++
Sbjct: 318 LKL 320
|
Length = 394 |
| >gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 21/135 (15%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT--RK 556
ADFGM++ L D +Q + I +MA E G+ +T DV++FG+ L E T R+
Sbjct: 172 ADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCRE 231
Query: 557 KPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQ---CVSFVFNLAMK 613
+P + +T V + +A ++D + + C ++ L ++
Sbjct: 232 QPYE-----HLT-DQQV----------IENAGHFFRDDGRQIYLPRPPNCPKDIYELMLE 275
Query: 614 CTVESPEERVNAKEI 628
C E+R +EI
Sbjct: 276 CWRRDEEDRPTFREI 290
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Query: 86 LGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSC 145
LGL++ L P + +S ++L+ + S NS+ G +P ++G+++ S+E+ +
Sbjct: 423 LGLDNQGLRGFIP-----NDISKLRHLQSINLSGNSIRGNIPPSLGSIT-SLEVLDLSYN 476
Query: 146 NISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALG 180
+ +G IPE + LT+L + L GN L+G +P ALG
Sbjct: 477 SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 41/163 (25%), Positives = 60/163 (36%), Gaps = 42/163 (25%)
Query: 478 KHIRHRNL------------IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGY 525
K I HR+L +K+ ADFG+A+ L + L T + T Y
Sbjct: 116 KGIVHRDLKPENILLDEDGHVKL----------ADFGLAR-QLDPGEKL--TTFVGTPEY 162
Query: 526 MAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVV 585
MAPE D++S G++L E T K P F G+ L +
Sbjct: 163 MAPEVLLGKGYGKAVDIWSLGVILYELLTGKPP----FPGDDQLLELFKKIGKPKPPFPP 218
Query: 586 DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+S E K + K V+ PE+R+ A+E
Sbjct: 219 PEWDISPEAKDLI-------------RKLLVKDPEKRLTAEEA 248
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254 |
| >gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 4e-07
Identities = 51/157 (32%), Positives = 68/157 (43%), Gaps = 25/157 (15%)
Query: 478 KHIRHRNL----IKIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGR 532
I HR+L I + N K ADFG+AK LLK SL T + T YMAPE
Sbjct: 117 NGIIHRDLKPENILL---DENGVVKIADFGLAKKLLKSSSSL--TTFVGTPWYMAPEVLL 171
Query: 533 EGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591
G DV+S G++L E T K P FSGE D L + + +++ L
Sbjct: 172 GGNGYGPKVDVWSLGVILYELLTGKPP----FSGENI-----LDQLQL-IRRILGPPLEF 221
Query: 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
E K + + KC + P +R A+EI
Sbjct: 222 DEPKWSSGSEEAKDLIK----KCLNKDPSKRPTAEEI 254
|
Length = 260 |
| >gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 25/126 (19%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGY--MAPEYGREGRVSTNGDVYSFGIMLIETFTRK 556
ADFG+A+ L+KED + + I Y APE G ST DV+SFGI+L E FT
Sbjct: 146 ADFGLAR-LIKED---VYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYG 201
Query: 557 KPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTV 616
+ +P M + + +C ++ + ++C
Sbjct: 202 Q-------------------VPYPGMNNHEVYDQITAGYRMPCPAKCPQEIYKIMLECWA 242
Query: 617 ESPEER 622
PE+R
Sbjct: 243 AEPEDR 248
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261 |
| >gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 6e-07
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 33/159 (20%)
Query: 478 KHIRHRNLIKIISSCSN----DDFK---ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEY 530
+H HR+L + N D DFGM++ + D + T+ I +M PE
Sbjct: 141 QHFVHRDL-----ATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPES 195
Query: 531 GREGRVSTNGDVYSFGIMLIETFTR-KKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589
+ +T DV+SFG++L E FT K+P + + E V++ +
Sbjct: 196 IMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEE--------------VIECITQGR 241
Query: 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
L Q + C S V+++ + C P++R+N K+I
Sbjct: 242 LLQRPR------TCPSEVYDIMLGCWKRDPQQRINIKDI 274
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280 |
| >gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 478 KHIRHRNLIK---IISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGR- 532
I HR+ +K I+ N K ADFG++K L + + T YMAPE
Sbjct: 111 NGIIHRD-LKPENILLDSDNGKVKLADFGLSKLL--TSDKSLLKTIVGTPAYMAPEVLLG 167
Query: 533 EGRVSTNGDVYSFGIMLIE 551
+G S D++S G++L E
Sbjct: 168 KGYYSEKSDIWSLGVILYE 186
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215 |
| >gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 1e-06
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKP 558
DFGM++ + D + T+ I +M PE + +T DV+SFG++L E FT K
Sbjct: 165 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGK- 223
Query: 559 TDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVES 618
+ W L V++ + + + + C V+++ + C
Sbjct: 224 -----------QPWFQ-LSNTEVIECITQGRVLERPR------VCPKEVYDIMLGCWQRE 265
Query: 619 PEERVNAKEI 628
P++R+N KEI
Sbjct: 266 PQQRLNIKEI 275
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-06
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 280 LIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNL 338
L +DLS N + + L +L+ L L N L P++ L +L+SLDLS NNL
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-06
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 304 LQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKL 362
L+ L L NRL + L NLK LDLS NNL+ I P + L L+ +++S N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 38/139 (27%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLA-TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKK 557
ADFG AK L + ++ T ++ T +MAPE R D++S G +IE T K
Sbjct: 143 ADFGCAK-RLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKP 201
Query: 558 PTDEIFSGEMTLKHWVNDLLPISVMK---------VVDAHLLSQEDKHFVIKGQCVSFVF 608
P W P++ + + H LS+E K F+
Sbjct: 202 P-------------WSELGNPMAALYKIGSSGEPPEIPEH-LSEEAKDFL---------- 237
Query: 609 NLAMKCTVESPEERVNAKE 627
KC P++R A E
Sbjct: 238 ---RKCLRRDPKKRPTADE 253
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260 |
| >gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 9e-06
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 435 IDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKN-FDIECDMMKHIRHRNLIKIISSC 492
+ GG G VY R G +VA+K+ + + E +++K + H N++K+
Sbjct: 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60
Query: 493 SNDDF 497
+++
Sbjct: 61 EDENH 65
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLE 63
S N+ G VP + ++S L L L N SG IP + + KL L+
Sbjct: 483 SRNQFSGAVPRKLGSLSELMQLKLS-------------ENKLSGEIPDELSSCKKLVSLD 529
Query: 64 LQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLD 123
L N G IP +F + L++L L+ N L+ PK +L N + L + S+N L
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK-----NLGNVESLVQVNISHNHLH 584
Query: 124 GILP 127
G LP
Sbjct: 585 GSLP 588
|
Length = 968 |
| >gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 16/132 (12%)
Query: 434 LIDRGGI-GYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIE-CDMM-----KHIRHRNLI 486
L+ +G + Y+ RR + F E D M K HR+L
Sbjct: 90 LMAKGDLKSYLRSRRPE---AENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLA 146
Query: 487 KIISSCS-NDDFK---ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDV 542
+C +D DFGM + + + D + L + +MAPE ++G +T DV
Sbjct: 147 A--RNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDV 204
Query: 543 YSFGIMLIETFT 554
+SFG++L E T
Sbjct: 205 WSFGVVLWEMAT 216
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWV- 573
T+ + Y+APE ++ D+Y FG++LIE T K P D F ++ W
Sbjct: 834 TDTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWAR 893
Query: 574 ----NDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ L + + + + +++ + V NLA+ CT P R A ++
Sbjct: 894 YCYSDCHLDMWIDPSIRGDVSVNQNE--------IVEVMNLALHCTATDPTARPCANDV 944
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 47 GTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSL 106
G IP+ I L + L NS G IP + G++ +L L L+ N S P+ SL
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-----SL 486
Query: 107 SNCKYLKYFSFSNNSLDGILPRAIG 131
L+ + + NSL G +P A+G
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 53/167 (31%)
Query: 478 KHIRHRNL----IKIISSCSNDDFK---ADFGMAKPLLKEDQSLIQTQTLA-TIGYMAPE 529
I HR++ I + D + DFG++ L T+ T +MAPE
Sbjct: 117 NGIIHRDIKAANILL-----TSDGEVKLIDFGLSAQL----SDTKARNTMVGTPYWMAPE 167
Query: 530 YGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVV---- 585
D++S GI IE K P +S +L P+ + +
Sbjct: 168 VINGKPYDYKADIWSLGITAIELAEGKPP----YS----------ELPPMKALFKIATNG 213
Query: 586 -----DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627
+ S E K F+ KC ++PE+R A++
Sbjct: 214 PPGLRNPEKWSDEFKDFLK-------------KCLQKNPEKRPTAEQ 247
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253 |
| >gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 500 DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
DFG+A+ + K D + + L + +MAPE +G+ +T DV+SFG+++ E T
Sbjct: 154 DFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILT 208
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269 |
| >gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
ADFG+A+ ++KED + I + APE R S DV+SFGI+L E T
Sbjct: 145 ADFGLAR-VIKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVT 199
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261 |
| >gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 2e-05
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 27/134 (20%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKP 558
+D G+++ + D +Q ++L I +M PE G+ S++ D++SFG++L E F+
Sbjct: 166 SDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQ 225
Query: 559 TDEIFSG----EMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKC 614
FS EM K LLP S ED C +++L +C
Sbjct: 226 PYYGFSNQEVIEMVRKR---QLLPCS------------ED--------CPPRMYSLMTEC 262
Query: 615 TVESPEERVNAKEI 628
E P R K+I
Sbjct: 263 WQEGPSRRPRFKDI 276
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283 |
| >gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 2e-05
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKP 558
DFGM + + + D + L + +M+PE ++G +T DV+SFG++L E T +
Sbjct: 161 GDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQ 220
Query: 559 TDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVES 618
+ S E L+ V++ LL + D C +F L C +
Sbjct: 221 PYQGMSNEQVLRF------------VMEGGLLDKPD-------NCPDMLFELMRMCWQYN 261
Query: 619 PEERVNAKEI 628
P+ R + EI
Sbjct: 262 PKMRPSFLEI 271
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 3e-05
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 212 LDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLL-NLKDILYLNLSSN 264
LDL +N+L+ +F L NL+ L L N +TSI L + L+LS N
Sbjct: 5 LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
|
Length = 60 |
| >gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 52/168 (30%)
Query: 478 KHIRHR-----NL-------IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQT-LATIG 524
+HI HR NL +KI ADFG++K L + +L Q T + T+
Sbjct: 119 RHIIHRDIKPSNLLINSKGEVKI----------ADFGISKVL---ENTLDQCNTFVGTVT 165
Query: 525 YMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFS-----GEMTLKHWVNDLLPI 579
YM+PE + S D++S G+ L+E K P F L + D P
Sbjct: 166 YMSPERIQGESYSYAADIWSLGLTLLECALGKFP----FLPPGQPSFFELMQAICDGPPP 221
Query: 580 SVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627
S + A S E + F+ C + P++R +A E
Sbjct: 222 S----LPAEEFSPEFRDFIS-------------ACLQKDPKKRPSAAE 252
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 4e-05
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 184 KLQLLNLEYNQLEGSIPDDLCR-LAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQ 242
L+ L+L N+L IPD + L L LDL N L+ P +F L +LRSL L N
Sbjct: 1 NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 243 I 243
+
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 25/151 (16%)
Query: 477 MKHIRHRNL-IKIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLAT-IGYMAPEYGRE 533
K HR+L + I S+D K DFG+ + L + + + + L + APE R
Sbjct: 115 SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRT 174
Query: 534 GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA--HLLS 591
S DV+ FG+ L E FT GE L ++K +D L
Sbjct: 175 RTFSHASDVWMFGVTLWEMFT---------YGEEPWAG----LSGSQILKKIDKEGERLE 221
Query: 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEER 622
+ + C ++N+ ++C +P +R
Sbjct: 222 RPE-------ACPQDIYNVMLQCWAHNPADR 245
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257 |
| >gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 36/155 (23%)
Query: 480 IRHRNLIKIISSCSNDDFKADFGMAKPL-LKEDQSLIQTQTLATIGYMAPEYGREGRVST 538
+ +L+KI +DFG+AK L +D ++ + I + APE R + S+
Sbjct: 142 VESEDLVKI----------SDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSS 191
Query: 539 NGDVYSFGIMLIETFTRKKPTDE----------IFSGEMTLKHWVNDLLPISVMKVVDAH 588
DV+SFG+ L E FT P+ I G+M + + L
Sbjct: 192 ASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKE--------GE 243
Query: 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERV 623
L + C V++L C P++R
Sbjct: 244 RLPRPPS-------CPDEVYDLMKLCWEAEPQDRP 271
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284 |
| >gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
ADFG+A+ L+++D+ + I + APE GR + DV+SFGI+L E T
Sbjct: 145 ADFGLAR-LIEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVT 199
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261 |
| >gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 4e-05
Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 39/158 (24%)
Query: 478 KHIRHRNLI--KIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATI--GYMAPEYGRE 533
KH HR+L + + N +DFGM++ +ED T + I + APE
Sbjct: 113 KHCIHRDLAARNCLVTEKNVLKISDFGMSRE--EEDGVYASTGGMKQIPVKWTAPEALNY 170
Query: 534 GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593
GR S+ DV+SFGI+L E F S+ V A+L +Q+
Sbjct: 171 GRYSSESDVWSFGILLWEAF--------------------------SLGAVPYANLSNQQ 204
Query: 594 DKHFVIKG-------QCVSFVFNLAMKCTVESPEERVN 624
+ + +G C V+ L +C P +R +
Sbjct: 205 TREAIEQGVRLPCPELCPDAVYRLMERCWEYDPGQRPS 242
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252 |
| >gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
ADFGMA+ + + + + I +M PE +G ++ DV+SFG++L E F+
Sbjct: 161 ADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFS 216
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277 |
| >gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 465 EAFKNFDIE-CDMMKHIR-----HRNLI--KIISSCSNDDFKADFGMAKPLLKEDQSLIQ 516
+ F ++ C+ M+++ HR+L ++ S N +DFG+ K + S Q
Sbjct: 102 DCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTK-----EASSTQ 156
Query: 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
+ + APE RE + ST DV+SFGI+L E ++
Sbjct: 157 DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYS 194
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256 |
| >gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 24/126 (19%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKP 558
ADFG+A+ L+++++ + I + APE GR + DV+SFGI+L E T+ +
Sbjct: 144 ADFGLAR-LIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR- 201
Query: 559 TDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVI--KGQCVSFVFNLAMKCTV 616
+P M V+ +L Q ++ + + +C + +L +C
Sbjct: 202 ------------------VPYPGM--VNREVLDQVERGYRMPCPPECPESLHDLMCQCWR 241
Query: 617 ESPEER 622
+ PEER
Sbjct: 242 KEPEER 247
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262 |
| >gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 7e-05
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 437 RGGIGYVYK-RRIHYGMEVAVKVFDLQYREAF-KNFDIECDMMKHIRHRNLIKIISSCSN 494
G G VY R G VA+KV + + + E ++K ++H N++++ +
Sbjct: 9 EGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRLYDVFED 68
Query: 495 DDF 497
+D
Sbjct: 69 EDK 71
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254 |
| >gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 8e-05
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 478 KHIRHRNLIKIISSCSNDDFK--ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535
K+ HR+L S D +DFG+AK + S Q + + APE RE +
Sbjct: 121 KNFVHRDLAARNVLVSEDLVAKVSDFGLAK-----EASQGQDSGKLPVKWTAPEALREKK 175
Query: 536 VSTNGDVYSFGIMLIETFT 554
ST DV+SFGI+L E ++
Sbjct: 176 FSTKSDVWSFGILLWEIYS 194
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256 |
| >gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.7 bits (104), Expect = 9e-05
Identities = 34/164 (20%), Positives = 53/164 (32%), Gaps = 24/164 (14%)
Query: 478 KHIRHRNLIK---IISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLA----TIGYMAPEY 530
K I HR++ ++ DFG+AK L + + T GYMAPE
Sbjct: 120 KGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEV 179
Query: 531 ---GREGRVSTNGDVYSFGIMLIETFTRKKP---TDEIFSGEMTLKHWVNDLLPISVMKV 584
S++ D++S GI L E T P + TLK + P
Sbjct: 180 LLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTP------ 233
Query: 585 VDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+L K + P+ R+++
Sbjct: 234 -----SLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSD 272
|
Length = 384 |
| >gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 23/99 (23%)
Query: 477 MKHIRHRNL------------IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIG 524
K + HR+L +KI DFG+AK L +++ I
Sbjct: 127 EKRLVHRDLAARNVLVKTPQHVKI----------TDFGLAKLLDVDEKEYHAEGGKVPIK 176
Query: 525 YMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEI 562
+MA E + DV+S+G+ + E T KP + I
Sbjct: 177 WMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGI 215
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 1e-04
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 160 NLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKL 219
NL ++ L N+L A L L++L+L N L P+ L +L LDL N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATI--GYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
+DFGM++ +ED + + L I + APE GR S+ DV+S+GI+L ETF+
Sbjct: 135 SDFGMSR---QEDDGIYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFS 189
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250 |
| >gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLA-TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKK 557
DFG+AK L E +T T T Y+APE D +S G++L E T K
Sbjct: 135 TDFGLAKELSSEGS---RTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKP 191
Query: 558 P 558
P
Sbjct: 192 P 192
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250 |
| >gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 500 DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKK 557
DFGM++ + D + +T+ I +M PE + +T D++SFG++L E FT K
Sbjct: 165 DFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGK 222
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280 |
| >gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR-KK 557
+DFGM + +L +DQ T T + + +PE + S+ DV+SFG+++ E F+ K
Sbjct: 142 SDFGMTRFVL-DDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKT 200
Query: 558 PTDEIFSGEM 567
P + + E+
Sbjct: 201 PYENRSNSEV 210
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256 |
| >gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 437 RGGIGYVYK-RRIHYGMEVAVKVFDLQYR--EAFKNFDIECDMMKHIRHRNLIKIISSCS 493
G G VYK + G VAVK+ + + + E +++ + H N++++I +
Sbjct: 9 SGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLIDAFE 68
Query: 494 NDD 496
+ D
Sbjct: 69 DKD 71
|
Length = 260 |
| >gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT--RK 556
ADFGM++ L D IQ + + I +M+ E G+ +T DV++FG+ L E T ++
Sbjct: 172 ADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKE 231
Query: 557 KP----TDE 561
+P +DE
Sbjct: 232 QPYSQLSDE 240
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296 |
| >gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLAT----IGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
+DFGM++ E++ I T + I + APE GR ++ DV+S+GI+L ETF+
Sbjct: 135 SDFGMSR----EEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFS 190
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251 |
| >gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 22/137 (16%)
Query: 495 DDFK---ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIE 551
DF DFGM + + + D + L + +MAPE ++G +T+ D++SFG++L E
Sbjct: 154 HDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWE 213
Query: 552 TFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLA 611
+ + + S E LK V+D L Q D C V +L
Sbjct: 214 ITSLAEQPYQGLSNEQVLKF------------VMDGGYLDQPD-------NCPERVTDLM 254
Query: 612 MKCTVESPEERVNAKEI 628
C +P+ R EI
Sbjct: 255 RMCWQFNPKMRPTFLEI 271
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288 |
| >gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 34/131 (25%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKP 558
+DFG+A+ +L +DQ T + + PE R S+ DV+SFG+++ E F+
Sbjct: 142 SDFGLARYVL-DDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFS---- 196
Query: 559 TDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG-------QCVSFVFNLA 611
G+M + + N +VV++ V G + V+ +
Sbjct: 197 -----EGKMPYERFSN-------SEVVES----------VSAGYRLYRPKLAPTEVYTIM 234
Query: 612 MKCTVESPEER 622
C E PE+R
Sbjct: 235 YSCWHEKPEDR 245
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256 |
| >gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 500 DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
DFG+++ + D +Q+++L + +M PE G+ +T D++SFG++L E F+
Sbjct: 167 DFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFS 221
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283 |
| >gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 500 DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
DFG+A+ ++++ + + T + +MAPE +T DV+SFGI+L E FT
Sbjct: 282 DFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFT 336
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-DD induce PDGFR beta homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR beta signaling leads to a variety of cellular effects including the stimulation of cell growth and chemotaxis, as well as the inhibition of apoptosis and GAP junctional communication. It is critical in normal angiogenesis as it is involved in the recruitment of pericytes and smooth muscle cells essential for vessel stability. Aberrant PDGFR beta expression is associated with some human cancers. The continuously-active fusion proteins of PDGFR beta with COL1A1 and TEL are associated with dermatofibrosarcoma protuberans (DFSP) and a subset of chronic myelomonocytic leukemia (CMML), respectively. Length = 401 |
| >gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 4e-04
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 29/125 (23%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKP 558
ADFGM++ L D IQ + + I +MA E G+ +T DV++FG+ L E FT K
Sbjct: 171 ADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKE 230
Query: 559 TDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQ---------CVSFVFN 609
P S++ D ++ + F +G+ C S VF
Sbjct: 231 Q------------------PYSLLS--DEQVIENTGEFFRNQGRQIYLSQTPLCPSPVFK 270
Query: 610 LAMKC 614
L M+C
Sbjct: 271 LMMRC 275
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295 |
| >gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 499 ADFGMAKPLLKE--DQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRK 556
ADFG A L + Q Q L TI +MAPE R + + DV+S G ++IE T K
Sbjct: 146 ADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAK 205
Query: 557 KP 558
P
Sbjct: 206 PP 207
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268 |
| >gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 478 KHIRHRNLIKI--ISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREG 534
KH+ HR+ IK I CSN K DFG +K + T Y+APE R
Sbjct: 162 KHMIHRD-IKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRK 220
Query: 535 RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVN--DLLPISV---MKVVDAHL 589
S D++S G++L E T K+P D E+ K D LP S+ M+ + L
Sbjct: 221 PYSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYDPLPPSISPEMQEIVTAL 280
Query: 590 LSQEDK 595
LS + K
Sbjct: 281 LSSDPK 286
|
Length = 496 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 7e-04
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 23/83 (27%)
Query: 232 NLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFS 291
NL+SL L +N++T IP L L +DLS NN +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFK-----------------------GLPNLKVLDLSGNNLT 37
Query: 292 GVIPITIGYLKDLQYLFLEYNRL 314
+ P L L+ L L N L
Sbjct: 38 SISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 7e-04
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKK 557
ADFG+A+ L+++++ + I + APE GR + DV+SFGI+L E T+ +
Sbjct: 144 ADFGLAR-LIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGR 201
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260 |
| >gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 7e-04
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKK 557
ADFG+A+ L+++++ + I + APE GR + DV+SFGI+L E T+ +
Sbjct: 144 ADFGLAR-LIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGR 201
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260 |
| >gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 8e-04
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR-KK 557
DFGM++ + D + T+ I +M PE + +T DV+S G++L E FT K+
Sbjct: 162 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQ 221
Query: 558 PTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVE 617
P ++ + E V++ + + Q + C V++L + C
Sbjct: 222 PWYQLSNNE--------------VIECITQGRVLQRPR------TCPKEVYDLMLGCWQR 261
Query: 618 SPEERVNAKEI 628
P R+N KEI
Sbjct: 262 EPHMRLNIKEI 272
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288 |
| >gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 9e-04
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 20/124 (16%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKP 558
ADFG+A+ L+++++ + I + APE G + DV+SFGI+L E T +
Sbjct: 144 ADFGLAR-LIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGR- 201
Query: 559 TDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVES 618
I MT + +L M D C ++ L C E
Sbjct: 202 ---IPYPGMTNPEVIQNLERGYRMPRPDN---------------CPEELYELMRLCWKEK 243
Query: 619 PEER 622
PEER
Sbjct: 244 PEER 247
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLS 60
+ S NKL G +P + + L SL L + N SG IP+ LS
Sbjct: 504 LKLSENKLSGEIPDELSSCKKLVSLDLSH-------------NQLSGQIPASFSEMPVLS 550
Query: 61 RLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTP 98
+L+L N G IP GN+ +L ++ ++ N+L S P
Sbjct: 551 QLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 17/60 (28%), Positives = 23/60 (38%)
Query: 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYL 93
NL+ L L N + L L+L N+ P F L +L L L+ N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLAT--IGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRK 556
ADFG+A+ + ++ + T A + +MA E + + +T DV+SFG++L E TR
Sbjct: 140 ADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRG 199
Query: 557 KP 558
P
Sbjct: 200 AP 201
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262 |
| >gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 20/124 (16%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKP 558
+DFGM + +L +D+ + + + PE + S+ DV+SFG+++ E FT
Sbjct: 142 SDFGMTRYVL-DDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTE--- 197
Query: 559 TDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVES 618
G+M + N +VV+ +S+ + + K ++ V+ + C E
Sbjct: 198 ------GKMPFEKKSN-------YEVVEM--ISRGFRLYRPKLASMT-VYEVMYSCWHEK 241
Query: 619 PEER 622
PE R
Sbjct: 242 PEGR 245
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256 |
| >gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.001
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 25/136 (18%)
Query: 487 KIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFG 546
KI+ C DFG+A+ ++ + + + T + +MAPE + +T DV+S+G
Sbjct: 274 KIVKIC-------DFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYG 326
Query: 547 IMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSF 606
I+L E F+ + G + + N K+ + +++ D
Sbjct: 327 ILLWEIFSLG---GTPYPGMIVDSTFYN--------KIKSGYRMAKPD-------HATQE 368
Query: 607 VFNLAMKCTVESPEER 622
V+++ +KC PE+R
Sbjct: 369 VYDIMVKCWNSEPEKR 384
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR alpha signaling is important in the formation of lung alveoli, intestinal villi, mesenchymal dermis, and hair follicles, as well as in the development of oligodendrocytes, retinal astrocytes, neural crest cells, and testicular cells. Aberrant PDGFR alpha expression is associated with some human cancers. Mutations in PDGFR alpha have been found within a subset of gastrointestinal stromal tumors (GISTs). An active fusion protein FIP1L1-PDGFR alpha, derived from interstitial deletion, is associated with idiopathic hypereosinophilic syndrome (HES) and chronic eosinophilic leukemia (CEL). Length = 400 |
| >gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 500 DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
DFG+A+ ++ + +++ + +MAPE + DV+S+GI+L E F+
Sbjct: 184 DFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFS 238
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302 |
| >gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT--RK 556
ADFGM++ L D IQ + + I +MA E G+ +T DV++FG+ L E ++
Sbjct: 180 ADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKE 239
Query: 557 KP----TDE 561
+P TDE
Sbjct: 240 QPYGELTDE 248
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304 |
| >gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 304 LQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPIS 345
L+ L L N++ +P + +L NL++LDLS N ++ + P+S
Sbjct: 3 LETLDLSNNQIT-DLP-PLSNLPNLETLDLSGNKITDLSPLS 42
|
Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43 |
| >gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 231 TNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLE 273
TNL +L L +NQIT +P L NL ++ L+LS N T PL
Sbjct: 1 TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSPLS 42
|
Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43 |
| >gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL 577
L + ++APE +E ST DV+SFG+++ E FT GE+ ++
Sbjct: 177 NALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFT---------QGELPFYGLSDE-- 225
Query: 578 PISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+V++ L + C S ++ L +C +P++R + E+
Sbjct: 226 -----EVLNR--LQAGKLELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSEL 269
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275 |
| >gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.004
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 478 KHIRHRNLI--KIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535
K + HR+L I+ S +DFG+A+ S+ + + + APE + +
Sbjct: 119 KKLVHRDLAARNILVSEDGVAKVSDFGLARV-----GSMGVDNSKLPVKWTAPEALKHKK 173
Query: 536 VSTNGDVYSFGIMLIETFT 554
S+ DV+S+G++L E F+
Sbjct: 174 FSSKSDVWSYGVLLWEVFS 192
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254 |
| >gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 32/161 (19%)
Query: 472 IECDMM----KHIRHRNLIKIISSCSNDDFK--ADFGMAKPLLKEDQSLIQTQTLAT--I 523
+ M KH HR+L N +DFGM++ L + T +
Sbjct: 104 VAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRAL-GAGSDYYRATTAGRWPL 162
Query: 524 GYMAPEYGREGRVSTNGDVYSFGIMLIETFTR-KKPTDEIFSGEMTLKHWVNDLLPISVM 582
+ APE G+ S+ DV+S+G+ L E F+ KP E+ E V+
Sbjct: 163 KWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAE--------------VI 208
Query: 583 KVVD-AHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEER 622
+++ L + ++ C ++++ + C PE+R
Sbjct: 209 AMLESGERLPRPEE-------CPQEIYSIMLSCWKYRPEDR 242
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257 |
| >gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.004
Identities = 17/56 (30%), Positives = 34/56 (60%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
+DFG+++ + +ED + +++ + +MA E + +T DV+SFG++L E T
Sbjct: 169 SDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVT 224
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290 |
| >gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 435 IDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISS 491
I G G VYK R I G VA+KV L+ + F+ E M+K RH N++ S
Sbjct: 11 IGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGS 68
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262 |
| >gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 499 ADFGMAKPL-LKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
DFG+ K L ++ ++ + I + APE E + S DV+SFG++L E FT
Sbjct: 150 GDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 206
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284 |
| >gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.004
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 482 HRNLI--KIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTN 539
HR+L I+ S +N DFG+A+ + K+ + + + +MAPE + +T
Sbjct: 197 HRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQ 256
Query: 540 GDVYSFGIMLIETFT 554
DV+SFG++L E F+
Sbjct: 257 SDVWSFGVLLWEIFS 271
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 628 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0575 | 592 | consensus Polo-like serine/threonine protein kinas | 99.97 | |
| KOG0593 | 396 | consensus Predicted protein kinase KKIAMRE [Genera | 99.97 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0581 | 364 | consensus Mitogen-activated protein kinase kinase | 99.97 | |
| KOG0615 | 475 | consensus Serine/threonine protein kinase Chk2 and | 99.97 | |
| KOG0192 | 362 | consensus Tyrosine kinase specific for activated ( | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0197 | 468 | consensus Tyrosine kinases [Signal transduction me | 99.97 | |
| KOG0595 | 429 | consensus Serine/threonine-protein kinase involved | 99.96 | |
| KOG1026 | 774 | consensus Nerve growth factor receptor TRKA and re | 99.96 | |
| KOG0591 | 375 | consensus NIMA (never in mitosis)-related G2-speci | 99.96 | |
| KOG0659 | 318 | consensus Cdk activating kinase (CAK)/RNA polymera | 99.96 | |
| KOG0201 | 467 | consensus Serine/threonine protein kinase [Signal | 99.96 | |
| KOG0600 | 560 | consensus Cdc2-related protein kinase [Cell cycle | 99.96 | |
| KOG0033 | 355 | consensus Ca2+/calmodulin-dependent protein kinase | 99.95 | |
| KOG0597 | 808 | consensus Serine-threonine protein kinase FUSED [G | 99.95 | |
| KOG4721 | 904 | consensus Serine/threonine protein kinase, contain | 99.95 | |
| KOG0663 | 419 | consensus Protein kinase PITSLRE and related kinas | 99.95 | |
| KOG0661 | 538 | consensus MAPK related serine/threonine protein ki | 99.95 | |
| KOG0193 | 678 | consensus Serine/threonine protein kinase RAF [Sig | 99.95 | |
| KOG0578 | 550 | consensus p21-activated serine/threonine protein k | 99.95 | |
| KOG0598 | 357 | consensus Ribosomal protein S6 kinase and related | 99.95 | |
| KOG1095 | 1025 | consensus Protein tyrosine kinase [Signal transduc | 99.95 | |
| KOG0660 | 359 | consensus Mitogen-activated protein kinase [Signal | 99.95 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 99.94 | |
| KOG0582 | 516 | consensus Ste20-like serine/threonine protein kina | 99.94 | |
| KOG4278 | 1157 | consensus Protein tyrosine kinase [Signal transduc | 99.94 | |
| KOG0588 | 786 | consensus Serine/threonine protein kinase [Cell cy | 99.94 | |
| KOG4257 | 974 | consensus Focal adhesion tyrosine kinase FAK, cont | 99.94 | |
| KOG1094 | 807 | consensus Discoidin domain receptor DDR1 [Signal t | 99.94 | |
| KOG0198 | 313 | consensus MEKK and related serine/threonine protei | 99.94 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.93 | |
| PHA02988 | 283 | hypothetical protein; Provisional | 99.93 | |
| KOG0574 | 502 | consensus STE20-like serine/threonine kinase MST [ | 99.93 | |
| KOG0596 | 677 | consensus Dual specificity; serine/threonine and t | 99.93 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 99.93 | |
| KOG4717 | 864 | consensus Serine/threonine protein kinase [Signal | 99.93 | |
| KOG0577 | 948 | consensus Serine/threonine protein kinase [Signal | 99.93 | |
| KOG0196 | 996 | consensus Tyrosine kinase, EPH (ephrin) receptor f | 99.93 | |
| cd05631 | 285 | STKc_GRK4 Catalytic domain of the Protein Serine/T | 99.93 | |
| KOG0658 | 364 | consensus Glycogen synthase kinase-3 [Carbohydrate | 99.93 | |
| KOG0199 | 1039 | consensus ACK and related non-receptor tyrosine ki | 99.93 | |
| cd07848 | 287 | STKc_CDKL5 Catalytic domain of the Serine/Threonin | 99.93 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 99.93 | |
| KOG0583 | 370 | consensus Serine/threonine protein kinase [Signal | 99.93 | |
| KOG0592 | 604 | consensus 3-phosphoinositide-dependent protein kin | 99.93 | |
| KOG0194 | 474 | consensus Protein tyrosine kinase [Signal transduc | 99.92 | |
| cd05102 | 338 | PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi | 99.92 | |
| cd06649 | 331 | PKc_MEK2 Catalytic domain of the dual-specificity | 99.92 | |
| cd07859 | 338 | STKc_TDY_MAPK_plant Catalytic domain of the Serine | 99.92 | |
| KOG0580 | 281 | consensus Serine/threonine protein kinase [Cell cy | 99.92 | |
| KOG0032 | 382 | consensus Ca2+/calmodulin-dependent protein kinase | 99.92 | |
| KOG0605 | 550 | consensus NDR and related serine/threonine kinases | 99.92 | |
| cd07871 | 288 | STKc_PCTAIRE3 Catalytic domain of the Serine/Threo | 99.92 | |
| cd05612 | 291 | STKc_PRKX_like Catalytic domain of PRKX-like Prote | 99.92 | |
| PLN00034 | 353 | mitogen-activated protein kinase kinase; Provision | 99.92 | |
| KOG2345 | 302 | consensus Serine/threonine protein kinase/TGF-beta | 99.92 | |
| PTZ00036 | 440 | glycogen synthase kinase; Provisional | 99.92 | |
| cd05096 | 304 | PTKc_DDR1 Catalytic domain of the Protein Tyrosine | 99.92 | |
| KOG0616 | 355 | consensus cAMP-dependent protein kinase catalytic | 99.92 | |
| PTZ00263 | 329 | protein kinase A catalytic subunit; Provisional | 99.92 | |
| KOG0589 | 426 | consensus Serine/threonine protein kinase [General | 99.92 | |
| cd07869 | 303 | STKc_PFTAIRE1 Catalytic domain of the Serine/Threo | 99.92 | |
| cd05585 | 312 | STKc_YPK1_like Catalytic domain of Yeast Protein K | 99.92 | |
| cd05571 | 323 | STKc_PKB Catalytic domain of the Protein Serine/Th | 99.91 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.91 | |
| KOG0594 | 323 | consensus Protein kinase PCTAIRE and related kinas | 99.91 | |
| cd07874 | 355 | STKc_JNK3 Catalytic domain of the Serine/Threonine | 99.91 | |
| cd07876 | 359 | STKc_JNK2 Catalytic domain of the Serine/Threonine | 99.91 | |
| cd05600 | 333 | STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- | 99.91 | |
| PHA03212 | 391 | serine/threonine kinase US3; Provisional | 99.91 | |
| cd07862 | 290 | STKc_CDK6 Catalytic domain of the Serine/Threonine | 99.91 | |
| cd05108 | 316 | PTKc_EGFR Catalytic domain of the Protein Tyrosine | 99.91 | |
| PTZ00283 | 496 | serine/threonine protein kinase; Provisional | 99.91 | |
| PTZ00267 | 478 | NIMA-related protein kinase; Provisional | 99.91 | |
| PF07714 | 259 | Pkinase_Tyr: Protein tyrosine kinase Protein kinas | 99.91 | |
| cd05048 | 283 | PTKc_Ror Catalytic Domain of the Protein Tyrosine | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| cd05104 | 375 | PTKc_Kit Catalytic domain of the Protein Tyrosine | 99.91 | |
| cd05589 | 324 | STKc_PKN Catalytic domain of the Protein Serine/Th | 99.91 | |
| cd06650 | 333 | PKc_MEK1 Catalytic domain of the dual-specificity | 99.91 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.91 | |
| cd05106 | 374 | PTKc_CSF-1R Catalytic domain of the Protein Tyrosi | 99.91 | |
| cd05595 | 323 | STKc_PKB_beta Catalytic domain of the Protein Seri | 99.91 | |
| cd05605 | 285 | STKc_GRK4_like Catalytic domain of G protein-coupl | 99.91 | |
| cd05626 | 381 | STKc_LATS2 Catalytic domain of the Protein Serine/ | 99.91 | |
| PTZ00426 | 340 | cAMP-dependent protein kinase catalytic subunit; P | 99.91 | |
| cd06646 | 267 | STKc_MAP4K5 Catalytic domain of the Protein Serine | 99.91 | |
| cd07853 | 372 | STKc_NLK Catalytic domain of the Serine/Threonine | 99.91 | |
| cd07878 | 343 | STKc_p38beta_MAPK11 Catalytic domain of the Serine | 99.91 | |
| cd06619 | 279 | PKc_MKK5 Catalytic domain of the dual-specificity | 99.91 | |
| KOG0585 | 576 | consensus Ca2+/calmodulin-dependent protein kinase | 99.9 | |
| cd05593 | 328 | STKc_PKB_gamma Catalytic domain of the Protein Ser | 99.9 | |
| cd05584 | 323 | STKc_p70S6K Catalytic domain of the Protein Serine | 99.9 | |
| cd07875 | 364 | STKc_JNK1 Catalytic domain of the Serine/Threonine | 99.9 | |
| KOG0599 | 411 | consensus Phosphorylase kinase gamma subunit [Carb | 99.9 | |
| cd05599 | 364 | STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel | 99.9 | |
| cd05049 | 280 | PTKc_Trk Catalytic domain of the Protein Tyrosine | 99.9 | |
| cd07863 | 288 | STKc_CDK4 Catalytic domain of the Serine/Threonine | 99.9 | |
| cd07872 | 309 | STKc_PCTAIRE2 Catalytic domain of the Serine/Threo | 99.9 | |
| cd05091 | 283 | PTKc_Ror2 Catalytic domain of the Protein Tyrosine | 99.9 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.9 | |
| cd05093 | 288 | PTKc_TrkB Catalytic domain of the Protein Tyrosine | 99.9 | |
| cd08228 | 267 | STKc_Nek6 Catalytic domain of the Protein Serine/T | 99.9 | |
| cd05111 | 279 | PTK_HER3 Pseudokinase domain of the Protein Tyrosi | 99.9 | |
| cd05114 | 256 | PTKc_Tec_Rlk Catalytic domain of the Protein Tyros | 99.9 | |
| cd06625 | 263 | STKc_MEKK3_like Catalytic domain of MAP/ERK kinase | 99.9 | |
| cd05064 | 266 | PTKc_EphR_A10 Catalytic domain of the Protein Tyro | 99.9 | |
| cd06654 | 296 | STKc_PAK1 Catalytic domain of the Protein Serine/T | 99.9 | |
| cd05592 | 316 | STKc_nPKC_theta_delta Catalytic domain of the Prot | 99.9 | |
| cd05632 | 285 | STKc_GRK5 Catalytic domain of the Protein Serine/T | 99.9 | |
| KOG0667 | 586 | consensus Dual-specificity tyrosine-phosphorylatio | 99.9 | |
| cd05607 | 277 | STKc_GRK7 Catalytic domain of the Protein Serine/T | 99.9 | |
| cd05072 | 261 | PTKc_Lyn Catalytic domain of the Protein Tyrosine | 99.9 | |
| cd05043 | 280 | PTK_Ryk Pseudokinase domain of Ryk (Receptor relat | 99.9 | |
| KOG0611 | 668 | consensus Predicted serine/threonine protein kinas | 99.9 | |
| cd05570 | 318 | STKc_PKC Catalytic domain of the Protein Serine/Th | 99.9 | |
| cd05105 | 400 | PTKc_PDGFR_alpha Catalytic domain of the Protein T | 99.9 | |
| cd05035 | 273 | PTKc_Axl_like Catalytic Domain of Axl-like Protein | 99.9 | |
| cd05619 | 316 | STKc_nPKC_theta Catalytic domain of the Protein Se | 99.9 | |
| cd06655 | 296 | STKc_PAK2 Catalytic domain of the Protein Serine/T | 99.9 | |
| cd05573 | 350 | STKc_ROCK_NDR_like Catalytic domain of ROCK- and N | 99.9 | |
| cd07873 | 301 | STKc_PCTAIRE1 Catalytic domain of the Serine/Threo | 99.9 | |
| cd05590 | 320 | STKc_nPKC_eta Catalytic domain of the Protein Seri | 99.9 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| cd05588 | 329 | STKc_aPKC Catalytic domain of the Protein Serine/T | 99.9 | |
| cd05608 | 280 | STKc_GRK1 Catalytic domain of the Protein Serine/T | 99.9 | |
| cd05596 | 370 | STKc_ROCK Catalytic domain of the Protein Serine/T | 99.9 | |
| cd05625 | 382 | STKc_LATS1 Catalytic domain of the Protein Serine/ | 99.9 | |
| cd05062 | 277 | PTKc_IGF-1R Catalytic domain of the Protein Tyrosi | 99.9 | |
| cd05051 | 296 | PTKc_DDR Catalytic domain of the Protein Tyrosine | 99.9 | |
| cd05618 | 329 | STKc_aPKC_iota Catalytic domain of the Protein Ser | 99.9 | |
| KOG1989 | 738 | consensus ARK protein kinase family [Signal transd | 99.9 | |
| cd05092 | 280 | PTKc_TrkA Catalytic domain of the Protein Tyrosine | 99.9 | |
| cd06624 | 268 | STKc_ASK Catalytic domain of the Protein Serine/Th | 99.89 | |
| cd05601 | 330 | STKc_CRIK Catalytic domain of the Protein Serine/T | 99.89 | |
| cd05616 | 323 | STKc_cPKC_beta Catalytic domain of the Protein Ser | 99.89 | |
| cd05582 | 318 | STKc_RSK_N N-terminal catalytic domain of the Prot | 99.89 | |
| cd05068 | 261 | PTKc_Frk_like Catalytic domain of Fyn-related kina | 99.89 | |
| cd05148 | 261 | PTKc_Srm_Brk Catalytic domain of the Protein Tyros | 99.89 | |
| cd05054 | 337 | PTKc_VEGFR Catalytic domain of the Protein Tyrosin | 99.89 | |
| cd05033 | 266 | PTKc_EphR Catalytic domain of Ephrin Receptor Prot | 99.89 | |
| cd06609 | 274 | STKc_MST3_like Catalytic domain of Mammalian Ste20 | 99.89 | |
| cd06645 | 267 | STKc_MAP4K3 Catalytic domain of the Protein Serine | 99.89 | |
| cd05094 | 291 | PTKc_TrkC Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd06643 | 282 | STKc_SLK Catalytic domain of the Protein Serine/Th | 99.89 | |
| cd05629 | 377 | STKc_NDR_like_fungal Catalytic domain of Fungal Nu | 99.89 | |
| cd08229 | 267 | STKc_Nek7 Catalytic domain of the Protein Serine/T | 99.89 | |
| cd05090 | 283 | PTKc_Ror1 Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd06656 | 297 | STKc_PAK3 Catalytic domain of the Protein Serine/T | 99.89 | |
| cd06637 | 272 | STKc_TNIK Catalytic domain of the Protein Serine/T | 99.89 | |
| PHA03207 | 392 | serine/threonine kinase US3; Provisional | 99.89 | |
| cd05591 | 321 | STKc_nPKC_epsilon Catalytic domain of the Protein | 99.89 | |
| cd05587 | 324 | STKc_cPKC Catalytic domain of the Protein Serine/T | 99.89 | |
| cd05116 | 257 | PTKc_Syk Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd05084 | 252 | PTKc_Fes Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd08219 | 255 | STKc_Nek3 Catalytic domain of the Protein Serine/T | 99.89 | |
| cd05630 | 285 | STKc_GRK6 Catalytic domain of the Protein Serine/T | 99.89 | |
| cd06631 | 265 | STKc_YSK4 Catalytic domain of the Protein Serine/T | 99.89 | |
| KOG1025 | 1177 | consensus Epidermal growth factor receptor EGFR an | 99.89 | |
| cd05036 | 277 | PTKc_ALK_LTK Catalytic domain of the Protein Tyros | 99.89 | |
| cd05575 | 323 | STKc_SGK Catalytic domain of the Protein Serine/Th | 99.89 | |
| cd06615 | 308 | PKc_MEK Catalytic domain of the dual-specificity P | 99.89 | |
| cd08529 | 256 | STKc_FA2-like Catalytic domain of the Protein Seri | 99.89 | |
| cd05070 | 260 | PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros | 99.89 | |
| cd05614 | 332 | STKc_MSK2_N N-terminal catalytic domain of the Pro | 99.89 | |
| cd05620 | 316 | STKc_nPKC_delta Catalytic domain of the Protein Se | 99.89 | |
| cd06640 | 277 | STKc_MST4 Catalytic domain of the Protein Serine/T | 99.89 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 99.89 | |
| cd06612 | 256 | STKc_MST1_2 Catalytic domain of the Protein Serine | 99.89 | |
| cd06613 | 262 | STKc_MAP4K3_like Catalytic domain of Mitogen-activ | 99.89 | |
| cd05598 | 376 | STKc_LATS Catalytic domain of the Protein Serine/T | 99.89 | |
| cd06642 | 277 | STKc_STK25-YSK1 Catalytic domain of the Protein Se | 99.89 | |
| cd05055 | 302 | PTKc_PDGFR Catalytic domain of the Protein Tyrosin | 99.89 | |
| KOG0983 | 391 | consensus Mitogen-activated protein kinase (MAPK) | 99.89 | |
| cd07868 | 317 | STKc_CDK8 Catalytic domain of the Serine/Threonine | 99.89 | |
| cd05628 | 363 | STKc_NDR1 Catalytic domain of the Protein Serine/T | 99.89 | |
| cd05617 | 327 | STKc_aPKC_zeta Catalytic domain of the Protein Ser | 99.89 | |
| cd05109 | 279 | PTKc_HER2 Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd06644 | 292 | STKc_STK10_LOK Catalytic domain of the Protein Ser | 99.89 | |
| cd05052 | 263 | PTKc_Abl Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd05067 | 260 | PTKc_Lck_Blk Catalytic domain of the Protein Tyros | 99.89 | |
| cd06651 | 266 | STKc_MEKK3 Catalytic domain of the Protein Serine/ | 99.89 | |
| cd05602 | 325 | STKc_SGK1 Catalytic domain of the Protein Serine/T | 99.89 | |
| cd06611 | 280 | STKc_SLK_like Catalytic domain of Ste20-like kinas | 99.89 | |
| cd05594 | 325 | STKc_PKB_alpha Catalytic domain of the Protein Ser | 99.89 | |
| cd05075 | 272 | PTKc_Axl Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd05097 | 295 | PTKc_DDR_like Catalytic domain of Discoidin Domain | 99.89 | |
| cd05059 | 256 | PTKc_Tec_like Catalytic domain of Tec-like Protein | 99.89 | |
| PHA03211 | 461 | serine/threonine kinase US3; Provisional | 99.89 | |
| cd05095 | 296 | PTKc_DDR2 Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd05113 | 256 | PTKc_Btk_Bmx Catalytic domain of the Protein Tyros | 99.89 | |
| cd05032 | 277 | PTKc_InsR_like Catalytic domain of Insulin Recepto | 99.89 | |
| PTZ00284 | 467 | protein kinase; Provisional | 99.89 | |
| cd05604 | 325 | STKc_SGK3 Catalytic domain of the Protein Serine/T | 99.89 | |
| cd06620 | 284 | PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr | 99.89 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.89 | |
| cd06607 | 307 | STKc_TAO Catalytic domain of the Protein Serine/Th | 99.89 | |
| cd07839 | 284 | STKc_CDK5 Catalytic domain of the Serine/Threonine | 99.89 | |
| cd05622 | 371 | STKc_ROCK1 Catalytic domain of the Protein Serine/ | 99.89 | |
| cd05603 | 321 | STKc_SGK2 Catalytic domain of the Protein Serine/T | 99.89 | |
| cd05080 | 283 | PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the | 99.89 | |
| cd05071 | 262 | PTKc_Src Catalytic domain of the Protein Tyrosine | 99.89 | |
| cd06628 | 267 | STKc_MAPKKK_Byr2_like Catalytic domain of fungal B | 99.88 | |
| cd06616 | 288 | PKc_MKK4 Catalytic domain of the dual-specificity | 99.88 | |
| cd05615 | 323 | STKc_cPKC_alpha Catalytic domain of the Protein Se | 99.88 | |
| cd05621 | 370 | STKc_ROCK2 Catalytic domain of the Protein Serine/ | 99.88 | |
| cd06647 | 293 | STKc_PAK_I Catalytic domain of the Protein Serine/ | 99.88 | |
| cd05085 | 250 | PTKc_Fer Catalytic domain of the Protein Tyrosine | 99.88 | |
| cd05050 | 288 | PTKc_Musk Catalytic domain of the Protein Tyrosine | 99.88 | |
| cd05110 | 303 | PTKc_HER4 Catalytic domain of the Protein Tyrosine | 99.88 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 99.88 | |
| cd07861 | 285 | STKc_CDK1_euk Catalytic domain of the Serine/Threo | 99.88 | |
| cd06610 | 267 | STKc_OSR1_SPAK Catalytic domain of the Protein Ser | 99.88 | |
| cd07860 | 284 | STKc_CDK2_3 Catalytic domain of the Serine/Threoni | 99.88 | |
| cd05627 | 360 | STKc_NDR2 Catalytic domain of the Protein Serine/T | 99.88 | |
| cd07849 | 336 | STKc_ERK1_2_like Catalytic domain of Extracellular | 99.88 | |
| cd05065 | 269 | PTKc_EphR_B Catalytic domain of the Protein Tyrosi | 99.88 | |
| cd05045 | 290 | PTKc_RET Catalytic domain of the Protein Tyrosine | 99.88 | |
| cd05081 | 284 | PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of | 99.88 | |
| cd06621 | 287 | PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek | 99.88 | |
| cd05107 | 401 | PTKc_PDGFR_beta Catalytic domain of the Protein Ty | 99.88 | |
| cd06636 | 282 | STKc_MAP4K4_6 Catalytic domain of the Protein Seri | 99.88 | |
| cd05063 | 268 | PTKc_EphR_A2 Catalytic domain of the Protein Tyros | 99.88 | |
| cd05115 | 257 | PTKc_Zap-70 Catalytic domain of the Protein Tyrosi | 99.88 | |
| cd07833 | 288 | STKc_CDKL Catalytic domain of Cyclin-Dependent pro | 99.88 | |
| cd08224 | 267 | STKc_Nek6_Nek7 Catalytic domain of the Protein Ser | 99.88 | |
| cd05087 | 269 | PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein | 99.88 | |
| cd06659 | 297 | STKc_PAK6 Catalytic domain of the Protein Serine/T | 99.88 | |
| cd05060 | 257 | PTKc_Syk_like Catalytic domain of Spleen Tyrosine | 99.88 | |
| PHA03209 | 357 | serine/threonine kinase US3; Provisional | 99.88 | |
| cd08220 | 256 | STKc_Nek8 Catalytic domain of the Protein Serine/T | 99.88 | |
| cd05077 | 262 | PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th | 99.88 | |
| cd05061 | 288 | PTKc_InsR Catalytic domain of the Protein Tyrosine | 99.88 | |
| cd07846 | 286 | STKc_CDKL2_3 Catalytic domain of the Serine/Threon | 99.88 | |
| cd05053 | 293 | PTKc_FGFR Catalytic domain of the Protein Tyrosine | 99.88 | |
| cd07867 | 317 | STKc_CDC2L6 Catalytic domain of Serine/Threonine K | 99.88 | |
| cd06638 | 286 | STKc_myosinIIIA Catalytic domain of the Protein Se | 99.88 | |
| cd07870 | 291 | STKc_PFTAIRE2 Catalytic domain of the Serine/Threo | 99.88 | |
| cd07847 | 286 | STKc_CDKL1_4 Catalytic domain of the Serine/Threon | 99.88 | |
| cd05041 | 251 | PTKc_Fes_like Catalytic domain of Fes-like Protein | 99.88 | |
| cd06630 | 268 | STKc_MEKK1 Catalytic domain of the Protein Serine/ | 99.88 | |
| KOG0584 | 632 | consensus Serine/threonine protein kinase [General | 99.88 | |
| cd05058 | 262 | PTKc_Met_Ron Catalytic domain of the Protein Tyros | 99.88 | |
| cd06622 | 286 | PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS | 99.88 | |
| cd06652 | 265 | STKc_MEKK2 Catalytic domain of the Protein Serine/ | 99.88 | |
| cd06617 | 283 | PKc_MKK3_6 Catalytic domain of the dual-specificit | 99.88 | |
| cd07879 | 342 | STKc_p38delta_MAPK13 Catalytic domain of the Serin | 99.88 | |
| cd05040 | 257 | PTKc_Ack_like Catalytic domain of the Protein Tyro | 99.88 | |
| cd08218 | 256 | STKc_Nek1 Catalytic domain of the Protein Serine/T | 99.88 | |
| cd07850 | 353 | STKc_JNK Catalytic domain of the Serine/Threonine | 99.88 | |
| cd06632 | 258 | STKc_MEKK1_plant Catalytic domain of the Protein S | 99.88 | |
| cd08221 | 256 | STKc_Nek9 Catalytic domain of the Protein Serine/T | 99.88 | |
| cd08223 | 257 | STKc_Nek4 Catalytic domain of the Protein Serine/T | 99.87 | |
| cd06639 | 291 | STKc_myosinIIIB Catalytic domain of the Protein Se | 99.87 | |
| cd05103 | 343 | PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi | 99.87 | |
| cd07845 | 309 | STKc_CDK10 Catalytic domain of the Serine/Threonin | 99.87 | |
| cd05056 | 270 | PTKc_FAK Catalytic domain of the Protein Tyrosine | 99.87 | |
| cd06658 | 292 | STKc_PAK5 Catalytic domain of the Protein Serine/T | 99.87 | |
| cd05069 | 260 | PTKc_Yes Catalytic domain of the Protein Tyrosine | 99.87 | |
| PHA02882 | 294 | putative serine/threonine kinase; Provisional | 99.87 | |
| cd05089 | 297 | PTKc_Tie1 Catalytic domain of the Protein Tyrosine | 99.87 | |
| cd06641 | 277 | STKc_MST3 Catalytic domain of the Protein Serine/T | 99.87 | |
| cd06648 | 285 | STKc_PAK_II Catalytic domain of the Protein Serine | 99.87 | |
| PF00069 | 260 | Pkinase: Protein kinase domain Protein kinase; unc | 99.87 | |
| cd07835 | 283 | STKc_CDK1_like Catalytic domain of Cyclin-Dependen | 99.87 | |
| KOG1024 | 563 | consensus Receptor-like protein tyrosine kinase RY | 99.87 | |
| cd05066 | 267 | PTKc_EphR_A Catalytic domain of the Protein Tyrosi | 99.87 | |
| cd06635 | 317 | STKc_TAO1 Catalytic domain of the Protein Serine/T | 99.87 | |
| cd06629 | 272 | STKc_MAPKKK_Bck1_like Catalytic domain of fungal B | 99.87 | |
| cd05112 | 256 | PTKc_Itk Catalytic domain of the Protein Tyrosine | 99.87 | |
| cd05034 | 261 | PTKc_Src_like Catalytic domain of Src kinase-like | 99.87 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.87 | |
| cd06626 | 264 | STKc_MEKK4 Catalytic domain of the Protein Serine/ | 99.87 | |
| cd05101 | 304 | PTKc_FGFR2 Catalytic domain of the Protein Tyrosin | 99.87 | |
| cd05098 | 307 | PTKc_FGFR1 Catalytic domain of the Protein Tyrosin | 99.87 | |
| cd06605 | 265 | PKc_MAPKK Catalytic domain of the dual-specificity | 99.87 | |
| KOG0662 | 292 | consensus Cyclin-dependent kinase CDK5 [Intracellu | 99.87 | |
| cd06917 | 277 | STKc_NAK1_like Catalytic domain of Fungal Nak1-lik | 99.87 | |
| cd05044 | 269 | PTKc_c-ros Catalytic domain of the Protein Tyrosin | 99.87 | |
| cd05039 | 256 | PTKc_Csk_like Catalytic domain of C-terminal Src k | 99.87 | |
| cd05088 | 303 | PTKc_Tie2 Catalytic domain of the Protein Tyrosine | 99.87 | |
| cd05074 | 273 | PTKc_Tyro3 Catalytic domain of the Protein Tyrosin | 99.87 | |
| KOG4645 | 1509 | consensus MAPKKK (MAP kinase kinase kinase) SSK2 a | 99.87 | |
| cd08227 | 327 | PK_STRAD_alpha Pseudokinase domain of STE20-relate | 99.87 | |
| cd05609 | 305 | STKc_MAST Catalytic domain of the Protein Serine/T | 99.87 | |
| cd07855 | 334 | STKc_ERK5 Catalytic domain of the Serine/Threonine | 99.87 | |
| cd07856 | 328 | STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre | 99.87 | |
| cd05076 | 274 | PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th | 99.87 | |
| KOG4236 | 888 | consensus Serine/threonine protein kinase PKC mu/P | 99.87 | |
| cd05057 | 279 | PTKc_EGFR_like Catalytic domain of Epidermal Growt | 99.87 | |
| cd08528 | 269 | STKc_Nek10 Catalytic domain of the Protein Serine/ | 99.87 | |
| cd07852 | 337 | STKc_MAPK15 Catalytic domain of the Serine/Threoni | 99.87 | |
| cd05578 | 258 | STKc_Yank1 Catalytic domain of the Protein Serine/ | 99.87 | |
| cd05099 | 314 | PTKc_FGFR4 Catalytic domain of the Protein Tyrosin | 99.87 | |
| cd05082 | 256 | PTKc_Csk Catalytic domain of the Protein Tyrosine | 99.87 | |
| cd07832 | 286 | STKc_CCRK Catalytic domain of the Serine/Threonine | 99.87 | |
| KOG0200 | 609 | consensus Fibroblast/platelet-derived growth facto | 99.87 | |
| cd05079 | 284 | PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the | 99.87 | |
| cd08225 | 257 | STKc_Nek5 Catalytic domain of the Protein Serine/T | 99.87 | |
| cd05038 | 284 | PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P | 99.87 | |
| cd06608 | 275 | STKc_myosinIII_like Catalytic domain of Class III | 99.87 | |
| cd05073 | 260 | PTKc_Hck Catalytic domain of the Protein Tyrosine | 99.87 | |
| cd07842 | 316 | STKc_CDK8_like Catalytic domain of Cyclin-Dependen | 99.87 | |
| cd07858 | 337 | STKc_TEY_MAPK_plant Catalytic domain of the Serine | 99.86 | |
| cd07844 | 291 | STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like | 99.86 | |
| cd05078 | 258 | PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain | 99.86 | |
| cd07877 | 345 | STKc_p38alpha_MAPK14 Catalytic domain of the Serin | 99.86 | |
| cd07865 | 310 | STKc_CDK9 Catalytic domain of the Serine/Threonine | 99.86 | |
| cd00192 | 262 | PTKc Catalytic domain of Protein Tyrosine Kinases. | 99.86 | |
| cd07831 | 282 | STKc_MOK Catalytic domain of the Serine/Threonine | 99.86 | |
| KOG0666 | 438 | consensus Cyclin C-dependent kinase CDK8 [Transcri | 99.86 | |
| PLN00009 | 294 | cyclin-dependent kinase A; Provisional | 99.86 | |
| cd06618 | 296 | PKc_MKK7 Catalytic domain of the dual-specificity | 99.86 | |
| cd07854 | 342 | STKc_MAPK4_6 Catalytic domain of the Serine/Threon | 99.86 | |
| cd05597 | 331 | STKc_DMPK_like Catalytic domain of Myotonic Dystro | 99.86 | |
| PHA03210 | 501 | serine/threonine kinase US3; Provisional | 99.86 | |
| cd05580 | 290 | STKc_PKA Catalytic domain of the Protein Serine/Th | 99.86 | |
| KOG2052 | 513 | consensus Activin A type IB receptor, serine/threo | 99.86 | |
| cd05100 | 334 | PTKc_FGFR3 Catalytic domain of the Protein Tyrosin | 99.86 | |
| cd06634 | 308 | STKc_TAO2 Catalytic domain of the Protein Serine/T | 99.86 | |
| cd08217 | 265 | STKc_Nek2 Catalytic domain of the Protein Serine/T | 99.86 | |
| KOG0586 | 596 | consensus Serine/threonine protein kinase [General | 99.86 | |
| cd07840 | 287 | STKc_CDK9_like Catalytic domain of Cyclin-Dependen | 99.86 | |
| cd05574 | 316 | STKc_phototropin_like Catalytic domain of Phototro | 99.86 | |
| KOG3653 | 534 | consensus Transforming growth factor beta/activin | 99.86 | |
| KOG0669 | 376 | consensus Cyclin T-dependent kinase CDK9 [Cell cyc | 99.86 | |
| cd07864 | 302 | STKc_CDK12 Catalytic domain of the Serine/Threonin | 99.86 | |
| KOG4250 | 732 | consensus TANK binding protein kinase TBK1 [Signal | 99.86 | |
| cd05083 | 254 | PTKc_Chk Catalytic domain of the Protein Tyrosine | 99.86 | |
| cd07836 | 284 | STKc_Pho85 Catalytic domain of the Serine/Threonin | 99.86 | |
| cd06657 | 292 | STKc_PAK4 Catalytic domain of the Protein Serine/T | 99.86 | |
| cd06614 | 286 | STKc_PAK Catalytic domain of the Protein Serine/Th | 99.86 | |
| cd06633 | 313 | STKc_TAO3 Catalytic domain of the Protein Serine/T | 99.86 | |
| smart00219 | 258 | TyrKc Tyrosine kinase, catalytic domain. Phosphotr | 99.86 | |
| cd05623 | 332 | STKc_MRCK_alpha Catalytic domain of the Protein Se | 99.86 | |
| cd05047 | 270 | PTKc_Tie Catalytic domain of Tie Protein Tyrosine | 99.86 | |
| cd06653 | 264 | STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina | 99.85 | |
| cd05042 | 269 | PTKc_Aatyk Catalytic domain of the Protein Tyrosin | 99.85 | |
| cd05577 | 277 | STKc_GRK Catalytic domain of the Protein Serine/Th | 99.85 | |
| cd07843 | 293 | STKc_CDC2L1 Catalytic domain of the Serine/Threoni | 99.85 | |
| cd07866 | 311 | STKc_BUR1 Catalytic domain of the Serine/Threonine | 99.85 | |
| cd06623 | 264 | PKc_MAPKK_plant_like Catalytic domain of Plant dua | 99.85 | |
| cd07838 | 287 | STKc_CDK4_6_like Catalytic domain of Cyclin-Depend | 99.85 | |
| cd05586 | 330 | STKc_Sck1_like Catalytic domain of Suppressor of l | 99.85 | |
| cd07841 | 298 | STKc_CDK7 Catalytic domain of the Serine/Threonine | 99.85 | |
| cd05624 | 331 | STKc_MRCK_beta Catalytic domain of the Protein Ser | 99.85 | |
| PTZ00024 | 335 | cyclin-dependent protein kinase; Provisional | 99.85 | |
| KOG0986 | 591 | consensus G protein-coupled receptor kinase [Signa | 99.85 | |
| cd05118 | 283 | STKc_CMGC Catalytic domain of CMGC family Serine/T | 99.85 | |
| KOG0607 | 463 | consensus MAP kinase-interacting kinase and relate | 99.85 | |
| cd07880 | 343 | STKc_p38gamma_MAPK12 Catalytic domain of the Serin | 99.85 | |
| KOG0690 | 516 | consensus Serine/threonine protein kinase [Signal | 99.85 | |
| cd05122 | 253 | PKc_STE Catalytic domain of STE family Protein Kin | 99.85 | |
| cd05086 | 268 | PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi | 99.85 | |
| cd06606 | 260 | STKc_MAPKKK Catalytic domain of the Protein Serine | 99.85 | |
| cd07851 | 343 | STKc_p38 Catalytic domain of the Serine/Threonine | 99.85 | |
| cd05046 | 275 | PTK_CCK4 Pseudokinase domain of the Protein Tyrosi | 99.85 | |
| cd07837 | 295 | STKc_CdkB_plant Catalytic domain of the Serine/Thr | 99.85 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.85 | |
| cd07834 | 330 | STKc_MAPK Catalytic domain of the Serine/Threonine | 99.85 | |
| KOG1006 | 361 | consensus Mitogen-activated protein kinase (MAPK) | 99.85 | |
| cd05572 | 262 | STKc_cGK_PKG Catalytic domain of the Protein Serin | 99.84 | |
| cd05611 | 260 | STKc_Rim15_like Catalytic domain of fungal Rim15-l | 99.84 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 99.84 | |
| KOG0610 | 459 | consensus Putative serine/threonine protein kinase | 99.84 | |
| KOG1151 | 775 | consensus Tousled-like protein kinase [Signal tran | 99.84 | |
| cd08530 | 256 | STKc_CNK2-like Catalytic domain of the Protein Ser | 99.84 | |
| cd06627 | 254 | STKc_Cdc7_like Catalytic domain of Cell division c | 99.84 | |
| cd07830 | 283 | STKc_MAK_like Catalytic domain of Male germ cell-A | 99.84 | |
| cd08226 | 328 | PK_STRAD_beta Pseudokinase domain of STE20-related | 99.84 | |
| cd08215 | 258 | STKc_Nek Catalytic domain of the Protein Serine/Th | 99.84 | |
| KOG0604 | 400 | consensus MAP kinase-activated protein kinase 2 [S | 99.84 | |
| cd07857 | 332 | STKc_MPK1 Catalytic domain of the Serine/Threonine | 99.84 | |
| cd08222 | 260 | STKc_Nek11 Catalytic domain of the Protein Serine/ | 99.83 | |
| PHA03390 | 267 | pk1 serine/threonine-protein kinase 1; Provisional | 99.83 | |
| cd05579 | 265 | STKc_MAST_like Catalytic domain of Microtubule-ass | 99.83 | |
| cd05581 | 280 | STKc_PDK1 Catalytic domain of the Protein Serine/T | 99.83 | |
| cd08216 | 314 | PK_STRAD Pseudokinase domain of STE20-related kina | 99.83 | |
| cd05037 | 259 | PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the | 99.83 | |
| cd05633 | 279 | STKc_GRK3 Catalytic domain of the Protein Serine/T | 99.82 | |
| KOG0587 | 953 | consensus Traf2- and Nck-interacting kinase and re | 99.82 | |
| cd05583 | 288 | STKc_MSK_N N-terminal catalytic domain of the Prot | 99.82 | |
| cd05613 | 290 | STKc_MSK1_N N-terminal catalytic domain of the Pro | 99.82 | |
| cd07829 | 282 | STKc_CDK_like Catalytic domain of Cyclin-Dependent | 99.82 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.82 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 99.82 | |
| cd05606 | 278 | STKc_beta_ARK Catalytic domain of the Protein Seri | 99.81 | |
| KOG0671 | 415 | consensus LAMMER dual specificity kinases [Signal | 99.81 | |
| cd05123 | 250 | STKc_AGC Catalytic domain of AGC family Protein Se | 99.8 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.8 | |
| KOG0668 | 338 | consensus Casein kinase II, alpha subunit [Signal | 99.79 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 99.78 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 99.77 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.77 | |
| KOG0664 | 449 | consensus Nemo-like MAPK-related serine/threonine | 99.77 | |
| cd05576 | 237 | STKc_RPK118_like Catalytic domain of the Protein S | 99.77 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 99.76 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.76 | |
| KOG0695 | 593 | consensus Serine/threonine protein kinase [Signal | 99.76 | |
| smart00220 | 244 | S_TKc Serine/Threonine protein kinases, catalytic | 99.75 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.73 | |
| PLN03225 | 566 | Serine/threonine-protein kinase SNT7; Provisional | 99.72 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.72 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.72 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 99.72 | |
| KOG0984 | 282 | consensus Mitogen-activated protein kinase (MAPK) | 99.7 | |
| PLN03224 | 507 | probable serine/threonine protein kinase; Provisio | 99.69 | |
| KOG0665 | 369 | consensus Jun-N-terminal kinase (JNK) [Signal tran | 99.68 | |
| smart00750 | 176 | KIND kinase non-catalytic C-lobe domain. It is an | 99.66 | |
| KOG0670 | 752 | consensus U4/U6-associated splicing factor PRP4 [R | 99.65 | |
| KOG1290 | 590 | consensus Serine/threonine protein kinase [Signal | 99.65 | |
| KOG1167 | 418 | consensus Serine/threonine protein kinase of the C | 99.64 | |
| KOG1152 | 772 | consensus Signal transduction serine/threonine kin | 99.61 | |
| KOG0608 | 1034 | consensus Warts/lats-like serine threonine kinases | 99.59 | |
| smart00221 | 225 | STYKc Protein kinase; unclassified specificity. Ph | 99.58 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.53 | |
| cd00180 | 215 | PKc Catalytic domain of Protein Kinases. Protein K | 99.52 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.44 | |
| KOG1345 | 378 | consensus Serine/threonine kinase [Signal transduc | 99.38 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.38 | |
| KOG1033 | 516 | consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati | 99.33 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.32 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.32 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.3 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.21 | |
| KOG0590 | 601 | consensus Checkpoint kinase and related serine/thr | 99.2 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.18 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 99.15 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.15 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.12 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.09 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 99.08 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.08 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.07 | |
| KOG0606 | 1205 | consensus Microtubule-associated serine/threonine | 99.07 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.06 | |
| COG0515 | 384 | SPS1 Serine/threonine protein kinase [General func | 99.03 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 99.03 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 99.02 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 98.98 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.93 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.93 | |
| KOG1023 | 484 | consensus Natriuretic peptide receptor, guanylate | 98.92 | |
| KOG1164 | 322 | consensus Casein kinase (serine/threonine/tyrosine | 98.9 | |
| PF14531 | 288 | Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_ | 98.89 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.88 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.84 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.81 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.77 | |
| KOG1163 | 341 | consensus Casein kinase (serine/threonine/tyrosine | 98.76 | |
| KOG1165 | 449 | consensus Casein kinase (serine/threonine/tyrosine | 98.71 | |
| KOG0590 | 601 | consensus Checkpoint kinase and related serine/thr | 98.64 | |
| KOG4158 | 598 | consensus BRPK/PTEN-induced protein kinase [Signal | 98.63 | |
| PRK10359 | 232 | lipopolysaccharide core biosynthesis protein; Prov | 98.54 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.53 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.48 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.29 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.21 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.06 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.98 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.96 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.93 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.93 | |
| PRK10345 | 210 | hypothetical protein; Provisional | 97.88 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.86 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.85 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.8 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.79 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.75 | |
| PRK12274 | 218 | serine/threonine protein kinase; Provisional | 97.69 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.66 | |
| KOG1166 | 974 | consensus Mitotic checkpoint serine/threonine prot | 97.64 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.56 | |
| KOG0601 | 524 | consensus Cyclin-dependent kinase WEE1 [Cell cycle | 97.34 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.32 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.31 | |
| cd05147 | 190 | RIO1_euk RIO kinase family; eukaryotic RIO1, catal | 97.31 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.11 | |
| KOG0606 | 1205 | consensus Microtubule-associated serine/threonine | 97.11 | |
| cd05145 | 190 | RIO1_like RIO kinase family; RIO1, RIO3 and simila | 97.1 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.08 | |
| cd05144 | 198 | RIO2_C RIO kinase family; RIO2, C-terminal catalyt | 97.0 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 96.85 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.85 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.8 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.73 | |
| smart00090 | 237 | RIO RIO-like kinase. | 96.59 | |
| PRK14879 | 211 | serine/threonine protein kinase; Provisional | 96.43 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.41 | |
| TIGR03724 | 199 | arch_bud32 Kae1-associated kinase Bud32. Members o | 95.98 | |
| cd05119 | 187 | RIO RIO kinase family, catalytic domain. The RIO k | 95.83 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 95.79 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-72 Score=648.30 Aligned_cols=619 Identities=29% Similarity=0.460 Sum_probs=440.1
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccC-----------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSF 69 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 69 (628)
|+|++|.+.+.+|..|.++++|+.|++++|+ +++|++|++++|.+++..|..|.++++|+.|++++|++
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 5677777777777777777777777777764 34677777777777777777777777777777777777
Q ss_pred cccCccccCCCCCCCEEEccCccccCCCCCC-------------------cccccccCCCCCcEEEcccCCCCCCCchHH
Q 037488 70 YGFIPNTFGNLRNLNRLGLNDNYLTSSTPKL-------------------NFLSSLSNCKYLKYFSFSNNSLDGILPRAI 130 (628)
Q Consensus 70 ~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~-------------------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 130 (628)
.+..|..|.++++|+.|++++|.++...+.. ..+..+.++++|+.|++++|.+.+..|..+
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 7767777777777777777777665432210 001123445555555555555555555555
Q ss_pred hccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCC
Q 037488 131 GNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210 (628)
Q Consensus 131 ~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 210 (628)
+.+. .|+.+++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+..|..+..+++|+
T Consensus 353 ~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 431 (968)
T PLN00113 353 GKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY 431 (968)
T ss_pred hCCC-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCC
Confidence 5543 455566666666555565565566666666666666666666666677777777777777777777777777777
Q ss_pred EEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcC
Q 037488 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNF 290 (628)
Q Consensus 211 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (628)
.|++++|.+++..|..+..+++|+.|++++|++.+..+.....++|+.|++++|.+++..|..+..+++|+.|+|++|++
T Consensus 432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 511 (968)
T PLN00113 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511 (968)
T ss_pred EEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcc
Confidence 77777777777777767777777778887777765333334567899999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCCC
Q 037488 291 SGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREG 370 (628)
Q Consensus 291 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~~ 370 (628)
.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+.+|+.+++++|++.+.+|..+
T Consensus 512 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~ 591 (968)
T PLN00113 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTG 591 (968)
T ss_pred eeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccccccccCCCcccCCC-CCCCCCcccccccccc--------------------------cc----Ccc---c-ccc
Q 037488 371 SFRNFLAESFKGNELLCGMP-NLQVPPCRTRIHHTSR--------------------------KN----GLL---I-GIR 415 (628)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------------------~~----~~~---~-~~~ 415 (628)
.+..+....+.||+.+|+.+ ....++|......... ++ ... . .+.
T Consensus 592 ~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (968)
T PLN00113 592 AFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGTWE 671 (968)
T ss_pred hhcccChhhhcCCccccCCccccCCCCCccccccceeeeehhHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccc
Confidence 88888888899999999853 3344566432110000 00 000 0 000
Q ss_pred -------chhhHHHHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcce
Q 037488 416 -------RLTYLELFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIK 487 (628)
Q Consensus 416 -------~~~~~~l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 487 (628)
.............|...+.||+|+||.||+|+. .+|+.||||+++..... ..+|++++++++|||||+
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~----~~~~~~~l~~l~HpnIv~ 747 (968)
T PLN00113 672 LQFFDSKVSKSITINDILSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSI----PSSEIADMGKLQHPNIVK 747 (968)
T ss_pred ccccccccchhhhHHHHHhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccc----cHHHHHHHhhCCCCCcce
Confidence 000011122234577778999999999999987 67999999998643221 235688999999999999
Q ss_pred eeeeccCCCccc-----------------------------------------ccccccc-------ccccCc-------
Q 037488 488 IISSCSNDDFKA-----------------------------------------DFGMAKP-------LLKEDQ------- 512 (628)
Q Consensus 488 l~~~~~~~~~~~-----------------------------------------DFGla~~-------~~~~~~------- 512 (628)
++|+|.+++... +-|+.+. +.....
T Consensus 748 ~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~~~ 827 (968)
T PLN00113 748 LIGLCRSEKGAYLIHEYIEGKNLSEVLRNLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLRLS 827 (968)
T ss_pred EEEEEEcCCCCEEEEeCCCCCcHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEEec
Confidence 999987654220 0011110 000000
Q ss_pred ----ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC-ccceeecc
Q 037488 513 ----SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI-SVMKVVDA 587 (628)
Q Consensus 513 ----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 587 (628)
........||++|||||++.+..|+.|+|||||||++|||+||+.||+...........|++..... .....+++
T Consensus 828 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (968)
T PLN00113 828 LPGLLCTDTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDP 907 (968)
T ss_pred cccccccCCCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCc
Confidence 0011233578999999999999999999999999999999999999976555556677777654433 23334444
Q ss_pred cccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+.... ..+.+...++.+++.+||+.||++||||+||
T Consensus 908 ~~~~~~----~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~ev 944 (968)
T PLN00113 908 SIRGDV----SVNQNEIVEVMNLALHCTATDPTARPCANDV 944 (968)
T ss_pred cccCCC----CccHHHHHHHHHHHHhhCcCCchhCcCHHHH
Confidence 432221 1223456678999999999999999999874
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=403.48 Aligned_cols=361 Identities=36% Similarity=0.499 Sum_probs=220.7
Q ss_pred cccCCCcccCCChhcc-CCCCCCEEecCccC---------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccc
Q 037488 2 AFSFNKLVGVVPTTIF-NVSTLNSLYLQNVQ---------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYG 71 (628)
Q Consensus 2 ~ls~N~l~~~~p~~~~-~l~~L~~L~l~~n~---------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 71 (628)
+|++|++++.+|..+. ++++|++|++++|. +++|++|+|++|.+++..|..+.++++|+.|+|++|.+.+
T Consensus 99 ~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~ 178 (968)
T PLN00113 99 NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178 (968)
T ss_pred ECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc
Confidence 4455555544444333 55555555555543 2345555555555555555555566666666666666655
Q ss_pred cCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccC
Q 037488 72 FIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGI 151 (628)
Q Consensus 72 ~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~ 151 (628)
..|..|+++++|+.|+|++|.++...+ ..+.++++|++|++++|.+.+..|..++.++ .|+.|++++|.+.+.+
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIP-----RELGQMKSLKWIYLGYNNLSGEIPYEIGGLT-SLNHLDLVYNNLTGPI 252 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCC-----hHHcCcCCccEEECcCCccCCcCChhHhcCC-CCCEEECcCceecccc
Confidence 555566666666666666665544322 2355566666666666666655666665554 4666666666666666
Q ss_pred CccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCC
Q 037488 152 PEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLT 231 (628)
Q Consensus 152 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 231 (628)
|..++++++|+.|++++|++.+.+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..++
T Consensus 253 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 332 (968)
T PLN00113 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332 (968)
T ss_pred ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCC
Confidence 66666666666666666666655666666666666666666666655666666666666666666666655666666666
Q ss_pred CCcEEEccCCcCC-cCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCC
Q 037488 232 NLRSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLE 310 (628)
Q Consensus 232 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 310 (628)
+|+.|++++|.+. .+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..++.+++|+.|+++
T Consensus 333 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~ 412 (968)
T PLN00113 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412 (968)
T ss_pred CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence 6666666666665 355555566666666666666666566666666666666666666666666666666677777777
Q ss_pred CCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCC
Q 037488 311 YNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPR 368 (628)
Q Consensus 311 ~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~ 368 (628)
+|++++.+|..+..+++|+.|++++|.+++.++..+..+++|+.|++++|++.+.+|.
T Consensus 413 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred CCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc
Confidence 7777666666666777777777777777666666666666666666666666665554
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=338.42 Aligned_cols=356 Identities=26% Similarity=0.271 Sum_probs=326.2
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccCC----------CCCCEEEccCCcceecCCccccCCCCCCEEeccCCccc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQL----------QNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFY 70 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l----------~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 70 (628)
||||+|+|+.+-+..|.++++|+.+++..|.| .+|+.|+|.+|.|+.+..+.+..++.|++|||+.|.|+
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is 162 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS 162 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh
Confidence 68999999999999999999999999999974 36999999999999998899999999999999999999
Q ss_pred ccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCccccc
Q 037488 71 GFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGG 150 (628)
Q Consensus 71 ~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~ 150 (628)
.+...+|..-.++++|+|++|.|+.+.. ..|.++.+|.+|.|+.|+++.+.+..|..++ .|+.|+|..|.|.-.
T Consensus 163 ~i~~~sfp~~~ni~~L~La~N~It~l~~-----~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~-~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 163 EIPKPSFPAKVNIKKLNLASNRITTLET-----GHFDSLNSLLTLKLSRNRITTLPQRSFKRLP-KLESLDLNRNRIRIV 236 (873)
T ss_pred cccCCCCCCCCCceEEeecccccccccc-----ccccccchheeeecccCcccccCHHHhhhcc-hhhhhhccccceeee
Confidence 9999999999999999999999998754 4688899999999999999998888998897 699999999999755
Q ss_pred CCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCC
Q 037488 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNL 230 (628)
Q Consensus 151 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 230 (628)
---.|.+|.+|+.|.|..|.+...-...|..+.++++|+|+.|++...-..++.++++|+.|+|+.|.|..+.+++++..
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 45689999999999999999998888899999999999999999998878889999999999999999999999999999
Q ss_pred CCCcEEEccCCcCCcCCC-CccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCcc---ccCCCCCCCE
Q 037488 231 TNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPI---TIGYLKDLQY 306 (628)
Q Consensus 231 ~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~ 306 (628)
++|+.|+|++|+|+++++ ++..+..|+.|+|++|.++......|..+.+|++|||++|.+++.+.+ .|.+++.|+.
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 999999999999999975 566799999999999999988888899999999999999999876654 4678999999
Q ss_pred EeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcce
Q 037488 307 LFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLE 363 (628)
Q Consensus 307 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~ 363 (628)
|.+.+|++......+|.++.+|+.|||.+|.|..+.|..|..+ .|++|.+..-.+-
T Consensus 397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFL 452 (873)
T ss_pred eeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceE
Confidence 9999999997777899999999999999999999999999998 8998877554443
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=323.41 Aligned_cols=345 Identities=23% Similarity=0.259 Sum_probs=169.4
Q ss_pred EEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEE
Q 037488 37 ELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFS 116 (628)
Q Consensus 37 ~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~ 116 (628)
.||+++|+++.+.+..|.++++|+.+++.+|.++.| |..-+...+|+.|+|.+|.|+++.. +.++.++.|+.||
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~I-P~f~~~sghl~~L~L~~N~I~sv~s-----e~L~~l~alrslD 155 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRI-PRFGHESGHLEKLDLRHNLISSVTS-----EELSALPALRSLD 155 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhhc-ccccccccceeEEeeeccccccccH-----HHHHhHhhhhhhh
Confidence 455555555555555555555555555555555432 3322333335555555555554432 2344445555555
Q ss_pred cccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCccc
Q 037488 117 FSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLE 196 (628)
Q Consensus 117 l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 196 (628)
||.|.|+.+....|..-. .++.|+|++|.|+..-...|.++.+|..|.|+.|+++...+.+|.+|++|+.|+|..|+|.
T Consensus 156 LSrN~is~i~~~sfp~~~-ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKV-NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhchhhcccCCCCCCCC-CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 555555544333333322 3445555555555444444555555555555555555444444444555555555555544
Q ss_pred ccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCC-CCccCCCCCcEEEcCCCC----------
Q 037488 197 GSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP-STLLNLKDILYLNLSSNF---------- 265 (628)
Q Consensus 197 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~---------- 265 (628)
..---.|.++++|+.|.|..|.|...-.+.|-.|.++++|+|+.|+++.+. .+++++++|+.|+||+|.
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 222334444555555555555554444444444455555555555544442 234444444445555554
Q ss_pred --------------CcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCCh---hhcCCCCC
Q 037488 266 --------------FTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPD---SIGDLINL 328 (628)
Q Consensus 266 --------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~L 328 (628)
++...+..|..+..|++|.|+.|.++..-...|.++++|+.|||++|.++..+.+ .|.+|++|
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L 394 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL 394 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence 4444444444444444444444444444444455555555555555555543322 35556666
Q ss_pred CEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCCCcccccccccccCCCcccC
Q 037488 329 KSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCG 388 (628)
Q Consensus 329 ~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~ 388 (628)
+.|++.+|+|..+....|.++..|+.|||.+|.+...=|....-..+....+...+.+|.
T Consensus 395 rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 395 RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCD 454 (873)
T ss_pred hheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEe
Confidence 666666666665555566666666666666666654333322222333344444445553
|
|
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=280.94 Aligned_cols=209 Identities=35% Similarity=0.609 Sum_probs=170.0
Q ss_pred cccchhhHHHHHhhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeec
Q 037488 413 GIRRLTYLELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSC 492 (628)
Q Consensus 413 ~~~~~~~~~l~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~ 492 (628)
..+.|++.++..+|++|+..+.||+|+||.||+|...+|+.||||+++.......++|..|++++.+++|||+|+|+|||
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC 140 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC 140 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence 56789999999999999999999999999999999998899999988764432145599999999999999999999999
Q ss_pred cCCCc-c-----------------------------------------------------------------------cc
Q 037488 493 SNDDF-K-----------------------------------------------------------------------AD 500 (628)
Q Consensus 493 ~~~~~-~-----------------------------------------------------------------------~D 500 (628)
.+++. . +|
T Consensus 141 ~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsD 220 (361)
T KOG1187|consen 141 LEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSD 220 (361)
T ss_pred ecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccC
Confidence 86552 1 39
Q ss_pred ccccccccccCcccccccc-cccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCccc-CCCccHHHHHHhhcC
Q 037488 501 FGMAKPLLKEDQSLIQTQT-LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIF-SGEMTLKHWVNDLLP 578 (628)
Q Consensus 501 FGla~~~~~~~~~~~~~~~-~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~-~~~~~~~~~~~~~~~ 578 (628)
||+|+..... .... .+. .||.+|+|||++..+..+.|+|||||||+|+|++||+.|.+... .+...+..|++....
T Consensus 221 FGLa~~~~~~-~~~~-~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~ 298 (361)
T KOG1187|consen 221 FGLAKLGPEG-DTSV-STTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLE 298 (361)
T ss_pred ccCcccCCcc-ccce-eeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHH
Confidence 9999754331 1111 122 79999999999999999999999999999999999999987654 344558888876665
Q ss_pred C-ccceeecccccC-CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 579 I-SVMKVVDAHLLS-QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 579 ~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ...+++|+.+.. .... ..+...+..++.+|++.+|++||+|.||
T Consensus 299 ~~~~~eiiD~~l~~~~~~~-----~~~~~~~~~~a~~C~~~~~~~RP~m~~V 345 (361)
T KOG1187|consen 299 EGKLREIVDPRLKEGEYPD-----EKEVKKLAELALRCLRPDPKERPTMSQV 345 (361)
T ss_pred CcchhheeCCCccCCCCCh-----HHHHHHHHHHHHHHcCcCCCcCcCHHHH
Confidence 5 677888988752 2211 0456679999999999999999999874
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-34 Score=285.92 Aligned_cols=348 Identities=27% Similarity=0.360 Sum_probs=287.7
Q ss_pred CcccCCCcc-cCCChhccCCCCCCEEecCccC----------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcc
Q 037488 1 MAFSFNKLV-GVVPTTIFNVSTLNSLYLQNVQ----------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSF 69 (628)
Q Consensus 1 l~ls~N~l~-~~~p~~~~~l~~L~~L~l~~n~----------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 69 (628)
+|+|.|.++ +-.|.....++.++-|.|...+ +++|+.|.+++|++. .+-+.+..++.|+.+++..|++
T Consensus 12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~L 90 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNL 90 (1255)
T ss_pred ccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhcccc
Confidence 489999999 5689999999999999998865 568999999999997 4667788999999999999988
Q ss_pred c--ccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcc
Q 037488 70 Y--GFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNI 147 (628)
Q Consensus 70 ~--~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~ 147 (628)
. || |..+-.|..|+.|+|++|+++..|.+ +...+++-+|+||+|+|..+....|.++. .|-.|++++|.+
T Consensus 91 KnsGi-P~diF~l~dLt~lDLShNqL~EvP~~------LE~AKn~iVLNLS~N~IetIPn~lfinLt-DLLfLDLS~NrL 162 (1255)
T KOG0444|consen 91 KNSGI-PTDIFRLKDLTILDLSHNQLREVPTN------LEYAKNSIVLNLSYNNIETIPNSLFINLT-DLLFLDLSNNRL 162 (1255)
T ss_pred ccCCC-Cchhcccccceeeecchhhhhhcchh------hhhhcCcEEEEcccCccccCCchHHHhhH-hHhhhccccchh
Confidence 4 55 55566799999999999999988754 56778999999999999987777777776 577899999998
Q ss_pred cccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcc-cccCCccccCCCCCCEEEccCCcCcccCCCC
Q 037488 148 SGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQL-EGSIPDDLCRLAALFQLDLGSNKLSGFVPAS 226 (628)
Q Consensus 148 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 226 (628)
. .+|+.+..|.+|++|.|++|.+....-..+..|++|++|.+++.+- ..-+|.++..+.+|..+|++.|.+. ..|+.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 7 4677888999999999999988633223345667788888887543 2346778888888899999998887 67888
Q ss_pred ccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCC-CCccccCCCCCCC
Q 037488 227 FGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSG-VIPITIGYLKDLQ 305 (628)
Q Consensus 227 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~ 305 (628)
+-++++|+.|+||+|+|+++........+|+.|++|.|+++ .+|+.+..++.|+.|.+.+|+++- -+|..++.+.+|+
T Consensus 241 ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 88889999999999999888777777788889999999988 678888888889888888887652 3677788888899
Q ss_pred EEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcc
Q 037488 306 YLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKL 362 (628)
Q Consensus 306 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l 362 (628)
.+..++|.+. ..|+.+..+..|+.|.|++|++. .+|..+.-++.|+.||+..|+=
T Consensus 320 vf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 320 VFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred HHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 8888888886 78888888889999999999886 5677888888899999988853
|
|
| >KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-32 Score=275.07 Aligned_cols=179 Identities=21% Similarity=0.319 Sum_probs=146.1
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
..|...+.||+|||+.||+++. .+|+.||+|++... .....+...+||++.+.++|||||+++++|++.+..
T Consensus 18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL 97 (592)
T KOG0575|consen 18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL 97 (592)
T ss_pred ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence 5688889999999999999998 88999999999753 345567789999999999999999999999876543
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|..+..+++ ..
T Consensus 98 ELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~E--rk 175 (592)
T KOG0575|consen 98 ELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGE--RK 175 (592)
T ss_pred EecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEecccceeeeecCccc--cc
Confidence 49999998865543 34
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
.+.|||+.|+|||++....++..+||||+|||||-|++|+|||+.. .+... .+.+.. ..
T Consensus 176 ~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk-----~vket------------y~~Ik~----~~ 234 (592)
T KOG0575|consen 176 KTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETK-----TVKET------------YNKIKL----NE 234 (592)
T ss_pred ceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccc-----hHHHH------------HHHHHh----cC
Confidence 6789999999999999989999999999999999999999999752 11111 111111 12
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..|...+.++++||.++|+.||.+|||+++|
T Consensus 235 Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~v 266 (592)
T KOG0575|consen 235 YSMPSHLSAEAKDLIRKLLRPNPSERPSLDEV 266 (592)
T ss_pred cccccccCHHHHHHHHHHhcCCcccCCCHHHH
Confidence 34455667889999999999999999998875
|
|
| >KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-32 Score=250.96 Aligned_cols=199 Identities=22% Similarity=0.228 Sum_probs=141.6
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
+.|+....+|||+||+||+++. .+|+.||||++... +....+.+.||+++|++++|||+|.++++|......
T Consensus 2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE 81 (396)
T KOG0593|consen 2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFE 81 (396)
T ss_pred cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEee
Confidence 4688889999999999999997 67999999999643 234456789999999999999999998877543211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
||||+||.+...+ ...+
T Consensus 82 ~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pg--d~YT 159 (396)
T KOG0593|consen 82 YCDHTVLHELERYPNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTLSAPG--DNYT 159 (396)
T ss_pred ecchHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchhhHhhcCCc--chhh
Confidence 6999999886433 3457
Q ss_pred cccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccH-HHHH-HhhcCCc---------cceee
Q 037488 518 QTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTL-KHWV-NDLLPIS---------VMKVV 585 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~-~~~~-~~~~~~~---------~~~~~ 585 (628)
..+.|.||+|||.+.| .+|+..+||||.||++.||++|++-|.+..+-++.. .... ....|.. +..+.
T Consensus 160 DYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~ 239 (396)
T KOG0593|consen 160 DYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVR 239 (396)
T ss_pred hhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeee
Confidence 7899999999999988 679999999999999999999999887643322111 1111 1111110 01111
Q ss_pred cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
-|......+-+ ..-+..+..+.+++..|+..||++|++.+|+
T Consensus 240 lP~~~~~epLe-~k~p~~s~~~ld~~k~cL~~dP~~R~sc~ql 281 (396)
T KOG0593|consen 240 LPEPEHPEPLE-RKYPKISNVLLDLLKKCLKMDPDDRLSCEQL 281 (396)
T ss_pred cCCCCCccchh-hhcccchHHHHHHHHHHhcCCccccccHHHH
Confidence 11110000000 1112456679999999999999999997653
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-35 Score=280.33 Aligned_cols=148 Identities=31% Similarity=0.500 Sum_probs=89.2
Q ss_pred EEEccCCcCCcCCCCccCCCCCcE-EEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCc
Q 037488 235 SLHLGSNQITSIPSTLLNLKDILY-LNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNR 313 (628)
Q Consensus 235 ~L~L~~n~l~~lp~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 313 (628)
.++++.|++.++|..+..++.++. +.+++|.+ +.+|..+..+++|..|+|++|.+. .+|..++.+..||.|+++.|+
T Consensus 392 ~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 392 SVNFSKNQLCELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNR 469 (565)
T ss_pred EEecccchHhhhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccc
Confidence 334444444444443333333322 22222322 355566677777888888877665 567777777778888888887
Q ss_pred CcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCCCcccccccccccCCCc
Q 037488 314 LQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNEL 385 (628)
Q Consensus 314 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~ 385 (628)
|. .+|..+..+..++.+-.++|++..+.+..+.++.+|..||+.+|.+...+|..+...++......||+.
T Consensus 470 Fr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 470 FR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred cc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 75 566666555555555556666666666666666677777777776665555555566666666666654
|
|
| >KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=255.51 Aligned_cols=183 Identities=20% Similarity=0.244 Sum_probs=145.2
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-c-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF-K----- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-~----- 498 (628)
.+.+..+.||+|..|+||++++ .+++.+|+|++... +....+++.+|++++++++||+||+++|.|..+.. .
T Consensus 79 ~dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mE 158 (364)
T KOG0581|consen 79 SDLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICME 158 (364)
T ss_pred HHhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehh
Confidence 3445568899999999999987 68999999999543 34557889999999999999999999998876542 1
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
||||+++.+... ..
T Consensus 159 YMDgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS----~a 234 (364)
T KOG0581|consen 159 YMDGGSLDDILKRVGRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS----IA 234 (364)
T ss_pred hcCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccccHHhhhh----hc
Confidence 599999987544 44
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
.+++||..|||||.+.+..|+.++||||||++++|+++|+.||....+....... .++.+..+ ..
T Consensus 235 ~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~------------Ll~~Iv~~---pp 299 (364)
T KOG0581|consen 235 NTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFE------------LLCAIVDE---PP 299 (364)
T ss_pred ccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHH------------HHHHHhcC---CC
Confidence 7889999999999999999999999999999999999999999754222222222 22222221 12
Q ss_pred hhchhh-hHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQ-CVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~-~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..|.. +++++.+++.+||++||.+|||+.|+
T Consensus 300 P~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qL 332 (364)
T KOG0581|consen 300 PRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQL 332 (364)
T ss_pred CCCCcccCCHHHHHHHHHHhcCCcccCCCHHHH
Confidence 334444 88999999999999999999998764
|
|
| >KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-32 Score=257.45 Aligned_cols=184 Identities=21% Similarity=0.262 Sum_probs=145.0
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchh-----H--HHHHHHHHHHhhcccCCCcceeeeeccCCCc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYRE-----A--FKNFDIECDMMKHIRHRNLIKIISSCSNDDF 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~-----~--~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 497 (628)
.+.|...+.+|+|+||.|-+|.. .+|+.||||.++..... . .....+|+++|++++|||||+++++++..+.
T Consensus 171 ~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds 250 (475)
T KOG0615|consen 171 NDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDS 250 (475)
T ss_pred cceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCc
Confidence 45677788999999999999986 78999999999753211 1 1224689999999999999999999876554
Q ss_pred c---------------------------------------------------------------------cccccccccc
Q 037488 498 K---------------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 498 ~---------------------------------------------------------------------~DFGla~~~~ 508 (628)
. +|||+|+...
T Consensus 251 ~YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g 330 (475)
T KOG0615|consen 251 SYMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSG 330 (475)
T ss_pred eEEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhccc
Confidence 2 3999999764
Q ss_pred ccCcccccccccccccccCccccccCc---cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceee
Q 037488 509 KEDQSLIQTQTLATIGYMAPEYGREGR---VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVV 585 (628)
Q Consensus 509 ~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (628)
.. ....+.|||+.|.|||++.++. |..|+|+||+|||||-+++|.+||.+.+... .+ .
T Consensus 331 ~~---sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~-sl---------------~ 391 (475)
T KOG0615|consen 331 EG---SFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDP-SL---------------K 391 (475)
T ss_pred cc---eehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCc-cH---------------H
Confidence 22 3446789999999999998754 3448899999999999999999998754322 11 1
Q ss_pred cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.+..+.+...+..|...+.++.++|.+||..||++|||+.|+
T Consensus 392 eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~ea 434 (475)
T KOG0615|consen 392 EQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEA 434 (475)
T ss_pred HHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHH
Confidence 2234455666667788899999999999999999999998874
|
|
| >KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=264.55 Aligned_cols=176 Identities=27% Similarity=0.416 Sum_probs=135.4
Q ss_pred ccccccCCccEEEEEEecCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCC-cc----------
Q 037488 432 NNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDD-FK---------- 498 (628)
Q Consensus 432 ~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~---------- 498 (628)
.+.+|+|+||+||+|.+.....||||++.... ....+.|.+|+.+|.+++|||||+++|+|.+.. ..
T Consensus 46 ~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~G 125 (362)
T KOG0192|consen 46 EEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGG 125 (362)
T ss_pred hhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCC
Confidence 34599999999999999833349999997543 222668999999999999999999999998764 11
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
||||+++...... ...+.
T Consensus 126 sL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~--~~~~~ 203 (362)
T KOG0192|consen 126 SLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISK--TSMTS 203 (362)
T ss_pred cHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCccceeecccc--ccccC
Confidence 4999998754332 22234
Q ss_pred ccccccccCccccc--cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 519 TLATIGYMAPEYGR--EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 519 ~~gt~~y~aPE~~~--~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
..||+.|||||++. ..+|+.|+|||||||++|||+||+.||.+..+.. .....+ ....+
T Consensus 204 ~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~-~~~~v~------------------~~~~R 264 (362)
T KOG0192|consen 204 VAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQ-VASAVV------------------VGGLR 264 (362)
T ss_pred CCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHH-HHHHHH------------------hcCCC
Confidence 68999999999999 5689999999999999999999999998754411 111111 01123
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..+..|++.+..++.+||..||++||++.|+
T Consensus 265 p~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei 296 (362)
T KOG0192|consen 265 PPIPKECPPHLSSLMERCWLVDPSRRPSFLEI 296 (362)
T ss_pred CCCCccCCHHHHHHHHHhCCCCCCcCCCHHHH
Confidence 34455578889999999999999999998764
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-33 Score=276.98 Aligned_cols=342 Identities=27% Similarity=0.376 Sum_probs=286.3
Q ss_pred cCCCcccCCChhccCCCCCCEEecCccC----------CCCCCEEEccCCcce-ecCCccccCCCCCCEEeccCCccccc
Q 037488 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQ----------LQNLEELLLWGNNFS-GTIPSFIFNASKLSRLELQMNSFYGF 72 (628)
Q Consensus 4 s~N~l~~~~p~~~~~l~~L~~L~l~~n~----------l~~L~~L~ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~ 72 (628)
-..++. .+|..++.+.+|+.|.+++|+ |+.|+.+++..|++. .-+|..++.+..|+.|||++|++..
T Consensus 40 nrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E- 117 (1255)
T KOG0444|consen 40 NRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE- 117 (1255)
T ss_pred chhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-
Confidence 334455 478889999999999999997 567888899999884 3467778889999999999999986
Q ss_pred CccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCC
Q 037488 73 IPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIP 152 (628)
Q Consensus 73 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~ 152 (628)
.|..+...+++-.|+|++|+|.++|.. -|-+++.|-.||||+|++.. +|..+..+. .|+.|.+++|.+....-
T Consensus 118 vP~~LE~AKn~iVLNLS~N~IetIPn~-----lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~-~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 118 VPTNLEYAKNSIVLNLSYNNIETIPNS-----LFINLTDLLFLDLSNNRLEM-LPPQIRRLS-MLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred cchhhhhhcCcEEEEcccCccccCCch-----HHHhhHhHhhhccccchhhh-cCHHHHHHh-hhhhhhcCCChhhHHHH
Confidence 588899999999999999999998764 37789999999999999984 555566665 68899999998876655
Q ss_pred ccccCCCCCCEEEccCCcCC-ccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCC
Q 037488 153 EEISNLTNLIAIYLGGNKLN-GSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLT 231 (628)
Q Consensus 153 ~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 231 (628)
..+..+++|+.|.+++.+-+ .-+|.++..|.+|..+|||.|.+. .+|+.+-++.+|+.|+|++|+|+. +....+...
T Consensus 191 rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~ 268 (1255)
T KOG0444|consen 191 RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWE 268 (1255)
T ss_pred hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHh
Confidence 56667888999999887643 357888999999999999999998 789999999999999999999985 445677788
Q ss_pred CCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcC-CCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCC
Q 037488 232 NLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTG-PLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLE 310 (628)
Q Consensus 232 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 310 (628)
+|++|+||.|+++.+|+.++.++.|+.|++.+|+++- -+|..++.+.+|+.+.+++|.+. ..|..++.|..|+.|.|+
T Consensus 269 ~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 269 NLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred hhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccc
Confidence 9999999999999999999999999999999999863 47889999999999999999987 889999999999999999
Q ss_pred CCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEcc
Q 037488 311 YNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVS 358 (628)
Q Consensus 311 ~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~ 358 (628)
+|++- .+|+++.-++.|+.||+..|.---.+|..-..-.++..-++.
T Consensus 348 ~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 348 HNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred cccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 99997 789999999999999999987554444322222445544443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-34 Score=270.01 Aligned_cols=351 Identities=30% Similarity=0.510 Sum_probs=237.9
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccCCC----------CCCEEEccCCcceecCCccccCCCCCCEEeccCCccc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQLQ----------NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFY 70 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~----------~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 70 (628)
++.|+|+++. +|..+.++.+|..++.+.|.+. .|+.|+..+|+++ ..|+.+.++.+|..|++.+|++.
T Consensus 96 l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~ 173 (565)
T KOG0472|consen 96 LNVSHNKLSE-LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK 173 (565)
T ss_pred hhcccchHhh-ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh
Confidence 3567777773 5556677777777777776532 3555666666665 34444445555555555555554
Q ss_pred ccCccccCCCCCCCEEEccCccccCCCCCC----------------cccccccCCCCCcEEEcccCCCCCCCchHHh-cc
Q 037488 71 GFIPNTFGNLRNLNRLGLNDNYLTSSTPKL----------------NFLSSLSNCKYLKYFSFSNNSLDGILPRAIG-NL 133 (628)
Q Consensus 71 ~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~----------------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l 133 (628)
...|+... |+.|++|+...|.++.+|+++ .+++.|.+++.|+.|+++.|+|. ++|.... .+
T Consensus 174 ~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L 251 (565)
T KOG0472|consen 174 ALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHL 251 (565)
T ss_pred hCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhccc
Confidence 44333333 444444444444444443321 11234666777777777777776 4555544 44
Q ss_pred ccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccc----------------
Q 037488 134 SQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEG---------------- 197 (628)
Q Consensus 134 ~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~---------------- 197 (628)
.++.+|++..|++. ..|+.+.-+.+|..||+++|.|+ .+|.+++++ .|+.|.+.+|.+..
T Consensus 252 -~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKy 327 (565)
T KOG0472|consen 252 -NSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKY 327 (565)
T ss_pred -ccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHH
Confidence 36777777777776 45667777777777788777776 456677777 77777777776642
Q ss_pred ------------------------------------------------cCCccccCCCC---CCEEEccCCcCcccCCCC
Q 037488 198 ------------------------------------------------SIPDDLCRLAA---LFQLDLGSNKLSGFVPAS 226 (628)
Q Consensus 198 ------------------------------------------------~~p~~~~~l~~---L~~L~L~~n~l~~~~~~~ 226 (628)
.+|+.+....+ ....+++.|++.. +|..
T Consensus 328 Lrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~ 406 (565)
T KOG0472|consen 328 LRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKR 406 (565)
T ss_pred HHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhh-hhhh
Confidence 11111111111 2334555555542 3444
Q ss_pred ccCCCCC-cEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCC
Q 037488 227 FGNLTNL-RSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQ 305 (628)
Q Consensus 227 ~~~l~~L-~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 305 (628)
+..+..+ +.+.+++|.+.-+|..++.+++|..|+|++|-+. .+|..++.+..|+.|+++.|+|. ..|.+.-.+..++
T Consensus 407 L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lE 484 (565)
T KOG0472|consen 407 LVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLE 484 (565)
T ss_pred hHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHH
Confidence 4444433 4567788888888888999999999999999887 68888999999999999999997 6888877778888
Q ss_pred EEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcce
Q 037488 306 YLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLE 363 (628)
Q Consensus 306 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~ 363 (628)
.+-.++|++....|+.+.+|.+|.+||+.+|.+. .+|..++++.+|++|++++|++.
T Consensus 485 tllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 485 TLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 8888889998777777999999999999999998 56778999999999999999997
|
|
| >KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=264.55 Aligned_cols=175 Identities=26% Similarity=0.387 Sum_probs=140.5
Q ss_pred CcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----------
Q 037488 430 SENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----------- 498 (628)
Q Consensus 430 ~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----------- 498 (628)
...+.||+|.||.||.|++.....||+|.++... .....|.+|+++|++++|+|||+++|+|..++..
T Consensus 209 ~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~-m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~Gs 287 (468)
T KOG0197|consen 209 KLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGS-MSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGS 287 (468)
T ss_pred HHHHHhcCCccceEEEEEEcCCCcccceEEeccc-cChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCc
Confidence 4457899999999999999867789999997642 2346789999999999999999999999886521
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+||. ..++.+......--
T Consensus 288 Ll~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~-~~d~~Y~~~~~~kf 366 (468)
T KOG0197|consen 288 LLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARL-IGDDEYTASEGGKF 366 (468)
T ss_pred HHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEcccccccc-cCCCceeecCCCCC
Confidence 49999994 34444444444456
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhch
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (628)
...|.|||.+..++++.|||||||||+||||+| |+.||..+. ..+.+.. -....+.+.|
T Consensus 367 PIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~ms-----n~ev~~~---------------le~GyRlp~P 426 (468)
T KOG0197|consen 367 PIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMS-----NEEVLEL---------------LERGYRLPRP 426 (468)
T ss_pred CceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCC-----HHHHHHH---------------HhccCcCCCC
Confidence 788999999999999999999999999999999 899986532 2222211 1233466778
Q ss_pred hhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 601 GQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 601 ~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
..||.+++++|..||..+|++|||++
T Consensus 427 ~~CP~~vY~lM~~CW~~~P~~RPtF~ 452 (468)
T KOG0197|consen 427 EGCPDEVYELMKSCWHEDPEDRPTFE 452 (468)
T ss_pred CCCCHHHHHHHHHHhhCCcccCCCHH
Confidence 88999999999999999999999985
|
|
| >KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-31 Score=252.09 Aligned_cols=138 Identities=27% Similarity=0.433 Sum_probs=117.0
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
...++|...+.||.|+||+||+|+. .++..||||.+... .....+....|+++|+.++|||||++++++..++..
T Consensus 7 ~~~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~l 86 (429)
T KOG0595|consen 7 RVVGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYL 86 (429)
T ss_pred cccccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEE
Confidence 4457889899999999999999997 67899999999765 455567788999999999999999998765443321
Q ss_pred ----------------------------------------------------------------------cccccccccc
Q 037488 499 ----------------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 499 ----------------------------------------------------------------------~DFGla~~~~ 508 (628)
+|||+||.+.
T Consensus 87 VMEyC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~ 166 (429)
T KOG0595|consen 87 VMEYCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQ 166 (429)
T ss_pred EEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCC
Confidence 4999999876
Q ss_pred ccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccC
Q 037488 509 KEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFS 564 (628)
Q Consensus 509 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~ 564 (628)
.. .+..+.+|++.|||||++..++|+.|+|+||.|+|+|||++|++||+...+
T Consensus 167 ~~---~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~ 219 (429)
T KOG0595|consen 167 PG---SMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETP 219 (429)
T ss_pred ch---hHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCH
Confidence 44 344678999999999999999999999999999999999999999986543
|
|
| >KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-31 Score=279.36 Aligned_cols=183 Identities=27% Similarity=0.467 Sum_probs=145.7
Q ss_pred hcCCCcccccccCCccEEEEEEec------CCcEEEEEEeeccchh-HHHHHHHHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQYRE-AFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
..+....+.||||+||.||+|+.. +.+.||||.++..... ..++|.||+++++.++|||||+|+|+|.+++..
T Consensus 485 r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~ 564 (774)
T KOG1026|consen 485 RSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPL 564 (774)
T ss_pred hhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCee
Confidence 344455678999999999998742 3567999999865444 678999999999999999999999999876532
Q ss_pred --------------------------------------------------------------------------------
Q 037488 499 -------------------------------------------------------------------------------- 498 (628)
Q Consensus 499 -------------------------------------------------------------------------------- 498 (628)
T Consensus 565 ~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~l~VKI 644 (774)
T KOG1026|consen 565 CMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGENLVVKI 644 (774)
T ss_pred EEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceeccceEEEe
Confidence
Q ss_pred ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhc
Q 037488 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLL 577 (628)
Q Consensus 499 ~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~ 577 (628)
+|||++|.....+.+.......-.++|||||.+..++|+++||||||||||||+++ |+.||.+...++
T Consensus 645 sDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~E----------- 713 (774)
T KOG1026|consen 645 SDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQE----------- 713 (774)
T ss_pred cccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHH-----------
Confidence 39999998766655544445567899999999999999999999999999999999 899987643322
Q ss_pred CCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 578 PISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+++....+. ....|..||.++++||..||+.+|++||++.||
T Consensus 714 ------VIe~i~~g~---lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI 755 (774)
T KOG1026|consen 714 ------VIECIRAGQ---LLSCPENCPTEVYSLMLECWNENPKRRPSFKEI 755 (774)
T ss_pred ------HHHHHHcCC---cccCCCCCCHHHHHHHHHHhhcCcccCCCHHHH
Confidence 111111111 144567899999999999999999999999875
|
|
| >KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-31 Score=238.51 Aligned_cols=177 Identities=23% Similarity=0.326 Sum_probs=136.7
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeee------------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISS------------ 491 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~------------ 491 (628)
.+|.+.+.||.|.||.||++.. .+|..||.|.+... +....+....|+.+|++++|||||+.+++
T Consensus 19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlniv 98 (375)
T KOG0591|consen 19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIV 98 (375)
T ss_pred HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHH
Confidence 4678889999999999999875 78999999998743 34456678899999999999999998772
Q ss_pred ---ccCCCcc-------------------------------------------------------------ccccccccc
Q 037488 492 ---CSNDDFK-------------------------------------------------------------ADFGMAKPL 507 (628)
Q Consensus 492 ---~~~~~~~-------------------------------------------------------------~DFGla~~~ 507 (628)
|..+|.- .|||++|.+
T Consensus 99 mE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l 178 (375)
T KOG0591|consen 99 MELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFL 178 (375)
T ss_pred HHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHh
Confidence 3333311 399999987
Q ss_pred cccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecc
Q 037488 508 LKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587 (628)
Q Consensus 508 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (628)
..... ...+.+|||+||+||.+.+.+|+.|+||||+||++|||+.-++||.+. .+......
T Consensus 179 ~s~~t--fA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~-----n~~~L~~K------------ 239 (375)
T KOG0591|consen 179 SSKTT--FAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD-----NLLSLCKK------------ 239 (375)
T ss_pred cchhH--HHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc-----cHHHHHHH------------
Confidence 65432 345679999999999999999999999999999999999999999752 22222211
Q ss_pred cccCCcccchhch-hhhHHHHHHHhhcccCCCcccCCCC
Q 037488 588 HLLSQEDKHFVIK-GQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 588 ~~~~~~~~~~~~~-~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
+-.++ . ++.| .-.+.++.++|..|+..||+.||+.
T Consensus 240 I~qgd--~-~~~p~~~YS~~l~~li~~ci~vd~~~RP~t 275 (375)
T KOG0591|consen 240 IEQGD--Y-PPLPDEHYSTDLRELINMCIAVDPEQRPDT 275 (375)
T ss_pred HHcCC--C-CCCcHHHhhhHHHHHHHHHccCCcccCCCc
Confidence 11111 1 1233 3457789999999999999999973
|
|
| >KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-30 Score=232.86 Aligned_cols=198 Identities=23% Similarity=0.250 Sum_probs=142.0
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchh--HHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYRE--AFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.+|...+.+|||+||+||+|+. .+|+.||||+++..... ....+.|||+.|+.++|||||.+++++...+..
T Consensus 2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfE 81 (318)
T KOG0659|consen 2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFE 81 (318)
T ss_pred chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEE
Confidence 4678889999999999999987 78999999999865432 245678999999999999999999988654321
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|+.+...... .+
T Consensus 82 fm~tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~--~~ 159 (318)
T KOG0659|consen 82 FMPTDLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRI--QT 159 (318)
T ss_pred eccccHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeecccchhccCCCCcc--cc
Confidence 599999988665443 24
Q ss_pred cccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhc----CCccce---eecccc
Q 037488 518 QTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL----PISVMK---VVDAHL 589 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~ 589 (628)
..+-|.||+|||.+.|.+ |+..+||||.|||+.||+-|.+-|.+..+ .+.....-+.+ ++.+.+ ..|...
T Consensus 160 ~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sD--idQL~~If~~LGTP~~~~WP~~~~lpdY~~ 237 (318)
T KOG0659|consen 160 HQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSD--IDQLSKIFRALGTPTPDQWPEMTSLPDYVK 237 (318)
T ss_pred cceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCch--HHHHHHHHHHcCCCCcccCccccccccHHH
Confidence 458999999999988754 99999999999999999999887765322 11111111211 111111 111111
Q ss_pred cCCccc--chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 LSQEDK--HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 ~~~~~~--~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+. .......++.++.||+.++|.+||.+|+|++|+
T Consensus 238 ~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qa 278 (318)
T KOG0659|consen 238 IQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQA 278 (318)
T ss_pred HhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHH
Confidence 111110 011234567788999999999999999999874
|
|
| >KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-30 Score=248.47 Aligned_cols=181 Identities=24% Similarity=0.331 Sum_probs=141.5
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
...|...+.||+|.||.||+|.. .+++.||+|+++... ......+.+|+.++..++++||.+.+|.+..+...
T Consensus 12 ~~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMe 91 (467)
T KOG0201|consen 12 ELLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIME 91 (467)
T ss_pred ccccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHH
Confidence 44677778999999999999987 789999999998754 44567889999999999999999988865432211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|..+..... ...
T Consensus 92 y~~gGsv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~--rr~ 169 (467)
T KOG0201|consen 92 YCGGGSVLDLLKSGNILDEFEIAVILREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVK--RRK 169 (467)
T ss_pred HhcCcchhhhhccCCCCccceeeeehHHHHHHhhhhhhcceecccccccceeEeccCcEEEEecceeeeeechhh--ccc
Confidence 49999987644432 236
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccch
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHF 597 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (628)
+++||++|||||++.+..|+.|+||||+|++.+||++|.+|+.+..+.. ..-.+.+. .++
T Consensus 170 tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmr--------------vlflIpk~------~PP 229 (467)
T KOG0201|consen 170 TFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMR--------------VLFLIPKS------APP 229 (467)
T ss_pred cccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcce--------------EEEeccCC------CCC
Confidence 7899999999999998899999999999999999999999998765421 11111111 112
Q ss_pred hchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 598 VIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 598 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+++.+++++..|+++||+.||+|.++
T Consensus 230 ~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~L 260 (467)
T KOG0201|consen 230 RLDGDFSPPFKEFVEACLDKNPEFRPSAKEL 260 (467)
T ss_pred ccccccCHHHHHHHHHHhhcCcccCcCHHHH
Confidence 2233567789999999999999999999764
|
|
| >KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=246.63 Aligned_cols=201 Identities=23% Similarity=0.205 Sum_probs=142.1
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF---- 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 497 (628)
..+.|+..+.||+|+||.||+|+. .+|+.||+|++..+. ......+.|||.||++++|||||+|.+...+...
T Consensus 115 ~~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siY 194 (560)
T KOG0600|consen 115 RADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIY 194 (560)
T ss_pred chHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEE
Confidence 345678889999999999999986 789999999997654 4556778899999999999999999886544310
Q ss_pred ----------------------------------------------------------------cccccccccccccCcc
Q 037488 498 ----------------------------------------------------------------KADFGMAKPLLKEDQS 513 (628)
Q Consensus 498 ----------------------------------------------------------------~~DFGla~~~~~~~~~ 513 (628)
.+|||+|+.+.... .
T Consensus 195 lVFeYMdhDL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~-~ 273 (560)
T KOG0600|consen 195 LVFEYMDHDLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSG-S 273 (560)
T ss_pred EEEecccchhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEeccccceeeccCCC-C
Confidence 05999999775543 2
Q ss_pred cccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcC--Cccceeec---c
Q 037488 514 LIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLP--ISVMKVVD---A 587 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~ 587 (628)
...+..+-|+||+|||.+.|. .|+..+|+||.|||+.||++|++.|.+...-++ +..+.+..-. +......+ .
T Consensus 274 ~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQ-l~kIfklcGSP~e~~W~~~kLP~~ 352 (560)
T KOG0600|consen 274 APYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQ-LHKIFKLCGSPTEDYWPVSKLPHA 352 (560)
T ss_pred cccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHH-HHHHHHHhCCCChhccccccCCcc
Confidence 345778999999999999885 599999999999999999999999976432111 1111111110 11111100 0
Q ss_pred ccc-CCcccch---hchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 588 HLL-SQEDKHF---VIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 588 ~~~-~~~~~~~---~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
... ....... +.....++.+.+|+..+|..||++|.||.+
T Consensus 353 ~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~ 396 (560)
T KOG0600|consen 353 TIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASS 396 (560)
T ss_pred cccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHH
Confidence 000 0010000 011234677999999999999999999865
|
|
| >KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-30 Score=233.23 Aligned_cols=183 Identities=18% Similarity=0.289 Sum_probs=147.4
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++.|+..+.||+|.|++||++.. ++|+.+|+|.++.. ...+.+.+.+|++|-+.++|||||+|.+.+..+.+.
T Consensus 10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvF 89 (355)
T KOG0033|consen 10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 89 (355)
T ss_pred chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEE
Confidence 56788889999999999999764 78999999998643 233567789999999999999999997755433221
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|..+. . .
T Consensus 90 e~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~-~--g 166 (355)
T KOG0033|consen 90 DLVTGGELFEDIVAREFYSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVN-D--G 166 (355)
T ss_pred ecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEeC-C--c
Confidence 5999999875 2 2
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
....+.+||++|||||++...+|+..+||||.|||||-++.|.+||.+.... .+.+.+..+..
T Consensus 167 ~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~-----------------rlye~I~~g~y 229 (355)
T KOG0033|consen 167 EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH-----------------RLYEQIKAGAY 229 (355)
T ss_pred cccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHH-----------------HHHHHHhcccc
Confidence 3456789999999999999999999999999999999999999999652211 12233445555
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+...+.++..++++++|+.+||..||.+|.|+.|+
T Consensus 230 d~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EA 264 (355)
T KOG0033|consen 230 DYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEA 264 (355)
T ss_pred CCCCcccCcCCHHHHHHHHHHhccChhhhccHHHH
Confidence 66666777888999999999999999999998763
|
|
| >KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-29 Score=248.83 Aligned_cols=177 Identities=23% Similarity=0.374 Sum_probs=139.1
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
++|...+.||+|+||.||||+. .+.+.||+|.+.+.. .+..+...+|++++++++|||||.++++|+.....
T Consensus 2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte 81 (808)
T KOG0597|consen 2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE 81 (808)
T ss_pred cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence 5688889999999999999987 568999999997542 34567789999999999999999999887643211
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
||||+||.+... ..+.++
T Consensus 82 ~a~g~L~~il~~d~~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~--t~vlts 159 (808)
T KOG0597|consen 82 YAVGDLFTILEQDGKLPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTN--TSVLTS 159 (808)
T ss_pred hhhhhHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhhhhhhcccC--ceeeee
Confidence 599999976543 344566
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
..||+.|||||+..+++|+..+|.||+||++|||++|++||... .+.+.++.... . ...
T Consensus 160 ikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~-----si~~Lv~~I~~------------d----~v~ 218 (808)
T KOG0597|consen 160 IKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYAR-----SITQLVKSILK------------D----PVK 218 (808)
T ss_pred ccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHH-----HHHHHHHHHhc------------C----CCC
Confidence 67999999999999999999999999999999999999999541 12222222211 1 112
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
.|...+..+..++...+.+||.+|.|-.
T Consensus 219 ~p~~~S~~f~nfl~gLL~kdP~~RltW~ 246 (808)
T KOG0597|consen 219 PPSTASSSFVNFLQGLLIKDPAQRLTWT 246 (808)
T ss_pred CcccccHHHHHHHHHHhhcChhhcccHH
Confidence 3346678899999999999999998743
|
|
| >KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-29 Score=251.42 Aligned_cols=169 Identities=25% Similarity=0.416 Sum_probs=134.2
Q ss_pred CcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----------
Q 037488 430 SENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----------- 498 (628)
Q Consensus 430 ~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----------- 498 (628)
..++-+|.|+-|.||+|+++ ++.||||+++.... -+|+.|++++||||+.+.|+|.....+
T Consensus 127 sELeWlGSGaQGAVF~Grl~-netVAVKKV~elkE-------TdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~Gq 198 (904)
T KOG4721|consen 127 SELEWLGSGAQGAVFLGRLH-NETVAVKKVRELKE-------TDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQ 198 (904)
T ss_pred hhhhhhccCcccceeeeecc-CceehhHHHhhhhh-------hhHHHHHhccCcceeeEeeeecCCceeEEeeecccccc
Confidence 34567999999999999988 78899999864332 368889999999999999998754322
Q ss_pred -------------------------------------------------------ccccccccccccCcccccccccccc
Q 037488 499 -------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLATI 523 (628)
Q Consensus 499 -------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt~ 523 (628)
+|||.++..... ...++++||.
T Consensus 199 L~~VLka~~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~---STkMSFaGTV 275 (904)
T KOG4721|consen 199 LYEVLKAGRPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDFGTSKELSDK---STKMSFAGTV 275 (904)
T ss_pred HHHHHhccCccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEEeccccchHhhhhh---hhhhhhhhhH
Confidence 499999976443 2335689999
Q ss_pred cccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhh
Q 037488 524 GYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQC 603 (628)
Q Consensus 524 ~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (628)
.|||||++...++++|+||||||||||||+||..||.+..... ++.. .+...-..+.|..|
T Consensus 276 aWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssA-----------------IIwG--VGsNsL~LpvPstc 336 (904)
T KOG4721|consen 276 AWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSA-----------------IIWG--VGSNSLHLPVPSTC 336 (904)
T ss_pred hhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchhe-----------------eEEe--ccCCcccccCcccC
Confidence 9999999999999999999999999999999999997643211 1110 11122234567789
Q ss_pred HHHHHHHhhcccCCCcccCCCCCCC
Q 037488 604 VSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 604 ~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.-++-|++.||+-.|..||+++++
T Consensus 337 P~GfklL~Kqcw~sKpRNRPSFrqi 361 (904)
T KOG4721|consen 337 PDGFKLLLKQCWNSKPRNRPSFRQI 361 (904)
T ss_pred chHHHHHHHHHHhcCCCCCccHHHH
Confidence 9999999999999999999999764
|
|
| >KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-29 Score=230.53 Aligned_cols=200 Identities=22% Similarity=0.233 Sum_probs=137.1
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchh--HHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYRE--AFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
..+.|+..+.|++|+||.||+|++ .+++.||+|+++..... ..-...|||.+|.+++|||||.+.++..+.+..
T Consensus 74 sv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy 153 (419)
T KOG0663|consen 74 SVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIY 153 (419)
T ss_pred cHHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceee
Confidence 345688889999999999999997 67999999999865422 223458999999999999999987765432210
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
||||+||.+....
T Consensus 154 ~VMe~~EhDLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~-- 231 (419)
T KOG0663|consen 154 IVMEYVEHDLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAREYGSPL-- 231 (419)
T ss_pred eeHHHHHhhHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEecccchhhhhcCCc--
Confidence 5999999875542
Q ss_pred cccccccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhh-cCC-c-ccee-----
Q 037488 514 LIQTQTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDL-LPI-S-VMKV----- 584 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~-~~~-~-~~~~----- 584 (628)
...+..+-|+||+|||.+.|.+ |++.+|+||+|||+.||+++++-|.+...-++ +...+... .|. . +...
T Consensus 232 k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQ-l~~If~llGtPte~iwpg~~~lp~ 310 (419)
T KOG0663|consen 232 KPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQ-LDKIFKLLGTPSEAIWPGYSELPA 310 (419)
T ss_pred ccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHH-HHHHHHHhCCCccccCCCccccch
Confidence 2346678999999999998865 99999999999999999999998876432111 11111110 110 0 0000
Q ss_pred ecccccCCccc---chhchhh-hHHHHHHHhhcccCCCcccCCCCCC
Q 037488 585 VDAHLLSQEDK---HFVIKGQ-CVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 585 ~~~~~~~~~~~---~~~~~~~-~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
+...-....+. +...+.. .+.+..+|+...+.+||.+|.||.|
T Consensus 311 ~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~ 357 (419)
T KOG0663|consen 311 VKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAED 357 (419)
T ss_pred hhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHH
Confidence 00000000000 0001111 3477899999999999999999976
|
|
| >KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-29 Score=245.98 Aligned_cols=198 Identities=19% Similarity=0.211 Sum_probs=141.4
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHH--HHHHHHHhhccc-CCCcceeeeeccCCC-cc-
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKN--FDIECDMMKHIR-HRNLIKIISSCSNDD-FK- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~--~~~E~~~l~~l~-h~niv~l~~~~~~~~-~~- 498 (628)
..++|...+.+|.|+||.||+|+. .+|..||||+++..-.. +++ =.|||+.|+++. |||||++.+++.+.+ ..
T Consensus 8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s-~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~ 86 (538)
T KOG0661|consen 8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYS-WEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILY 86 (538)
T ss_pred HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhcc-HHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEe
Confidence 356788889999999999999986 67999999999764322 232 268999999998 999999999887665 11
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+||.+.....
T Consensus 87 fVfE~Md~NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpP- 165 (538)
T KOG0661|consen 87 FVFEFMDCNLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGNDVIKIADFGLAREVRSKPP- 165 (538)
T ss_pred eeHHhhhhhHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEecccceeEecccccccccccCCC-
Confidence 59999998765543
Q ss_pred cccccccccccccCccccc-cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC--ccc--------
Q 037488 514 LIQTQTLATIGYMAPEYGR-EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI--SVM-------- 582 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~-~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~--~~~-------- 582 (628)
.+..+.|.||+|||++. .+-|+.++|+||+|||++|+.+-++-|.+...-++..+..-....|. .+.
T Consensus 166 --YTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~ 243 (538)
T KOG0661|consen 166 --YTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASA 243 (538)
T ss_pred --cchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHH
Confidence 47789999999999876 46699999999999999999999998876433222222111111111 010
Q ss_pred -eeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 583 -KVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 583 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...-+...+. +..... +.++.++.+++.+|+++||++||||.|+
T Consensus 244 mnf~~P~~~~~-~l~~L~-p~~s~~~~~li~~ll~WDP~kRpTA~~a 288 (538)
T KOG0661|consen 244 MNFRFPQVKPS-PLKDLL-PNASSEAASLIERLLAWDPDKRPTASQA 288 (538)
T ss_pred hccCCCcCCCC-ChHHhC-cccCHHHHHHHHHHhcCCCccCccHHHH
Confidence 0001111110 011112 2378899999999999999999999763
|
|
| >KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-29 Score=248.09 Aligned_cols=191 Identities=27% Similarity=0.375 Sum_probs=142.0
Q ss_pred HHHHHhhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc
Q 037488 420 LELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF 497 (628)
Q Consensus 420 ~~l~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 497 (628)
.++....+.+.....||+|.||+||+|+|+ | .||||+++... .+..+.|+.||.++++-||-||+=++|||.....
T Consensus 385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~wh-G-dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~ 462 (678)
T KOG0193|consen 385 EEWEIPPEEVLLGERIGSGSFGTVYRGRWH-G-DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPL 462 (678)
T ss_pred cccccCHHHhhccceeccccccceeecccc-c-ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCce
Confidence 455555666677889999999999999986 3 39999997643 4568899999999999999999999999876543
Q ss_pred c------------------------------------------------------------------ccccccccccccC
Q 037488 498 K------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 498 ~------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
. .|||+|..-....
T Consensus 463 AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~ 542 (678)
T KOG0193|consen 463 AIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWS 542 (678)
T ss_pred eeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEecccceeeeeeec
Confidence 1 3999997533222
Q ss_pred cccccccccccccccCccccccC---ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccc
Q 037488 512 QSLIQTQTLATIGYMAPEYGREG---RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~---~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (628)
+........|...|||||+++.+ +|++.+||||||||+|||+||..||....++.+.+ + +-..
T Consensus 543 g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIif---m-----------VGrG 608 (678)
T KOG0193|consen 543 GEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIF---M-----------VGRG 608 (678)
T ss_pred cccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEE---E-----------eccc
Confidence 22223445699999999999754 59999999999999999999999997432222111 0 0000
Q ss_pred ccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. -.........|+.++++|+..||.+++++||.+.+|
T Consensus 609 ~l--~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~i 646 (678)
T KOG0193|consen 609 YL--MPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQL 646 (678)
T ss_pred cc--CccchhhhccCHHHHHHHHHHHHhcCcccCccHHHH
Confidence 00 011223445788999999999999999999998754
|
|
| >KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-29 Score=247.31 Aligned_cols=183 Identities=23% Similarity=0.299 Sum_probs=142.9
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
...|..-..||+|+.|.||.|+. .+++.||||+++.......+-+..|+.+|+..+|+|||++++.|..++..
T Consensus 272 ~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEy 351 (550)
T KOG0578|consen 272 RSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEY 351 (550)
T ss_pred hhhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEee
Confidence 45677788999999999999975 77999999999877665667789999999999999999987755332210
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
.|||++..+..... ...+.
T Consensus 352 m~ggsLTDvVt~~~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~--KR~Tm 429 (550)
T KOG0578|consen 352 MEGGSLTDVVTKTRMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQS--KRSTM 429 (550)
T ss_pred cCCCchhhhhhcccccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeeeeeccccccC--ccccc
Confidence 39999998765532 34678
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhc
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVI 599 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (628)
+||++|||||++....|++|+||||+|++.+||+-|++||-...+ +.+...- ..........
T Consensus 430 VGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~P----lrAlyLI--------------a~ng~P~lk~ 491 (550)
T KOG0578|consen 430 VGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENP----LRALYLI--------------ATNGTPKLKN 491 (550)
T ss_pred cCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCCh----HHHHHHH--------------hhcCCCCcCC
Confidence 999999999999999999999999999999999999999964222 2111100 0011112234
Q ss_pred hhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 600 KGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 600 ~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+...++++++|+.+||+.|+++||++.|+
T Consensus 492 ~~klS~~~kdFL~~cL~~dv~~RasA~eL 520 (550)
T KOG0578|consen 492 PEKLSPELKDFLDRCLVVDVEQRASAKEL 520 (550)
T ss_pred ccccCHHHHHHHHHHhhcchhcCCCHHHH
Confidence 45567889999999999999999999874
|
|
| >KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-28 Score=232.96 Aligned_cols=178 Identities=25% Similarity=0.312 Sum_probs=138.2
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
...++|+..+.||+|+||.||.++. .+++.+|+|++++.. ....+...+|..+|.+++||.||+++-.+.+++..
T Consensus 22 ~~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLy 101 (357)
T KOG0598|consen 22 VGPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLY 101 (357)
T ss_pred CChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEE
Confidence 4467899999999999999999986 679999999997542 23467788999999999999999998777654321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+++......
T Consensus 102 lVld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~-- 179 (357)
T KOG0598|consen 102 LVLDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDG-- 179 (357)
T ss_pred EEEeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccchhcccCC--
Confidence 4999999654432
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
..+.++|||+.|||||++.+..|+..+|.||+||++|||++|.+||.... ...+... +....
T Consensus 180 ~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~-----~~~~~~~------------I~~~k- 241 (357)
T KOG0598|consen 180 DATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAED-----VKKMYDK------------ILKGK- 241 (357)
T ss_pred CccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCcc-----HHHHHHH------------HhcCc-
Confidence 23456899999999999999999999999999999999999999997532 2222222 11111
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERV 623 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp 623 (628)
....+.-.+.++++++.+.+++||++|.
T Consensus 242 --~~~~p~~ls~~ardll~~LL~rdp~~RL 269 (357)
T KOG0598|consen 242 --LPLPPGYLSEEARDLLKKLLKRDPRQRL 269 (357)
T ss_pred --CCCCCccCCHHHHHHHHHHhccCHHHhc
Confidence 0111222466799999999999999996
|
|
| >KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-28 Score=265.19 Aligned_cols=180 Identities=24% Similarity=0.436 Sum_probs=139.3
Q ss_pred CCCcccccccCCccEEEEEEec--CC----cEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 428 GFSENNLIDRGGIGYVYKRRIH--YG----MEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~~--~~----~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
.....+.||+|+||.||+|... .| ..||||.++.. +.+....|.+|..+|++++|||||+++|+|.+....
T Consensus 693 ~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i 772 (1025)
T KOG1095|consen 693 NVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLI 772 (1025)
T ss_pred heEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEE
Confidence 3445678999999999999863 24 34999999764 455678899999999999999999999998653211
Q ss_pred -----------------------------------------------------------------------ccccccccc
Q 037488 499 -----------------------------------------------------------------------ADFGMAKPL 507 (628)
Q Consensus 499 -----------------------------------------------------------------------~DFGla~~~ 507 (628)
+|||+||.+
T Consensus 773 ~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDi 852 (1025)
T KOG1095|consen 773 LLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIADFGLARDI 852 (1025)
T ss_pred EehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEcccchhHhh
Confidence 499999976
Q ss_pred cccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeec
Q 037488 508 LKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVD 586 (628)
Q Consensus 508 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (628)
.....+.......-...|||||.+..+.++.|+|||||||+|||++| |..||.+....+ ++.
T Consensus 853 y~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~-----------------v~~ 915 (1025)
T KOG1095|consen 853 YDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFE-----------------VLL 915 (1025)
T ss_pred hhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHH-----------------HHH
Confidence 55544433333345679999999999999999999999999999999 899997643211 111
Q ss_pred ccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 587 AHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
..+. ..+...|..|+..++++|..||+-+|++||++..
T Consensus 916 ~~~~---ggRL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~ 953 (1025)
T KOG1095|consen 916 DVLE---GGRLDPPSYCPEKLYQLMLQCWKHDPEDRPSFRT 953 (1025)
T ss_pred HHHh---CCccCCCCCCChHHHHHHHHHccCChhhCccHHH
Confidence 1111 1155677889999999999999999999999864
|
|
| >KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-28 Score=230.58 Aligned_cols=204 Identities=24% Similarity=0.251 Sum_probs=142.7
Q ss_pred HHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEee--ccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc--
Q 037488 423 FQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFD--LQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF-- 497 (628)
Q Consensus 423 ~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~--~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-- 497 (628)
+.....|...+.||+|+||.|+.|.. .+|+.||||++. .......++..||+++++.++|+|||.+++++.....
T Consensus 18 ~~i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~ 97 (359)
T KOG0660|consen 18 FEIPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDK 97 (359)
T ss_pred EeccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccc
Confidence 34456677778999999999999987 789999999997 3456667889999999999999999999988754110
Q ss_pred -c-------------------------------------------------------------------ccccccccccc
Q 037488 498 -K-------------------------------------------------------------------ADFGMAKPLLK 509 (628)
Q Consensus 498 -~-------------------------------------------------------------------~DFGla~~~~~ 509 (628)
. ||||+||....
T Consensus 98 f~DvYiV~elMetDL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~ 177 (359)
T KOG0660|consen 98 FNDVYLVFELMETDLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLARYLDK 177 (359)
T ss_pred cceeEEehhHHhhHHHHHHHcCccccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEeccccceeeccc
Confidence 0 59999998754
Q ss_pred cCcccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc----ccee
Q 037488 510 EDQSLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS----VMKV 584 (628)
Q Consensus 510 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~ 584 (628)
.......+..+.|.||+|||++.. ..|+..+||||.|||+.||++|++-|.+...-. .........+.. ...+
T Consensus 178 ~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~--Ql~lI~~~lGtP~~e~l~~i 255 (359)
T KOG0660|consen 178 FFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVH--QLQLILELLGTPSEEDLQKI 255 (359)
T ss_pred cCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHH--HHHHHHHhcCCCCHHHHHHh
Confidence 322334467899999999998764 579999999999999999999999886532211 111111111110 0000
Q ss_pred ec----ccccC---Ccccc-hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 585 VD----AHLLS---QEDKH-FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 585 ~~----~~~~~---~~~~~-~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
-. +.+.. ..... ....+...+.+++|+.+||..||.+|+|++|+
T Consensus 256 ~s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eA 307 (359)
T KOG0660|consen 256 RSEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEA 307 (359)
T ss_pred ccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHH
Confidence 00 00000 00000 01223567789999999999999999998763
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-28 Score=248.26 Aligned_cols=175 Identities=25% Similarity=0.387 Sum_probs=142.0
Q ss_pred ccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--------------
Q 037488 434 LIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-------------- 498 (628)
Q Consensus 434 ~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-------------- 498 (628)
++|+|+||+||-|++ .+...+|||.+.....+..+....||.+.+.++|.|||+.+|.|.++.+.
T Consensus 582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSs 661 (1226)
T KOG4279|consen 582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSS 661 (1226)
T ss_pred EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHH
Confidence 699999999999997 66778999999876666777889999999999999999999998765432
Q ss_pred --------------------------------------------------------ccccccccccccCccccccccccc
Q 037488 499 --------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLAT 522 (628)
Q Consensus 499 --------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt 522 (628)
+|||.++.+..-. -.+.++.||
T Consensus 662 LLrskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAgin--P~TETFTGT 739 (1226)
T KOG4279|consen 662 LLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGIN--PCTETFTGT 739 (1226)
T ss_pred HHHhccCCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecccccchhhccCC--ccccccccc
Confidence 3999999764322 234567899
Q ss_pred ccccCccccccCc--cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhch
Q 037488 523 IGYMAPEYGREGR--VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600 (628)
Q Consensus 523 ~~y~aPE~~~~~~--~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (628)
+.|||||++..++ |+..+|||||||.+.||+||++||-+..... +++. . .+-+...+++|
T Consensus 740 LQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~Elgspq---AAMF------------k---VGmyKvHP~iP 801 (1226)
T KOG4279|consen 740 LQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQ---AAMF------------K---VGMYKVHPPIP 801 (1226)
T ss_pred hhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChh---Hhhh------------h---hcceecCCCCc
Confidence 9999999998765 9999999999999999999999997642211 1111 1 12344567788
Q ss_pred hhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 601 GQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 601 ~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+.+.+++.+|.+|+..||.+||+|.++
T Consensus 802 eelsaeak~FilrcFepd~~~R~sA~~L 829 (1226)
T KOG4279|consen 802 EELSAEAKNFILRCFEPDPCDRPSAKDL 829 (1226)
T ss_pred HHHHHHHHHHHHHHcCCCcccCccHHHh
Confidence 8899999999999999999999999764
|
|
| >KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-27 Score=230.35 Aligned_cols=193 Identities=21% Similarity=0.270 Sum_probs=141.1
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
..+.|+..+.||.|..++||+|+. +.+..||||+++... ......+.+|+..|+.++|||||+.+..|..+...
T Consensus 24 n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVm 103 (516)
T KOG0582|consen 24 NAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVM 103 (516)
T ss_pred CccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEee
Confidence 356788899999999999999985 788999999998754 33467889999999999999999998877544321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||++..+...+...
T Consensus 104 pfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~ 183 (516)
T KOG0582|consen 104 PFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQ 183 (516)
T ss_pred hhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCceeeeeecccCcee
Confidence 4999998776544221
Q ss_pred -cc-ccccccccccCcccccc--CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 515 -IQ-TQTLATIGYMAPEYGRE--GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 515 -~~-~~~~gt~~y~aPE~~~~--~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
.. .+.+||++|||||++.. ..|+.|+||||||+...|+++|..||....+....+... ....|.......
T Consensus 184 ~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tL-qn~pp~~~t~~~----- 257 (516)
T KOG0582|consen 184 VTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTL-QNDPPTLLTSGL----- 257 (516)
T ss_pred eEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHh-cCCCCCcccccC-----
Confidence 11 56689999999999554 349999999999999999999999998754432222111 111111110011
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
........+..+++++..|+++||++|||++++
T Consensus 258 -----~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskL 290 (516)
T KOG0582|consen 258 -----DKDEDKKFSKSFREMIALCLVKDPSKRPTASKL 290 (516)
T ss_pred -----ChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHH
Confidence 111222345679999999999999999998763
|
|
| >KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-27 Score=238.88 Aligned_cols=187 Identities=25% Similarity=0.357 Sum_probs=145.5
Q ss_pred HHHHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 420 LELFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 420 ~~l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
+.+.....+......+|-|.||.||.|.| +....||||.++.+. .....|.+|+.+|+.++|||+|+|+|+|+.+...
T Consensus 260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDt-MeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPF 338 (1157)
T KOG4278|consen 260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPF 338 (1157)
T ss_pred chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcc-hhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCe
Confidence 44444555566678999999999999998 567889999997543 3467899999999999999999999999875422
Q ss_pred --------------------------------------------------------------------cccccccccccc
Q 037488 499 --------------------------------------------------------------------ADFGMAKPLLKE 510 (628)
Q Consensus 499 --------------------------------------------------------------------~DFGla~~~~~~ 510 (628)
+|||++|.+..+
T Consensus 339 YIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgD 418 (1157)
T KOG4278|consen 339 YIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGD 418 (1157)
T ss_pred EEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccchhhhhcCC
Confidence 499999987544
Q ss_pred CcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccc
Q 037488 511 DQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589 (628)
Q Consensus 511 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (628)
. +....+.--.+.|.|||-+....++.|+|||+|||+|||++| |-.||.++. +.+... ++
T Consensus 419 T-YTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGid-----lSqVY~---------LL---- 479 (1157)
T KOG4278|consen 419 T-YTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGID-----LSQVYG---------LL---- 479 (1157)
T ss_pred c-eecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCcc-----HHHHHH---------HH----
Confidence 2 222222334678999999999999999999999999999999 899987642 222111 11
Q ss_pred cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...++...|..|++.+++||..||+++|.+||++.|+
T Consensus 480 --EkgyRM~~PeGCPpkVYeLMraCW~WsPsDRPsFaei 516 (1157)
T KOG4278|consen 480 --EKGYRMDGPEGCPPKVYELMRACWNWSPSDRPSFAEI 516 (1157)
T ss_pred --hccccccCCCCCCHHHHHHHHHHhcCCcccCccHHHH
Confidence 1234556677899999999999999999999998864
|
|
| >KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-28 Score=243.23 Aligned_cols=179 Identities=22% Similarity=0.285 Sum_probs=143.4
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.+.|...+.+|.|+.|.|..|+. .+|+.+|||++.... ......+.+||.+|+-+.||||+++++++++....
T Consensus 11 iGpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylv 90 (786)
T KOG0588|consen 11 IGPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLV 90 (786)
T ss_pred ccceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEE
Confidence 46788889999999999999986 789999999996542 22345678999999999999999999988764321
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
||||+|.....+ ..
T Consensus 91 lEyv~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~g---kl 167 (786)
T KOG0588|consen 91 LEYVPGGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMASLEVPG---KL 167 (786)
T ss_pred EEecCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcccCEeeeccceeecccCC---cc
Confidence 599999865433 23
Q ss_pred cccccccccccCccccccCcc-CcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 516 QTQTLATIGYMAPEYGREGRV-STNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~-~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
..+.||++.|.|||++.|.+| +.++||||.|||||.++||+.||++. .+... ..+...+
T Consensus 168 LeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDd-----Nir~L------------LlKV~~G--- 227 (786)
T KOG0588|consen 168 LETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDD-----NIRVL------------LLKVQRG--- 227 (786)
T ss_pred ccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCc-----cHHHH------------HHHHHcC---
Confidence 467799999999999999998 67999999999999999999999742 22211 1111222
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+.+|...++++.+|+.+|+..||++|.|++||
T Consensus 228 -~f~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI 260 (786)
T KOG0588|consen 228 -VFEMPSNISSEAQDLLRRMLDVDPSTRITTEEI 260 (786)
T ss_pred -cccCCCcCCHHHHHHHHHHhccCccccccHHHH
Confidence 245667888999999999999999999998875
|
|
| >KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-27 Score=237.02 Aligned_cols=178 Identities=27% Similarity=0.417 Sum_probs=141.4
Q ss_pred CcccccccCCccEEEEEEec---CC--cEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 430 SENNLIDRGGIGYVYKRRIH---YG--MEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 430 ~~~~~ig~G~~g~V~~~~~~---~~--~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
...+.||+|.||.||+|.+. .| ..||||.-+.. ..+..+.|..|..+|++++|||||+++|+|.+...-
T Consensus 392 tl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~P~WivmEL 471 (974)
T KOG4257|consen 392 TLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQPMWIVMEL 471 (974)
T ss_pred cHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeeccceeEEEec
Confidence 44578999999999999763 23 35888887763 345578899999999999999999999999875421
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||++|.+..+..+ ..+
T Consensus 472 ~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yY-kaS 550 (974)
T KOG4257|consen 472 APLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYY-KAS 550 (974)
T ss_pred ccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccchhhhccccchh-hcc
Confidence 499999987655433 233
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...-.+.|||||-+.-.+++.++|||-|||.+||+++ |..||.+..-. |-+..-+...+
T Consensus 551 ~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNs--------------------DVI~~iEnGeR 610 (974)
T KOG4257|consen 551 RGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNS--------------------DVIGHIENGER 610 (974)
T ss_pred ccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCcccccccc--------------------ceEEEecCCCC
Confidence 3446778999999999999999999999999999988 99999764221 22222334456
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+.|+.||+.++.++.+||++||.+||.+.|+
T Consensus 611 lP~P~nCPp~LYslmskcWayeP~kRPrftei 642 (974)
T KOG4257|consen 611 LPCPPNCPPALYSLMSKCWAYEPSKRPRFTEI 642 (974)
T ss_pred CCCCCCCChHHHHHHHHHhccCcccCCcHHHH
Confidence 78889999999999999999999999998764
|
|
| >KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-27 Score=233.51 Aligned_cols=190 Identities=23% Similarity=0.394 Sum_probs=148.3
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.......+.||||-||.|..+....+..||||.++... ...++.|.+|+++|.+++|||||+++|+|..++..
T Consensus 537 Rs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EY 616 (807)
T KOG1094|consen 537 RSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEY 616 (807)
T ss_pred hhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHH
Confidence 34455678999999999999999878999999998654 34468899999999999999999999999765532
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
||||++|.+...+.....
T Consensus 617 mEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vq 696 (807)
T KOG1094|consen 617 MENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQ 696 (807)
T ss_pred HhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCcccccccccCCceeee
Confidence 499999987766655556
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhh--CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT--RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt--g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
...+-.++|||||.+.-++++.++|||+|||.+|||++ .+.||.....++ ..+-....++... ..
T Consensus 697 gr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~--vven~~~~~~~~~-----------~~ 763 (807)
T KOG1094|consen 697 GRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQ--VVENAGEFFRDQG-----------RQ 763 (807)
T ss_pred cceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHH--HHHhhhhhcCCCC-----------cc
Confidence 66788999999999999999999999999999999987 567886543221 1111111111111 11
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....|..|+..++++|.+||.+|.++|||++++
T Consensus 764 ~~l~~P~~cp~~lyelml~Cw~~es~~RPsFe~l 797 (807)
T KOG1094|consen 764 VVLSRPPACPQGLYELMLRCWRRESEQRPSFEQL 797 (807)
T ss_pred eeccCCCcCcHHHHHHHHHHhchhhhcCCCHHHH
Confidence 2234566789999999999999999999998764
|
|
| >KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-27 Score=229.56 Aligned_cols=185 Identities=28% Similarity=0.414 Sum_probs=135.0
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCC---c----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD---F---- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~---~---- 497 (628)
..++...+.||+|+||.||++.. .+|...|||.+........+.+.+|+++|++++|||||+.+|.....+ +
T Consensus 16 ~~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~m 95 (313)
T KOG0198|consen 16 ISNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFM 95 (313)
T ss_pred cchhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeee
Confidence 34566778999999999999987 459999999998764333677899999999999999999999411111 0
Q ss_pred ---------------------------------------------------------------cccccccccccccC-cc
Q 037488 498 ---------------------------------------------------------------KADFGMAKPLLKED-QS 513 (628)
Q Consensus 498 ---------------------------------------------------------------~~DFGla~~~~~~~-~~ 513 (628)
.+|||+|+...... ..
T Consensus 96 Ey~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~ 175 (313)
T KOG0198|consen 96 EYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKS 175 (313)
T ss_pred eccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCccccccccccccc
Confidence 04999998765311 11
Q ss_pred cccccccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 514 LIQTQTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.......||+.|||||++..+. .+.++||||+||++.||+||++||.+. .....+.... +.
T Consensus 176 ~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~----~~~~~~~~~i--------------g~ 237 (313)
T KOG0198|consen 176 DSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF----FEEAEALLLI--------------GR 237 (313)
T ss_pred cccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhh----cchHHHHHHH--------------hc
Confidence 1233567999999999999643 345999999999999999999999753 1111111100 00
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+.+|...+.++.+++.+|+++||++||||+++
T Consensus 238 ~~~~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eL 273 (313)
T KOG0198|consen 238 EDSLPEIPDSLSDEAKDFLRKCFKRDPEKRPTAEEL 273 (313)
T ss_pred cCCCCCCCcccCHHHHHHHHHHhhcCcccCcCHHHH
Confidence 111234555678889999999999999999999764
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-28 Score=257.35 Aligned_cols=243 Identities=29% Similarity=0.397 Sum_probs=118.1
Q ss_pred ccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEcc
Q 037488 136 SMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLG 215 (628)
Q Consensus 136 ~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 215 (628)
.+++++++.|++++ +|++++.+.+|+.++..+|++. .+|..+..+.+|+.|.+..|.+. .+|....++++|+.|+|.
T Consensus 242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 34444444444442 2244444555555555555443 34444444444444444444444 333344445555555555
Q ss_pred CCcCcccCCCCccCCCC-CcEEEccCCcCCcCCCCc-cCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCC
Q 037488 216 SNKLSGFVPASFGNLTN-LRSLHLGSNQITSIPSTL-LNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGV 293 (628)
Q Consensus 216 ~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 293 (628)
.|+|...++..+..+.. |+.|+.+.|++..+|..= ..+..|+.|++.+|.++...-..+.+..+|+.|+|++|++...
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 55554332222222211 333333333333333100 0123455566666666554333455666666666666666544
Q ss_pred CccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceec-CCCCCcc
Q 037488 294 IPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGE-IPREGSF 372 (628)
Q Consensus 294 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~-~p~~~~~ 372 (628)
+...+..+..|++|+|+||+++ .+|+.+..+..|++|...+|.+. ..| .+..++.|+.+|+|.|.+... +|.....
T Consensus 399 pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~ 475 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS 475 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence 3344556666666666666665 45566666666666666666555 233 455566666666666655532 2222222
Q ss_pred cccccccccCCC
Q 037488 373 RNFLAESFKGNE 384 (628)
Q Consensus 373 ~~~~~~~~~~~~ 384 (628)
.++....+.||.
T Consensus 476 p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 476 PNLKYLDLSGNT 487 (1081)
T ss_pred cccceeeccCCc
Confidence 444444555544
|
|
| >PHA02988 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-26 Score=230.65 Aligned_cols=171 Identities=21% Similarity=0.300 Sum_probs=127.8
Q ss_pred cccccCCccEEEEEEecCCcEEEEEEeeccch---hHHHHHHHHHHHhhcccCCCcceeeeeccC--CC--cc-------
Q 037488 433 NLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYR---EAFKNFDIECDMMKHIRHRNLIKIISSCSN--DD--FK------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~--~~------- 498 (628)
..||+|++|.||+|.+ +|+.||||+++.... ...+.|.+|++++++++|||||+++|++.+ ++ ..
T Consensus 26 ~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~ 104 (283)
T PHA02988 26 VLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYC 104 (283)
T ss_pred eEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeC
Confidence 5799999999999998 488999999975432 225678899999999999999999998754 11 00
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+++..... ...
T Consensus 105 ~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~-----~~~ 179 (283)
T PHA02988 105 TRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSP-----PFK 179 (283)
T ss_pred CCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEcccchHhhhccc-----ccc
Confidence 388888754322 124
Q ss_pred ccccccccCcccccc--CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 519 TLATIGYMAPEYGRE--GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~--~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
.+||..|+|||++.+ ..|+.++|||||||++|||++|+.||...... .+...... . ...
T Consensus 180 ~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~-----~~~~~i~~------------~--~~~ 240 (283)
T PHA02988 180 NVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTK-----EIYDLIIN------------K--NNS 240 (283)
T ss_pred ccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCHH-----HHHHHHHh------------c--CCC
Confidence 568999999999976 67999999999999999999999999753211 11111000 0 011
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..+..++.++.+++.+||+.||++|||+.||
T Consensus 241 ~~~~~~~~~~l~~li~~cl~~dp~~Rps~~el 272 (283)
T PHA02988 241 LKLPLDCPLEIKCIVEACTSHDSIKRPNIKEI 272 (283)
T ss_pred CCCCCcCcHHHHHHHHHHhcCCcccCcCHHHH
Confidence 12233467789999999999999999999874
|
|
| >KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-28 Score=221.98 Aligned_cols=177 Identities=24% Similarity=0.313 Sum_probs=139.8
Q ss_pred CCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCC-Cc---------
Q 037488 429 FSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSND-DF--------- 497 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-~~--------- 497 (628)
|.+...+|+|+||.||+|.. .+|+.+|||.+... .+.+.+.+|+.+|.+++.|+||+.+|.|... +.
T Consensus 35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~--sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGA 112 (502)
T KOG0574|consen 35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD--TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGA 112 (502)
T ss_pred HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc--chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCC
Confidence 55667899999999999865 78999999998643 3567789999999999999999999854321 10
Q ss_pred ---------------------------------------------------------cccccccccccccCccccccccc
Q 037488 498 ---------------------------------------------------------KADFGMAKPLLKEDQSLIQTQTL 520 (628)
Q Consensus 498 ---------------------------------------------------------~~DFGla~~~~~~~~~~~~~~~~ 520 (628)
.+|||+|..+.... ....+.+
T Consensus 113 GSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTM--AKRNTVI 190 (502)
T KOG0574|consen 113 GSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTM--AKRNTVI 190 (502)
T ss_pred CcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchhhhhhccccchhhhhH--HhhCccc
Confidence 05999998765432 2345678
Q ss_pred ccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhch
Q 037488 521 ATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600 (628)
Q Consensus 521 gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (628)
||+.|||||++..-.|++++||||+|+...||+.|++||.+..+-...+ .+....+..+..|
T Consensus 191 GTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAIF------------------MIPT~PPPTF~KP 252 (502)
T KOG0574|consen 191 GTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAIF------------------MIPTKPPPTFKKP 252 (502)
T ss_pred cCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccceeE------------------eccCCCCCCCCCh
Confidence 9999999999999999999999999999999999999998764422110 0111233445677
Q ss_pred hhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 601 GQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 601 ~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
..++.++-|++..|+.++|++|.|+-+
T Consensus 253 E~WS~~F~DFi~~CLiK~PE~R~TA~~ 279 (502)
T KOG0574|consen 253 EEWSSEFNDFIRSCLIKKPEERKTALR 279 (502)
T ss_pred HhhhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 788999999999999999999998753
|
|
| >KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-27 Score=231.82 Aligned_cols=186 Identities=19% Similarity=0.324 Sum_probs=140.3
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeec--cchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDL--QYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~--~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~---- 498 (628)
...|++.+.||.||.+.||++...+.+.+|+|++.. .+......|..|+..|.++ .|.+||+|++|=..+.+.
T Consensus 360 g~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvm 439 (677)
T KOG0596|consen 360 GREYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVM 439 (677)
T ss_pred cchhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEe
Confidence 456888999999999999999987778899988753 3455677899999999999 499999999985443321
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|..+..+.......
T Consensus 440 E~Gd~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLlVkG~LKLIDFGIA~aI~~DTTsI~kd 519 (677)
T KOG0596|consen 440 ECGDIDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLLVKGRLKLIDFGIANAIQPDTTSIVKD 519 (677)
T ss_pred ecccccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEEEeeeEEeeeechhcccCccccceeec
Confidence 3999999887776666667
Q ss_pred cccccccccCccccccC-----------ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeec
Q 037488 518 QTLATIGYMAPEYGREG-----------RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVD 586 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~-----------~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (628)
+.+||+.||+||.+... +++.++||||+|||||+|+.|++||.... -.|.+ +..+.+
T Consensus 520 sQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~------n~~aK------l~aI~~ 587 (677)
T KOG0596|consen 520 SQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQII------NQIAK------LHAITD 587 (677)
T ss_pred cccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHH------HHHHH------HHhhcC
Confidence 88999999999987532 26789999999999999999999996421 11211 122334
Q ss_pred ccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 587 AHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.-.-.++.... ..+++++|..||++||++|||+.|+
T Consensus 588 P~~~Iefp~~~~-----~~~li~~mK~CL~rdPkkR~si~eL 624 (677)
T KOG0596|consen 588 PNHEIEFPDIPE-----NDELIDVMKCCLARDPKKRWSIPEL 624 (677)
T ss_pred CCccccccCCCC-----chHHHHHHHHHHhcCcccCCCcHHH
Confidence 422112211111 2238999999999999999998874
|
|
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-26 Score=234.04 Aligned_cols=179 Identities=19% Similarity=0.249 Sum_probs=141.5
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 498 (628)
...++|...+++|+|+||+|+++.. .+++.+|||++++.. .+..+....|.+|+... +||.+++++..+...+..
T Consensus 365 ~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l 444 (694)
T KOG0694|consen 365 LTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHL 444 (694)
T ss_pred ccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeE
Confidence 3456788899999999999999987 678999999998653 44567788899988877 599999998766543211
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
||||+++.....+
T Consensus 445 ~fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g-- 522 (694)
T KOG0694|consen 445 FFVMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQG-- 522 (694)
T ss_pred EEEEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEecccccccccCCCC--
Confidence 5999999754222
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
..++++|||+.|||||++.+..|+..+|.|||||+||||+.|++||.+...+ +++|.++..+
T Consensus 523 ~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEe-----------------e~FdsI~~d~- 584 (694)
T KOG0694|consen 523 DRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEE-----------------EVFDSIVNDE- 584 (694)
T ss_pred CccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHH-----------------HHHHHHhcCC-
Confidence 2457889999999999999999999999999999999999999999753221 2333333222
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
...|..++.++++++.+.+.++|++|--+
T Consensus 585 ---~~yP~~ls~ea~~il~~ll~k~p~kRLG~ 613 (694)
T KOG0694|consen 585 ---VRYPRFLSKEAIAIMRRLLRKNPEKRLGS 613 (694)
T ss_pred ---CCCCCcccHHHHHHHHHHhccCcccccCC
Confidence 23455678899999999999999999876
|
|
| >KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-26 Score=227.68 Aligned_cols=179 Identities=22% Similarity=0.335 Sum_probs=142.1
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchh--HHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYRE--AFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
.+-|...+.||+|.|.+|-.|+. .+|..||||++++...+ ....+.+|++.|+-++|||||+||++...+...
T Consensus 17 AGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiL 96 (864)
T KOG4717|consen 17 AGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLIL 96 (864)
T ss_pred eeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEE
Confidence 34577789999999999999986 78999999999875432 345788999999999999999999986532211
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
.|||++..+.+...
T Consensus 97 ELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~k-- 174 (864)
T KOG4717|consen 97 ELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKK-- 174 (864)
T ss_pred EecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCceEeeeccccccCCCcch--
Confidence 39999988766543
Q ss_pred ccccccccccccCccccccCccC-cccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVS-TNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~-~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
.++.||++.|-|||++.|..|+ +++||||+|||||.++.|++||++....+ ++. .++|-
T Consensus 175 -L~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSE-TLT------------mImDC------ 234 (864)
T KOG4717|consen 175 -LTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSE-TLT------------MIMDC------ 234 (864)
T ss_pred -hhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchh-hhh------------hhhcc------
Confidence 3678999999999999999997 57899999999999999999998643322 121 12221
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+..|.-.+.++.+||..||++||++|.+.+||
T Consensus 235 --KYtvPshvS~eCrdLI~sMLvRdPkkRAslEeI 267 (864)
T KOG4717|consen 235 --KYTVPSHVSKECRDLIQSMLVRDPKKRASLEEI 267 (864)
T ss_pred --cccCchhhhHHHHHHHHHHHhcCchhhccHHHH
Confidence 134556678899999999999999999998764
|
|
| >KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-26 Score=231.28 Aligned_cols=177 Identities=27% Similarity=0.357 Sum_probs=136.8
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
..-|.+++.||.|+||.||-|+. .+.+.||||++... ..+.|..+.+||+.|++++|||+|...|+|..+..-
T Consensus 25 Eklf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLV 104 (948)
T KOG0577|consen 25 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLV 104 (948)
T ss_pred HHHHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHH
Confidence 34577888999999999999997 67889999999753 456689999999999999999999998876543210
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||-|....+.
T Consensus 105 MEYClGSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PA----- 179 (948)
T KOG0577|consen 105 MEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAPA----- 179 (948)
T ss_pred HHHHhccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeeeccccchhhcCch-----
Confidence 499998865433
Q ss_pred cccccccccccCccccc---cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 516 QTQTLATIGYMAPEYGR---EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~---~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.+++||++|||||++. .|.|+-|+||||+||.+.|++.+++|+..+..-. .+-+++.. -.|.+
T Consensus 180 -nsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMS-ALYHIAQN---------esPtL--- 245 (948)
T KOG0577|consen 180 -NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYHIAQN---------ESPTL--- 245 (948)
T ss_pred -hcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHHH-HHHHHHhc---------CCCCC---
Confidence 6789999999999975 5789999999999999999999999986542111 01111100 00111
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
...+++..+..++..||++-|.+|||..+
T Consensus 246 ------qs~eWS~~F~~Fvd~CLqKipqeRptse~ 274 (948)
T KOG0577|consen 246 ------QSNEWSDYFRNFVDSCLQKIPQERPTSEE 274 (948)
T ss_pred ------CCchhHHHHHHHHHHHHhhCcccCCcHHH
Confidence 12357888999999999999999999754
|
|
| >KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-27 Score=242.61 Aligned_cols=179 Identities=21% Similarity=0.383 Sum_probs=140.1
Q ss_pred CcccccccCCccEEEEEEec----CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 430 SENNLIDRGGIGYVYKRRIH----YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 430 ~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.+.++||.|.||.||+|+++ ....||||.++... ++++..|..|+.||.+.+||||++|-|+.+.....
T Consensus 632 ~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTEy 711 (996)
T KOG0196|consen 632 KIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITEY 711 (996)
T ss_pred EEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEhhh
Confidence 46789999999999999873 24579999998764 55678899999999999999999999987543211
Q ss_pred -------------------------------------------------------------ccccccccccccCccc-cc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSL-IQ 516 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~-~~ 516 (628)
+|||++|.+.++.... ..
T Consensus 712 MENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~~~ytt 791 (996)
T KOG0196|consen 712 MENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTT 791 (996)
T ss_pred hhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccceEEEeccccceeecccCCCccccc
Confidence 4999999775544211 11
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
.+.--..+|.|||.+...+++.++|||||||||||.++ |+.||.++.-.+ ++.. -..+.
T Consensus 792 ~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQd-----------------VIka---Ie~gy 851 (996)
T KOG0196|consen 792 LGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQD-----------------VIKA---IEQGY 851 (996)
T ss_pred cCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccchHH-----------------HHHH---HHhcc
Confidence 11224578999999999999999999999999999988 999997753221 1111 12345
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.+.|.+||..+++||..||++|-.+||++.||
T Consensus 852 RLPpPmDCP~aL~qLMldCWqkdR~~RP~F~qi 884 (996)
T KOG0196|consen 852 RLPPPMDCPAALYQLMLDCWQKDRNRRPKFAQI 884 (996)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhcCCCHHHH
Confidence 667788999999999999999999999998764
|
|
| >cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4 | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-26 Score=226.27 Aligned_cols=178 Identities=16% Similarity=0.242 Sum_probs=130.9
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.|...+.||+|+||.||+|.. .+|+.||||++.... ......+.+|++++++++|+||+++++++.+++..
T Consensus 1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e 80 (285)
T cd05631 1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLT 80 (285)
T ss_pred CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEE
Confidence 367788999999999999986 679999999986532 22334678999999999999999998876543211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++...... .
T Consensus 81 ~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~---~ 157 (285)
T cd05631 81 IMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGE---T 157 (285)
T ss_pred ecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCC---e
Confidence 3999998653221 1
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
....+||..|||||++.+..|+.++||||+||++|||++|+.||....... ...... .... . .
T Consensus 158 ~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~-~~~~~~-~~~~-------~--------~ 220 (285)
T cd05631 158 VRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERV-KREEVD-RRVK-------E--------D 220 (285)
T ss_pred ecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcch-hHHHHH-HHhh-------c--------c
Confidence 234579999999999999999999999999999999999999997532211 011110 0000 0 0
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
....+...+.++.+|+.+||+.||++||++
T Consensus 221 ~~~~~~~~s~~~~~li~~~l~~~P~~R~~~ 250 (285)
T cd05631 221 QEEYSEKFSEDAKSICRMLLTKNPKERLGC 250 (285)
T ss_pred cccCCccCCHHHHHHHHHHhhcCHHHhcCC
Confidence 011222346679999999999999999984
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i |
| >KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-26 Score=217.78 Aligned_cols=191 Identities=23% Similarity=0.254 Sum_probs=134.5
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCC---cc-----
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD---FK----- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~---~~----- 498 (628)
.|...+.+|.|+||.||+|.. .+++.||||++..+..- --+|+++|++++|||||+|.-++.... ..
T Consensus 25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~----knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlV 100 (364)
T KOG0658|consen 25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRY----KNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLV 100 (364)
T ss_pred EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCc----CcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHH
Confidence 466678999999999999987 56899999998654331 246999999999999999988764311 10
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
||||-|+.+....
T Consensus 101 leymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~e 180 (364)
T KOG0658|consen 101 LEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGE 180 (364)
T ss_pred HHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccCCcceeeccCC
Confidence 5999999876553
Q ss_pred cccccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc--cceeec--
Q 037488 512 QSLIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS--VMKVVD-- 586 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-- 586 (628)
. ..+...|.+|+|||.+.|. .|+.++||||.|||+.||+-|++-|.+.... ..+...++-.-... ....+.
T Consensus 181 p---niSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~-dQL~eIik~lG~Pt~e~I~~mn~~ 256 (364)
T KOG0658|consen 181 P---NISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSV-DQLVEIIKVLGTPTREDIKSMNPN 256 (364)
T ss_pred C---ceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHH-HHHHHHHHHhCCCCHHHHhhcCcc
Confidence 2 2567899999999998875 5999999999999999999999999774322 22222222111110 000111
Q ss_pred ------ccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 587 ------AHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 587 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
+.+....-. .......++++.+|+.++++++|.+|.++.|
T Consensus 257 y~~~~~p~ik~~~~~-~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~ 302 (364)
T KOG0658|consen 257 YTEFKFPQIKAHPWH-KVFFKRLPPDALDLLSKLLQYSPSKRLSALE 302 (364)
T ss_pred cccccCcccccccce-eecccCCCHHHHHHHHHHhccChhhcCCHHH
Confidence 111110000 0123356788999999999999999998765
|
|
| >KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-26 Score=231.52 Aligned_cols=177 Identities=22% Similarity=0.380 Sum_probs=137.4
Q ss_pred ccccccCCccEEEEEEe--cCCc--EEEEEEeeccchh-HHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--------
Q 037488 432 NNLIDRGGIGYVYKRRI--HYGM--EVAVKVFDLQYRE-AFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 432 ~~~ig~G~~g~V~~~~~--~~~~--~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-------- 498 (628)
.+.||+|.||+|++|.| ..|+ .||||+++..... ....|.+|+.+|.+++|||+|+|||+..+....
T Consensus 115 ~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~qp~mMV~ELapl 194 (1039)
T KOG0199|consen 115 YELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLDQPAMMVFELAPL 194 (1039)
T ss_pred HHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeeccchhhHHhhhccc
Confidence 46899999999999988 3454 5899999765433 457899999999999999999999987653211
Q ss_pred -----------------------------------------------------------ccccccccccccCc-cccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQ-SLIQTQ 518 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~-~~~~~~ 518 (628)
+|||+.|.+..... +.+...
T Consensus 195 GSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~ 274 (1039)
T KOG0199|consen 195 GSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQ 274 (1039)
T ss_pred chHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccceeccCCCCcceEecCC
Confidence 59999998755433 222223
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccch
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHF 597 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (628)
.--...|.|||.+...+++.++|||+|||.+|||+| |+.||.++..-. +.+.+| ...+.
T Consensus 275 rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~q--------------IL~~iD------~~erL 334 (1039)
T KOG0199|consen 275 RKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQ--------------ILKNID------AGERL 334 (1039)
T ss_pred CcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHH--------------HHHhcc------ccccC
Confidence 346778999999999999999999999999999999 789997653211 111122 22345
Q ss_pred hchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 598 VIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 598 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..|..|++++++++..||..+|++|||+..|
T Consensus 335 pRPk~csedIY~imk~cWah~paDRptFsai 365 (1039)
T KOG0199|consen 335 PRPKYCSEDIYQIMKNCWAHNPADRPTFSAI 365 (1039)
T ss_pred CCCCCChHHHHHHHHHhccCCccccccHHHH
Confidence 6778899999999999999999999998653
|
|
| >cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-26 Score=225.59 Aligned_cols=200 Identities=19% Similarity=0.160 Sum_probs=136.6
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
++|...+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|++++++++||||+++++++..++..
T Consensus 1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 80 (287)
T cd07848 1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFE 80 (287)
T ss_pred CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEe
Confidence 3688899999999999999987 568899999997532 23356688999999999999999998877543321
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|+....... ....
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~-~~~~ 159 (287)
T cd07848 81 YVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSN-ANYT 159 (287)
T ss_pred cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCccccccccc-cccc
Confidence 39999986532221 1223
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHh--hcCCcc----------ceee
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVND--LLPISV----------MKVV 585 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~ 585 (628)
...||+.|+|||++.+..++.++||||+||++|||++|++||......+ ........ ..+... ....
T Consensus 160 ~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (287)
T cd07848 160 EYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEID-QLFTIQKVLGPLPAEQMKLFYSNPRFHGLR 238 (287)
T ss_pred ccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhhCCCCHHHHHhhhccchhcccc
Confidence 4579999999999999899999999999999999999999997532211 11111000 000000 0000
Q ss_pred cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+................+.++.+++.+||+.||++|||++|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~ 281 (287)
T cd07848 239 FPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQC 281 (287)
T ss_pred cCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHH
Confidence 0000000000011122356789999999999999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes |
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-27 Score=237.42 Aligned_cols=182 Identities=21% Similarity=0.315 Sum_probs=137.9
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
+.|.+...+|.|+||.||+|.. .++...|.|++.....+....|.-||+||..++||+||+|++.|..+...
T Consensus 32 d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC 111 (1187)
T KOG0579|consen 32 DHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFC 111 (1187)
T ss_pred HHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeec
Confidence 4456667889999999999976 45677888999887778889999999999999999999987744322110
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||++...... .....+
T Consensus 112 ~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t--~qkRDs 189 (1187)
T KOG0579|consen 112 GGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKST--RQKRDS 189 (1187)
T ss_pred CCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEecCcEeeecccccccchhH--Hhhhcc
Confidence 599998754332 234467
Q ss_pred ccccccccCccccc-----cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 519 TLATIGYMAPEYGR-----EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 519 ~~gt~~y~aPE~~~-----~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
++||++|||||+.. ..+|++++||||||+.|.||+-+.+|..+..+-...+ .+. ...
T Consensus 190 FIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVll-----------------Kia-KSe 251 (1187)
T KOG0579|consen 190 FIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLL-----------------KIA-KSE 251 (1187)
T ss_pred ccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHHHHH-----------------HHh-hcC
Confidence 89999999999875 4679999999999999999999999986543311111 111 111
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.....|..++..+.|++.+||.+||+.||++.++
T Consensus 252 PPTLlqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaql 286 (1187)
T KOG0579|consen 252 PPTLLQPSHWSRSFSDFLKRCLVKNPRNRPPAAQL 286 (1187)
T ss_pred CCcccCcchhhhHHHHHHHHHHhcCCccCCCHHHH
Confidence 22233556678889999999999999999998764
|
|
| >KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-26 Score=230.74 Aligned_cols=182 Identities=21% Similarity=0.294 Sum_probs=138.0
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc----ch-hHHHHHHHHHHHhhccc-CCCcceeeeeccCC-
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ----YR-EAFKNFDIECDMMKHIR-HRNLIKIISSCSND- 495 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~----~~-~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~- 495 (628)
...+.|...+.||+|+||.|+.|.. .+|..||+|.++.. .. ...+.+.+|+.+++.++ ||||+++++++...
T Consensus 14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~ 93 (370)
T KOG0583|consen 14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT 93 (370)
T ss_pred cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC
Confidence 4567899999999999999999976 67899999977653 12 23456678999999999 99999998865432
Q ss_pred ------------Ccc------------------------------------------------------ccccccccccc
Q 037488 496 ------------DFK------------------------------------------------------ADFGMAKPLLK 509 (628)
Q Consensus 496 ------------~~~------------------------------------------------------~DFGla~~~~~ 509 (628)
+.. +|||+++...
T Consensus 94 ~~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~- 172 (370)
T KOG0583|consen 94 KIYIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAISP- 172 (370)
T ss_pred eEEEEEEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEeccccccccC-
Confidence 211 4999999763
Q ss_pred cCcccccccccccccccCccccccCc-cC-cccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecc
Q 037488 510 EDQSLIQTQTLATIGYMAPEYGREGR-VS-TNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587 (628)
Q Consensus 510 ~~~~~~~~~~~gt~~y~aPE~~~~~~-~~-~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (628)
.......+.+||+.|+|||++.+.. |+ .++||||+||+||.|++|+.||++. ........
T Consensus 173 -~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~-----~~~~l~~k------------ 234 (370)
T KOG0583|consen 173 -GEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDS-----NVPNLYRK------------ 234 (370)
T ss_pred -CCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCc-----cHHHHHHH------------
Confidence 1123446789999999999999977 85 7899999999999999999999862 11111111
Q ss_pred cccCCcccchhchhhh-HHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLSQEDKHFVIKGQC-VSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~~~~~~~~~~~~~-~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..+ .+..|... +.++.+++.+|+..||.+|+|+.||
T Consensus 235 i~~~----~~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i 272 (370)
T KOG0583|consen 235 IRKG----EFKIPSYLLSPEARSLIEKMLVPDPSTRITLLEI 272 (370)
T ss_pred HhcC----CccCCCCcCCHHHHHHHHHHcCCCcccCCCHHHH
Confidence 1111 12233344 7779999999999999999998764
|
|
| >KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-26 Score=229.24 Aligned_cols=185 Identities=20% Similarity=0.328 Sum_probs=142.6
Q ss_pred HHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCc
Q 037488 423 FQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDF 497 (628)
Q Consensus 423 ~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 497 (628)
.....+|...+.||+|+|++|++|+. .+++.+|||++.+.. ....+...+|-.+|.+| .||.||+|+-.|.++..
T Consensus 69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s 148 (604)
T KOG0592|consen 69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES 148 (604)
T ss_pred cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence 56678899999999999999999986 779999999996532 23345677899999999 89999999877665432
Q ss_pred c------------------------------------------------------------------ccccccccccccC
Q 037488 498 K------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 498 ~------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
. +|||-|+.+.+..
T Consensus 149 LYFvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~ 228 (604)
T KOG0592|consen 149 LYFVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQ 228 (604)
T ss_pred eEEEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeeccccccCChhh
Confidence 1 3999999874322
Q ss_pred cc---------cc--cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc
Q 037488 512 QS---------LI--QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS 580 (628)
Q Consensus 512 ~~---------~~--~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~ 580 (628)
.. .. ..++|||..|.+||++..+..++.+|+|+|||++|+|+.|++||.+..+ -.
T Consensus 229 ~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~Ne-yl------------- 294 (604)
T KOG0592|consen 229 KSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANE-YL------------- 294 (604)
T ss_pred ccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccH-HH-------------
Confidence 11 11 2558999999999999999999999999999999999999999976321 01
Q ss_pred cceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 581 VMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
++.+++..+ +..|...++.+.+|+.+.|..||.+|+|+.||
T Consensus 295 ---iFqkI~~l~----y~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qI 335 (604)
T KOG0592|consen 295 ---IFQKIQALD----YEFPEGFPEDARDLIKKLLVRDPSDRLTSQQI 335 (604)
T ss_pred ---HHHHHHHhc----ccCCCCCCHHHHHHHHHHHccCccccccHHHH
Confidence 112222222 23344556779999999999999999998764
|
|
| >KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-26 Score=232.19 Aligned_cols=177 Identities=24% Similarity=0.379 Sum_probs=131.8
Q ss_pred CcccccccCCccEEEEEEec--CC---cEEEEEEeec---cchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 430 SENNLIDRGGIGYVYKRRIH--YG---MEVAVKVFDL---QYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 430 ~~~~~ig~G~~g~V~~~~~~--~~---~~vavK~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
...+.||+|+||.||+|++. ++ ..||||..+. ......+.|.+|+++|++++|||||+++|++..+...
T Consensus 160 ~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~iv 239 (474)
T KOG0194|consen 160 ELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLV 239 (474)
T ss_pred cccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEE
Confidence 34488999999999999873 22 2389999875 2356678899999999999999999999988654321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+++.-. ...
T Consensus 240 mEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~---~~~ 316 (474)
T KOG0194|consen 240 MELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGS---QYV 316 (474)
T ss_pred EEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEeCccccccCCc---cee
Confidence 4999998542 111
Q ss_pred ccc-cccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 515 IQT-QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 515 ~~~-~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
... ...-...|+|||.+..+.|+.++|||||||++||+.+ |..||.+.... ....++. .
T Consensus 317 ~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~--~v~~kI~-----------------~ 377 (474)
T KOG0194|consen 317 MKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNY--EVKAKIV-----------------K 377 (474)
T ss_pred eccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHH--HHHHHHH-----------------h
Confidence 112 2236789999999999999999999999999999999 88899764321 1222210 0
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+...+...+.++..++.+||..||++||||.++
T Consensus 378 ~~~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i 413 (474)
T KOG0194|consen 378 NGYRMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTI 413 (474)
T ss_pred cCccCCCCCCCHHHHHHHHHHhccCChhhccCHHHH
Confidence 111223334567789999999999999999999764
|
|
| >cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-25 Score=230.88 Aligned_cols=185 Identities=21% Similarity=0.390 Sum_probs=133.2
Q ss_pred hhcCCCcccccccCCccEEEEEEe------cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCC
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI------HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDD 496 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 496 (628)
..++|...+.||+|+||.||+|.. .+++.||||+++... ....+.+.+|++++.++ +|||||+++++|....
T Consensus 5 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~ 84 (338)
T cd05102 5 PRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPN 84 (338)
T ss_pred chhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCC
Confidence 456788899999999999999964 235689999997532 33456789999999999 8999999998653210
Q ss_pred --------------------------------------------------------------------------------
Q 037488 497 -------------------------------------------------------------------------------- 496 (628)
Q Consensus 497 -------------------------------------------------------------------------------- 496 (628)
T Consensus 85 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (338)
T cd05102 85 GPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETD 164 (338)
T ss_pred CceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhcc
Confidence
Q ss_pred ------c-------------------------------------------cccccccccccccCcccccccccccccccC
Q 037488 497 ------F-------------------------------------------KADFGMAKPLLKEDQSLIQTQTLATIGYMA 527 (628)
Q Consensus 497 ------~-------------------------------------------~~DFGla~~~~~~~~~~~~~~~~gt~~y~a 527 (628)
. .+|||+|+...............+|..|||
T Consensus 165 ~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~a 244 (338)
T cd05102 165 DLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMA 244 (338)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccC
Confidence 0 049999986543322222233457789999
Q ss_pred ccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHH
Q 037488 528 PEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSF 606 (628)
Q Consensus 528 PE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (628)
||++.+..|+.++|||||||++|||++ |+.||....... ....... +. .....+..++.+
T Consensus 245 PE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~-~~~~~~~-----------~~-------~~~~~~~~~~~~ 305 (338)
T cd05102 245 PESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINE-EFCQRLK-----------DG-------TRMRAPENATPE 305 (338)
T ss_pred cHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccH-HHHHHHh-----------cC-------CCCCCCCCCCHH
Confidence 999999999999999999999999997 999997532211 1111000 00 001122345667
Q ss_pred HHHHhhcccCCCcccCCCCCCC
Q 037488 607 VFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 607 ~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.+++.+||+.||++|||+.||
T Consensus 306 l~~li~~cl~~dp~~RPs~~el 327 (338)
T cd05102 306 IYRIMLACWQGDPKERPTFSAL 327 (338)
T ss_pred HHHHHHHHccCChhhCcCHHHH
Confidence 9999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V |
| >cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-25 Score=226.27 Aligned_cols=132 Identities=20% Similarity=0.310 Sum_probs=109.1
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.++|+..+.||+|+||.||+++. .+|..||+|.+.... ....+.+.+|++++++++||||+++++++..++..
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 83 (331)
T cd06649 4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 83 (331)
T ss_pred cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEee
Confidence 46889999999999999999987 578999999987643 33456789999999999999999999876543211
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++..... ..
T Consensus 84 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~ 159 (331)
T cd06649 84 HMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MA 159 (331)
T ss_pred cCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCccccccccc----cc
Confidence 399988765322 12
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDE 561 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~ 561 (628)
....||+.|+|||++.+..++.++|||||||++|||+||+.||..
T Consensus 160 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~ 204 (331)
T cd06649 160 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPP 204 (331)
T ss_pred ccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence 345799999999999999999999999999999999999999964
|
Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-25 Score=229.69 Aligned_cols=199 Identities=20% Similarity=0.230 Sum_probs=132.4
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc------c
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF------K 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------~ 498 (628)
+|...+.||+|+||.||+|.. .+|+.||||+++.. .......+.+|++++++++||||+++++++..... .
T Consensus 1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~ 80 (338)
T cd07859 1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY 80 (338)
T ss_pred CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence 477889999999999999986 57999999998642 22344568899999999999999999886532110 0
Q ss_pred ----------------------------------------------------------------ccccccccccccCc-c
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQ-S 513 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~-~ 513 (628)
+|||+|+....... .
T Consensus 81 lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~ 160 (338)
T cd07859 81 VVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTA 160 (338)
T ss_pred EEEecCCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCccccccccccCcc
Confidence 39999986533221 1
Q ss_pred cccccccccccccCcccccc--CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcc----------
Q 037488 514 LIQTQTLATIGYMAPEYGRE--GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISV---------- 581 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~--~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~---------- 581 (628)
......+||..|+|||++.+ ..++.++|||||||++|||+||++||.+... ......+........
T Consensus 161 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~ 238 (338)
T cd07859 161 IFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNV--VHQLDLITDLLGTPSPETISRVRNE 238 (338)
T ss_pred ccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCCh--HHHHHHHHHHhCCCCHHHHHHhhhh
Confidence 12234579999999999876 6789999999999999999999999965321 111111111110000
Q ss_pred --ceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 582 --MKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 582 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......................+.++.+++.+||+.||++|||++|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~ 287 (338)
T cd07859 239 KARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEA 287 (338)
T ss_pred hHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHH
Confidence 00000000000000000111345678999999999999999998764
|
Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos |
| >KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-26 Score=202.38 Aligned_cols=178 Identities=20% Similarity=0.258 Sum_probs=139.5
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|++.+.+|.|.||.||.|+. +++-.||+|++-+.. .....++.||++|-..++||||+++++|+.+....
T Consensus 21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLi 100 (281)
T KOG0580|consen 21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLI 100 (281)
T ss_pred hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEE
Confidence 46789999999999999999986 678899999986532 23356788999999999999999999998664321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||-+.... .
T Consensus 101 lEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p-~--- 176 (281)
T KOG0580|consen 101 LEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP-S--- 176 (281)
T ss_pred EEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCCCeeccCCCceeecC-C---
Confidence 4999876432 1
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
....+.|||..|.|||+..+..++..+|+|++||..||++.|.+||.... .+....+..+.
T Consensus 177 ~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~-~~etYkrI~k~------------------ 237 (281)
T KOG0580|consen 177 NKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQS-HSETYKRIRKV------------------ 237 (281)
T ss_pred CCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhh-hHHHHHHHHHc------------------
Confidence 23467899999999999999999999999999999999999999998654 22223222211
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+...|...+..+.|+|.+|+..+|.+|.+..|+
T Consensus 238 --~~~~p~~is~~a~dlI~~ll~~~p~~r~~l~~v 270 (281)
T KOG0580|consen 238 --DLKFPSTISGGAADLISRLLVKNPIERLALTEV 270 (281)
T ss_pred --cccCCcccChhHHHHHHHHhccCccccccHHHH
Confidence 112234456779999999999999999987653
|
|
| >KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-25 Score=226.26 Aligned_cols=184 Identities=22% Similarity=0.229 Sum_probs=146.8
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch---hHHHHHHHHHHHhhccc-CCCcceeeeeccCCCcc-
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR---EAFKNFDIECDMMKHIR-HRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~- 498 (628)
....|+..+.||.|.||+||+++. .+|+.+|+|++..... .....+.+|+++|+++. |||||+++++++..+..
T Consensus 33 ~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~ 112 (382)
T KOG0032|consen 33 IKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVY 112 (382)
T ss_pred ccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEE
Confidence 356678889999999999999987 5699999999976433 23467899999999998 99999999987654321
Q ss_pred --------------------------------------------------------------------cccccccccccc
Q 037488 499 --------------------------------------------------------------------ADFGMAKPLLKE 510 (628)
Q Consensus 499 --------------------------------------------------------------------~DFGla~~~~~~ 510 (628)
+|||+|.....
T Consensus 113 lvmEL~~GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~- 191 (382)
T KOG0032|consen 113 LVMELCEGGELFDRIVKKHYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKP- 191 (382)
T ss_pred EEEEecCCchHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccC-
Confidence 39999997654
Q ss_pred CcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 511 DQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 511 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
.......+||++|+|||++.+..|+..+||||.||++|.|++|.+||.+...... .. ....
T Consensus 192 --~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~-~~----------------~i~~ 252 (382)
T KOG0032|consen 192 --GERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEI-FL----------------AILR 252 (382)
T ss_pred --CceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHH-HH----------------HHHc
Confidence 2334677999999999999999999999999999999999999999976432221 11 2223
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+......+.++..+..+++++.+|+..||.+|+|+.++
T Consensus 253 ~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~ 290 (382)
T KOG0032|consen 253 GDFDFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQA 290 (382)
T ss_pred CCCCCCCCCccccCHHHHHHHHHhcccCcccCCCHHHH
Confidence 33344555667778899999999999999999998753
|
|
| >KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-26 Score=223.74 Aligned_cols=183 Identities=20% Similarity=0.286 Sum_probs=137.6
Q ss_pred HHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc
Q 037488 422 LFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF 497 (628)
Q Consensus 422 l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 497 (628)
.....++|+.+..||+|+||.||.|+. .+|..+|+|++++.. ..+.+....|-.+|...++|.||+|+-.|.+.+.
T Consensus 136 ~r~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~ 215 (550)
T KOG0605|consen 136 TRLSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEY 215 (550)
T ss_pred ccCCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCe
Confidence 345678999999999999999999986 679999999998653 4456778889999999999999999988776553
Q ss_pred c------------------------------------------------------------------ccccccccccccC
Q 037488 498 K------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 498 ~------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
. +|||+++.+....
T Consensus 216 LYLiMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~ 295 (550)
T KOG0605|consen 216 LYLIMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKH 295 (550)
T ss_pred eEEEEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeeccccccchhhhhh
Confidence 2 3999996542100
Q ss_pred ---------------------ccc------------------------ccccccccccccCccccccCccCcccchhhHh
Q 037488 512 ---------------------QSL------------------------IQTQTLATIGYMAPEYGREGRVSTNGDVYSFG 546 (628)
Q Consensus 512 ---------------------~~~------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~G 546 (628)
... ..-+.+|||.|||||++.+..|+..+|.||+|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG 375 (550)
T KOG0605|consen 296 RIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLG 375 (550)
T ss_pred hhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHH
Confidence 000 01135699999999999999999999999999
Q ss_pred HHHHHHhhCCCCCCcccCCCcc--HHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCC
Q 037488 547 IMLIETFTRKKPTDEIFSGEMT--LKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 547 vvl~e~ltg~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
||+|||+.|-+||....+.+.. +..|... + .++....++.++.|||.+|+. ||++|.-
T Consensus 376 ~ImyEmLvGyPPF~s~tp~~T~rkI~nwr~~-------------l------~fP~~~~~s~eA~DLI~rll~-d~~~RLG 435 (550)
T KOG0605|consen 376 CIMYEMLVGYPPFCSETPQETYRKIVNWRET-------------L------KFPEEVDLSDEAKDLITRLLC-DPENRLG 435 (550)
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHhhh-------------c------cCCCcCcccHHHHHHHHHHhc-CHHHhcC
Confidence 9999999999999765443211 1111100 0 011112345779999999999 9999975
|
|
| >cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-25 Score=221.54 Aligned_cols=199 Identities=19% Similarity=0.174 Sum_probs=135.2
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.++|...+.||+|+||.||+|+. .+++.||+|+++... ......+.+|++++++++||||+++++++..++..
T Consensus 4 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 83 (288)
T cd07871 4 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFE 83 (288)
T ss_pred cccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEe
Confidence 35788899999999999999987 578999999997543 22345678999999999999999999876543211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++....... ...
T Consensus 84 ~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~--~~~ 161 (288)
T cd07871 84 YLDSDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTK--TYS 161 (288)
T ss_pred CCCcCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCcceeeccCCCc--ccc
Confidence 49999986432221 123
Q ss_pred cccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC----ccceeecc-----
Q 037488 518 QTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI----SVMKVVDA----- 587 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----- 587 (628)
...||+.|+|||++.+ ..++.++||||+||++|||+||++||......+ .+.... ...+. .+..+.+.
T Consensus 162 ~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 239 (288)
T cd07871 162 NEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKE-ELHLIF-RLLGTPTEETWPGITSNEEFRS 239 (288)
T ss_pred CceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHH-HHhCCCChHHhhccccchhhhc
Confidence 4578999999999875 568999999999999999999999997532211 111111 11110 01111000
Q ss_pred cccCCc--ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLSQE--DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~~~--~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...... ..........+.++++++.+|++.||++|||++|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~ 282 (288)
T cd07871 240 YLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAA 282 (288)
T ss_pred cccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHH
Confidence 000000 00011112346678999999999999999999864
|
Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament |
| >cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-25 Score=224.93 Aligned_cols=172 Identities=19% Similarity=0.216 Sum_probs=129.9
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|...+.||+|+||.||+|.. .+|+.||+|++.... ....+.+.+|++++++++||||+++++++.++...
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 80 (291)
T cd05612 1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM 80 (291)
T ss_pred CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence 3688889999999999999987 578999999997532 23456688999999999999999998766543211
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++..... .
T Consensus 81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~-----~ 155 (291)
T cd05612 81 EYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDR-----T 155 (291)
T ss_pred eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchhccCC-----c
Confidence 399999865322 1
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......... ..
T Consensus 156 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~-----~~~~~~i~~------------~~---- 214 (291)
T cd05612 156 WTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNP-----FGIYEKILA------------GK---- 214 (291)
T ss_pred ccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHh------------CC----
Confidence 245799999999999998999999999999999999999999965321 111111000 00
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
...+...+..+.+++.+||+.||.+||+
T Consensus 215 ~~~~~~~~~~~~~li~~~l~~dp~~R~~ 242 (291)
T cd05612 215 LEFPRHLDLYAKDLIKKLLVVDRTRRLG 242 (291)
T ss_pred cCCCccCCHHHHHHHHHHcCCCHHHccC
Confidence 1112233556899999999999999996
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt |
| >PLN00034 mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-25 Score=228.45 Aligned_cols=183 Identities=20% Similarity=0.247 Sum_probs=131.0
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.+|+..+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|+++++.++|+||+++++++..++..
T Consensus 74 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 153 (353)
T PLN00034 74 SELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEF 153 (353)
T ss_pred HHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEec
Confidence 3455668899999999999987 579999999996543 33456789999999999999999999876543211
Q ss_pred --------------------------------------------------------ccccccccccccCccccccccccc
Q 037488 499 --------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLAT 522 (628)
Q Consensus 499 --------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt 522 (628)
+|||+++....... .....+||
T Consensus 154 ~~~~~L~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt 231 (353)
T PLN00034 154 MDGGSLEGTHIADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMD--PCNSSVGT 231 (353)
T ss_pred CCCCcccccccCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccceecccccc--cccccccC
Confidence 49999986533211 12345799
Q ss_pred ccccCcccccc-----CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccch
Q 037488 523 IGYMAPEYGRE-----GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHF 597 (628)
Q Consensus 523 ~~y~aPE~~~~-----~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (628)
..|+|||++.. ..++.++|||||||++|||++|+.||..... ........... . ....
T Consensus 232 ~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~--~~~~~~~~~~~------------~---~~~~ 294 (353)
T PLN00034 232 IAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQ--GDWASLMCAIC------------M---SQPP 294 (353)
T ss_pred ccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCC--ccHHHHHHHHh------------c---cCCC
Confidence 99999998743 2345799999999999999999999973221 11111111100 0 0011
Q ss_pred hchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 598 VIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 598 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+..++.++++++.+||+.||++|||+.|+
T Consensus 295 ~~~~~~~~~l~~li~~~l~~~P~~Rpt~~el 325 (353)
T PLN00034 295 EAPATASREFRHFISCCLQREPAKRWSAMQL 325 (353)
T ss_pred CCCCccCHHHHHHHHHHccCChhhCcCHHHH
Confidence 1223456679999999999999999998764
|
|
| >KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-26 Score=205.84 Aligned_cols=186 Identities=18% Similarity=0.239 Sum_probs=137.1
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
..+|.+.+.+|+|||+.||.++. .++..+|+|++.....++.+...+|++..++++||||+++++++..+...
T Consensus 20 ~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~y 99 (302)
T KOG2345|consen 20 NKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAY 99 (302)
T ss_pred CceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEE
Confidence 45788889999999999999984 78999999999988777888899999999999999999998876432110
Q ss_pred -----------------------------------------------------------------------ccccccccc
Q 037488 499 -----------------------------------------------------------------------ADFGMAKPL 507 (628)
Q Consensus 499 -----------------------------------------------------------------------~DFGla~~~ 507 (628)
.|||-++..
T Consensus 100 ll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a 179 (302)
T KOG2345|consen 100 LLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSATQA 179 (302)
T ss_pred EEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEeccCcccc
Confidence 288888754
Q ss_pred cccCcc-------cccccccccccccCcccccc---CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhc
Q 037488 508 LKEDQS-------LIQTQTLATIGYMAPEYGRE---GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL 577 (628)
Q Consensus 508 ~~~~~~-------~~~~~~~gt~~y~aPE~~~~---~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~ 577 (628)
.-.-.. +.......|..|+|||.+.- ...++++||||+||++|+|+.|..||+.....+..++
T Consensus 180 ~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSla------- 252 (302)
T KOG2345|consen 180 PIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLA------- 252 (302)
T ss_pred ceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEE-------
Confidence 211100 11122347899999999863 4578999999999999999999999986544332211
Q ss_pred CCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 578 PISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+..+.+. .+.....+..+.+++..|++.||.+||++.++
T Consensus 253 ----LAv~n~q~s------~P~~~~yse~l~~lik~mlqvdP~qRP~i~~l 293 (302)
T KOG2345|consen 253 ----LAVQNAQIS------IPNSSRYSEALHQLIKSMLQVDPNQRPTIPEL 293 (302)
T ss_pred ----Eeeeccccc------cCCCCCccHHHHHHHHHHhcCCcccCCCHHHH
Confidence 112222111 11112257789999999999999999998763
|
|
| >PTZ00036 glycogen synthase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-25 Score=235.28 Aligned_cols=196 Identities=22% Similarity=0.233 Sum_probs=132.1
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCC-------
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD------- 496 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------- 496 (628)
...+|...+.||+|+||.||+|.. .+++.||||++.... ....+|+.+++.++|||||++++++....
T Consensus 64 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~ 139 (440)
T PTZ00036 64 PNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKN 139 (440)
T ss_pred cCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCc
Confidence 356799999999999999999987 578999999985432 22357999999999999999876542100
Q ss_pred -c----------------------------------------------------------------------cccccccc
Q 037488 497 -F----------------------------------------------------------------------KADFGMAK 505 (628)
Q Consensus 497 -~----------------------------------------------------------------------~~DFGla~ 505 (628)
. .+|||+|+
T Consensus 140 ~~l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFGla~ 219 (440)
T PTZ00036 140 IFLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAK 219 (440)
T ss_pred eEEEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeeccccch
Confidence 0 04999998
Q ss_pred cccccCcccccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc--cc
Q 037488 506 PLLKEDQSLIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS--VM 582 (628)
Q Consensus 506 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~--~~ 582 (628)
.+..... ....+||++|||||++.+. .|+.++||||+||++|||++|++||.+....+ .+........... ..
T Consensus 220 ~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~-~~~~i~~~~~~p~~~~~ 295 (440)
T PTZ00036 220 NLLAGQR---SVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVD-QLVRIIQVLGTPTEDQL 295 (440)
T ss_pred hccCCCC---cccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCCHHHH
Confidence 6543321 2346799999999998764 69999999999999999999999997533211 1111111100000 00
Q ss_pred eeecccc-----c--CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 583 KVVDAHL-----L--SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 583 ~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+.. . ...+.....|...+.++++|+.+||++||++|||+.|+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~ 348 (440)
T PTZ00036 296 KEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEA 348 (440)
T ss_pred HHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHH
Confidence 0000000 0 00001112233456789999999999999999998763
|
|
| >cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-25 Score=224.69 Aligned_cols=190 Identities=23% Similarity=0.357 Sum_probs=132.3
Q ss_pred hcCCCcccccccCCccEEEEEEec-----------------CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcce
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH-----------------YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIK 487 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~-----------------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~ 487 (628)
.++|...+.||+|+||.||+|.+. ++..||+|.+.... ......|.+|++++++++||||++
T Consensus 4 ~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 83 (304)
T cd05096 4 RGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIR 83 (304)
T ss_pred hhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeE
Confidence 357888899999999999999752 23479999987543 334567899999999999999999
Q ss_pred eeeeccCCCc----------------------------------------------------------------------
Q 037488 488 IISSCSNDDF---------------------------------------------------------------------- 497 (628)
Q Consensus 488 l~~~~~~~~~---------------------------------------------------------------------- 497 (628)
+++++.+.+.
T Consensus 84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH~d 163 (304)
T cd05096 84 LLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRD 163 (304)
T ss_pred EEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccccC
Confidence 9986532110
Q ss_pred ---------------cccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh--CCCCCC
Q 037488 498 ---------------KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT--RKKPTD 560 (628)
Q Consensus 498 ---------------~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt--g~~p~~ 560 (628)
.+|||+++...............++..|||||++.++.++.++|||||||++|||++ +..||.
T Consensus 164 lkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~ 243 (304)
T cd05096 164 LATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYG 243 (304)
T ss_pred cchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCC
Confidence 049999986543322222334457889999999998899999999999999999987 556776
Q ss_pred cccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 561 EIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..... .....+......... ......+..++..+.+++.+||+.||++|||+.||
T Consensus 244 ~~~~~--~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i 298 (304)
T cd05096 244 ELTDE--QVIENAGEFFRDQGR-----------QVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDI 298 (304)
T ss_pred cCCHH--HHHHHHHHHhhhccc-----------cccccCCCCCCHHHHHHHHHHccCCchhCcCHHHH
Confidence 53221 111111111100000 00011223456779999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k |
| >KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-25 Score=205.37 Aligned_cols=173 Identities=21% Similarity=0.239 Sum_probs=137.5
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
..++|+..+.+|.|+||.|..++. .+|..+|+|+++.+. .++.+....|..+|+.+.||.+|++.+.|.+.+..
T Consensus 42 ~l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lym 121 (355)
T KOG0616|consen 42 SLQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYM 121 (355)
T ss_pred chhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEE
Confidence 346788889999999999999987 678999999998653 34566778999999999999999999877664432
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
.|||+|+.+...
T Consensus 122 vmeyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~r---- 197 (355)
T KOG0616|consen 122 VMEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGR---- 197 (355)
T ss_pred EEeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEEecCc----
Confidence 399999976432
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
+.+.|||+.|+|||++.+..|+.++|.|||||++|||+.|.+||.+..+ + .+.++++.++
T Consensus 198 -T~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~----~-------------~iY~KI~~~~-- 257 (355)
T KOG0616|consen 198 -TWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNP----I-------------QIYEKILEGK-- 257 (355)
T ss_pred -EEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCCh----H-------------HHHHHHHhCc--
Confidence 3567999999999999999999999999999999999999999976433 1 1222233222
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERV 623 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp 623 (628)
...|.-.+.++++|+.+.++.|-.+|-
T Consensus 258 --v~fP~~fs~~~kdLl~~LL~vD~t~R~ 284 (355)
T KOG0616|consen 258 --VKFPSYFSSDAKDLLKKLLQVDLTKRF 284 (355)
T ss_pred --ccCCcccCHHHHHHHHHHHhhhhHhhh
Confidence 223444567799999999999999883
|
|
| >PTZ00263 protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-25 Score=226.47 Aligned_cols=174 Identities=16% Similarity=0.207 Sum_probs=131.7
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|...+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|++++++++||||+++++++.+++..
T Consensus 17 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 96 (329)
T PTZ00263 17 LSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFL 96 (329)
T ss_pred chheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEE
Confidence 35688889999999999999987 568999999997532 23356688999999999999999999877543321
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++......
T Consensus 97 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~---- 172 (329)
T PTZ00263 97 LEFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRT---- 172 (329)
T ss_pred EcCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeeccCceEcCCCc----
Confidence 3999998653221
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
....||+.|+|||++.+..++.++|||||||++|||++|+.||.+..+ ......... +
T Consensus 173 -~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~-----~~~~~~i~~------------~---- 230 (329)
T PTZ00263 173 -FTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTP-----FRIYEKILA------------G---- 230 (329)
T ss_pred -ceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCH-----HHHHHHHhc------------C----
Confidence 245799999999999999999999999999999999999999964221 111111100 0
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
....+...+.++.+++.+||+.||++||+.
T Consensus 231 ~~~~p~~~~~~~~~li~~~L~~dP~~R~~~ 260 (329)
T PTZ00263 231 RLKFPNWFDGRARDLVKGLLQTDHTKRLGT 260 (329)
T ss_pred CcCCCCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence 011222345668999999999999999973
|
|
| >KOG0589 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-25 Score=224.40 Aligned_cols=181 Identities=22% Similarity=0.238 Sum_probs=141.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
.++|...+.+|+|+||.++.++. .+++.+++|.+.... ....+.+.+|+.++++++|||||...+.+.+++.
T Consensus 3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Iv 82 (426)
T KOG0589|consen 3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIV 82 (426)
T ss_pred cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEE
Confidence 35788899999999999999876 568899999997543 3445578899999999999999998765443332
Q ss_pred ---------c-------------------------------------------------------ccccccccccccCcc
Q 037488 498 ---------K-------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 498 ---------~-------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
. .|||+|+.+....
T Consensus 83 m~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~-- 160 (426)
T KOG0589|consen 83 MEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPED-- 160 (426)
T ss_pred EeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccCceeecchhhhhhcCCch--
Confidence 1 2999999886654
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
....+.+||+.||.||++.+.+|+.|+||||+||++|||++-+++|.+.. +...+.. +....
T Consensus 161 ~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~-----m~~Li~k------------i~~~~- 222 (426)
T KOG0589|consen 161 SLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASN-----MSELILK------------INRGL- 222 (426)
T ss_pred hhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccc-----hHHHHHH------------Hhhcc-
Confidence 23467789999999999999999999999999999999999999997632 1112211 11111
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+.+...+.++..++..|++.+|+.||++.++
T Consensus 223 --~~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~L 255 (426)
T KOG0589|consen 223 --YSPLPSMYSSELRSLVKSMLRKNPEHRPSALEL 255 (426)
T ss_pred --CCCCCccccHHHHHHHHHHhhcCCccCCCHHHH
Confidence 133455678889999999999999999998764
|
|
| >cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-25 Score=221.97 Aligned_cols=201 Identities=20% Similarity=0.199 Sum_probs=134.0
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch-hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR-EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.++|...+.||+|+||.||+|+. .+++.||||+++.... .....+.+|+++++.++||||+++++++..++..
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 83 (303)
T cd07869 4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFE 83 (303)
T ss_pred cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEE
Confidence 47899999999999999999987 4789999999875432 2234577899999999999999999887543321
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|+...... ....
T Consensus 84 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~--~~~~ 161 (303)
T cd07869 84 YVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPS--HTYS 161 (303)
T ss_pred CCCcCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcceeccCCC--ccCC
Confidence 4999987543221 1223
Q ss_pred cccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC---cccee-----eccc
Q 037488 518 QTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI---SVMKV-----VDAH 588 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~ 588 (628)
...||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.......+.......... .+... ..+.
T Consensus 162 ~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (303)
T cd07869 162 NEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPE 241 (303)
T ss_pred CCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhccccccc
Confidence 4578999999999876 4589999999999999999999999976432111111111110000 00000 0000
Q ss_pred ccC-Ccccchh---chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLS-QEDKHFV---IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~-~~~~~~~---~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
... ..+.... .....+..+.+++.+||+.||++|||+.|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~ 285 (303)
T cd07869 242 RFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAA 285 (303)
T ss_pred cccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHH
Confidence 000 0000000 001124568899999999999999998764
|
Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an |
| >cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-25 Score=223.34 Aligned_cols=169 Identities=18% Similarity=0.198 Sum_probs=126.3
Q ss_pred cccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------------
Q 037488 435 IDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------------ 498 (628)
Q Consensus 435 ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------------ 498 (628)
||+|+||.||+|+. .+++.||+|+++... ......+.+|++++++++|||||++++++..++..
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L 80 (312)
T cd05585 1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL 80 (312)
T ss_pred CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence 69999999999987 568899999997532 33456688999999999999999998877543311
Q ss_pred ------------------------------------------------------ccccccccccccCccccccccccccc
Q 037488 499 ------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLATIG 524 (628)
Q Consensus 499 ------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt~~ 524 (628)
+|||+++...... ......+||+.
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~ 158 (312)
T cd05585 81 FHHLQREGRFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDD--DKTNTFCGTPE 158 (312)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccccCccCC--CccccccCCcc
Confidence 3999998543222 12234579999
Q ss_pred ccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhH
Q 037488 525 YMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCV 604 (628)
Q Consensus 525 y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (628)
|+|||++.+..|+.++||||+||++|||++|+.||.... ........... ....+...+
T Consensus 159 y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~-----~~~~~~~~~~~----------------~~~~~~~~~ 217 (312)
T cd05585 159 YLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDEN-----VNEMYRKILQE----------------PLRFPDGFD 217 (312)
T ss_pred cCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCC-----HHHHHHHHHcC----------------CCCCCCcCC
Confidence 999999999999999999999999999999999996421 11111111110 011223456
Q ss_pred HHHHHHhhcccCCCcccCCCCC
Q 037488 605 SFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 605 ~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
.++.+++.+||+.||++||++.
T Consensus 218 ~~~~~li~~~L~~dp~~R~~~~ 239 (312)
T cd05585 218 RDAKDLLIGLLSRDPTRRLGYN 239 (312)
T ss_pred HHHHHHHHHHcCCCHHHcCCCC
Confidence 6799999999999999998753
|
Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl |
| >cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-25 Score=226.53 Aligned_cols=169 Identities=18% Similarity=0.240 Sum_probs=125.9
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---------- 498 (628)
+.||+|+||.||+|+. .+|+.||||+++... ......+.+|++++++++||||+++++++..++..
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~ 80 (323)
T cd05571 1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG 80 (323)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence 3689999999999987 679999999997532 23345678899999999999999998876543321
Q ss_pred --------------------------------------------------------ccccccccccccCccccccccccc
Q 037488 499 --------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLAT 522 (628)
Q Consensus 499 --------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt 522 (628)
+|||+|+....... .....+||
T Consensus 81 ~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~--~~~~~~gt 158 (323)
T cd05571 81 ELFFHLSRERVFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGA--TMKTFCGT 158 (323)
T ss_pred cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCC--cccceecC
Confidence 39999985432221 12345799
Q ss_pred ccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhh
Q 037488 523 IGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQ 602 (628)
Q Consensus 523 ~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (628)
+.|||||++.+..|+.++||||+||++|||++|+.||..... ......... . ....+..
T Consensus 159 ~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~-----~~~~~~~~~------------~----~~~~p~~ 217 (323)
T cd05571 159 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----EKLFELILM------------E----EIRFPRT 217 (323)
T ss_pred ccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCH-----HHHHHHHHc------------C----CCCCCCC
Confidence 999999999999999999999999999999999999964211 111111000 0 0112234
Q ss_pred hHHHHHHHhhcccCCCcccCCC
Q 037488 603 CVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 603 ~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
.+.++.+++.+||+.||++||+
T Consensus 218 ~~~~~~~li~~~L~~dP~~R~~ 239 (323)
T cd05571 218 LSPEAKSLLAGLLKKDPKQRLG 239 (323)
T ss_pred CCHHHHHHHHHHccCCHHHcCC
Confidence 5667999999999999999993
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-27 Score=245.63 Aligned_cols=244 Identities=32% Similarity=0.400 Sum_probs=159.3
Q ss_pred CCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEee
Q 037488 110 KYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLN 189 (628)
Q Consensus 110 ~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 189 (628)
.+|+++++++|+++++ |++++.+. .++.+....|.+ ..+|..+...++|+.|.+..|.+. -+|.....++.|++|+
T Consensus 241 ~nl~~~dis~n~l~~l-p~wi~~~~-nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNL-PEWIGACA-NLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecchhhhhcc-hHHHHhcc-cceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence 5788888888888854 58888776 799999999999 467888889999999999999997 5666778899999999
Q ss_pred cccCcccccCCccccCCCC-CCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCc--CCCCccCCCCCcEEEcCCCCC
Q 037488 190 LEYNQLEGSIPDDLCRLAA-LFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITS--IPSTLLNLKDILYLNLSSNFF 266 (628)
Q Consensus 190 L~~n~l~~~~p~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~l~~n~l 266 (628)
|..|+|...++..+..+.. |+.|..+.|++...+...=..++.|+.|++.+|.++. +| .+.+.++|+.|+|++|++
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hhccccceeeeeeccccc
Confidence 9999998443322322222 5555666666653322222234556666666666653 33 344556666666666666
Q ss_pred cCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhh
Q 037488 267 TGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISL 346 (628)
Q Consensus 267 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 346 (628)
...+...+.++..|+.|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..++.|+.+|++.|+++...-...
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence 6555555666666666666666665 44566666666666666666665 455 45666666666666666653321111
Q ss_pred hcCCCCCEEEccCCc
Q 037488 347 EKLLDLKDINVSFNK 361 (628)
Q Consensus 347 ~~l~~L~~l~l~~N~ 361 (628)
..-++|++||+++|.
T Consensus 473 ~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 473 LPSPNLKYLDLSGNT 487 (1081)
T ss_pred CCCcccceeeccCCc
Confidence 122566666666664
|
|
| >KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-25 Score=210.57 Aligned_cols=199 Identities=24% Similarity=0.245 Sum_probs=137.9
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch--hHHHHHHHHHHHhhcccCCC-cceeeeeccCCCc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR--EAFKNFDIECDMMKHIRHRN-LIKIISSCSNDDF---- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~---- 497 (628)
...|...+.||+|+||+||+|+. .+|+.||+|++..... .......+|+.++++++|+| ||++++++.....
T Consensus 10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~ 89 (323)
T KOG0594|consen 10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGI 89 (323)
T ss_pred HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccccccc
Confidence 34567778899999999999986 7799999999976543 23456789999999999999 9999998865441
Q ss_pred --c---------------------------------------------------------------------cccccccc
Q 037488 498 --K---------------------------------------------------------------------ADFGMAKP 506 (628)
Q Consensus 498 --~---------------------------------------------------------------------~DFGla~~ 506 (628)
. +|||+|+.
T Consensus 90 ~~l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra 169 (323)
T KOG0594|consen 90 GKLYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLARA 169 (323)
T ss_pred ceEEEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchHHH
Confidence 0 59999997
Q ss_pred ccccCcccccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhh-cC--Cccc
Q 037488 507 LLKEDQSLIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDL-LP--ISVM 582 (628)
Q Consensus 507 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~-~~--~~~~ 582 (628)
...... ..+..++|.||+|||++.|. .|++.+||||+||++.||+++++-|.+...-+ .+.+..... .| ..+.
T Consensus 170 ~~ip~~--~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~-ql~~If~~lGtP~e~~Wp 246 (323)
T KOG0594|consen 170 FSIPMR--TYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEID-QLFRIFRLLGTPNEKDWP 246 (323)
T ss_pred hcCCcc--cccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHH-HHHHHHHHcCCCCccCCC
Confidence 643322 24667899999999999987 69999999999999999999999887644311 111111111 11 1111
Q ss_pred eeec-ccccCCcccch------hchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 583 KVVD-AHLLSQEDKHF------VIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 583 ~~~~-~~~~~~~~~~~------~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
.+.. +.....+.... ...+.......+++.+|++++|.+|.|+..
T Consensus 247 ~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~ 298 (323)
T KOG0594|consen 247 GVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKG 298 (323)
T ss_pred CccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHH
Confidence 1110 00000000000 000111247899999999999999999764
|
|
| >cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3 | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-25 Score=225.99 Aligned_cols=135 Identities=22% Similarity=0.229 Sum_probs=110.0
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc---
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--- 497 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--- 497 (628)
...++|...+.||+|+||.||+|.. ..++.||||++... .....+.+.+|+.+++.++||||+++++++.....
T Consensus 14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 93 (355)
T cd07874 14 TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEE 93 (355)
T ss_pred hhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccc
Confidence 4567899999999999999999986 56899999999753 23345677899999999999999999987643210
Q ss_pred ------------------------------------------------------------------cccccccccccccC
Q 037488 498 ------------------------------------------------------------------KADFGMAKPLLKED 511 (628)
Q Consensus 498 ------------------------------------------------------------------~~DFGla~~~~~~~ 511 (628)
.+|||+|+.....
T Consensus 94 ~~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~~- 172 (355)
T cd07874 94 FQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS- 172 (355)
T ss_pred cceeEEEhhhhcccHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEEEeeCcccccCCCc-
Confidence 0499999864322
Q ss_pred cccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCc
Q 037488 512 QSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDE 561 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~ 561 (628)
.......||..|+|||++.+..++.++|||||||++|||++|+.||.+
T Consensus 173 --~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~ 220 (355)
T cd07874 173 --FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPG 220 (355)
T ss_pred --cccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 122345799999999999999999999999999999999999999965
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok |
| >cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.2e-25 Score=225.58 Aligned_cols=136 Identities=22% Similarity=0.232 Sum_probs=110.3
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc---
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--- 497 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--- 497 (628)
...++|...+.||+|+||.||+|.. .+|+.||||++... .......+.+|+.+++.++||||+++++++...+.
T Consensus 18 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 97 (359)
T cd07876 18 TVLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEE 97 (359)
T ss_pred hhhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccc
Confidence 3457899999999999999999987 56899999999643 23345678899999999999999999987643210
Q ss_pred ------------------------------------------------------------------cccccccccccccC
Q 037488 498 ------------------------------------------------------------------KADFGMAKPLLKED 511 (628)
Q Consensus 498 ------------------------------------------------------------------~~DFGla~~~~~~~ 511 (628)
.+|||+|+......
T Consensus 98 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~ 177 (359)
T cd07876 98 FQDVYLVMELMDANLCQVIHMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNF 177 (359)
T ss_pred cceeEEEEeCCCcCHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEecCCCccccccCc
Confidence 03999998543221
Q ss_pred cccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcc
Q 037488 512 QSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEI 562 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~ 562 (628)
......||+.|+|||++.+..++.++||||+||++|||++|+.||.+.
T Consensus 178 ---~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~ 225 (359)
T cd07876 178 ---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGT 225 (359)
T ss_pred ---cCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence 223457999999999999999999999999999999999999999753
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-25 Score=227.11 Aligned_cols=184 Identities=20% Similarity=0.263 Sum_probs=134.6
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|...+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|+++++.++||||+++++++..++..
T Consensus 1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~ 80 (333)
T cd05600 1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM 80 (333)
T ss_pred CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence 4688899999999999999997 568999999997542 23456788999999999999999999877554321
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+.... ..
T Consensus 81 e~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~-----~~ 155 (333)
T cd05600 81 EYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT-----YA 155 (333)
T ss_pred eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCccccc-----cc
Confidence 39999986533 12
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...+||+.|+|||++.+..++.++||||+||++|||++|+.||......+ ...... .. . ....... .
T Consensus 156 ~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~-~~~~i~-~~-~----~~~~~~~------~ 222 (333)
T cd05600 156 NSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNE-TWENLK-YW-K----ETLQRPV------Y 222 (333)
T ss_pred CCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHH-HHHHHH-hc-c----ccccCCC------C
Confidence 45679999999999999999999999999999999999999997532211 011100 00 0 0000000 0
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......++.++.+++.+||..+|++||++.|+
T Consensus 223 ~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~l 254 (333)
T cd05600 223 DDPRFNLSDEAWDLITKLINDPSRRFGSLEDI 254 (333)
T ss_pred CccccccCHHHHHHHHHHhhChhhhcCCHHHH
Confidence 00012346679999999999999999998764
|
Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. |
| >PHA03212 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-25 Score=226.51 Aligned_cols=196 Identities=18% Similarity=0.142 Sum_probs=132.1
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
..+|+..+.||+|+||.||+|.. .+++.||+|+... ..+.+|++++++++|||||++++++..+...
T Consensus 91 ~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~------~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~ 164 (391)
T PHA03212 91 KAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR------GGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPR 164 (391)
T ss_pred cCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh------hhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEec
Confidence 46799999999999999999987 6789999997532 3467899999999999999999876533211
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||+|+....... ......
T Consensus 165 ~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~-~~~~~~ 243 (391)
T PHA03212 165 YKTDLYCYLAAKRNIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINA-NKYYGW 243 (391)
T ss_pred CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCcccccccccc-cccccc
Confidence 49999975322211 122345
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCC------CccHHHHHHhhc--CCccc----eeecc
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSG------EMTLKHWVNDLL--PISVM----KVVDA 587 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~------~~~~~~~~~~~~--~~~~~----~~~~~ 587 (628)
+||+.|+|||++.+..|+.++||||+||++|||+||+.|+...... ...+........ +..+. ...+.
T Consensus 244 ~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~ 323 (391)
T PHA03212 244 AGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDE 323 (391)
T ss_pred cCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHH
Confidence 7999999999999999999999999999999999999886432210 011111111110 00000 00000
Q ss_pred cc-------cCCcccc--hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HL-------LSQEDKH--FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~-------~~~~~~~--~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. ......+ .......+.++.+++.+||+.||++|||+.|+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~el 373 (391)
T PHA03212 324 IYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEAL 373 (391)
T ss_pred HHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHH
Confidence 00 0000000 01112346679999999999999999999874
|
|
| >cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6 | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-25 Score=219.74 Aligned_cols=198 Identities=22% Similarity=0.276 Sum_probs=131.2
Q ss_pred cCCCcccccccCCccEEEEEEe-c-CCcEEEEEEeeccc--hhHHHHHHHHHHHhhcc---cCCCcceeeeeccCC----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-H-YGMEVAVKVFDLQY--REAFKNFDIECDMMKHI---RHRNLIKIISSCSND---- 495 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~~---- 495 (628)
++|...+.||+|+||.||+|+. . +|+.||||+++... ......+.+|+.+++.+ +||||++++++|...
T Consensus 1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~ 80 (290)
T cd07862 1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR 80 (290)
T ss_pred CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCC
Confidence 3688889999999999999986 3 47889999987532 22234566787777665 699999999887411
Q ss_pred -C-c------------------------------------------------------------------cccccccccc
Q 037488 496 -D-F------------------------------------------------------------------KADFGMAKPL 507 (628)
Q Consensus 496 -~-~------------------------------------------------------------------~~DFGla~~~ 507 (628)
. . .+|||+|+..
T Consensus 81 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 160 (290)
T cd07862 81 ETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIY 160 (290)
T ss_pred CCcEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccceEec
Confidence 0 0 0399999865
Q ss_pred cccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhc-C--Cccce-
Q 037488 508 LKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL-P--ISVMK- 583 (628)
Q Consensus 508 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~-~--~~~~~- 583 (628)
... .......||+.|+|||++.+..++.++|||||||++|||++|++||.+....+ .+........ + ..+..
T Consensus 161 ~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~-~~~~i~~~~~~~~~~~~~~~ 236 (290)
T cd07862 161 SFQ---MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVD-QLGKILDVIGLPGEEDWPRD 236 (290)
T ss_pred cCC---cccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHH-HHHHHHHHhCCCChhhchhh
Confidence 332 12244579999999999998899999999999999999999999997643211 1111111110 0 00000
Q ss_pred --eecccccCCcc-cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 584 --VVDAHLLSQED-KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 584 --~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
........... .........+..+.+++.+||+.||++|||+.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~ 284 (290)
T cd07862 237 VALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSA 284 (290)
T ss_pred hcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHH
Confidence 00000000000 0001112456778999999999999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla |
| >cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-25 Score=223.46 Aligned_cols=183 Identities=22% Similarity=0.338 Sum_probs=133.1
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCc----EEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGM----EVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
..+|+..+.||+|+||.||+|++ .+|+ .||+|+++... ....+.+.+|+.+++.++||||++++|+|..+...
T Consensus 6 ~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~~~~ 85 (316)
T cd05108 6 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQL 85 (316)
T ss_pred hhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCCCcee
Confidence 35688999999999999999986 3344 48999986542 34456788999999999999999999987543211
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+........
T Consensus 86 v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~ 165 (316)
T cd05108 86 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKE 165 (316)
T ss_pred eeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEccccccccccCCCcc
Confidence 499999876433222
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.......++..|||||++.+..++.++|||||||++|||++ |+.||.+.... .+..+...
T Consensus 166 ~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~--~~~~~~~~----------------- 226 (316)
T cd05108 166 YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSILEK----------------- 226 (316)
T ss_pred eeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHH--HHHHHHhC-----------------
Confidence 12223345778999999999999999999999999999998 99998653211 11111100
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+..++.++.+++.+||+.||++||++.++
T Consensus 227 -~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l 261 (316)
T cd05108 227 -GERLPQPPICTIDVYMIMVKCWMIDADSRPKFREL 261 (316)
T ss_pred -CCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 00111223456678999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor |
| >PTZ00283 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-25 Score=234.52 Aligned_cols=184 Identities=19% Similarity=0.240 Sum_probs=136.3
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeec---------
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSC--------- 492 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~--------- 492 (628)
..++|...+.||+|+||+||+|+. .+|+.||||+++.. .......+.+|+.++..++|+||+++++.+
T Consensus 30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~ 109 (496)
T PTZ00283 30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPE 109 (496)
T ss_pred cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcc
Confidence 356899999999999999999986 67999999999753 234456788999999999999999865432
Q ss_pred ------------cCCCc---------------------------------------------------------cccccc
Q 037488 493 ------------SNDDF---------------------------------------------------------KADFGM 503 (628)
Q Consensus 493 ------------~~~~~---------------------------------------------------------~~DFGl 503 (628)
..++. .+|||+
T Consensus 110 ~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~~vkL~DFGl 189 (496)
T PTZ00283 110 NVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGF 189 (496)
T ss_pred cceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCCCEEEEeccc
Confidence 11110 049999
Q ss_pred cccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccce
Q 037488 504 AKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMK 583 (628)
Q Consensus 504 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (628)
++.+............+||+.|||||++.+..|+.++|||||||++|||++|+.||.... ...++....
T Consensus 190 s~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~-----~~~~~~~~~------ 258 (496)
T PTZ00283 190 SKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGEN-----MEEVMHKTL------ 258 (496)
T ss_pred CeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC-----HHHHHHHHh------
Confidence 987543322222345679999999999999999999999999999999999999996421 122221111
Q ss_pred eecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 584 VVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.... ...+..++.++.+++.+||+.||++||++.++
T Consensus 259 ------~~~~---~~~~~~~~~~l~~li~~~L~~dP~~RPs~~el 294 (496)
T PTZ00283 259 ------AGRY---DPLPPSISPEMQEIVTALLSSDPKRRPSSSKL 294 (496)
T ss_pred ------cCCC---CCCCCCCCHHHHHHHHHHcccChhhCcCHHHH
Confidence 1110 11233456779999999999999999998763
|
|
| >PTZ00267 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-25 Score=234.77 Aligned_cols=180 Identities=18% Similarity=0.196 Sum_probs=134.7
Q ss_pred CCcccccccCCccEEEEEEe-cC-CcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--------
Q 037488 429 FSENNLIDRGGIGYVYKRRI-HY-GMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-------- 498 (628)
|...+.||+|+||.||+|.. .+ ++.||+|.+..........+.+|+++++.++|||||+++++|..++..
T Consensus 69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~ 148 (478)
T PTZ00267 69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGS 148 (478)
T ss_pred EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECCC
Confidence 78889999999999999976 34 678999987665555556778899999999999999999977543211
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+...........
T Consensus 149 gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~ 228 (478)
T PTZ00267 149 GGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVA 228 (478)
T ss_pred CCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCccccccc
Confidence 399999875433222223
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
.+.+||++|||||++.+..++.++|||||||++|||++|+.||..... ....... ..+..
T Consensus 229 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~-----~~~~~~~------------~~~~~--- 288 (478)
T PTZ00267 229 SSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQ-----REIMQQV------------LYGKY--- 288 (478)
T ss_pred cccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHH------------HhCCC---
Confidence 456799999999999999999999999999999999999999964211 1111111 11110
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..++.++.+++.+||+.||++||++.++
T Consensus 289 ~~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~ 320 (478)
T PTZ00267 289 DPFPCPVSSGMKALLDPLLSKNPALRPTTQQL 320 (478)
T ss_pred CCCCccCCHHHHHHHHHHhccChhhCcCHHHH
Confidence 01122345679999999999999999998653
|
|
| >PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-25 Score=218.32 Aligned_cols=178 Identities=26% Similarity=0.495 Sum_probs=127.5
Q ss_pred cccccccCCccEEEEEEec-----CCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 431 ENNLIDRGGIGYVYKRRIH-----YGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 431 ~~~~ig~G~~g~V~~~~~~-----~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
..+.||+|+||.||+|.+. .+..||||.++.. ..+..+.|.+|++.+++++||||++++|+|...+..
T Consensus 3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~ 82 (259)
T PF07714_consen 3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEY 82 (259)
T ss_dssp EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE-
T ss_pred EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence 3468999999999999875 3678999999653 334478899999999999999999999998743321
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++...........
T Consensus 83 ~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~ 162 (259)
T PF07714_consen 83 CPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKND 162 (259)
T ss_dssp -TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEES
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 389988876322222223
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
....+...|+|||.+.+..++.++||||||+++|||++ |+.||.+... ..+..... ...
T Consensus 163 ~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~-----~~~~~~~~---------------~~~ 222 (259)
T PF07714_consen 163 SSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDN-----EEIIEKLK---------------QGQ 222 (259)
T ss_dssp TTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCH-----HHHHHHHH---------------TTE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccc---------------ccc
Confidence 34568889999999999999999999999999999999 7899865311 11111110 001
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++..+.+++.+||..||++|||+.++
T Consensus 223 ~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i 255 (259)
T PF07714_consen 223 RLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEI 255 (259)
T ss_dssp ETTSBTTSBHHHHHHHHHHT-SSGGGS--HHHH
T ss_pred cceeccchhHHHHHHHHHHcCCChhhCcCHHHH
Confidence 122333456779999999999999999998764
|
Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A .... |
| >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.5e-25 Score=218.31 Aligned_cols=182 Identities=24% Similarity=0.455 Sum_probs=134.0
Q ss_pred cCCCcccccccCCccEEEEEEec-CC-----cEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc--
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIH-YG-----MEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF-- 497 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~-~~-----~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-- 497 (628)
++|...+.||+|+||.||+|... .+ +.||+|.++... ......|.+|++++++++||||+++++++.....
T Consensus 5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T cd05048 5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTC 84 (283)
T ss_pred HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceE
Confidence 46788899999999999999863 22 679999987543 3345678999999999999999999987543110
Q ss_pred --------------------------------------------------------------------------------
Q 037488 498 -------------------------------------------------------------------------------- 497 (628)
Q Consensus 498 -------------------------------------------------------------------------------- 497 (628)
T Consensus 85 ~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~ 164 (283)
T cd05048 85 MLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVK 164 (283)
T ss_pred EEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEcCCCcEE
Confidence
Q ss_pred cccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhh
Q 037488 498 KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDL 576 (628)
Q Consensus 498 ~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~ 576 (628)
.+|||+++...............+++.|||||++.++.++.++|||||||++|||++ |..||.+....+ ....+..
T Consensus 165 L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~--~~~~i~~- 241 (283)
T cd05048 165 ISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQE--VIEMIRS- 241 (283)
T ss_pred ECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHH--HHHHHHc-
Confidence 039999886543332222344568899999999998999999999999999999998 999987533211 1111100
Q ss_pred cCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 577 LPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .....+..++.++.+++.+||+.||++||+++||
T Consensus 242 --------------~---~~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i 276 (283)
T cd05048 242 --------------R---QLLPCPEDCPARVYALMIECWNEIPARRPRFKDI 276 (283)
T ss_pred --------------C---CcCCCcccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 0 0112234567889999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-23 Score=238.23 Aligned_cols=328 Identities=24% Similarity=0.276 Sum_probs=228.7
Q ss_pred CCChhccCCCCCCEEecCccC------------------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCccccc
Q 037488 11 VVPTTIFNVSTLNSLYLQNVQ------------------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGF 72 (628)
Q Consensus 11 ~~p~~~~~l~~L~~L~l~~n~------------------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 72 (628)
+.+.+|.++.+|+.|.+..+. ..+|+.|.+.+|.+. .+|..| ...+|+.|++.+|++..
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~- 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK- 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-
Confidence 345568888888888875542 134778888888775 455555 46788888888888765
Q ss_pred CccccCCCCCCCEEEccCcc-ccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccC
Q 037488 73 IPNTFGNLRNLNRLGLNDNY-LTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGI 151 (628)
Q Consensus 73 ~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~ 151 (628)
.+..+..+++|+.|+|+++. +..++ .++.+++|+.|+|++|.....+|..+..+. .|+.|++++|.....+
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-------~ls~l~~Le~L~L~~c~~L~~lp~si~~L~-~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-------DLSMATNLETLKLSDCSSLVELPSSIQYLN-KLEDLDMSRCENLEIL 697 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-------ccccCCcccEEEecCCCCccccchhhhccC-CCCEEeCCCCCCcCcc
Confidence 35667778888888887764 33332 356678888888888766666777777765 6788888887666666
Q ss_pred CccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCc-------ccCC
Q 037488 152 PEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLS-------GFVP 224 (628)
Q Consensus 152 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-------~~~~ 224 (628)
|..+ ++++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|..+ .+++|+.|++.++... ...+
T Consensus 698 p~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 698 PTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred CCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccch
Confidence 6655 6788888888887665555542 356778888888876 455444 5677777777653321 1122
Q ss_pred CCccCCCCCcEEEccCCc-CCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCC
Q 037488 225 ASFGNLTNLRSLHLGSNQ-ITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKD 303 (628)
Q Consensus 225 ~~~~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 303 (628)
..+...++|+.|+|++|. +..+|.++..+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. ..+
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~n 847 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STN 847 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccc
Confidence 223344678888888875 45688888888888888888875444566554 6788888888887654455543 467
Q ss_pred CCEEeCCCCcCcccCChhhcCCCCCCEEECcC-CcccccCchhhhcCCCCCEEEccCCc
Q 037488 304 LQYLFLEYNRLQGSIPDSIGDLINLKSLDLSN-NNLSGIIPISLEKLLDLKDINVSFNK 361 (628)
Q Consensus 304 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~l~l~~N~ 361 (628)
|+.|+|++|.++ .+|.++..+++|+.|++++ |++. .+|..+..+++|+.++++++.
T Consensus 848 L~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 848 ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 888888888887 6778888888888888877 4454 455566778888888888774
|
syringae 6; Provisional |
| >cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-24 Score=225.73 Aligned_cols=184 Identities=20% Similarity=0.330 Sum_probs=131.3
Q ss_pred hcCCCcccccccCCccEEEEEEe------cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI------HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDF 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 497 (628)
.++|...+.||+|+||.||+|.. .++..||||+++... ....+.+.+|+++++.+ +|||||+++++|..++.
T Consensus 34 ~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~ 113 (375)
T cd05104 34 RNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGP 113 (375)
T ss_pred hHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCc
Confidence 44678889999999999999863 246689999997432 33456788999999999 89999999987642210
Q ss_pred --------------------------------------------------------------------------------
Q 037488 498 -------------------------------------------------------------------------------- 497 (628)
Q Consensus 498 -------------------------------------------------------------------------------- 497 (628)
T Consensus 114 ~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (375)
T cd05104 114 TLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGS 193 (375)
T ss_pred ceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccce
Confidence
Q ss_pred -------------------------------------------------------------cccccccccccccCccccc
Q 037488 498 -------------------------------------------------------------KADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 498 -------------------------------------------------------------~~DFGla~~~~~~~~~~~~ 516 (628)
.+|||+++...........
T Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~ 273 (375)
T cd05104 194 YIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVK 273 (375)
T ss_pred ecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCccceeccCccccccc
Confidence 0499998865433222222
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
....++..|||||++.+..++.++|||||||++|||++ |..||....... ....+.....
T Consensus 274 ~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~-~~~~~~~~~~------------------ 334 (375)
T cd05104 274 GNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDS-KFYKMIKEGY------------------ 334 (375)
T ss_pred CCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchH-HHHHHHHhCc------------------
Confidence 23346778999999999999999999999999999998 888986532211 1111111100
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+...+.++.+++.+||+.||++|||+.||
T Consensus 335 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei 367 (375)
T cd05104 335 RMLSPECAPSEMYDIMKSCWDADPLKRPTFKQI 367 (375)
T ss_pred cCCCCCCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 011122345679999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce |
| >cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-24 Score=220.74 Aligned_cols=176 Identities=18% Similarity=0.236 Sum_probs=126.9
Q ss_pred CCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHh---hcccCCCcceeeeeccCCCcc---
Q 037488 429 FSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMM---KHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l---~~l~h~niv~l~~~~~~~~~~--- 498 (628)
|...+.||+|+||.||+|.. .+|+.||||+++... ....+.+.+|++++ +.++||||+++++++..++..
T Consensus 1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv 80 (324)
T cd05589 1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV 80 (324)
T ss_pred CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence 56778999999999999987 579999999997532 22344566666554 567899999999876543311
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++...... ...
T Consensus 81 ~E~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~--~~~ 158 (324)
T cd05589 81 MEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFG--DRT 158 (324)
T ss_pred EcCCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCccCCCCC--Ccc
Confidence 4999987543222 122
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...+||+.|||||++.+..++.++|||||||++|||++|+.||...... ....... .. .
T Consensus 159 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~-----~~~~~i~------------~~----~ 217 (324)
T cd05589 159 STFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEE-----EVFDSIV------------ND----E 217 (324)
T ss_pred cccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHH-----HHHHHHH------------hC----C
Confidence 3467999999999999999999999999999999999999999653211 1111100 00 0
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
...+...+.++.+++.+||+.||++||++.+
T Consensus 218 ~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~ 248 (324)
T cd05589 218 VRYPRFLSREAISIMRRLLRRNPERRLGSGE 248 (324)
T ss_pred CCCCCCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence 1122334667899999999999999997543
|
Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved |
| >cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-24 Score=221.08 Aligned_cols=132 Identities=20% Similarity=0.327 Sum_probs=108.6
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.++|+..+.||+|+||.||+|.. .+|+.+|+|.+.... ......+.+|++++++++|||||+++++|..++..
T Consensus 4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 83 (333)
T cd06650 4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 83 (333)
T ss_pred hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEe
Confidence 46899999999999999999987 578899999987542 33456789999999999999999999887543311
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++..... ..
T Consensus 84 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~----~~ 159 (333)
T cd06650 84 HMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MA 159 (333)
T ss_pred cCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhh----cc
Confidence 389888754322 12
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDE 561 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~ 561 (628)
....||..|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus 160 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~ 204 (333)
T cd06650 160 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPP 204 (333)
T ss_pred ccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence 345799999999999988999999999999999999999999964
|
Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.5e-27 Score=222.11 Aligned_cols=251 Identities=22% Similarity=0.283 Sum_probs=205.8
Q ss_pred CCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccC-ccccCCCCCCcccccccCCCCC
Q 037488 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND-NYLTSSTPKLNFLSSLSNCKYL 112 (628)
Q Consensus 34 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~~l~~L 112 (628)
+..+++|..|.|+.++|.+|..+++|++|||++|+|+.|-|++|.+|.+|..|.+.+ |+|+.++.+ .|.++..|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~-----~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG-----AFGGLSSL 142 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh-----HhhhHHHH
Confidence 466899999999999999999999999999999999999999999999998887776 999998764 58999999
Q ss_pred cEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCC------------cccccccc
Q 037488 113 KYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLN------------GSIPIALG 180 (628)
Q Consensus 113 ~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~p~~~~ 180 (628)
+-|.+.-|++..+..++|..++ ++..|.+..|.+...--.+|..+.+++.+.+..|... ...|..++
T Consensus 143 qrLllNan~i~Cir~~al~dL~-~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLP-SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhh-hcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 9999999999999999999997 7889999999998766668999999999999988732 12233333
Q ss_pred CCCCCCEeecccCcc-------------------------cccCC-ccccCCCCCCEEEccCCcCcccCCCCccCCCCCc
Q 037488 181 KLQKLQLLNLEYNQL-------------------------EGSIP-DDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLR 234 (628)
Q Consensus 181 ~l~~L~~L~L~~n~l-------------------------~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 234 (628)
..+...-..+.++++ .+..| ..|.++++|+.|+|++|+|+.+-+.+|.....++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 333322222222211 11222 3467889999999999999998888999999999
Q ss_pred EEEccCCcCCcCCC-CccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcC
Q 037488 235 SLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNF 290 (628)
Q Consensus 235 ~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (628)
.|.|..|+|..+.. .|.++..|+.|+|.+|+|+...|..|..+.+|.+|.|-.|.+
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 99999999988754 455788999999999999988999999999999999888765
|
|
| >cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-24 Score=224.31 Aligned_cols=184 Identities=20% Similarity=0.377 Sum_probs=131.0
Q ss_pred hcCCCcccccccCCccEEEEEEe-c-----CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-H-----YGMEVAVKVFDLQY-REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDF 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~-----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 497 (628)
.++|+..+.||+|+||.||+|.. . +++.||||+++... ......+.+|+++++++ +|||||+++++|.....
T Consensus 37 ~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~ 116 (374)
T cd05106 37 RDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGP 116 (374)
T ss_pred HHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCC
Confidence 45788889999999999999874 2 24579999997542 33456788999999999 89999999987543100
Q ss_pred --------------------------------------------------------------------------------
Q 037488 498 -------------------------------------------------------------------------------- 497 (628)
Q Consensus 498 -------------------------------------------------------------------------------- 497 (628)
T Consensus 117 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (374)
T cd05106 117 VLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSD 196 (374)
T ss_pred eEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccccccccc
Confidence
Q ss_pred --------------------------------------------------------cccccccccccccCcccccccccc
Q 037488 498 --------------------------------------------------------KADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 498 --------------------------------------------------------~~DFGla~~~~~~~~~~~~~~~~g 521 (628)
.+|||+++...............+
T Consensus 197 ~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~ 276 (374)
T cd05106 197 SKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARL 276 (374)
T ss_pred ccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCC
Confidence 049999886543322112223346
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhch
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (628)
+..|||||++.+..|+.++|||||||++|||++ |+.||....... ......... .....+
T Consensus 277 ~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~-~~~~~~~~~------------------~~~~~~ 337 (374)
T cd05106 277 PVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNS-KFYKMVKRG------------------YQMSRP 337 (374)
T ss_pred ccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccH-HHHHHHHcc------------------cCccCC
Confidence 778999999998899999999999999999997 999997543221 111111000 001112
Q ss_pred hhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 601 GQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 601 ~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+.++.+++.+||+.||++|||+.+|
T Consensus 338 ~~~~~~l~~li~~cl~~dp~~RPs~~~l 365 (374)
T cd05106 338 DFAPPEIYSIMKMCWNLEPTERPTFSQI 365 (374)
T ss_pred CCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 2235679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti |
| >cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-24 Score=220.54 Aligned_cols=169 Identities=18% Similarity=0.237 Sum_probs=125.2
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---------- 498 (628)
+.||+|+||.||+++. .+|+.||+|+++... ......+.+|++++++++||||+++++++..++..
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~ 80 (323)
T cd05595 1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG 80 (323)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence 4689999999999986 579999999997542 23445678899999999999999998876543211
Q ss_pred --------------------------------------------------------ccccccccccccCccccccccccc
Q 037488 499 --------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLAT 522 (628)
Q Consensus 499 --------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt 522 (628)
+|||+++....... ......||
T Consensus 81 ~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt 158 (323)
T cd05595 81 ELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA--TMKTFCGT 158 (323)
T ss_pred cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCC--ccccccCC
Confidence 49999885432221 12345799
Q ss_pred ccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhh
Q 037488 523 IGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQ 602 (628)
Q Consensus 523 ~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (628)
+.|||||++.++.++.++|||||||++|||++|+.||...... ........ .. ...+..
T Consensus 159 ~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~-----~~~~~~~~------------~~----~~~p~~ 217 (323)
T cd05595 159 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE-----RLFELILM------------EE----IRFPRT 217 (323)
T ss_pred cCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHH-----HHHHHHhc------------CC----CCCCCC
Confidence 9999999999999999999999999999999999999653211 11111000 00 112234
Q ss_pred hHHHHHHHhhcccCCCcccCCC
Q 037488 603 CVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 603 ~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
++.++.+++.+||+.||++||+
T Consensus 218 ~~~~~~~li~~~L~~dP~~R~~ 239 (323)
T cd05595 218 LSPEAKSLLAGLLKKDPKQRLG 239 (323)
T ss_pred CCHHHHHHHHHHccCCHHHhCC
Confidence 5667899999999999999984
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in |
| >cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-24 Score=216.50 Aligned_cols=178 Identities=17% Similarity=0.250 Sum_probs=129.4
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
+|+..+.||+|+||.||++.. .+++.||||++.... ......+.+|++++++++||||+++++++..++..
T Consensus 1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 80 (285)
T cd05605 1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT 80 (285)
T ss_pred CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence 477889999999999999987 578999999997532 22234578899999999999999998876543211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++...... .
T Consensus 81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~---~ 157 (285)
T cd05605 81 LMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGE---T 157 (285)
T ss_pred ccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCceecCCCC---c
Confidence 3999988643221 1
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
....+||+.|||||++.+..++.++||||+||++|||++|+.||....... ....+... .. . .
T Consensus 158 ~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~-~~~~~~~~-~~--------~-------~ 220 (285)
T cd05605 158 IRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKV-KREEVERR-VK--------E-------D 220 (285)
T ss_pred cccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhh-HHHHHHHH-hh--------h-------c
Confidence 134579999999999998899999999999999999999999997532111 11111100 00 0 0
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
....+...+..+.+++.+||+.||++||++
T Consensus 221 ~~~~~~~~~~~~~~li~~~l~~~P~~R~~~ 250 (285)
T cd05605 221 QEEYSEKFSEAARSICRQLLTKDPGFRLGC 250 (285)
T ss_pred ccccCcccCHHHHHHHHHHccCCHHHhcCC
Confidence 011122345668999999999999999943
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, |
| >cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-24 Score=225.66 Aligned_cols=184 Identities=19% Similarity=0.217 Sum_probs=129.4
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.|...+.||+|+||+||+|+. .+++.||||++.... ....+.+.+|++++++++|||||++++++.+++..
T Consensus 2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E 81 (381)
T cd05626 2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD 81 (381)
T ss_pred CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence 578889999999999999987 678999999997532 33456788999999999999999999887654321
Q ss_pred -------------------------------------------------------------ccccccccccccCc-----
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQ----- 512 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~----- 512 (628)
+|||+++.......
T Consensus 82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~ 161 (381)
T cd05626 82 YIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQ 161 (381)
T ss_pred cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCccccccccccccc
Confidence 39999864311000
Q ss_pred ----------------------------------------ccccccccccccccCccccccCccCcccchhhHhHHHHHH
Q 037488 513 ----------------------------------------SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIET 552 (628)
Q Consensus 513 ----------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ 552 (628)
.....+.+||+.|||||++.+..|+.++||||+||++|||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~el 241 (381)
T cd05626 162 KGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEM 241 (381)
T ss_pred ccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHH
Confidence 0011235799999999999998999999999999999999
Q ss_pred hhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhc--ccCCCcccCCCCCCC
Q 037488 553 FTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMK--CTVESPEERVNAKEI 628 (628)
Q Consensus 553 ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--cl~~dp~~Rpt~~ev 628 (628)
+||+.||....+... ..... .. ......+.+...+.++++++.+ |+..+|..||++.|+
T Consensus 242 ltG~~Pf~~~~~~~~-~~~i~------------~~----~~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~ 302 (381)
T cd05626 242 LVGQPPFLAPTPTET-QLKVI------------NW----ENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDI 302 (381)
T ss_pred HhCCCCCcCCCHHHH-HHHHH------------cc----ccccCCCCCCCCCHHHHHHHHHHccCcccccCCCCHHHH
Confidence 999999975322111 00000 00 0000011112345678899988 556666679998764
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po |
| >PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.5e-25 Score=223.20 Aligned_cols=172 Identities=18% Similarity=0.171 Sum_probs=128.7
Q ss_pred hcCCCcccccccCCccEEEEEEec-C-CcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH-Y-GMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~-~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
.++|...+.||+|+||.||+|... . +..||+|++.... ....+.+.+|+++++.++|||||++++++.++...
T Consensus 29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l 108 (340)
T PTZ00426 29 YEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYL 108 (340)
T ss_pred hhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEE
Confidence 356888899999999999999863 3 4689999996532 23456688999999999999999999987654321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+|+.....
T Consensus 109 v~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~---- 184 (340)
T PTZ00426 109 VLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTR---- 184 (340)
T ss_pred EEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEecCCCCeecCCC----
Confidence 399999865322
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
..+.+||+.|||||++.+..++.++||||+||++|||++|+.||....+. ....... . ..
T Consensus 185 -~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~-----~~~~~i~--------~----~~-- 244 (340)
T PTZ00426 185 -TYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPL-----LIYQKIL--------E----GI-- 244 (340)
T ss_pred -cceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHH-----HHHHHHh--------c----CC--
Confidence 13457999999999999988999999999999999999999999753211 1111100 0 00
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERV 623 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp 623 (628)
...+...+..+.+++.+|++.||++|+
T Consensus 245 --~~~p~~~~~~~~~li~~~l~~dp~~R~ 271 (340)
T PTZ00426 245 --IYFPKFLDNNCKHLMKKLLSHDLTKRY 271 (340)
T ss_pred --CCCCCCCCHHHHHHHHHHcccCHHHcC
Confidence 011223456689999999999999996
|
|
| >cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-24 Score=212.68 Aligned_cols=185 Identities=23% Similarity=0.301 Sum_probs=132.7
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.++|+..+.||+|+||.||+|+. .+++.||+|++..........+.+|+.++++++||||+++++++..++..
T Consensus 8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~ 87 (267)
T cd06646 8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEY 87 (267)
T ss_pred hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeC
Confidence 35788999999999999999986 67899999999765444556688999999999999999999876543211
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+++...... .....
T Consensus 88 ~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~--~~~~~ 165 (267)
T cd06646 88 CGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATI--AKRKS 165 (267)
T ss_pred CCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccceeecccc--cccCc
Confidence 3899888653221 11234
Q ss_pred ccccccccCccccc---cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 519 TLATIGYMAPEYGR---EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 519 ~~gt~~y~aPE~~~---~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
..|+..|+|||++. ...++.++|||||||++|||++|+.||....+.... .......... .
T Consensus 166 ~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~-------------~~~~~~~~~~---~ 229 (267)
T cd06646 166 FIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRAL-------------FLMSKSNFQP---P 229 (267)
T ss_pred cccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhh-------------eeeecCCCCC---C
Confidence 56899999999874 345788999999999999999999998643221100 0000000000 0
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
........+.++.+++.+||+.||++|||++++
T Consensus 230 ~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~i 262 (267)
T cd06646 230 KLKDKTKWSSTFHNFVKISLTKNPKKRPTAERL 262 (267)
T ss_pred CCccccccCHHHHHHHHHHhhCChhhCcCHHHH
Confidence 011112345679999999999999999998764
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-24 Score=224.40 Aligned_cols=198 Identities=20% Similarity=0.214 Sum_probs=133.7
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCC-----cc-
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD-----FK- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-----~~- 498 (628)
+|+..+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+++++.++||||+++++++...+ ..
T Consensus 1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 80 (372)
T cd07853 1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY 80 (372)
T ss_pred CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence 477889999999999999987 57999999998643 2334567889999999999999999998775433 00
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+|+....... .
T Consensus 81 lv~e~~~~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~-~ 159 (372)
T cd07853 81 VVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDES-K 159 (372)
T ss_pred EEeeccccCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEeccccceeecccCcc-c
Confidence 39999986533221 1
Q ss_pred ccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc-cce---------
Q 037488 515 IQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS-VMK--------- 583 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~-~~~--------- 583 (628)
.....+||.+|+|||++.+. .|+.++||||+||++|||++|+.||.+..+.. .+.. ........ ...
T Consensus 160 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~-i~~~~g~~~~~~~~~~~~~~~ 237 (372)
T cd07853 160 HMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQ-QLDL-ITDLLGTPSLEAMRSACEGAR 237 (372)
T ss_pred cCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHH-HHHH-HHHHcCCCCHHHHHHhhHHHH
Confidence 22345789999999998874 48999999999999999999999997543211 0111 11100000 000
Q ss_pred -eecccc--cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 584 -VVDAHL--LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 584 -~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+.... ..............+.++.+++.+||+.||++|||+.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~ 285 (372)
T cd07853 238 AHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADA 285 (372)
T ss_pred HHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHH
Confidence 000000 000000001122346678999999999999999998763
|
Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription |
| >cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-24 Score=221.51 Aligned_cols=199 Identities=21% Similarity=0.200 Sum_probs=133.8
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc---
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--- 497 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--- 497 (628)
...++|...+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|++++++++||||+++++++.....
T Consensus 12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 91 (343)
T cd07878 12 EVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIEN 91 (343)
T ss_pred hhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccc
Confidence 4467899999999999999999986 678899999986532 2334567899999999999999999887642110
Q ss_pred -------------------------------------------------------------------ccccccccccccc
Q 037488 498 -------------------------------------------------------------------KADFGMAKPLLKE 510 (628)
Q Consensus 498 -------------------------------------------------------------------~~DFGla~~~~~~ 510 (628)
.+|||+++.....
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 171 (343)
T cd07878 92 FNEVYLVTNLMGADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQADDE 171 (343)
T ss_pred cCcEEEEeecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCccceecCCC
Confidence 0499999865322
Q ss_pred CcccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC--c-cceeec
Q 037488 511 DQSLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI--S-VMKVVD 586 (628)
Q Consensus 511 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~ 586 (628)
....+||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.... ..+..+....... . ...+..
T Consensus 172 -----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 245 (343)
T cd07878 172 -----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYI-DQLKRIMEVVGTPSPEVLKKISS 245 (343)
T ss_pred -----cCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHhCCCCHHHHHhcch
Confidence 234579999999999877 56899999999999999999999999652211 1111111110000 0 000000
Q ss_pred c-------cccCCccc-chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 587 A-------HLLSQEDK-HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 587 ~-------~~~~~~~~-~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .+...... .........+.+.+++.+|++.||++|||+.|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~el 295 (343)
T cd07878 246 EHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEA 295 (343)
T ss_pred hhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 0 00000000 000011234568899999999999999998764
|
Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is |
| >cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-24 Score=212.65 Aligned_cols=183 Identities=21% Similarity=0.286 Sum_probs=133.6
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
+|+..+.||+|+||.||+|.. .+++.||+|++... .....+.+.+|++++++++||||++++++|..++..
T Consensus 2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 81 (279)
T cd06619 2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFM 81 (279)
T ss_pred cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecC
Confidence 577788999999999999986 67899999998654 233456788999999999999999999976543221
Q ss_pred -------------------------------------------------------ccccccccccccCcccccccccccc
Q 037488 499 -------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLATI 523 (628)
Q Consensus 499 -------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt~ 523 (628)
+|||+++..... .....+||.
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~----~~~~~~~~~ 157 (279)
T cd06619 82 DGGSLDVYRKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNS----IAKTYVGTN 157 (279)
T ss_pred CCCChHHhhcCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcceecccc----cccCCCCCh
Confidence 399998765322 123457999
Q ss_pred cccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCcc--HHHHHHhhcCCccceeecccccCCcccchhchh
Q 037488 524 GYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMT--LKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG 601 (628)
Q Consensus 524 ~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (628)
.|+|||++.+..++.++|||||||++|||++|+.||......... ...+........ .+ .....
T Consensus 158 ~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~-----~~---------~~~~~ 223 (279)
T cd06619 158 AYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDED-----PP---------VLPVG 223 (279)
T ss_pred hhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccC-----CC---------CCCCC
Confidence 999999999989999999999999999999999999653322111 111111100000 00 00111
Q ss_pred hhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 602 QCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 602 ~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+.++.+++.+||+.||++||+++|+
T Consensus 224 ~~~~~~~~li~~~l~~~P~~Rp~~~ei 250 (279)
T cd06619 224 QFSEKFVHFITQCMRKQPKERPAPENL 250 (279)
T ss_pred cCCHHHHHHHHHHhhCChhhCCCHHHH
Confidence 234568999999999999999998764
|
Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p |
| >KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-24 Score=211.60 Aligned_cols=186 Identities=22% Similarity=0.320 Sum_probs=133.2
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchh--------------HHHHHHHHHHHhhcccCCCccee
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYRE--------------AFKNFDIECDMMKHIRHRNLIKI 488 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~--------------~~~~~~~E~~~l~~l~h~niv~l 488 (628)
...+.|...+.||+|.||.|-+|+. .+++.||||++.+.... ..+...+||.+|++++|||||+|
T Consensus 94 k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~L 173 (576)
T KOG0585|consen 94 KQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKL 173 (576)
T ss_pred eehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEE
Confidence 4467899999999999999999997 67999999999643210 12467899999999999999999
Q ss_pred eeeccCCC---------------cc-----------------------------------------------------cc
Q 037488 489 ISSCSNDD---------------FK-----------------------------------------------------AD 500 (628)
Q Consensus 489 ~~~~~~~~---------------~~-----------------------------------------------------~D 500 (628)
+++-.+.. .. +|
T Consensus 174 iEvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~~g~VKIsD 253 (576)
T KOG0585|consen 174 IEVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSSDGTVKISD 253 (576)
T ss_pred EEeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEEcCCCcEEeec
Confidence 88643321 00 49
Q ss_pred ccccccccccCc---ccccccccccccccCccccccCc---c-CcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHH
Q 037488 501 FGMAKPLLKEDQ---SLIQTQTLATIGYMAPEYGREGR---V-STNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWV 573 (628)
Q Consensus 501 FGla~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~---~-~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~ 573 (628)
||++........ .......+||+.|||||...++. | +.+.||||+||.||.|+.|+.||.+.+. + ...
T Consensus 254 FGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~----~-~l~ 328 (576)
T KOG0585|consen 254 FGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFE----L-ELF 328 (576)
T ss_pred cceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchH----H-HHH
Confidence 999986522110 01123368999999999988743 3 6688999999999999999999965321 1 111
Q ss_pred HhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 574 NDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. +++...+ .++..++...++++||.++|.+||++|.+..+|
T Consensus 329 ~--------KIvn~pL------~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~i 369 (576)
T KOG0585|consen 329 D--------KIVNDPL------EFPENPEINEDLKDLIKRLLEKDPEQRITLPDI 369 (576)
T ss_pred H--------HHhcCcc------cCCCcccccHHHHHHHHHHhhcChhheeehhhh
Confidence 1 1111111 112222456779999999999999999998765
|
|
| >cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-24 Score=220.02 Aligned_cols=169 Identities=19% Similarity=0.262 Sum_probs=125.8
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---------- 498 (628)
+.||+|+||.||+++. .+|+.||||++.... ......+.+|+++++.++||||+++++++..++..
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g 80 (328)
T cd05593 1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG 80 (328)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence 3689999999999986 579999999997532 23456788999999999999999998876543311
Q ss_pred --------------------------------------------------------ccccccccccccCccccccccccc
Q 037488 499 --------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLAT 522 (628)
Q Consensus 499 --------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt 522 (628)
+|||+++....... .....+||
T Consensus 81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt 158 (328)
T cd05593 81 ELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAA--TMKTFCGT 158 (328)
T ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCccCCCccc--ccccccCC
Confidence 39999885432211 12345799
Q ss_pred ccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhh
Q 037488 523 IGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQ 602 (628)
Q Consensus 523 ~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (628)
+.|+|||++.+..++.++||||+||++|||++|+.||..... ........ .. ....+..
T Consensus 159 ~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~-----~~~~~~~~------------~~----~~~~p~~ 217 (328)
T cd05593 159 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----EKLFELIL------------ME----DIKFPRT 217 (328)
T ss_pred cCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCH-----HHHHHHhc------------cC----CccCCCC
Confidence 999999999999999999999999999999999999965321 11111100 00 0112234
Q ss_pred hHHHHHHHhhcccCCCcccCCC
Q 037488 603 CVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 603 ~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
.+.++.+++.+||+.||++||+
T Consensus 218 ~~~~~~~li~~~L~~dP~~R~~ 239 (328)
T cd05593 218 LSADAKSLLSGLLIKDPNKRLG 239 (328)
T ss_pred CCHHHHHHHHHHcCCCHHHcCC
Confidence 5667999999999999999983
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate |
| >cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-24 Score=219.87 Aligned_cols=169 Identities=21% Similarity=0.325 Sum_probs=124.9
Q ss_pred cccccCCccEEEEEEe----cCCcEEEEEEeeccc----hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 433 NLIDRGGIGYVYKRRI----HYGMEVAVKVFDLQY----REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
+.||+|+||.||+++. .+++.||||+++... ......+.+|+++++.++||||+++++++..++..
T Consensus 2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~ 81 (323)
T cd05584 2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY 81 (323)
T ss_pred ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence 5799999999999875 357899999997532 22345678899999999999999998877543311
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+++....... ....
T Consensus 82 ~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~ 159 (323)
T cd05584 82 LSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGT--VTHT 159 (323)
T ss_pred CCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCC--cccc
Confidence 49999885433221 2234
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
..||+.|+|||++.+..++.++||||+||++|||++|+.||..... ........ ... ..
T Consensus 160 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~-----~~~~~~~~------------~~~----~~ 218 (323)
T cd05584 160 FCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENR-----KKTIDKIL------------KGK----LN 218 (323)
T ss_pred cCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCH-----HHHHHHHH------------cCC----CC
Confidence 5799999999999998899999999999999999999999965321 11111110 000 11
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
.+...+.++.+++.+||+.||++||+
T Consensus 219 ~~~~~~~~~~~li~~~l~~~p~~R~~ 244 (323)
T cd05584 219 LPPYLTPEARDLLKKLLKRNPSSRLG 244 (323)
T ss_pred CCCCCCHHHHHHHHHHcccCHhHcCC
Confidence 22344667899999999999999994
|
Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in |
| >cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-24 Score=222.59 Aligned_cols=134 Identities=22% Similarity=0.214 Sum_probs=109.2
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF---- 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 497 (628)
..++|...+.||+|+||.||+|+. ..++.||||++... .....+.+.+|+.+++.++||||+++++++...+.
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~ 101 (364)
T cd07875 22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF 101 (364)
T ss_pred hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence 457899999999999999999986 56899999999653 23345678899999999999999999887643210
Q ss_pred -----------------------------------------------------------------cccccccccccccCc
Q 037488 498 -----------------------------------------------------------------KADFGMAKPLLKEDQ 512 (628)
Q Consensus 498 -----------------------------------------------------------------~~DFGla~~~~~~~~ 512 (628)
.+|||+|+.....
T Consensus 102 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~-- 179 (364)
T cd07875 102 QDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS-- 179 (364)
T ss_pred CeEEEEEeCCCCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEEEEeCCCccccCCC--
Confidence 0499999864322
Q ss_pred ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCc
Q 037488 513 SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDE 561 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~ 561 (628)
.......||..|+|||++.+..++.++||||+||++|||++|+.||..
T Consensus 180 -~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~ 227 (364)
T cd07875 180 -FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPG 227 (364)
T ss_pred -CcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCC
Confidence 122345799999999999999999999999999999999999999965
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-25 Score=200.32 Aligned_cols=182 Identities=21% Similarity=0.257 Sum_probs=142.5
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--------hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCC
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--------REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDD 496 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 496 (628)
..|...+++|.|..++|.++.. ++|+.+|+|++.... .+..+.-.+|+.||+++ -||+|+++.++++...
T Consensus 17 ~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~s 96 (411)
T KOG0599|consen 17 AKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDA 96 (411)
T ss_pred hhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcc
Confidence 5677889999999999998765 789999999996421 12234456899999998 5999999999987654
Q ss_pred cc------------------------------------------------------------------cccccccccccc
Q 037488 497 FK------------------------------------------------------------------ADFGMAKPLLKE 510 (628)
Q Consensus 497 ~~------------------------------------------------------------------~DFGla~~~~~~ 510 (628)
+. +|||+|..+...
T Consensus 97 F~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILlddn~~i~isDFGFa~~l~~G 176 (411)
T KOG0599|consen 97 FVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNMNIKISDFGFACQLEPG 176 (411)
T ss_pred hhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeeccccceEEeccceeeccCCc
Confidence 32 399999987554
Q ss_pred CcccccccccccccccCcccccc------CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcccee
Q 037488 511 DQSLIQTQTLATIGYMAPEYGRE------GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKV 584 (628)
Q Consensus 511 ~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (628)
. .....|||++|+|||.+.- ..|+..+|.||.||+||-++.|.+||... .+.+ +
T Consensus 177 e---kLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHR---kQml--------------M 236 (411)
T KOG0599|consen 177 E---KLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHR---KQML--------------M 236 (411)
T ss_pred h---hHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHH---HHHH--------------H
Confidence 3 2356799999999998752 34899999999999999999999999541 1110 1
Q ss_pred ecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 585 VDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.-++.+.+....+.|.+.+.++++||.+|++.||.+|.|+.|+
T Consensus 237 LR~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritake~ 280 (411)
T KOG0599|consen 237 LRMIMEGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAKEA 280 (411)
T ss_pred HHHHHhcccccCCcchhhccccHHHHHHHHHeeCchhcccHHHH
Confidence 12234566667777888999999999999999999999998763
|
|
| >cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-24 Score=223.91 Aligned_cols=180 Identities=19% Similarity=0.264 Sum_probs=128.9
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|+..+.||+|+||.||+|+. .+|+.||||+++... ......+.+|++++..++||||+++++++.+++..
T Consensus 1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~ 80 (364)
T cd05599 1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM 80 (364)
T ss_pred CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence 4688899999999999999987 579999999997532 23455678899999999999999999876544321
Q ss_pred --------------------------------------------------------------ccccccccccccCcc---
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQS--- 513 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~--- 513 (628)
+|||+++.+......
T Consensus 81 E~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~ 160 (364)
T cd05599 81 EYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFY 160 (364)
T ss_pred CCCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccceecccccccccc
Confidence 499998754321100
Q ss_pred ---------------------------------cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCC
Q 037488 514 ---------------------------------LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTD 560 (628)
Q Consensus 514 ---------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~ 560 (628)
....+.+||++|||||++.+..|+.++||||+||++|||++|+.||.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~ 240 (364)
T cd05599 161 RILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFC 240 (364)
T ss_pred ccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCC
Confidence 01113469999999999999999999999999999999999999997
Q ss_pred cccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCC
Q 037488 561 EIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
...+. ......... ......+.....+.++.+++.+|+. +|.+|++
T Consensus 241 ~~~~~-----~~~~~i~~~------------~~~~~~~~~~~~s~~~~~li~~ll~-~p~~R~~ 286 (364)
T cd05599 241 SDNPQ-----ETYRKIINW------------KETLQFPDEVPLSPEAKDLIKRLCC-EAERRLG 286 (364)
T ss_pred CCCHH-----HHHHHHHcC------------CCccCCCCCCCCCHHHHHHHHHHcc-CHhhcCC
Confidence 53221 111110000 0000000111235678999999996 9999998
|
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica |
| >cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-24 Score=216.03 Aligned_cols=183 Identities=26% Similarity=0.438 Sum_probs=132.8
Q ss_pred hcCCCcccccccCCccEEEEEEec------CCcEEEEEEeeccchh-HHHHHHHHHHHhhcccCCCcceeeeeccCCCc-
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQYRE-AFKNFDIECDMMKHIRHRNLIKIISSCSNDDF- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~- 497 (628)
.+.|...+.||+|+||.||+|... +++.||||+++..... ..+.+.+|++++++++||||+++++++..+..
T Consensus 4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~ 83 (280)
T cd05049 4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPP 83 (280)
T ss_pred hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCe
Confidence 356788899999999999999763 2578999999754333 45789999999999999999999887543210
Q ss_pred -------------------------------------------------------------------------------c
Q 037488 498 -------------------------------------------------------------------------------K 498 (628)
Q Consensus 498 -------------------------------------------------------------------------------~ 498 (628)
.
T Consensus 84 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~kl 163 (280)
T cd05049 84 IMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKI 163 (280)
T ss_pred EEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCCCeEEE
Confidence 0
Q ss_pred ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhc
Q 037488 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLL 577 (628)
Q Consensus 499 ~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~ 577 (628)
+|||+++...............+++.|+|||++.++.++.++||||+||++|||++ |+.||...... .......
T Consensus 164 ~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~--~~~~~~~--- 238 (280)
T cd05049 164 GDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNE--EVIECIT--- 238 (280)
T ss_pred CCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHH---
Confidence 38988875433322222234457889999999999999999999999999999999 99998653221 1111111
Q ss_pred CCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 578 PISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+. ....+..++.++.+++.+||+.||++||++.||
T Consensus 239 ------------~~~---~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ei 274 (280)
T cd05049 239 ------------QGR---LLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDI 274 (280)
T ss_pred ------------cCC---cCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHH
Confidence 000 001122356679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt |
| >cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4 | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-24 Score=214.28 Aligned_cols=197 Identities=23% Similarity=0.261 Sum_probs=129.9
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcc---cCCCcceeeeeccCCCc----
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHI---RHRNLIKIISSCSNDDF---- 497 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~~~~---- 497 (628)
+|+..+.||+|+||.||+|+. .+|+.||+|.++... ......+.+|+++++.+ +||||+++++++.....
T Consensus 1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~ 80 (288)
T cd07863 1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET 80 (288)
T ss_pred CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence 478889999999999999987 579999999987532 11223456777777765 69999999987643110
Q ss_pred -c-------------------------------------------------------------------ccccccccccc
Q 037488 498 -K-------------------------------------------------------------------ADFGMAKPLLK 509 (628)
Q Consensus 498 -~-------------------------------------------------------------------~DFGla~~~~~ 509 (628)
. +|||+++....
T Consensus 81 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~ 160 (288)
T cd07863 81 KVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLARIYSC 160 (288)
T ss_pred eEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccCccccccC
Confidence 0 39999886532
Q ss_pred cCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhh-cCC--ccceee-
Q 037488 510 EDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDL-LPI--SVMKVV- 585 (628)
Q Consensus 510 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~-~~~--~~~~~~- 585 (628)
.. ......||..|+|||++.+..++.++||||+||++|||++|++||......+ ......... .+. .+....
T Consensus 161 ~~---~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 236 (288)
T cd07863 161 QM---ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEAD-QLGKIFDLIGLPPEDDWPRDVT 236 (288)
T ss_pred cc---cCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHH-HHHHHHHHhCCCChhhCccccc
Confidence 21 1234568999999999999899999999999999999999999996532211 111111110 000 000000
Q ss_pred --cccccCC-cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 --DAHLLSQ-EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 --~~~~~~~-~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....... ..........++.++.+++.+|++.||++|||+.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~ 282 (288)
T cd07863 237 LPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRA 282 (288)
T ss_pred ccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHH
Confidence 0000000 000011112456678999999999999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou |
| >cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-24 Score=216.48 Aligned_cols=198 Identities=18% Similarity=0.177 Sum_probs=134.0
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
++|...+.||+|+||.||+|+. .+++.||+|+++... ......+.+|++++++++||||+++++++..++..
T Consensus 6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 85 (309)
T cd07872 6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEY 85 (309)
T ss_pred CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeC
Confidence 5788899999999999999987 568899999997543 22334577899999999999999999987543211
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+++....... ....
T Consensus 86 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~--~~~~ 163 (309)
T cd07872 86 LDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTK--TYSN 163 (309)
T ss_pred CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECccccceecCCCcc--cccc
Confidence 39999875432221 1234
Q ss_pred ccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC----ccceeecccc----
Q 037488 519 TLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI----SVMKVVDAHL---- 589 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---- 589 (628)
..||+.|+|||++.+ ..++.++||||+||++|||+||++||......+ ....... ..+. .+..+.....
T Consensus 164 ~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 241 (309)
T cd07872 164 EVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVED-ELHLIFR-LLGTPTEETWPGISSNDEFKNY 241 (309)
T ss_pred ccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHH-HhCCCCHHHHhhhcchhhhhhh
Confidence 568999999998865 468999999999999999999999997533211 1111111 1110 0000000000
Q ss_pred -cCCc--ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 -LSQE--DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 -~~~~--~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.... ..........+.++.+++.+||+.||++|||+.|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~ 283 (309)
T cd07872 242 NFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEA 283 (309)
T ss_pred hcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHH
Confidence 0000 00001112356778999999999999999998764
|
Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play |
| >cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2 | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-24 Score=215.21 Aligned_cols=181 Identities=22% Similarity=0.360 Sum_probs=131.2
Q ss_pred CCCcccccccCCccEEEEEEec------CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc---
Q 037488 428 GFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--- 497 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--- 497 (628)
+|...+.||+|+||.||+|+.. .++.||+|+++... ....+.+.+|+.+++.++|||||++++++...+.
T Consensus 6 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~ 85 (283)
T cd05091 6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSM 85 (283)
T ss_pred HHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEE
Confidence 4666788999999999999852 25789999997543 2334668899999999999999999886532110
Q ss_pred -------------------------------------------------------------------------------c
Q 037488 498 -------------------------------------------------------------------------------K 498 (628)
Q Consensus 498 -------------------------------------------------------------------------------~ 498 (628)
.
T Consensus 86 ~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~kl 165 (283)
T cd05091 86 IFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVKI 165 (283)
T ss_pred EEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEecCCCceEe
Confidence 0
Q ss_pred ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhc
Q 037488 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLL 577 (628)
Q Consensus 499 ~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~ 577 (628)
+|||+++...............+++.|+|||++.++.++.++||||+||++|||++ |..||.+... ..+.....
T Consensus 166 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~-----~~~~~~i~ 240 (283)
T cd05091 166 SDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN-----QDVIEMIR 240 (283)
T ss_pred cccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCH-----HHHHHHHH
Confidence 39999886543322222234457889999999988899999999999999999998 8888865322 11111111
Q ss_pred CCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 578 PISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. . ....+..++..+.+++.+||+.+|++||++.||
T Consensus 241 ~~------------~---~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i 276 (283)
T cd05091 241 NR------------Q---VLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDI 276 (283)
T ss_pred cC------------C---cCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHH
Confidence 00 0 011234567779999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-23 Score=223.02 Aligned_cols=265 Identities=23% Similarity=0.293 Sum_probs=178.8
Q ss_pred CCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCc
Q 037488 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLK 113 (628)
Q Consensus 34 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~ 113 (628)
+-..|+|++|.++ .+|..+. ++|+.|++.+|+++.+. . .+++|+.|++++|+|+.++.. .++|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP-~---lp~~Lk~LdLs~N~LtsLP~l---------p~sL~ 265 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTSLPVL---------PPGLL 265 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCC-C---CCCCCcEEEecCCccCcccCc---------ccccc
Confidence 3567888888887 4565554 47888999999888753 2 257888999999988876431 35788
Q ss_pred EEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccC
Q 037488 114 YFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYN 193 (628)
Q Consensus 114 ~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 193 (628)
.|++++|.+..+ |. ++..|+.|++++|+++. +|. .+++|+.|++++|++++ +|.. ..+|+.|++++|
T Consensus 266 ~L~Ls~N~L~~L-p~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N 332 (788)
T PRK15387 266 ELSIFSNPLTHL-PA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNN 332 (788)
T ss_pred eeeccCCchhhh-hh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccC
Confidence 888888888743 22 33456777788887764 333 24577888888888774 3432 235677778888
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCc
Q 037488 194 QLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLE 273 (628)
Q Consensus 194 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 273 (628)
++.+ +|.. ..+|+.|+|++|+|++ +|.. .++|+.|++++|+|+.+|.. ..+|+.|++++|.+++ +|..
T Consensus 333 ~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-LP~l 400 (788)
T PRK15387 333 QLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPVL 400 (788)
T ss_pred cccc-cccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCccc---ccccceEEecCCcccC-CCCc
Confidence 7764 4431 2467788888888775 3432 24667777888888777753 2467778888887774 3332
Q ss_pred ccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhh
Q 037488 274 IGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLE 347 (628)
Q Consensus 274 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 347 (628)
..+|+.|++++|+++. +|.. +.+|+.|++++|+++ .+|..+..+++|+.|++++|.+++..+..+.
T Consensus 401 ---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 401 ---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred ---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 2457777788777774 4432 345677777777776 5677777777777777777777776665553
|
|
| >cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-24 Score=215.76 Aligned_cols=182 Identities=26% Similarity=0.438 Sum_probs=132.3
Q ss_pred cCCCcccccccCCccEEEEEEe------cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI------HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
.+|...+.||+|+||.||++.. .++..+|+|.+........+.+.+|++++++++||||++++++|..++..
T Consensus 5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 84 (288)
T cd05093 5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 84 (288)
T ss_pred HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEE
Confidence 4677889999999999999874 23567999999765555567799999999999999999999876532110
Q ss_pred -----------------------------------------------------------------------------ccc
Q 037488 499 -----------------------------------------------------------------------------ADF 501 (628)
Q Consensus 499 -----------------------------------------------------------------------------~DF 501 (628)
+||
T Consensus 85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~~~kl~df 164 (288)
T cd05093 85 VFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDF 164 (288)
T ss_pred EEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEeccC
Confidence 388
Q ss_pred cccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCc
Q 037488 502 GMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPIS 580 (628)
Q Consensus 502 Gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~ 580 (628)
|+++...............++..|+|||++.+..++.++|||||||++|||+| |++||....... .......
T Consensus 165 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~-~~~~i~~------ 237 (288)
T cd05093 165 GMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE-VIECITQ------ 237 (288)
T ss_pred CccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHHc------
Confidence 88876533322222233456889999999998899999999999999999999 899986532211 0110000
Q ss_pred cceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 581 VMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+. ....+..++.++.+++.+||+.||.+|||+.||
T Consensus 238 ----------~~---~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v 272 (288)
T cd05093 238 ----------GR---VLQRPRTCPKEVYDLMLGCWQREPHMRLNIKEI 272 (288)
T ss_pred ----------CC---cCCCCCCCCHHHHHHHHHHccCChhhCCCHHHH
Confidence 00 001122345679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly |
| >cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-24 Score=210.31 Aligned_cols=183 Identities=21% Similarity=0.260 Sum_probs=133.2
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|+..+.||+|+||.||+|+. .+++.||||++... .......+.+|+++++.++||||+++++++...+..
T Consensus 2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 81 (267)
T cd08228 2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL 81 (267)
T ss_pred cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence 5788899999999999999987 57899999988642 234456788999999999999999999876432210
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+++.......
T Consensus 82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~ 161 (267)
T cd08228 82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT 161 (267)
T ss_pred EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECccccceeccchhH
Confidence 38888876532211
Q ss_pred ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 513 SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
......|++.|+|||++.+..++.++|||||||++|||++|+.||..... ....+......
T Consensus 162 --~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~---~~~~~~~~~~~-------------- 222 (267)
T cd08228 162 --AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM---NLFSLCQKIEQ-------------- 222 (267)
T ss_pred --HHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccc---cHHHHHHHHhc--------------
Confidence 11234689999999999888899999999999999999999999854221 11122111100
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+...+..+.+++.+||+.+|++||++.||
T Consensus 223 ~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~v 258 (267)
T cd08228 223 CDYPPLPTEHYSEKLRELVSMCIYPDPDQRPDIGYV 258 (267)
T ss_pred CCCCCCChhhcCHHHHHHHHHHCCCCcccCcCHHHH
Confidence 000011122345679999999999999999998764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase |
| >cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-24 Score=212.44 Aligned_cols=182 Identities=22% Similarity=0.352 Sum_probs=130.8
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCc----EEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGM----EVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
++|...+.||+|+||+||+|.+ .+|+ .+|+|.+.... ......+..|+..+++++||||+++++++.+....
T Consensus 7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~~~~~~i 86 (279)
T cd05111 7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPGASLQLV 86 (279)
T ss_pred hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECCCccEEE
Confidence 5678889999999999999986 4454 47777775432 23345678889999999999999999987543211
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+++.........
T Consensus 87 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~ 166 (279)
T cd05111 87 TQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKY 166 (279)
T ss_pred EEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCccceeccCCCccc
Confidence 3999998654333222
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
......|+..|+|||++.++.++.++|||||||++|||++ |+.||.+..+. ....+....
T Consensus 167 ~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~--~~~~~~~~~----------------- 227 (279)
T cd05111 167 FYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPH--EVPDLLEKG----------------- 227 (279)
T ss_pred ccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHH--HHHHHHHCC-----------------
Confidence 2234457889999999999999999999999999999998 99999754221 111111100
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||..||++|||+.|+
T Consensus 228 -~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~el 261 (279)
T cd05111 228 -ERLAQPQICTIDVYMVMVKCWMIDENVRPTFKEL 261 (279)
T ss_pred -CcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence 0011122345568899999999999999999764
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r |
| >cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-24 Score=211.31 Aligned_cols=180 Identities=21% Similarity=0.322 Sum_probs=130.2
Q ss_pred cCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-------- 498 (628)
.+|+..+.||+|+||.||+|+..++..+|+|.+..... ....+.+|+.++++++||||++++++|..++..
T Consensus 4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~ 82 (256)
T cd05114 4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAM-SEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFME 82 (256)
T ss_pred HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCCc-cHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCC
Confidence 45777889999999999999987778899999864322 235688999999999999999999987543211
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||.++....... ......
T Consensus 83 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~-~~~~~~ 161 (256)
T cd05114 83 NGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEY-TSSSGA 161 (256)
T ss_pred CCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCccccCCCce-eccCCC
Confidence 38888875432211 111233
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
.++..|+|||++.+..++.++|||||||++|||++ |+.||...... ........ . . ...
T Consensus 162 ~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~--~~~~~i~~---~------------~---~~~ 221 (256)
T cd05114 162 KFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNY--EVVEMISR---G------------F---RLY 221 (256)
T ss_pred CCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHH--HHHHHHHC---C------------C---CCC
Confidence 46778999999998899999999999999999999 89998653211 11111100 0 0 001
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+...+.++.+++.+||+.+|++||++.|+
T Consensus 222 ~~~~~~~~~~~li~~c~~~~p~~Rps~~~l 251 (256)
T cd05114 222 RPKLASMTVYEVMYSCWHEKPEGRPTFAEL 251 (256)
T ss_pred CCCCCCHHHHHHHHHHccCCcccCcCHHHH
Confidence 111234568999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h |
| >cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-24 Score=210.11 Aligned_cols=183 Identities=21% Similarity=0.293 Sum_probs=133.6
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-----hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-----REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
++|...+.||+|++|.||+|.. .+++.||+|.+.... ....+.+.+|++++++++||||+++++++.+++..
T Consensus 2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~ 81 (263)
T cd06625 2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI 81 (263)
T ss_pred CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence 5788899999999999999986 568999999986432 22345688999999999999999999987653321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+++.........
T Consensus 82 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~ 161 (263)
T cd06625 82 FMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSG 161 (263)
T ss_pred EEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecccccccc
Confidence 3899887543221111
Q ss_pred -ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 515 -IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 515 -~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
......|+..|+|||++.+..++.++||||+||++|||++|+.||..... ......... .
T Consensus 162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~----~~~~~~~~~---------------~ 222 (263)
T cd06625 162 TGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEA----MAAIFKIAT---------------Q 222 (263)
T ss_pred ccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccch----HHHHHHHhc---------------c
Confidence 01234688999999999998999999999999999999999999865311 111110000 0
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+..++.++.+++.+||..+|++|||+.|+
T Consensus 223 ~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l 257 (263)
T cd06625 223 PTNPQLPSHVSPDARNFLRRTFVENAKKRPSAEEL 257 (263)
T ss_pred CCCCCCCccCCHHHHHHHHHHhhcCcccCCCHHHH
Confidence 00112233456679999999999999999998764
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t |
| >cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10 | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-24 Score=212.12 Aligned_cols=181 Identities=17% Similarity=0.277 Sum_probs=130.4
Q ss_pred cCCCcccccccCCccEEEEEEec----CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIH----YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.+|+..+.||+|+||.||+|.+. .+..||+|.++... ......|.+|+.++++++||||+++++++..++..
T Consensus 5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 84 (266)
T cd05064 5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIV 84 (266)
T ss_pred HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEE
Confidence 46788899999999999999752 36789999997543 23346789999999999999999999987654321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||.+........ .
T Consensus 85 ~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~-~ 163 (266)
T cd05064 85 TEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAI-Y 163 (266)
T ss_pred EEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCcccccccccch-h
Confidence 37776654321111 1
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
......++..|+|||++.+..++.++|||||||++||+++ |+.||.+..... .......
T Consensus 164 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~--~~~~~~~------------------ 223 (266)
T cd05064 164 TTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQD--VIKAVED------------------ 223 (266)
T ss_pred cccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHH--HHHHHHC------------------
Confidence 1112346788999999999999999999999999999775 999997532211 1111100
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+.+..++..+.+++.+||+.+|++||++.||
T Consensus 224 ~~~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i 258 (266)
T cd05064 224 GFRLPAPRNCPNLLHQLMLDCWQKERGERPRFSQI 258 (266)
T ss_pred CCCCCCCCCCCHHHHHHHHHHcCCCchhCCCHHHH
Confidence 00112234567779999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor |
| >cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-24 Score=212.99 Aligned_cols=183 Identities=21% Similarity=0.247 Sum_probs=135.4
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
..+|+..+.||+|+||.||+|.. .+++.||+|.+..........+.+|+.+++.++||||+++++++..+...
T Consensus 19 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~ 98 (296)
T cd06654 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 98 (296)
T ss_pred ccceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecc
Confidence 35788889999999999999986 67899999999866555567788999999999999999999876543211
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||+++....... .....
T Consensus 99 ~~~~~L~~~~~~~~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~ 176 (296)
T cd06654 99 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTM 176 (296)
T ss_pred cCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchhcccccc--ccCcc
Confidence 39998876433221 12335
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhc
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVI 599 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (628)
.|++.|+|||++.+..++.++|||||||++|||++|+.||....+.. .+..... ... .....
T Consensus 177 ~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~----~~~~~~~--------~~~------~~~~~ 238 (296)
T cd06654 177 VGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR----ALYLIAT--------NGT------PELQN 238 (296)
T ss_pred cCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHH----hHHHHhc--------CCC------CCCCC
Confidence 79999999999998889999999999999999999999996532211 1110000 000 00011
Q ss_pred hhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 600 KGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 600 ~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+...+..+.+++.+||..||++|||+.|+
T Consensus 239 ~~~~~~~l~~li~~~l~~~p~~Rpt~~ei 267 (296)
T cd06654 239 PEKLSAIFRDFLNRCLDMDVEKRGSAKEL 267 (296)
T ss_pred ccccCHHHHHHHHHHCcCCcccCcCHHHH
Confidence 22344568999999999999999998764
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-24 Score=215.90 Aligned_cols=171 Identities=18% Similarity=0.236 Sum_probs=123.8
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||.||+|+. .+++.||||+++... ....+.+..|..++... +||||+++++++..++..
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g 80 (316)
T cd05592 1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG 80 (316)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence 3689999999999987 568899999997532 22344556777777654 899999998876543211
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+|+...... ......+|
T Consensus 81 g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~--~~~~~~~g 158 (316)
T cd05592 81 GDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGE--GKASTFCG 158 (316)
T ss_pred CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCC--CccccccC
Confidence 3999998643322 12244579
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchh
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG 601 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (628)
|+.|||||++.+..++.++|||||||++|||++|+.||..... ......... ..+..+.
T Consensus 159 t~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~-----~~~~~~i~~----------------~~~~~~~ 217 (316)
T cd05592 159 TPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDE-----DELFDSILN----------------DRPHFPR 217 (316)
T ss_pred CccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHc----------------CCCCCCC
Confidence 9999999999999999999999999999999999999975321 111111000 0011222
Q ss_pred hhHHHHHHHhhcccCCCcccCCCCC
Q 037488 602 QCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 602 ~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
.++.++.+++.+||+.||++||++.
T Consensus 218 ~~~~~~~~ll~~~l~~~P~~R~~~~ 242 (316)
T cd05592 218 WISKEAKDCLSKLFERDPTKRLGVD 242 (316)
T ss_pred CCCHHHHHHHHHHccCCHHHcCCCh
Confidence 3456689999999999999999864
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp |
| >cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5 | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-24 Score=211.46 Aligned_cols=179 Identities=17% Similarity=0.266 Sum_probs=129.2
Q ss_pred CCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 429 FSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
|+..+.||+|+||+||+|.. .+++.||+|.+.... ......+.+|++++++++|+||+++.+++..++..
T Consensus 2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~ 81 (285)
T cd05632 2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI 81 (285)
T ss_pred ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence 66778899999999999987 679999999986532 22345578899999999999999998766443211
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++...... ..
T Consensus 82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~---~~ 158 (285)
T cd05632 82 MNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGE---SI 158 (285)
T ss_pred ccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcceecCCCC---cc
Confidence 3999887543221 11
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
....||..|+|||++.+..++.++||||+||++|||++|+.||....... ....+....... .
T Consensus 159 ~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~-~~~~~~~~~~~~----------------~ 221 (285)
T cd05632 159 RGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKV-KREEVDRRVLET----------------E 221 (285)
T ss_pred cCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhhhcc----------------c
Confidence 34579999999999998899999999999999999999999997532111 111111100000 0
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
...+...+.++.+++.+||+.||++||++.|
T Consensus 222 ~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~ 252 (285)
T cd05632 222 EVYSAKFSEEAKSICKMLLTKDPKQRLGCQE 252 (285)
T ss_pred cccCccCCHHHHHHHHHHccCCHhHcCCCcc
Confidence 0112234556899999999999999999653
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with |
| >KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-24 Score=218.03 Aligned_cols=128 Identities=21% Similarity=0.263 Sum_probs=108.2
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhccc-C-----CCcceeeeeccCCCcc--
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIR-H-----RNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h-----~niv~l~~~~~~~~~~-- 498 (628)
+|.+.+.||+|+||.|.+|.. .+++.||||+++.. .....+...|+++|..++ | -|+|++++|+......
T Consensus 187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~-k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlci 265 (586)
T KOG0667|consen 187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK-KRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCI 265 (586)
T ss_pred EEEEEEEecccccceeEEEEecCCCcEEEEEeeccC-hHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceee
Confidence 789999999999999999987 77999999999854 334566788999999997 4 4999999998765432
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||.|.......
T Consensus 266 VfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~v 345 (586)
T KOG0667|consen 266 VFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRV 345 (586)
T ss_pred eehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEecccccccCCcc
Confidence 3999998653221
Q ss_pred cccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCc
Q 037488 512 QSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDE 561 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~ 561 (628)
-+.+-+..|+|||++.|.+|+.+.||||||||+.||.+|.+-|.+
T Consensus 346 -----ytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG 390 (586)
T KOG0667|consen 346 -----YTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPG 390 (586)
T ss_pred -----eeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCC
Confidence 256788999999999999999999999999999999999887765
|
|
| >cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7 | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=208.23 Aligned_cols=174 Identities=20% Similarity=0.280 Sum_probs=124.7
Q ss_pred cccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------------
Q 037488 435 IDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------------ 498 (628)
Q Consensus 435 ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------------ 498 (628)
||+|+||.||+++. .+|+.||+|++.... ....+.+..|++++++++||||+++++++..+...
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L 80 (277)
T cd05607 1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL 80 (277)
T ss_pred CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence 69999999999986 569999999996432 12234566799999999999999998876543211
Q ss_pred --------------------------------------------------------ccccccccccccCccccccccccc
Q 037488 499 --------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLAT 522 (628)
Q Consensus 499 --------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt 522 (628)
+|||++....... ......||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~---~~~~~~~~ 157 (277)
T cd05607 81 KYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGK---TITQRAGT 157 (277)
T ss_pred HHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCc---eeeccCCC
Confidence 3999987653321 12345699
Q ss_pred ccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhh
Q 037488 523 IGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQ 602 (628)
Q Consensus 523 ~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (628)
..|+|||++.+..++.++||||+||++|||++|+.||....... ....+....... .. . . ....
T Consensus 158 ~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~-~~~~~~~~~~~~--------~~----~--~-~~~~ 221 (277)
T cd05607 158 NGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKV-AKEELKRRTLED--------EV----K--F-EHQN 221 (277)
T ss_pred CCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchh-hHHHHHHHhhcc--------cc----c--c-cccc
Confidence 99999999999889999999999999999999999996532211 111111111100 00 0 0 0112
Q ss_pred hHHHHHHHhhcccCCCcccCCCCCC
Q 037488 603 CVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 603 ~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
.+.++.+++.+||+.||++||+++|
T Consensus 222 ~~~~~~~li~~~L~~~P~~R~~~~~ 246 (277)
T cd05607 222 FTEESKDICRLFLAKKPEDRLGSRE 246 (277)
T ss_pred CCHHHHHHHHHHhccCHhhCCCCcc
Confidence 4566899999999999999999965
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr |
| >cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-24 Score=210.07 Aligned_cols=181 Identities=22% Similarity=0.335 Sum_probs=133.1
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
.++|+..+.||+|+||.||+|...+++.||+|.+..... ..+.+.+|+.++++++||||+++++++.+++..
T Consensus 5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 83 (261)
T cd05072 5 RESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTM-SVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYM 83 (261)
T ss_pred hHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCch-hHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecC
Confidence 457888899999999999999987788899999865332 356789999999999999999998876543211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++....... ....
T Consensus 84 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~-~~~~ 162 (261)
T cd05072 84 AKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEY-TARE 162 (261)
T ss_pred CCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccceecCCCce-eccC
Confidence 39999886533211 1112
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...++..|+|||++.++.++.++|||||||++|||+| |+.||...... .......... .
T Consensus 163 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~--~~~~~~~~~~------------------~ 222 (261)
T cd05072 163 GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNS--DVMSALQRGY------------------R 222 (261)
T ss_pred CCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHH--HHHHHHHcCC------------------C
Confidence 3346788999999998899999999999999999998 99999653211 1111111000 0
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+....++.++.+++.+||..+|++||+++++
T Consensus 223 ~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i 254 (261)
T cd05072 223 MPRMENCPDELYDIMKTCWKEKAEERPTFDYL 254 (261)
T ss_pred CCCCCCCCHHHHHHHHHHccCCcccCcCHHHH
Confidence 11112345678999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa |
| >cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-24 Score=213.05 Aligned_cols=184 Identities=21% Similarity=0.308 Sum_probs=134.2
Q ss_pred hhcCCCcccccccCCccEEEEEEecC-----CcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIHY-----GMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF- 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~~-----~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~- 497 (628)
..++|...+.||+|+||.||+|.... +..||+|++... .....+.+.+|+.++++++||||+++++++..+..
T Consensus 4 ~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 83 (280)
T cd05043 4 SRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEP 83 (280)
T ss_pred chhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 35678888999999999999998754 688999998643 33446778899999999999999999997643210
Q ss_pred ------------------------------c--------------------------------------------ccccc
Q 037488 498 ------------------------------K--------------------------------------------ADFGM 503 (628)
Q Consensus 498 ------------------------------~--------------------------------------------~DFGl 503 (628)
. +|||+
T Consensus 84 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d~g~ 163 (280)
T cd05043 84 PFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNAL 163 (280)
T ss_pred CEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECCCCC
Confidence 0 38999
Q ss_pred cccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccc
Q 037488 504 AKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVM 582 (628)
Q Consensus 504 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 582 (628)
++.+.............++..|+|||++.+..++.++|||||||++||+++ |+.||....+ .....+....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~~~------ 235 (280)
T cd05043 164 SRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDP--FEMAAYLKDG------ 235 (280)
T ss_pred cccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCH--HHHHHHHHcC------
Confidence 886543322111223346788999999998889999999999999999999 9999965321 1111111110
Q ss_pred eeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 583 KVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.||
T Consensus 236 ------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~ 269 (280)
T cd05043 236 ------------YRLAQPINCPDELFAVMACCWALDPEERPSFSQL 269 (280)
T ss_pred ------------CCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 0011122346679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It |
| >KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-24 Score=205.82 Aligned_cols=178 Identities=20% Similarity=0.248 Sum_probs=139.4
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.-+|+..+.+|+|+||.|-+|+. ..|+.||||.++.. +..+.-.+.+||+||..++||||++++++|++.+..
T Consensus 52 kHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIviv 131 (668)
T KOG0611|consen 52 KHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIV 131 (668)
T ss_pred hhHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEE
Confidence 34677788999999999999986 67999999999754 344556688999999999999999999998775432
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||++..+.... .
T Consensus 132 MEYaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNly~~~k---f 208 (668)
T KOG0611|consen 132 MEYASGGELYDYISERGSLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNLYADKK---F 208 (668)
T ss_pred EEecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCeeeeccchhhhhcccc---H
Confidence 4999998765443 2
Q ss_pred cccccccccccCccccccCcc-CcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 516 QTQTLATIGYMAPEYGREGRV-STNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~-~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
..++||++-|.+||++.|.+| ++.+|.||+||+||-++.|..||++. +....++..-. +.+.
T Consensus 209 LqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~-----Dhk~lvrQIs~------------GaYr 271 (668)
T KOG0611|consen 209 LQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGR-----DHKRLVRQISR------------GAYR 271 (668)
T ss_pred HHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCc-----hHHHHHHHhhc------------cccc
Confidence 367899999999999999998 78999999999999999999999863 23333332111 1110
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ++.+..+.-||..||..+|++|.|+.+|
T Consensus 272 ----E-P~~PSdA~gLIRwmLmVNP~RRATieDi 300 (668)
T KOG0611|consen 272 ----E-PETPSDASGLIRWMLMVNPERRATIEDI 300 (668)
T ss_pred ----C-CCCCchHHHHHHHHHhcCcccchhHHHH
Confidence 0 1224457789999999999999998764
|
|
| >cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-24 Score=216.52 Aligned_cols=170 Identities=19% Similarity=0.221 Sum_probs=125.1
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||.||+|+. .+++.||||+++... ......+.+|++++..+ +||||+++++++...+..
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~ 80 (318)
T cd05570 1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG 80 (318)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence 3689999999999987 568899999997542 23355677899999888 799999999876543211
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+++....... .....+|
T Consensus 81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~g 158 (318)
T cd05570 81 GDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGV--TTSTFCG 158 (318)
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCC--cccceec
Confidence 39999875322221 1234579
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchh
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG 601 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (628)
|+.|+|||++.+..++.++|||||||++|||++|+.||..... ......... . ....+.
T Consensus 159 ~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~-----~~~~~~i~~------------~----~~~~~~ 217 (318)
T cd05570 159 TPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDE-----DELFQSILE------------D----EVRYPR 217 (318)
T ss_pred CccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCH-----HHHHHHHHc------------C----CCCCCC
Confidence 9999999999999999999999999999999999999965321 111111100 0 011122
Q ss_pred hhHHHHHHHhhcccCCCcccCCCC
Q 037488 602 QCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 602 ~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
.++.++.+++.+||+.||++|||+
T Consensus 218 ~~~~~~~~li~~~l~~dP~~R~s~ 241 (318)
T cd05570 218 WLSKEAKSILKSFLTKNPEKRLGC 241 (318)
T ss_pred cCCHHHHHHHHHHccCCHHHcCCC
Confidence 345678999999999999999998
|
Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re |
| >cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-24 Score=220.13 Aligned_cols=185 Identities=22% Similarity=0.408 Sum_probs=132.3
Q ss_pred hhcCCCcccccccCCccEEEEEEec------CCcEEEEEEeeccc-hhHHHHHHHHHHHhhccc-CCCcceeeeeccCCC
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIR-HRNLIKIISSCSNDD 496 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~ 496 (628)
..++|...+.||+|+||.||+|... .+..||||+++... ....+.+.+|+++++++. |||||+++++|.++.
T Consensus 35 ~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~ 114 (400)
T cd05105 35 PRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSG 114 (400)
T ss_pred cccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCC
Confidence 3567888899999999999998752 23579999996533 334567899999999996 999999998764310
Q ss_pred --------------------------------------------------------------------------------
Q 037488 497 -------------------------------------------------------------------------------- 496 (628)
Q Consensus 497 -------------------------------------------------------------------------------- 496 (628)
T Consensus 115 ~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (400)
T cd05105 115 PIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEI 194 (400)
T ss_pred ceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhh
Confidence
Q ss_pred ---------------------------------------c----------------------------------------
Q 037488 497 ---------------------------------------F---------------------------------------- 497 (628)
Q Consensus 497 ---------------------------------------~---------------------------------------- 497 (628)
.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nill~~~~ 274 (400)
T cd05105 195 KEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGK 274 (400)
T ss_pred hhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEEEeCCC
Confidence 0
Q ss_pred ---cccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHH
Q 037488 498 ---KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWV 573 (628)
Q Consensus 498 ---~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~ 573 (628)
.+|||+++...............|+..|||||++.+..++.++|||||||++|||++ |..||........ .....
T Consensus 275 ~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~-~~~~~ 353 (400)
T cd05105 275 IVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDST-FYNKI 353 (400)
T ss_pred EEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHH-HHHHH
Confidence 038888876543322222233457889999999999999999999999999999997 9999865322111 11100
Q ss_pred HhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 574 NDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. ......+..++.++.+++.+||+.||++|||+.+|
T Consensus 354 ~~------------------~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l 390 (400)
T cd05105 354 KS------------------GYRMAKPDHATQEVYDIMVKCWNSEPEKRPSFLHL 390 (400)
T ss_pred hc------------------CCCCCCCccCCHHHHHHHHHHCccCHhHCcCHHHH
Confidence 00 00111233456779999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- |
| >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=209.09 Aligned_cols=180 Identities=21% Similarity=0.383 Sum_probs=129.5
Q ss_pred CCcccccccCCccEEEEEEec----CCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 429 FSENNLIDRGGIGYVYKRRIH----YGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
|...+.||+|+||.||+|... .+..||+|+++... ......+.+|++.++.++||||+++++++...+.
T Consensus 1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 80 (273)
T cd05035 1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP 80 (273)
T ss_pred CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence 456789999999999999863 24789999987532 3345678999999999999999999986533211
Q ss_pred -------------------------------------------------------------------------ccccccc
Q 037488 498 -------------------------------------------------------------------------KADFGMA 504 (628)
Q Consensus 498 -------------------------------------------------------------------------~~DFGla 504 (628)
.+|||+|
T Consensus 81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~ 160 (273)
T cd05035 81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLS 160 (273)
T ss_pred ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCccce
Confidence 0399998
Q ss_pred ccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccce
Q 037488 505 KPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMK 583 (628)
Q Consensus 505 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (628)
+...............++..|+|||++.+..++.++|||||||++|||++ |.+||.+.... ....+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~--~~~~~~~~-------- 230 (273)
T cd05035 161 KKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENH--EIYDYLRH-------- 230 (273)
T ss_pred eeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHc--------
Confidence 86543322211222346778999999988889999999999999999999 88998653211 11111110
Q ss_pred eecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 584 VVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .....+..++.++.+++.+||+.||++|||+.|+
T Consensus 231 -------~---~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~ 265 (273)
T cd05035 231 -------G---NRLKQPEDCLDELYDLMYSCWRADPKDRPTFTKL 265 (273)
T ss_pred -------C---CCCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 0 0111233456779999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu |
| >cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-24 Score=215.28 Aligned_cols=171 Identities=20% Similarity=0.270 Sum_probs=124.0
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||.||+|+. .+++.||||+++... ....+.+..|..++... +||||+++++++..++..
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~ 80 (316)
T cd05619 1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG 80 (316)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence 3689999999999987 568899999997542 23345567788888764 999999998876543211
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+++....... .....+|
T Consensus 81 g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~g 158 (316)
T cd05619 81 GDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDA--KTCTFCG 158 (316)
T ss_pred CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCC--ceeeecC
Confidence 49999875322211 1234579
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchh
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG 601 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (628)
|+.|||||++.+..++.++||||+||++|||++|+.||..... ........ ... +..+.
T Consensus 159 t~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~-----~~~~~~i~------------~~~----~~~~~ 217 (316)
T cd05619 159 TPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDE-----EELFQSIR------------MDN----PCYPR 217 (316)
T ss_pred CccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCH-----HHHHHHHH------------hCC----CCCCc
Confidence 9999999999999999999999999999999999999965321 11111100 000 01112
Q ss_pred hhHHHHHHHhhcccCCCcccCCCCC
Q 037488 602 QCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 602 ~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
..+.++.+++.+||+.||++||++.
T Consensus 218 ~~~~~~~~li~~~l~~~P~~R~~~~ 242 (316)
T cd05619 218 WLTREAKDILVKLFVREPERRLGVK 242 (316)
T ss_pred cCCHHHHHHHHHHhccCHhhcCCCh
Confidence 2456689999999999999999986
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in |
| >cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-24 Score=212.58 Aligned_cols=182 Identities=23% Similarity=0.267 Sum_probs=135.4
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
.+|+..+.||.|+||.||+|.. .+|+.||+|.+........+.+.+|+++++.++||||+++++++..++..
T Consensus 19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 98 (296)
T cd06655 19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYL 98 (296)
T ss_pred ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEec
Confidence 4588889999999999999986 67999999999765555567788999999999999999999987543311
Q ss_pred ----------------------------------------------------------ccccccccccccCccccccccc
Q 037488 499 ----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTL 520 (628)
Q Consensus 499 ----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~ 520 (628)
+|||+++....... ......
T Consensus 99 ~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~--~~~~~~ 176 (296)
T cd06655 99 AGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQS--KRSTMV 176 (296)
T ss_pred CCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchhcccccc--cCCCcC
Confidence 38998876533321 123356
Q ss_pred ccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhch
Q 037488 521 ATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600 (628)
Q Consensus 521 gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (628)
|+..|+|||.+.+..++.++|||||||++|||++|+.||....+... ....... . ......+
T Consensus 177 ~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~-~~~~~~~-~----------------~~~~~~~ 238 (296)
T cd06655 177 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA-LYLIATN-G----------------TPELQNP 238 (296)
T ss_pred CCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhc-C----------------CcccCCc
Confidence 89999999999988899999999999999999999999965322110 0000000 0 0001122
Q ss_pred hhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 601 GQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 601 ~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..++.++.+++.+||+.||++|||+.++
T Consensus 239 ~~~~~~~~~li~~~l~~dp~~Rpt~~~i 266 (296)
T cd06655 239 EKLSPIFRDFLNRCLEMDVEKRGSAKEL 266 (296)
T ss_pred ccCCHHHHHHHHHHhhcChhhCCCHHHH
Confidence 2345678999999999999999998764
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-24 Score=221.71 Aligned_cols=184 Identities=23% Similarity=0.308 Sum_probs=133.1
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|...+.||+|+||.||+|+. .+|+.||||+++... ......+.+|+++++.++||||+++++++.+++..
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ 80 (350)
T cd05573 1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM 80 (350)
T ss_pred CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence 4688899999999999999987 579999999997532 23456788999999999999999998776543311
Q ss_pred --------------------------------------------------------------ccccccccccccC-----
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKED----- 511 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~----- 511 (628)
+|||+++......
T Consensus 81 e~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~ 160 (350)
T cd05573 81 EYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYY 160 (350)
T ss_pred cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccCcccCccccc
Confidence 3999998654332
Q ss_pred ----------------------cccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccH
Q 037488 512 ----------------------QSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTL 569 (628)
Q Consensus 512 ----------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~ 569 (628)
.........||+.|+|||++.+..++.++|||||||++|||++|+.||......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~---- 236 (350)
T cd05573 161 LNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQ---- 236 (350)
T ss_pred ccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCHH----
Confidence 001123456999999999999999999999999999999999999999753211
Q ss_pred HHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCC-CCCC
Q 037488 570 KHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVN-AKEI 628 (628)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt-~~ev 628 (628)
........ . . .. ...+....++.++.+++.+|+. ||++||+ +.|+
T Consensus 237 -~~~~~i~~--~---~-~~------~~~p~~~~~~~~~~~li~~ll~-dp~~R~~s~~~l 282 (350)
T cd05573 237 -ETYNKIIN--W---K-ES------LRFPPDPPVSPEAIDLICRLLC-DPEDRLGSFEEI 282 (350)
T ss_pred -HHHHHHhc--c---C-Cc------ccCCCCCCCCHHHHHHHHHHcc-ChhhcCCCHHHH
Confidence 11111000 0 0 00 0001111246679999999997 9999999 7653
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the |
| >cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-24 Score=212.54 Aligned_cols=199 Identities=19% Similarity=0.165 Sum_probs=134.2
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
-++|...+.||+|+||.||+|+. .+++.||+|.++... ......+.+|++++++++||||+++++++..+...
T Consensus 5 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e 84 (301)
T cd07873 5 LETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFE 84 (301)
T ss_pred ccceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEe
Confidence 35788899999999999999987 568999999987543 22334577899999999999999999987543211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++....... ...
T Consensus 85 ~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~ 162 (301)
T cd07873 85 YLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTK--TYS 162 (301)
T ss_pred ccccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCC--ccc
Confidence 39998875432211 123
Q ss_pred cccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC----ccceeecccccCC
Q 037488 518 QTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI----SVMKVVDAHLLSQ 592 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 592 (628)
...++..|+|||++.+. .++.++||||+||++|||+||++||......+ ........... .+....+......
T Consensus 163 ~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
T cd07873 163 NEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEE--QLHFIFRILGTPTEETWPGILSNEEFKS 240 (301)
T ss_pred ccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHHHcCCCChhhchhhhccccccc
Confidence 34689999999998754 47899999999999999999999997532211 11111111111 1111111000000
Q ss_pred cc-------cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 ED-------KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~-------~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. .........+.++.+++.+|++.||.+|||+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~ei 283 (301)
T cd07873 241 YNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEA 283 (301)
T ss_pred cccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHH
Confidence 00 0001122456678999999999999999998764
|
Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl |
| >cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-24 Score=214.99 Aligned_cols=171 Identities=20% Similarity=0.241 Sum_probs=125.6
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|.+++..+ +||||+++++++...+..
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~ 80 (320)
T cd05590 1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG 80 (320)
T ss_pred CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence 3689999999999987 568999999997532 23455677899888876 699999998876543211
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+++...... .......|
T Consensus 81 g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~--~~~~~~~g 158 (320)
T cd05590 81 GDLMFHIQKSRRFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNG--KTTSTFCG 158 (320)
T ss_pred chHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCC--Cccccccc
Confidence 3999988543222 12234579
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchh
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG 601 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (628)
|+.|||||++.+..++.++||||+||++|||++|+.||..... .......... ....+.
T Consensus 159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~-----~~~~~~i~~~----------------~~~~~~ 217 (320)
T cd05590 159 TPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENE-----DDLFEAILND----------------EVVYPT 217 (320)
T ss_pred CccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH-----HHHHHHHhcC----------------CCCCCC
Confidence 9999999999999999999999999999999999999975321 1111111100 011122
Q ss_pred hhHHHHHHHhhcccCCCcccCCCCC
Q 037488 602 QCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 602 ~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
..+.++.+++.+||+.||++||++.
T Consensus 218 ~~~~~~~~li~~~L~~dP~~R~~~~ 242 (320)
T cd05590 218 WLSQDAVDILKAFMTKNPTMRLGSL 242 (320)
T ss_pred CCCHHHHHHHHHHcccCHHHCCCCC
Confidence 3456789999999999999999973
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-22 Score=231.46 Aligned_cols=344 Identities=19% Similarity=0.227 Sum_probs=260.2
Q ss_pred CCCCCCEEecCcc---CCCCCCEEEccCCc------ceecCCccccCCC-CCCEEeccCCcccccCccccCCCCCCCEEE
Q 037488 18 NVSTLNSLYLQNV---QLQNLEELLLWGNN------FSGTIPSFIFNAS-KLSRLELQMNSFYGFIPNTFGNLRNLNRLG 87 (628)
Q Consensus 18 ~l~~L~~L~l~~n---~l~~L~~L~ls~N~------l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~ 87 (628)
++.....++++.+ .+.+|+.|.+..+. +...+|..|..++ +|+.|.+.+|.+..+ |..| ...+|+.|+
T Consensus 540 ~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f-~~~~L~~L~ 617 (1153)
T PLN03210 540 DIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNF-RPENLVKLQ 617 (1153)
T ss_pred ccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCcC-CccCCcEEE
Confidence 4455566666554 37889999886653 3345677777764 699999999998765 5666 578999999
Q ss_pred ccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEcc
Q 037488 88 LNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLG 167 (628)
Q Consensus 88 L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~ 167 (628)
+.+|++..++ ..+..+++|+.|+|+++...+.+|. +..+ ..|+.|++.+|.....+|..+..+++|+.|+++
T Consensus 618 L~~s~l~~L~------~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l-~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 618 MQGSKLEKLW------DGVHSLTGLRNIDLRGSKNLKEIPD-LSMA-TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CcCccccccc------cccccCCCCCEEECCCCCCcCcCCc-cccC-CcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 9999988764 3467889999999998865555664 4444 479999999998888899999999999999999
Q ss_pred CCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCC
Q 037488 168 GNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP 247 (628)
Q Consensus 168 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp 247 (628)
+|.....+|..+ ++++|+.|++++|.....+|.. ..+|+.|++++|.+.. +|..+ .+++|+.|++.++....+.
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLW 763 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccc-cccccccccccccchhhcc
Confidence 986666777655 7899999999998765555543 4678999999999875 45544 5788999988875433322
Q ss_pred C--------CccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCC
Q 037488 248 S--------TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIP 319 (628)
Q Consensus 248 ~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 319 (628)
. .....++|+.|++++|.....+|..++++++|+.|++++|...+.+|... .+++|+.|++++|.....+|
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc
Confidence 1 12234689999999998877889999999999999999986555677665 68999999999987665666
Q ss_pred hhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCC-cceecCCCCCcccccccccccC
Q 037488 320 DSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFN-KLEGEIPREGSFRNFLAESFKG 382 (628)
Q Consensus 320 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N-~l~~~~p~~~~~~~~~~~~~~~ 382 (628)
.. ..+|+.|++++|.++ .+|..+..+++|+.|++++| ++.+..+.......+....+.+
T Consensus 843 ~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 843 DI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD 902 (1153)
T ss_pred cc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence 53 368999999999998 46788999999999999984 5554322223333343334433
|
syringae 6; Provisional |
| >cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-24 Score=215.41 Aligned_cols=176 Identities=19% Similarity=0.255 Sum_probs=127.1
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|..++.++ +||||+++++++..+...
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~ 80 (329)
T cd05588 1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG 80 (329)
T ss_pred CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence 3689999999999987 578999999997532 23345678899999998 799999999876543211
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+++...... ......+|
T Consensus 81 g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~g 158 (329)
T cd05588 81 GDLMFHMQRQRKLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPG--DTTSTFCG 158 (329)
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCccccccccCC--CccccccC
Confidence 4999987532221 12234679
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCC---ccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGE---MTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
|+.|+|||++.+..++.++||||+||++|||++|+.||+...... .....+..... .. ....
T Consensus 159 t~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~-----------~~----~~~~ 223 (329)
T cd05588 159 TPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVI-----------LE----KQIR 223 (329)
T ss_pred CccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHH-----------Hc----CCCC
Confidence 999999999999999999999999999999999999996422111 11111111100 00 0112
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
.|..++.++.+++.+||+.||++||++
T Consensus 224 ~p~~~~~~~~~li~~~L~~dP~~R~~~ 250 (329)
T cd05588 224 IPRSLSVKASSVLKGFLNKDPKERLGC 250 (329)
T ss_pred CCCCCCHHHHHHHHHHhccCHHHcCCC
Confidence 233456679999999999999999985
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl |
| >cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-23 Score=208.89 Aligned_cols=174 Identities=17% Similarity=0.260 Sum_probs=125.0
Q ss_pred cccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------------
Q 037488 435 IDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------------ 498 (628)
Q Consensus 435 ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------------ 498 (628)
||+|+||+||++.. .+|+.||||++.... ....+.+..|++++++++||||+++.+++..+...
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L 80 (280)
T cd05608 1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL 80 (280)
T ss_pred CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence 69999999999987 578999999986532 22345678899999999999999998765432210
Q ss_pred ----------------------------------------------------------ccccccccccccCccccccccc
Q 037488 499 ----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTL 520 (628)
Q Consensus 499 ----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~ 520 (628)
+|||+++....... ......
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~ 158 (280)
T cd05608 81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQS--KTKGYA 158 (280)
T ss_pred HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCc--cccccC
Confidence 39999876533221 123457
Q ss_pred ccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhch
Q 037488 521 ATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600 (628)
Q Consensus 521 gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (628)
||+.|+|||++.+..++.++|||||||++|||++|+.||....... .......... .. ....+
T Consensus 159 g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~-~~~~~~~~~~--------~~--------~~~~~ 221 (280)
T cd05608 159 GTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV-ENKELKQRIL--------ND--------SVTYP 221 (280)
T ss_pred CCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcch-hHHHHHHhhc--------cc--------CCCCc
Confidence 9999999999999999999999999999999999999996532111 1111111100 00 01122
Q ss_pred hhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 601 GQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 601 ~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
...+.++.+++.+||+.||++||++++
T Consensus 222 ~~~~~~~~~li~~~l~~~P~~R~~~~~ 248 (280)
T cd05608 222 DKFSPASKSFCEALLAKDPEKRLGFRD 248 (280)
T ss_pred ccCCHHHHHHHHHHhcCCHHHhcCCCC
Confidence 345667999999999999999996543
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g |
| >cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-24 Score=220.60 Aligned_cols=187 Identities=19% Similarity=0.207 Sum_probs=134.2
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
...++|...+.||+|+||.||+|+. .+++.||+|+++... ....+.+.+|+.+++.++||||+++++++.+++..
T Consensus 40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~ 119 (370)
T cd05596 40 MKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLY 119 (370)
T ss_pred CCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence 3456899999999999999999987 578999999997432 23345578899999999999999999876543321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+++....... .
T Consensus 120 lv~Ey~~gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~-~ 198 (370)
T cd05596 120 MVMEYMPGGDLVNLMSNYDIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGM-V 198 (370)
T ss_pred EEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCc-c
Confidence 49999986543221 1
Q ss_pred ccccccccccccCccccccC----ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 515 IQTQTLATIGYMAPEYGREG----RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~----~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
.....+||+.|||||++.+. .++.++||||+||++|||++|+.||..... ........ .
T Consensus 199 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~-----~~~~~~i~--------~---- 261 (370)
T cd05596 199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL-----VGTYSKIM--------D---- 261 (370)
T ss_pred cCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCH-----HHHHHHHH--------c----
Confidence 22346799999999998653 488999999999999999999999975321 11111110 0
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCccc--CCCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEE--RVNAKEI 628 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~--Rpt~~ev 628 (628)
.......+.....+.++.+++.+|++.+|++ |||+.|+
T Consensus 262 ~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~el 301 (370)
T cd05596 262 HKNSLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEI 301 (370)
T ss_pred CCCcCCCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHH
Confidence 0000011111234677999999999999988 9998764
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in |
| >cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-24 Score=222.46 Aligned_cols=179 Identities=20% Similarity=0.231 Sum_probs=126.6
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.|...+.||+|+||.||+|+. .+++.||+|++.... ......+.+|++++++++|||||++++++.+++..
T Consensus 2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E 81 (382)
T cd05625 2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD 81 (382)
T ss_pred CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence 588889999999999999987 678999999997542 23456788999999999999999999877543311
Q ss_pred -------------------------------------------------------------ccccccccccccCc-----
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQ----- 512 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~----- 512 (628)
+|||+|+.......
T Consensus 82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~ 161 (382)
T cd05625 82 YIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQ 161 (382)
T ss_pred CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCccccccccccccc
Confidence 49999864311000
Q ss_pred ----------------------------------------ccccccccccccccCccccccCccCcccchhhHhHHHHHH
Q 037488 513 ----------------------------------------SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIET 552 (628)
Q Consensus 513 ----------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ 552 (628)
.....+.+||+.|||||++.+..|+.++||||+||++|||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~el 241 (382)
T cd05625 162 SGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEM 241 (382)
T ss_pred cccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHH
Confidence 0011234799999999999999999999999999999999
Q ss_pred hhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCC
Q 037488 553 FTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 553 ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
++|++||....+... ...... .......+.....++++.+++.+++ .+|++|++
T Consensus 242 ltG~~Pf~~~~~~~~-~~~i~~----------------~~~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~ 295 (382)
T cd05625 242 LVGQPPFLAQTPLET-QMKVIN----------------WQTSLHIPPQAKLSPEASDLIIKLC-RGPEDRLG 295 (382)
T ss_pred HhCCCCCCCCCHHHH-HHHHHc----------------cCCCcCCCCcccCCHHHHHHHHHHc-cCHhHcCC
Confidence 999999975322110 000000 0000001111234566888888876 59999997
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an |
| >cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-24 Score=212.72 Aligned_cols=184 Identities=23% Similarity=0.379 Sum_probs=131.9
Q ss_pred hhcCCCcccccccCCccEEEEEEec------CCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 497 (628)
..++|+..+.||+|+||.||+|... .+..||||++... .......+.+|+.+++.++||||+++++++..+..
T Consensus 4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~ 83 (277)
T cd05062 4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP 83 (277)
T ss_pred cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence 5677999999999999999998642 3567999998643 23345668899999999999999999987653211
Q ss_pred c----------------------------------------------------------------------------ccc
Q 037488 498 K----------------------------------------------------------------------------ADF 501 (628)
Q Consensus 498 ~----------------------------------------------------------------------------~DF 501 (628)
. +||
T Consensus 84 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~~l~df 163 (277)
T cd05062 84 TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDF 163 (277)
T ss_pred eEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCEEECCC
Confidence 0 388
Q ss_pred cccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCc
Q 037488 502 GMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPIS 580 (628)
Q Consensus 502 Gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~ 580 (628)
|+++...............++..|||||++.++.++.++|||||||++|||++ |+.||.+.... .......
T Consensus 164 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~--~~~~~~~------ 235 (277)
T cd05062 164 GMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNE--QVLRFVM------ 235 (277)
T ss_pred CCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHH--HHHHHHH------
Confidence 88875433222111223456889999999998899999999999999999999 78898653211 1111110
Q ss_pred cceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 581 VMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.... ...+..++.++.+++.+||+.||++|||+.|+
T Consensus 236 -----~~~~-------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~ 271 (277)
T cd05062 236 -----EGGL-------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEI 271 (277)
T ss_pred -----cCCc-------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 0000 01122356679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh |
| >cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-24 Score=213.09 Aligned_cols=190 Identities=23% Similarity=0.343 Sum_probs=132.7
Q ss_pred hcCCCcccccccCCccEEEEEEec-----------------CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcce
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH-----------------YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIK 487 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~-----------------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~ 487 (628)
.++|...+.||+|+||.||+|+.. .+..||+|++.... ....+.+.+|++++++++||||++
T Consensus 4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~ 83 (296)
T cd05051 4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR 83 (296)
T ss_pred hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence 467889999999999999998753 12468999987543 345677899999999999999999
Q ss_pred eeeeccCCCcc---------------------------------------------------------------------
Q 037488 488 IISSCSNDDFK--------------------------------------------------------------------- 498 (628)
Q Consensus 488 l~~~~~~~~~~--------------------------------------------------------------------- 498 (628)
++++|..++..
T Consensus 84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Nili 163 (296)
T cd05051 84 LLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLV 163 (296)
T ss_pred EEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchhceee
Confidence 99876432100
Q ss_pred --------ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh--CCCCCCcccCCCcc
Q 037488 499 --------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT--RKKPTDEIFSGEMT 568 (628)
Q Consensus 499 --------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt--g~~p~~~~~~~~~~ 568 (628)
+|||+++...............+|..|||||++.++.++.++|||||||++|||++ |..||..... ..
T Consensus 164 ~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~--~~ 241 (296)
T cd05051 164 GKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTD--QQ 241 (296)
T ss_pred cCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcCh--HH
Confidence 38998876543322222334567889999999998899999999999999999998 6778754321 11
Q ss_pred HHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 569 LKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
............ ........+..++.++.+++.+||+.||++|||+.||
T Consensus 242 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el 290 (296)
T cd05051 242 VIENAGHFFRDD-----------GRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREI 290 (296)
T ss_pred HHHHHHhccccc-----------cccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHH
Confidence 111111100000 0000011122345679999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke |
| >cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-24 Score=214.92 Aligned_cols=176 Identities=20% Similarity=0.281 Sum_probs=126.2
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||.||+|+. .+++.||+|+++.. .....+.+.+|+.++.++ +|||||++++++..++..
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~ 80 (329)
T cd05618 1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG 80 (329)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence 3689999999999987 56899999999753 223445677899988877 899999999876543211
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+++....... .....+|
T Consensus 81 ~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~--~~~~~~g 158 (329)
T cd05618 81 GDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD--TTSTFCG 158 (329)
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCC--ccccccC
Confidence 49999985432221 1234579
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCC---ccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGE---MTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
|+.|+|||++.+..++.++|||||||++|||++|+.||....... .....+..... .. ....
T Consensus 159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i-----------~~----~~~~ 223 (329)
T cd05618 159 TPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVI-----------LE----KQIR 223 (329)
T ss_pred CccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHH-----------hc----CCCC
Confidence 999999999999999999999999999999999999996422111 11111111100 00 0111
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
.|...+.++.+++.+||+.||++||++
T Consensus 224 ~p~~~~~~~~~ll~~~L~~dP~~R~~~ 250 (329)
T cd05618 224 IPRSLSVKAASVLKSFLNKDPKERLGC 250 (329)
T ss_pred CCCCCCHHHHHHHHHHhcCCHHHcCCC
Confidence 233456678999999999999999985
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o |
| >KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-24 Score=224.70 Aligned_cols=178 Identities=21% Similarity=0.324 Sum_probs=132.5
Q ss_pred CCCcccccccCCccEEEEEEecC-CcEEEEEEeeccchhHHHHHHHHHHHhhccc-CCCcceeeee--------------
Q 037488 428 GFSENNLIDRGGIGYVYKRRIHY-GMEVAVKVFDLQYREAFKNFDIECDMMKHIR-HRNLIKIISS-------------- 491 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~-------------- 491 (628)
++.+.+.|.||||+.||.|+... |..||+|++-..++...+.+.+||++|++|+ |||||.+++.
T Consensus 38 ~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~Ev 117 (738)
T KOG1989|consen 38 RVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEV 117 (738)
T ss_pred EEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEE
Confidence 34567899999999999999854 4999999997777778888999999999997 9999999882
Q ss_pred ------ccCCCc---------------------------------------------------------ccccccccccc
Q 037488 492 ------CSNDDF---------------------------------------------------------KADFGMAKPLL 508 (628)
Q Consensus 492 ------~~~~~~---------------------------------------------------------~~DFGla~~~~ 508 (628)
|.++.. .||||-|....
T Consensus 118 llLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~ 197 (738)
T KOG1989|consen 118 LLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKI 197 (738)
T ss_pred EeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeCccccccccc
Confidence 222111 06999997543
Q ss_pred ccCccccc-------ccccccccccCccccc---cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcC
Q 037488 509 KEDQSLIQ-------TQTLATIGYMAPEYGR---EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLP 578 (628)
Q Consensus 509 ~~~~~~~~-------~~~~gt~~y~aPE~~~---~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~ 578 (628)
........ -....|+-|+|||++. +..+++|+||||+||+||-++....||++...
T Consensus 198 ~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~-------------- 263 (738)
T KOG1989|consen 198 LSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGK-------------- 263 (738)
T ss_pred CCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcc--------------
Confidence 32211000 0123799999999874 56799999999999999999999999986321
Q ss_pred CccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 579 ISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+++. .+ .++..+..+..+++||..||+.||++||++-||
T Consensus 264 ---laIlng----~Y--~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv 304 (738)
T KOG1989|consen 264 ---LAILNG----NY--SFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQV 304 (738)
T ss_pred ---eeEEec----cc--cCCCCccHHHHHHHHHHHHhccCcccCCCHHHH
Confidence 112221 21 122224568889999999999999999997653
|
|
| >cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-24 Score=211.88 Aligned_cols=182 Identities=23% Similarity=0.410 Sum_probs=131.4
Q ss_pred cCCCcccccccCCccEEEEEEe------cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI------HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
.+|...+.||+|+||.||++.. .++..+|+|.+..........+.+|+++++.++||||+++++++..++..
T Consensus 5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 84 (280)
T cd05092 5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLM 84 (280)
T ss_pred HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEE
Confidence 4566778999999999999863 24668999998766555667899999999999999999999876432100
Q ss_pred -------------------------------------------------------------------------------c
Q 037488 499 -------------------------------------------------------------------------------A 499 (628)
Q Consensus 499 -------------------------------------------------------------------------------~ 499 (628)
+
T Consensus 85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~~~~~kL~ 164 (280)
T cd05092 85 VFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIG 164 (280)
T ss_pred EEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcCCCCEEEC
Confidence 3
Q ss_pred cccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcC
Q 037488 500 DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLP 578 (628)
Q Consensus 500 DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~ 578 (628)
|||+++...............+++.|+|||++.+..++.++|||||||++|||++ |++||....... ......
T Consensus 165 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~--~~~~~~---- 238 (280)
T cd05092 165 DFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTE--AIECIT---- 238 (280)
T ss_pred CCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHH--HHHHHH----
Confidence 8888875533222112233446788999999999999999999999999999998 899986532211 111000
Q ss_pred CccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 579 ISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
... ....+..++..+.+++.+||+.||++||++.||
T Consensus 239 -----------~~~---~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l 274 (280)
T cd05092 239 -----------QGR---ELERPRTCPPEVYAIMQGCWQREPQQRMVIKDI 274 (280)
T ss_pred -----------cCc---cCCCCCCCCHHHHHHHHHHccCChhhCCCHHHH
Confidence 000 011122356678999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory |
| >cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-23 Score=208.18 Aligned_cols=185 Identities=23% Similarity=0.336 Sum_probs=133.6
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
.+++.+.....||+|+||.||+|.. .+++.||+|.+........+.+.+|++++++++||||+++++++..++..
T Consensus 5 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 84 (268)
T cd06624 5 YEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIFM 84 (268)
T ss_pred cccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEEE
Confidence 4556666667899999999999986 56889999998766666667899999999999999999999877543311
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||++........
T Consensus 85 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~ 164 (268)
T cd06624 85 EQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINP 164 (268)
T ss_pred ecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhheecccCCC
Confidence 37777764422211
Q ss_pred ccccccccccccccCccccccCc--cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 513 SLIQTQTLATIGYMAPEYGREGR--VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
......|+..|+|||++.+.. ++.++|||||||++|||++|++||....... ...+... .
T Consensus 165 --~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~--~~~~~~~-------------~- 226 (268)
T cd06624 165 --CTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQ--AAMFKVG-------------M- 226 (268)
T ss_pred --ccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChh--hhHhhhh-------------h-
Confidence 112345899999999987644 8899999999999999999999986532111 1111000 0
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+..++.++.+++.+||+.+|++|||+.|+
T Consensus 227 --~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l 262 (268)
T cd06624 227 --FKIHPEIPESLSAEAKNFILRCFEPDPDKRASAHDL 262 (268)
T ss_pred --hccCCCCCcccCHHHHHHHHHHcCCCchhCCCHHHH
Confidence 000111233455679999999999999999998764
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina |
| >cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-24 Score=219.77 Aligned_cols=183 Identities=22% Similarity=0.282 Sum_probs=131.8
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|...+.||+|+||.||+|+. .+|+.||+|+++... ....+.+.+|+.+++.++||||+++++++.+++..
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~ 80 (330)
T cd05601 1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM 80 (330)
T ss_pred CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence 3688899999999999999987 579999999997542 23456688999999999999999998876543211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+....... ..
T Consensus 81 e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~-~~ 159 (330)
T cd05601 81 EYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKM-VN 159 (330)
T ss_pred CCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCeECCCCCc-ee
Confidence 49999986543322 12
Q ss_pred cccccccccccCccccc------cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccc
Q 037488 516 QTQTLATIGYMAPEYGR------EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~------~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (628)
.....||+.|+|||++. +..++.++|||||||++|||++|+.||...... ......... ..
T Consensus 160 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~-----~~~~~i~~~--------~~ 226 (330)
T cd05601 160 SKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSA-----KTYNNIMNF--------QR 226 (330)
T ss_pred eecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHH-----HHHHHHHcC--------CC
Confidence 23457999999999986 456889999999999999999999999653221 111111100 00
Q ss_pred cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ...+.....+.++.+++.+|++ +|++|||+.++
T Consensus 227 ~----~~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~~l 260 (330)
T cd05601 227 F----LKFPEDPKVSSDFLDLIQSLLC-GQKERLGYEGL 260 (330)
T ss_pred c----cCCCCCCCCCHHHHHHHHHHcc-ChhhCCCHHHH
Confidence 0 0011112345678999999998 99999998763
|
Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor |
| >cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-23 Score=214.11 Aligned_cols=175 Identities=17% Similarity=0.209 Sum_probs=128.0
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc----
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~---- 498 (628)
+|...+.||+|+||.||+|+. .+++.||+|+++... ....+.+..|.+++..+ +||+|+++++++..++..
T Consensus 1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~ 80 (323)
T cd05616 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM 80 (323)
T ss_pred CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence 477889999999999999987 568899999997532 22345567788888877 588999888776543211
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++...... ...
T Consensus 81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~--~~~ 158 (323)
T cd05616 81 EYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDG--VTT 158 (323)
T ss_pred cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCceecCCCC--Ccc
Confidence 4999998543222 122
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...+||+.|||||++.+..++.++|||||||++|||+||+.||...... ........ . .
T Consensus 159 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~-----~~~~~i~~------------~----~ 217 (323)
T cd05616 159 KTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED-----ELFQSIME------------H----N 217 (323)
T ss_pred ccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHH-----HHHHHHHh------------C----C
Confidence 3457999999999999999999999999999999999999999753211 11111000 0 0
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
...+...+.++.+++.+|++.||++|+++
T Consensus 218 ~~~p~~~s~~~~~li~~~l~~~p~~R~~~ 246 (323)
T cd05616 218 VAYPKSMSKEAVAICKGLMTKHPGKRLGC 246 (323)
T ss_pred CCCCCcCCHHHHHHHHHHcccCHHhcCCC
Confidence 11222346678999999999999999986
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and |
| >cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-24 Score=217.49 Aligned_cols=172 Identities=20% Similarity=0.280 Sum_probs=127.1
Q ss_pred cccccCCccEEEEEEe----cCCcEEEEEEeeccch--hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--------
Q 037488 433 NLIDRGGIGYVYKRRI----HYGMEVAVKVFDLQYR--EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~----~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-------- 498 (628)
+.||+|+||.||+++. .+|+.||+|+++.... .....+.+|++++++++||||+++++++..++..
T Consensus 2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~ 81 (318)
T cd05582 2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR 81 (318)
T ss_pred ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence 5799999999999874 3588999999975432 2345677899999999999999998876543211
Q ss_pred ----------------------------------------------------------ccccccccccccCccccccccc
Q 037488 499 ----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTL 520 (628)
Q Consensus 499 ----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~ 520 (628)
+|||+++...... .......
T Consensus 82 ~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~ 159 (318)
T cd05582 82 GGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHE--KKAYSFC 159 (318)
T ss_pred CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCC--Cceeccc
Confidence 3999998653321 1223457
Q ss_pred ccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhch
Q 037488 521 ATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600 (628)
Q Consensus 521 gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (628)
||+.|+|||++.+..++.++|||||||++|||++|+.||..... ......... .. ...+
T Consensus 160 g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~-----~~~~~~i~~------------~~----~~~p 218 (318)
T cd05582 160 GTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDR-----KETMTMILK------------AK----LGMP 218 (318)
T ss_pred CChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCH-----HHHHHHHHc------------CC----CCCC
Confidence 99999999999988899999999999999999999999965321 111111100 00 1122
Q ss_pred hhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 601 GQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 601 ~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
...+.++.+++.+||+.||++||++.+
T Consensus 219 ~~~~~~~~~li~~~l~~~P~~R~~a~~ 245 (318)
T cd05582 219 QFLSPEAQSLLRALFKRNPANRLGAGP 245 (318)
T ss_pred CCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence 234567899999999999999999765
|
Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate |
| >cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-24 Score=208.14 Aligned_cols=181 Identities=24% Similarity=0.385 Sum_probs=131.6
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
.++|...+.||+|+||.||+|...+++.||+|.++.... ..+.+.+|++++++++||||+++++++..+...
T Consensus 5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 83 (261)
T cd05068 5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTM-DPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELM 83 (261)
T ss_pred hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcc-cHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecc
Confidence 456888899999999999999887778899999875432 346688999999999999999999876543211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++...... .....
T Consensus 84 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~ 162 (261)
T cd05068 84 KYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDI-YEARE 162 (261)
T ss_pred cCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCc-ccccC
Confidence 3999888654221 11111
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...++..|+|||++.+..++.++|||||||++|||+| |+.||.+.... .....+.. .. .
T Consensus 163 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~--~~~~~~~~------------~~------~ 222 (261)
T cd05068 163 GAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNA--EVLQQVDQ------------GY------R 222 (261)
T ss_pred CCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHHc------------CC------C
Confidence 2234568999999999999999999999999999999 99999653211 11111100 00 0
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..++.++.+++.+||+.+|++||++.++
T Consensus 223 ~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l 254 (261)
T cd05068 223 MPCPPGCPKELYDIMLDCWKEDPDDRPTFETL 254 (261)
T ss_pred CCCCCcCCHHHHHHHHHHhhcCcccCCCHHHH
Confidence 01122345679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a |
| >cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-24 Score=209.69 Aligned_cols=183 Identities=25% Similarity=0.452 Sum_probs=136.8
Q ss_pred HhhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
++..+|...+.||+|+||.||+|....++.+|+|++..........+.+|+.+++.++||||+++++++..++..
T Consensus 3 ~~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e 82 (261)
T cd05148 3 RPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITE 82 (261)
T ss_pred CcHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEe
Confidence 345678888999999999999999877999999999876555567789999999999999999999876543211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++...... ..
T Consensus 83 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~--~~ 160 (261)
T cd05148 83 LMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDV--YL 160 (261)
T ss_pred ecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccchhhcCCcc--cc
Confidence 3888887653221 11
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
.....++..|+|||+..+..++.++|||||||++|||++ |+.||......+ ....... .
T Consensus 161 ~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~--~~~~~~~------------------~ 220 (261)
T cd05148 161 SSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHE--VYDQITA------------------G 220 (261)
T ss_pred ccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHH--HHHHHHh------------------C
Confidence 223457788999999988899999999999999999998 899996532111 1111100 0
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.++
T Consensus 221 ~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l 254 (261)
T cd05148 221 YRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKAL 254 (261)
T ss_pred CcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence 0111233456779999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom |
| >cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-24 Score=216.11 Aligned_cols=184 Identities=22% Similarity=0.386 Sum_probs=131.7
Q ss_pred hcCCCcccccccCCccEEEEEEe------cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCC-
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI------HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDD- 496 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~- 496 (628)
.++|...+.||+|+||.||+|.. .+++.||+|+++... ....+.+.+|+.++.++ +||||++++++|...+
T Consensus 6 ~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~ 85 (337)
T cd05054 6 RDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGG 85 (337)
T ss_pred HHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCC
Confidence 45788899999999999999864 235789999987532 23346678899999999 8999999988653210
Q ss_pred --------------------------------------------------------------------------------
Q 037488 497 -------------------------------------------------------------------------------- 496 (628)
Q Consensus 497 -------------------------------------------------------------------------------- 496 (628)
T Consensus 86 ~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (337)
T cd05054 86 PLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDEL 165 (337)
T ss_pred CEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHH
Confidence
Q ss_pred ---c--------------------------------------------cccccccccccccCcccccccccccccccCcc
Q 037488 497 ---F--------------------------------------------KADFGMAKPLLKEDQSLIQTQTLATIGYMAPE 529 (628)
Q Consensus 497 ---~--------------------------------------------~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE 529 (628)
. .+|||+|+.+.............++..|||||
T Consensus 166 ~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE 245 (337)
T cd05054 166 YKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE 245 (337)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcH
Confidence 0 03999998764333222223345778899999
Q ss_pred ccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHH
Q 037488 530 YGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVF 608 (628)
Q Consensus 530 ~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (628)
++.+..++.++|||||||++|||++ |+.||.+....+ .+....... . ....+..++.++.
T Consensus 246 ~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~-~~~~~~~~~------------~------~~~~~~~~~~~~~ 306 (337)
T cd05054 246 SIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDE-EFCRRLKEG------------T------RMRAPEYATPEIY 306 (337)
T ss_pred HhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccH-HHHHHHhcc------------C------CCCCCccCCHHHH
Confidence 9999999999999999999999998 999996532211 111111000 0 0011223456699
Q ss_pred HHhhcccCCCcccCCCCCCC
Q 037488 609 NLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 609 ~l~~~cl~~dp~~Rpt~~ev 628 (628)
+++.+||+.+|++||++.||
T Consensus 307 ~l~~~cl~~~p~~RPs~~el 326 (337)
T cd05054 307 SIMLDCWHNNPEDRPTFSEL 326 (337)
T ss_pred HHHHHHccCChhhCcCHHHH
Confidence 99999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto |
| >cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-23 Score=207.98 Aligned_cols=183 Identities=21% Similarity=0.348 Sum_probs=132.5
Q ss_pred hcCCCcccccccCCccEEEEEEec----CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH----YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
.++|...+.||+|+||.||+|.+. +...||||.++... ......|.+|+.++++++||||+++++++..++..
T Consensus 3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~i 82 (266)
T cd05033 3 PSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMI 82 (266)
T ss_pred hHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEE
Confidence 457888999999999999999873 24579999987543 33456788999999999999999998876443211
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+++........
T Consensus 83 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~ 162 (266)
T cd05033 83 ITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEAT 162 (266)
T ss_pred EEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhcccccccc
Confidence 399999876422222
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.......++..|+|||.+.+..++.++|||||||++|||++ |..||...... .........
T Consensus 163 ~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~--~~~~~~~~~---------------- 224 (266)
T cd05033 163 YTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQ--DVIKAVEDG---------------- 224 (266)
T ss_pred eeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHH--HHHHHHHcC----------------
Confidence 12223346788999999998899999999999999999998 99998653211 111111000
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+.+..++.++.+++.+||+.+|++||++.||
T Consensus 225 --~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei 258 (266)
T cd05033 225 --YRLPPPMDCPSALYQLMLDCWQKDRNERPTFSQI 258 (266)
T ss_pred --CCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence 0011123456679999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment |
| >cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-23 Score=209.22 Aligned_cols=180 Identities=23% Similarity=0.320 Sum_probs=133.3
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
++|+..+.||+|+||.||+|+. .+++.||+|.+.... ......+.+|++++++++||||+++++++.++...
T Consensus 1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~ 80 (274)
T cd06609 1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEY 80 (274)
T ss_pred ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEe
Confidence 3678889999999999999987 568999999987543 34456788999999999999999999876543211
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||+++...... ......
T Consensus 81 ~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~--~~~~~~ 158 (274)
T cd06609 81 CGGGSCLDLLKPGKLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTM--SKRNTF 158 (274)
T ss_pred eCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccceeecccc--cccccc
Confidence 3899887654321 112345
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhc
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVI 599 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (628)
.|+..|+|||++.+..++.++|||||||++|||+||+.||....+.. ....... . .. +..
T Consensus 159 ~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~--~~~~~~~----~----~~----------~~~ 218 (274)
T cd06609 159 VGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMR--VLFLIPK----N----NP----------PSL 218 (274)
T ss_pred cCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHH--HHHHhhh----c----CC----------CCC
Confidence 78999999999999889999999999999999999999996532211 0000000 0 00 000
Q ss_pred hhh-hHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 600 KGQ-CVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 600 ~~~-~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.. ++.++.+++.+||..||++|||++++
T Consensus 219 ~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~i 248 (274)
T cd06609 219 EGNKFSKPFKDFVSLCLNKDPKERPSAKEL 248 (274)
T ss_pred cccccCHHHHHHHHHHhhCChhhCcCHHHH
Confidence 111 45568999999999999999998764
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) |
| >cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-24 Score=209.26 Aligned_cols=185 Identities=24% Similarity=0.287 Sum_probs=131.6
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.++|...+.||+|+||.||+|+. .+++.||+|+++.........+.+|+.+++.++||||+++++++..++..
T Consensus 8 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~ 87 (267)
T cd06645 8 QEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEF 87 (267)
T ss_pred HHHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEec
Confidence 35778888999999999999986 57899999999766545556688999999999999999999876432211
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||++....... .....
T Consensus 88 ~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~--~~~~~ 165 (267)
T cd06645 88 CGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATI--AKRKS 165 (267)
T ss_pred cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceeeeEccCcc--ccccc
Confidence 3899887543221 11234
Q ss_pred ccccccccCccccc---cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 519 TLATIGYMAPEYGR---EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 519 ~~gt~~y~aPE~~~---~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
..||..|+|||++. ...++.++||||+||++|||++|+.||....+.... ...... . ...+..
T Consensus 166 ~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~-~~~~~~----~---~~~~~~------ 231 (267)
T cd06645 166 FIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRAL-FLMTKS----N---FQPPKL------ 231 (267)
T ss_pred ccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhhH-Hhhhcc----C---CCCCcc------
Confidence 57999999999874 456899999999999999999999998653221110 000000 0 000000
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....++..+.+++.+||+.||++|||+++|
T Consensus 232 --~~~~~~~~~~~~li~~~l~~~P~~R~~~~~l 262 (267)
T cd06645 232 --KDKMKWSNSFHHFVKMALTKNPKKRPTAEKL 262 (267)
T ss_pred --cccCCCCHHHHHHHHHHccCCchhCcCHHHH
Confidence 0011234568899999999999999998764
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-24 Score=212.48 Aligned_cols=182 Identities=26% Similarity=0.434 Sum_probs=132.5
Q ss_pred cCCCcccccccCCccEEEEEEe------cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI------HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
++|...+.||+|+||.||+|+. .++..+|+|.++.......+.+.+|++++++++||||+++++++..++..
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 84 (291)
T cd05094 5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIM 84 (291)
T ss_pred HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEE
Confidence 4577778999999999999874 23567999998766655667789999999999999999998876432100
Q ss_pred --------------------------------------------------------------------------------
Q 037488 499 -------------------------------------------------------------------------------- 498 (628)
Q Consensus 499 -------------------------------------------------------------------------------- 498 (628)
T Consensus 85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~l 164 (291)
T cd05094 85 VFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKI 164 (291)
T ss_pred EEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEE
Confidence
Q ss_pred ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhc
Q 037488 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLL 577 (628)
Q Consensus 499 ~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~ 577 (628)
+|||+|+...............|+..|+|||++.+..++.++|||||||++|||+| |+.||....... ......
T Consensus 165 ~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~-----~~~~~~ 239 (291)
T cd05094 165 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTE-----VIECIT 239 (291)
T ss_pred CCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH-----HHHHHh
Confidence 38888876543322222234567889999999999999999999999999999999 999986532211 111100
Q ss_pred CCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 578 PISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. . ....+..++..+.+++.+||+.||++|||+++|
T Consensus 240 ~~------------~---~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v 275 (291)
T cd05094 240 QG------------R---VLERPRVCPKEVYDIMLGCWQREPQQRLNIKEI 275 (291)
T ss_pred CC------------C---CCCCCccCCHHHHHHHHHHcccChhhCcCHHHH
Confidence 00 0 001122345679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n |
| >cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-23 Score=210.31 Aligned_cols=180 Identities=22% Similarity=0.326 Sum_probs=130.5
Q ss_pred CCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---------
Q 037488 429 FSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--------- 498 (628)
|+..+.||+|+||.||+|.. .++..+|+|.+........+.+.+|+++++.++||||++++++|..+...
T Consensus 7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~ 86 (282)
T cd06643 7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAG 86 (282)
T ss_pred HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCC
Confidence 56778899999999999987 56888999999766555667789999999999999999999876543211
Q ss_pred ----------------------------------------------------------ccccccccccccCccccccccc
Q 037488 499 ----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTL 520 (628)
Q Consensus 499 ----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~ 520 (628)
+|||+++...... .......
T Consensus 87 ~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~--~~~~~~~ 164 (282)
T cd06643 87 GAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTI--QRRDSFI 164 (282)
T ss_pred CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEccccccccccccc--ccccccc
Confidence 3899887543221 1123456
Q ss_pred ccccccCccccc-----cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 521 ATIGYMAPEYGR-----EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 521 gt~~y~aPE~~~-----~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
||..|+|||++. +..++.++|||||||++|||++|++||....+.. ........ . .+
T Consensus 165 ~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~-~~~~~~~~----~-----~~-------- 226 (282)
T cd06643 165 GTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMR-VLLKIAKS----E-----PP-------- 226 (282)
T ss_pred ccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHHH-HHHHHhhc----C-----CC--------
Confidence 999999999974 3457889999999999999999999986532211 01111000 0 00
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++.+++.+||+.||++||++.++
T Consensus 227 ~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i 259 (282)
T cd06643 227 TLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQL 259 (282)
T ss_pred CCCCccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence 011122345679999999999999999998764
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. |
| >cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-24 Score=221.52 Aligned_cols=183 Identities=21% Similarity=0.263 Sum_probs=127.5
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|...+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|++++++++|||||++++++.+++..
T Consensus 1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~ 80 (377)
T cd05629 1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM 80 (377)
T ss_pred CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence 4688889999999999999986 679999999986532 23456688999999999999999998876543311
Q ss_pred --------------------------------------------------------------ccccccccccccCcc---
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQS--- 513 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~--- 513 (628)
+|||+|+........
T Consensus 81 E~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~ 160 (377)
T cd05629 81 EFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYY 160 (377)
T ss_pred eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeecccccccccccccccc
Confidence 499999643211000
Q ss_pred ------------------------------------------cccccccccccccCccccccCccCcccchhhHhHHHHH
Q 037488 514 ------------------------------------------LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIE 551 (628)
Q Consensus 514 ------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e 551 (628)
......+||+.|||||++.+..|+.++||||+||++||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~e 240 (377)
T cd05629 161 QKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFE 240 (377)
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhh
Confidence 00012479999999999999999999999999999999
Q ss_pred HhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCC---CCCC
Q 037488 552 TFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERV---NAKE 627 (628)
Q Consensus 552 ~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp---t~~e 627 (628)
|++|++||....... ....... ... .+ ..+.....+.++.+++.+|+. +|.+|+ ++.|
T Consensus 241 lltG~~Pf~~~~~~~-~~~~i~~--~~~--------~~------~~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~ 301 (377)
T cd05629 241 CLIGWPPFCSENSHE-TYRKIIN--WRE--------TL------YFPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHE 301 (377)
T ss_pred hhcCCCCCCCCCHHH-HHHHHHc--cCC--------cc------CCCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHH
Confidence 999999996532211 0111000 000 00 000111235668999999998 777764 6544
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of |
| >cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-23 Score=207.49 Aligned_cols=183 Identities=22% Similarity=0.273 Sum_probs=132.7
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|...+.||+|+||.||+|.. .+|+.+|||.+... .......+.+|+++++.++||||+++++++..++..
T Consensus 2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~ 81 (267)
T cd08229 2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL 81 (267)
T ss_pred chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence 4678889999999999999986 67999999988643 233456788999999999999999998876542210
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+++.......
T Consensus 82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~ 161 (267)
T cd08229 82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT 161 (267)
T ss_pred EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhccccCCc
Confidence 38888876533221
Q ss_pred ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 513 SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
......|+.+|+|||++.+..++.++|||||||++|||++|+.||.....+ ...+..... .
T Consensus 162 --~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~~~~~~-----~--------- 222 (267)
T cd08229 162 --AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN---LYSLCKKIE-----Q--------- 222 (267)
T ss_pred --ccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccch---HHHHhhhhh-----c---------
Confidence 112356999999999999888999999999999999999999998642211 111111100 0
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+...+.++.+++.+||+.||++||||.+|
T Consensus 223 ~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i 258 (267)
T cd08229 223 CDYPPLPSDHYSEELRQLVNMCINPDPEKRPDITYV 258 (267)
T ss_pred CCCCCCCcccccHHHHHHHHHhcCCCcccCCCHHHH
Confidence 000011122356679999999999999999998753
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. |
| >cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-23 Score=210.14 Aligned_cols=182 Identities=21% Similarity=0.393 Sum_probs=131.3
Q ss_pred cCCCcccccccCCccEEEEEEe-----cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc---
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-----HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--- 497 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--- 497 (628)
.+|+..+.||+|+||.||+|.. ..++.||+|.+.... ......+.+|++++++++||||+++++++..++.
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 84 (283)
T cd05090 5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCM 84 (283)
T ss_pred hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEE
Confidence 4577778999999999999974 246789999997432 3445678899999999999999999886432110
Q ss_pred --------------------------------------------------------------------------------
Q 037488 498 -------------------------------------------------------------------------------- 497 (628)
Q Consensus 498 -------------------------------------------------------------------------------- 497 (628)
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~~~~~k 164 (283)
T cd05090 85 LFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVK 164 (283)
T ss_pred EEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcCCCcEE
Confidence
Q ss_pred cccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhh
Q 037488 498 KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDL 576 (628)
Q Consensus 498 ~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~ 576 (628)
.+|||+++...............++..|+|||++.++.++.++|||||||++|||++ |..||.+..+ .........
T Consensus 165 l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~--~~~~~~~~~- 241 (283)
T cd05090 165 ISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSN--QEVIEMVRK- 241 (283)
T ss_pred eccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHHc-
Confidence 039999886543322222234457788999999998899999999999999999999 9999865321 111111100
Q ss_pred cCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 577 LPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. ....+..++.++.+++.+||+.||++||++.+|
T Consensus 242 --~~---------------~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i 276 (283)
T cd05090 242 --RQ---------------LLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDI 276 (283)
T ss_pred --CC---------------cCCCCCCCCHHHHHHHHHHcccCcccCcCHHHH
Confidence 00 011223456679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-23 Score=210.10 Aligned_cols=183 Identities=21% Similarity=0.250 Sum_probs=136.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
..+|...+.||+|+||.||+|.. .+++.||+|.+........+.+.+|+.+++.++||||+++++++..++..
T Consensus 18 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~ 97 (297)
T cd06656 18 KKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 97 (297)
T ss_pred hhhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecc
Confidence 46788899999999999999986 67999999999765555556788999999999999999999987543311
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||+++....... .....
T Consensus 98 ~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~--~~~~~ 175 (297)
T cd06656 98 LAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTM 175 (297)
T ss_pred cCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEccCCcc--CcCcc
Confidence 39998876433221 12335
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhc
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVI 599 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (628)
.|++.|+|||+..+..++.++|||||||++|+|++|+.||....+...... . . ... ......
T Consensus 176 ~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~-------------~-~--~~~--~~~~~~ 237 (297)
T cd06656 176 VGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYL-------------I-A--TNG--TPELQN 237 (297)
T ss_pred cCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheee-------------e-c--cCC--CCCCCC
Confidence 689999999999988899999999999999999999999965322110000 0 0 000 000111
Q ss_pred hhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 600 KGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 600 ~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+...+..+.+++.+||+.||++||++.++
T Consensus 238 ~~~~~~~~~~li~~~l~~~p~~Rps~~~i 266 (297)
T cd06656 238 PERLSAVFRDFLNRCLEMDVDRRGSAKEL 266 (297)
T ss_pred ccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence 22345668899999999999999998764
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-24 Score=209.65 Aligned_cols=183 Identities=21% Similarity=0.260 Sum_probs=131.8
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCC-----
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDD----- 496 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~----- 496 (628)
.+++.|+..+.||+|+||.||+|.. .+++.||+|++..... ....+.+|+.+++++ +||||+++++++...+
T Consensus 3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~ 81 (272)
T cd06637 3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD 81 (272)
T ss_pred ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCc-cHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCC
Confidence 3567888899999999999999987 5688999999875432 335678899999998 7999999998875321
Q ss_pred -cc--------------------------------------------------------------------ccccccccc
Q 037488 497 -FK--------------------------------------------------------------------ADFGMAKPL 507 (628)
Q Consensus 497 -~~--------------------------------------------------------------------~DFGla~~~ 507 (628)
.. +|||+++..
T Consensus 82 ~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~ 161 (272)
T cd06637 82 DQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQL 161 (272)
T ss_pred cEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCceec
Confidence 00 399998864
Q ss_pred cccCcccccccccccccccCccccc-----cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccc
Q 037488 508 LKEDQSLIQTQTLATIGYMAPEYGR-----EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVM 582 (628)
Q Consensus 508 ~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 582 (628)
.... .......|+..|+|||++. +..|+.++|||||||++|||++|+.||....+.. ...... .
T Consensus 162 ~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~----~~~~~~-~---- 230 (272)
T cd06637 162 DRTV--GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMR----ALFLIP-R---- 230 (272)
T ss_pred cccc--ccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHH----HHHHHh-c----
Confidence 3221 1223457999999999986 3458899999999999999999999996532211 111000 0
Q ss_pred eeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 583 KVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+..++.++.+++.+||..||.+|||+.|+
T Consensus 231 ----------~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i 266 (272)
T cd06637 231 ----------NPAPRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQL 266 (272)
T ss_pred ----------CCCCCCCCCCcCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 000001112345678999999999999999998764
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ |
| >PHA03207 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-23 Score=218.14 Aligned_cols=198 Identities=19% Similarity=0.109 Sum_probs=131.8
Q ss_pred hcCCCcccccccCCccEEEEEEe---cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI---HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~---~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
...|...+.||+|+||.||+|.. ..++.||+|.+... +...+|++++++++|||||++++++..+...
T Consensus 91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~ 165 (392)
T PHA03207 91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVM 165 (392)
T ss_pred cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEe
Confidence 45799999999999999999875 34678999988643 2346799999999999999998766432211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|+............
T Consensus 166 e~~~~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~ 245 (392)
T PHA03207 166 PKYKCDLFTYVDRSGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCY 245 (392)
T ss_pred hhcCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccCccccccCccccccccc
Confidence 4999998654332222223
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCC--ccHHHHHHhhcCC--ccce----eecc--
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGE--MTLKHWVNDLLPI--SVMK----VVDA-- 587 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~--~~~~~~~~~~~~~--~~~~----~~~~-- 587 (628)
..+||+.|+|||++.+..|+.++||||+||++|||++|+.||.+..... ..+.......... .+.. ....
T Consensus 246 ~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 325 (392)
T PHA03207 246 GWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHF 325 (392)
T ss_pred ccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHH
Confidence 4579999999999999999999999999999999999999996543221 1111111111000 0000 0000
Q ss_pred -----cccCCcc-cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 -----HLLSQED-KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 -----~~~~~~~-~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....... .........+.++.+++.+||..||++|||+.|+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~ 372 (392)
T PHA03207 326 KQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDI 372 (392)
T ss_pred HhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHH
Confidence 0000000 0000011234568899999999999999999874
|
|
| >cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-24 Score=216.04 Aligned_cols=170 Identities=18% Similarity=0.237 Sum_probs=124.7
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||.||+|+. .+++.||||+++... ....+.+..|.+++..+ +||||+++++++..++..
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~ 80 (321)
T cd05591 1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG 80 (321)
T ss_pred CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence 3689999999999987 568899999997532 23445677899998866 899999999877543211
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+++....... .....+|
T Consensus 81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~g 158 (321)
T cd05591 81 GDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGV--TTTTFCG 158 (321)
T ss_pred CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeecccceecccCCc--ccccccc
Confidence 39999885432221 1234579
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchh
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG 601 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (628)
|+.|+|||++.+..++.++||||+||++|||++|+.||...... ........ .. ...+.
T Consensus 159 t~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~-----~~~~~i~~------------~~----~~~p~ 217 (321)
T cd05591 159 TPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNED-----DLFESILH------------DD----VLYPV 217 (321)
T ss_pred CccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHH-----HHHHHHHc------------CC----CCCCC
Confidence 99999999999999999999999999999999999999753211 11111100 00 11122
Q ss_pred hhHHHHHHHhhcccCCCcccCCCC
Q 037488 602 QCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 602 ~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
.++.++.+++.+||+.||++||++
T Consensus 218 ~~~~~~~~ll~~~L~~dp~~R~~~ 241 (321)
T cd05591 218 WLSKEAVSILKAFMTKNPNKRLGC 241 (321)
T ss_pred CCCHHHHHHHHHHhccCHHHcCCC
Confidence 345678999999999999999954
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to |
| >cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-23 Score=213.00 Aligned_cols=175 Identities=17% Similarity=0.199 Sum_probs=127.4
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCC-CcceeeeeccCCCcc----
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHR-NLIKIISSCSNDDFK---- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~-niv~l~~~~~~~~~~---- 498 (628)
+|...+.||+|+||.||+|+. .+++.||||++.... ....+.+..|++++..++|+ +|+++++++..++..
T Consensus 1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~ 80 (324)
T cd05587 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM 80 (324)
T ss_pred CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence 478889999999999999987 568899999997532 23456678899999999765 577777765432211
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++....... ..
T Consensus 81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~--~~ 158 (324)
T cd05587 81 EYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGK--TT 158 (324)
T ss_pred cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCC--ce
Confidence 39999875322211 12
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...+||+.|+|||++.+..++.++||||+||++|||+||+.||...... ........ . .
T Consensus 159 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~-----~~~~~i~~------------~----~ 217 (324)
T cd05587 159 RTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDED-----ELFQSIME------------H----N 217 (324)
T ss_pred eeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH-----HHHHHHHc------------C----C
Confidence 3457999999999999999999999999999999999999999753211 11111000 0 0
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
...+...+.++.+++.+||..||++|+++
T Consensus 218 ~~~~~~~~~~~~~li~~~l~~~P~~R~~~ 246 (324)
T cd05587 218 VSYPKSLSKEAVSICKGLLTKHPAKRLGC 246 (324)
T ss_pred CCCCCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence 11222345678999999999999999986
|
Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory |
| >cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-23 Score=206.06 Aligned_cols=175 Identities=21% Similarity=0.376 Sum_probs=127.2
Q ss_pred ccccCCccEEEEEEe---cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----------
Q 037488 434 LIDRGGIGYVYKRRI---HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---------- 498 (628)
Q Consensus 434 ~ig~G~~g~V~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---------- 498 (628)
.||+|+||.||+|.+ .+++.+|+|+++... ....+.+.+|+.+++.++||||+++++++..+...
T Consensus 2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~ 81 (257)
T cd05116 2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEAESWMLVMELAELGP 81 (257)
T ss_pred cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCcEEEEecCCCCc
Confidence 589999999999964 357889999986542 33456789999999999999999999987543211
Q ss_pred -------------------------------------------------------ccccccccccccCccc-cccccccc
Q 037488 499 -------------------------------------------------------ADFGMAKPLLKEDQSL-IQTQTLAT 522 (628)
Q Consensus 499 -------------------------------------------------------~DFGla~~~~~~~~~~-~~~~~~gt 522 (628)
+|||+++......... ......++
T Consensus 82 L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~ 161 (257)
T cd05116 82 LNKFLQKNKHVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWP 161 (257)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCC
Confidence 3999988654332211 11223456
Q ss_pred ccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchh
Q 037488 523 IGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG 601 (628)
Q Consensus 523 ~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (628)
..|+|||.+.+..++.++|||||||++|||++ |+.||...... ........ . .....+.
T Consensus 162 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~--~~~~~i~~------------~------~~~~~~~ 221 (257)
T cd05116 162 VKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGN--EVTQMIES------------G------ERMECPQ 221 (257)
T ss_pred ccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHC------------C------CCCCCCC
Confidence 89999999988889999999999999999998 99999753221 11111110 0 0112233
Q ss_pred hhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 602 QCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 602 ~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.++.++.+++.+||+.||++||++++|
T Consensus 222 ~~~~~l~~li~~~~~~~p~~Rp~~~~i 248 (257)
T cd05116 222 RCPPEMYDLMKLCWTYGVDERPGFAVV 248 (257)
T ss_pred CCCHHHHHHHHHHhccCchhCcCHHHH
Confidence 466779999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio |
| >cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-23 Score=206.54 Aligned_cols=176 Identities=24% Similarity=0.391 Sum_probs=125.0
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------------ 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------------ 498 (628)
+.||+|+||.||+|.. .+++.||+|.+.... .+....+.+|++++++++||||++++++|..+...
T Consensus 1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L 80 (252)
T cd05084 1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF 80 (252)
T ss_pred CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence 3689999999999987 579999999886432 33456789999999999999999999987543311
Q ss_pred -------------------------------------------------------ccccccccccccCcccccccccccc
Q 037488 499 -------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLATI 523 (628)
Q Consensus 499 -------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt~ 523 (628)
+|||+++...............++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~ 160 (252)
T cd05084 81 LTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPV 160 (252)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCce
Confidence 3888887543211111111112356
Q ss_pred cccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhh
Q 037488 524 GYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQ 602 (628)
Q Consensus 524 ~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (628)
.|+|||++.++.++.++||||+||++|||++ |..||....... ....... . .....+..
T Consensus 161 ~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~--~~~~~~~------------~------~~~~~~~~ 220 (252)
T cd05084 161 KWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQ--TREAIEQ------------G------VRLPCPEL 220 (252)
T ss_pred eecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHH--HHHHHHc------------C------CCCCCccc
Confidence 7999999999999999999999999999998 888986432111 1111000 0 00112223
Q ss_pred hHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 603 CVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 603 ~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
++.++.+++.+||+.||++|||+.||
T Consensus 221 ~~~~~~~li~~~l~~~p~~Rps~~~~ 246 (252)
T cd05084 221 CPDAVYRLMERCWEYDPGQRPSFSTV 246 (252)
T ss_pred CCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 46679999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular |
| >cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-24 Score=207.77 Aligned_cols=179 Identities=19% Similarity=0.225 Sum_probs=132.3
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
+|+..+.||+|+||.||++.. .+++.+|+|.++.. .....+.+.+|+.+++.++||||+++++++.+++..
T Consensus 1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 80 (255)
T cd08219 1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYC 80 (255)
T ss_pred CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeC
Confidence 477889999999999999987 57899999998653 234456788999999999999999998876543211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||.++....... ...
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~--~~~ 158 (255)
T cd08219 81 DGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGA--YAC 158 (255)
T ss_pred CCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceeeccccc--ccc
Confidence 38998876533221 123
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccch
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHF 597 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (628)
...|+..|+|||++.+..++.++|||||||++|+|++|+.||..... .......... . ..
T Consensus 159 ~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~-----~~~~~~~~~~------------~---~~ 218 (255)
T cd08219 159 TYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSW-----KNLILKVCQG------------S---YK 218 (255)
T ss_pred cccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCH-----HHHHHHHhcC------------C---CC
Confidence 45699999999999988899999999999999999999999965211 1111111000 0 00
Q ss_pred hchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 598 VIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 598 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+..++..+.+++.+||+.||++|||+.|+
T Consensus 219 ~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~i 249 (255)
T cd08219 219 PLPSHYSYELRSLIKQMFKRNPRSRPSATTI 249 (255)
T ss_pred CCCcccCHHHHHHHHHHHhCCcccCCCHHHH
Confidence 1122345568999999999999999998764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati |
| >cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-23 Score=209.18 Aligned_cols=178 Identities=20% Similarity=0.286 Sum_probs=128.3
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.|+..+.||+|+||.||+|.. .+++.||||.+.... ......+.+|+.++++++|++|+++++++..++..
T Consensus 1 ~f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e 80 (285)
T cd05630 1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT 80 (285)
T ss_pred CceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEE
Confidence 367778999999999999987 679999999986532 22235577899999999999999998876543211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||++........
T Consensus 81 ~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~--- 157 (285)
T cd05630 81 LMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT--- 157 (285)
T ss_pred ecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccceeecCCCcc---
Confidence 39998875432211
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
.....||..|+|||++.+..++.++||||+||++|||++|+.||....... .... .... ....
T Consensus 158 ~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~-~~~~-~~~~--------~~~~------- 220 (285)
T cd05630 158 IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI-KREE-VERL--------VKEV------- 220 (285)
T ss_pred ccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccc-hHHH-HHhh--------hhhh-------
Confidence 133579999999999999999999999999999999999999997532211 0000 0000 0000
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
....+..++.++.+++.+||+.||++|||+
T Consensus 221 ~~~~~~~~~~~~~~li~~~l~~~p~~R~s~ 250 (285)
T cd05630 221 QEEYSEKFSPDARSLCKMLLCKDPKERLGC 250 (285)
T ss_pred hhhcCccCCHHHHHHHHHHhhcCHHHccCC
Confidence 001122345668999999999999999993
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as |
| >cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-23 Score=206.49 Aligned_cols=183 Identities=21% Similarity=0.333 Sum_probs=132.7
Q ss_pred CCCcccccccCCccEEEEEEecCCcEEEEEEeeccc------hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 428 GFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY------REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
+|...+.||+|+||.||+|...+|+.+|||.++... .+....+.+|++++++++|+||++++++|.+++..
T Consensus 1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv 80 (265)
T cd06631 1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIF 80 (265)
T ss_pred CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEE
Confidence 467788999999999999988789999999986432 22345688999999999999999999987654321
Q ss_pred ---------------------------------------------------------------ccccccccccccC----
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKED---- 511 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~---- 511 (628)
+|||+++......
T Consensus 81 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~ 160 (265)
T cd06631 81 MEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGT 160 (265)
T ss_pred EecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhhhhcccccc
Confidence 3888887542111
Q ss_pred cccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 512 QSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
.........|+..|+|||++.+..++.++||||+||++|||++|+.||...... ........
T Consensus 161 ~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~----~~~~~~~~-------------- 222 (265)
T cd06631 161 HSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRL----AAMFYIGA-------------- 222 (265)
T ss_pred ccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChH----HHHHHhhh--------------
Confidence 011123346999999999999888999999999999999999999999643211 11100000
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..+...+.++.+++.+||+.+|++||++.|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~ 259 (265)
T cd06631 223 HRGLMPRLPDSFSAAAIDFVTSCLTRDQHERPSALQL 259 (265)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHhcCCcccCCCHHHH
Confidence 0000011223356678999999999999999998764
|
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. |
| >KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-24 Score=220.87 Aligned_cols=178 Identities=28% Similarity=0.410 Sum_probs=138.6
Q ss_pred CcccccccCCccEEEEEEe-cCC----cEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 430 SENNLIDRGGIGYVYKRRI-HYG----MEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 430 ~~~~~ig~G~~g~V~~~~~-~~~----~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
...++||+|+||+||+|.+ +.| .+||+|++... ..+....+.+|+-+|.+++|||+++|+|+|......
T Consensus 699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~~qlvtq~ 778 (1177)
T KOG1025|consen 699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLSTLQLVTQL 778 (1177)
T ss_pred hhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccchHHHHHHh
Confidence 3467899999999999986 444 46899998543 344567899999999999999999999999754321
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
.|||+|+.+..+.......
T Consensus 779 mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~ 858 (1177)
T KOG1025|consen 779 MPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAP 858 (1177)
T ss_pred cccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhhccCccccccccc
Confidence 3999999876665433333
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...-.+.|||-|.++..+|+.++|||||||.+||++| |..||+++..+++ . | +.. ...+
T Consensus 859 ~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI--~---------------d--lle-~geR 918 (1177)
T KOG1025|consen 859 GGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEI--P---------------D--LLE-KGER 918 (1177)
T ss_pred ccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHh--h---------------H--HHh-cccc
Confidence 3345678999999999999999999999999999999 8999987533221 0 1 011 1123
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
...|+.|+.+++-++.+||..|++.||++++
T Consensus 919 LsqPpiCtiDVy~~mvkCwmid~~~rp~fke 949 (1177)
T KOG1025|consen 919 LSQPPICTIDVYMVMVKCWMIDADSRPTFKE 949 (1177)
T ss_pred CCCCCCccHHHHHHHHHHhccCcccCccHHH
Confidence 5567789999999999999999999999876
|
|
| >cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-24 Score=210.14 Aligned_cols=184 Identities=24% Similarity=0.392 Sum_probs=130.4
Q ss_pred hhcCCCcccccccCCccEEEEEEec------CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 497 (628)
+.++|...+.||+|+||.||+|... .+..||+|.+.... ......|.+|+.++++++||||+++++++.+.+.
T Consensus 4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~ 83 (277)
T cd05036 4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLP 83 (277)
T ss_pred CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence 3567888999999999999999873 46789999886433 3334568999999999999999999987543211
Q ss_pred c----------------------------------------------------------------------------ccc
Q 037488 498 K----------------------------------------------------------------------------ADF 501 (628)
Q Consensus 498 ~----------------------------------------------------------------------------~DF 501 (628)
. +||
T Consensus 84 ~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~df 163 (277)
T cd05036 84 RFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADF 163 (277)
T ss_pred cEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEeccC
Confidence 0 377
Q ss_pred cccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCc
Q 037488 502 GMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPIS 580 (628)
Q Consensus 502 Gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~ 580 (628)
|+++...............++..|+|||++.+..++.++|||||||++|||++ |+.||....... .......
T Consensus 164 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~--~~~~~~~----- 236 (277)
T cd05036 164 GMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQE--VMEFVTG----- 236 (277)
T ss_pred ccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHH--HHHHHHc-----
Confidence 77775422211111122334678999999998999999999999999999997 999997532211 1111100
Q ss_pred cceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 581 VMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .....+..++.++.+++.+||+.+|++|||+.+|
T Consensus 237 -------~------~~~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~v 271 (277)
T cd05036 237 -------G------GRLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATI 271 (277)
T ss_pred -------C------CcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence 0 0011223456679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well |
| >cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=213.78 Aligned_cols=171 Identities=22% Similarity=0.254 Sum_probs=122.9
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHH-HhhcccCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECD-MMKHIRHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||+||+|+. .+|+.||||++.... ....+.+.+|.. +++.++||||+++++++..++..
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~ 80 (323)
T cd05575 1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG 80 (323)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence 4689999999999987 579999999997532 222344555554 56789999999998876443211
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+++...... ......+|
T Consensus 81 g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~g 158 (323)
T cd05575 81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHS--KTTSTFCG 158 (323)
T ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCC--CccccccC
Confidence 4999987543221 12234579
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchh
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG 601 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (628)
|+.|||||++.+..++.++|||||||++|||++|+.||.... .......... .. ...+.
T Consensus 159 t~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~-----~~~~~~~i~~------------~~----~~~~~ 217 (323)
T cd05575 159 TPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRD-----TAEMYDNILN------------KP----LRLKP 217 (323)
T ss_pred ChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCC-----HHHHHHHHHc------------CC----CCCCC
Confidence 999999999999999999999999999999999999996521 1111111110 00 11122
Q ss_pred hhHHHHHHHhhcccCCCcccCCCCC
Q 037488 602 QCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 602 ~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
..+.++.+++.+||+.||++||++.
T Consensus 218 ~~~~~~~~li~~~l~~~p~~R~~~~ 242 (323)
T cd05575 218 NISVSARHLLEGLLQKDRTKRLGAK 242 (323)
T ss_pred CCCHHHHHHHHHHhhcCHHhCCCCC
Confidence 3456789999999999999999985
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr |
| >cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-23 Score=209.97 Aligned_cols=193 Identities=19% Similarity=0.273 Sum_probs=132.8
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
++|+..+.||+|+||.||++.. .++..+|+|.++... ......+.+|++++++++||||++++++|..++..
T Consensus 1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey 80 (308)
T cd06615 1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEH 80 (308)
T ss_pred CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeec
Confidence 3688899999999999999986 578899999987542 33456688999999999999999999876543211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++..... ...
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~----~~~ 156 (308)
T cd06615 81 MDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MAN 156 (308)
T ss_pred cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCccccccc----ccc
Confidence 378877654221 123
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC-ccc--------------
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI-SVM-------------- 582 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~-~~~-------------- 582 (628)
..+|+..|+|||+..+..++.++|||||||++|||++|+.||..... .....+....... ...
T Consensus 157 ~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (308)
T cd06615 157 SFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDA--KELEAMFGRPVSEGEAKESHRPVSGHPPDSP 234 (308)
T ss_pred cCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcch--hhHHHhhcCccccccccCCcccccCCCCCcc
Confidence 45789999999999888899999999999999999999999864321 1111111110000 000
Q ss_pred ------eeecccccCCcccchhch-hhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 583 ------KVVDAHLLSQEDKHFVIK-GQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 583 ------~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..+... .. ..+..+ ...+.++++++.+||..||++|||+.||
T Consensus 235 ~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~l 284 (308)
T cd06615 235 RPMAIFELLDYIV-NE--PPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKEL 284 (308)
T ss_pred chhhHHHHHHHHh-cC--CCccCcCcccCHHHHHHHHHHccCChhhCcCHHHH
Confidence 0000000 00 000111 1245679999999999999999999874
|
Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down |
| >cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-23 Score=206.72 Aligned_cols=179 Identities=20% Similarity=0.265 Sum_probs=132.7
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
+|...+.||+|+||.||+|.. .+++.||+|.+... .......+.+|++++++++||||+++++++..++..
T Consensus 1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 80 (256)
T cd08529 1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY 80 (256)
T ss_pred CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence 477788999999999999987 57899999998643 234456788999999999999999999887543211
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++....... ..
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~--~~ 158 (256)
T cd08529 81 AENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTN--FA 158 (256)
T ss_pred CCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceeccCccc--hh
Confidence 38988876543221 12
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
....|++.|+|||+..+..++.++|||||||++|||++|+.||..... ......... .. .
T Consensus 159 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~------------~~---~ 218 (256)
T cd08529 159 NTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQ-----GALILKIIR------------GV---F 218 (256)
T ss_pred hccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHc------------CC---C
Confidence 344689999999999999999999999999999999999999964321 111111100 00 0
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+...+.++.+++.+||+.+|++||++.++
T Consensus 219 ~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l 250 (256)
T cd08529 219 PPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQL 250 (256)
T ss_pred CCCccccCHHHHHHHHHHccCCcccCcCHHHH
Confidence 01111345669999999999999999998764
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc |
| >cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-23 Score=207.58 Aligned_cols=181 Identities=24% Similarity=0.370 Sum_probs=132.1
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
.++|+..+.||+|+||.||+|...++..||+|.++.... ....+.+|+.++++++|||++++++++.+....
T Consensus 5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~ 83 (260)
T cd05070 5 RESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVSEEPIYIVTEYMS 83 (260)
T ss_pred hHHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEECCCCcEEEEEecC
Confidence 356888899999999999999887788899999875332 235688999999999999999999876432210
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+++........ ....
T Consensus 84 ~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~-~~~~ 162 (260)
T cd05070 84 KGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYT-ARQG 162 (260)
T ss_pred CCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceeeeeccCcccc-cccC
Confidence 389988765332211 1122
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccch
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHF 597 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (628)
..++..|+|||+..+.+++.++|||||||++|||++ |+.||.+.... ........ . ...
T Consensus 163 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~--~~~~~~~~------------~------~~~ 222 (260)
T cd05070 163 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNR--EVLEQVER------------G------YRM 222 (260)
T ss_pred CCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHHc------------C------CCC
Confidence 346778999999988899999999999999999999 89998653211 11111100 0 011
Q ss_pred hchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 598 VIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 598 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+...+.++.+++.+||..||++|||++++
T Consensus 223 ~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l 253 (260)
T cd05070 223 PCPQDCPISLHELMLQCWKKDPEERPTFEYL 253 (260)
T ss_pred CCCCcCCHHHHHHHHHHcccCcccCcCHHHH
Confidence 1223456679999999999999999998763
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r |
| >cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.7e-24 Score=215.63 Aligned_cols=181 Identities=22% Similarity=0.265 Sum_probs=129.0
Q ss_pred CCCcccccccCCccEEEEEEe----cCCcEEEEEEeeccc----hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc
Q 037488 428 GFSENNLIDRGGIGYVYKRRI----HYGMEVAVKVFDLQY----REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 498 (628)
+|+..+.||+|+||.||+++. .+++.||+|++.... ....+.+.+|+.+++.+ +||||+++++++..++..
T Consensus 1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~ 80 (332)
T cd05614 1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL 80 (332)
T ss_pred CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence 478889999999999999875 358899999997432 22345678899999999 599999998766543211
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+++.......
T Consensus 81 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~ 160 (332)
T cd05614 81 HLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEK 160 (332)
T ss_pred EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCccccccCC
Confidence 49999986543322
Q ss_pred ccccccccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 513 SLIQTQTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
. .....+||+.|||||++.+.. ++.++|||||||++|||+||+.||....... ...........
T Consensus 161 ~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~-~~~~~~~~~~~------------- 225 (332)
T cd05614 161 E-RTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERN-TQSEVSRRILK------------- 225 (332)
T ss_pred C-ccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCC-CHHHHHHHHhc-------------
Confidence 1 123457999999999998754 7899999999999999999999996432211 11111111100
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
.....+...+.++.+++.+||+.||++||++.
T Consensus 226 ---~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~ 257 (332)
T cd05614 226 ---CDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAG 257 (332)
T ss_pred ---CCCCCCCCCCHHHHHHHHHHcCCCHHHcCCCC
Confidence 01112234566789999999999999999654
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-23 Score=212.40 Aligned_cols=171 Identities=18% Similarity=0.206 Sum_probs=124.2
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||.||+|+. .+|+.||+|+++... ....+.+..|.+++... +||||+++++++..++..
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~ 80 (316)
T cd05620 1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG 80 (316)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence 4689999999999987 568999999997542 22345567788888754 899999998876543211
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+++...... ......+|
T Consensus 81 g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~g 158 (316)
T cd05620 81 GDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGD--NRASTFCG 158 (316)
T ss_pred CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCeecccCC--CceeccCC
Confidence 4999987532221 12244679
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchh
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG 601 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (628)
|+.|+|||++.+..++.++||||+||++|||++|+.||..... ........ .. ....+.
T Consensus 159 t~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~-----~~~~~~~~------------~~----~~~~~~ 217 (316)
T cd05620 159 TPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDE-----DELFESIR------------VD----TPHYPR 217 (316)
T ss_pred CcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH-----HHHHHHHH------------hC----CCCCCC
Confidence 9999999999999999999999999999999999999964321 11111100 00 011122
Q ss_pred hhHHHHHHHhhcccCCCcccCCCCC
Q 037488 602 QCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 602 ~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
.++.++.+++.+||+.||++||++.
T Consensus 218 ~~~~~~~~li~~~l~~dP~~R~~~~ 242 (316)
T cd05620 218 WITKESKDILEKLFERDPTRRLGVV 242 (316)
T ss_pred CCCHHHHHHHHHHccCCHHHcCCCh
Confidence 3456789999999999999999974
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I |
| >cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-23 Score=207.42 Aligned_cols=180 Identities=22% Similarity=0.312 Sum_probs=135.0
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
..|+..+.||+|+||.||+|.. .+++.||+|+++... ......+.+|++++++++||||+++++++.++...
T Consensus 4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 83 (277)
T cd06640 4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEY 83 (277)
T ss_pred HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEec
Confidence 4577788999999999999987 568999999987543 34467789999999999999999999987643311
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||++........ .....
T Consensus 84 ~~~~~L~~~i~~~~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~ 161 (277)
T cd06640 84 LGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI--KRNTF 161 (277)
T ss_pred CCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccceeccCCcc--ccccc
Confidence 38998876533221 12334
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhc
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVI 599 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (628)
.|+..|+|||++.+..++.++|||||||++|||+||+.||....+... .. .... ...+..
T Consensus 162 ~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~-----~~---------~~~~------~~~~~~ 221 (277)
T cd06640 162 VGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRV-----LF---------LIPK------NNPPTL 221 (277)
T ss_pred cCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHhH-----hh---------hhhc------CCCCCC
Confidence 689999999999988899999999999999999999999975432110 00 0000 001122
Q ss_pred hhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 600 KGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 600 ~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..++.++.+++.+||+.+|++||++.++
T Consensus 222 ~~~~~~~~~~li~~~l~~~p~~Rp~~~~i 250 (277)
T cd06640 222 TGEFSKPFKEFIDACLNKDPSFRPTAKEL 250 (277)
T ss_pred chhhhHHHHHHHHHHcccCcccCcCHHHH
Confidence 33456779999999999999999998764
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-23 Score=229.29 Aligned_cols=181 Identities=24% Similarity=0.330 Sum_probs=130.7
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|...+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|++++++++|||||++++++.+++..
T Consensus 2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM 81 (932)
T PRK13184 2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM 81 (932)
T ss_pred CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence 5789999999999999999987 569999999986432 23356789999999999999999999876432100
Q ss_pred -------------------------------------------------------------------------ccccccc
Q 037488 499 -------------------------------------------------------------------------ADFGMAK 505 (628)
Q Consensus 499 -------------------------------------------------------------------------~DFGla~ 505 (628)
+|||+|+
T Consensus 82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLiDFGLAk 161 (932)
T PRK13184 82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAI 161 (932)
T ss_pred EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEEecCcce
Confidence 3999998
Q ss_pred cccccCc----------------ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccH
Q 037488 506 PLLKEDQ----------------SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTL 569 (628)
Q Consensus 506 ~~~~~~~----------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~ 569 (628)
....... .......+||+.|||||++.+..++.++||||+||++|||+||+.||..........
T Consensus 162 ~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki~~ 241 (932)
T PRK13184 162 FKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKISY 241 (932)
T ss_pred ecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhhhh
Confidence 6521100 001123469999999999999999999999999999999999999996532211100
Q ss_pred HHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 570 KHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
. .. ..++. ........+..+.+++.+|++.||++||+.
T Consensus 242 ~----~~-------i~~P~-------~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss 279 (932)
T PRK13184 242 R----DV-------ILSPI-------EVAPYREIPPFLSQIAMKALAVDPAERYSS 279 (932)
T ss_pred h----hh-------ccChh-------hccccccCCHHHHHHHHHHccCChhhCcCH
Confidence 0 00 00000 001112345678999999999999999864
|
|
| >cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-23 Score=205.74 Aligned_cols=181 Identities=24% Similarity=0.293 Sum_probs=133.9
Q ss_pred hcCCCcccccccCCccEEEEEEec-CCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH-YGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.++|+..+.||+|+||.||+|... +++.+|+|.+..... .+.+.+|++++++++||||+++++++..+...
T Consensus 2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~ 79 (256)
T cd06612 2 EEVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEY 79 (256)
T ss_pred cccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEec
Confidence 367888999999999999999874 589999999875433 57789999999999999999999876543211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||++........ ...
T Consensus 80 ~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~--~~~ 157 (256)
T cd06612 80 CGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMA--KRN 157 (256)
T ss_pred CCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhcccCcc--ccc
Confidence 38888876533221 123
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccch
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHF 597 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (628)
...|+..|+|||++.+..++.++|||||||++|||++|+.||....+...... . ... .....
T Consensus 158 ~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~-~-------------~~~----~~~~~ 219 (256)
T cd06612 158 TVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFM-I-------------PNK----PPPTL 219 (256)
T ss_pred cccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhhh-h-------------ccC----CCCCC
Confidence 34589999999999988999999999999999999999999975332111000 0 000 00011
Q ss_pred hchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 598 VIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 598 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+...+.++.+++.+||+.||++|||+.||
T Consensus 220 ~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~i 250 (256)
T cd06612 220 SDPEKWSPEFNDFVKKCLVKDPEERPSAIQL 250 (256)
T ss_pred CchhhcCHHHHHHHHHHHhcChhhCcCHHHH
Confidence 1122345678999999999999999998764
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a |
| >cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-23 Score=206.44 Aligned_cols=185 Identities=24% Similarity=0.320 Sum_probs=135.4
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.++|...+.||+|+||.||+|.. .+++.+|+|++........+.+.+|++++++++||||+++++++..++..
T Consensus 2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~ 81 (262)
T cd06613 2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEY 81 (262)
T ss_pred ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeC
Confidence 35788889999999999999987 56889999999876555667889999999999999999999876433211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||++....... ....
T Consensus 82 ~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~--~~~~ 159 (262)
T cd06613 82 CGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATI--AKRK 159 (262)
T ss_pred CCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchhhhhhh--hccc
Confidence 3888887543221 1123
Q ss_pred cccccccccCccccccC---ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 518 QTLATIGYMAPEYGREG---RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~---~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
...|+..|+|||++.+. .++.++|||||||++|||+||++||.+..+... ......... .+
T Consensus 160 ~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~-~~~~~~~~~--------~~------- 223 (262)
T cd06613 160 SFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRA-LFLISKSNF--------PP------- 223 (262)
T ss_pred cccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhccC--------CC-------
Confidence 45689999999999877 789999999999999999999999975332111 000000000 00
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+...+.++.+++.+||..||.+|||+.+|
T Consensus 224 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i 257 (262)
T cd06613 224 PKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKL 257 (262)
T ss_pred ccccchhhhhHHHHHHHHHHcCCChhhCCCHHHH
Confidence 0011122345679999999999999999998764
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ |
| >cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-24 Score=221.71 Aligned_cols=183 Identities=20% Similarity=0.214 Sum_probs=128.3
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
.+|...+.||+|+||.||+|+. .+++.||||++.... ......+.+|++++++++||||+++++++.+++..
T Consensus 1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~ 80 (376)
T cd05598 1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM 80 (376)
T ss_pred CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEE
Confidence 3688999999999999999986 569999999996432 22345688999999999999999998876543321
Q ss_pred --------------------------------------------------------------ccccccccccccC-----
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKED----- 511 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~----- 511 (628)
+|||+|+.+....
T Consensus 81 E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~ 160 (376)
T cd05598 81 DYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYY 160 (376)
T ss_pred eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCcccccccccccc
Confidence 3999985331000
Q ss_pred ------------------------------------cccccccccccccccCccccccCccCcccchhhHhHHHHHHhhC
Q 037488 512 ------------------------------------QSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR 555 (628)
Q Consensus 512 ------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg 555 (628)
......+.+||+.|||||++.+..++.++||||+||++|||++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G 240 (376)
T cd05598 161 QKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVG 240 (376)
T ss_pred ccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhC
Confidence 00011235799999999999999999999999999999999999
Q ss_pred CCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCC---CCCC
Q 037488 556 KKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERV---NAKE 627 (628)
Q Consensus 556 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp---t~~e 627 (628)
+.||....+.+ ....... . ......+.....+.++.+++.+|+ .+|++|+ |+.|
T Consensus 241 ~~Pf~~~~~~~-----~~~~i~~--~----------~~~~~~~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~e 297 (376)
T cd05598 241 QPPFLADTPAE-----TQLKVIN--W----------ETTLHIPSQAKLSREASDLILRLC-CGAEDRLGKNGADE 297 (376)
T ss_pred CCCCCCCCHHH-----HHHHHhc--c----------CccccCCCCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHH
Confidence 99997532211 1000000 0 000001111234566889999876 5999999 6554
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. |
| >cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-24 Score=210.14 Aligned_cols=179 Identities=23% Similarity=0.335 Sum_probs=132.0
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
.|+..+.||+|+||.||+|.. .+++.||+|.++... ....+.+.+|++++++++||||+++++++..+...
T Consensus 5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 84 (277)
T cd06642 5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYL 84 (277)
T ss_pred HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEcc
Confidence 466678899999999999986 568899999987443 33456788999999999999999999877543311
Q ss_pred ----------------------------------------------------------ccccccccccccCccccccccc
Q 037488 499 ----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTL 520 (628)
Q Consensus 499 ----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~ 520 (628)
+|||+++...... .......
T Consensus 85 ~~~~L~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~--~~~~~~~ 162 (277)
T cd06642 85 GGGSALDLLKPGPLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQ--IKRNTFV 162 (277)
T ss_pred CCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccccccCcc--hhhhccc
Confidence 3888887654322 1123346
Q ss_pred ccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhch
Q 037488 521 ATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600 (628)
Q Consensus 521 gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (628)
|+..|+|||++.+..++.++|||||||++|||++|+.|+....+... .... . .. .....+
T Consensus 163 ~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~--~~~~----~--------~~------~~~~~~ 222 (277)
T cd06642 163 GTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRV--LFLI----P--------KN------SPPTLE 222 (277)
T ss_pred CcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhhH--Hhhh----h--------cC------CCCCCC
Confidence 89999999999998899999999999999999999999865322110 0000 0 00 001112
Q ss_pred hhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 601 GQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 601 ~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..++.++.+++.+||+.+|++||++.+|
T Consensus 223 ~~~~~~~~~li~~~l~~~p~~Rp~~~~i 250 (277)
T cd06642 223 GQYSKPFKEFVEACLNKDPRFRPTAKEL 250 (277)
T ss_pred cccCHHHHHHHHHHccCCcccCcCHHHH
Confidence 2345678999999999999999998764
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 |
| >cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-23 Score=210.74 Aligned_cols=184 Identities=21% Similarity=0.370 Sum_probs=131.9
Q ss_pred hcCCCcccccccCCccEEEEEEe------cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI------HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDF 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 497 (628)
.++|...+.||+|+||.||+|.. .++..||||+++... ....+.+.+|+++++++ +||||++++++|...+.
T Consensus 34 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 113 (302)
T cd05055 34 RNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGP 113 (302)
T ss_pred HHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCc
Confidence 35688889999999999999864 235679999987543 33456789999999999 79999999988754321
Q ss_pred c--------------------------------------------------------------------ccccccccccc
Q 037488 498 K--------------------------------------------------------------------ADFGMAKPLLK 509 (628)
Q Consensus 498 ~--------------------------------------------------------------------~DFGla~~~~~ 509 (628)
. +|||+++....
T Consensus 114 ~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~ 193 (302)
T cd05055 114 ILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMN 193 (302)
T ss_pred eEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCcccccccC
Confidence 1 39999886543
Q ss_pred cCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeeccc
Q 037488 510 EDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588 (628)
Q Consensus 510 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (628)
...........++..|+|||++.++.++.++||||+||++|||++ |+.||....... .+.......
T Consensus 194 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~-~~~~~~~~~------------ 260 (302)
T cd05055 194 DSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDS-KFYKLIKEG------------ 260 (302)
T ss_pred CCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchH-HHHHHHHcC------------
Confidence 322112223457788999999999999999999999999999998 999986532211 111111100
Q ss_pred ccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ....+...+.++.+++.+||+.+|++|||+.||
T Consensus 261 ~------~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~el 294 (302)
T cd05055 261 Y------RMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQI 294 (302)
T ss_pred C------cCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence 0 001112235569999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept |
| >KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-23 Score=190.29 Aligned_cols=179 Identities=20% Similarity=0.260 Sum_probs=133.3
Q ss_pred CCcccccccCCccEEEEEEe-cCCcEEEEEEeecc-chhHHHHHHHHHHHhhccc-CCCcceeeeeccCCCcc-------
Q 037488 429 FSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIR-HRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~------- 498 (628)
......+|.|+.|+|++++. .+|..+|||.+.+. ..+..+++.+.+.++.+-+ .|.||+.+|||..+...
T Consensus 94 l~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelM 173 (391)
T KOG0983|consen 94 LENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELM 173 (391)
T ss_pred hhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHH
Confidence 34456799999999999987 67999999999764 3555677888888887765 89999999998543211
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
||||++..+..... .+.
T Consensus 174 s~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkA---htr 250 (391)
T KOG0983|consen 174 STCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKA---HTR 250 (391)
T ss_pred HHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecccccceeecccc---ccc
Confidence 69999987754432 245
Q ss_pred ccccccccCcccccc---CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 519 TLATIGYMAPEYGRE---GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~---~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
..|.+.|||||.+.- ..|+.++|||||||.++|++||+.||..+..+...+....... | +.
T Consensus 251 sAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln~e-P--------P~------- 314 (391)
T KOG0983|consen 251 SAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLNEE-P--------PL------- 314 (391)
T ss_pred ccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHhcC-C--------CC-------
Confidence 679999999999863 4699999999999999999999999987644433332222110 0 11
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
.+.....++.+.+++..||++|+.+||...+
T Consensus 315 -L~~~~gFSp~F~~fv~~CL~kd~r~RP~Y~~ 345 (391)
T KOG0983|consen 315 -LPGHMGFSPDFQSFVKDCLTKDHRKRPKYNK 345 (391)
T ss_pred -CCcccCcCHHHHHHHHHHhhcCcccCcchHH
Confidence 1111125677999999999999999997654
|
|
| >cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-23 Score=210.77 Aligned_cols=128 Identities=20% Similarity=0.221 Sum_probs=98.2
Q ss_pred ccccccCCccEEEEEEec---CCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCC------------
Q 037488 432 NNLIDRGGIGYVYKRRIH---YGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD------------ 496 (628)
Q Consensus 432 ~~~ig~G~~g~V~~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------------ 496 (628)
...||+|+||.||+|+.. +++.||+|.++... ....+.+|++++++++||||+++++++....
T Consensus 6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~ 83 (317)
T cd07868 6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE 83 (317)
T ss_pred ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC
Confidence 358999999999999853 56889999986432 2245678999999999999999987653210
Q ss_pred ---------------------c-----------------------------------------------ccccccccccc
Q 037488 497 ---------------------F-----------------------------------------------KADFGMAKPLL 508 (628)
Q Consensus 497 ---------------------~-----------------------------------------------~~DFGla~~~~ 508 (628)
. .+|||+|+...
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~ 163 (317)
T cd07868 84 HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFN 163 (317)
T ss_pred CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccC
Confidence 0 03999998653
Q ss_pred ccCc-ccccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCc
Q 037488 509 KEDQ-SLIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDE 561 (628)
Q Consensus 509 ~~~~-~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~ 561 (628)
.... .......+||++|||||++.+. .|+.++||||+||++|||++|++||..
T Consensus 164 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~ 218 (317)
T cd07868 164 SPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC 218 (317)
T ss_pred CCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccC
Confidence 3211 1122345799999999998874 589999999999999999999999964
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p |
| >cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=217.11 Aligned_cols=136 Identities=22% Similarity=0.287 Sum_probs=108.2
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|+..+.||+|+||+||+|+. .+++.||||+++... ......+.+|+.++.+++||||+++++++.++...
T Consensus 1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~ 80 (363)
T cd05628 1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM 80 (363)
T ss_pred CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence 4688899999999999999986 568999999997532 23345678899999999999999998876543211
Q ss_pred --------------------------------------------------------------ccccccccccccCcc---
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQS--- 513 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~--- 513 (628)
+|||+|+.+......
T Consensus 81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~ 160 (363)
T cd05628 81 EFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFY 160 (363)
T ss_pred cCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCccccccccccccc
Confidence 499999754321100
Q ss_pred ------------------------------cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcc
Q 037488 514 ------------------------------LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEI 562 (628)
Q Consensus 514 ------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~ 562 (628)
....+.+||+.|||||++.+..|+.++|||||||++|||++|+.||...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~ 239 (363)
T cd05628 161 RNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSE 239 (363)
T ss_pred ccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCC
Confidence 0112457999999999999999999999999999999999999999753
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus |
| >cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-23 Score=212.07 Aligned_cols=177 Identities=20% Similarity=0.267 Sum_probs=127.5
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||.||+|+. .+++.||+|+++... ....+.+.+|+.++.++ +||||+++++++...+..
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~ 80 (327)
T cd05617 1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG 80 (327)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence 3689999999999987 568999999997542 23456688999999888 699999998876543211
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+++....... .....+|
T Consensus 81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~g 158 (327)
T cd05617 81 GDLMFHMQRQRKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGD--TTSTFCG 158 (327)
T ss_pred CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEeccccceeccCCCC--ceecccC
Confidence 49999985332211 1234679
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCC-ccHHHHHHhhcCCccceeecccccCCcccchhch
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGE-MTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (628)
|+.|+|||++.+..++.++||||+||++|||++|+.||....... .....+..... .. .....|
T Consensus 159 t~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~-----------~~----~~~~~p 223 (327)
T cd05617 159 TPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVI-----------LE----KPIRIP 223 (327)
T ss_pred CcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHH-----------Hh----CCCCCC
Confidence 999999999999999999999999999999999999996432211 11111111100 00 011123
Q ss_pred hhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 601 GQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 601 ~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
...+..+.+++.+||+.||++|+++.
T Consensus 224 ~~~~~~~~~li~~~L~~dP~~R~~~~ 249 (327)
T cd05617 224 RFLSVKASHVLKGFLNKDPKERLGCQ 249 (327)
T ss_pred CCCCHHHHHHHHHHhccCHHHcCCCC
Confidence 33456689999999999999999864
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways |
| >cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-23 Score=208.23 Aligned_cols=183 Identities=23% Similarity=0.325 Sum_probs=131.8
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCc----EEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGM----EVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~----~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
..+|...+.||+|+||+||+|++ .+|+ .||+|+++.. .....+.+.+|+.+++.++||||++++++|......
T Consensus 6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~l 85 (279)
T cd05109 6 ETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTSTVQL 85 (279)
T ss_pred hhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCCCcEE
Confidence 45788889999999999999985 4454 4899998653 333456788999999999999999999877432210
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+++........
T Consensus 86 ~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~ 165 (279)
T cd05109 86 VTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETE 165 (279)
T ss_pred EEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCceeecccccce
Confidence 499999866432221
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.......++..|+|||+..+..++.++|||||||++|||++ |+.||+..... ....+....
T Consensus 166 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~--~~~~~~~~~---------------- 227 (279)
T cd05109 166 YHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAR--EIPDLLEKG---------------- 227 (279)
T ss_pred eecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHH--HHHHHHHCC----------------
Confidence 11222346788999999998899999999999999999998 89998653211 111111110
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++||++.|+
T Consensus 228 --~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l 261 (279)
T cd05109 228 --ERLPQPPICTIDVYMIMVKCWMIDSECRPRFREL 261 (279)
T ss_pred --CcCCCCccCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 0011122356678999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve |
| >cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-23 Score=209.24 Aligned_cols=183 Identities=20% Similarity=0.273 Sum_probs=133.0
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.+.|+..+.||.|+||.||+|+. .+++.||+|.+........+.+.+|++++++++||||+++++++..+...
T Consensus 11 ~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 90 (292)
T cd06644 11 NEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEF 90 (292)
T ss_pred chhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEec
Confidence 36688889999999999999987 56899999999876666677889999999999999999999876432210
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++...... ....
T Consensus 91 ~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~--~~~~ 168 (292)
T cd06644 91 CPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTL--QRRD 168 (292)
T ss_pred CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccceeccccc--cccc
Confidence 3899887532221 1123
Q ss_pred cccccccccCccccc-----cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 518 QTLATIGYMAPEYGR-----EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~-----~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
...|+..|+|||++. ...++.++|||||||++|||++|++||....+.. ......... .
T Consensus 169 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~-----~~~~~~~~~-----~------ 232 (292)
T cd06644 169 SFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR-----VLLKIAKSE-----P------ 232 (292)
T ss_pred eecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHH-----HHHHHhcCC-----C------
Confidence 456899999999985 3447889999999999999999999986532211 111100000 0
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++||++.|+
T Consensus 233 --~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i 266 (292)
T cd06644 233 --PTLSQPSKWSMEFRDFLKTALDKHPETRPSAAQL 266 (292)
T ss_pred --ccCCCCcccCHHHHHHHHHHhcCCcccCcCHHHH
Confidence 0011122345668999999999999999998764
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. |
| >cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-23 Score=207.63 Aligned_cols=180 Identities=25% Similarity=0.364 Sum_probs=131.5
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
.+|...+.||+|+||.||+|.. .+++.||+|+++... .....+.+|++++++++||||++++++|..++..
T Consensus 6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 84 (263)
T cd05052 6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFM 84 (263)
T ss_pred HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCc-hHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeC
Confidence 4577788999999999999987 568899999987543 2346788999999999999999999887543211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++....... ....
T Consensus 85 ~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~-~~~~ 163 (263)
T cd05052 85 TYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY-TAHA 163 (263)
T ss_pred CCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCcccccccccee-eccC
Confidence 38998876533211 1112
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...++..|+|||++.+..++.++|||||||++|||++ |..||..... ........ .. ..
T Consensus 164 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~-----~~~~~~~~---------~~------~~ 223 (263)
T cd05052 164 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL-----SQVYELLE---------KG------YR 223 (263)
T ss_pred CCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCH-----HHHHHHHH---------CC------CC
Confidence 2335678999999999999999999999999999998 9999865321 11111100 00 01
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..++.++.+++.+||+.||++|||+.++
T Consensus 224 ~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l 255 (263)
T cd05052 224 MERPEGCPPKVYELMRACWQWNPSDRPSFAEI 255 (263)
T ss_pred CCCCCCCCHHHHHHHHHHccCCcccCCCHHHH
Confidence 11223456779999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays |
| >cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-23 Score=206.76 Aligned_cols=181 Identities=22% Similarity=0.332 Sum_probs=132.8
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
.++|...+.||+|+||.||+|...+++.||+|.+..... ....+.+|+.++++++||||+++++++..+...
T Consensus 5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~ 83 (260)
T cd05067 5 RETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM-SPEAFLAEANLMKQLQHPRLVRLYAVVTQEPIYIITEYME 83 (260)
T ss_pred hHHceeeeeeccCccceEEeeecCCCceEEEEEecCCCC-cHHHHHHHHHHHHhcCCcCeeeEEEEEccCCcEEEEEcCC
Confidence 457888899999999999999988889999999875432 345788999999999999999999876432110
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+++....... .....
T Consensus 84 ~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~-~~~~~ 162 (260)
T cd05067 84 NGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEY-TAREG 162 (260)
T ss_pred CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcceeecCCCCc-ccccC
Confidence 38888876532211 11123
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccch
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHF 597 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (628)
..++..|+|||++.+..++.++|||||||++|||++ |+.||.+.... ......... ...
T Consensus 163 ~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--~~~~~~~~~------------------~~~ 222 (260)
T cd05067 163 AKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNP--EVIQNLERG------------------YRM 222 (260)
T ss_pred CcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChH--HHHHHHHcC------------------CCC
Confidence 356788999999998899999999999999999999 99999753211 111111000 001
Q ss_pred hchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 598 VIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 598 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.+...+.++.+++.+||+.+|++|||++++
T Consensus 223 ~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l 253 (260)
T cd05067 223 PRPDNCPEELYELMRLCWKEKPEERPTFEYL 253 (260)
T ss_pred CCCCCCCHHHHHHHHHHccCChhhCCCHHHH
Confidence 1222345679999999999999999998763
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr |
| >cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-23 Score=205.01 Aligned_cols=182 Identities=19% Similarity=0.269 Sum_probs=129.2
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-----hhHHHHHHHHHHHhhcccCCCcceeeeeccCCC--cc
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-----REAFKNFDIECDMMKHIRHRNLIKIISSCSNDD--FK 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~ 498 (628)
.+|...+.||+|+||.||+|.. .+++.||+|++.... ......+.+|+.++++++||||+++++++.+.. ..
T Consensus 2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (266)
T cd06651 2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL 81 (266)
T ss_pred CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence 4688899999999999999987 568999999986431 233456889999999999999999998764321 00
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+++.......
T Consensus 82 ~l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~ 161 (266)
T cd06651 82 TIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICM 161 (266)
T ss_pred EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCccccccccc
Confidence 39998875432111
Q ss_pred -ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 513 -SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 513 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
........|+..|+|||++.+..++.++|||||||++|||++|+.||..... ....... ..
T Consensus 162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~----~~~~~~~-~~------------- 223 (266)
T cd06651 162 SGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEA----MAAIFKI-AT------------- 223 (266)
T ss_pred cCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccch----HHHHHHH-hc-------------
Confidence 1111234589999999999988899999999999999999999999975321 1111000 00
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..+...+..+.+++ +||..+|++||+|+||
T Consensus 224 -~~~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~ei 258 (266)
T cd06651 224 -QPTNPQLPSHISEHARDFL-GCIFVEARHRPSAEEL 258 (266)
T ss_pred -CCCCCCCchhcCHHHHHHH-HHhcCChhhCcCHHHH
Confidence 0001112223445577787 6888999999999874
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development |
| >cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-23 Score=212.40 Aligned_cols=172 Identities=21% Similarity=0.247 Sum_probs=122.9
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHH-HHhhcccCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIEC-DMMKHIRHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~-~~l~~l~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||.||+|+. .+++.||+|++.... ......+.+|. .+++.++||||+++++++..++..
T Consensus 1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~ 80 (325)
T cd05602 1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING 80 (325)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence 3689999999999987 568899999997532 12223444444 456788999999998876543311
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+|+....... .....+|
T Consensus 81 ~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~--~~~~~~g 158 (325)
T cd05602 81 GELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNG--TTSTFCG 158 (325)
T ss_pred CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCCcccccCCC--CcccccC
Confidence 39999985432221 2244579
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchh
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG 601 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (628)
|+.|||||++.+..++.++||||+||++|||++|++||..... ......... .. ...+.
T Consensus 159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-----~~~~~~i~~------------~~----~~~~~ 217 (325)
T cd05602 159 TPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT-----AEMYDNILN------------KP----LQLKP 217 (325)
T ss_pred CccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCH-----HHHHHHHHh------------CC----cCCCC
Confidence 9999999999999999999999999999999999999965321 111111100 00 11122
Q ss_pred hhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 602 QCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 602 ~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
..+..+.+++.+||+.||++||++.+
T Consensus 218 ~~~~~~~~li~~~l~~~p~~R~~~~~ 243 (325)
T cd05602 218 NITNSARHLLEGLLQKDRTKRLGAKD 243 (325)
T ss_pred CCCHHHHHHHHHHcccCHHHCCCCCC
Confidence 34567899999999999999999864
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt |
| >cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-23 Score=208.69 Aligned_cols=183 Identities=22% Similarity=0.344 Sum_probs=133.8
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.++|+..+.||+|+||.||+|.. .+++.||+|+++.......+.+.+|++++++++||||+++++++..+...
T Consensus 4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 83 (280)
T cd06611 4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEF 83 (280)
T ss_pred hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeec
Confidence 46688889999999999999987 56899999999876666667899999999999999999999976543211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||++....... ....
T Consensus 84 ~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~--~~~~ 161 (280)
T cd06611 84 CDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTL--QKRD 161 (280)
T ss_pred cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCccchhhcccc--cccc
Confidence 3888776543221 1123
Q ss_pred cccccccccCccccc-----cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 518 QTLATIGYMAPEYGR-----EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~-----~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
...||+.|+|||++. +..++.++|||||||++|||++|+.||....... ........
T Consensus 162 ~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~-----~~~~~~~~------------- 223 (280)
T cd06611 162 TFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMR-----VLLKILKS------------- 223 (280)
T ss_pred eeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHH-----HHHHHhcC-------------
Confidence 456999999999875 3457889999999999999999999997532211 11110000
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+..++.++.+++.+||+.||++||++.+|
T Consensus 224 ~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i 259 (280)
T cd06611 224 EPPTLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAEL 259 (280)
T ss_pred CCCCcCCcccCCHHHHHHHHHHhccChhhCcCHHHH
Confidence 000011122345678999999999999999998764
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti |
| >cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-24 Score=217.03 Aligned_cols=169 Identities=18% Similarity=0.231 Sum_probs=124.3
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---------- 498 (628)
+.||+|+||.||+++. .+|+.||+|+++... ......+.+|+++++.++||||+++++++..++..
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~ 80 (325)
T cd05594 1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG 80 (325)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence 3689999999999986 679999999997532 23345678899999999999999998776543211
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+++....... .....+|
T Consensus 81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~g 158 (325)
T cd05594 81 ELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA--TMKTFCG 158 (325)
T ss_pred cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCc--ccccccC
Confidence 49999875432221 1234579
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchh
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG 601 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (628)
|+.|||||++.+..++.++|||||||++|||+||+.||...... ........ . ....+.
T Consensus 159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~-----~~~~~i~~------------~----~~~~p~ 217 (325)
T cd05594 159 TPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE-----KLFELILM------------E----EIRFPR 217 (325)
T ss_pred CcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCHH-----HHHHHHhc------------C----CCCCCC
Confidence 99999999999999999999999999999999999999653211 11111000 0 011223
Q ss_pred hhHHHHHHHhhcccCCCcccCCC
Q 037488 602 QCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 602 ~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
..+.++.+++.+||+.||++|++
T Consensus 218 ~~~~~~~~li~~~L~~dP~~R~~ 240 (325)
T cd05594 218 TLSPEAKSLLSGLLKKDPKQRLG 240 (325)
T ss_pred CCCHHHHHHHHHHhhcCHHHhCC
Confidence 34567899999999999999973
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien |
| >cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-23 Score=207.02 Aligned_cols=180 Identities=22% Similarity=0.379 Sum_probs=127.5
Q ss_pred CCcccccccCCccEEEEEEec-CCc--EEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCC--------
Q 037488 429 FSENNLIDRGGIGYVYKRRIH-YGM--EVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSND-------- 495 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~~-~~~--~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-------- 495 (628)
|...+.||+|+||.||+|+.. ++. .||+|.++.. .....+.+.+|+++++.++||||++++++|...
T Consensus 1 ~~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 80 (272)
T cd05075 1 LALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPS 80 (272)
T ss_pred CccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCC
Confidence 345678999999999999874 343 6999998653 244467789999999999999999999865311
Q ss_pred -----------Cc---------------c--------------------------------------------ccccccc
Q 037488 496 -----------DF---------------K--------------------------------------------ADFGMAK 505 (628)
Q Consensus 496 -----------~~---------------~--------------------------------------------~DFGla~ 505 (628)
+. . +|||+++
T Consensus 81 ~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~ 160 (272)
T cd05075 81 PVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSK 160 (272)
T ss_pred cEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCCccc
Confidence 00 0 3999998
Q ss_pred cccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCcccee
Q 037488 506 PLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKV 584 (628)
Q Consensus 506 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (628)
...............+++.|+|||+..+..++.++|||||||++|||++ |+.||...... ........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~-----~~~~~~~~------ 229 (272)
T cd05075 161 KIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENS-----EIYDYLRQ------ 229 (272)
T ss_pred ccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHH-----HHHHHHHc------
Confidence 6543321111122346778999999998899999999999999999999 88998653211 11111000
Q ss_pred ecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 585 VDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. ....+..++..+.+++.+||+.||++|||+.||
T Consensus 230 ------~~---~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l 264 (272)
T cd05075 230 ------GN---RLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETL 264 (272)
T ss_pred ------CC---CCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence 00 011122456679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor |
| >cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-23 Score=210.62 Aligned_cols=190 Identities=26% Similarity=0.392 Sum_probs=129.3
Q ss_pred hcCCCcccccccCCccEEEEEEecC---------------CcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceee
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHY---------------GMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKII 489 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~---------------~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~ 489 (628)
.++|...+.||+|+||.||+++... ...||+|.++.. .......|.+|++++++++||||++++
T Consensus 4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~ 83 (295)
T cd05097 4 RQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLL 83 (295)
T ss_pred hHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEE
Confidence 3578888999999999999987531 235899998654 233456789999999999999999998
Q ss_pred eeccCCCcc-----------------------------------------------------------------------
Q 037488 490 SSCSNDDFK----------------------------------------------------------------------- 498 (628)
Q Consensus 490 ~~~~~~~~~----------------------------------------------------------------------- 498 (628)
+++..+...
T Consensus 84 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill~ 163 (295)
T cd05097 84 GVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVG 163 (295)
T ss_pred EEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEEEc
Confidence 875331100
Q ss_pred -------ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh--CCCCCCcccCCCccH
Q 037488 499 -------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT--RKKPTDEIFSGEMTL 569 (628)
Q Consensus 499 -------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt--g~~p~~~~~~~~~~~ 569 (628)
+|||+++...............++..|+|||+..++.++.++|||||||++|||++ |..||....... ..
T Consensus 164 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~-~~ 242 (295)
T cd05097 164 NHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQ-VI 242 (295)
T ss_pred CCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHH-HH
Confidence 38998876533322222233456789999999998899999999999999999998 566776432111 11
Q ss_pred HHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 570 KHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.... ...... .... ....+..++..+.+++.+||+.||++|||+++|
T Consensus 243 ~~~~-~~~~~~-----~~~~------~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i 289 (295)
T cd05097 243 ENTG-EFFRNQ-----GRQI------YLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKI 289 (295)
T ss_pred HHHH-Hhhhhc-----cccc------cCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence 1110 000000 0000 001122345679999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including |
| >cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-23 Score=205.11 Aligned_cols=180 Identities=23% Similarity=0.351 Sum_probs=129.7
Q ss_pred cCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-------- 498 (628)
.+|+..+.||+|+||.||+|...++..+|+|.+..... ....+.+|++++++++||||+++++++...+..
T Consensus 4 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~ 82 (256)
T cd05059 4 SELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAM-SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMA 82 (256)
T ss_pred HHcchhhhhccCCCceEEEeEecCCccEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCC
Confidence 34777889999999999999887777899999864322 234578899999999999999999876543211
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||+++...... .......
T Consensus 83 ~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~-~~~~~~~ 161 (256)
T cd05059 83 NGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQ-YTSSQGT 161 (256)
T ss_pred CCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCcccceeccccc-ccccCCC
Confidence 3888887653221 1111122
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
.++..|+|||++.+..++.++|||||||++|||++ |+.||......+ ........ ....
T Consensus 162 ~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--~~~~~~~~------------------~~~~ 221 (256)
T cd05059 162 KFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSE--VVESVSAG------------------YRLY 221 (256)
T ss_pred CCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHH--HHHHHHcC------------------CcCC
Confidence 35568999999999999999999999999999999 899986532211 11100000 0111
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+..++.++.+++.+||..+|++|||+.|+
T Consensus 222 ~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~ 251 (256)
T cd05059 222 RPKLAPTEVYTIMYSCWHEKPEDRPAFKKL 251 (256)
T ss_pred CCCCCCHHHHHHHHHHhcCChhhCcCHHHH
Confidence 223456779999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows |
| >PHA03211 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-23 Score=218.40 Aligned_cols=130 Identities=18% Similarity=0.221 Sum_probs=103.7
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
...+|...+.||+|+||.||+|+. .+++.||||.... ..+.+|++++++++|||||++++++..+...
T Consensus 167 ~~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e 240 (461)
T PHA03211 167 AGLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY------ASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLP 240 (461)
T ss_pred ccCCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc------cCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEE
Confidence 356799999999999999999987 5688999996432 2356899999999999999999976543211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|+............
T Consensus 241 ~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~ 320 (461)
T PHA03211 241 KYRSDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHY 320 (461)
T ss_pred ccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCceeccccccccccc
Confidence 4999998654332222223
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCC
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTD 560 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~ 560 (628)
..+||+.|||||++.+..++.++|||||||++|||++|..|+.
T Consensus 321 ~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf 363 (461)
T PHA03211 321 GIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLF 363 (461)
T ss_pred ccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcc
Confidence 4579999999999999999999999999999999999887653
|
|
| >cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-23 Score=210.33 Aligned_cols=190 Identities=23% Similarity=0.362 Sum_probs=130.6
Q ss_pred hcCCCcccccccCCccEEEEEEec-----------------CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcce
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH-----------------YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIK 487 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~-----------------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~ 487 (628)
.++|+..+.||+|+||.||+++.. ++..||+|++.... ......+.+|++++++++||||++
T Consensus 4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~ 83 (296)
T cd05095 4 RKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIR 83 (296)
T ss_pred hhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcce
Confidence 356888999999999999997532 24579999987543 334567899999999999999999
Q ss_pred eeeeccCCCcc---------------------------------------------------------------------
Q 037488 488 IISSCSNDDFK--------------------------------------------------------------------- 498 (628)
Q Consensus 488 l~~~~~~~~~~--------------------------------------------------------------------- 498 (628)
+++++..++..
T Consensus 84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nili 163 (296)
T cd05095 84 LLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLV 163 (296)
T ss_pred EEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEEE
Confidence 98875432110
Q ss_pred --------ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh--CCCCCCcccCCCcc
Q 037488 499 --------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT--RKKPTDEIFSGEMT 568 (628)
Q Consensus 499 --------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt--g~~p~~~~~~~~~~ 568 (628)
+|||+++.+.............++..|+|||+..++.++.++|||||||++|||++ |..||.......
T Consensus 164 ~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~-- 241 (296)
T cd05095 164 GKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQ-- 241 (296)
T ss_pred cCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccChHH--
Confidence 38998876533322112223445788999999888899999999999999999998 678886432211
Q ss_pred HHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 569 LKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
........+... . .....+.+..++..+.+++.+||+.||++||++.||
T Consensus 242 ~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i 290 (296)
T cd05095 242 VIENTGEFFRDQ--------G---RQVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQEI 290 (296)
T ss_pred HHHHHHHHHhhc--------c---ccccCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHH
Confidence 111000000000 0 000011223456779999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit |
| >cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=206.46 Aligned_cols=180 Identities=18% Similarity=0.319 Sum_probs=130.1
Q ss_pred cCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-------- 498 (628)
++|...+.||+|+||.||+|+...+..+|||.++.... ....+.+|+.++++++||||++++++|..++..
T Consensus 4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 82 (256)
T cd05113 4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMS 82 (256)
T ss_pred HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcc-cHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCC
Confidence 45777889999999999999887677799999874332 235688999999999999999999987643321
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||.++...... .......
T Consensus 83 ~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~-~~~~~~~ 161 (256)
T cd05113 83 NGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDE-YTSSVGS 161 (256)
T ss_pred CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccceecCCCc-eeecCCC
Confidence 3888887543321 1111223
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
.++..|+|||+..+..++.++|||||||++|||++ |+.||...... ........ .. ...
T Consensus 162 ~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~-----~~~~~~~~------------~~---~~~ 221 (256)
T cd05113 162 KFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNS-----ETVEKVSQ------------GL---RLY 221 (256)
T ss_pred ccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHH-----HHHHHHhc------------CC---CCC
Confidence 46788999999998899999999999999999999 99998643211 11111000 00 001
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+...+..+++++.+||+.||++|||+.+|
T Consensus 222 ~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l 251 (256)
T cd05113 222 RPHLASEKVYAIMYSCWHEKAEERPTFQQL 251 (256)
T ss_pred CCCCCCHHHHHHHHHHcCCCcccCCCHHHH
Confidence 111235668999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds |
| >cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-23 Score=208.30 Aligned_cols=183 Identities=24% Similarity=0.377 Sum_probs=133.2
Q ss_pred hcCCCcccccccCCccEEEEEEec------CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
.++|...+.||+|+||.||+|... .+..||+|.+.... ......+.+|+.+++.++||||+++++++..+...
T Consensus 5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~ 84 (277)
T cd05032 5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPT 84 (277)
T ss_pred hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCc
Confidence 457888899999999999998763 24689999986442 33456788999999999999999999875432100
Q ss_pred ----------------------------------------------------------------------------cccc
Q 037488 499 ----------------------------------------------------------------------------ADFG 502 (628)
Q Consensus 499 ----------------------------------------------------------------------------~DFG 502 (628)
+|||
T Consensus 85 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~kl~dfg 164 (277)
T cd05032 85 LVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFG 164 (277)
T ss_pred EEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCCEEECCcc
Confidence 3899
Q ss_pred ccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCcc
Q 037488 503 MAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISV 581 (628)
Q Consensus 503 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~ 581 (628)
+++...............+|..|+|||++.++.++.++|||||||++||++| |+.||....... ......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~--~~~~~~------- 235 (277)
T cd05032 165 MTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEE--VLKFVI------- 235 (277)
T ss_pred cchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHHH--HHHHHh-------
Confidence 8886544332222234467889999999988889999999999999999998 999986532211 111110
Q ss_pred ceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 582 MKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+ ......+..++.++.+++.+||+.+|++|||+.|+
T Consensus 236 ----~-------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l 271 (277)
T cd05032 236 ----D-------GGHLDLPENCPDKLLELMRMCWQYNPKMRPTFLEI 271 (277)
T ss_pred ----c-------CCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 0 00112233456779999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological |
| >PTZ00284 protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-23 Score=221.90 Aligned_cols=134 Identities=23% Similarity=0.198 Sum_probs=99.6
Q ss_pred HHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCC------CcceeeeeccCC
Q 037488 423 FQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHR------NLIKIISSCSND 495 (628)
Q Consensus 423 ~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~------niv~l~~~~~~~ 495 (628)
...+++|...+.||+|+||.||+|.. .+++.||||+++... ...+.+..|+++++.++|. +++++++++..+
T Consensus 125 ~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~ 203 (467)
T PTZ00284 125 DVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNE 203 (467)
T ss_pred ccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcC
Confidence 34568899999999999999999987 568899999996432 2233456677777776554 577777765432
Q ss_pred Cc------------------------------------------------------------------------------
Q 037488 496 DF------------------------------------------------------------------------------ 497 (628)
Q Consensus 496 ~~------------------------------------------------------------------------------ 497 (628)
..
T Consensus 204 ~~~~~iv~~~~g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~ 283 (467)
T PTZ00284 204 TGHMCIVMPKYGPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPD 283 (467)
T ss_pred CceEEEEEeccCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCcccccccccccCCC
Confidence 10
Q ss_pred -----cccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcc
Q 037488 498 -----KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEI 562 (628)
Q Consensus 498 -----~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~ 562 (628)
.+|||.+.... ......+||++|||||++.+..|+.++|||||||++|||++|++||+..
T Consensus 284 ~~~vkl~DfG~~~~~~-----~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~ 348 (467)
T PTZ00284 284 PCRVRICDLGGCCDER-----HSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTH 348 (467)
T ss_pred CceEEECCCCccccCc-----cccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 02455443211 1123457999999999999999999999999999999999999999753
|
|
| >cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-23 Score=212.80 Aligned_cols=171 Identities=22% Similarity=0.274 Sum_probs=122.9
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHH-HhhcccCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECD-MMKHIRHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||.||+|+. .+|+.||+|++.... ......+.+|.. +++.++||||+++++++..++..
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~ 80 (325)
T cd05604 1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG 80 (325)
T ss_pred CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence 4689999999999986 679999999997532 223345556654 56789999999998876543211
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+++...... ......+|
T Consensus 81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~--~~~~~~~g 158 (325)
T cd05604 81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQS--DTTTTFCG 158 (325)
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCC--CCcccccC
Confidence 3999987532221 11234579
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchh
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG 601 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (628)
|+.|||||++.+..++.++||||+||++|||++|+.||..... ......... .. ...+.
T Consensus 159 t~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~-----~~~~~~~~~------------~~----~~~~~ 217 (325)
T cd05604 159 TPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDV-----AEMYDNILH------------KP----LVLRP 217 (325)
T ss_pred ChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCH-----HHHHHHHHc------------CC----ccCCC
Confidence 9999999999999999999999999999999999999965321 111111110 00 01112
Q ss_pred hhHHHHHHHhhcccCCCcccCCCCC
Q 037488 602 QCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 602 ~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
..+.++.+++.+|++.||.+||+++
T Consensus 218 ~~~~~~~~ll~~ll~~~p~~R~~~~ 242 (325)
T cd05604 218 GASLTAWSILEELLEKDRQRRLGAK 242 (325)
T ss_pred CCCHHHHHHHHHHhccCHHhcCCCC
Confidence 3456688999999999999999986
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, |
| >cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-23 Score=209.00 Aligned_cols=183 Identities=20% Similarity=0.265 Sum_probs=132.8
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
++|+..+.||+|+||.||++.. .+|+.||+|++.... ....+.+.+|+++++.++||||+++++++......
T Consensus 5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 84 (284)
T cd06620 5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEF 84 (284)
T ss_pred HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEec
Confidence 4677889999999999999987 568999999986543 34457789999999999999999999887543211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++...... ..
T Consensus 85 ~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~----~~ 160 (284)
T cd06620 85 MDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSI----AD 160 (284)
T ss_pred CCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCcccchhhhc----cC
Confidence 3787776432211 12
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCc------cHHHHHHhhcCCccceeecccccC
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEM------TLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
..+||..|+|||++.++.++.++|||||||++|||+||+.||......+. ....+...... .
T Consensus 161 ~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 228 (284)
T cd06620 161 TFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQ------------E 228 (284)
T ss_pred ccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhh------------c
Confidence 35799999999999888999999999999999999999999975432110 01111111110 0
Q ss_pred Ccccchhc-hhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVI-KGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~-~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .... ...++.++.+++.+||+.||++|||+.||
T Consensus 229 ~---~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~ 263 (284)
T cd06620 229 P---PPRLPSSDFPEDLRDFVDACLLKDPTERPTPQQL 263 (284)
T ss_pred c---CCCCCchhcCHHHHHHHHHHhcCCcccCcCHHHH
Confidence 0 0001 11245679999999999999999998764
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=216.19 Aligned_cols=263 Identities=25% Similarity=0.328 Sum_probs=209.8
Q ss_pred CCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccc
Q 037488 57 SKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQS 136 (628)
Q Consensus 57 ~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~ 136 (628)
.+-..|+|++|.++.+ |..+. ++|+.|++++|+++.++. ..++|++|++++|+|+.+ |. ++..
T Consensus 201 ~~~~~LdLs~~~LtsL-P~~l~--~~L~~L~L~~N~Lt~LP~---------lp~~Lk~LdLs~N~LtsL-P~----lp~s 263 (788)
T PRK15387 201 NGNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLTSL-PV----LPPG 263 (788)
T ss_pred CCCcEEEcCCCCCCcC-Ccchh--cCCCEEEccCCcCCCCCC---------CCCCCcEEEecCCccCcc-cC----cccc
Confidence 4577899999999975 55665 489999999999998753 247899999999999965 43 3457
Q ss_pred cceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccC
Q 037488 137 MEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGS 216 (628)
Q Consensus 137 l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 216 (628)
|+.|++++|.+.. +|.. ..+|+.|++++|+++. +|. .+++|+.|+|++|++.+ +|.. ..+|+.|++++
T Consensus 264 L~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~ 331 (788)
T PRK15387 264 LLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYN 331 (788)
T ss_pred cceeeccCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---ccccccccccc
Confidence 8999999999874 4443 3578899999999984 554 34789999999999985 4543 24688899999
Q ss_pred CcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCcc
Q 037488 217 NKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPI 296 (628)
Q Consensus 217 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 296 (628)
|++++ +|.. ..+|+.|+|++|+|+.+|.. ..+|..|++++|.++. +|.. ..+|+.|++++|++++ +|.
T Consensus 332 N~L~~-LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~ 399 (788)
T PRK15387 332 NQLTS-LPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPV 399 (788)
T ss_pred Ccccc-cccc---ccccceEecCCCccCCCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCC
Confidence 99986 4432 25899999999999999864 3578899999999985 4543 3578999999999985 454
Q ss_pred ccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCC
Q 037488 297 TIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPR 368 (628)
Q Consensus 297 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~ 368 (628)
. .++|+.|++++|++++ +|..+ .+|+.|++++|+|+ .+|..+..+++|+.|++++|++++.++.
T Consensus 400 l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 400 L---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred c---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 3 3689999999999984 66543 46889999999998 5688899999999999999999987654
|
|
| >cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-23 Score=209.03 Aligned_cols=178 Identities=24% Similarity=0.310 Sum_probs=129.7
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
...|...+.||+|+||.||+|+. .+|+.||+|++... ..+..+.+.+|+++++.++||||++++++|.+++..
T Consensus 14 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv 93 (307)
T cd06607 14 EKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLV 93 (307)
T ss_pred chhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEE
Confidence 45688889999999999999987 56899999998643 233456788999999999999999999987653211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++.....
T Consensus 94 ~e~~~g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~----- 168 (307)
T cd06607 94 MEYCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPA----- 168 (307)
T ss_pred HHhhCCCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCcceecCCC-----
Confidence 388877643221
Q ss_pred cccccccccccCccccc---cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 516 QTQTLATIGYMAPEYGR---EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~---~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
....|+..|+|||++. .+.++.++|||||||++|||+||++||....... ...... .. .
T Consensus 169 -~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~----~~~~~~-~~------------~ 230 (307)
T cd06607 169 -NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS----ALYHIA-QN------------D 230 (307)
T ss_pred -CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHHH----HHHHHh-cC------------C
Confidence 2346889999999874 3568999999999999999999999986432110 000000 00 0
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++||++.+|
T Consensus 231 --~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i 264 (307)
T cd06607 231 --SPTLSSNDWSDYFRNFVDSCLQKIPQDRPSSEEL 264 (307)
T ss_pred --CCCCCchhhCHHHHHHHHHHhcCChhhCcCHHHH
Confidence 0000112346679999999999999999998764
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily |
| >cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-23 Score=208.50 Aligned_cols=199 Identities=21% Similarity=0.197 Sum_probs=130.5
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
+|+..+.||+|+||.||+|+. .+|+.||+|+++... ......+.+|++++++++||||+++++++.+....
T Consensus 1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 80 (284)
T cd07839 1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEY 80 (284)
T ss_pred CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEec
Confidence 477888999999999999987 579999999986532 22235577899999999999999988776443211
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+++....... ....
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~ 158 (284)
T cd07839 81 CDQDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVR--CYSA 158 (284)
T ss_pred CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhccCCCCC--CcCC
Confidence 39999886432211 1234
Q ss_pred ccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc------cceeecccccC
Q 037488 519 TLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS------VMKVVDAHLLS 591 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 591 (628)
..++..|+|||++.+.. ++.++||||+||++|||+||+.|+.........+........... .....+.....
T Consensus 159 ~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (284)
T cd07839 159 EVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYP 238 (284)
T ss_pred CccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccccccC
Confidence 56899999999987654 799999999999999999999886432221111111111100000 00000000000
Q ss_pred Ccccc---hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKH---FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~---~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..... .......+.++.+++.+||+.||++|||+.|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~i 278 (284)
T cd07839 239 MYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEA 278 (284)
T ss_pred CCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHH
Confidence 00000 01112356788999999999999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also |
| >cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-23 Score=216.00 Aligned_cols=187 Identities=20% Similarity=0.200 Sum_probs=131.1
Q ss_pred HHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc
Q 037488 422 LFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF 497 (628)
Q Consensus 422 l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 497 (628)
.....++|...+.||+|+||.||+|+. .+++.||+|++.... ....+.+.+|+.+++.++||||+++++++.++..
T Consensus 38 ~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~ 117 (371)
T cd05622 38 LRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRY 117 (371)
T ss_pred cCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCE
Confidence 344568999999999999999999987 578999999986422 2334567889999999999999999987654332
Q ss_pred c-----------------------------------------------------------------ccccccccccccCc
Q 037488 498 K-----------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 498 ~-----------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
. +|||+|+......
T Consensus 118 ~~lv~Ey~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~- 196 (371)
T cd05622 118 LYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEG- 196 (371)
T ss_pred EEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCC-
Confidence 1 4999998654322
Q ss_pred ccccccccccccccCccccccC----ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccc
Q 037488 513 SLIQTQTLATIGYMAPEYGREG----RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~----~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (628)
.......+||+.|||||++.+. .++.++||||+||++|||++|+.||..... .........
T Consensus 197 ~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~-----~~~~~~i~~---------- 261 (371)
T cd05622 197 MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL-----VGTYSKIMN---------- 261 (371)
T ss_pred cccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCH-----HHHHHHHHc----------
Confidence 1122356799999999998753 388999999999999999999999965211 111111100
Q ss_pred ccCCcccchhchhhhHHHHHHHhhcccCCCccc---CCCCCC
Q 037488 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEE---RVNAKE 627 (628)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~---Rpt~~e 627 (628)
.......+.+...+.++++++.+|+. +|.+ ||++.|
T Consensus 262 --~~~~~~~~~~~~~s~~~~~li~~~L~-~~~~r~~r~~~~e 300 (371)
T cd05622 262 --HKNSLTFPDDNDISKEAKNLICAFLT-DREVRLGRNGVEE 300 (371)
T ss_pred --CCCcccCCCcCCCCHHHHHHHHHHcC-ChhhhcCCCCHHH
Confidence 00000111222456679999999998 5555 555544
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an |
| >cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-23 Score=210.45 Aligned_cols=171 Identities=20% Similarity=0.272 Sum_probs=122.8
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHH-HhhcccCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECD-MMKHIRHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||.||+|+. .+|+.||+|++.... ......+.+|.. +++.++|||||++++++.+.+..
T Consensus 1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~ 80 (321)
T cd05603 1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG 80 (321)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence 3689999999999987 568999999997532 222344555554 67889999999998876543211
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+++...... ......+|
T Consensus 81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~g 158 (321)
T cd05603 81 GELFFHLQRERCFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPE--ETTSTFCG 158 (321)
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCC--CccccccC
Confidence 4999987532221 12234579
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchh
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG 601 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (628)
|+.|+|||++.+..++.++||||+||++|||++|+.||.... .......... . ....+.
T Consensus 159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~-----~~~~~~~i~~------------~----~~~~~~ 217 (321)
T cd05603 159 TPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRD-----VSQMYDNILH------------K----PLQLPG 217 (321)
T ss_pred CcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCC-----HHHHHHHHhc------------C----CCCCCC
Confidence 999999999999899999999999999999999999996521 1111111110 0 011222
Q ss_pred hhHHHHHHHhhcccCCCcccCCCCC
Q 037488 602 QCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 602 ~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
..+.++.+++.+||+.||++||++.
T Consensus 218 ~~~~~~~~li~~~l~~~p~~R~~~~ 242 (321)
T cd05603 218 GKTVAACDLLVGLLHKDQRRRLGAK 242 (321)
T ss_pred CCCHHHHHHHHHHccCCHhhcCCCC
Confidence 3456689999999999999999864
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. |
| >cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-23 Score=207.53 Aligned_cols=194 Identities=19% Similarity=0.279 Sum_probs=131.2
Q ss_pred CCcccccccCCccEEEEEEe-----cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc--c--
Q 037488 429 FSENNLIDRGGIGYVYKRRI-----HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--K-- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--~-- 498 (628)
|...+.||+|+||+||++.. .+++.||+|.++... ......+.+|++++++++||||++++++|...+. .
T Consensus 6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 85 (283)
T cd05080 6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL 85 (283)
T ss_pred ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence 37788999999999987642 357889999987543 2345678899999999999999999997653210 0
Q ss_pred ---------------------------------------------------------------ccccccccccccCcc-c
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQS-L 514 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~-~ 514 (628)
+|||+++........ .
T Consensus 86 v~e~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~ 165 (283)
T cd05080 86 IMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYR 165 (283)
T ss_pred EecCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeecccccccCCcchhhc
Confidence 399998865432211 1
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcC-CccceeecccccCCc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLP-ISVMKVVDAHLLSQE 593 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 593 (628)
......++..|+|||+..+..++.++|||||||++|||+||+.|+................... ....+..+..
T Consensus 166 ~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 240 (283)
T cd05080 166 VREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERG----- 240 (283)
T ss_pred cCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcC-----
Confidence 1122346778999999998899999999999999999999999986532211111000000000 0000000100
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+++|
T Consensus 241 -~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i 274 (283)
T cd05080 241 -MRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSL 274 (283)
T ss_pred -CCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHH
Confidence 1112234567789999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign |
| >cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-23 Score=204.30 Aligned_cols=181 Identities=24% Similarity=0.371 Sum_probs=130.7
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
.++|...+.||+|+||.||+|+..+...||+|+++.... ..+.+.+|++++++++||||+++++++.+....
T Consensus 5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~ 83 (262)
T cd05071 5 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMS 83 (262)
T ss_pred hHHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc-CHHHHHHHHHHHHhCCCCCcceEEEEECCCCcEEEEEcCC
Confidence 456888999999999999999886666799999875332 235688999999999999999998865332110
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||.++........ ....
T Consensus 84 ~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~-~~~~ 162 (262)
T cd05071 84 KGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQG 162 (262)
T ss_pred CCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCceeeccccccc-cccC
Confidence 389988765332211 1123
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccch
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHF 597 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (628)
..++..|+|||+..++.++.++|||||||++|||+| |+.||....... ...... .. ...
T Consensus 163 ~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~-----~~~~~~------------~~---~~~ 222 (262)
T cd05071 163 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE-----VLDQVE------------RG---YRM 222 (262)
T ss_pred CcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHH-----HHHHHh------------cC---CCC
Confidence 457788999999988899999999999999999999 888986532211 000000 00 001
Q ss_pred hchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 598 VIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 598 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+..++.++.+++.+||+.||++||++.++
T Consensus 223 ~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~ 253 (262)
T cd05071 223 PCPPECPESLHDLMCQCWRKEPEERPTFEYL 253 (262)
T ss_pred CCccccCHHHHHHHHHHccCCcccCCCHHHH
Confidence 1122456678999999999999999998763
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo |
| >cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-23 Score=204.49 Aligned_cols=181 Identities=23% Similarity=0.339 Sum_probs=130.8
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---------hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---------REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF 497 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 497 (628)
+|.....||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+.++++++||||+++++++.+++.
T Consensus 1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~ 80 (267)
T cd06628 1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADH 80 (267)
T ss_pred CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCc
Confidence 366678999999999999986 568899999886422 1223568899999999999999999988654322
Q ss_pred c------------------------------------------------------------------ccccccccccccC
Q 037488 498 K------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 498 ~------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
. +|||+++......
T Consensus 81 ~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~ 160 (267)
T cd06628 81 LNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANS 160 (267)
T ss_pred cEEEEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCccccccc
Confidence 1 3999888664221
Q ss_pred ccc----ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecc
Q 037488 512 QSL----IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587 (628)
Q Consensus 512 ~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (628)
... ......|+..|+|||++.+..++.++||||+||++|||++|+.||..... ........ .
T Consensus 161 ~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~----~~~~~~~~---------~- 226 (267)
T cd06628 161 LSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQ----LQAIFKIG---------E- 226 (267)
T ss_pred ccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccH----HHHHHHHh---------c-
Confidence 110 11234589999999999988899999999999999999999999975321 11110000 0
Q ss_pred cccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+...+.++.+++.+||+.||++||++.||
T Consensus 227 ------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i 261 (267)
T cd06628 227 ------NASPEIPSNISSEAIDFLEKTFEIDHNKRPTAAEL 261 (267)
T ss_pred ------cCCCcCCcccCHHHHHHHHHHccCCchhCcCHHHH
Confidence 00111223346678999999999999999998764
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate |
| >cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-23 Score=208.34 Aligned_cols=183 Identities=21% Similarity=0.235 Sum_probs=129.2
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhccc-CCCcceeeeeccCCCcc------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIR-HRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~------ 498 (628)
+|...+.||+|+||.||++.. .+|+.||+|++.... ......+.+|+.++.++. ||||+++++++..+...
T Consensus 5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~ 84 (288)
T cd06616 5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMEL 84 (288)
T ss_pred HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEec
Confidence 455667899999999999987 568999999986532 234567889999999996 99999999865432100
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+......
T Consensus 85 ~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~-- 162 (288)
T cd06616 85 MDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSI-- 162 (288)
T ss_pred ccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEeecchhHHhccCC--
Confidence 3888887543221
Q ss_pred cccccccccccccCccccccC---ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 514 LIQTQTLATIGYMAPEYGREG---RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~---~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
......||..|+|||++.+. .++.++||||+||++|||++|+.||.... ............. .+.+.
T Consensus 163 -~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~----~~~~~~~~~~~~~-----~~~~~ 232 (288)
T cd06616 163 -AKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWN----SVFDQLTQVVKGD-----PPILS 232 (288)
T ss_pred -ccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcc----hHHHHHhhhcCCC-----CCcCC
Confidence 11334689999999998876 68999999999999999999999996532 1111111100000 00000
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..++.++.+++.+||+.||++|||+.||
T Consensus 233 ------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i 264 (288)
T cd06616 233 ------NSEEREFSPSFVNFINLCLIKDESKRPKYKEL 264 (288)
T ss_pred ------CcCCCccCHHHHHHHHHHccCChhhCcCHHHH
Confidence 01112356679999999999999999998764
|
Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates |
| >cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-23 Score=209.71 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=127.0
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhccc-CCCcceeeeeccCCCcc----
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIR-HRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~---- 498 (628)
+|+..+.||+|+||.||+|+. .+|+.||+|++.... ....+.+..|.++++.+. |++|+++++++..++..
T Consensus 1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~ 80 (323)
T cd05615 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM 80 (323)
T ss_pred CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence 367778999999999999986 579999999997532 233456788999998885 56777787765432211
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++....... ..
T Consensus 81 Ey~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~--~~ 158 (323)
T cd05615 81 EYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGV--TT 158 (323)
T ss_pred cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeccccccccCCCCc--cc
Confidence 49999985432221 12
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
....||+.|||||++.+..++.++||||+||++|||++|+.||...... ........ ..
T Consensus 159 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~-----~~~~~i~~------------~~---- 217 (323)
T cd05615 159 RTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDED-----ELFQSIME------------HN---- 217 (323)
T ss_pred cCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHH-----HHHHHHHh------------CC----
Confidence 3456999999999999999999999999999999999999999753211 11111100 00
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
...+...+.++.+++.+||+.||++|++..
T Consensus 218 ~~~p~~~~~~~~~li~~~l~~~p~~R~~~~ 247 (323)
T cd05615 218 VSYPKSLSKEAVSICKGLMTKHPSKRLGCG 247 (323)
T ss_pred CCCCccCCHHHHHHHHHHcccCHhhCCCCC
Confidence 112223456789999999999999999864
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a |
| >cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-23 Score=215.84 Aligned_cols=187 Identities=18% Similarity=0.205 Sum_probs=131.0
Q ss_pred HHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 423 FQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 423 ~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
....++|...+.||+|+||.||+|+. .+++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+++..
T Consensus 39 ~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~ 118 (370)
T cd05621 39 QMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYL 118 (370)
T ss_pred CCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEE
Confidence 34467899999999999999999987 568999999996422 22345678999999999999999999876554321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+.......
T Consensus 119 ~lv~Ey~~gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~- 197 (370)
T cd05621 119 YMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGM- 197 (370)
T ss_pred EEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEecccceecccCCc-
Confidence 49999986543221
Q ss_pred cccccccccccccCccccccC----ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccc
Q 037488 514 LIQTQTLATIGYMAPEYGREG----RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~----~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (628)
....+.+||++|||||++.+. .++.++||||+||++|||++|+.||..... ........ +.
T Consensus 198 ~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~-----~~~~~~i~--------~~-- 262 (370)
T cd05621 198 VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSL-----VGTYSKIM--------DH-- 262 (370)
T ss_pred eecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCH-----HHHHHHHH--------hC--
Confidence 122356799999999998754 378999999999999999999999965321 11111110 00
Q ss_pred cCCcccchhchhhhHHHHHHHhhcccCCCccc--CCCCCC
Q 037488 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEE--RVNAKE 627 (628)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~--Rpt~~e 627 (628)
......+.....+..+++++.+|++.++.+ |||+.|
T Consensus 263 --~~~~~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e 300 (370)
T cd05621 263 --KNSLNFPEDVEISKHAKNLICAFLTDREVRLGRNGVEE 300 (370)
T ss_pred --CcccCCCCcccCCHHHHHHHHHHccCchhccCCCCHHH
Confidence 000001111134566889999999865543 777765
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found |
| >cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-23 Score=206.33 Aligned_cols=183 Identities=22% Similarity=0.256 Sum_probs=134.2
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.++|...+.||+|+||.||+|.. .+++.||+|.+........+.+.+|+.++++++||||++++++|..++..
T Consensus 18 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~ 97 (293)
T cd06647 18 KKKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEY 97 (293)
T ss_pred hhhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEec
Confidence 36788889999999999999986 56889999998765544556788999999999999999999876543211
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||++........ .....
T Consensus 98 ~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~--~~~~~ 175 (293)
T cd06647 98 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTM 175 (293)
T ss_pred CCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcceeccccccc--ccccc
Confidence 38888765433221 12334
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhc
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVI 599 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (628)
.|++.|+|||+..+..++.++|||||||++||+++|+.||.......... .+. ... ......
T Consensus 176 ~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~~~-~~~---------------~~~--~~~~~~ 237 (293)
T cd06647 176 VGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALY-LIA---------------TNG--TPELQN 237 (293)
T ss_pred cCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhhee-ehh---------------cCC--CCCCCC
Confidence 68999999999988889999999999999999999999996532211000 000 000 000111
Q ss_pred hhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 600 KGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 600 ~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+...+.++.+++.+||+.+|++||+++++
T Consensus 238 ~~~~~~~l~~li~~~l~~~p~~Rp~~~~i 266 (293)
T cd06647 238 PEKLSAIFRDFLNRCLEMDVEKRGSAKEL 266 (293)
T ss_pred ccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence 22345668999999999999999998764
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi |
| >cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-23 Score=201.58 Aligned_cols=175 Identities=26% Similarity=0.386 Sum_probs=126.1
Q ss_pred cccccCCccEEEEEEecCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------------
Q 037488 433 NLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------------- 498 (628)
+.||+|+||.||+|...+++.+|+|.++... ......+.+|++++++++||||++++++|......
T Consensus 1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~ 80 (250)
T cd05085 1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFL 80 (250)
T ss_pred CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHH
Confidence 3689999999999998778999999986543 23345688999999999999999999887543211
Q ss_pred ------------------------------------------------------ccccccccccccCccccccccccccc
Q 037488 499 ------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLATIG 524 (628)
Q Consensus 499 ------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt~~ 524 (628)
+|||+++...... ........++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~-~~~~~~~~~~~~ 159 (250)
T cd05085 81 SFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGI-YSSSGLKQIPIK 159 (250)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCccceeccccc-cccCCCCCCccc
Confidence 3888887532221 111122245678
Q ss_pred ccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhh
Q 037488 525 YMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQC 603 (628)
Q Consensus 525 y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (628)
|+|||+..++.++.++|||||||++||+++ |..||...... ........ . .....+..+
T Consensus 160 y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~-----~~~~~~~~-~--------------~~~~~~~~~ 219 (250)
T cd05085 160 WTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQ-----QAREQVEK-G--------------YRMSCPQKC 219 (250)
T ss_pred ccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHH-----HHHHHHHc-C--------------CCCCCCCCC
Confidence 999999998899999999999999999999 99998653211 11111000 0 001112235
Q ss_pred HHHHHHHhhcccCCCcccCCCCCCC
Q 037488 604 VSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 604 ~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.++.+++.+||+.+|++||++.|+
T Consensus 220 ~~~~~~li~~~l~~~p~~Rp~~~~l 244 (250)
T cd05085 220 PDDVYKVMQRCWDYKPENRPKFSEL 244 (250)
T ss_pred CHHHHHHHHHHcccCcccCCCHHHH
Confidence 6679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c |
| >cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-23 Score=206.64 Aligned_cols=183 Identities=23% Similarity=0.371 Sum_probs=131.5
Q ss_pred hcCCCcccccccCCccEEEEEEec------CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
.++|+..+.||+|+||.||+|... ++..||+|++.... ....+.+.+|+.++++++||||++++++|..++..
T Consensus 4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~ 83 (288)
T cd05050 4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPM 83 (288)
T ss_pred hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCcc
Confidence 467888999999999999999753 46789999987543 33456788999999999999999999876542100
Q ss_pred --------------------------------------------------------------------------------
Q 037488 499 -------------------------------------------------------------------------------- 498 (628)
Q Consensus 499 -------------------------------------------------------------------------------- 498 (628)
T Consensus 84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~nil~ 163 (288)
T cd05050 84 CLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLV 163 (288)
T ss_pred EEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhheEe
Confidence
Q ss_pred --------ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccH
Q 037488 499 --------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTL 569 (628)
Q Consensus 499 --------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~ 569 (628)
+|||+++...............++..|+|||++.+..++.++|||||||++|||++ |..||.+...
T Consensus 164 ~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~----- 238 (288)
T cd05050 164 GENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAH----- 238 (288)
T ss_pred cCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH-----
Confidence 38888875433221111223346778999999998899999999999999999998 8888854322
Q ss_pred HHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 570 KHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+...... ... ...+..++.++.+++.+||+.||++|||+.|+
T Consensus 239 ~~~~~~~~~--------~~~-------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el 282 (288)
T cd05050 239 EEVIYYVRD--------GNV-------LSCPDNCPLELYNLMRLCWSKLPSDRPSFASI 282 (288)
T ss_pred HHHHHHHhc--------CCC-------CCCCCCCCHHHHHHHHHHcccCcccCCCHHHH
Confidence 111111100 000 11122346679999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M |
| >cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-23 Score=208.85 Aligned_cols=183 Identities=23% Similarity=0.368 Sum_probs=130.8
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCc----EEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGM----EVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
.++|...+.||+|+||.||+|.. .+|. .||+|.+.... ......+.+|+.++++++||||++++++|......
T Consensus 6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~ 85 (303)
T cd05110 6 ETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQL 85 (303)
T ss_pred hhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCCCcee
Confidence 45678889999999999999986 4454 57888886543 23344688999999999999999999987542110
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+++........
T Consensus 86 v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~ 165 (303)
T cd05110 86 VTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKE 165 (303)
T ss_pred eehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhcCeeccccccceeeecCCCceEEccccccccccCcccc
Confidence 399999865433221
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.......++..|+|||++.+..++.++|||||||++|||++ |+.||.+... .....+....
T Consensus 166 ~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~--~~~~~~~~~~---------------- 227 (303)
T cd05110 166 YNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPT--REIPDLLEKG---------------- 227 (303)
T ss_pred cccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHCC----------------
Confidence 12223456789999999998999999999999999999998 8999865321 1111111100
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++..+.+++.+||..+|++||++.++
T Consensus 228 --~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l 261 (303)
T cd05110 228 --ERLPQPPICTIDVYMVMVKCWMIDADSRPKFKEL 261 (303)
T ss_pred --CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 0011122345668999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin |
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-23 Score=228.17 Aligned_cols=182 Identities=18% Similarity=0.228 Sum_probs=129.5
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc---
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--- 497 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--- 497 (628)
...++|.+.+.||+|+||.||+|.. .+++.||+|++... .......|.+|+.++++++|||||++++++.+...
T Consensus 10 ~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~l 89 (1021)
T PTZ00266 10 SRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKL 89 (1021)
T ss_pred cccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEE
Confidence 3456899999999999999999987 56889999998753 23345678999999999999999999886532110
Q ss_pred --------------------------------------------------------------------------------
Q 037488 498 -------------------------------------------------------------------------------- 497 (628)
Q Consensus 498 -------------------------------------------------------------------------------- 497 (628)
T Consensus 90 yIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~ 169 (1021)
T PTZ00266 90 YILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKIT 169 (1021)
T ss_pred EEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcccccccc
Confidence
Q ss_pred -------------cccccccccccccCcccccccccccccccCcccccc--CccCcccchhhHhHHHHHHhhCCCCCCcc
Q 037488 498 -------------KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGRE--GRVSTNGDVYSFGIMLIETFTRKKPTDEI 562 (628)
Q Consensus 498 -------------~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~ 562 (628)
.+|||+++...... .....+||+.|+|||++.+ ..++.++|||||||++|||+||+.||...
T Consensus 170 ~~~~n~ng~~iVKLsDFGlAr~l~~~s---~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~ 246 (1021)
T PTZ00266 170 AQANNLNGRPIAKIGDFGLSKNIGIES---MAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKA 246 (1021)
T ss_pred ccccccCCCCceEEccCCccccccccc---cccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcC
Confidence 02566665432211 1234579999999999864 45899999999999999999999999642
Q ss_pred cCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 563 FSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ....++...... +. ......+.++.+||.+||+.+|++||++.|+
T Consensus 247 ~----~~~qli~~lk~~-------p~---------lpi~~~S~eL~dLI~~~L~~dPeeRPSa~Ql 292 (1021)
T PTZ00266 247 N----NFSQLISELKRG-------PD---------LPIKGKSKELNILIKNLLNLSAKERPSALQC 292 (1021)
T ss_pred C----cHHHHHHHHhcC-------CC---------CCcCCCCHHHHHHHHHHhcCChhHCcCHHHH
Confidence 1 121221111000 00 0011235668999999999999999998763
|
|
| >cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-23 Score=206.44 Aligned_cols=198 Identities=23% Similarity=0.213 Sum_probs=131.3
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
+|...+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|+.+++.++||||+++++++..+...
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~ 80 (285)
T cd07861 1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF 80 (285)
T ss_pred CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence 477888999999999999987 579999999986532 22345678899999999999999999987543211
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++...... ...
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~--~~~ 158 (285)
T cd07861 81 LSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPV--RVY 158 (285)
T ss_pred CCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccceeecCCCc--ccc
Confidence 3899887543221 112
Q ss_pred ccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcC---Cccce---eec--c
Q 037488 517 TQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLP---ISVMK---VVD--A 587 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~--~ 587 (628)
....|++.|+|||++.+. .++.++|||||||++|||+||++||.+..... ........... ..+.. ..+ .
T Consensus 159 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (285)
T cd07861 159 THEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEID-QLFRIFRILGTPTEDVWPGVTSLPDYKN 237 (285)
T ss_pred cCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHhCCCChhhhhcchhhHHHHh
Confidence 344689999999988764 47899999999999999999999997532111 01111000000 00000 000 0
Q ss_pred cccC-CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLS-QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~-~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.... ............+.++.+++.+||+.||++|||+.+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~l 279 (285)
T cd07861 238 TFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKA 279 (285)
T ss_pred hccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHH
Confidence 0000 0000001122356778999999999999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 |
| >cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-23 Score=202.72 Aligned_cols=187 Identities=22% Similarity=0.274 Sum_probs=133.8
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
++|+..+.||.|+||.||+|.. .++..+|+|++.... ....+.+.+|+++++.++||||+++++.+..++..
T Consensus 1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~ 80 (267)
T cd06610 1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPY 80 (267)
T ss_pred CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEec
Confidence 4688899999999999999986 568899999986532 33567789999999999999999998865432210
Q ss_pred ---------------------------------------------------------------ccccccccccccCccc-
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSL- 514 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~- 514 (628)
+|||++..+.......
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~ 160 (267)
T cd06610 81 LSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTR 160 (267)
T ss_pred cCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccc
Confidence 3888887654432221
Q ss_pred -ccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 515 -IQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 515 -~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.....+|+..|+|||++... .++.++|||||||++|||++|+.||....+.. ........ . .+...
T Consensus 161 ~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~-~~~~~~~~---~------~~~~~-- 228 (267)
T cd06610 161 KVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMK-VLMLTLQN---D------PPSLE-- 228 (267)
T ss_pred cccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhh-hHHHHhcC---C------CCCcC--
Confidence 22334699999999998877 78999999999999999999999997542211 11111110 0 00000
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .......+.++.+++.+||+.||++|||+.|+
T Consensus 229 --~-~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l 261 (267)
T cd06610 229 --T-GADYKKYSKSFRKMISLCLQKDPSKRPTAEEL 261 (267)
T ss_pred --C-ccccccccHHHHHHHHHHcCCChhhCcCHHHH
Confidence 0 00112346778999999999999999998764
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 |
| >cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3 | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-23 Score=206.21 Aligned_cols=198 Identities=24% Similarity=0.238 Sum_probs=130.1
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
+|+..+.||+|+||.||+|+. .+|+.||||+++... ......+.+|++++++++||||+++++++.+++..
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~ 80 (284)
T cd07860 1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF 80 (284)
T ss_pred CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence 478889999999999999987 578999999986432 22345688999999999999999999876543211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++....... ...
T Consensus 81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~--~~~ 158 (284)
T cd07860 81 LHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR--TYT 158 (284)
T ss_pred cccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchhhcccCcc--ccc
Confidence 38888875432211 123
Q ss_pred cccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhc-CC-ccc----eeecc--c
Q 037488 518 QTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL-PI-SVM----KVVDA--H 588 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~-~~-~~~----~~~~~--~ 588 (628)
...++.+|+|||++.+.. ++.++|||||||++|||+||+.||...... ........... +. ... ...+. .
T Consensus 159 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (284)
T cd07860 159 HEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI-DQLFRIFRTLGTPDEVVWPGVTSLPDYKPS 237 (284)
T ss_pred cccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHhCCCChhhhhhhhHHHHHHhh
Confidence 345789999999887655 688999999999999999999999643211 11111111100 00 000 00000 0
Q ss_pred ccC-CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLS-QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~-~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
... ............+.++.+++.+||+.||++|||++|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~ 278 (284)
T cd07860 238 FPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAA 278 (284)
T ss_pred cccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHH
Confidence 000 0000000112245668899999999999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex |
| >cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-23 Score=214.45 Aligned_cols=181 Identities=20% Similarity=0.253 Sum_probs=128.0
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|+..+.||+|+||.||+|+. .+++.||+|+++... ......+.+|+.++..++||+|+++++++.+++..
T Consensus 1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~ 80 (360)
T cd05627 1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM 80 (360)
T ss_pred CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence 3688889999999999999987 578999999997532 23456678899999999999999998876543311
Q ss_pred --------------------------------------------------------------ccccccccccccCc----
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQ---- 512 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~---- 512 (628)
+|||+|+.+.....
T Consensus 81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~ 160 (360)
T cd05627 81 EFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFY 160 (360)
T ss_pred eCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCcccccccccccc
Confidence 49999875422110
Q ss_pred -----------------------------ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCccc
Q 037488 513 -----------------------------SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIF 563 (628)
Q Consensus 513 -----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~ 563 (628)
.....+.+||+.|||||++.+..|+.++||||+||++|||++|++||....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~ 240 (360)
T cd05627 161 RNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSET 240 (360)
T ss_pred cccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCC
Confidence 001123579999999999999999999999999999999999999997532
Q ss_pred CCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 564 SGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
+.. ........ ......+.....+.++++++.+++. ||++|+++
T Consensus 241 ~~~-----~~~~i~~~------------~~~~~~p~~~~~s~~~~~li~~l~~-~p~~R~~~ 284 (360)
T cd05627 241 PQE-----TYRKVMNW------------KETLVFPPEVPISEKAKDLILRFCT-DSENRIGS 284 (360)
T ss_pred HHH-----HHHHHHcC------------CCceecCCCCCCCHHHHHHHHHhcc-ChhhcCCC
Confidence 211 11111000 0000000111235668899998764 99999964
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul |
| >cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-23 Score=211.00 Aligned_cols=202 Identities=18% Similarity=0.200 Sum_probs=133.4
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
..++|...+.||+|+||.||+|.. .+|+.||||+++.. .......+.+|+.++++++||||+++++++.....
T Consensus 3 ~~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 82 (336)
T cd07849 3 VGPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFND 82 (336)
T ss_pred cccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccce
Confidence 357899999999999999999986 67999999998642 23345667889999999999999999876543211
Q ss_pred ----------------------------------------------------------------cccccccccccccCcc
Q 037488 498 ----------------------------------------------------------------KADFGMAKPLLKEDQS 513 (628)
Q Consensus 498 ----------------------------------------------------------------~~DFGla~~~~~~~~~ 513 (628)
.+|||+++........
T Consensus 83 ~~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~ 162 (336)
T cd07849 83 VYIVQELMETDLYKLIKTQHLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDH 162 (336)
T ss_pred EEEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECcccceeeccccccc
Confidence 0399998865332111
Q ss_pred -cccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc----cceeecc
Q 037488 514 -LIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS----VMKVVDA 587 (628)
Q Consensus 514 -~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 587 (628)
.......||..|||||++.+ ..++.++||||+||++|||++|++||.+... ......+....... ...+.+.
T Consensus 163 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (336)
T cd07849 163 TGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDY--LHQLNLILGVLGTPSQEDLNCIISL 240 (336)
T ss_pred cCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHHcCCCCHHHHHHhhch
Confidence 11123568999999998755 5689999999999999999999999964211 11111111111110 0000000
Q ss_pred cc----c---CCcccc-hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HL----L---SQEDKH-FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~----~---~~~~~~-~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. . ...... .......+.++.+++.+||+.||++|||+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~ 289 (336)
T cd07849 241 RARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEA 289 (336)
T ss_pred hhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHH
Confidence 00 0 000000 00111235678999999999999999998764
|
Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase |
| >cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-23 Score=205.00 Aligned_cols=182 Identities=20% Similarity=0.338 Sum_probs=129.7
Q ss_pred cCCCcccccccCCccEEEEEEec-CC---cEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIH-YG---MEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~-~~---~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
..|...+.||+|+||.||+|... ++ ..||||+++.. .....+.|..|+.++++++||||+++++++.++...
T Consensus 4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv 83 (269)
T cd05065 4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMII 83 (269)
T ss_pred HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEE
Confidence 35777899999999999999863 33 36999998754 344567899999999999999999999876543311
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+++.........
T Consensus 84 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~ 163 (269)
T cd05065 84 TEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDP 163 (269)
T ss_pred EecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCccccccccCcccc
Confidence 3888887553322111
Q ss_pred ccccc---cccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 515 IQTQT---LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 515 ~~~~~---~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
..... .++..|+|||++.+..++.++|||||||++|||++ |+.||...... ....+...
T Consensus 164 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~--~~~~~i~~--------------- 226 (269)
T cd05065 164 TYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQ--DVINAIEQ--------------- 226 (269)
T ss_pred ccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHH--HHHHHHHc---------------
Confidence 11111 12467999999999999999999999999999887 99998653221 11111110
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+.+.+++..+.+++.+||+.+|++||++++|
T Consensus 227 ---~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i 261 (269)
T cd05065 227 ---DYRLPPPMDCPTALHQLMLDCWQKDRNARPKFGQI 261 (269)
T ss_pred ---CCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 00111223456779999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr |
| >cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-23 Score=206.50 Aligned_cols=181 Identities=24% Similarity=0.392 Sum_probs=129.0
Q ss_pred CCCcccccccCCccEEEEEEec------CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc---
Q 037488 428 GFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--- 497 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--- 497 (628)
+|...+.||+|+||.||+|... ....+|+|.+.... ......+.+|+.+++.++||||+++++.|..++.
T Consensus 1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 80 (290)
T cd05045 1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLL 80 (290)
T ss_pred CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEE
Confidence 4677889999999999999752 23578999886543 3345678899999999999999999876432110
Q ss_pred --------------------------------------------------------------------------------
Q 037488 498 -------------------------------------------------------------------------------- 497 (628)
Q Consensus 498 -------------------------------------------------------------------------------- 497 (628)
T Consensus 81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~nill 160 (290)
T cd05045 81 IVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLV 160 (290)
T ss_pred EEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheEEE
Confidence
Q ss_pred -------cccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccH
Q 037488 498 -------KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTL 569 (628)
Q Consensus 498 -------~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~ 569 (628)
.+|||+++...............++..|+|||++.+..++.++|||||||++|||+| |+.||.+..+. .+
T Consensus 161 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~--~~ 238 (290)
T cd05045 161 AEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPE--RL 238 (290)
T ss_pred cCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHH--HH
Confidence 039999886543322222233456788999999988889999999999999999999 99998653211 11
Q ss_pred HHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 570 KHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+... .. ....+..++.++.+++.+||+.+|++||++.|+
T Consensus 239 ~~~~~~------------~~------~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i 279 (290)
T cd05045 239 FNLLKT------------GY------RMERPENCSEEMYNLMLTCWKQEPDKRPTFADI 279 (290)
T ss_pred HHHHhC------------CC------CCCCCCCCCHHHHHHHHHHccCCcccCCCHHHH
Confidence 111110 00 111223456679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi |
| >cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-23 Score=204.50 Aligned_cols=197 Identities=22% Similarity=0.362 Sum_probs=132.7
Q ss_pred hcCCCcccccccCCccEEEEEEe-----cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCC--cc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-----HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD--FK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~ 498 (628)
...|...+.||+|+||.||+|.. .+++.||+|++........+.+.+|++++++++||||+++++++...+ ..
T Consensus 3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~ 82 (284)
T cd05081 3 ERHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 82 (284)
T ss_pred cccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCce
Confidence 34678889999999999999874 358899999997666666778999999999999999999998753211 00
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||+++......
T Consensus 83 ~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~ 162 (284)
T cd05081 83 RLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDK 162 (284)
T ss_pred EEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCcccccccCCC
Confidence 3999988653322
Q ss_pred ccc-ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 512 QSL-IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 512 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
... ......++..|+|||+..+..++.++|||||||++|||++|..|+..... .+................+.
T Consensus 163 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 236 (284)
T cd05081 163 EYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPA------EFMRMMGNDKQGQMIVYHLI 236 (284)
T ss_pred cceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcch------hhhhhcccccccccchHHHH
Confidence 111 11122345679999999988999999999999999999999877543110 01100000000000000000
Q ss_pred --CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 591 --SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 591 --~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.........+..++.++.+++.+||+.+|++||||.||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei 276 (284)
T cd05081 237 ELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSEL 276 (284)
T ss_pred HHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHH
Confidence 00001112234466789999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th |
| >cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=201.47 Aligned_cols=186 Identities=20% Similarity=0.220 Sum_probs=132.4
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc--c----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--K---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--~---- 498 (628)
++|...+.||.|++|.||+|.. .+++.+|+|.+.... ......+.+|+++++.++||||++++++|...+. .
T Consensus 1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 80 (287)
T cd06621 1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM 80 (287)
T ss_pred CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence 3678889999999999999997 568999999987543 2345678999999999999999999987643210 0
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||++.......
T Consensus 81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~- 159 (287)
T cd06621 81 EYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSL- 159 (287)
T ss_pred EecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeeccccccccccc-
Confidence 3888876543221
Q ss_pred ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCC---ccHHHHHHhhcCCccceeecccc
Q 037488 513 SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGE---MTLKHWVNDLLPISVMKVVDAHL 589 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 589 (628)
.....++..|+|||.+.+..++.++||||+||++|||++|+.||....... .....+..... . +.+
T Consensus 160 ---~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~---~-----~~~ 228 (287)
T cd06621 160 ---AGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMP---N-----PEL 228 (287)
T ss_pred ---cccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCC---c-----hhh
Confidence 123458889999999998999999999999999999999999997542211 11112211100 0 000
Q ss_pred cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
... .......+.++.+++.+||+.||++|||+.||
T Consensus 229 ~~~----~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~ei 263 (287)
T cd06621 229 KDE----PGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDM 263 (287)
T ss_pred ccC----CCCCCchHHHHHHHHHHHcCCCcccCCCHHHH
Confidence 000 00001235678999999999999999999764
|
Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-23 Score=213.39 Aligned_cols=110 Identities=25% Similarity=0.406 Sum_probs=75.6
Q ss_pred cccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcC
Q 037488 500 DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLP 578 (628)
Q Consensus 500 DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~ 578 (628)
|||+++...............|+..|||||++.+..++.++|||||||++|||++ |+.||......+. .......
T Consensus 282 DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~-~~~~~~~--- 357 (401)
T cd05107 282 DFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQ-FYNAIKR--- 357 (401)
T ss_pred ecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHH-HHHHHHc---
Confidence 8888876433222111233467889999999998889999999999999999998 8999865322111 1111000
Q ss_pred CccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 579 ISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .....+..++.++.+++.+||..+|++||+++||
T Consensus 358 ---------~------~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~el 392 (401)
T cd05107 358 ---------G------YRMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQL 392 (401)
T ss_pred ---------C------CCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 0 0111233456779999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D |
| >cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-23 Score=204.66 Aligned_cols=189 Identities=21% Similarity=0.265 Sum_probs=135.3
Q ss_pred hhHHHHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCC
Q 037488 418 TYLELFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSND 495 (628)
Q Consensus 418 ~~~~l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 495 (628)
+..+...+.+.|+..+.+|+|+||.||+|+. .+++.+|+|++..... ....+..|+.+++++ +||||+++++++...
T Consensus 7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~ 85 (282)
T cd06636 7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTED-EEEEIKLEINMLKKYSHHRNIATYYGAFIKK 85 (282)
T ss_pred hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChH-HHHHHHHHHHHHHHhcCCCcEEEEeeehhcc
Confidence 4455566778999999999999999999987 6789999999865433 335678899999998 799999999887421
Q ss_pred ------Ccc--------------------------------------------------------------------ccc
Q 037488 496 ------DFK--------------------------------------------------------------------ADF 501 (628)
Q Consensus 496 ------~~~--------------------------------------------------------------------~DF 501 (628)
+.. +||
T Consensus 86 ~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~df 165 (282)
T cd06636 86 SPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDF 165 (282)
T ss_pred cccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeC
Confidence 100 388
Q ss_pred cccccccccCcccccccccccccccCccccc-----cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhh
Q 037488 502 GMAKPLLKEDQSLIQTQTLATIGYMAPEYGR-----EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDL 576 (628)
Q Consensus 502 Gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~ 576 (628)
|+++....... ......|+..|+|||++. +..++.++|||||||++|||++|+.||....+..... ...
T Consensus 166 g~~~~~~~~~~--~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~----~~~ 239 (282)
T cd06636 166 GVSAQLDRTVG--RRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALF----LIP 239 (282)
T ss_pred cchhhhhcccc--CCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhh----hHh
Confidence 88875432211 123456999999999876 3468899999999999999999999996532211000 000
Q ss_pred cCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 577 LPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. .........++.++.+++.+||+.||++|||+.|+
T Consensus 240 ---------~~------~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~el 276 (282)
T cd06636 240 ---------RN------PPPKLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQL 276 (282)
T ss_pred ---------hC------CCCCCcccccCHHHHHHHHHHhCCChhhCcCHHHH
Confidence 00 00001112346679999999999999999998764
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea |
| >cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-23 Score=203.07 Aligned_cols=183 Identities=21% Similarity=0.374 Sum_probs=130.5
Q ss_pred hcCCCcccccccCCccEEEEEEec-CC---cEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH-YG---MEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~-~~---~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
.++|+..+.||+|+||.||+|... ++ ..+|+|+++... ....+.+.+|++++++++||||+++++++...+..
T Consensus 4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 83 (268)
T cd05063 4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMI 83 (268)
T ss_pred hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEE
Confidence 456778899999999999999863 33 379999987542 33456789999999999999999999987643321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+++........
T Consensus 84 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~ 163 (268)
T cd05063 84 ITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEG 163 (268)
T ss_pred EEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccceeccccccc
Confidence 399988765332211
Q ss_pred cc-cccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 514 LI-QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 514 ~~-~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
.. .....++..|+|||++.+..++.++|||||||++|||++ |+.||..... ..+...... .
T Consensus 164 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~-----~~~~~~i~~---------~--- 226 (268)
T cd05063 164 TYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSN-----HEVMKAIND---------G--- 226 (268)
T ss_pred ceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCH-----HHHHHHHhc---------C---
Confidence 11 111224567999999998889999999999999999998 9999865322 111111100 0
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+.+..++.++.+++.+||+.+|++||++.+|
T Consensus 227 ---~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i 260 (268)
T cd05063 227 ---FRLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDI 260 (268)
T ss_pred ---CCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence 0111122356679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored |
| >cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-23 Score=201.36 Aligned_cols=175 Identities=22% Similarity=0.413 Sum_probs=125.1
Q ss_pred ccccCCccEEEEEEec---CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----------
Q 037488 434 LIDRGGIGYVYKRRIH---YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----------- 498 (628)
Q Consensus 434 ~ig~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----------- 498 (628)
.||+|+||.||+|.+. .+..||+|++.... ....+.+.+|+.++++++||||++++++|..+...
T Consensus 2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~lv~e~~~~~~L 81 (257)
T cd05115 2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEAEALMLVMEMASGGPL 81 (257)
T ss_pred ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCeEEEEEeCCCCCH
Confidence 3899999999998753 35679999987543 33456789999999999999999999987543211
Q ss_pred -------------------------------------------------------ccccccccccccCccc-cccccccc
Q 037488 499 -------------------------------------------------------ADFGMAKPLLKEDQSL-IQTQTLAT 522 (628)
Q Consensus 499 -------------------------------------------------------~DFGla~~~~~~~~~~-~~~~~~gt 522 (628)
+|||+++......... ......++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~ 161 (257)
T cd05115 82 NKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWP 161 (257)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCCC
Confidence 3999987543322111 11122346
Q ss_pred ccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchh
Q 037488 523 IGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG 601 (628)
Q Consensus 523 ~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (628)
..|+|||++.+..++.++|||||||++||+++ |+.||....... ....+... .....+.
T Consensus 162 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~--~~~~~~~~------------------~~~~~~~ 221 (257)
T cd05115 162 LKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPE--VMSFIEQG------------------KRLDCPA 221 (257)
T ss_pred cccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHH--HHHHHHCC------------------CCCCCCC
Confidence 78999999988889999999999999999996 999997542211 11111100 0111233
Q ss_pred hhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 602 QCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 602 ~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.++.++.+++.+||+.||++||++.+|
T Consensus 222 ~~~~~l~~li~~c~~~~~~~Rp~~~~i 248 (257)
T cd05115 222 ECPPEMYALMKDCWIYKWEDRPNFAKV 248 (257)
T ss_pred CCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 456789999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho |
| >cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-23 Score=205.47 Aligned_cols=200 Identities=22% Similarity=0.269 Sum_probs=136.2
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
++|+..+.||+|+||.||+|.. .+++.||||+++.. .....+.+.+|++++++++||||+++++++..++..
T Consensus 1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e 80 (288)
T cd07833 1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFE 80 (288)
T ss_pred CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEe
Confidence 3688889999999999999987 56889999998653 233356789999999999999999999987543311
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++....... ....
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~-~~~~ 159 (288)
T cd07833 81 YVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPA-SPLT 159 (288)
T ss_pred cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCcc-cccc
Confidence 39998886543321 1223
Q ss_pred cccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHH--hhcCCccceee--cccccC-
Q 037488 518 QTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVN--DLLPISVMKVV--DAHLLS- 591 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~- 591 (628)
...|+.+|+|||++.+. .++.++|||||||++|||++|++||......+ ....... ...+....... ++....
T Consensus 160 ~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (288)
T cd07833 160 DYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDID-QLYLIQKCLGPLPPSHQELFSSNPRFAGV 238 (288)
T ss_pred CcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCCHHHhhhcccCcccccc
Confidence 45789999999999888 78999999999999999999999997532111 0100000 00000000000 000000
Q ss_pred -------CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 -------QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 -------~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
........+..++.++.+++.+||..+|++|||++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i 282 (288)
T cd07833 239 AFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDEL 282 (288)
T ss_pred ccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHH
Confidence 0000011222347889999999999999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning |
| >cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7 | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-23 Score=202.24 Aligned_cols=183 Identities=22% Similarity=0.281 Sum_probs=133.0
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|...+.||+|+||.||+|.. .+|+.||+|.++.. .....+.+.+|++++++++|+||+++++++..++..
T Consensus 2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~ 81 (267)
T cd08224 2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL 81 (267)
T ss_pred CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence 5788899999999999999987 48999999998642 233456789999999999999999998875432211
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+++.......
T Consensus 82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~ 161 (267)
T cd08224 82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT 161 (267)
T ss_pred ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccceeeeccCCCc
Confidence 38888875432211
Q ss_pred ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 513 SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
......|+..|+|||++.+..++.++|||||||++|||++|+.||.... .....+...... ..
T Consensus 162 --~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~~~~~~~~~~~------------~~ 224 (267)
T cd08224 162 --AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK---MNLYSLCKKIEK------------CD 224 (267)
T ss_pred --ccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCC---ccHHHHHhhhhc------------CC
Confidence 1233468999999999998889999999999999999999999985421 122222111100 00
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ........+.++.+++.+||..+|++|||+.+|
T Consensus 225 ~--~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~i 258 (267)
T cd08224 225 Y--PPLPADHYSEELRDLVSRCINPDPEKRPDISYV 258 (267)
T ss_pred C--CCCChhhcCHHHHHHHHHHcCCCcccCCCHHHH
Confidence 0 000111345678999999999999999998764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a |
| >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=201.16 Aligned_cols=180 Identities=21% Similarity=0.322 Sum_probs=121.1
Q ss_pred cccccCCccEEEEEEec---CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----------
Q 037488 433 NLIDRGGIGYVYKRRIH---YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---------- 498 (628)
+.||+|+||.||+|... ++..+|+|.++... ......+.+|+.++++++||||+++++++.+....
T Consensus 1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g 80 (269)
T cd05087 1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLG 80 (269)
T ss_pred CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCC
Confidence 36899999999999763 35679999986543 23345688999999999999999999876542211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++............
T Consensus 81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~ 160 (269)
T cd05087 81 DLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPD 160 (269)
T ss_pred cHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCccccccccCcceeecCC
Confidence 3999887543322211223
Q ss_pred cccccccccCccccccC-------ccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccc
Q 037488 518 QTLATIGYMAPEYGREG-------RVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~-------~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (628)
...|+..|+|||++.+. .++.++|||||||++|||++ |+.||......+ ....... .......++
T Consensus 161 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~--~~~~~~~---~~~~~~~~~-- 233 (269)
T cd05087 161 QLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQ--VLTYTVR---EQQLKLPKP-- 233 (269)
T ss_pred CcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHH--HHHHHhh---cccCCCCCC--
Confidence 34678899999998642 35889999999999999996 999996532211 1111000 000000011
Q ss_pred cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+.++.+++.+|| .+|++|||++||
T Consensus 234 --------~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l 263 (269)
T cd05087 234 --------RLKLPLSDRWYEVMQFCW-LQPEQRPSAEEV 263 (269)
T ss_pred --------ccCCCCChHHHHHHHHHh-cCcccCCCHHHH
Confidence 111123456889999999 689999999875
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells |
| >cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6 | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-23 Score=208.74 Aligned_cols=180 Identities=23% Similarity=0.293 Sum_probs=129.9
Q ss_pred CCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---------
Q 037488 429 FSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--------- 498 (628)
|.....||+|+||.||+|.. .+++.||+|+++.......+.+.+|+.+++.++||||+++++++..++..
T Consensus 23 ~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~ 102 (297)
T cd06659 23 LENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQG 102 (297)
T ss_pred HHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCC
Confidence 33445799999999999987 57899999999765444456788999999999999999999876543211
Q ss_pred --------------------------------------------------------ccccccccccccCccccccccccc
Q 037488 499 --------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLAT 522 (628)
Q Consensus 499 --------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt 522 (628)
+|||+++...... .......|+
T Consensus 103 ~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~--~~~~~~~~~ 180 (297)
T cd06659 103 GALTDIVSQTRLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDV--PKRKSLVGT 180 (297)
T ss_pred CCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHhhccccc--ccccceecC
Confidence 4999887543322 112345799
Q ss_pred ccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhh
Q 037488 523 IGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQ 602 (628)
Q Consensus 523 ~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (628)
..|+|||++.+..++.++|||||||++|||++|+.||....+. ........ .. ......+..
T Consensus 181 ~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~--~~~~~~~~---~~-------------~~~~~~~~~ 242 (297)
T cd06659 181 PYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPV--QAMKRLRD---SP-------------PPKLKNAHK 242 (297)
T ss_pred ccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHhc---cC-------------CCCccccCC
Confidence 9999999999889999999999999999999999998642211 11111000 00 000011122
Q ss_pred hHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 603 CVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 603 ~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+.++.+++.+||+.+|++||++.|+
T Consensus 243 ~~~~l~~~i~~~l~~~P~~Rps~~~l 268 (297)
T cd06659 243 ISPVLRDFLERMLTREPQERATAQEL 268 (297)
T ss_pred CCHHHHHHHHHHhcCCcccCcCHHHH
Confidence 34568899999999999999998764
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i |
| >cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-23 Score=201.42 Aligned_cols=176 Identities=24% Similarity=0.417 Sum_probs=126.2
Q ss_pred cccccCCccEEEEEEe--cC--CcEEEEEEeeccch-hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRI--HY--GMEVAVKVFDLQYR-EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~--~~--~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||.||+|.+ .+ +..+|+|.+..... ...+.+.+|+++++.++|||||++++++......
T Consensus 1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~ 80 (257)
T cd05060 1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKGEPLMLVMELAPLG 80 (257)
T ss_pred CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcCCceEEEEEeCCCC
Confidence 4699999999999975 22 37899999875433 3456789999999999999999999987543211
Q ss_pred --------------------------------------------------------ccccccccccccCccc-ccccccc
Q 037488 499 --------------------------------------------------------ADFGMAKPLLKEDQSL-IQTQTLA 521 (628)
Q Consensus 499 --------------------------------------------------------~DFGla~~~~~~~~~~-~~~~~~g 521 (628)
+|||+++......... ......+
T Consensus 81 ~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~ 160 (257)
T cd05060 81 PLLKYLKKRREIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRW 160 (257)
T ss_pred cHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccceeecCCcccccccCccc
Confidence 3999988654332211 1111224
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhch
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (628)
+..|+|||...+..++.++|||||||++|||++ |++||..... .....+.... .....+
T Consensus 161 ~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~--~~~~~~~~~~------------------~~~~~~ 220 (257)
T cd05060 161 PLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKG--AEVIAMLESG------------------ERLPRP 220 (257)
T ss_pred cccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCH--HHHHHHHHcC------------------CcCCCC
Confidence 578999999998999999999999999999998 9999975322 1111111110 001123
Q ss_pred hhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 601 GQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 601 ~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..++.++.+++.+||..||++||++.+|
T Consensus 221 ~~~~~~l~~li~~cl~~~p~~Rp~~~~l 248 (257)
T cd05060 221 EECPQEIYSIMLSCWKYRPEDRPTFSEL 248 (257)
T ss_pred CCCCHHHHHHHHHHhcCChhhCcCHHHH
Confidence 3456679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi |
| >PHA03209 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-23 Score=210.81 Aligned_cols=127 Identities=19% Similarity=0.248 Sum_probs=100.8
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
....+|...+.||+|+||.||+|+. .+++.||+|+.... ....|+.++++++|||||++++++..+...
T Consensus 63 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 136 (357)
T PHA03209 63 VASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVL 136 (357)
T ss_pred hhhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEE
Confidence 4456899999999999999999987 46788999985432 235699999999999999999877543311
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++...... ..
T Consensus 137 e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~---~~ 213 (357)
T PHA03209 137 PHYSSDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAP---AF 213 (357)
T ss_pred EccCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCccccccccCc---cc
Confidence 4999997532221 12
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCC
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPT 559 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~ 559 (628)
....||..|+|||++.+..|+.++|||||||++|||+++..|+
T Consensus 214 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~ 256 (357)
T PHA03209 214 LGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTI 256 (357)
T ss_pred ccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence 3457999999999999999999999999999999999965554
|
|
| >cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-23 Score=200.92 Aligned_cols=178 Identities=19% Similarity=0.266 Sum_probs=130.9
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
+|+..+.||+|+||.||+|.. .+++.+|||++.... ....+.+.+|++++++++||||+++++++..++..
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~ 80 (256)
T cd08220 1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY 80 (256)
T ss_pred CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence 478889999999999999886 578999999986532 33456789999999999999999998765432210
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++...... .
T Consensus 81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~---~ 157 (256)
T cd08220 81 APGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKS---K 157 (256)
T ss_pred CCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCc---c
Confidence 3777777543221 1
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
.....|+..|+|||.+.+..++.++|||||||++|+|++|+.||..... ...+...... .
T Consensus 158 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~-----~~~~~~~~~~------------~--- 217 (256)
T cd08220 158 AYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANL-----PALVLKIMSG------------T--- 217 (256)
T ss_pred ccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCch-----HHHHHHHHhc------------C---
Confidence 1235689999999999988899999999999999999999999865321 1111111000 0
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++.+++.+||+.||++|||+.|+
T Consensus 218 ~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l 250 (256)
T cd08220 218 FAPISDRYSPDLRQLILSMLNLDPSKRPQLSQI 250 (256)
T ss_pred CCCCCCCcCHHHHHHHHHHccCChhhCCCHHHH
Confidence 011122345679999999999999999999764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with |
| >cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-23 Score=201.94 Aligned_cols=168 Identities=22% Similarity=0.367 Sum_probs=117.2
Q ss_pred cccccCCccEEEEEEecC-------------CcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 433 NLIDRGGIGYVYKRRIHY-------------GMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~~~-------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
+.||+|+||.||+|.... ...||+|+++.........|.+|+.+++.++||||++++++|..+...
T Consensus 1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~ 80 (262)
T cd05077 1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI 80 (262)
T ss_pred CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE
Confidence 368999999999997521 235899988765555566788999999999999999999987543211
Q ss_pred -------------------------------------------------------------------------ccccccc
Q 037488 499 -------------------------------------------------------------------------ADFGMAK 505 (628)
Q Consensus 499 -------------------------------------------------------------------------~DFGla~ 505 (628)
+|||++.
T Consensus 81 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~ 160 (262)
T cd05077 81 MVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPI 160 (262)
T ss_pred EEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCc
Confidence 1455544
Q ss_pred cccccCcccccccccccccccCccccc-cCccCcccchhhHhHHHHHHh-hCCCCCCcccCCCccHHHHHHhhcCCccce
Q 037488 506 PLLKEDQSLIQTQTLATIGYMAPEYGR-EGRVSTNGDVYSFGIMLIETF-TRKKPTDEIFSGEMTLKHWVNDLLPISVMK 583 (628)
Q Consensus 506 ~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DVwS~Gvvl~e~l-tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (628)
.... .....|+..|||||++. +..++.++|||||||++|||+ +|+.|+......+ .......
T Consensus 161 ~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~--~~~~~~~-------- 224 (262)
T cd05077 161 TVLS------RQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAE--KERFYEG-------- 224 (262)
T ss_pred cccC------cccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhH--HHHHHhc--------
Confidence 3211 12345888999999887 466899999999999999998 5888876422111 0000000
Q ss_pred eecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 584 VVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. ......+.++.+++.+||+.||++||++.+|
T Consensus 225 --------~~----~~~~~~~~~~~~li~~cl~~dp~~Rp~~~~i 257 (262)
T cd05077 225 --------QC----MLVTPSCKELADLMTHCMNYDPNQRPFFRAI 257 (262)
T ss_pred --------Cc----cCCCCChHHHHHHHHHHcCCChhhCcCHHHH
Confidence 00 0011124568999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom |
| >cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-23 Score=206.20 Aligned_cols=184 Identities=22% Similarity=0.335 Sum_probs=130.5
Q ss_pred hhcCCCcccccccCCccEEEEEEec------CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 497 (628)
..++|...+.||+|+||.||+|... .+..||+|.++... ......+.+|+.++++++||||+++++++...+.
T Consensus 4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~ 83 (288)
T cd05061 4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP 83 (288)
T ss_pred cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence 4578899999999999999998642 24579999986433 2334567889999999999999999987543210
Q ss_pred c----------------------------------------------------------------------------ccc
Q 037488 498 K----------------------------------------------------------------------------ADF 501 (628)
Q Consensus 498 ~----------------------------------------------------------------------------~DF 501 (628)
. +||
T Consensus 84 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~~L~Df 163 (288)
T cd05061 84 TLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDF 163 (288)
T ss_pred cEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcEEECcC
Confidence 0 389
Q ss_pred cccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCc
Q 037488 502 GMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPIS 580 (628)
Q Consensus 502 Gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~ 580 (628)
|+++...............++..|+|||++.++.++.++|||||||++|||++ |+.||...... .+.....
T Consensus 164 g~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~-----~~~~~~~--- 235 (288)
T cd05061 164 GMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNE-----QVLKFVM--- 235 (288)
T ss_pred CccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHH---
Confidence 98876533222111223356788999999998899999999999999999999 78898653211 1111110
Q ss_pred cceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 581 VMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.. ....+..++..+.+++.+||+.||++|||+.++
T Consensus 236 -----~~~-------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l 271 (288)
T cd05061 236 -----DGG-------YLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEI 271 (288)
T ss_pred -----cCC-------CCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 000 001122345679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta |
| >cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-23 Score=206.03 Aligned_cols=199 Identities=23% Similarity=0.264 Sum_probs=132.9
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
++|+..+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|+++++.++||||+++++++..+...
T Consensus 1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 80 (286)
T cd07846 1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFE 80 (286)
T ss_pred CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEe
Confidence 3688889999999999999997 468999999985432 22345688999999999999999999887543321
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++...... ....
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~--~~~~ 158 (286)
T cd07846 81 FVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG--EVYT 158 (286)
T ss_pred cCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCc--cccC
Confidence 3999887653332 1123
Q ss_pred cccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHH--hhcCCccceeec------cc
Q 037488 518 QTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVN--DLLPISVMKVVD------AH 588 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~ 588 (628)
...|+.+|+|||++.+ ..++.++|||||||++|||++|++||...... ........ ...........+ ..
T Consensus 159 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (286)
T cd07846 159 DYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDI-DQLYHIIKCLGNLIPRHQEIFQKNPLFAGM 237 (286)
T ss_pred cccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchH-HHHHHHHHHhCCCchhhHHHhccchHhhcc
Confidence 4568999999999875 44788999999999999999999998642211 00011000 000000000000 00
Q ss_pred ccCCc---ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLSQE---DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~~~---~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..... .........++..+.+++.+||+.+|++||++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~i 280 (286)
T cd07846 238 RLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQL 280 (286)
T ss_pred ccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHH
Confidence 00000 00011123456779999999999999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI |
| >cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-23 Score=207.43 Aligned_cols=184 Identities=26% Similarity=0.386 Sum_probs=131.0
Q ss_pred hhcCCCcccccccCCccEEEEEEec------CCcEEEEEEeecc-chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCC
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQ-YREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDD 496 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 496 (628)
..++|+..+.||+|+||.||+|... ....+|+|.+... ..+....+.+|+++++++ +||||++++++|..+.
T Consensus 10 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~ 89 (293)
T cd05053 10 PRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEG 89 (293)
T ss_pred CHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCC
Confidence 3457888899999999999999763 2367999998753 233456688999999999 8999999998754321
Q ss_pred c-------------------------------------------------------------------------------
Q 037488 497 F------------------------------------------------------------------------------- 497 (628)
Q Consensus 497 ~------------------------------------------------------------------------------- 497 (628)
.
T Consensus 90 ~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~~~~~ 169 (293)
T cd05053 90 PLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVTEDH 169 (293)
T ss_pred CeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEEcCCC
Confidence 0
Q ss_pred ---cccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHH
Q 037488 498 ---KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWV 573 (628)
Q Consensus 498 ---~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~ 573 (628)
.+|||+++.+.............++..|+|||++.+..++.++|||||||++|||++ |..||...... ...
T Consensus 170 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~-----~~~ 244 (293)
T cd05053 170 VMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVE-----ELF 244 (293)
T ss_pred eEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHH-----HHH
Confidence 049998886543322111222346778999999988899999999999999999998 99998643211 111
Q ss_pred HhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 574 NDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.... . ......+..++.++.+++.+||+.||++||||.|+
T Consensus 245 ~~~~---------~------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ei 284 (293)
T cd05053 245 KLLK---------E------GYRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQL 284 (293)
T ss_pred HHHH---------c------CCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHH
Confidence 1000 0 00111223456679999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, |
| >cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=206.28 Aligned_cols=127 Identities=20% Similarity=0.216 Sum_probs=97.6
Q ss_pred cccccCCccEEEEEEec---CCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCC--c----------
Q 037488 433 NLIDRGGIGYVYKRRIH---YGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD--F---------- 497 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~---------- 497 (628)
..||+|+||.||+|+.. ++..||+|.++... ....+.+|++++++++||||+++++++.... .
T Consensus 7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~ 84 (317)
T cd07867 7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH 84 (317)
T ss_pred eEeccCCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC
Confidence 57999999999999863 45789999986432 2245788999999999999999988763210 0
Q ss_pred --------------------------------------------------------------------cccccccccccc
Q 037488 498 --------------------------------------------------------------------KADFGMAKPLLK 509 (628)
Q Consensus 498 --------------------------------------------------------------------~~DFGla~~~~~ 509 (628)
.+|||+|+....
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~ 164 (317)
T cd07867 85 DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNS 164 (317)
T ss_pred cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCC
Confidence 039999986533
Q ss_pred cCcc-cccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCc
Q 037488 510 EDQS-LIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDE 561 (628)
Q Consensus 510 ~~~~-~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~ 561 (628)
.... ......+||+.|+|||++.+. .++.++||||+||++|||+||++||..
T Consensus 165 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~ 218 (317)
T cd07867 165 PLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC 218 (317)
T ss_pred CcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCccc
Confidence 2211 112345799999999998764 589999999999999999999999964
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as |
| >cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-23 Score=205.54 Aligned_cols=190 Identities=21% Similarity=0.279 Sum_probs=134.1
Q ss_pred hhHHHHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCC
Q 037488 418 TYLELFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSND 495 (628)
Q Consensus 418 ~~~~l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 495 (628)
.+..+..+.++|+..+.||+|+||.||+|.. .+++.+|+|+++.... ....+.+|+.+++++ +||||++++++|...
T Consensus 9 ~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~ 87 (286)
T cd06638 9 IFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHD-IDEEIEAEYNILKALSDHPNVVKFYGMYYKK 87 (286)
T ss_pred EeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccc-hHHHHHHHHHHHHHHhcCCCeeeeeeeeeec
Confidence 3455567789999999999999999999987 5689999999864322 235577899999999 699999999876310
Q ss_pred -----Ccc----------------------------------------------------------------------cc
Q 037488 496 -----DFK----------------------------------------------------------------------AD 500 (628)
Q Consensus 496 -----~~~----------------------------------------------------------------------~D 500 (628)
... +|
T Consensus 88 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~d 167 (286)
T cd06638 88 DVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVD 167 (286)
T ss_pred ccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEcc
Confidence 000 38
Q ss_pred ccccccccccCcccccccccccccccCcccccc-----CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHh
Q 037488 501 FGMAKPLLKEDQSLIQTQTLATIGYMAPEYGRE-----GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVND 575 (628)
Q Consensus 501 FGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~ 575 (628)
||+++...... .......|++.|+|||++.. ..++.++||||+||++|||++|+.||....+. ..+...
T Consensus 168 fg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~----~~~~~~ 241 (286)
T cd06638 168 FGVSAQLTSTR--LRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPM----RALFKI 241 (286)
T ss_pred CCceeecccCC--CccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchh----HHHhhc
Confidence 98887653221 11234569999999998753 45889999999999999999999998653211 111100
Q ss_pred hcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 576 LLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ....+ ....+..++.++.+++.+||+.||++|||+.||
T Consensus 242 --~----~~~~~--------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~el 280 (286)
T cd06638 242 --P----RNPPP--------TLHQPELWSNEFNDFIRKCLTKDYEKRPTVSDL 280 (286)
T ss_pred --c----ccCCC--------cccCCCCcCHHHHHHHHHHccCCcccCCCHHHH
Confidence 0 00000 001112235568999999999999999999874
|
Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear |
| >cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-23 Score=204.97 Aligned_cols=202 Identities=18% Similarity=0.205 Sum_probs=133.3
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch-hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR-EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++++|...+.||+|+||.||+|.. .+|+.||+|++..... .....+.+|+.+++.++|+||+++++++..++..
T Consensus 3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~ 82 (291)
T cd07870 3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF 82 (291)
T ss_pred ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence 457899999999999999999986 5689999999865432 2234567899999999999999999876554211
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++....... ..
T Consensus 83 e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~--~~ 160 (291)
T cd07870 83 EYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQ--TY 160 (291)
T ss_pred ecccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEeccccccccCCCCC--CC
Confidence 39998875432221 12
Q ss_pred ccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHH-hhcCCcc--------ceeec
Q 037488 517 TQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVN-DLLPISV--------MKVVD 586 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~ 586 (628)
....+++.|+|||++.+. .++.++|||||||++|||++|+.||+...+....+..... ...+... .....
T Consensus 161 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (291)
T cd07870 161 SSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKP 240 (291)
T ss_pred CCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcccccc
Confidence 344689999999998764 5889999999999999999999999754321111111100 0000000 00000
Q ss_pred ccccCCcccchh-c--hhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 587 AHLLSQEDKHFV-I--KGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 587 ~~~~~~~~~~~~-~--~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
............ . ....+.++.+++.+|++.||++|||+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~ 285 (291)
T cd07870 241 EWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDA 285 (291)
T ss_pred hhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHH
Confidence 000000000000 0 00124568899999999999999998764
|
Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess |
| >cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=203.35 Aligned_cols=199 Identities=22% Similarity=0.214 Sum_probs=132.8
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
++|+..+.||+|+||.||+|+. .+|+.||+|++.... ....+.+.+|++++++++||||+++++++..+...
T Consensus 1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e 80 (286)
T cd07847 1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFE 80 (286)
T ss_pred CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEe
Confidence 4688889999999999999987 468999999986432 22335678999999999999999999987543311
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++....... ...
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~ 158 (286)
T cd07847 81 YCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGD--DYT 158 (286)
T ss_pred ccCccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccceecCCCcc--ccc
Confidence 38998886533221 123
Q ss_pred cccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcC--Cccceeecc------c
Q 037488 518 QTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLP--ISVMKVVDA------H 588 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~ 588 (628)
...|+..|+|||++.+ ..++.++|||||||++|||++|++||.+....+. ...+...... .......+. .
T Consensus 159 ~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (286)
T cd07847 159 DYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQ-LYLIRKTLGDLIPRHQQIFSTNQFFKGL 237 (286)
T ss_pred CcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHHHhCCCChHHhhhcccccccccc
Confidence 3468899999999876 4589999999999999999999999975432111 1111100000 000000000 0
Q ss_pred ccCCcccc---hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLSQEDKH---FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~~~~~~---~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
........ .......+..+.+++.+||+.||++|||+.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ei 280 (286)
T cd07847 238 SIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEEL 280 (286)
T ss_pred cCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHH
Confidence 00000000 00011345678999999999999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio |
| >cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-23 Score=200.43 Aligned_cols=176 Identities=27% Similarity=0.433 Sum_probs=126.7
Q ss_pred cccccCCccEEEEEEecCCcEEEEEEeeccch-hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------------
Q 037488 433 NLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYR-EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------------- 498 (628)
+.||+|+||.||+|....++.||+|++..... .....+.+|++++++++||||+++++++......
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~ 80 (251)
T cd05041 1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLL 80 (251)
T ss_pred CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHH
Confidence 36899999999999986699999999875433 3566789999999999999999999876543211
Q ss_pred ------------------------------------------------------ccccccccccccCccccccccccccc
Q 037488 499 ------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLATIG 524 (628)
Q Consensus 499 ------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt~~ 524 (628)
+|||+++...............++..
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
T cd05041 81 TFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIK 160 (251)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceec
Confidence 38888875432111111112234677
Q ss_pred ccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhh
Q 037488 525 YMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQC 603 (628)
Q Consensus 525 y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (628)
|+|||++.++.++.++||||+||++|||+| |..||....... ....... . .....+..+
T Consensus 161 y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~--~~~~~~~------------~------~~~~~~~~~ 220 (251)
T cd05041 161 WTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQ--TRERIES------------G------YRMPAPQLC 220 (251)
T ss_pred cCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHH--HHHHHhc------------C------CCCCCCccC
Confidence 999999998899999999999999999999 888886532211 1111100 0 011122345
Q ss_pred HHHHHHHhhcccCCCcccCCCCCCC
Q 037488 604 VSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 604 ~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.++.+++.+||+.+|++|||+.|+
T Consensus 221 ~~~~~~li~~~l~~~p~~Rp~~~el 245 (251)
T cd05041 221 PEEIYRLMLQCWAYDPENRPSFSEI 245 (251)
T ss_pred CHHHHHHHHHHhccChhhCcCHHHH
Confidence 6679999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k |
| >cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-22 Score=199.21 Aligned_cols=185 Identities=24% Similarity=0.345 Sum_probs=133.0
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc------hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY------REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
+|+..+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|++++++++||||+++++++.+++..
T Consensus 1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~ 80 (268)
T cd06630 1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL 80 (268)
T ss_pred CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence 477889999999999999986 679999999986432 22356789999999999999999999987654321
Q ss_pred -----------------------------------------------------------------ccccccccccccCc-
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQ- 512 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~- 512 (628)
+|||.++.......
T Consensus 81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~ 160 (268)
T cd06630 81 FVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTG 160 (268)
T ss_pred EEeccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccccccccccccccc
Confidence 38888776533211
Q ss_pred -ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 513 -SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 513 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
........||..|+|||++.+..++.++||||+||++|||++|+.||....... ....+... ..
T Consensus 161 ~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~-~~------------- 225 (268)
T cd06630 161 AGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSN-HLALIFKI-AS------------- 225 (268)
T ss_pred CCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcc-hHHHHHHH-hc-------------
Confidence 011123468999999999988889999999999999999999999986422111 11111000 00
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+...+.++.+++.+||+.+|++|||+.|+
T Consensus 226 -~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~l 261 (268)
T cd06630 226 -ATTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSREL 261 (268)
T ss_pred -cCCCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHH
Confidence 000112223345679999999999999999998764
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their |
| >KOG0584 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.3e-24 Score=214.33 Aligned_cols=172 Identities=30% Similarity=0.436 Sum_probs=129.9
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeec----cchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDL----QYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~----~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--------- 498 (628)
.+||+|+|=+||+|.+ .+|..||--.++. ...+..++|..|+++|+.|+|||||+++.++.+.+..
T Consensus 46 evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL~ 125 (632)
T KOG0584|consen 46 EVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITELF 125 (632)
T ss_pred hhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeecc
Confidence 5799999999999987 5688887543332 2345568899999999999999999999987654321
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
.|.|+|+...... .
T Consensus 126 TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~----a 201 (632)
T KOG0584|consen 126 TSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSH----A 201 (632)
T ss_pred cCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhhccc----c
Confidence 2999999765442 2
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...+|||-|||||+.. ..|++.+||||||+.++||+|+..||.++....+..+.......|..+.++-|
T Consensus 202 ksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~d---------- 270 (632)
T KOG0584|consen 202 KSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKVKD---------- 270 (632)
T ss_pred ceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcCCCHHHhhccCC----------
Confidence 3468999999999876 78999999999999999999999999887543333333322222222322222
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
++++++|.+|+.. .++|||+.|+
T Consensus 271 --------Pevr~fIekCl~~-~~~R~sa~eL 293 (632)
T KOG0584|consen 271 --------PEVREFIEKCLAT-KSERLSAKEL 293 (632)
T ss_pred --------HHHHHHHHHHhcC-chhccCHHHH
Confidence 3488999999999 8999998764
|
|
| >cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-23 Score=201.42 Aligned_cols=176 Identities=24% Similarity=0.414 Sum_probs=122.3
Q ss_pred cccccCCccEEEEEEec----CCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRIH----YGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||.||+|... .+..||+|++... .....+.+.+|+.+++.++||||++++++|...+..
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~ 80 (262)
T cd05058 1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK 80 (262)
T ss_pred CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence 46899999999999752 2467999998543 334467788999999999999999999976432100
Q ss_pred -----------------------------------------------------------ccccccccccccCcc--cccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQS--LIQT 517 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~--~~~~ 517 (628)
+|||+++........ ....
T Consensus 81 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~ 160 (262)
T cd05058 81 HGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHT 160 (262)
T ss_pred CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCccccccccCCcceeecccc
Confidence 399988754332111 1112
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhhC-CCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR-KKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...++..|+|||+..+..++.++|||||||++|||++| .+||..... ......... . ..
T Consensus 161 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~--~~~~~~~~~---~---------------~~ 220 (262)
T cd05058 161 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDS--FDITVYLLQ---G---------------RR 220 (262)
T ss_pred cCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHhc---C---------------CC
Confidence 33467889999999888999999999999999999995 566654211 111111100 0 00
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..++..+.+++.+||+.+|++||++.||
T Consensus 221 ~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i 252 (262)
T cd05058 221 LLQPEYCPDPLYEVMLSCWHPKPEMRPTFSEL 252 (262)
T ss_pred CCCCCcCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 11122345679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca |
| >cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-23 Score=205.01 Aligned_cols=181 Identities=18% Similarity=0.295 Sum_probs=129.2
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
++|+..+.||+|+||.||+|.. .+|+.||+|.++.. .......+.+|++++++++||||+++++++..+...
T Consensus 1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~ 80 (286)
T cd06622 1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEY 80 (286)
T ss_pred ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEee
Confidence 3578889999999999999987 47999999998754 233456788999999999999999998755322110
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+++.....
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~---- 156 (286)
T cd06622 81 MDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVAS---- 156 (286)
T ss_pred cCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCC----
Confidence 388887654222
Q ss_pred ccccccccccccCccccccC------ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccc
Q 037488 515 IQTQTLATIGYMAPEYGREG------RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~------~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (628)
......|+..|+|||++.+. .++.++|||||||++|||++|+.||....... ........
T Consensus 157 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~--~~~~~~~~------------ 222 (286)
T cd06622 157 LAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYAN--IFAQLSAI------------ 222 (286)
T ss_pred ccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhh--HHHHHHHH------------
Confidence 12334688999999998654 35889999999999999999999996432111 10000000
Q ss_pred ccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
... .....+..++.++.+++.+||+.+|++||++.++
T Consensus 223 ~~~---~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l 259 (286)
T cd06622 223 VDG---DPPTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQL 259 (286)
T ss_pred hhc---CCCCCCcccCHHHHHHHHHHcccCcccCCCHHHH
Confidence 000 0112233456779999999999999999998764
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=200.24 Aligned_cols=182 Identities=20% Similarity=0.251 Sum_probs=130.8
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-----hhHHHHHHHHHHHhhcccCCCcceeeeeccCCC--cc
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-----REAFKNFDIECDMMKHIRHRNLIKIISSCSNDD--FK 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~ 498 (628)
.+|...+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|++++++++||||+++++++.+.. ..
T Consensus 2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (265)
T cd06652 2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL 81 (265)
T ss_pred CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence 4688889999999999999987 568999999986321 233567889999999999999999998765421 00
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+++.......
T Consensus 82 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~ 161 (265)
T cd06652 82 SIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICL 161 (265)
T ss_pred EEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCccccccccccc
Confidence 39999886532211
Q ss_pred c-cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 513 S-LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 513 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
. .......||..|+|||++.+..++.++|||||||++|||++|+.||..... ..........
T Consensus 162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~----~~~~~~~~~~------------- 224 (265)
T cd06652 162 SGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEA----MAAIFKIATQ------------- 224 (265)
T ss_pred cccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccch----HHHHHHHhcC-------------
Confidence 1 112234699999999999888899999999999999999999999964211 1111110000
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+...+..+.+++.+|+. +|++||+++||
T Consensus 225 --~~~~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~i 258 (265)
T cd06652 225 --PTNPVLPPHVSDHCRDFLKRIFV-EAKLRPSADEL 258 (265)
T ss_pred --CCCCCCchhhCHHHHHHHHHHhc-ChhhCCCHHHH
Confidence 00111233345668899999995 89999998764
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re |
| >cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-22 Score=201.65 Aligned_cols=181 Identities=24% Similarity=0.274 Sum_probs=125.4
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHH-hhcccCCCcceeeeeccCCCcc-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDM-MKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
++|+..+.||+|+||.||+|.. .+|+.||+|+++... ......+..|+.+ ++..+||||+++++++..+...
T Consensus 1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e 80 (283)
T cd06617 1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICME 80 (283)
T ss_pred CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhh
Confidence 3688889999999999999987 579999999987542 2223445566665 6667999999999876542211
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+++......
T Consensus 81 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~-- 158 (283)
T cd06617 81 VMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSV-- 158 (283)
T ss_pred hhcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeeccccccccccc--
Confidence 3888887543221
Q ss_pred cccccccccccccCcccccc----CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccc
Q 037488 514 LIQTQTLATIGYMAPEYGRE----GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~----~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (628)
......|+..|+|||++.+ ..++.++|||||||++|||++|+.||................. .+..
T Consensus 159 -~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~---------~~~~ 228 (283)
T cd06617 159 -AKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVEEP---------SPQL 228 (283)
T ss_pred -ccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHHHHHhcC---------CCCC
Confidence 1123468999999998865 4578999999999999999999999864221111111111000 0000
Q ss_pred cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....++.++.+++.+||..+|++||++.++
T Consensus 229 ---------~~~~~~~~l~~li~~~l~~~p~~Rp~~~~i 258 (283)
T cd06617 229 ---------PAEKFSPEFQDFVNKCLKKNYKERPNYPEL 258 (283)
T ss_pred ---------CccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence 011245679999999999999999998764
|
Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs |
| >cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.3e-23 Score=209.41 Aligned_cols=196 Identities=19% Similarity=0.215 Sum_probs=130.9
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
.++|...+.||+|+||.||+|.. .+|+.||||++.... ......+.+|++++++++||||+++++++.....
T Consensus 14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 93 (342)
T cd07879 14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQ 93 (342)
T ss_pred ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCc
Confidence 37899999999999999999986 579999999986432 2234567899999999999999999987643210
Q ss_pred --------------------c--------------------------------------------ccccccccccccCcc
Q 037488 498 --------------------K--------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 498 --------------------~--------------------------------------------~DFGla~~~~~~~~~ 513 (628)
. +|||+++.....
T Consensus 94 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~--- 170 (342)
T cd07879 94 DFYLVMPYMQTDLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHADAE--- 170 (342)
T ss_pred eEEEEecccccCHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCCCCcCCCCC---
Confidence 0 388888754221
Q ss_pred cccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc---cceeecc--
Q 037488 514 LIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS---VMKVVDA-- 587 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-- 587 (628)
.....||..|+|||++.+ ..++.++|||||||++|||++|+.||.+..... .+... ....+.. +.+....
T Consensus 171 --~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~ 246 (342)
T cd07879 171 --MTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQI-LKVTGVPGPEFVQKLEDKA 246 (342)
T ss_pred --CCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHH-HHhcCCCCHHHHHHhcccc
Confidence 134568999999999876 468999999999999999999999997532111 11111 1100000 0000000
Q ss_pred --ccc---CC-ccc-chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 --HLL---SQ-EDK-HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 --~~~---~~-~~~-~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
... .. ... .....+..+.++.+++.+||+.||++||+++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~ 294 (342)
T cd07879 247 AKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEA 294 (342)
T ss_pred hHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 000 00 000 000112345668999999999999999998764
|
Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13 |
| >cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-23 Score=200.38 Aligned_cols=177 Identities=21% Similarity=0.400 Sum_probs=127.0
Q ss_pred cccccCCccEEEEEEec--CC--cEEEEEEeeccch-hHHHHHHHHHHHhhcccCCCcceeeeeccCCCc----------
Q 037488 433 NLIDRGGIGYVYKRRIH--YG--MEVAVKVFDLQYR-EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF---------- 497 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~~--~~--~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---------- 497 (628)
+.||+|++|.||+|.+. .+ ..||||.+..... ...+.+.+|++++++++||||+++++++.+...
T Consensus 1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~ 80 (257)
T cd05040 1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLTHPLMMVTELAPLG 80 (257)
T ss_pred CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcCCeEEEEEEecCCC
Confidence 36899999999999863 23 3699999976554 566789999999999999999999987543100
Q ss_pred -------------c--------------------------------------------ccccccccccccCcc-cccccc
Q 037488 498 -------------K--------------------------------------------ADFGMAKPLLKEDQS-LIQTQT 519 (628)
Q Consensus 498 -------------~--------------------------------------------~DFGla~~~~~~~~~-~~~~~~ 519 (628)
. +|||+++.+...... ......
T Consensus 81 ~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~ 160 (257)
T cd05040 81 SLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHL 160 (257)
T ss_pred cHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccccccccccceecccCC
Confidence 0 399998866432211 111234
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
.++..|+|||++.+..++.++|||||||++|||++ |+.||...... ......... .....
T Consensus 161 ~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~-----~~~~~~~~~--------------~~~~~ 221 (257)
T cd05040 161 KVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGS-----QILKKIDKE--------------GERLE 221 (257)
T ss_pred CCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHHhc--------------CCcCC
Confidence 57889999999998899999999999999999999 99999643221 111110000 00011
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+...+..+.+++.+||+.+|++|||+.|+
T Consensus 222 ~~~~~~~~~~~li~~~l~~~p~~Rps~~~~ 251 (257)
T cd05040 222 RPEACPQDIYNVMLQCWAHNPADRPTFAAL 251 (257)
T ss_pred CCccCCHHHHHHHHHHCCCCcccCCCHHHH
Confidence 122345679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and |
| >cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-23 Score=200.97 Aligned_cols=179 Identities=17% Similarity=0.265 Sum_probs=132.0
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
+|+..+.||+|+||.||++.. .+|+.||+|++.... ....+.+.+|++++++++||||+++++++......
T Consensus 1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~ 80 (256)
T cd08218 1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY 80 (256)
T ss_pred CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence 478889999999999999986 578999999987532 33456789999999999999999999876543211
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++....... ..
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~--~~ 158 (256)
T cd08218 81 CEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVE--LA 158 (256)
T ss_pred CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchh--hh
Confidence 28887765432211 11
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
....|++.|+|||+..+..++.++|||||||++|||++|+.||.... ....+.... .+..
T Consensus 159 ~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~-----~~~~~~~~~------------~~~~--- 218 (256)
T cd08218 159 RTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGN-----MKNLVLKII------------RGSY--- 218 (256)
T ss_pred hhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCC-----HHHHHHHHh------------cCCC---
Confidence 23468999999999998899999999999999999999999986421 111111111 1110
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+...+.++.+++.+||+.+|++||++.||
T Consensus 219 ~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~v 250 (256)
T cd08218 219 PPVSSHYSYDLRNLVSQLFKRNPRDRPSVNSI 250 (256)
T ss_pred CCCcccCCHHHHHHHHHHhhCChhhCcCHHHH
Confidence 11223446679999999999999999999864
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti |
| >cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-22 Score=208.15 Aligned_cols=135 Identities=22% Similarity=0.204 Sum_probs=108.9
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc---
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--- 497 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--- 497 (628)
...++|+..+.||+|+||.||+|+. .+|+.||||++... .......+.+|+.++++++||||+++++++.....
T Consensus 13 ~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 92 (353)
T cd07850 13 TVLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEE 92 (353)
T ss_pred hhhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccc
Confidence 4467899999999999999999986 57999999998642 23345667889999999999999999987642210
Q ss_pred ------------------------------------------------------------------cccccccccccccC
Q 037488 498 ------------------------------------------------------------------KADFGMAKPLLKED 511 (628)
Q Consensus 498 ------------------------------------------------------------------~~DFGla~~~~~~~ 511 (628)
.+|||+++......
T Consensus 93 ~~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~ 172 (353)
T cd07850 93 FQDVYLVMELMDANLCQVIQMDLDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF 172 (353)
T ss_pred cCcEEEEEeccCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCccceeCCCCC
Confidence 03999998653221
Q ss_pred cccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCc
Q 037488 512 QSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDE 561 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~ 561 (628)
......||..|+|||++.+..++.++||||+||++|+|++|+.||..
T Consensus 173 ---~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~ 219 (353)
T cd07850 173 ---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPG 219 (353)
T ss_pred ---CCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCC
Confidence 12345689999999999999999999999999999999999999964
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK |
| >cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=199.92 Aligned_cols=179 Identities=23% Similarity=0.320 Sum_probs=131.5
Q ss_pred CCCcccccccCCccEEEEEEec-CCcEEEEEEeeccc-----hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 428 GFSENNLIDRGGIGYVYKRRIH-YGMEVAVKVFDLQY-----REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
+|...+.||+|+||.||+|... +++.||+|.+.... .+..+.+.+|+++++.++||||+++++++..+...
T Consensus 1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv 80 (258)
T cd06632 1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIF 80 (258)
T ss_pred CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEE
Confidence 4677789999999999999874 79999999986532 23456789999999999999999999987653311
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++...... .
T Consensus 81 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~---~ 157 (258)
T cd06632 81 LELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFS---F 157 (258)
T ss_pred EEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceeccccc---c
Confidence 3888877543322 1
Q ss_pred cccccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 516 QTQTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
.....|+..|+|||.+.... ++.++|||||||++|||++|+.||..... ........ . ..
T Consensus 158 ~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~----~~~~~~~~-~--------------~~ 218 (258)
T cd06632 158 AKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEG----VAAVFKIG-R--------------SK 218 (258)
T ss_pred ccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcH----HHHHHHHH-h--------------cc
Confidence 23456899999999987766 89999999999999999999999965321 11100000 0 00
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.+|++||++.++
T Consensus 219 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~ 252 (258)
T cd06632 219 ELPPIPDHLSDEAKDFILKCLQRDPSLRPTAAEL 252 (258)
T ss_pred cCCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHH
Confidence 0111222345668999999999999999998764
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops |
| >cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-22 Score=198.94 Aligned_cols=179 Identities=21% Similarity=0.254 Sum_probs=133.1
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
+|+..+.||+|+||.||.++. .+++.+|+|.+... .....+.+.+|++++++++|+||+++++++.+++..
T Consensus 1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~ 80 (256)
T cd08221 1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY 80 (256)
T ss_pred CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence 478889999999999999886 66899999998754 244556788999999999999999999886543211
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++....... ..
T Consensus 81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~--~~ 158 (256)
T cd08221 81 ANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYS--MA 158 (256)
T ss_pred cCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEcccccc--cc
Confidence 38888876533321 22
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
....|++.|+|||+..+..++.++|||||||++|||++|+.||..... .......... ..
T Consensus 159 ~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~-----~~~~~~~~~~------------~~--- 218 (256)
T cd08221 159 ETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNP-----LNLVVKIVQG------------NY--- 218 (256)
T ss_pred cccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCH-----HHHHHHHHcC------------CC---
Confidence 345799999999999888899999999999999999999999864221 1111111110 00
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..++.++.+++.+||..+|++||++.|+
T Consensus 219 ~~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~l 250 (256)
T cd08221 219 TPVVSVYSSELISLVHSLLQQDPEKRPTADEV 250 (256)
T ss_pred CCCccccCHHHHHHHHHHcccCcccCCCHHHH
Confidence 01112345679999999999999999998764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa |
| >cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-22 Score=199.01 Aligned_cols=179 Identities=20% Similarity=0.268 Sum_probs=131.6
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-c-----
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF-K----- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-~----- 498 (628)
+|+..+.||+|++|.||++.. .+++.||+|++.... ....+.+.+|++++++++|||++++++.+...+. .
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e 80 (257)
T cd08223 1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG 80 (257)
T ss_pred CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence 478889999999999999986 568899999996532 3345668899999999999999999876543210 0
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++...... ..
T Consensus 81 ~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~--~~ 158 (257)
T cd08223 81 FCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQC--DM 158 (257)
T ss_pred ccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEecccC--Cc
Confidence 3888887653221 12
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
.....|++.|+|||+..+..++.++||||+||++|||++|+.||.... .......... +..
T Consensus 159 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~-----~~~~~~~~~~------------~~~-- 219 (257)
T cd08223 159 ASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKD-----MNSLVYRIIE------------GKL-- 219 (257)
T ss_pred cccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC-----HHHHHHHHHh------------cCC--
Confidence 234568999999999999999999999999999999999999986421 1111111100 000
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+...+.++.+++.+||+.||++|||+.++
T Consensus 220 -~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~ 251 (257)
T cd08223 220 -PPMPKDYSPELGELIATMLSKRPEKRPSVKSI 251 (257)
T ss_pred -CCCccccCHHHHHHHHHHhccCcccCCCHHHH
Confidence 01122345679999999999999999998764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. |
| >cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.7e-23 Score=204.30 Aligned_cols=191 Identities=21% Similarity=0.260 Sum_probs=134.7
Q ss_pred hhhHHHHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccC
Q 037488 417 LTYLELFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSN 494 (628)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 494 (628)
+++.++..++++|...+.||+|+||.||+|.. .+++.+|+|++..... ....+.+|+.+++++ +|||+++++++|..
T Consensus 12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~-~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~ 90 (291)
T cd06639 12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISD-VDEEIEAEYNILQSLPNHPNVVKFYGMFYK 90 (291)
T ss_pred hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEeccccc-HHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence 34455556788999999999999999999987 6789999999864322 235577899999999 89999999987643
Q ss_pred CCc------c---------------------------------------------------------------------c
Q 037488 495 DDF------K---------------------------------------------------------------------A 499 (628)
Q Consensus 495 ~~~------~---------------------------------------------------------------------~ 499 (628)
.+. . +
T Consensus 91 ~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~ 170 (291)
T cd06639 91 ADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLV 170 (291)
T ss_pred ccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEe
Confidence 210 0 3
Q ss_pred cccccccccccCcccccccccccccccCccccccC-----ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHH
Q 037488 500 DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREG-----RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVN 574 (628)
Q Consensus 500 DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~ 574 (628)
|||+++....... ......|+..|+|||++... .++.++|||||||++|||++|++||....+.. ....+..
T Consensus 171 dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~-~~~~~~~ 247 (291)
T cd06639 171 DFGVSAQLTSTRL--RRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVK-TLFKIPR 247 (291)
T ss_pred ecccchhcccccc--cccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHHH-HHHHHhc
Confidence 8888875432211 12335689999999997643 36899999999999999999999996532211 1111100
Q ss_pred hhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 575 DLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .. + ....+.....++.+++.+||+.||++||++.|+
T Consensus 248 ~----~~-----~--------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~i 284 (291)
T cd06639 248 N----PP-----P--------TLLHPEKWCRSFNHFISQCLIKDFEARPSVTHL 284 (291)
T ss_pred C----CC-----C--------CCCcccccCHHHHHHHHHHhhcChhhCcCHHHH
Confidence 0 00 0 001112234568999999999999999998764
|
Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre |
| >cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.4e-23 Score=209.02 Aligned_cols=184 Identities=20% Similarity=0.346 Sum_probs=129.5
Q ss_pred hcCCCcccccccCCccEEEEEEe------cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI------HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDF 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 497 (628)
.++|...+.||+|+||.||+|.. .+++.||||+++... ......+.+|+.++.++ +|||||+++++|...+.
T Consensus 6 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~ 85 (343)
T cd05103 6 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG 85 (343)
T ss_pred hhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCC
Confidence 46788999999999999999963 347889999997533 33456788999999999 78999999876532100
Q ss_pred --------------------------------------------------------------------------------
Q 037488 498 -------------------------------------------------------------------------------- 497 (628)
Q Consensus 498 -------------------------------------------------------------------------------- 497 (628)
T Consensus 86 ~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (343)
T cd05103 86 PLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEE 165 (343)
T ss_pred ceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhh
Confidence
Q ss_pred ------------------------------------------------------cccccccccccccCcccccccccccc
Q 037488 498 ------------------------------------------------------KADFGMAKPLLKEDQSLIQTQTLATI 523 (628)
Q Consensus 498 ------------------------------------------------------~~DFGla~~~~~~~~~~~~~~~~gt~ 523 (628)
.+|||+++...............++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~ 245 (343)
T cd05103 166 AEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPL 245 (343)
T ss_pred hhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCc
Confidence 03888887653332211222334677
Q ss_pred cccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhh
Q 037488 524 GYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQ 602 (628)
Q Consensus 524 ~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (628)
.|+|||++.+..++.++|||||||++|||++ |..||....... ......... .....+..
T Consensus 246 ~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~-~~~~~~~~~------------------~~~~~~~~ 306 (343)
T cd05103 246 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-EFCRRLKEG------------------TRMRAPDY 306 (343)
T ss_pred ceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccH-HHHHHHhcc------------------CCCCCCCC
Confidence 8999999998899999999999999999997 999986532211 111100000 00111122
Q ss_pred hHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 603 CVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 603 ~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.++++.+++.+||+.||++|||+.||
T Consensus 307 ~~~~~~~~~~~cl~~~p~~Rps~~ei 332 (343)
T cd05103 307 TTPEMYQTMLDCWHGEPSQRPTFSEL 332 (343)
T ss_pred CCHHHHHHHHHHccCChhhCcCHHHH
Confidence 34568999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp |
| >cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-22 Score=204.28 Aligned_cols=200 Identities=23% Similarity=0.212 Sum_probs=132.5
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch--hHHHHHHHHHHHhhcccCCCcceeeeeccCCCc--c-
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR--EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--K- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--~- 498 (628)
..++|+..+.||+|+||.||+|.. .+|+.||+|+++.... .....+.+|++++++++||||+++++++.+... .
T Consensus 5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 84 (309)
T cd07845 5 SVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIF 84 (309)
T ss_pred cccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEE
Confidence 456899999999999999999987 5799999999875432 123346789999999999999999987654311 0
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+++.......
T Consensus 85 lv~e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~- 163 (309)
T cd07845 85 LVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAK- 163 (309)
T ss_pred EEEecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccceeeecCCccC-
Confidence 39998886543221
Q ss_pred cccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceee----ccc
Q 037488 514 LIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVV----DAH 588 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 588 (628)
......++..|+|||++.+ ..++.++||||+||++|||++|++||....+.. .+... ....+....... +..
T Consensus 164 -~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~ 240 (309)
T cd07845 164 -PMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIE-QLDLI-IQLLGTPNESIWPGFSDLP 240 (309)
T ss_pred -CCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHH-HHhcCCCChhhchhhhccc
Confidence 1233457889999999876 458999999999999999999999997532211 11111 111111000000 000
Q ss_pred c-----cCCcc--cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 L-----LSQED--KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~-----~~~~~--~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ..... .........+.++.+++.+||+.||++|||+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~i 287 (309)
T cd07845 241 LVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEA 287 (309)
T ss_pred ccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHH
Confidence 0 00000 0000011235678999999999999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing |
| >cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-22 Score=200.81 Aligned_cols=181 Identities=22% Similarity=0.362 Sum_probs=130.7
Q ss_pred cCCCcccccccCCccEEEEEEecC----CcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIHY----GMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.+|...+.||+|+||.||+|...+ ...||||...... ....+.+.+|+.++++++||||++++++|.++...
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~lv~ 85 (270)
T cd05056 6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITENPVWIVM 85 (270)
T ss_pred hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcCCCcEEEE
Confidence 457778899999999999998632 3468999886543 44566789999999999999999999976543211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++....... ..
T Consensus 86 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~-~~ 164 (270)
T cd05056 86 ELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESY-YK 164 (270)
T ss_pred EcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceeeecccccc-ee
Confidence 38998876543321 11
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
.....++..|+|||++.+..++.++|||||||++|||++ |+.||......+ ....... .
T Consensus 165 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~--~~~~~~~------------------~ 224 (270)
T cd05056 165 ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNND--VIGRIEN------------------G 224 (270)
T ss_pred cCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHH--HHHHHHc------------------C
Confidence 122335678999999988889999999999999999996 999996542211 1111100 0
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||..+|++|||+.++
T Consensus 225 ~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~ 258 (270)
T cd05056 225 ERLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTEL 258 (270)
T ss_pred CcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 0112233456779999999999999999998763
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions |
| >cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5 | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-23 Score=205.93 Aligned_cols=180 Identities=25% Similarity=0.275 Sum_probs=129.9
Q ss_pred CCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---------
Q 037488 429 FSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--------- 498 (628)
|.....||+|+||.||++.. .+++.||||++........+.+.+|+.+++.++||||+++++.+..++..
T Consensus 24 ~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~ 103 (292)
T cd06658 24 LDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEG 103 (292)
T ss_pred HhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCC
Confidence 33346799999999999986 56899999999765555567789999999999999999988765443211
Q ss_pred --------------------------------------------------------ccccccccccccCccccccccccc
Q 037488 499 --------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLAT 522 (628)
Q Consensus 499 --------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt 522 (628)
+|||+++....... ......|+
T Consensus 104 ~~L~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~--~~~~~~~~ 181 (292)
T cd06658 104 GALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVP--KRKSLVGT 181 (292)
T ss_pred CcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcchhhcccccc--cCceeecC
Confidence 39998875432221 12345699
Q ss_pred ccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhh
Q 037488 523 IGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQ 602 (628)
Q Consensus 523 ~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (628)
..|+|||+..+..++.++|||||||++|||++|+.||....+.. ......... .+.. .....
T Consensus 182 ~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~--~~~~~~~~~--------~~~~--------~~~~~ 243 (292)
T cd06658 182 PYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQ--AMRRIRDNL--------PPRV--------KDSHK 243 (292)
T ss_pred ccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHhcC--------CCcc--------ccccc
Confidence 99999999988889999999999999999999999986422110 000011000 0000 01112
Q ss_pred hHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 603 CVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 603 ~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+..+.+++.+||..||++|||+.|+
T Consensus 244 ~~~~~~~li~~~l~~~P~~Rpt~~~i 269 (292)
T cd06658 244 VSSVLRGFLDLMLVREPSQRATAQEL 269 (292)
T ss_pred cCHHHHHHHHHHccCChhHCcCHHHH
Confidence 34568899999999999999998764
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express |
| >cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-23 Score=201.34 Aligned_cols=180 Identities=24% Similarity=0.350 Sum_probs=130.5
Q ss_pred cCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-------- 498 (628)
++|.....||+|+||.||+|....+..+|+|.+..... ..+.+.+|++++++++|||++++++++......
T Consensus 6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~ 84 (260)
T cd05069 6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTM-MPEAFLQEAQIMKKLRHDKLVPLYAVVSEEPIYIVTEFMGK 84 (260)
T ss_pred HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCc-cHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCcEEEEEcCCC
Confidence 56888889999999999999887667799998864332 345688999999999999999998876432110
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||+++....... ......
T Consensus 85 ~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~-~~~~~~ 163 (260)
T cd05069 85 GSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEY-TARQGA 163 (260)
T ss_pred CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccceEccCCcc-cccCCC
Confidence 39999876532211 111233
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
.++..|+|||+..+..++.++|||||||++|||+| |+.||.+..+. ....+..... ...
T Consensus 164 ~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~--~~~~~~~~~~------------------~~~ 223 (260)
T cd05069 164 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNR--EVLEQVERGY------------------RMP 223 (260)
T ss_pred ccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCC------------------CCC
Confidence 46788999999998899999999999999999999 89998653221 1111111000 011
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+...+..+.+++.+||+.||++||++++|
T Consensus 224 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i 253 (260)
T cd05069 224 CPQGCPESLHELMKLCWKKDPDERPTFEYI 253 (260)
T ss_pred CCcccCHHHHHHHHHHccCCcccCcCHHHH
Confidence 122345679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an |
| >PHA02882 putative serine/threonine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-23 Score=205.71 Aligned_cols=190 Identities=17% Similarity=0.171 Sum_probs=123.8
Q ss_pred hcCCCcccccccCCccEEEEEEec-C---CcEEEEEEeeccchhH-----------HHHHHHHHHHhhcccCCCcceeee
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH-Y---GMEVAVKVFDLQYREA-----------FKNFDIECDMMKHIRHRNLIKIIS 490 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~-~---~~~vavK~~~~~~~~~-----------~~~~~~E~~~l~~l~h~niv~l~~ 490 (628)
.+.|...+.||+|+||.||+|... + +..+|+|+........ ......+...+..+.|++++++++
T Consensus 11 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~ 90 (294)
T PHA02882 11 GKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYG 90 (294)
T ss_pred CCceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEE
Confidence 357889999999999999999874 3 4566777643222110 011233445566778999999887
Q ss_pred eccCCCc---------------------------------------------------------------------cccc
Q 037488 491 SCSNDDF---------------------------------------------------------------------KADF 501 (628)
Q Consensus 491 ~~~~~~~---------------------------------------------------------------------~~DF 501 (628)
++..... .+||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~~~~~l~DF 170 (294)
T PHA02882 91 CGSFKRCRMYYRFILLEKLVENTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYIIDY 170 (294)
T ss_pred eeeEecCCceEEEEEEehhccCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCcEEEEEc
Confidence 5332110 0499
Q ss_pred cccccccccCcc-----cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhh
Q 037488 502 GMAKPLLKEDQS-----LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDL 576 (628)
Q Consensus 502 Gla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~ 576 (628)
|+|+.+...... .......||+.|+|||+..+..|+.++||||+||++|||++|+.||........ ........
T Consensus 171 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~-~~~~~~~~ 249 (294)
T PHA02882 171 GIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGN-LIHAAKCD 249 (294)
T ss_pred CCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchH-HHHHhHHH
Confidence 999876432211 111234699999999999999999999999999999999999999976422211 11111100
Q ss_pred cCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 577 LPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+ ........ .....++.++.+++..||+.+|++||++.++
T Consensus 250 ~-------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l 289 (294)
T PHA02882 250 F-------IKRLHEGK-----IKIKNANKFIYDFIECVTKLSYEEKPDYDAL 289 (294)
T ss_pred H-------HHHhhhhh-----hccCCCCHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 0 00000000 0112346779999999999999999998764
|
|
| >cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-22 Score=204.55 Aligned_cols=179 Identities=23% Similarity=0.373 Sum_probs=126.1
Q ss_pred cCCCcccccccCCccEEEEEEec-CCc--EEEEEEeecc-chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIH-YGM--EVAVKVFDLQ-YREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDF---- 497 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~-~~~--~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~---- 497 (628)
++|+..+.||+|+||.||+|... ++. .+|+|.++.. .....+.+.+|++++.++ +||||+++++++.....
T Consensus 2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 81 (297)
T cd05089 2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA 81 (297)
T ss_pred ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence 46888899999999999999873 443 4788888742 334456789999999999 79999999887643110
Q ss_pred ------------------------------------------------------------------------------cc
Q 037488 498 ------------------------------------------------------------------------------KA 499 (628)
Q Consensus 498 ------------------------------------------------------------------------------~~ 499 (628)
.+
T Consensus 82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~ 161 (297)
T cd05089 82 IEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIA 161 (297)
T ss_pred EEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCCCeEEEC
Confidence 03
Q ss_pred cccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcC
Q 037488 500 DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLP 578 (628)
Q Consensus 500 DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~ 578 (628)
|||+++..... .......++..|+|||+..+..++.++|||||||++|||++ |+.||...... .+......
T Consensus 162 dfg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~-----~~~~~~~~ 233 (297)
T cd05089 162 DFGLSRGEEVY---VKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCA-----ELYEKLPQ 233 (297)
T ss_pred CcCCCccccce---eccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH-----HHHHHHhc
Confidence 88877632111 01111234567999999998899999999999999999998 99999653221 11111000
Q ss_pred CccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 579 ISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .....+..++.++.+++.+||+.+|.+|||+.++
T Consensus 234 ---------~------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i 268 (297)
T cd05089 234 ---------G------YRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQI 268 (297)
T ss_pred ---------C------CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 0 0111223456679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. |
| >cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-22 Score=201.77 Aligned_cols=179 Identities=23% Similarity=0.299 Sum_probs=131.5
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
-|...+.||+|+||.||+|.. .+++.||||.+.... ....+.+.+|+.++++++||||+++++++.+++..
T Consensus 5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 84 (277)
T cd06641 5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL 84 (277)
T ss_pred hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeC
Confidence 466778999999999999986 568999999986433 33456788999999999999999999887654321
Q ss_pred ----------------------------------------------------------ccccccccccccCccccccccc
Q 037488 499 ----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTL 520 (628)
Q Consensus 499 ----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~ 520 (628)
+|||+++....... ......
T Consensus 85 ~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~--~~~~~~ 162 (277)
T cd06641 85 GGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI--KRNTFV 162 (277)
T ss_pred CCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceecccchh--hhcccc
Confidence 38888875533211 123346
Q ss_pred ccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhch
Q 037488 521 ATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600 (628)
Q Consensus 521 gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (628)
|+.+|+|||++.+..++.++|||||||++|||++|+.||....+. .+........ ....+
T Consensus 163 ~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~-----~~~~~~~~~~---------------~~~~~ 222 (277)
T cd06641 163 GTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPM-----KVLFLIPKNN---------------PPTLE 222 (277)
T ss_pred CCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchH-----HHHHHHhcCC---------------CCCCC
Confidence 899999999998888999999999999999999999998653211 1111000000 01112
Q ss_pred hhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 601 GQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 601 ~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..++.++.+++.+||+.+|++||++.++
T Consensus 223 ~~~~~~~~~~i~~~l~~~p~~Rp~~~~~ 250 (277)
T cd06641 223 GNYSKPLKEFVEACLNKEPSFRPTAKEL 250 (277)
T ss_pred cccCHHHHHHHHHHccCChhhCcCHHHH
Confidence 2345668999999999999999998764
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int |
| >cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-22 Score=201.79 Aligned_cols=181 Identities=23% Similarity=0.234 Sum_probs=131.0
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-------- 498 (628)
.|...+.||+|++|.||++.. .+++.+|+|+++.......+.+.+|+.+++.++||||+++++++..++..
T Consensus 20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~ 99 (285)
T cd06648 20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLE 99 (285)
T ss_pred hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccC
Confidence 355567999999999999986 57899999998765555556788999999999999999999876432211
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+++....... ......|
T Consensus 100 ~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~ 177 (285)
T cd06648 100 GGALTDIVTHTRMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVP--RRKSLVG 177 (285)
T ss_pred CCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccchhhccCCc--ccccccC
Confidence 38887765432211 1133469
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchh
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG 601 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (628)
+..|+|||+..+..++.++|||||||++|||++|+.||....+ ........... .+ ....+.
T Consensus 178 ~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~-----~~~~~~~~~~~-----~~--------~~~~~~ 239 (285)
T cd06648 178 TPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPP-----LQAMKRIRDNL-----PP--------KLKNLH 239 (285)
T ss_pred CccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCH-----HHHHHHHHhcC-----CC--------CCcccc
Confidence 9999999999988899999999999999999999999864221 11111110000 00 001111
Q ss_pred hhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 602 QCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 602 ~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.++.++.+++.+||+.+|++|||+.++
T Consensus 240 ~~~~~l~~li~~~l~~~p~~Rpt~~~i 266 (285)
T cd06648 240 KVSPRLRSFLDRMLVRDPAQRATAAEL 266 (285)
T ss_pred cCCHHHHHHHHHHcccChhhCcCHHHH
Confidence 245679999999999999999998764
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun |
| >PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-23 Score=202.81 Aligned_cols=184 Identities=26% Similarity=0.353 Sum_probs=130.2
Q ss_pred CCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhH--HHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 429 FSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREA--FKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~--~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
|+..+.||+|+||+||+++. .+++.||+|++....... .....+|+.++++++||||+++++++..++..
T Consensus 1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~ 80 (260)
T PF00069_consen 1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC 80 (260)
T ss_dssp EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence 56678999999999999997 567899999998654332 23346699999999999999999887543321
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||.+...... .......
T Consensus 81 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~--~~~~~~~ 158 (260)
T PF00069_consen 81 PGGSLQDYLQKNKPLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVKLSEN--NENFNPF 158 (260)
T ss_dssp TTEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEESTST--TSEBSSS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccc
Confidence 499998754111 1223456
Q ss_pred cccccccCccccc-cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 520 LATIGYMAPEYGR-EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 520 ~gt~~y~aPE~~~-~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
.||..|+|||++. +..++.++||||+|+++|+|++|+.||..... ......... ...........
T Consensus 159 ~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~--~~~~~~~~~------------~~~~~~~~~~~ 224 (260)
T PF00069_consen 159 VGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNS--DDQLEIIEK------------ILKRPLPSSSQ 224 (260)
T ss_dssp SSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSH--HHHHHHHHH------------HHHTHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc--hhhhhhhhh------------ccccccccccc
Confidence 7999999999998 78899999999999999999999999976410 011111100 00000000001
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......++.+++.+||+.||++|||+.++
T Consensus 225 ~~~~~~~~l~~li~~~l~~~p~~R~~~~~l 254 (260)
T PF00069_consen 225 QSREKSEELRDLIKKMLSKDPEQRPSAEEL 254 (260)
T ss_dssp SHTTSHHHHHHHHHHHSSSSGGGSTTHHHH
T ss_pred ccchhHHHHHHHHHHHccCChhHCcCHHHH
Confidence 111123679999999999999999998753
|
Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A .... |
| >cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-22 Score=203.08 Aligned_cols=197 Identities=23% Similarity=0.228 Sum_probs=129.9
Q ss_pred CCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 429 FSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
|+..+.||+|++|.||+|.. .+|+.||+|++.... ....+.+.+|+++++.++|||++++++++.+++..
T Consensus 1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~ 80 (283)
T cd07835 1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL 80 (283)
T ss_pred CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence 56778999999999999987 579999999987543 22335678899999999999999999887643321
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+++....... ....
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~--~~~~ 158 (283)
T cd07835 81 DLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVR--TYTH 158 (283)
T ss_pred CcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCcc--ccCc
Confidence 38888875432211 1123
Q ss_pred ccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhc-CCc-c-------ceeeccc
Q 037488 519 TLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL-PIS-V-------MKVVDAH 588 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~-~~~-~-------~~~~~~~ 588 (628)
..++..|+|||++.+. .++.++|||||||++|||++|++||...... ........... +.. . .+.....
T Consensus 159 ~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (283)
T cd07835 159 EVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEI-DQLFRIFRTLGTPDEDVWPGVTSLPDYKPTF 237 (283)
T ss_pred cccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCChHHhhhhhhchhhhhhc
Confidence 4678999999988764 5799999999999999999999999653211 11111111100 000 0 0000000
Q ss_pred ccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...............+.++.+++.+||+.||++|||+.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~i 277 (283)
T cd07835 238 PKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAA 277 (283)
T ss_pred ccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHH
Confidence 0000000011122345678999999999999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc |
| >KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-24 Score=201.59 Aligned_cols=190 Identities=23% Similarity=0.302 Sum_probs=143.6
Q ss_pred hHHHHHhhcCCCcccccccCCccEEEEEEec------CCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeee
Q 037488 419 YLELFQATNGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISS 491 (628)
Q Consensus 419 ~~~l~~~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~ 491 (628)
..++....+++.....+-||+||.||+|-+. +.+.|-||.++.. ..-+...+..|...+..+.|||+.++.++
T Consensus 276 ~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V 355 (563)
T KOG1024|consen 276 LQELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGV 355 (563)
T ss_pred HHhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEE
Confidence 3455666677888889999999999999552 3456777887653 34557789999999999999999999998
Q ss_pred ccCCCcc-------------------------------------------------------------------------
Q 037488 492 CSNDDFK------------------------------------------------------------------------- 498 (628)
Q Consensus 492 ~~~~~~~------------------------------------------------------------------------- 498 (628)
+.++...
T Consensus 356 ~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~LqV 435 (563)
T KOG1024|consen 356 SIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQLQV 435 (563)
T ss_pred EeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhheeE
Confidence 7653211
Q ss_pred --ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHh
Q 037488 499 --ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVND 575 (628)
Q Consensus 499 --~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~ 575 (628)
+|=.++|.+.+.+........--...||+||.+....|+..+|||||||+||||+| |+.||.+..|-++ .++.
T Consensus 436 kltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPfEm--~~yl-- 511 (563)
T KOG1024|consen 436 KLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFEM--EHYL-- 511 (563)
T ss_pred EeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHHHH--HHHH--
Confidence 25666665555443333333445778999999999999999999999999999999 9999987654321 1111
Q ss_pred hcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 576 LLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..++...|-+||.++..+|..||+.+|++||+++|+
T Consensus 512 ----------------kdGyRlaQP~NCPDeLf~vMacCWallpeeRPsf~Ql 548 (563)
T KOG1024|consen 512 ----------------KDGYRLAQPFNCPDELFTVMACCWALLPEERPSFSQL 548 (563)
T ss_pred ----------------hccceecCCCCCcHHHHHHHHHHHhcCcccCCCHHHH
Confidence 2234556677899999999999999999999998764
|
|
| >cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-22 Score=201.22 Aligned_cols=183 Identities=20% Similarity=0.353 Sum_probs=130.9
Q ss_pred hcCCCcccccccCCccEEEEEEec-C---CcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH-Y---GMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~-~---~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
.++|...+.||+|+||.||+|+.. + +..+|+|.++... ....+.+.+|+.++++++||||+++++++..++..
T Consensus 3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 82 (267)
T cd05066 3 ASCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMI 82 (267)
T ss_pred HHHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEE
Confidence 356788899999999999999862 2 3479999986543 33456789999999999999999999887543321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+++........
T Consensus 83 v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~ 162 (267)
T cd05066 83 VTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEA 162 (267)
T ss_pred EEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCcccccccccce
Confidence 399998865432211
Q ss_pred cc-cccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 514 LI-QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 514 ~~-~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
.. .....++..|+|||++.+..++.++|||||||++||+++ |+.||.+....+ ........
T Consensus 163 ~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~--~~~~~~~~--------------- 225 (267)
T cd05066 163 AYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQD--VIKAIEEG--------------- 225 (267)
T ss_pred eeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHH--HHHHHhCC---------------
Confidence 11 112234678999999998899999999999999999886 999986532211 11111100
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+.+..++.++.+++.+||+.+|++||+|.++
T Consensus 226 ---~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i 259 (267)
T cd05066 226 ---YRLPAPMDCPAALHQLMLDCWQKDRNERPKFEQI 259 (267)
T ss_pred ---CcCCCCCCCCHHHHHHHHHHcccCchhCCCHHHH
Confidence 0011222356678999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul |
| >cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-22 Score=204.40 Aligned_cols=176 Identities=26% Similarity=0.328 Sum_probs=127.9
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.|...+.||+|+||.||+|+. .+++.||+|++... ..+....+.+|++++++++|||+++++++|.+++..
T Consensus 26 ~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 105 (317)
T cd06635 26 LFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVME 105 (317)
T ss_pred hhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEe
Confidence 367778999999999999986 56899999998643 233456788999999999999999999987543211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++.... ..
T Consensus 106 ~~~g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~------~~ 179 (317)
T cd06635 106 YCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASP------AN 179 (317)
T ss_pred CCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCccccCC------cc
Confidence 37887764322 12
Q ss_pred cccccccccCccccc---cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 518 QTLATIGYMAPEYGR---EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~---~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
...|+..|+|||++. ++.++.++|||||||++|||++|+.||....... ....+.....
T Consensus 180 ~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~-~~~~~~~~~~----------------- 241 (317)
T cd06635 180 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYHIAQNES----------------- 241 (317)
T ss_pred cccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHHH-HHHHHHhccC-----------------
Confidence 346899999999974 4568999999999999999999999986531111 1111111000
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......++..+.+++.+||+.+|++||++.++
T Consensus 242 -~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i 274 (317)
T cd06635 242 -PTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEEL 274 (317)
T ss_pred -CCCCCccccHHHHHHHHHHccCCcccCcCHHHH
Confidence 001112345668999999999999999998764
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron |
| >cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-22 Score=200.52 Aligned_cols=186 Identities=19% Similarity=0.298 Sum_probs=129.2
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc----------hhHHHHHHHHHHHhhcccCCCcceeeeeccCCC
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY----------REAFKNFDIECDMMKHIRHRNLIKIISSCSNDD 496 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~----------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 496 (628)
+|...+.||+|+||.||+|.. .+|+.||+|.++... ....+.+.+|+.++++++||||+++++++..++
T Consensus 2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~ 81 (272)
T cd06629 2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE 81 (272)
T ss_pred ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC
Confidence 466778999999999999986 568999999886321 112356788999999999999999999876532
Q ss_pred cc------------------------------------------------------------------cccccccccccc
Q 037488 497 FK------------------------------------------------------------------ADFGMAKPLLKE 510 (628)
Q Consensus 497 ~~------------------------------------------------------------------~DFGla~~~~~~ 510 (628)
.. +|||+++.....
T Consensus 82 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~ 161 (272)
T cd06629 82 YLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSDDI 161 (272)
T ss_pred ceEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeecccccccccc
Confidence 11 388888754322
Q ss_pred CcccccccccccccccCccccccCc--cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccc
Q 037488 511 DQSLIQTQTLATIGYMAPEYGREGR--VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588 (628)
Q Consensus 511 ~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (628)
..........|+..|+|||++.+.. ++.++||||+||++||+++|+.||.... ....+... ........+.
T Consensus 162 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~----~~~~~~~~-~~~~~~~~~~-- 234 (272)
T cd06629 162 YDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEE----AIAAMFKL-GNKRSAPPIP-- 234 (272)
T ss_pred ccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcc----hHHHHHHh-hccccCCcCC--
Confidence 1111123346899999999987654 8999999999999999999999985421 11111110 0000000000
Q ss_pred ccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......++.++.+++.+||..||++|||+.+|
T Consensus 235 --------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i 266 (272)
T cd06629 235 --------PDVSMNLSPVALDFLNACFTINPDNRPTAREL 266 (272)
T ss_pred --------ccccccCCHHHHHHHHHHhcCChhhCCCHHHH
Confidence 01112346679999999999999999998764
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte |
| >cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-22 Score=199.44 Aligned_cols=180 Identities=22% Similarity=0.331 Sum_probs=129.3
Q ss_pred cCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-------- 498 (628)
.+|+..+.||+|+||.||+|.+..++.+|+|.+..... ....|.+|++++++++||||+++++++..+...
T Consensus 4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~ 82 (256)
T cd05112 4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAM-SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFME 82 (256)
T ss_pred hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCC-CHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCC
Confidence 46777889999999999999887688999999864332 235688999999999999999999886543211
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||+++...... .......
T Consensus 83 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~-~~~~~~~ 161 (256)
T cd05112 83 HGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQ-YTSSTGT 161 (256)
T ss_pred CCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcceeecccCc-ccccCCC
Confidence 3888877543221 1111233
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
.++.+|+|||++.++.++.++||||+||++|||++ |+.||..... ......... .. ...
T Consensus 162 ~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~-----~~~~~~~~~------------~~---~~~ 221 (256)
T cd05112 162 KFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSN-----SEVVETINA------------GF---RLY 221 (256)
T ss_pred ccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCH-----HHHHHHHhC------------CC---CCC
Confidence 46778999999998899999999999999999998 9999865321 111111000 00 001
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+...+.++.+++.+||+.+|++|||+.|+
T Consensus 222 ~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~ 251 (256)
T cd05112 222 KPRLASQSVYELMQHCWKERPEDRPSFSLL 251 (256)
T ss_pred CCCCCCHHHHHHHHHHcccChhhCCCHHHH
Confidence 112235669999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ |
| >cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-23 Score=201.39 Aligned_cols=182 Identities=25% Similarity=0.394 Sum_probs=131.8
Q ss_pred hhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
..++|...+.||+|+||.||+|...+++.||||.+..... ..+.+.+|+.++++++||||+++++++..+...
T Consensus 4 ~~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~ 82 (261)
T cd05034 4 PRESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM-SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEY 82 (261)
T ss_pred chhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCcc-CHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEec
Confidence 3467888899999999999999987778899999875332 346688999999999999999999876542211
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++...... ....
T Consensus 83 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~-~~~~ 161 (261)
T cd05034 83 MSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDE-YTAR 161 (261)
T ss_pred cCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccceeccchh-hhhh
Confidence 3888887653211 1111
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
....++..|+|||.+.+..++.++||||+||++||+++ |+.||.+.... ......... .
T Consensus 162 ~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~--~~~~~~~~~------------------~ 221 (261)
T cd05034 162 EGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNR--EVLEQVERG------------------Y 221 (261)
T ss_pred hccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcC------------------C
Confidence 22335678999999998889999999999999999999 99998653211 111111000 0
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++.+++.+||+.+|++||++.++
T Consensus 222 ~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l 254 (261)
T cd05034 222 RMPRPPNCPEELYDLMLQCWDKDPEERPTFEYL 254 (261)
T ss_pred CCCCCCCCCHHHHHHHHHHcccCcccCCCHHHH
Confidence 011122345679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-24 Score=206.23 Aligned_cols=291 Identities=20% Similarity=0.236 Sum_probs=180.3
Q ss_pred CCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEccc-CCCCCCCchHHhccccc
Q 037488 58 KLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSN-NSLDGILPRAIGNLSQS 136 (628)
Q Consensus 58 ~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~~ 136 (628)
.-..|.|..|+|+.|++++|+.+++|+.|+|++|.|+.+.+ .+|.++..|..|-+.+ |+|+.+..++|+.+. +
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p-----~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~-s 141 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP-----DAFKGLASLLSLVLYGNNKITDLPKGAFGGLS-S 141 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcCh-----HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH-H
Confidence 34556666666666666666666666666666666655543 2455555555544444 555555555555543 4
Q ss_pred cceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccC
Q 037488 137 MEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGS 216 (628)
Q Consensus 137 l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 216 (628)
++.|.+.-|.+.-...+.|..+++|..|.+.+|.+......+|..+..++.+.+..|.+- ..++++.+..
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i-----cdCnL~wla~----- 211 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI-----CDCNLPWLAD----- 211 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc-----cccccchhhh-----
Confidence 445555555554444445555555555555555554322224555555555555444321 1122222211
Q ss_pred CcCcccCCCCccCCCCCcEEEccCCcCCcCCCCcc--CCCCCcE-EEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCC
Q 037488 217 NKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLL--NLKDILY-LNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGV 293 (628)
Q Consensus 217 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~--~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 293 (628)
+....|..++...-.....+.++++..+++.-+ .+.++.. +....+.....+...|..+++|++|+|++|+++.+
T Consensus 212 --~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i 289 (498)
T KOG4237|consen 212 --DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI 289 (498)
T ss_pred --HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh
Confidence 111233345555555555566666666543222 1222221 22222222223335689999999999999999999
Q ss_pred CccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecC
Q 037488 294 IPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEI 366 (628)
Q Consensus 294 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~ 366 (628)
-+.+|.++..+++|.|..|++...-...|.++..|+.|+|.+|+|+.+.|..|..+.+|.+|++-.|++-...
T Consensus 290 ~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 290 EDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred hhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 9999999999999999999998777788999999999999999999999999999999999999999886543
|
|
| >cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-22 Score=197.78 Aligned_cols=184 Identities=24% Similarity=0.303 Sum_probs=132.4
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch--hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR--EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
+|...+.||+|+||.||+|.. .+++.||+|.++.... ...+.+.+|+.++++++|+||+++++++...+..
T Consensus 1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~ 80 (264)
T cd06626 1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEY 80 (264)
T ss_pred CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEec
Confidence 477889999999999999986 5789999999976543 3567899999999999999999999876443211
Q ss_pred ------------------------------------------------------------ccccccccccccCcccc--c
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLI--Q 516 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~--~ 516 (628)
+|||++........... .
T Consensus 81 ~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~ 160 (264)
T cd06626 81 CSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEV 160 (264)
T ss_pred CCCCcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccc
Confidence 38888876543322110 1
Q ss_pred ccccccccccCccccccCc---cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 517 TQTLATIGYMAPEYGREGR---VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~---~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
....|+..|+|||++.+.. ++.++|||||||++|||++|+.||........ ....... ..
T Consensus 161 ~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~-~~~~~~~----------------~~ 223 (264)
T cd06626 161 QSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQ-IMFHVGA----------------GH 223 (264)
T ss_pred cCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHH-HHHHHhc----------------CC
Confidence 1346889999999998766 89999999999999999999999965321110 1000000 00
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+....++..+.+++.+||+.+|++|||+.|+
T Consensus 224 ~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~i 258 (264)
T cd06626 224 KPPIPDSLQLSPEGKDFLDRCLESDPKKRPTASEL 258 (264)
T ss_pred CCCCCcccccCHHHHHHHHHHccCCcccCCCHHHH
Confidence 00001111235668899999999999999998764
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4 |
| >cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-22 Score=205.33 Aligned_cols=184 Identities=24% Similarity=0.377 Sum_probs=131.0
Q ss_pred hhcCCCcccccccCCccEEEEEEe--------cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcc-cCCCcceeeeeccC
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI--------HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHI-RHRNLIKIISSCSN 494 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~--------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 494 (628)
..++|...+.||+|+||.||+|+. .++..||+|.++... ....+.+.+|+.+++.+ +||||+++++++..
T Consensus 13 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~ 92 (304)
T cd05101 13 SRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 92 (304)
T ss_pred cHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEec
Confidence 356778889999999999999863 134579999986432 34456789999999999 89999999886543
Q ss_pred CCcc----------------------------------------------------------------------------
Q 037488 495 DDFK---------------------------------------------------------------------------- 498 (628)
Q Consensus 495 ~~~~---------------------------------------------------------------------------- 498 (628)
+...
T Consensus 93 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nili~~ 172 (304)
T cd05101 93 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTE 172 (304)
T ss_pred CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceEEEcC
Confidence 2100
Q ss_pred ------ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHH
Q 037488 499 ------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKH 571 (628)
Q Consensus 499 ------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~ 571 (628)
+|||+|+...............++..|+|||++.+..++.++|||||||++|||++ |..||.... ...
T Consensus 173 ~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~-----~~~ 247 (304)
T cd05101 173 NNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP-----VEE 247 (304)
T ss_pred CCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC-----HHH
Confidence 38888876533222212223356788999999998899999999999999999998 788886431 112
Q ss_pred HHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 572 WVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+....... .....+..++.++.+++.+||+.+|++|||+.||
T Consensus 248 ~~~~~~~~---------------~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~ 289 (304)
T cd05101 248 LFKLLKEG---------------HRMDKPANCTNELYMMMRDCWHAIPSHRPTFKQL 289 (304)
T ss_pred HHHHHHcC---------------CcCCCCCCCCHHHHHHHHHHcccChhhCCCHHHH
Confidence 21111000 0111223456779999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-22 Score=205.76 Aligned_cols=183 Identities=24% Similarity=0.378 Sum_probs=128.3
Q ss_pred hcCCCcccccccCCccEEEEEEec--------CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCC
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH--------YGMEVAVKVFDLQY-REAFKNFDIECDMMKHI-RHRNLIKIISSCSND 495 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 495 (628)
.++|...+.||+|+||.||+|+.. +++.+|+|.++... ......+.+|+++++++ +||||++++++|..+
T Consensus 17 ~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~ 96 (307)
T cd05098 17 RDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 96 (307)
T ss_pred hHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC
Confidence 356888899999999999998742 23579999997542 33456788899999999 899999999865431
Q ss_pred Cc--------------------------------------c---------------------------------------
Q 037488 496 DF--------------------------------------K--------------------------------------- 498 (628)
Q Consensus 496 ~~--------------------------------------~--------------------------------------- 498 (628)
+. .
T Consensus 97 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~ 176 (307)
T cd05098 97 GPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTED 176 (307)
T ss_pred CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheEEcCC
Confidence 10 0
Q ss_pred -----ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHH
Q 037488 499 -----ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHW 572 (628)
Q Consensus 499 -----~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~ 572 (628)
+|||.|+...............++..|||||++.+..++.++||||+||++|||++ |+.||.... ....
T Consensus 177 ~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~-----~~~~ 251 (307)
T cd05098 177 NVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP-----VEEL 251 (307)
T ss_pred CcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCC-----HHHH
Confidence 38888775432211111122235578999999998889999999999999999998 888886421 1111
Q ss_pred HHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 573 VNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...... ......+..++.++.+++.+||..+|++|||+.||
T Consensus 252 ~~~~~~---------------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev 292 (307)
T cd05098 252 FKLLKE---------------GHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQL 292 (307)
T ss_pred HHHHHc---------------CCCCCCCCcCCHHHHHHHHHHcccChhhCcCHHHH
Confidence 111000 00112233456779999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-22 Score=199.05 Aligned_cols=183 Identities=21% Similarity=0.236 Sum_probs=131.1
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
++|+..+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|++++++++||||+++++++..+...
T Consensus 1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~ 80 (265)
T cd06605 1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEY 80 (265)
T ss_pred CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEe
Confidence 3577788999999999999987 468999999987653 34456788999999999999999988765432110
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||.+....... .
T Consensus 81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~----~ 156 (265)
T cd06605 81 MDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSL----A 156 (265)
T ss_pred cCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhhHHHH----h
Confidence 2666665442211 1
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
....|+..|+|||++.+..++.++|||||||++|+|++|+.||.................... . .
T Consensus 157 ~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~------------~---~ 221 (265)
T cd06605 157 KTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNE------------P---P 221 (265)
T ss_pred hcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcC------------C---C
Confidence 125688999999999999999999999999999999999999965422112222222111100 0 0
Q ss_pred hhchhh-hHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQ-CVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~-~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..+.. .+.++.+++.+||..||++|||+.|+
T Consensus 222 ~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l 254 (265)
T cd06605 222 PRLPSGKFSPDFQDFVNLCLIKDPRERPSYKEL 254 (265)
T ss_pred CCCChhhcCHHHHHHHHHHcCCCchhCcCHHHH
Confidence 011111 45668999999999999999998764
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity |
| >KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-22 Score=173.18 Aligned_cols=198 Identities=21% Similarity=0.185 Sum_probs=133.1
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
..|...+.||||+||+||+|+. .+++.||+|+++..+ ........+|+.+++.++|.|||+++++...+...
T Consensus 2 ~~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe 81 (292)
T KOG0662|consen 2 QKYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_pred cchHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHH
Confidence 3577788999999999999985 679999999997643 33456789999999999999999998764332211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+||.+...... .+
T Consensus 82 ~cdqdlkkyfdslng~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglarafgipvrc--ys 159 (292)
T KOG0662|consen 82 FCDQDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRC--YS 159 (292)
T ss_pred HhhHHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhhhcCCceEe--ee
Confidence 599999976443221 24
Q ss_pred cccccccccCccccccCc-cCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhc-C--Ccc---ceeecccc
Q 037488 518 QTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLL-P--ISV---MKVVDAHL 589 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~-~--~~~---~~~~~~~~ 589 (628)
..+.|.||.+|.++-|.+ |++..|+||.||++.|+.. |++-|.+..- ...+.+..+..- + +.+ ....|...
T Consensus 160 aevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dv-ddqlkrif~~lg~p~ed~wps~t~lpdyk~ 238 (292)
T KOG0662|consen 160 AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDV-DDQLKRIFRLLGTPTEDQWPSMTKLPDYKP 238 (292)
T ss_pred ceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcH-HHHHHHHHHHhCCCccccCCccccCCCCcc
Confidence 567999999999998866 8999999999999999987 5665654221 122333322211 1 111 11111111
Q ss_pred cCCcccc---hhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 590 LSQEDKH---FVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 590 ~~~~~~~---~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
...++.. ..+-+.....-.+++.+.+.-+|.+|.++++
T Consensus 239 yp~ypattswsqivp~lns~grdllqkll~cnp~qrisaea 279 (292)
T KOG0662|consen 239 YPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEA 279 (292)
T ss_pred cCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHH
Confidence 1111100 0011123345678999999999999999764
|
|
| >cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-22 Score=199.95 Aligned_cols=179 Identities=25% Similarity=0.356 Sum_probs=130.3
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc-chhHHHHHHHHHHHhhccc---CCCcceeeeeccCCCcc----
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIR---HRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~---- 498 (628)
.|+..+.||+|+||.||+|.. .+++.||+|.++.. .....+.+.+|++++++++ |||+++++++|..+...
T Consensus 2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~ 81 (277)
T cd06917 2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIM 81 (277)
T ss_pred hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEE
Confidence 477788999999999999987 67999999998754 2334567889999999997 99999999977543311
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||++........ ...
T Consensus 82 e~~~~~~L~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~--~~~ 159 (277)
T cd06917 82 EYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSS--KRS 159 (277)
T ss_pred ecCCCCcHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCcc--ccc
Confidence 39998886543321 123
Q ss_pred cccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 518 QTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...|+..|+|||++.++ .++.++|||||||++|||++|+.||...... ..... ..... .
T Consensus 160 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~-----~~~~~---------~~~~~------~ 219 (277)
T cd06917 160 TFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAF-----RAMML---------IPKSK------P 219 (277)
T ss_pred cccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChh-----hhhhc---------cccCC------C
Confidence 45699999999998754 4789999999999999999999999653211 11000 00000 0
Q ss_pred hhchh-hhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKG-QCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~-~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+. ..+.++.+++.+||+.||++||++.|+
T Consensus 220 ~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~i 252 (277)
T cd06917 220 PRLEDNGYSKLLREFVAACLDEEPKERLSAEEL 252 (277)
T ss_pred CCCCcccCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence 00111 145679999999999999999998764
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent |
| >cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.8e-23 Score=201.79 Aligned_cols=176 Identities=26% Similarity=0.474 Sum_probs=123.7
Q ss_pred cccccCCccEEEEEEecC-------CcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 433 NLIDRGGIGYVYKRRIHY-------GMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~~~-------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
+.||+|+||.||+|+..+ ++.+|||.+.... ......+.+|+.+++.++||||++++++|...+..
T Consensus 1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~ 80 (269)
T cd05044 1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL 80 (269)
T ss_pred CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence 368999999999998632 2679999886533 23456788999999999999999999876542210
Q ss_pred ------------------------------------------------------------------------cccccccc
Q 037488 499 ------------------------------------------------------------------------ADFGMAKP 506 (628)
Q Consensus 499 ------------------------------------------------------------------------~DFGla~~ 506 (628)
+|||+++.
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~ 160 (269)
T cd05044 81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARD 160 (269)
T ss_pred cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccccc
Confidence 26666654
Q ss_pred ccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceee
Q 037488 507 LLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVV 585 (628)
Q Consensus 507 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (628)
..............++..|+|||++.++.++.++|||||||++|||+| |+.||..... .........
T Consensus 161 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~--~~~~~~~~~---------- 228 (269)
T cd05044 161 IYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNN--QEVLQHVTA---------- 228 (269)
T ss_pred cccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCH--HHHHHHHhc----------
Confidence 432211111223346788999999999999999999999999999998 9999864321 111111000
Q ss_pred cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+...+.++.+++.+||+.+|++||+++++
T Consensus 229 --------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i 263 (269)
T cd05044 229 --------GGRLQKPENCPDKIYQLMTNCWAQDPSERPTFDRI 263 (269)
T ss_pred --------CCccCCcccchHHHHHHHHHHcCCCcccCCCHHHH
Confidence 00112223456779999999999999999998764
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male |
| >cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-22 Score=198.37 Aligned_cols=176 Identities=26% Similarity=0.383 Sum_probs=131.0
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
.++|...+.||.|+||.||+|... |+.||||.++.... ..+++.+|+.++++++|+||+++++++..++..
T Consensus 5 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~ 82 (256)
T cd05039 5 SKELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYM 82 (256)
T ss_pred hhhccceeeeecCCCceEEEEEec-CcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEec
Confidence 457888899999999999999876 88899999976544 457789999999999999999999987532211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||.++...... .
T Consensus 83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~-----~ 157 (256)
T cd05039 83 AKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQ-----D 157 (256)
T ss_pred CCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEccccccccccccc-----c
Confidence 3888887652221 1
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...++..|+|||++.++.++.++|||||||++|||++ |+.||...... .+....... ..
T Consensus 158 ~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~~~~~------------------~~ 217 (256)
T cd05039 158 SGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DVVPHVEKG------------------YR 217 (256)
T ss_pred cCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHhcC------------------CC
Confidence 2345678999999998899999999999999999997 99998643111 111111000 00
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..++.++.+++.+||..+|++|||+.|+
T Consensus 218 ~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l 249 (256)
T cd05039 218 MEAPEGCPPEVYKVMKDCWELDPAKRPTFKQL 249 (256)
T ss_pred CCCccCCCHHHHHHHHHHhccChhhCcCHHHH
Confidence 11122346779999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk |
| >cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-22 Score=204.19 Aligned_cols=180 Identities=25% Similarity=0.409 Sum_probs=125.8
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCc--EEEEEEeecc-chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc--
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGM--EVAVKVFDLQ-YREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~--~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~-- 498 (628)
.++|+..+.||+|+||.||+|.. .++. .+|+|.++.. .....+.+.+|++++.++ +||||+++++++..++..
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~l 85 (303)
T cd05088 6 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL 85 (303)
T ss_pred hhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceE
Confidence 35788889999999999999986 4454 4688877643 233456788999999999 899999999876432100
Q ss_pred --------------------------------------------------------------------------------
Q 037488 499 -------------------------------------------------------------------------------- 498 (628)
Q Consensus 499 -------------------------------------------------------------------------------- 498 (628)
T Consensus 86 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~~~kl 165 (303)
T cd05088 86 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKI 165 (303)
T ss_pred EEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEecCCCcEEe
Confidence
Q ss_pred ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhc
Q 037488 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLL 577 (628)
Q Consensus 499 ~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~ 577 (628)
+|||+++..... .......++..|+|||++.+..++.++|||||||++|||+| |..||...... ......
T Consensus 166 ~dfg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~-----~~~~~~- 236 (303)
T cd05088 166 ADFGLSRGQEVY---VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA-----ELYEKL- 236 (303)
T ss_pred CccccCcccchh---hhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChH-----HHHHHH-
Confidence 388877632111 11112235678999999988889999999999999999998 99998643211 111110
Q ss_pred CCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 578 PISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.. .....+..++.++.+++.+||+.+|++||++.++
T Consensus 237 ~~~--------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i 273 (303)
T cd05088 237 PQG--------------YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQI 273 (303)
T ss_pred hcC--------------CcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 000 0011122345668999999999999999998763
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A |
| >cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-22 Score=201.01 Aligned_cols=180 Identities=22% Similarity=0.371 Sum_probs=127.9
Q ss_pred CCcccccccCCccEEEEEEec----CCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCC-------
Q 037488 429 FSENNLIDRGGIGYVYKRRIH----YGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSND------- 495 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------- 495 (628)
|...+.||+|+||.||+|.+. +++.||||++... .....+.+.+|++++++++||||+++++++...
T Consensus 1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~ 80 (273)
T cd05074 1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP 80 (273)
T ss_pred CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence 556788999999999999752 4789999998653 234456788999999999999999999865321
Q ss_pred ------------Cc-----------------------------------------------------------ccccccc
Q 037488 496 ------------DF-----------------------------------------------------------KADFGMA 504 (628)
Q Consensus 496 ------------~~-----------------------------------------------------------~~DFGla 504 (628)
+. .+|||++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg~~ 160 (273)
T cd05074 81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLS 160 (273)
T ss_pred ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECccccc
Confidence 00 0399988
Q ss_pred ccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccce
Q 037488 505 KPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMK 583 (628)
Q Consensus 505 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (628)
+...............++..|++||.+.+..++.++|||||||++|||++ |++||..... .....+.... .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~--~~~~~~~~~~---~--- 232 (273)
T cd05074 161 KKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVEN--SEIYNYLIKG---N--- 232 (273)
T ss_pred ccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCH--HHHHHHHHcC---C---
Confidence 86533221111223346778999999988889999999999999999999 8899864321 1111111100 0
Q ss_pred eecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 584 VVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++..+.+++.+||+.+|++|||+.|+
T Consensus 233 ------------~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~ 265 (273)
T cd05074 233 ------------RLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHL 265 (273)
T ss_pred ------------cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 001112345679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac |
| >KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-24 Score=228.89 Aligned_cols=185 Identities=24% Similarity=0.321 Sum_probs=138.1
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch--hHHHHHHHHHHHhhcccCCCcceeeee---------
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR--EAFKNFDIECDMMKHIRHRNLIKIISS--------- 491 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~--------- 491 (628)
..+-++.....||.|.||.||-|.. .+|...|+|.++.+.. ...+...+|..++..++|||+|+.+|+
T Consensus 1232 nV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~I 1311 (1509)
T KOG4645|consen 1232 NVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYI 1311 (1509)
T ss_pred cceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHH
Confidence 4456777888999999999999875 7899999999876532 334567899999999999999999884
Q ss_pred ----ccCCCcc-----------------------------------------------------ccccccccccccCcc-
Q 037488 492 ----CSNDDFK-----------------------------------------------------ADFGMAKPLLKEDQS- 513 (628)
Q Consensus 492 ----~~~~~~~-----------------------------------------------------~DFGla~~~~~~~~~- 513 (628)
|.++..- .|||.|..+....+.
T Consensus 1312 FMEyC~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~ 1391 (1509)
T KOG4645|consen 1312 FMEYCEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTM 1391 (1509)
T ss_pred HHHHhccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCCcEEeecccceeEecCchhcC
Confidence 4443211 399999977554321
Q ss_pred -cccccccccccccCccccccCc---cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccc
Q 037488 514 -LIQTQTLATIGYMAPEYGREGR---VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589 (628)
Q Consensus 514 -~~~~~~~gt~~y~aPE~~~~~~---~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (628)
......+||+.|||||++.+.. ..-++||||+|||..||+||+.||.....+-..+-+. -
T Consensus 1392 ~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy~V----------------~ 1455 (1509)
T KOG4645|consen 1392 PGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMYHV----------------A 1455 (1509)
T ss_pred CHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccchhHHHhHH----------------h
Confidence 1223567999999999998744 4678999999999999999999997643322111111 1
Q ss_pred cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
.+ ..+..|...+++..+++.+|+..||++|.++.|
T Consensus 1456 ~g---h~Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~q 1490 (1509)
T KOG4645|consen 1456 AG---HKPQIPERLSSEGRDFLEHCLEQDPKMRWTASQ 1490 (1509)
T ss_pred cc---CCCCCchhhhHhHHHHHHHHHhcCchhhhHHHH
Confidence 11 123455567889999999999999999998854
|
|
| >cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-22 Score=203.50 Aligned_cols=132 Identities=19% Similarity=0.256 Sum_probs=95.4
Q ss_pred cccccccC--CccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 431 ENNLIDRG--GIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 431 ~~~~ig~G--~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
..++||+| +||+||++.. .+|+.||+|+++... ....+.+.+|+++++.++|||||+++++|..++..
T Consensus 2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~ 81 (327)
T cd08227 2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM 81 (327)
T ss_pred hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEecc
Confidence 34689999 6789999986 679999999997542 23345677899999999999999999877543321
Q ss_pred -------------------------------------------------------------ccccccccccccCcc----
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQS---- 513 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~---- 513 (628)
+|||.+.........
T Consensus 82 ~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 161 (327)
T cd08227 82 AYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVV 161 (327)
T ss_pred CCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchhhcccccccccccc
Confidence 133332221110000
Q ss_pred -cccccccccccccCcccccc--CccCcccchhhHhHHHHHHhhCCCCCCcc
Q 037488 514 -LIQTQTLATIGYMAPEYGRE--GRVSTNGDVYSFGIMLIETFTRKKPTDEI 562 (628)
Q Consensus 514 -~~~~~~~gt~~y~aPE~~~~--~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~ 562 (628)
.......++..|+|||++.+ ..|+.++|||||||++|||++|+.||...
T Consensus 162 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 213 (327)
T cd08227 162 HDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDM 213 (327)
T ss_pred ccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence 00112347788999999876 45899999999999999999999999753
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype |
| >cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-22 Score=201.74 Aligned_cols=182 Identities=20% Similarity=0.220 Sum_probs=129.6
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|...+.||+|+||.||++.. .+++.||+|.+.... ......+.+|+++++.++||||+++++.+..++..
T Consensus 1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ 80 (305)
T cd05609 1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM 80 (305)
T ss_pred CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence 3688889999999999999987 568899999987543 23356788999999999999999999877654321
Q ss_pred --------------------------------------------------------------ccccccccccccCc----
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQ---- 512 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~---- 512 (628)
+|||+++.......
T Consensus 81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~ 160 (305)
T cd05609 81 EYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLY 160 (305)
T ss_pred ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccccCcCcccccc
Confidence 39998874211100
Q ss_pred ---------ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccce
Q 037488 513 ---------SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMK 583 (628)
Q Consensus 513 ---------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (628)
........|+..|+|||++.+..++.++|||||||++|||++|+.||.+... ..+.......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~-----~~~~~~~~~~---- 231 (305)
T cd05609 161 EGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTP-----EELFGQVISD---- 231 (305)
T ss_pred ccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHhc----
Confidence 0011123588999999999888899999999999999999999999964321 1111111000
Q ss_pred eecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 584 VVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
... .+.....++.++.+++.+||+.||++||++.
T Consensus 232 --------~~~-~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~ 265 (305)
T cd05609 232 --------DIE-WPEGDEALPADAQDLISRLLRQNPLERLGTG 265 (305)
T ss_pred --------ccC-CCCccccCCHHHHHHHHHHhccChhhccCcc
Confidence 000 0001113456689999999999999999864
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a |
| >cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-22 Score=206.97 Aligned_cols=201 Identities=21% Similarity=0.219 Sum_probs=133.8
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
.++|+..+.||+|+||.||+|.. .+|+.||+|++.... ....+.+.+|+.++++++||||+++++++.....
T Consensus 4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 83 (334)
T cd07855 4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDV 83 (334)
T ss_pred hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceE
Confidence 47899999999999999999986 579999999986532 2345667889999999999999998876542110
Q ss_pred ----------------------------------------------------------------cccccccccccccCcc
Q 037488 498 ----------------------------------------------------------------KADFGMAKPLLKEDQS 513 (628)
Q Consensus 498 ----------------------------------------------------------------~~DFGla~~~~~~~~~ 513 (628)
.+|||+++........
T Consensus 84 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~ 163 (334)
T cd07855 84 YVVMDLMESDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTE 163 (334)
T ss_pred EEEEehhhhhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEecccccceeecccCcC
Confidence 0499998765332211
Q ss_pred --cccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceee----c
Q 037488 514 --LIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVV----D 586 (628)
Q Consensus 514 --~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 586 (628)
......+|+.+|+|||++.+ ..++.++|||||||++|||++|++||.+..... ................. .
T Consensus 164 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~ 241 (334)
T cd07855 164 HKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVH--QLKLILSVLGSPSEEVLNRIGS 241 (334)
T ss_pred CCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHH--HHHHHHHHhCCChhHhhhhhch
Confidence 11134579999999999865 468999999999999999999999996532211 11111111110000000 0
Q ss_pred cc-------ccCCcccc-hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 587 AH-------LLSQEDKH-FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 587 ~~-------~~~~~~~~-~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. ........ .......+.++.+++.+||+.||++|||+.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~ 291 (334)
T cd07855 242 DRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQA 291 (334)
T ss_pred hhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 00 00000000 01112346779999999999999999998753
|
Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the |
| >cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-22 Score=205.01 Aligned_cols=200 Identities=23% Similarity=0.219 Sum_probs=134.0
Q ss_pred HHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCC-cc
Q 037488 423 FQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD-FK 498 (628)
Q Consensus 423 ~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~ 498 (628)
...+++|+..+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|++++++++||||+++++++.... ..
T Consensus 6 ~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~ 85 (328)
T cd07856 6 FEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDI 85 (328)
T ss_pred eccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcE
Confidence 45678999999999999999999986 57999999998542 2234566789999999999999999999874321 10
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||.++.....
T Consensus 86 ~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~---- 161 (328)
T cd07856 86 YFVTELLGTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQDPQ---- 161 (328)
T ss_pred EEEeehhccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCccccccccCCC----
Confidence 388887753221
Q ss_pred ccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhh--cCCccc-eeecc---
Q 037488 515 IQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDL--LPISVM-KVVDA--- 587 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~--- 587 (628)
.....++..|+|||++.+ ..++.++|||||||++|||++|++||....... ....+.... .+..+. ...+.
T Consensus 162 -~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (328)
T cd07856 162 -MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVN-QFSIITDLLGTPPDDVINTICSENTL 239 (328)
T ss_pred -cCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCCHHHHHhccchhhH
Confidence 133568899999998766 568999999999999999999999996532210 011111000 000000 00000
Q ss_pred ----cccCCcccc-hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 ----HLLSQEDKH-FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ----~~~~~~~~~-~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......... ......++.++.+++.+||+.+|++|||+.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~el 285 (328)
T cd07856 240 RFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEA 285 (328)
T ss_pred HHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 000000000 00112345779999999999999999998764
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U |
| >cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-22 Score=201.52 Aligned_cols=167 Identities=22% Similarity=0.343 Sum_probs=116.1
Q ss_pred ccccCCccEEEEEEecC-------------------------CcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCccee
Q 037488 434 LIDRGGIGYVYKRRIHY-------------------------GMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKI 488 (628)
Q Consensus 434 ~ig~G~~g~V~~~~~~~-------------------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 488 (628)
.||+|+||.||+|.... ...||+|+++.........|.+|+.+++.++||||+++
T Consensus 2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~ 81 (274)
T cd05076 2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV 81 (274)
T ss_pred CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence 68999999999987411 23589999876555555678899999999999999999
Q ss_pred eeeccCCCcc----------------------------------------------------------------------
Q 037488 489 ISSCSNDDFK---------------------------------------------------------------------- 498 (628)
Q Consensus 489 ~~~~~~~~~~---------------------------------------------------------------------- 498 (628)
+++|.++...
T Consensus 82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~ 161 (274)
T cd05076 82 HGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSP 161 (274)
T ss_pred EEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCccc
Confidence 9987654321
Q ss_pred ----ccccccccccccCcccccccccccccccCcccccc-CccCcccchhhHhHHHHHHh-hCCCCCCcccCCCccHHHH
Q 037488 499 ----ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETF-TRKKPTDEIFSGEMTLKHW 572 (628)
Q Consensus 499 ----~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~l-tg~~p~~~~~~~~~~~~~~ 572 (628)
+|||+++.... .....++..|+|||++.+ ..++.++|||||||++|||+ +|+.||....+.. ...+
T Consensus 162 ~~kl~d~g~~~~~~~------~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~--~~~~ 233 (274)
T cd05076 162 FIKLSDPGVSFTALS------REERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSE--KERF 233 (274)
T ss_pred eeeecCCcccccccc------ccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHH--HHHH
Confidence 13443332111 122357889999998876 56899999999999999995 6999986543211 1111
Q ss_pred HHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 573 VNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
... . ...+.....++.+++.+||+.+|++|||+.+|
T Consensus 234 ~~~------------~--------~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i 269 (274)
T cd05076 234 YEK------------K--------HRLPEPSCKELATLISQCLTYEPTQRPSFRTI 269 (274)
T ss_pred HHh------------c--------cCCCCCCChHHHHHHHHHcccChhhCcCHHHH
Confidence 110 0 00111123458899999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt |
| >KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-23 Score=205.64 Aligned_cols=173 Identities=18% Similarity=0.242 Sum_probs=135.6
Q ss_pred ccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----------
Q 037488 432 NNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---------- 498 (628)
Q Consensus 432 ~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---------- 498 (628)
.+.+|+|.||+||-|.. ++|+.||||++++.. .....++..|+.||.+++||.||.+-.-|+..+..
T Consensus 569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~GD 648 (888)
T KOG4236|consen 569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGD 648 (888)
T ss_pred HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcch
Confidence 47899999999999986 789999999997532 23346778899999999999999987766543321
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
||||+||.+.... -..+
T Consensus 649 MLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEks---FRrs 725 (888)
T KOG4236|consen 649 MLEMILSSEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKS---FRRS 725 (888)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchhh---hhhh
Confidence 6999999874432 2356
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
.+||+.|+|||++.++.|+..-|+||.|||+|.-++|..||.+..+ +-|.+....+-+.+.
T Consensus 726 VVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEd-------------------IndQIQNAaFMyPp~ 786 (888)
T KOG4236|consen 726 VVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDED-------------------INDQIQNAAFMYPPN 786 (888)
T ss_pred hcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccc-------------------hhHHhhccccccCCC
Confidence 7899999999999999999999999999999999999999975211 111111222223345
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
.|.+.+.+++|||...|+..-++|-|.+
T Consensus 787 PW~eis~~AidlIn~LLqVkm~kRysvd 814 (888)
T KOG4236|consen 787 PWSEISPEAIDLINNLLQVKMRKRYSVD 814 (888)
T ss_pred chhhcCHHHHHHHHHHHHHHHHHhcchH
Confidence 6677888899999999999999988764
|
|
| >cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-22 Score=200.01 Aligned_cols=183 Identities=23% Similarity=0.350 Sum_probs=130.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCc----EEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGM----EVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
..+|...+.||+|+||.||+|.. .+|. .+|+|.+.... ......+.+|+.++++++||||++++++|......
T Consensus 6 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 85 (279)
T cd05057 6 ETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLSSQVQL 85 (279)
T ss_pred HHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCceEE
Confidence 35678889999999999999986 3343 68999886543 33456788999999999999999999876531110
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+++........
T Consensus 86 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~ 165 (279)
T cd05057 86 ITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKE 165 (279)
T ss_pred EEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCcccccccCcccc
Confidence 399999865432221
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.......++..|+|||.+.+..++.++|||||||++||+++ |+.||...... .+...... .
T Consensus 166 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--~~~~~~~~---------------~- 227 (279)
T cd05057 166 YHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAV--EIPDLLEK---------------G- 227 (279)
T ss_pred eecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHH--HHHHHHhC---------------C-
Confidence 11122234678999999988889999999999999999999 99999753221 11111110 0
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++..+.+++.+||..||++||++.++
T Consensus 228 --~~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l 261 (279)
T cd05057 228 --ERLPQPPICTIDVYMVLVKCWMIDAESRPTFKEL 261 (279)
T ss_pred --CCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 0011222345668999999999999999998753
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea |
| >cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-22 Score=199.01 Aligned_cols=179 Identities=21% Similarity=0.320 Sum_probs=127.8
Q ss_pred CCCcccccccCCccEEEEEEec--CCcEEEEEEeecc----------chhHHHHHHHHHHHhhc-ccCCCcceeeeeccC
Q 037488 428 GFSENNLIDRGGIGYVYKRRIH--YGMEVAVKVFDLQ----------YREAFKNFDIECDMMKH-IRHRNLIKIISSCSN 494 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~~--~~~~vavK~~~~~----------~~~~~~~~~~E~~~l~~-l~h~niv~l~~~~~~ 494 (628)
+|+..+.||+|+||.||+|... .++.+|+|.+... .......+.+|+.++.+ ++||||+++++++.+
T Consensus 1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~ 80 (269)
T cd08528 1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE 80 (269)
T ss_pred CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence 4778899999999999999874 4788999988532 12234567789988875 799999999987654
Q ss_pred CCcc-----------------------------------------------------------------------ccccc
Q 037488 495 DDFK-----------------------------------------------------------------------ADFGM 503 (628)
Q Consensus 495 ~~~~-----------------------------------------------------------------------~DFGl 503 (628)
++.. +|||+
T Consensus 81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~~~~l~dfg~ 160 (269)
T cd08528 81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGL 160 (269)
T ss_pred CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCCCcEEEecccc
Confidence 3211 38888
Q ss_pred cccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccce
Q 037488 504 AKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMK 583 (628)
Q Consensus 504 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (628)
+....... ......|+..|+|||++.++.++.++|||||||++|||++|++||.... .............
T Consensus 161 ~~~~~~~~---~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~-----~~~~~~~~~~~~~-- 230 (269)
T cd08528 161 AKQKQPES---KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTN-----MLSLATKIVEAVY-- 230 (269)
T ss_pred eeeccccc---ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccC-----HHHHHHHHhhccC--
Confidence 77543322 2234568999999999999889999999999999999999999985421 1111111100000
Q ss_pred eecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 584 VVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. +.....++.++.+++.+||+.||++||++.||
T Consensus 231 ------~------~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~ 263 (269)
T cd08528 231 ------E------PLPEGMYSEDVTDVITSCLTPDAEARPDIIQV 263 (269)
T ss_pred ------C------cCCcccCCHHHHHHHHHHCCCCCccCCCHHHH
Confidence 0 00111235668999999999999999998764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. |
| >cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-22 Score=206.30 Aligned_cols=202 Identities=20% Similarity=0.199 Sum_probs=134.0
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCc--c
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDF--K 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~--~ 498 (628)
..++|...+.||+|+||.||+|.. .+|+.+|+|++... .......+.+|+.+++++ +||||++++++|...+. .
T Consensus 5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~ 84 (337)
T cd07852 5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDI 84 (337)
T ss_pred hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceE
Confidence 356788889999999999999987 46899999998542 233445677899999999 99999999998753221 0
Q ss_pred ----------------------------------------------------------------ccccccccccccCcc-
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQS- 513 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~- 513 (628)
+|||+++........
T Consensus 85 ~lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~ 164 (337)
T cd07852 85 YLVFEYMETDLHAVIRANILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENP 164 (337)
T ss_pred EEEecccccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchhccccccccc
Confidence 399998865433211
Q ss_pred --cccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcc---------
Q 037488 514 --LIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISV--------- 581 (628)
Q Consensus 514 --~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~--------- 581 (628)
.......||.+|+|||++.+ ..++.++|||||||++|||+||+.||....... .... .....+...
T Consensus 165 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 242 (337)
T cd07852 165 ENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLN-QLEK-IIEVIGPPSAEDIESIKS 242 (337)
T ss_pred cCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHH-HHHH-HHHHhCCCCHHHHHHHHh
Confidence 12233568999999998765 458899999999999999999999996532211 0111 000000000
Q ss_pred ---ceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 582 ---MKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 582 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+................++.++.+++.+||+.||++|||+.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~i 292 (337)
T cd07852 243 PFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEA 292 (337)
T ss_pred hhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHH
Confidence 00000000000000011112256779999999999999999998764
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul |
| >cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-22 Score=198.23 Aligned_cols=179 Identities=20% Similarity=0.250 Sum_probs=132.7
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
+|+..+.||.|+||.||+|+. .+++.||+|++.... ....+.+.+|++++++++||||+++++++.+++..
T Consensus 1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 80 (258)
T cd05578 1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD 80 (258)
T ss_pred CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence 478889999999999999987 469999999997532 23457789999999999999999988765443211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||++....... ...
T Consensus 81 ~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~---~~~ 157 (258)
T cd05578 81 LLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDT---LTT 157 (258)
T ss_pred CCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccccCCCc---ccc
Confidence 3888887653321 123
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccch
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHF 597 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (628)
...|+..|+|||++.+..++.++||||+||++|+|++|+.||...... ........ ... ...
T Consensus 158 ~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~-~~~---------------~~~ 219 (258)
T cd05578 158 STSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRT--IRDQIRAK-QET---------------ADV 219 (258)
T ss_pred ccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCcc--HHHHHHHH-hcc---------------ccc
Confidence 456899999999999888999999999999999999999999754321 11111111 000 011
Q ss_pred hchhhhHHHHHHHhhcccCCCcccCCCC--CC
Q 037488 598 VIKGQCVSFVFNLAMKCTVESPEERVNA--KE 627 (628)
Q Consensus 598 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~--~e 627 (628)
..+...+.++.+++.+||+.||++||++ +|
T Consensus 220 ~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~ 251 (258)
T cd05578 220 LYPATWSTEAIDAINKLLERDPQKRLGDNLKD 251 (258)
T ss_pred cCcccCcHHHHHHHHHHccCChhHcCCccHHH
Confidence 1223345779999999999999999998 55
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. |
| >cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-22 Score=205.11 Aligned_cols=184 Identities=23% Similarity=0.365 Sum_probs=129.3
Q ss_pred hhcCCCcccccccCCccEEEEEEec--------CCcEEEEEEeecc-chhHHHHHHHHHHHhhcc-cCCCcceeeeeccC
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIH--------YGMEVAVKVFDLQ-YREAFKNFDIECDMMKHI-RHRNLIKIISSCSN 494 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~--------~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 494 (628)
..++|...+.||+|+||.||+|+.. ....+|+|.++.. .......+.+|+++++++ +||||++++++|..
T Consensus 10 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~ 89 (314)
T cd05099 10 PRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQ 89 (314)
T ss_pred cHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEcc
Confidence 4467888899999999999998641 2457999998753 234456788999999999 69999999987643
Q ss_pred CCcc----------------------------------------------------------------------------
Q 037488 495 DDFK---------------------------------------------------------------------------- 498 (628)
Q Consensus 495 ~~~~---------------------------------------------------------------------------- 498 (628)
+...
T Consensus 90 ~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~ 169 (314)
T cd05099 90 EGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTE 169 (314)
T ss_pred CCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEEEcC
Confidence 2100
Q ss_pred ------ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHH
Q 037488 499 ------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKH 571 (628)
Q Consensus 499 ------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~ 571 (628)
+|||+++...............++..|||||++.++.++.++|||||||++|||++ |..||..... ..
T Consensus 170 ~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~-----~~ 244 (314)
T cd05099 170 DNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPV-----EE 244 (314)
T ss_pred CCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCH-----HH
Confidence 38888876533221111122235568999999998899999999999999999999 8899864321 11
Q ss_pred HHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 572 WVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....... . .....+..++.++.+++.+||+.||++|||+.|+
T Consensus 245 ~~~~~~~--------~-------~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l 286 (314)
T cd05099 245 LFKLLRE--------G-------HRMDKPSNCTHELYMLMRECWHAVPTQRPTFKQL 286 (314)
T ss_pred HHHHHHc--------C-------CCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence 1111000 0 0011223456679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-22 Score=198.38 Aligned_cols=174 Identities=25% Similarity=0.376 Sum_probs=127.7
Q ss_pred cCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-c-------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF-K------- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-~------- 498 (628)
.+|...+.||+|+||.||+|... |..||+|.++... ..+.+.+|+.++++++|+|++++++++...+. .
T Consensus 6 ~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~ 82 (256)
T cd05082 6 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM 82 (256)
T ss_pred HhCeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCCc--hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECC
Confidence 46788899999999999999765 7889999986432 34568899999999999999999986532110 0
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++...... .
T Consensus 83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~-----~ 157 (256)
T cd05082 83 AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-----D 157 (256)
T ss_pred CCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccceeccccC-----C
Confidence 3888887542221 2
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...++..|+|||++.+..++.++|||||||++|||++ |+.||.... .......... . ..
T Consensus 158 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~-----~~~~~~~~~~-------------~--~~ 217 (256)
T cd05082 158 TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP-----LKDVVPRVEK-------------G--YK 217 (256)
T ss_pred CCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCC-----HHHHHHHHhc-------------C--CC
Confidence 3346678999999998889999999999999999998 999986421 1111111000 0 00
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..++..+.+++.+||+.+|++|||+.++
T Consensus 218 ~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l 249 (256)
T cd05082 218 MDAPDGCPPVVYDVMKQCWHLDAATRPSFLQL 249 (256)
T ss_pred CCCCCCCCHHHHHHHHHHhcCChhhCcCHHHH
Confidence 11223456779999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re |
| >cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-22 Score=199.17 Aligned_cols=198 Identities=20% Similarity=0.180 Sum_probs=132.6
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
+|...+.||+|+||.||+|.. .+|+.||||++.... ......+.+|+.++++++||||+++++++..+...
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~ 80 (286)
T cd07832 1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEY 80 (286)
T ss_pred CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecc
Confidence 477889999999999999987 578999999987543 33356789999999999999999999876543211
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+++....... .....
T Consensus 81 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~-~~~~~ 159 (286)
T cd07832 81 MPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEP-RLYSH 159 (286)
T ss_pred cCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCC-Ccccc
Confidence 38888876543321 11234
Q ss_pred ccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc----cc---eee--ccc
Q 037488 519 TLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS----VM---KVV--DAH 588 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~----~~---~~~--~~~ 588 (628)
..|+.+|+|||++.+.. ++.++||||+||++|||+||++||...... .... ......... +. ... ...
T Consensus 160 ~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (286)
T cd07832 160 QVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDI-EQLA-IVFRTLGTPNEETWPGLTSLPDYNKI 237 (286)
T ss_pred ccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHH-HHHH-HHHHHcCCCChHHHhhccCcchhhcc
Confidence 57999999999987644 689999999999999999998888643211 1111 111111000 00 000 000
Q ss_pred ccC-Cccc-chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLS-QEDK-HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~-~~~~-~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
... .... ......+.+.++.+++.+||+.||++|||++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~ 279 (286)
T cd07832 238 TFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEA 279 (286)
T ss_pred cCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHH
Confidence 000 0000 001112345789999999999999999999764
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea |
| >KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-22 Score=219.31 Aligned_cols=181 Identities=26% Similarity=0.444 Sum_probs=133.4
Q ss_pred cCCCcccccccCCccEEEEEEec----C----CcEEEEEEeecc-chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCC
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIH----Y----GMEVAVKVFDLQ-YREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDD 496 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~----~----~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 496 (628)
++....+.+|+|.||.|++|... . ...||||.++.. .....+.+..|+++|+.+ +|||||.++|+|..+.
T Consensus 296 ~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~ 375 (609)
T KOG0200|consen 296 ENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDG 375 (609)
T ss_pred hhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCC
Confidence 33344568999999999998642 1 457999999753 335567899999999999 6999999999886511
Q ss_pred ---------------------c-----------------c----------------------------------------
Q 037488 497 ---------------------F-----------------K---------------------------------------- 498 (628)
Q Consensus 497 ---------------------~-----------------~---------------------------------------- 498 (628)
. .
T Consensus 376 ~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNVLi~~~~ 455 (609)
T KOG0200|consen 376 PLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARNVLITKNK 455 (609)
T ss_pred ceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhEEecCCC
Confidence 0 1
Q ss_pred ----ccccccccccccCccccccccc--ccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHH
Q 037488 499 ----ADFGMAKPLLKEDQSLIQTQTL--ATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKH 571 (628)
Q Consensus 499 ----~DFGla~~~~~~~~~~~~~~~~--gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~ 571 (628)
+|||+||.......+. ..... -...|||||.+....|+.|+|||||||+|||++| |..||.+..... .+..
T Consensus 456 ~~kIaDFGlar~~~~~~~y~-~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~-~l~~ 533 (609)
T KOG0200|consen 456 VIKIADFGLARDHYNKDYYR-TKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTE-ELLE 533 (609)
T ss_pred EEEEccccceeccCCCCceE-ecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHH-HHHH
Confidence 4999999654443322 12222 3456999999999999999999999999999999 899997632111 1111
Q ss_pred HHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 572 WVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
+. ....+...|..|+.+++++|..||+.+|++||++.|
T Consensus 534 ~l------------------~~G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~ 571 (609)
T KOG0200|consen 534 FL------------------KEGNRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSE 571 (609)
T ss_pred HH------------------hcCCCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHH
Confidence 11 122344566778999999999999999999999875
|
|
| >cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-22 Score=198.73 Aligned_cols=187 Identities=24% Similarity=0.379 Sum_probs=131.5
Q ss_pred cCCCcccccccCCccEEEEEEe-----cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCC--cc
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-----HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDD--FK 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~ 498 (628)
..|...+.||+|+||.||+++. .++..||+|.++... ......+.+|++++++++||||+++++++...+ ..
T Consensus 4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (284)
T cd05079 4 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 83 (284)
T ss_pred hhhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCce
Confidence 3467888999999999999874 357889999987543 334567899999999999999999998775431 00
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||+++......
T Consensus 84 ~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~ 163 (284)
T cd05079 84 KLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDK 163 (284)
T ss_pred EEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCccccccccCc
Confidence 3999988654332
Q ss_pred cc-cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccC----------CCccHHHHHHhhcCCc
Q 037488 512 QS-LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFS----------GEMTLKHWVNDLLPIS 580 (628)
Q Consensus 512 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~----------~~~~~~~~~~~~~~~~ 580 (628)
.. .......|+..|+|||++.+..++.++|||||||++|||+|++.|...... +......+....
T Consensus 164 ~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 239 (284)
T cd05079 164 EYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVL---- 239 (284)
T ss_pred cceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHH----
Confidence 21 111234577889999999888899999999999999999998876532111 000011111000
Q ss_pred cceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 581 VMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .......+..++.++.+++.+||+.||++|||+.++
T Consensus 240 -----~------~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i 276 (284)
T cd05079 240 -----E------EGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNL 276 (284)
T ss_pred -----H------cCccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHH
Confidence 0 001112233467789999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a |
| >cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-22 Score=198.48 Aligned_cols=179 Identities=20% Similarity=0.257 Sum_probs=130.0
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
+|...+.||+|+||.||+|.. .+|..||+|.+.... ....+.+.+|++++++++||||+++++++..+...
T Consensus 1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~ 80 (257)
T cd08225 1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY 80 (257)
T ss_pred CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence 477888999999999999987 568999999986532 23345678999999999999999998876543211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||.+....... ..
T Consensus 81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~--~~ 158 (257)
T cd08225 81 CDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSM--EL 158 (257)
T ss_pred CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhccCCc--cc
Confidence 3777776543221 11
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
.....|++.|+|||+..+..++.++|||||||++|||++|+.||.... ...+.........
T Consensus 159 ~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-----~~~~~~~~~~~~~-------------- 219 (257)
T cd08225 159 AYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNN-----LHQLVLKICQGYF-------------- 219 (257)
T ss_pred ccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCcc-----HHHHHHHHhcccC--------------
Confidence 123468999999999988889999999999999999999999986432 1222211111000
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+.++.+++.+||+.+|++|||+.||
T Consensus 220 -~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l 251 (257)
T cd08225 220 -APISPNFSRDLRSLISQLFKVSPRDRPSITSI 251 (257)
T ss_pred -CCCCCCCCHHHHHHHHHHhccChhhCcCHHHH
Confidence 00112235569999999999999999998764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. |
| >cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-22 Score=199.37 Aligned_cols=197 Identities=23% Similarity=0.351 Sum_probs=132.4
Q ss_pred cCCCcccccccCCccEEEEEEec-----CCcEEEEEEeeccchh-HHHHHHHHHHHhhcccCCCcceeeeeccCCC--cc
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIH-----YGMEVAVKVFDLQYRE-AFKNFDIECDMMKHIRHRNLIKIISSCSNDD--FK 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~ 498 (628)
+.|...+.||+|+||.||+|.+. +++.||||+++..... ..+.|.+|+++++.++||||+++++++.... ..
T Consensus 4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~ 83 (284)
T cd05038 4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSL 83 (284)
T ss_pred hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCce
Confidence 45677789999999999999852 4788999999755432 4677999999999999999999998875411 10
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||+++......
T Consensus 84 ~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~ 163 (284)
T cd05038 84 RLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDK 163 (284)
T ss_pred EEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccccccccccCC
Confidence 3899888654222
Q ss_pred cc-cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 512 QS-LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 512 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
.. .......++..|+|||...+..++.++|||||||++|||+||+.|+......... ++...........+...+.
T Consensus 164 ~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 240 (284)
T cd05038 164 DYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLR---MIGIAQGQMIVTRLLELLK 240 (284)
T ss_pred cceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhcc---ccccccccccHHHHHHHHH
Confidence 11 1111234567799999999889999999999999999999999997543221100 0000000000000000000
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+..++.++.+++.+||+.+|++||||.||
T Consensus 241 --~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei 276 (284)
T cd05038 241 --EGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADL 276 (284)
T ss_pred --cCCcCCCCccCCHHHHHHHHHHhccChhhCCCHHHH
Confidence 001112233456779999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut |
| >cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-22 Score=198.61 Aligned_cols=184 Identities=22% Similarity=0.259 Sum_probs=131.8
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCc----
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDF---- 497 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~---- 497 (628)
.++++|+..+.||+|+||.||+|.. .+++.+|+|++..... ....+.+|+.+++++ +||||+++++++.....
T Consensus 3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~ 81 (275)
T cd06608 3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGND 81 (275)
T ss_pred CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcc
Confidence 3568899999999999999999987 5688999999876543 335688999999999 79999999988743221
Q ss_pred --c----------------------------------------------------------------------ccccccc
Q 037488 498 --K----------------------------------------------------------------------ADFGMAK 505 (628)
Q Consensus 498 --~----------------------------------------------------------------------~DFGla~ 505 (628)
. +|||++.
T Consensus 82 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~ 161 (275)
T cd06608 82 DQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSA 161 (275)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCccce
Confidence 0 3888876
Q ss_pred cccccCcccccccccccccccCcccccc-----CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc
Q 037488 506 PLLKEDQSLIQTQTLATIGYMAPEYGRE-----GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS 580 (628)
Q Consensus 506 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~ 580 (628)
...... .......|+..|+|||++.. ..++.++||||+||++|||++|+.||....+.. ...... ..
T Consensus 162 ~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~-~~~~~~----~~- 233 (275)
T cd06608 162 QLDSTL--GRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMR-ALFKIP----RN- 233 (275)
T ss_pred ecccch--hhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchHH-HHHHhh----cc-
Confidence 543221 11234568999999998754 347889999999999999999999996432111 111100 00
Q ss_pred cceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 581 VMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+..++.++.+++.+||..||++|||+.|+
T Consensus 234 ------------~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~l 269 (275)
T cd06608 234 ------------PPPTLKSPENWSKKFNDFISECLIKNYEQRPFMEEL 269 (275)
T ss_pred ------------CCCCCCchhhcCHHHHHHHHHHhhcChhhCcCHHHH
Confidence 000011122345679999999999999999998764
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I |
| >cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-22 Score=197.13 Aligned_cols=181 Identities=24% Similarity=0.372 Sum_probs=131.2
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
.++|...+.||+|+||.||+|....+..+|+|.+.... .....+.+|++++++++|+||+++++++......
T Consensus 5 ~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~v~e~~~ 83 (260)
T cd05073 5 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMA 83 (260)
T ss_pred ccceeEEeEecCccceEEEEEEecCCccEEEEecCCCh-hHHHHHHHHHHHHHhcCCCCcceEEEEEcCCCeEEEEEeCC
Confidence 46788889999999999999987767789999886432 2346788999999999999999998876542110
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||.++...... ......
T Consensus 84 ~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~-~~~~~~ 162 (260)
T cd05073 84 KGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE-YTAREG 162 (260)
T ss_pred CCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcceeeccCCC-cccccC
Confidence 3899887543221 111123
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccch
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHF 597 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (628)
..++..|+|||++.++.++.++|||||||++||++| |+.||..... .....+..... ..
T Consensus 163 ~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~--~~~~~~~~~~~------------------~~ 222 (260)
T cd05073 163 AKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN--PEVIRALERGY------------------RM 222 (260)
T ss_pred CcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCH--HHHHHHHhCCC------------------CC
Confidence 346778999999998889999999999999999999 9999865321 11111111000 00
Q ss_pred hchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 598 VIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 598 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+...+.++.+++.+||+.+|++||++.++
T Consensus 223 ~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l 253 (260)
T cd05073 223 PRPENCPEELYNIMMRCWKNRPEERPTFEYI 253 (260)
T ss_pred CCcccCCHHHHHHHHHHcccCcccCcCHHHH
Confidence 1122345679999999999999999998653
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa |
| >cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-22 Score=201.82 Aligned_cols=135 Identities=21% Similarity=0.274 Sum_probs=105.2
Q ss_pred CCCcccccccCCccEEEEEEe-c--CCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCC--Ccc-
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-H--YGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSND--DFK- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~--~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~- 498 (628)
+|...+.||+|+||.||+|.. . +++.||+|.+.... ....+.+.+|+.++++++||||+++++++... +..
T Consensus 1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 80 (316)
T cd07842 1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY 80 (316)
T ss_pred CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence 477788999999999999987 3 58999999997632 33346678899999999999999999987654 110
Q ss_pred -------------------------------------------------------------------------ccccccc
Q 037488 499 -------------------------------------------------------------------------ADFGMAK 505 (628)
Q Consensus 499 -------------------------------------------------------------------------~DFGla~ 505 (628)
+|||+++
T Consensus 81 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~ 160 (316)
T cd07842 81 LLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLAR 160 (316)
T ss_pred EEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCcccc
Confidence 3888887
Q ss_pred cccccCc-ccccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcc
Q 037488 506 PLLKEDQ-SLIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEI 562 (628)
Q Consensus 506 ~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~ 562 (628)
....... ........||..|+|||++.+. .++.++|||||||++|||++|++||...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~ 219 (316)
T cd07842 161 LFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGR 219 (316)
T ss_pred ccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCC
Confidence 5433221 1122344689999999988764 5899999999999999999999999754
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the |
| >cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-22 Score=205.91 Aligned_cols=199 Identities=22% Similarity=0.221 Sum_probs=133.4
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
.++|...+.||+|+||.||+|+. .+|+.||||+++.. .......+.+|+.+++.++||||+++++++.....
T Consensus 4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 83 (337)
T cd07858 4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND 83 (337)
T ss_pred ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence 46789999999999999999986 67999999998643 23334567889999999999999999876542210
Q ss_pred -----------------------------------------------------------------cccccccccccccCc
Q 037488 498 -----------------------------------------------------------------KADFGMAKPLLKEDQ 512 (628)
Q Consensus 498 -----------------------------------------------------------------~~DFGla~~~~~~~~ 512 (628)
.+|||+++......
T Consensus 84 ~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~- 162 (337)
T cd07858 84 VYIVYELMDTDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKG- 162 (337)
T ss_pred EEEEEeCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCccccccCCCc-
Confidence 03999998653322
Q ss_pred ccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcC----Cccceeecc
Q 037488 513 SLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLP----ISVMKVVDA 587 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 587 (628)
.......||..|+|||++.+ ..++.++|||||||++|||++|++||...... ...... ..... .....+.+.
T Consensus 163 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~ 239 (337)
T cd07858 163 -DFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYV-HQLKLI-TELLGSPSEEDLGFIRNE 239 (337)
T ss_pred -ccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChH-HHHHHH-HHHhCCCChHHhhhcCch
Confidence 12234568999999998765 46899999999999999999999999653210 001000 00000 000000000
Q ss_pred cc-------c-CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HL-------L-SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~-------~-~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. . ............++.++.+++.+||+.||++|||++|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~el 288 (337)
T cd07858 240 KARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEA 288 (337)
T ss_pred hhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHH
Confidence 00 0 00000011123467789999999999999999998764
|
Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati |
| >cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-22 Score=200.02 Aligned_cols=201 Identities=20% Similarity=0.179 Sum_probs=130.2
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch-hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR-EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.++|+..+.||+|+||.||+|+. .+++.||||.+..... .....+.+|++++++++||||+++++++..++..
T Consensus 4 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 83 (291)
T cd07844 4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFE 83 (291)
T ss_pred ccceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEe
Confidence 36788899999999999999987 4689999999865432 2234567899999999999999999987653311
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++....... ...
T Consensus 84 ~~~~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~ 161 (291)
T cd07844 84 YLDTDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSK--TYS 161 (291)
T ss_pred cCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECccccccccCCCCc--ccc
Confidence 38998875422111 112
Q ss_pred cccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhc---CCccceeecc-----c
Q 037488 518 QTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL---PISVMKVVDA-----H 588 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~ 588 (628)
...++..|+|||++.+ ..++.++||||+||++|||++|+.||.........+........ +..+...... .
T Consensus 162 ~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (291)
T cd07844 162 NEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPY 241 (291)
T ss_pred ccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhccccccc
Confidence 3457899999999876 45899999999999999999999999653311111111110000 0000000000 0
Q ss_pred ccCCcccch--hchhhh--HHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLSQEDKHF--VIKGQC--VSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~~~~~~~--~~~~~~--~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......... ...... ..++.+++.+|++.||++|||+.|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~ 285 (291)
T cd07844 242 SFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEA 285 (291)
T ss_pred cccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHH
Confidence 000000000 000011 2568899999999999999998764
|
Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the |
| >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-23 Score=201.42 Aligned_cols=168 Identities=23% Similarity=0.322 Sum_probs=116.6
Q ss_pred cccccCCccEEEEEEec-C-------CcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 433 NLIDRGGIGYVYKRRIH-Y-------GMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~~-~-------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
+.||+|+||.||+|... . ...||+|.+........+.+.+|+.+++.++|||||++++++..++..
T Consensus 1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~ 80 (258)
T cd05078 1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEY 80 (258)
T ss_pred CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEec
Confidence 36899999999999752 2 234888888665555567788999999999999999999887542211
Q ss_pred ---------------------------------------------------------------------ccccccccccc
Q 037488 499 ---------------------------------------------------------------------ADFGMAKPLLK 509 (628)
Q Consensus 499 ---------------------------------------------------------------------~DFGla~~~~~ 509 (628)
+|||++.....
T Consensus 81 ~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~ 160 (258)
T cd05078 81 VKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLP 160 (258)
T ss_pred CCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEecccccccccCC
Confidence 24444432211
Q ss_pred cCcccccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCC-CCCCcccCCCccHHHHHHhhcCCccceeecc
Q 037488 510 EDQSLIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRK-KPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587 (628)
Q Consensus 510 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (628)
.....|+..|+|||++.+. .++.++|||||||++|||++|. .|+....+.. ...... .
T Consensus 161 ------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~--~~~~~~------------~ 220 (258)
T cd05078 161 ------KEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQK--KLQFYE------------D 220 (258)
T ss_pred ------chhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHH--HHHHHH------------c
Confidence 1234688999999999874 5899999999999999999994 5654321110 000000 0
Q ss_pred cccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+.....++.+++.+||+.||++|||++++
T Consensus 221 --------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i 253 (258)
T cd05078 221 --------RHQLPAPKWTELANLINQCMDYEPDFRPSFRAI 253 (258)
T ss_pred --------cccCCCCCcHHHHHHHHHHhccChhhCCCHHHH
Confidence 011122234568999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity |
| >cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-22 Score=204.40 Aligned_cols=204 Identities=21% Similarity=0.221 Sum_probs=136.2
Q ss_pred hHHHHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCC
Q 037488 419 YLELFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSND 495 (628)
Q Consensus 419 ~~~l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 495 (628)
...+...+++|...+.||+|+||.||+|.. .+|+.||+|+++... ....+.+.+|+.++++++||||+++++++...
T Consensus 9 ~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~ 88 (345)
T cd07877 9 NKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPA 88 (345)
T ss_pred HHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeec
Confidence 345666789999999999999999999986 679999999997532 23346678999999999999999998876421
Q ss_pred Cc--------------------------c--------------------------------------------ccccccc
Q 037488 496 DF--------------------------K--------------------------------------------ADFGMAK 505 (628)
Q Consensus 496 ~~--------------------------~--------------------------------------------~DFGla~ 505 (628)
.. . +|||+++
T Consensus 89 ~~~~~~~~~~lv~~~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~dfg~~~ 168 (345)
T cd07877 89 RSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR 168 (345)
T ss_pred ccccccccEEEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEecccccc
Confidence 10 0 3888887
Q ss_pred cccccCcccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhc--CCcc-
Q 037488 506 PLLKEDQSLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL--PISV- 581 (628)
Q Consensus 506 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~--~~~~- 581 (628)
..... .....||..|+|||++.+ ..++.++|||||||++|||++|+.||...... ........... +...
T Consensus 169 ~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~ 242 (345)
T cd07877 169 HTDDE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHI-DQLKLILRLVGTPGAELL 242 (345)
T ss_pred ccccc-----ccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCCHHHH
Confidence 54221 134568999999998876 56899999999999999999999999643211 11111111100 0000
Q ss_pred ceeecc---c----ccCCcccch-hchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 582 MKVVDA---H----LLSQEDKHF-VIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 582 ~~~~~~---~----~~~~~~~~~-~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+.+. . +.......+ ......+.++.+++.+|++.||++|||+.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~ 297 (345)
T cd07877 243 KKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQA 297 (345)
T ss_pred hhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHH
Confidence 000000 0 000000000 0011245678999999999999999998764
|
Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14 |
| >cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-22 Score=200.46 Aligned_cols=202 Identities=21% Similarity=0.242 Sum_probs=130.7
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF---- 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 497 (628)
..++|...+.||+|+||.||+|.. .+++.||||++.... ......+.+|++++++++||||++++++|.....
T Consensus 10 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 89 (310)
T cd07865 10 EVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNR 89 (310)
T ss_pred hhhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccC
Confidence 345789999999999999999987 579999999986432 2223456789999999999999999987643210
Q ss_pred ----------------------------------------------------------------------cccccccccc
Q 037488 498 ----------------------------------------------------------------------KADFGMAKPL 507 (628)
Q Consensus 498 ----------------------------------------------------------------------~~DFGla~~~ 507 (628)
.+|||++...
T Consensus 90 ~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~ 169 (310)
T cd07865 90 YKGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARAF 169 (310)
T ss_pred CCceEEEEEcCCCcCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEECcCCCcccc
Confidence 0389988765
Q ss_pred cccCcc--cccccccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhh---cCCcc
Q 037488 508 LKEDQS--LIQTQTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDL---LPISV 581 (628)
Q Consensus 508 ~~~~~~--~~~~~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~---~~~~~ 581 (628)
...... .......++..|+|||++.+.. ++.++|||||||++|||++|++||....+. ......... .+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 247 (310)
T cd07865 170 SLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQ--HQLTLISQLCGSITPEV 247 (310)
T ss_pred cCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHHhCCCChhh
Confidence 332211 1112346889999999887654 789999999999999999999998653221 111111111 11100
Q ss_pred c-ee-----ecccccCCccc---ch-hchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 582 M-KV-----VDAHLLSQEDK---HF-VIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 582 ~-~~-----~~~~~~~~~~~---~~-~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .. .+......... .. ..+......+.+++.+||..||++|||++|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~ 304 (310)
T cd07865 248 WPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTA 304 (310)
T ss_pred cccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHH
Confidence 0 00 00000000000 00 0011124567899999999999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl |
| >cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-22 Score=196.84 Aligned_cols=176 Identities=27% Similarity=0.485 Sum_probs=129.4
Q ss_pred cccccCCccEEEEEEec-C---CcEEEEEEeeccchh-HHHHHHHHHHHhhcccCCCcceeeeeccCCC-----------
Q 037488 433 NLIDRGGIGYVYKRRIH-Y---GMEVAVKVFDLQYRE-AFKNFDIECDMMKHIRHRNLIKIISSCSNDD----------- 496 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~~-~---~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----------- 496 (628)
+.||+|+||.||+|... . +..||+|.+...... ..+.+.+|++.++.++|+||+++++++..+.
T Consensus 1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~ 80 (262)
T cd00192 1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG 80 (262)
T ss_pred CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence 46899999999999874 3 788999999765433 3677899999999999999999988764311
Q ss_pred ---------c---------c----------------------------------------------ccccccccccccCc
Q 037488 497 ---------F---------K----------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 497 ---------~---------~----------------------------------------------~DFGla~~~~~~~~ 512 (628)
. . +|||.++.......
T Consensus 81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~ 160 (262)
T cd00192 81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDY 160 (262)
T ss_pred CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEcccccccccccccc
Confidence 0 0 38998886644322
Q ss_pred ccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 513 SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
........++..|+|||.+.+..++.++||||+||++|||++ |+.||..... ........ .
T Consensus 161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~~~~~~~--------~----- 222 (262)
T cd00192 161 YRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSN-----EEVLEYLR--------K----- 222 (262)
T ss_pred cccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCH-----HHHHHHHH--------c-----
Confidence 222334568899999999998899999999999999999999 6999976421 11111100 0
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+..++.++.+++.+||+.||++|||+.|+
T Consensus 223 --~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l 257 (262)
T cd00192 223 --GYRLPKPEYCPDELYELMLSCWQLDPEDRPTFSEL 257 (262)
T ss_pred --CCCCCCCccCChHHHHHHHHHccCCcccCcCHHHH
Confidence 01112233456779999999999999999998764
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan |
| >cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-22 Score=196.87 Aligned_cols=195 Identities=18% Similarity=0.196 Sum_probs=127.8
Q ss_pred CCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhccc-CCCcceeeeeccCC--Ccc-----
Q 037488 429 FSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIR-HRNLIKIISSCSND--DFK----- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~--~~~----- 498 (628)
|...+.||+|+||.||+|.. .+++.||+|+++... ........+|+.+++++. ||||+++++++.++ +..
T Consensus 1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e 80 (282)
T cd07831 1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE 80 (282)
T ss_pred CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence 56678899999999999986 578999999986532 122233457999999985 99999999987754 211
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+++....... ...
T Consensus 81 ~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~~~~kl~dfg~~~~~~~~~~---~~~ 157 (282)
T cd07831 81 LMDMNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKDDILKLADFGSCRGIYSKPP---YTE 157 (282)
T ss_pred cCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcCCCeEEEecccccccccCCC---cCC
Confidence 28888875533221 133
Q ss_pred ccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccce---------eeccc
Q 037488 519 TLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMK---------VVDAH 588 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 588 (628)
..++..|+|||++.+ +.++.++||||+||++|||++|++||....+. ................ ..+..
T Consensus 158 ~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (282)
T cd07831 158 YISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNEL--DQIAKIHDVLGTPDAEVLKKFRKSRHMNYN 235 (282)
T ss_pred CCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHH--HHHHHHHHHcCCCCHHHHHhhccccccccc
Confidence 468999999997654 55789999999999999999999999653221 1111111111110000 00000
Q ss_pred ccC-CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLS-QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~-~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
... ....-.......+.++.+++.+||+.||++|||+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~ 276 (282)
T cd07831 236 FPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQA 276 (282)
T ss_pred CcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHH
Confidence 000 0000001112457789999999999999999998764
|
Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. |
| >KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-23 Score=192.03 Aligned_cols=136 Identities=25% Similarity=0.287 Sum_probs=105.7
Q ss_pred hcCCCcccccccCCccEEEEEEec---C--CcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH---Y--GMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~---~--~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
...|+....||+|+||.||+|... + .+.+|+|+++... ......++||+.+++.++|||||.|..++...+..
T Consensus 23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~ 102 (438)
T KOG0666|consen 23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKK 102 (438)
T ss_pred HHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCce
Confidence 456888899999999999999542 2 2379999997542 22345689999999999999999987766442110
Q ss_pred ---------------------------------------------------------------------------ccccc
Q 037488 499 ---------------------------------------------------------------------------ADFGM 503 (628)
Q Consensus 499 ---------------------------------------------------------------------------~DFGl 503 (628)
+|||+
T Consensus 103 v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDlGl 182 (438)
T KOG0666|consen 103 VWLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADLGL 182 (438)
T ss_pred EEEEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeecccH
Confidence 49999
Q ss_pred cccccccCccc-ccccccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCc
Q 037488 504 AKPLLKEDQSL-IQTQTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDE 561 (628)
Q Consensus 504 a~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~ 561 (628)
||.+...-... .....+-|.||+|||.+.|.+ |+.++||||.|||..||+|-++-|..
T Consensus 183 aR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g 242 (438)
T KOG0666|consen 183 ARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKG 242 (438)
T ss_pred HHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccc
Confidence 99875443322 234457999999999998865 99999999999999999999887754
|
|
| >PLN00009 cyclin-dependent kinase A; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-22 Score=200.34 Aligned_cols=198 Identities=20% Similarity=0.214 Sum_probs=131.1
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
++|+..+.||+|++|.||+|.. .+|+.||+|++.... ....+.+.+|++++++++||||+++++++..+...
T Consensus 2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 81 (294)
T PLN00009 2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE 81 (294)
T ss_pred CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence 4688889999999999999987 578999999986532 22345688999999999999999999987543211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++...... ..
T Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~--~~ 159 (294)
T PLN00009 82 YLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPV--RT 159 (294)
T ss_pred cccccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEcccccccccCCCc--cc
Confidence 3888876542221 11
Q ss_pred cccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcccee-------ecc
Q 037488 516 QTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKV-------VDA 587 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 587 (628)
.....|++.|+|||++.+. .++.++||||+||++|||+||++||......+ ....... ......... .+.
T Consensus 160 ~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~ 237 (294)
T PLN00009 160 FTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEID-ELFKIFR-ILGTPNEETWPGVTSLPDY 237 (294)
T ss_pred cccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHH-HhCCCChhhccccccchhh
Confidence 1334688999999988764 57999999999999999999999996532211 1111110 000000000 000
Q ss_pred cc-cC--CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HL-LS--QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~-~~--~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. .. ............+.++.+++.+|++.+|++||++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~ 281 (294)
T PLN00009 238 KSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAA 281 (294)
T ss_pred hhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHH
Confidence 00 00 0000000112345668999999999999999998763
|
|
| >cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7 | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-22 Score=198.62 Aligned_cols=183 Identities=22% Similarity=0.257 Sum_probs=128.0
Q ss_pred hcCCCcccccccCCccEEEEEEec-CCcEEEEEEeeccc-hhHHHHHHHHHHHhhccc-CCCcceeeeeccCCCcc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH-YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIR-HRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~---- 498 (628)
-++|...+.||+|+||.||+|... +++.||||.++... ......+.+|+.++.+.. ||||++++++|..+...
T Consensus 14 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~ 93 (296)
T cd06618 14 LNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICM 93 (296)
T ss_pred cchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEe
Confidence 466788899999999999999984 59999999997543 233455677887777775 99999999987543211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++.......
T Consensus 94 e~~~~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~--- 170 (296)
T cd06618 94 ELMSTCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKA--- 170 (296)
T ss_pred eccCcCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECccccchhccCCCc---
Confidence 38888775432211
Q ss_pred cccccccccccCccccccCc----cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 516 QTQTLATIGYMAPEYGREGR----VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~----~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
.....|+..|+|||++.+.. ++.++|||||||++|||++|+.||.........+..+. .... +
T Consensus 171 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~----~~~~-----~---- 237 (296)
T cd06618 171 KTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVLTKIL----QEEP-----P---- 237 (296)
T ss_pred ccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhHHHHHHHHh----cCCC-----C----
Confidence 12345888999999987654 88999999999999999999999964221111111111 0000 0
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......++.++.+++.+||..||++||++.++
T Consensus 238 ----~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~i 270 (296)
T cd06618 238 ----SLPPNEGFSPDFCSFVDLCLTKDHRKRPKYREL 270 (296)
T ss_pred ----CCCCCCCCCHHHHHHHHHHccCChhhCCCHHHH
Confidence 000111245669999999999999999998764
|
Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it |
| >cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-22 Score=205.09 Aligned_cols=201 Identities=16% Similarity=0.192 Sum_probs=132.2
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCC--------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD-------- 496 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-------- 496 (628)
.++|...+.||+|+||.||+|.. .+|+.||+|++........+.+.+|++++++++||||+++++++....
T Consensus 4 ~~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (342)
T cd07854 4 GSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVG 83 (342)
T ss_pred CcceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccc
Confidence 36788999999999999999987 679999999997765556677889999999999999999876433210
Q ss_pred ------------------c-----------------------------------------------------cccccccc
Q 037488 497 ------------------F-----------------------------------------------------KADFGMAK 505 (628)
Q Consensus 497 ------------------~-----------------------------------------------------~~DFGla~ 505 (628)
. .+|||+++
T Consensus 84 ~~~~~~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~kl~dfg~~~ 163 (342)
T cd07854 84 SLTELNSVYIVQEYMETDLANVLEQGPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLAR 163 (342)
T ss_pred cccccceEEEEeecccccHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEEECCcccce
Confidence 0 03888887
Q ss_pred cccccCcc-cccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccc-
Q 037488 506 PLLKEDQS-LIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVM- 582 (628)
Q Consensus 506 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~- 582 (628)
........ .......|+..|+|||++.+ ..++.++||||+||++|||++|+.||....+... ...... ..+....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~-~~~~~~-~~~~~~~~ 241 (342)
T cd07854 164 IVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQ-MQLILE-SVPVVREE 241 (342)
T ss_pred ecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHH-hcCCCChH
Confidence 54321110 11123468999999998754 4588999999999999999999999965322111 111100 0000000
Q ss_pred ------eeeccccc-CCcc---cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 583 ------KVVDAHLL-SQED---KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 583 ------~~~~~~~~-~~~~---~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
........ .... .........+.++.+++.+||+.||++|||+.|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~el 297 (342)
T cd07854 242 DRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEA 297 (342)
T ss_pred HhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHH
Confidence 00000000 0000 0000112345678999999999999999998764
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi |
| >cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-22 Score=202.97 Aligned_cols=134 Identities=23% Similarity=0.348 Sum_probs=105.7
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|...+.||+|+||.||+++. .+++.||||++.... ....+.+.+|+.++..++||||+++++++..++..
T Consensus 1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ 80 (331)
T cd05597 1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM 80 (331)
T ss_pred CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence 4688899999999999999987 568999999997532 22345688999999999999999998876543311
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+....... ..
T Consensus 81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~-~~ 159 (331)
T cd05597 81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGT-VQ 159 (331)
T ss_pred ecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCC-cc
Confidence 39999876543221 11
Q ss_pred cccccccccccCcccccc-----CccCcccchhhHhHHHHHHhhCCCCCCc
Q 037488 516 QTQTLATIGYMAPEYGRE-----GRVSTNGDVYSFGIMLIETFTRKKPTDE 561 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~-----~~~~~~~DVwS~Gvvl~e~ltg~~p~~~ 561 (628)
....+||+.|||||++.+ +.++.++||||+||++|||++|+.||..
T Consensus 160 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~ 210 (331)
T cd05597 160 SNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYA 210 (331)
T ss_pred ccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCC
Confidence 223469999999999863 4578999999999999999999999965
|
Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, |
| >PHA03210 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-22 Score=214.56 Aligned_cols=203 Identities=17% Similarity=0.175 Sum_probs=125.7
Q ss_pred hhcCCCcccccccCCccEEEEEEec--CCcEEEEEEee--------------c---cchhHHHHHHHHHHHhhcccCCCc
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIH--YGMEVAVKVFD--------------L---QYREAFKNFDIECDMMKHIRHRNL 485 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~--~~~~vavK~~~--------------~---~~~~~~~~~~~E~~~l~~l~h~ni 485 (628)
..++|...+.||+|+||.||+|... .+..+++|.+. . ........+.+|++++++++||||
T Consensus 146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI 225 (501)
T PHA03210 146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI 225 (501)
T ss_pred hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence 3578999999999999999998652 23333333110 0 112234567899999999999999
Q ss_pred ceeeeeccCCCcc-------------------------------------------------------------------
Q 037488 486 IKIISSCSNDDFK------------------------------------------------------------------- 498 (628)
Q Consensus 486 v~l~~~~~~~~~~------------------------------------------------------------------- 498 (628)
|++++++..++..
T Consensus 226 v~l~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~~~~~ 305 (501)
T PHA03210 226 LKIEEILRSEANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGK 305 (501)
T ss_pred CcEeEEEEECCeeEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCC
Confidence 9998876432210
Q ss_pred ---ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCC-CCCcccCCC-ccHHHHH
Q 037488 499 ---ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKK-PTDEIFSGE-MTLKHWV 573 (628)
Q Consensus 499 ---~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~-p~~~~~~~~-~~~~~~~ 573 (628)
+|||+|+.+..... ....+.+||..|+|||++.+..|+.++|||||||++|||++|+. |+....... ..+....
T Consensus 306 vkL~DFGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~ 384 (501)
T PHA03210 306 IVLGDFGTAMPFEKERE-AFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKII 384 (501)
T ss_pred EEEEeCCCceecCcccc-cccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHH
Confidence 49999987643321 12234679999999999999999999999999999999999875 443321111 1111111
Q ss_pred Hhh------cCCcccee---ecccccCCcc---cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 574 NDL------LPISVMKV---VDAHLLSQED---KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 574 ~~~------~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
... ++....+. ++........ .........+..+.+++.+||+.||++|||+.|+
T Consensus 385 ~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~el 451 (501)
T PHA03210 385 DSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAEL 451 (501)
T ss_pred HhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHH
Confidence 110 01000000 0000000000 0000111234568889999999999999998764
|
|
| >cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-22 Score=199.02 Aligned_cols=172 Identities=19% Similarity=0.201 Sum_probs=128.9
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|...+.||+|+||.||++.. .+++.||+|++.... ......+.+|++++++++||||+++++++.++...
T Consensus 1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 80 (290)
T cd05580 1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM 80 (290)
T ss_pred CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence 3688889999999999999987 568999999986532 23456788999999999999999999876543311
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++..... .
T Consensus 81 e~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~-----~ 155 (290)
T cd05580 81 EYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR-----T 155 (290)
T ss_pred ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCccccCCC-----C
Confidence 389988765332 2
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
....|++.|+|||.+.+..++.++||||+||++|||++|+.||..... ......... . .
T Consensus 156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~------------~----~ 214 (290)
T cd05580 156 YTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNP-----IQIYEKILE------------G----K 214 (290)
T ss_pred CCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHhc------------C----C
Confidence 345699999999999888899999999999999999999999865321 111110000 0 0
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
...+...+..+++++.+||+.||++||+
T Consensus 215 ~~~~~~~~~~l~~li~~~l~~~p~~R~~ 242 (290)
T cd05580 215 VRFPSFFSPDAKDLIRNLLQVDLTKRLG 242 (290)
T ss_pred ccCCccCCHHHHHHHHHHccCCHHHccC
Confidence 1112233556899999999999999993
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi |
| >KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-22 Score=193.23 Aligned_cols=188 Identities=21% Similarity=0.376 Sum_probs=128.8
Q ss_pred hhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhc--ccCCCcceeeeeccC--------
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKH--IRHRNLIKIISSCSN-------- 494 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~-------- 494 (628)
..++....+.||+|.||.||+|+++ |..||||+|...++ +.+.||.+|... +||+||+.+++.-..
T Consensus 209 iarqI~L~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~srdE---~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQL 284 (513)
T KOG2052|consen 209 IARQIVLQEIIGKGRFGEVWRGRWR-GEDVAVKIFSSRDE---RSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQL 284 (513)
T ss_pred hhheeEEEEEecCccccceeecccc-CCceEEEEecccch---hhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEE
Confidence 3455677789999999999999998 88999999965444 446778888775 499999998764321
Q ss_pred ---------CCcc------------------------------------------------------------ccccccc
Q 037488 495 ---------DDFK------------------------------------------------------------ADFGMAK 505 (628)
Q Consensus 495 ---------~~~~------------------------------------------------------------~DFGla~ 505 (628)
+... +|+|+|-
T Consensus 285 wLvTdYHe~GSL~DyL~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv 364 (513)
T KOG2052|consen 285 WLVTDYHEHGSLYDYLNRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 364 (513)
T ss_pred EEeeecccCCcHHHHHhhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeE
Confidence 1100 4999997
Q ss_pred cccccCc--ccccccccccccccCccccccCc----cC--cccchhhHhHHHHHHhhC----------CCCCCcccCCCc
Q 037488 506 PLLKEDQ--SLIQTQTLATIGYMAPEYGREGR----VS--TNGDVYSFGIMLIETFTR----------KKPTDEIFSGEM 567 (628)
Q Consensus 506 ~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~----~~--~~~DVwS~Gvvl~e~ltg----------~~p~~~~~~~~~ 567 (628)
....... .......+||-+|||||++...- +. ..+||||||.|+||++.+ +.||.+..+.+.
T Consensus 365 ~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DP 444 (513)
T KOG2052|consen 365 RHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDP 444 (513)
T ss_pred EecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCC
Confidence 6533311 12335678999999999987531 22 368999999999999864 358877666665
Q ss_pred cHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 568 TLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
.+.++.+...-+.....++... ...++...+.++|+.||..+|..|-|+
T Consensus 445 s~eeMrkVVCv~~~RP~ipnrW---------~s~~~l~~m~klMkeCW~~Np~aRltA 493 (513)
T KOG2052|consen 445 SFEEMRKVVCVQKLRPNIPNRW---------KSDPALRVMAKLMKECWYANPAARLTA 493 (513)
T ss_pred CHHHHhcceeecccCCCCCccc---------ccCHHHHHHHHHHHHhhcCCchhhhHH
Confidence 5554432221111111111111 112456778999999999999999875
|
|
| >cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-22 Score=203.87 Aligned_cols=182 Identities=25% Similarity=0.384 Sum_probs=128.3
Q ss_pred cCCCcccccccCCccEEEEEEec--------CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCC
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIH--------YGMEVAVKVFDLQY-REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDD 496 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 496 (628)
.+|...+.||+|+||.||+|+.. .+..||+|.++... ....+.+.+|+++++++ +||||++++++|..+.
T Consensus 12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 91 (334)
T cd05100 12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG 91 (334)
T ss_pred hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCC
Confidence 45788899999999999999742 12469999887432 34467789999999999 8999999988764321
Q ss_pred cc------------------------------------------------------------------------------
Q 037488 497 FK------------------------------------------------------------------------------ 498 (628)
Q Consensus 497 ~~------------------------------------------------------------------------------ 498 (628)
..
T Consensus 92 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nill~~~~ 171 (334)
T cd05100 92 PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDN 171 (334)
T ss_pred ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCC
Confidence 00
Q ss_pred ----ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHH
Q 037488 499 ----ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWV 573 (628)
Q Consensus 499 ----~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~ 573 (628)
+|||+++...............++..|||||++.+..++.++|||||||++|||++ |..||.+.. ...+.
T Consensus 172 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~-----~~~~~ 246 (334)
T cd05100 172 VMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP-----VEELF 246 (334)
T ss_pred cEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCC-----HHHHH
Confidence 38888875432221111122345678999999999999999999999999999998 888986532 11111
Q ss_pred HhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 574 NDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..... . .....+..++.++.+++.+||+.+|++|||+.|+
T Consensus 247 ~~~~~--------~-------~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~el 286 (334)
T cd05100 247 KLLKE--------G-------HRMDKPANCTHELYMIMRECWHAVPSQRPTFKQL 286 (334)
T ss_pred HHHHc--------C-------CCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHH
Confidence 11100 0 0111223456679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-22 Score=200.78 Aligned_cols=177 Identities=25% Similarity=0.337 Sum_probs=127.4
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
..|+..+.||+|+||.||+|+. .+++.+|+|.+... .....+.+.+|+++++.++|||++++++++..+...
T Consensus 15 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 94 (308)
T cd06634 15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 94 (308)
T ss_pred HHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEE
Confidence 3466778899999999999987 56889999998642 233456788999999999999999999876543211
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||++......
T Consensus 95 e~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~------ 168 (308)
T cd06634 95 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA------ 168 (308)
T ss_pred EccCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCcccceeecCc------
Confidence 388877654321
Q ss_pred ccccccccccCccccc---cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 517 TQTLATIGYMAPEYGR---EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~---~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
....|+..|+|||++. .+.++.++|||||||++|||++|+.||....... ....+.....
T Consensus 169 ~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~-~~~~~~~~~~---------------- 231 (308)
T cd06634 169 NXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYHIAQNES---------------- 231 (308)
T ss_pred ccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHHH-HHHHHhhcCC----------------
Confidence 2346899999999975 3568899999999999999999999986432111 1111110000
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......++..+.+++.+||+.+|++||++.++
T Consensus 232 --~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l 264 (308)
T cd06634 232 --PALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVL 264 (308)
T ss_pred --CCcCcccccHHHHHHHHHHhhCCcccCCCHHHH
Confidence 000112345668999999999999999998764
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin |
| >cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-21 Score=192.91 Aligned_cols=179 Identities=18% Similarity=0.240 Sum_probs=130.2
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc--c----
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--K---- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--~---- 498 (628)
+|+..+.+|.|+||.||+|.. .+|+.||+|+++.. .....+.+.+|++++++++||||+++++++..... .
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~ 80 (265)
T cd08217 1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM 80 (265)
T ss_pred CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence 477889999999999999986 67899999998653 23345678899999999999999999886532110 0
Q ss_pred -----------------------------------------------------------------------ccccccccc
Q 037488 499 -----------------------------------------------------------------------ADFGMAKPL 507 (628)
Q Consensus 499 -----------------------------------------------------------------------~DFGla~~~ 507 (628)
+|||+++..
T Consensus 81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~ 160 (265)
T cd08217 81 EYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKIL 160 (265)
T ss_pred hhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccc
Confidence 267776654
Q ss_pred cccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecc
Q 037488 508 LKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587 (628)
Q Consensus 508 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (628)
..... ......|+..|+|||++.+..++.++|||||||++|+|++|+.||.... ...+.......
T Consensus 161 ~~~~~--~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-----~~~~~~~~~~~-------- 225 (265)
T cd08217 161 GHDSS--FAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARN-----QLQLASKIKEG-------- 225 (265)
T ss_pred cCCcc--cccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcC-----HHHHHHHHhcC--------
Confidence 32221 1234568999999999999889999999999999999999999997532 11111111000
Q ss_pred cccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ....+...+.++.+++.+||+.+|++||++.+|
T Consensus 226 ----~---~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~i 259 (265)
T cd08217 226 ----K---FRRIPYRYSSELNEVIKSMLNVDPDKRPSTEEL 259 (265)
T ss_pred ----C---CCCCccccCHHHHHHHHHHccCCcccCCCHHHH
Confidence 0 011223445679999999999999999998764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi |
| >KOG0586 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-22 Score=201.31 Aligned_cols=183 Identities=22% Similarity=0.231 Sum_probs=142.4
Q ss_pred HHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 422 LFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 422 l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
.....+.|.+.+.||.|.|+.|..|+. .+|..||+|.++... ....+.+.+|+++|+.++|||||+++.+.......
T Consensus 51 ~~~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~l 130 (596)
T KOG0586|consen 51 DSNSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATL 130 (596)
T ss_pred ccccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeeccee
Confidence 345578899999999999999999987 679999999998653 33345589999999999999999999876532211
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||++..+...
T Consensus 131 ylV~eya~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~-- 208 (596)
T KOG0586|consen 131 YLVMEYASGGELFDYLVKHGRMKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENMNIKIADFGFSTFFDYG-- 208 (596)
T ss_pred EEEEEeccCchhHHHHHhcccchhhhhhhhhHHHHHHHHHHhhcceeccccchhhcccccccceeeeccccceeeccc--
Confidence 599999987643
Q ss_pred ccccccccccccccCccccccCcc-CcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 513 SLIQTQTLATIGYMAPEYGREGRV-STNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
....+.+|++.|.|||++.|.+| ++++|+||+|+|+|-|+.|..||++..- ...-++.+.+
T Consensus 209 -~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~l-----------------k~Lr~rvl~g 270 (596)
T KOG0586|consen 209 -LMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNL-----------------KELRPRVLRG 270 (596)
T ss_pred -ccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCccc-----------------ccccchheee
Confidence 34467899999999999999887 6899999999999999999999986321 1111222222
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. .++.-.+.++.+++.+++..+|.+|++++++
T Consensus 271 k~----rIp~~ms~dce~lLrk~lvl~Pskr~~~dqi 303 (596)
T KOG0586|consen 271 KY----RIPFYMSCDCEDLLRKFLVLNPSKRGPCDQI 303 (596)
T ss_pred ee----cccceeechhHHHHHHhhccCccccCCHHHh
Confidence 22 2233345668899999999999999998764
|
|
| >cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-22 Score=197.57 Aligned_cols=198 Identities=22% Similarity=0.238 Sum_probs=131.7
Q ss_pred CCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCC--Ccc-----
Q 037488 429 FSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSND--DFK----- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~----- 498 (628)
|...+.||+|+||.||+|.. .+|+.+|+|++.... ....+.+.+|++++++++|||++++++++... ...
T Consensus 1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e 80 (287)
T cd07840 1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE 80 (287)
T ss_pred CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence 56778999999999999987 468999999997653 33456688999999999999999999988765 111
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++....... ....
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~-~~~~ 159 (287)
T cd07840 81 YMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNS-ADYT 159 (287)
T ss_pred cccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccceeeccCCCc-cccc
Confidence 38888876543321 1123
Q ss_pred cccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcC---Cccceeec----ccc
Q 037488 518 QTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLP---ISVMKVVD----AHL 589 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~ 589 (628)
...++..|+|||.+.+ ..++.++|||||||++|||+||+.||...... ............ ..+....+ ...
T Consensus 160 ~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (287)
T cd07840 160 NRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTEL-EQLEKIFELCGSPTDENWPGVSKLPWFENL 238 (287)
T ss_pred ccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHhCCCchhhccccccchhhhhc
Confidence 3467889999998765 45899999999999999999999999753221 111111110000 00000000 000
Q ss_pred cCCcc----cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 LSQED----KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 ~~~~~----~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..... ........++.++.+++.+||+.+|++||++.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~ 281 (287)
T cd07840 239 KPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQA 281 (287)
T ss_pred cccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 00000 0001111136789999999999999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po |
| >cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.9e-22 Score=200.18 Aligned_cols=179 Identities=22% Similarity=0.307 Sum_probs=129.1
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch---hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR---EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|+..+.||+|+||.||+|.. .+++.||+|.+..... ...+.+.+|+++++.++||||+++++++..+...
T Consensus 1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~ 80 (316)
T cd05574 1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM 80 (316)
T ss_pred CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence 3688889999999999999987 4589999999975432 3456788999999999999999998876543211
Q ss_pred ----------------------------------------------------------------ccccccccccccCcc-
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQS- 513 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~- 513 (628)
+|||++.........
T Consensus 81 e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~ 160 (316)
T cd05574 81 DYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPV 160 (316)
T ss_pred EecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchhhccccccccc
Confidence 288887654221100
Q ss_pred --------------------------cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCc
Q 037488 514 --------------------------LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEM 567 (628)
Q Consensus 514 --------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~ 567 (628)
......+||..|+|||++.+..++.++|||||||++|||++|+.||.......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~- 239 (316)
T cd05574 161 SKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDE- 239 (316)
T ss_pred ccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchHH-
Confidence 01123468999999999999889999999999999999999999996532211
Q ss_pred cHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCC
Q 037488 568 TLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
.+... .+... ........+.++.+++.+||+.||++|||
T Consensus 240 ---~~~~~---------~~~~~------~~~~~~~~~~~~~~li~~~l~~~p~~R~s 278 (316)
T cd05574 240 ---TFSNI---------LKKEV------TFPGSPPVSSSARDLIRKLLVKDPSKRLG 278 (316)
T ss_pred ---HHHHH---------hcCCc------cCCCccccCHHHHHHHHHHccCCHhHCCC
Confidence 11100 00000 00111114567999999999999999999
|
Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin |
| >KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-22 Score=195.30 Aligned_cols=191 Identities=24% Similarity=0.326 Sum_probs=123.7
Q ss_pred CCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhh--cccCCCcceeeeeccCCCcc--------
Q 037488 429 FSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMK--HIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~--~l~h~niv~l~~~~~~~~~~-------- 498 (628)
....+.||+|.||.||||++. ++.||||++... ..+.|..|-+|.+ .++|+||++++++-..++..
T Consensus 212 l~l~eli~~Grfg~V~KaqL~-~~~VAVKifp~~---~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt 287 (534)
T KOG3653|consen 212 LQLLELIGRGRFGCVWKAQLD-NRLVAVKIFPEQ---EKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVT 287 (534)
T ss_pred hhhHHHhhcCccceeehhhcc-CceeEEEecCHH---HHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEe
Confidence 344578999999999999987 699999999754 3455677766666 45899999998875443310
Q ss_pred ----------------------------------------------------------------------cccccccccc
Q 037488 499 ----------------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 499 ----------------------------------------------------------------------~DFGla~~~~ 508 (628)
+|||+|..+.
T Consensus 288 ~fh~kGsL~dyL~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~ 367 (534)
T KOG3653|consen 288 EFHPKGSLCDYLKANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLE 367 (534)
T ss_pred eeccCCcHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEec
Confidence 4999999887
Q ss_pred ccCcccccccccccccccCccccccCc-cC-----cccchhhHhHHHHHHhhCCCCCCc-ccCC-CccHHHHHHhhcCCc
Q 037488 509 KEDQSLIQTQTLATIGYMAPEYGREGR-VS-----TNGDVYSFGIMLIETFTRKKPTDE-IFSG-EMTLKHWVNDLLPIS 580 (628)
Q Consensus 509 ~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~-----~~~DVwS~Gvvl~e~ltg~~p~~~-~~~~-~~~~~~~~~~~~~~~ 580 (628)
+..........+||.+|||||++.|.- +. .+.||||+|.|||||+++..-++. ..+. +..+...+.. ...
T Consensus 368 p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~--hPt 445 (534)
T KOG3653|consen 368 PGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGN--HPT 445 (534)
T ss_pred CCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcC--CCC
Confidence 655444445689999999999998642 21 368999999999999998764431 1111 1111111100 000
Q ss_pred cce----eecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 581 VMK----VVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 581 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
+.+ ++.+.........+. ....+..+.+.+..||..||+.|.|+.
T Consensus 446 ~e~mq~~VV~kK~RP~~p~~W~-~h~~~~~l~et~EeCWDhDaeARLTA~ 494 (534)
T KOG3653|consen 446 LEEMQELVVRKKQRPKIPDAWR-KHAGMAVLCETIEECWDHDAEARLTAG 494 (534)
T ss_pred HHHHHHHHHhhccCCCChhhhh-cCccHHHHHHHHHHHcCCchhhhhhhH
Confidence 100 111111111111000 012356789999999999999999975
|
|
| >KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-23 Score=188.56 Aligned_cols=203 Identities=18% Similarity=0.219 Sum_probs=132.7
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeec--cchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDL--QYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
.+.|.....||+|.||.||+|+. .+|+.||+|++-. ..........+|+++|..++|+|++.+++.|......
T Consensus 16 ~~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~ 95 (376)
T KOG0669|consen 16 VSKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRD 95 (376)
T ss_pred chHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccc
Confidence 34566778999999999999986 5688899987633 2233345578999999999999999999888532100
Q ss_pred ----------------------------------------------------------------------cccccccccc
Q 037488 499 ----------------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 499 ----------------------------------------------------------------------~DFGla~~~~ 508 (628)
+|||+||.+.
T Consensus 96 r~t~ylVf~~cehDLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklADFGlar~fs 175 (376)
T KOG0669|consen 96 RATFYLVFDFCEHDLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLADFGLARAFS 175 (376)
T ss_pred cceeeeeHHHhhhhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEeecccccccee
Confidence 5999998764
Q ss_pred ccCc--ccccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCc-c-HHHHHHhhcCCccce
Q 037488 509 KEDQ--SLIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEM-T-LKHWVNDLLPISVMK 583 (628)
Q Consensus 509 ~~~~--~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~-~-~~~~~~~~~~~~~~~ 583 (628)
.... .-..+..+.|++|++||.+.|. .|+++.|||+.|||+.||.||.+-+.+...... . +........++.+.+
T Consensus 176 ~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevWP~ 255 (376)
T KOG0669|consen 176 TSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWPN 255 (376)
T ss_pred cccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccCCC
Confidence 3321 1123456789999999998875 499999999999999999999987765322110 0 111111111111111
Q ss_pred eecccccCCc------ccchh------chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 584 VVDAHLLSQE------DKHFV------IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 584 ~~~~~~~~~~------~~~~~------~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..-.+.... ..... .|.--..++.+|+.+++..||.+|++++++
T Consensus 256 ~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~a 312 (376)
T KOG0669|consen 256 VDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQA 312 (376)
T ss_pred cccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhh
Confidence 1110000000 00000 000112368899999999999999998764
|
|
| >cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.9e-22 Score=198.83 Aligned_cols=203 Identities=23% Similarity=0.217 Sum_probs=133.8
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCC----
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDD---- 496 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~---- 496 (628)
.+.++|+..+.||+|+||.||+|.. .+|+.||+|+++... ......+.+|++++++++||||+++++++.+.+
T Consensus 4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~ 83 (302)
T cd07864 4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD 83 (302)
T ss_pred hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence 4567899999999999999999997 568999999997543 223356778999999999999999988765432
Q ss_pred ------cc------------------------------------------------------------------cccccc
Q 037488 497 ------FK------------------------------------------------------------------ADFGMA 504 (628)
Q Consensus 497 ------~~------------------------------------------------------------------~DFGla 504 (628)
.. +|||++
T Consensus 84 ~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg~~ 163 (302)
T cd07864 84 FKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLA 163 (302)
T ss_pred ccccCCcEEEEEcccCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEEeCccccc
Confidence 00 388888
Q ss_pred ccccccCcccccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhh---cCCc
Q 037488 505 KPLLKEDQSLIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDL---LPIS 580 (628)
Q Consensus 505 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~---~~~~ 580 (628)
+....... .......++..|+|||++.+. .++.++||||+||++|||++|++||..... ...+....... .+..
T Consensus 164 ~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 241 (302)
T cd07864 164 RLYNSEES-RPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQE-LAQLELISRLCGSPCPAV 241 (302)
T ss_pred ccccCCcc-cccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHhCCCChhh
Confidence 76533221 111233578899999988653 578999999999999999999999964221 11111111111 0001
Q ss_pred cceeecccccCCc-------ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 581 VMKVVDAHLLSQE-------DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 581 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..+......... ..........+.++.+++.+||+.||++|||+.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~i 296 (302)
T cd07864 242 WPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEA 296 (302)
T ss_pred cccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHH
Confidence 1111000000000 00001112346779999999999999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely |
| >KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-22 Score=205.67 Aligned_cols=131 Identities=27% Similarity=0.469 Sum_probs=108.8
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeee--------------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISS-------------- 491 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~-------------- 491 (628)
.+...+.+|+|+||.||+|+. .+|+.||||.++.. ....++...+|+++|++++|||||+++++
T Consensus 14 ~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~v 93 (732)
T KOG4250|consen 14 LWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPV 93 (732)
T ss_pred ceeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccce
Confidence 345567899999999999995 78999999999753 33445667899999999999999998764
Q ss_pred -----ccCCCcc------------------------------------------------------------cccccccc
Q 037488 492 -----CSNDDFK------------------------------------------------------------ADFGMAKP 506 (628)
Q Consensus 492 -----~~~~~~~------------------------------------------------------------~DFGla~~ 506 (628)
|.+++.. +|||.||.
T Consensus 94 lvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Are 173 (732)
T KOG4250|consen 94 LVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARE 173 (732)
T ss_pred EEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeeccccccc
Confidence 4443321 49999998
Q ss_pred ccccCcccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCc
Q 037488 507 LLKEDQSLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDE 561 (628)
Q Consensus 507 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~ 561 (628)
+..+. ...+.+||..|.|||+... +.|+..+|-|||||++||.+||..||..
T Consensus 174 l~d~s---~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p 226 (732)
T KOG4250|consen 174 LDDNS---LFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIP 226 (732)
T ss_pred CCCCC---eeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCc
Confidence 75543 4477899999999999995 8899999999999999999999999964
|
|
| >cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-22 Score=195.47 Aligned_cols=174 Identities=23% Similarity=0.399 Sum_probs=127.2
Q ss_pred cCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-------- 498 (628)
++|...+.||+|+||.||+|.. .++.||+|.++... ....+.+|+.++++++||||+++++++..+...
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~v~e~~~~ 82 (254)
T cd05083 6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV--TAQAFLEETAVMTKLHHKNLVRLLGVILHNGLYIVMELMSK 82 (254)
T ss_pred HHceeeeeeccCCCCceEeccc-CCCceEEEeecCcc--hHHHHHHHHHHHHhCCCCCcCeEEEEEcCCCcEEEEECCCC
Confidence 4678889999999999999875 57889999986532 235688999999999999999999876432211
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||+++..... ....
T Consensus 83 ~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~-----~~~~ 157 (254)
T cd05083 83 GNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMG-----VDNS 157 (254)
T ss_pred CCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCccceecccc-----CCCC
Confidence 388888753221 1223
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
.++..|+|||++.++.++.++|||||||++|||++ |+.||......+ ....... . ....
T Consensus 158 ~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~--~~~~~~~------------~------~~~~ 217 (254)
T cd05083 158 KLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKE--VKECVEK------------G------YRME 217 (254)
T ss_pred CCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHHH--HHHHHhC------------C------CCCC
Confidence 45678999999998899999999999999999998 999986532211 1111100 0 0011
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+..++.++.+++.+||+.+|++||++.++
T Consensus 218 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l 247 (254)
T cd05083 218 PPEGCPADVYVLMTSCWETEPKKRPSFHKL 247 (254)
T ss_pred CCCcCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 122346678999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki |
| >cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 | Back alignment and domain information |
|---|
Probab=99.86 E-value=9e-22 Score=196.57 Aligned_cols=198 Identities=20% Similarity=0.220 Sum_probs=131.1
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch-hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR-EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
+|+..+.||+|++|.||+|+. .+|+.||||+++.... .....+.+|++++++++||||+++++++..++..
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 80 (284)
T cd07836 1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYM 80 (284)
T ss_pred CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecC
Confidence 478889999999999999997 5699999999976432 2345677899999999999999999987653211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++...... ....
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~--~~~~ 158 (284)
T cd07836 81 DKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPV--NTFS 158 (284)
T ss_pred CccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCc--cccc
Confidence 3788776442221 1123
Q ss_pred cccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhc-CC--ccceeec-ccccCC
Q 037488 518 QTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL-PI--SVMKVVD-AHLLSQ 592 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~-~~~~~~ 592 (628)
...+|..|+|||++.+. .++.++||||+||++|||++|+.||.+....+ .......... +. .+....+ +.....
T Consensus 159 ~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (284)
T cd07836 159 NEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNED-QLLKIFRIMGTPTESTWPGISQLPEYKPT 237 (284)
T ss_pred cccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHhCCCChhhHHHHhcCchhccc
Confidence 34688999999988664 47899999999999999999999997543211 1111111100 00 0000000 000000
Q ss_pred cc-----cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 ED-----KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~-----~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. ......+..+.++.+++.+|++.||++||++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~ 278 (284)
T cd07836 238 FPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDA 278 (284)
T ss_pred ccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHH
Confidence 00 0001112345678999999999999999998764
|
Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. |
| >cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4 | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-22 Score=198.67 Aligned_cols=177 Identities=24% Similarity=0.279 Sum_probs=128.0
Q ss_pred ccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------------
Q 037488 432 NNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------------ 498 (628)
Q Consensus 432 ~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------------ 498 (628)
...||+|+||.||++.. .+|+.||||++..........+.+|+.+++.++||||+++++++..++..
T Consensus 25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L 104 (292)
T cd06657 25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGAL 104 (292)
T ss_pred HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcH
Confidence 35799999999999987 67999999998655444556789999999999999999999876543211
Q ss_pred -----------------------------------------------------ccccccccccccCcccccccccccccc
Q 037488 499 -----------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLATIGY 525 (628)
Q Consensus 499 -----------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt~~y 525 (628)
+|||++........ ......||.+|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y 182 (292)
T cd06657 105 TDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--RRKSLVGTPYW 182 (292)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccceecccccc--cccccccCccc
Confidence 38888775433211 11335689999
Q ss_pred cCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHH
Q 037488 526 MAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVS 605 (628)
Q Consensus 526 ~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (628)
+|||+..+..++.++||||+||++|||++|+.||..... ...........+.. ......++.
T Consensus 183 ~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~--~~~~~~~~~~~~~~----------------~~~~~~~~~ 244 (292)
T cd06657 183 MAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDNLPPK----------------LKNLHKVSP 244 (292)
T ss_pred cCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhhCCcc----------------cCCcccCCH
Confidence 999999888899999999999999999999999864211 11111111111100 001112345
Q ss_pred HHHHHhhcccCCCcccCCCCCCC
Q 037488 606 FVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 606 ~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+.+++.+||+.||.+||++.++
T Consensus 245 ~l~~li~~~l~~~P~~R~~~~~l 267 (292)
T cd06657 245 SLKGFLDRLLVRDPAQRATAAEL 267 (292)
T ss_pred HHHHHHHHHHhCCcccCcCHHHH
Confidence 68899999999999999998763
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo |
| >cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-22 Score=197.28 Aligned_cols=184 Identities=27% Similarity=0.297 Sum_probs=132.8
Q ss_pred HhhcCCCcccccccCCccEEEEEEec-CCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRIH-YGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
...+.|+..+.+|+|+||.||+|... +++.||+|+++.... ..+.+.+|+++++.++|+||+++++++..++..
T Consensus 16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~ 94 (286)
T cd06614 16 DPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVM 94 (286)
T ss_pred CccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEE
Confidence 45677888899999999999999874 789999999976544 456788999999999999999999876432211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||++........ .
T Consensus 95 e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~--~ 172 (286)
T cd06614 95 EYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKS--K 172 (286)
T ss_pred eccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhhhhccchh--h
Confidence 37776654322211 1
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
.....|+..|+|||++.+..++.++|||||||++|||++|+.||....+.. ....+... .. .
T Consensus 173 ~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~-~~~~~~~~------------~~-----~ 234 (286)
T cd06614 173 RNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLR-ALFLITTK------------GI-----P 234 (286)
T ss_pred hccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhc------------CC-----C
Confidence 123458899999999988889999999999999999999999986432110 01111000 00 0
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++.+++.+||+.+|.+|||+.++
T Consensus 235 ~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i 267 (286)
T cd06614 235 PLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEEL 267 (286)
T ss_pred CCcchhhCCHHHHHHHHHHhccChhhCcCHHHH
Confidence 001112245679999999999999999998764
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou |
| >cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3 | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-21 Score=198.82 Aligned_cols=175 Identities=25% Similarity=0.291 Sum_probs=125.2
Q ss_pred CCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 429 FSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
|...+.||+|+||.||+|+. .+|+.||+|++... .....+.+.+|+++++.++|||++++++++.+++..
T Consensus 23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 102 (313)
T cd06633 23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY 102 (313)
T ss_pred hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence 55667899999999999987 56899999998643 223446788999999999999999999887553311
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||++..... ...
T Consensus 103 ~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~------~~~ 176 (313)
T cd06633 103 CLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSP------ANS 176 (313)
T ss_pred CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCcccCC------CCC
Confidence 37777653211 134
Q ss_pred ccccccccCccccc---cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 519 TLATIGYMAPEYGR---EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 519 ~~gt~~y~aPE~~~---~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
..|+..|+|||++. ++.++.++|||||||++|||++|++||....... ....... ... +
T Consensus 177 ~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~--~~~~~~~---~~~-----~-------- 238 (313)
T cd06633 177 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS--ALYHIAQ---NDS-----P-------- 238 (313)
T ss_pred ccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHH--HHHHHHh---cCC-----C--------
Confidence 56899999999984 4568999999999999999999999986532111 0000000 000 0
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+..+.+++.+||+.+|.+||++.++
T Consensus 239 -~~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~ 270 (313)
T cd06633 239 -TLQSNEWTDSFRGFVDYCLQKIPQERPASAEL 270 (313)
T ss_pred -CCCccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence 00011234558899999999999999998764
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co |
| >smart00219 TyrKc Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-22 Score=193.73 Aligned_cols=178 Identities=26% Similarity=0.522 Sum_probs=128.5
Q ss_pred CcccccccCCccEEEEEEec-CC----cEEEEEEeeccchh-HHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 430 SENNLIDRGGIGYVYKRRIH-YG----MEVAVKVFDLQYRE-AFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 430 ~~~~~ig~G~~g~V~~~~~~-~~----~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
+..+.||+|+||.||+++.. .+ ..||+|++...... ..+.+.+|++.++.++||||+++++++...+..
T Consensus 2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e 81 (258)
T smart00219 2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVME 81 (258)
T ss_pred cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEe
Confidence 45678999999999999873 33 88999999754432 567889999999999999999999876542210
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++.........
T Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~- 160 (258)
T smart00219 82 YMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYK- 160 (258)
T ss_pred ccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCceecccccccc-
Confidence 3899887654332211
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
.....++..|+|||.+.+..++.++||||+||++|||++ |++||..... .......... .
T Consensus 161 ~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~--~~~~~~~~~~---~-------------- 221 (258)
T smart00219 161 KKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSN--EEVLEYLKKG---Y-------------- 221 (258)
T ss_pred cccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHhcC---C--------------
Confidence 112337889999999988889999999999999999998 7888864211 1111111100 0
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++.+++.+||..||++|||+.|+
T Consensus 222 -~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l 254 (258)
T smart00219 222 -RLPKPENCPPEIYKLMLQCWAEDPEDRPTFSEL 254 (258)
T ss_pred -CCCCCCcCCHHHHHHHHHHCcCChhhCcCHHHH
Confidence 011122356679999999999999999998764
|
Phosphotransferases. Tyrosine-specific kinase subfamily. |
| >cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-22 Score=201.77 Aligned_cols=184 Identities=16% Similarity=0.209 Sum_probs=126.5
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|...+.||+|+||.||+++. .+++.+|+|++.... ......+.+|+.++..++||+|+++++++.+++..
T Consensus 1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ 80 (332)
T cd05623 1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM 80 (332)
T ss_pred CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence 4688899999999999999987 568899999986422 22344578899999999999999998876543211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+....... ..
T Consensus 81 ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~-~~ 159 (332)
T cd05623 81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGT-VQ 159 (332)
T ss_pred eccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecchheecccCCc-ce
Confidence 49999976533321 12
Q ss_pred cccccccccccCccccc-----cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 516 QTQTLATIGYMAPEYGR-----EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~-----~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
....+||+.|||||++. .+.++.++|||||||++|||++|+.||.... .............
T Consensus 160 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~-----~~~~~~~i~~~~~--------- 225 (332)
T cd05623 160 SSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAES-----LVETYGKIMNHKE--------- 225 (332)
T ss_pred ecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCC-----HHHHHHHHhCCCc---------
Confidence 23457999999999986 3468999999999999999999999996532 1111111110000
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCccc--CCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEE--RVNAKE 627 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~--Rpt~~e 627 (628)
.. ..+.....++.++++++.+|+..++++ |+++.|
T Consensus 226 -~~-~~p~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~ 262 (332)
T cd05623 226 -RF-QFPAQVTDVSEDAKDLIRRLICSREHRLGQNGIED 262 (332)
T ss_pred -cc-cCCCccccCCHHHHHHHHHHccChhhhcCCCCHHH
Confidence 00 001111245677999999998765544 556544
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw |
| >cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-22 Score=195.47 Aligned_cols=173 Identities=25% Similarity=0.408 Sum_probs=120.3
Q ss_pred cccccCCccEEEEEEe-cCCc--EEEEEEeecc-chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCc----------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGM--EVAVKVFDLQ-YREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDF---------- 497 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~--~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~---------- 497 (628)
+.||+|+||.||+|+. .++. .+|+|.++.. .....+.+.+|++++.++ +||||++++++|.....
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~ 80 (270)
T cd05047 1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH 80 (270)
T ss_pred CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence 3689999999999987 3444 5788888643 234456788999999999 89999999887543210
Q ss_pred ------------------------------------------------------------------------cccccccc
Q 037488 498 ------------------------------------------------------------------------KADFGMAK 505 (628)
Q Consensus 498 ------------------------------------------------------------------------~~DFGla~ 505 (628)
.+|||+++
T Consensus 81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl~~ 160 (270)
T cd05047 81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR 160 (270)
T ss_pred CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECCCCCcc
Confidence 03888775
Q ss_pred cccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCcccee
Q 037488 506 PLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKV 584 (628)
Q Consensus 506 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (628)
..... .......++..|+|||++.+..++.++|||||||++|||++ |+.||..... .........
T Consensus 161 ~~~~~---~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~-----~~~~~~~~~------ 226 (270)
T cd05047 161 GQEVY---VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-----AELYEKLPQ------ 226 (270)
T ss_pred ccchh---hhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCH-----HHHHHHHhC------
Confidence 32111 01112234678999999988889999999999999999997 9999965321 111111100
Q ss_pred ecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 585 VDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .....+..++.++.+++.+||+.||.+|||+.|+
T Consensus 227 ---~------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i 261 (270)
T cd05047 227 ---G------YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQI 261 (270)
T ss_pred ---C------CCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHH
Confidence 0 0011222345678999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l |
| >cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-21 Score=192.00 Aligned_cols=181 Identities=19% Similarity=0.237 Sum_probs=130.9
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc-----chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc--c
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ-----YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--K 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--~ 498 (628)
.+|...+.||+|+||.||+|+. .+++.||+|.+... .....+.+.+|++++++++||||+++++++.+.+. .
T Consensus 2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (264)
T cd06653 2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL 81 (264)
T ss_pred CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence 4788899999999999999987 56999999987532 12345678899999999999999999987644211 0
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+++.......
T Consensus 82 ~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~ 161 (264)
T cd06653 82 SIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICM 161 (264)
T ss_pred EEEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECccccccccccccc
Confidence 39999886532111
Q ss_pred -ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 513 -SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 513 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
........|+..|+|||++.+..++.++|||||||++|||++|+.||.+... ........ .
T Consensus 162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~~~-~------------- 223 (264)
T cd06653 162 SGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEA----MAAIFKIA-T------------- 223 (264)
T ss_pred cCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCH----HHHHHHHH-c-------------
Confidence 0111235689999999999988899999999999999999999999965311 11111100 0
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
.+.....+...+.++.+++.+||+. |.+|||+.+
T Consensus 224 -~~~~~~~p~~~~~~~~~~i~~~l~~-~~~r~~~~~ 257 (264)
T cd06653 224 -QPTKPMLPDGVSDACRDFLKQIFVE-EKRRPTAEF 257 (264)
T ss_pred -CCCCCCCCcccCHHHHHHHHHHhcC-cccCccHHH
Confidence 0011123344567799999999994 799999765
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho |
| >cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=193.92 Aligned_cols=180 Identities=21% Similarity=0.307 Sum_probs=119.4
Q ss_pred cccccCCccEEEEEEec---CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----------
Q 037488 433 NLIDRGGIGYVYKRRIH---YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---------- 498 (628)
+.||+|+||.||+|... ....+|+|.+.... ......+.+|+++++.++||||++++++|......
T Consensus 1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g 80 (269)
T cd05042 1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLG 80 (269)
T ss_pred CcCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCC
Confidence 35899999999999753 24568888876433 33346688999999999999999999876543211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++............
T Consensus 81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~ 160 (269)
T cd05042 81 DLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKD 160 (269)
T ss_pred cHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccccccccccchheeccC
Confidence 3999887543322111123
Q ss_pred cccccccccCcccccc-------CccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccc
Q 037488 518 QTLATIGYMAPEYGRE-------GRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~-------~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (628)
...++..|+|||+... ..++.++|||||||++|||++ |+.||......+ .+...... .......
T Consensus 161 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~-~~~~~~~~----~~~~~~~--- 232 (269)
T cd05042 161 CHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQ-VLKQVVRE----QDIKLPK--- 232 (269)
T ss_pred CCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHH-HHHHHhhc----cCccCCC---
Confidence 3457788999998643 357889999999999999999 788886532211 11111100 0000000
Q ss_pred cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..+..++.+..+++..|| .||++|||+.||
T Consensus 233 -------~~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v 263 (269)
T cd05042 233 -------PQLDLKYSDRWYEVMQFCW-LDPETRPTAEEV 263 (269)
T ss_pred -------CcccccCCHHHHHHHHHHh-cCcccccCHHHH
Confidence 1112234566888999999 599999999874
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina |
| >cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-21 Score=192.91 Aligned_cols=173 Identities=18% Similarity=0.211 Sum_probs=123.8
Q ss_pred cccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------------
Q 037488 435 IDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------------ 498 (628)
Q Consensus 435 ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------------ 498 (628)
||+|+||.||+|.. .+|+.||+|.+.... ......+.+|+++++.++||||+++++++..++..
T Consensus 1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L 80 (277)
T cd05577 1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL 80 (277)
T ss_pred CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence 69999999999986 579999999986532 22345677899999999999999998876443211
Q ss_pred --------------------------------------------------------ccccccccccccCccccccccccc
Q 037488 499 --------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLAT 522 (628)
Q Consensus 499 --------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt 522 (628)
+|||+++...... ......|+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~ 157 (277)
T cd05577 81 KYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGK---KIKGRAGT 157 (277)
T ss_pred HHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcchhhhccCC---ccccccCC
Confidence 3888887543221 12335688
Q ss_pred ccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhh
Q 037488 523 IGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQ 602 (628)
Q Consensus 523 ~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (628)
..|+|||++.++.++.++||||+||++|||++|+.||....... ......... .......+..
T Consensus 158 ~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~~~----------------~~~~~~~~~~ 220 (277)
T cd05577 158 PGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKV-EKEELKRRT----------------LEMAVEYPDK 220 (277)
T ss_pred CCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccc-cHHHHHhcc----------------ccccccCCcc
Confidence 99999999988889999999999999999999999996532211 111111000 0001112233
Q ss_pred hHHHHHHHhhcccCCCcccCCCCCC
Q 037488 603 CVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 603 ~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
.+..+.+++.+||+.||++||+++|
T Consensus 221 ~~~~~~~li~~~l~~~p~~R~~~~~ 245 (277)
T cd05577 221 FSPEAKDLCEALLQKDPEKRLGCRG 245 (277)
T ss_pred CCHHHHHHHHHHccCChhHccCCCc
Confidence 4667899999999999999997655
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of |
| >cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-22 Score=197.63 Aligned_cols=198 Identities=21% Similarity=0.222 Sum_probs=131.6
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch--hHHHHHHHHHHHhhcccCCCcceeeeeccCCC--cc---
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR--EAFKNFDIECDMMKHIRHRNLIKIISSCSNDD--FK--- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~--- 498 (628)
++|+..+.||+|+||.||+|.. .+++.+|+|.++.... .....+.+|+.++++++||||+++++++...+ ..
T Consensus 5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv 84 (293)
T cd07843 5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV 84 (293)
T ss_pred hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence 5788889999999999999997 4689999999975432 22345778999999999999999998775431 10
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++...... ..
T Consensus 85 ~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~--~~ 162 (293)
T cd07843 85 MEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPL--KP 162 (293)
T ss_pred ehhcCcCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCceeeccCCc--cc
Confidence 3899888654321 11
Q ss_pred cccccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc----cc---ee---
Q 037488 516 QTQTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS----VM---KV--- 584 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~----~~---~~--- 584 (628)
.....++..|+|||++.+.. ++.++||||+||++|||++|++||...... ........ ..... +. ..
T Consensus 163 ~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 240 (293)
T cd07843 163 YTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEI-DQLNKIFK-LLGTPTEKIWPGFSELPGA 240 (293)
T ss_pred cccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHH-HhCCCchHHHHHhhccchh
Confidence 23456889999999987654 689999999999999999999999753221 11111110 00000 00 00
Q ss_pred eccccc--CCcccchhchhh-hHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 585 VDAHLL--SQEDKHFVIKGQ-CVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 585 ~~~~~~--~~~~~~~~~~~~-~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...... .........+.. .+..+.+++.+||+.||++|||+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~el 287 (293)
T cd07843 241 KKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDA 287 (293)
T ss_pred cccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHHHH
Confidence 000000 000000011111 36678999999999999999998764
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the |
| >cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-22 Score=199.79 Aligned_cols=202 Identities=21% Similarity=0.191 Sum_probs=130.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch--hHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR--EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
.++|...+.||+|+||.||+|.. .+++.||||++..... .....+.+|++++++++||||+++++++.....
T Consensus 7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~ 86 (311)
T cd07866 7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK 86 (311)
T ss_pred cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence 57899999999999999999987 5689999999865322 223456789999999999999999876422110
Q ss_pred ---------------------------------------------------------------------ccccccccccc
Q 037488 498 ---------------------------------------------------------------------KADFGMAKPLL 508 (628)
Q Consensus 498 ---------------------------------------------------------------------~~DFGla~~~~ 508 (628)
.+|||+++...
T Consensus 87 ~~~~~lv~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~ 166 (311)
T cd07866 87 RGSVYMVTPYMDHDLSGLLENPSVKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLARPYD 166 (311)
T ss_pred CceEEEEEecCCcCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcCccchhcc
Confidence 03999887643
Q ss_pred ccCcc---------cccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcC
Q 037488 509 KEDQS---------LIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLP 578 (628)
Q Consensus 509 ~~~~~---------~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~ 578 (628)
..... ...+...|+..|+|||++.+. .++.++|||||||++|||++|++||.+..... ...........
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~-~~~~~~~~~~~ 245 (311)
T cd07866 167 GPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDID-QLHLIFKLCGT 245 (311)
T ss_pred CCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCC
Confidence 22111 111234678999999987654 58999999999999999999999996532211 11111110000
Q ss_pred ---Ccc------ceeecccccCCcccc-hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 579 ---ISV------MKVVDAHLLSQEDKH-FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 579 ---~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
... ....+.......+.. ..........+.+++.+||+.||++|||+.|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~el 305 (311)
T cd07866 246 PTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDA 305 (311)
T ss_pred CChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHH
Confidence 000 000000000000000 00111233668899999999999999998764
|
Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic |
| >cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-21 Score=190.25 Aligned_cols=183 Identities=20% Similarity=0.237 Sum_probs=133.9
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch-hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR-EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
++|+..+.||+|++|.||+|.. .+++.||||++..... ...+.+.+|++.+.+++||||+++++++..+...
T Consensus 1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~ 80 (264)
T cd06623 1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEY 80 (264)
T ss_pred CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEe
Confidence 3678889999999999999987 4699999999876543 4467789999999999999999999876543211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++........ ..
T Consensus 81 ~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~--~~ 158 (264)
T cd06623 81 MDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQ--CN 158 (264)
T ss_pred cCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceecccCCCc--cc
Confidence 377777654322211 12
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccch
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHF 597 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (628)
...|+..|+|||++.+..++.++||||||+++|||+||+.||..... ............. . ..
T Consensus 159 ~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~--~~~~~~~~~~~~~--------~-------~~ 221 (264)
T cd06623 159 TFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQ--PSFFELMQAICDG--------P-------PP 221 (264)
T ss_pred ceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccc--cCHHHHHHHHhcC--------C-------CC
Confidence 34688999999999988899999999999999999999999976432 1111111111100 0 00
Q ss_pred hchhh-hHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 598 VIKGQ-CVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 598 ~~~~~-~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+.. ++..+.+++.+||..+|++|||+.|+
T Consensus 222 ~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l 253 (264)
T cd06623 222 SLPAEEFSPEFRDFISACLQKDPKKRPSAAEL 253 (264)
T ss_pred CCCcccCCHHHHHHHHHHccCChhhCCCHHHH
Confidence 11112 45679999999999999999998764
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of |
| >cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-21 Score=193.98 Aligned_cols=196 Identities=22% Similarity=0.237 Sum_probs=129.0
Q ss_pred CCcccccccCCccEEEEEEec-CCcEEEEEEeeccc--hhHHHHHHHHHHHhhcc---cCCCcceeeeeccCCCc-----
Q 037488 429 FSENNLIDRGGIGYVYKRRIH-YGMEVAVKVFDLQY--REAFKNFDIECDMMKHI---RHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~~~~----- 497 (628)
|+..+.||+|+||.||+|+.. +++.||+|+++... ......+.+|+.+++++ +||||+++++++...+.
T Consensus 1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~ 80 (287)
T cd07838 1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK 80 (287)
T ss_pred CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence 567789999999999999984 58999999997432 22234566788777666 59999999988764332
Q ss_pred c-------------------------------------------------------------------cccccccccccc
Q 037488 498 K-------------------------------------------------------------------ADFGMAKPLLKE 510 (628)
Q Consensus 498 ~-------------------------------------------------------------------~DFGla~~~~~~ 510 (628)
. +|||+++.....
T Consensus 81 ~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~~ 160 (287)
T cd07838 81 LTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFE 160 (287)
T ss_pred eEEEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCcceeccCC
Confidence 0 388888765322
Q ss_pred CcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcC-Cc--cceee--
Q 037488 511 DQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLP-IS--VMKVV-- 585 (628)
Q Consensus 511 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~-~~--~~~~~-- 585 (628)
. ......++..|+|||++.+..++.++|||||||++|||++|++||...... .....+...... .. +....
T Consensus 161 ~---~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 236 (287)
T cd07838 161 M---ALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEA-DQLDKIFDVIGLPSEEEWPRNVSL 236 (287)
T ss_pred c---ccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChH-HHHHHHHHHcCCCChHhcCCCccc
Confidence 1 112345889999999999999999999999999999999999998753221 112222211100 00 00000
Q ss_pred cccccCC--cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 DAHLLSQ--EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....... ...........+.++.+++.+||+.||++||++.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~i 281 (287)
T cd07838 237 PRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEA 281 (287)
T ss_pred chhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHH
Confidence 0000000 000011112345678899999999999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both |
| >cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-22 Score=202.62 Aligned_cols=170 Identities=19% Similarity=0.218 Sum_probs=118.0
Q ss_pred cccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc---cCCCcceeeeeccCCCcc---------
Q 037488 435 IDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI---RHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 435 ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~~~~~--------- 498 (628)
||+|+||.||+|+. .+|+.||||++.... ......+.+|..++... +||||+++++++..++..
T Consensus 1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~ 80 (330)
T cd05586 1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG 80 (330)
T ss_pred CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence 69999999999987 569999999996532 22234456677777665 699999998765443211
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+++....... .....+|
T Consensus 81 g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~g 158 (330)
T cd05586 81 GELFWHLQKEGRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNK--TTNTFCG 158 (330)
T ss_pred ChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCC--CccCccC
Confidence 49999975433221 2234679
Q ss_pred cccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhch
Q 037488 522 TIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600 (628)
Q Consensus 522 t~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (628)
|+.|||||++.+. .++.++||||+||++|||++|+.||..... .......... ... . ..
T Consensus 159 t~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~-----~~~~~~i~~~------------~~~--~-~~ 218 (330)
T cd05586 159 TTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDT-----QQMYRNIAFG------------KVR--F-PK 218 (330)
T ss_pred CccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCH-----HHHHHHHHcC------------CCC--C-CC
Confidence 9999999998765 489999999999999999999999965221 1111111000 000 0 00
Q ss_pred hhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 601 GQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 601 ~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
...+.++.+++.+||+.||++||++.
T Consensus 219 ~~~~~~~~~li~~~L~~~P~~R~~~~ 244 (330)
T cd05586 219 NVLSDEGRQFVKGLLNRNPQHRLGAH 244 (330)
T ss_pred ccCCHHHHHHHHHHcCCCHHHCCCCC
Confidence 12355688999999999999999653
|
Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of |
| >cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-21 Score=196.66 Aligned_cols=197 Identities=20% Similarity=0.204 Sum_probs=130.5
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch-----hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR-----EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
+|...+.||+|+||.||+|.. .+|+.||||+++.... .....+..|++++++++||||+++++++.+++..
T Consensus 1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv 80 (298)
T cd07841 1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLV 80 (298)
T ss_pred CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEE
Confidence 477788999999999999987 5689999999975432 2334567899999999999999999877553211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++....... .
T Consensus 81 ~e~~~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~--~ 158 (298)
T cd07841 81 FEFMETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNR--K 158 (298)
T ss_pred EcccCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceeeeeccCCCc--c
Confidence 38888876533211 1
Q ss_pred cccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc----c---ceeecc
Q 037488 516 QTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS----V---MKVVDA 587 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~ 587 (628)
.....++..|+|||++.+ ..++.++|||||||++|||++|.+||....+. ......... .... + ....+.
T Consensus 159 ~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 236 (298)
T cd07841 159 MTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDI-DQLGKIFEA-LGTPTEENWPGVTSLPDY 236 (298)
T ss_pred ccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccH-HHHHHHHHH-cCCCchhhhhhccccccc
Confidence 233457889999998865 45789999999999999999998887643221 111111111 0000 0 000000
Q ss_pred cccCC--cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLSQ--EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~~--~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..... ...........+.++.+++.+||+.||++|||+.||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~ 279 (298)
T cd07841 237 VEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQA 279 (298)
T ss_pred ccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHH
Confidence 00000 000011122346779999999999999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is |
| >cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-22 Score=201.49 Aligned_cols=134 Identities=19% Similarity=0.320 Sum_probs=106.0
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|...+.||+|+||.||+++. .+++.||+|++.... ......+.+|+.++..++|+||+++++++.+++..
T Consensus 1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~ 80 (331)
T cd05624 1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM 80 (331)
T ss_pred CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence 4688899999999999999987 568899999997532 22345578899999999999999998876543311
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+....... ..
T Consensus 81 Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~-~~ 159 (331)
T cd05624 81 DYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGT-VQ 159 (331)
T ss_pred eCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCc-ee
Confidence 39999986543321 11
Q ss_pred cccccccccccCcccccc-----CccCcccchhhHhHHHHHHhhCCCCCCc
Q 037488 516 QTQTLATIGYMAPEYGRE-----GRVSTNGDVYSFGIMLIETFTRKKPTDE 561 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~-----~~~~~~~DVwS~Gvvl~e~ltg~~p~~~ 561 (628)
....+||+.|||||++.+ +.++.++|||||||++|||++|+.||..
T Consensus 160 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~ 210 (331)
T cd05624 160 SSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYA 210 (331)
T ss_pred eccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccC
Confidence 233579999999999875 5688999999999999999999999964
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. |
| >PTZ00024 cyclin-dependent protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=199.25 Aligned_cols=201 Identities=21% Similarity=0.194 Sum_probs=129.7
Q ss_pred hcCCCc-ccccccCCccEEEEEEe-cCCcEEEEEEeeccchhH--------------HHHHHHHHHHhhcccCCCcceee
Q 037488 426 TNGFSE-NNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREA--------------FKNFDIECDMMKHIRHRNLIKII 489 (628)
Q Consensus 426 ~~~~~~-~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~--------------~~~~~~E~~~l~~l~h~niv~l~ 489 (628)
.++|.. .+.||+|+||+||+|.. .+++.||||+++...... ...+.+|+++++.++||||++++
T Consensus 7 ~~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~ 86 (335)
T PTZ00024 7 SERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLV 86 (335)
T ss_pred ccchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeee
Confidence 355654 46799999999999986 579999999986432111 12467899999999999999999
Q ss_pred eeccCCCcc-----------------------------------------------------------------cccccc
Q 037488 490 SSCSNDDFK-----------------------------------------------------------------ADFGMA 504 (628)
Q Consensus 490 ~~~~~~~~~-----------------------------------------------------------------~DFGla 504 (628)
+++..++.. +|||++
T Consensus 87 ~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~~kl~dfg~~ 166 (335)
T PTZ00024 87 DVYVEGDFINLVMDIMASDLKKVVDRKIRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLA 166 (335)
T ss_pred EEEecCCcEEEEEeccccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCCEEECCccce
Confidence 987544321 399988
Q ss_pred ccccccC------------cccccccccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHH
Q 037488 505 KPLLKED------------QSLIQTQTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKH 571 (628)
Q Consensus 505 ~~~~~~~------------~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~ 571 (628)
+...... .........++..|+|||++.+.. ++.++||||+||++|||++|++||......+ .+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~-~~~~ 245 (335)
T PTZ00024 167 RRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEID-QLGR 245 (335)
T ss_pred eecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHH
Confidence 7653110 001112345788999999987654 7999999999999999999999997532211 1111
Q ss_pred HHHhhcCC----ccceee-----cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 572 WVNDLLPI----SVMKVV-----DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 572 ~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
... .... .+.... .+...............++.++.+++.+||+.+|++|||+.|+
T Consensus 246 i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~ 310 (335)
T PTZ00024 246 IFE-LLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEA 310 (335)
T ss_pred HHH-HhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHH
Confidence 111 1100 000000 0000000000011122346778999999999999999998764
|
|
| >KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-22 Score=194.84 Aligned_cols=182 Identities=20% Similarity=0.268 Sum_probs=135.1
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
..+.|..-++||+||||.||-++. .+|+.+|+|++.... .........|-.++.+++.|.||.+--.|+..+..
T Consensus 183 t~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LCl 262 (591)
T KOG0986|consen 183 TKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCL 262 (591)
T ss_pred cccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEE
Confidence 356788889999999999999886 679999999986432 33345678999999999999999985555433211
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|.|+|..+....
T Consensus 263 VLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~- 341 (591)
T KOG0986|consen 263 VLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGK- 341 (591)
T ss_pred EEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceEEecCCCC-
Confidence 3999998764432
Q ss_pred ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 513 SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
...+.+||.+|||||++.++.|+..+|.||+||++|||+.|+.||..... .... +-+|.....+
T Consensus 342 --~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~Ke-Kvk~-------------eEvdrr~~~~ 405 (591)
T KOG0986|consen 342 --PIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKE-KVKR-------------EEVDRRTLED 405 (591)
T ss_pred --ccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhh-hhhH-------------HHHHHHHhcc
Confidence 23556999999999999999999999999999999999999999964211 1000 0112221111
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
....+...+++++++....|++||++|--.+
T Consensus 406 ---~~ey~~kFS~eakslc~~LL~Kdp~~RLGcr 436 (591)
T KOG0986|consen 406 ---PEEYSDKFSEEAKSLCEGLLTKDPEKRLGCR 436 (591)
T ss_pred ---hhhcccccCHHHHHHHHHHHccCHHHhccCC
Confidence 1123345678899999999999999997654
|
|
| >cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=194.17 Aligned_cols=196 Identities=22% Similarity=0.214 Sum_probs=132.8
Q ss_pred CCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch--hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 429 FSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR--EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
|...+.||+|++|.||+|.. .+|+.+|+|+++.... .....+.+|++++++++||||+++++++..++..
T Consensus 1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~ 80 (283)
T cd05118 1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM 80 (283)
T ss_pred CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence 56678899999999999987 5789999999875432 2456788999999999999999999876543211
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||.+....... ......
T Consensus 81 ~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~--~~~~~~ 158 (283)
T cd05118 81 DTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPV--RPYTHY 158 (283)
T ss_pred CCCHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCc--ccccCc
Confidence 3888887654332 112335
Q ss_pred cccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC----ccceeec---cc---
Q 037488 520 LATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI----SVMKVVD---AH--- 588 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~--- 588 (628)
.++..|+|||.+.+. .++.++||||+||++|+|+||+.||......+ ..... ...... .+....+ ..
T Consensus 159 ~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (283)
T cd05118 159 VVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEID-QLFKI-FRTLGTPDPEVWPKFTSLARNYKFS 236 (283)
T ss_pred cCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHH-HHHcCCCchHhcccchhhhhhhhhh
Confidence 688999999998876 68999999999999999999999986532111 01000 000000 0000000 00
Q ss_pred c-cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 L-LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~-~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ..............+.++.+++.+||+.||.+||++.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~l 277 (283)
T cd05118 237 FPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQA 277 (283)
T ss_pred hccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHH
Confidence 0 000000111233467789999999999999999998764
|
Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They |
| >KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-22 Score=184.73 Aligned_cols=193 Identities=18% Similarity=0.210 Sum_probs=142.9
Q ss_pred cccccCCccEEEEEE-ecCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc------------
Q 037488 433 NLIDRGGIGYVYKRR-IHYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK------------ 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~------------ 498 (628)
+.+|+|+|+.|--+. ..+|+.+|||++++.....+.+..||++++..+ .|+||++|++++++++..
T Consensus 84 e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~GGpl 163 (463)
T KOG0607|consen 84 ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRGGPL 163 (463)
T ss_pred HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccCchH
Confidence 689999999999876 488999999999887666778899999999999 599999999999876532
Q ss_pred ---------------------------------------------------------ccccccccccccCc-----cccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQ-----SLIQ 516 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~-----~~~~ 516 (628)
|||.++..+.-... .-..
T Consensus 164 LshI~~~~~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L 243 (463)
T KOG0607|consen 164 LSHIQKRKHFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPEL 243 (463)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccc
Confidence 47777654322111 1122
Q ss_pred ccccccccccCccccc---c--CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhh-cCCccceeeccccc
Q 037488 517 TQTLATIGYMAPEYGR---E--GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDL-LPISVMKVVDAHLL 590 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~---~--~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 590 (628)
.+.+|+..|||||+.. + ..|+.++|.||+|||+|-|++|-+||.+....+.- |-+.. .+.-....+..+..
T Consensus 244 ~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCG---WdrGe~Cr~CQ~~LFesIQE 320 (463)
T KOG0607|consen 244 LTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCG---WDRGEVCRVCQNKLFESIQE 320 (463)
T ss_pred cCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCC---ccCCCccHHHHHHHHHHHhc
Confidence 4568999999999764 2 34899999999999999999999999865432211 00000 00001123344455
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.++++...|..++.++++++...+.+|+.+|-++.++
T Consensus 321 GkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~v 358 (463)
T KOG0607|consen 321 GKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQV 358 (463)
T ss_pred cCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhc
Confidence 66666667788899999999999999999999887653
|
|
| >cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-21 Score=201.19 Aligned_cols=198 Identities=21% Similarity=0.208 Sum_probs=132.5
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF---- 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 497 (628)
..++|...+.||+|+||.||+|.. .+|+.||||++... .......+.+|++++++++||||+++++++..+..
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 92 (343)
T cd07880 13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRF 92 (343)
T ss_pred cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccccc
Confidence 467899999999999999999986 67999999998643 22334567899999999999999999887643210
Q ss_pred ------------------------------------------------------------------cccccccccccccC
Q 037488 498 ------------------------------------------------------------------KADFGMAKPLLKED 511 (628)
Q Consensus 498 ------------------------------------------------------------------~~DFGla~~~~~~~ 511 (628)
.+|||+++.....
T Consensus 93 ~~~~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~- 171 (343)
T cd07880 93 HDFYLVMPFMGTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDSE- 171 (343)
T ss_pred ceEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccccccccC-
Confidence 0388888754321
Q ss_pred cccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC--ccceeecc-
Q 037488 512 QSLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI--SVMKVVDA- 587 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~- 587 (628)
.....+++.|+|||++.+ ..++.++||||+||++|++++|+.||....... ............ .+...+..
T Consensus 172 ----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 246 (343)
T cd07880 172 ----MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLD-QLMEIMKVTGTPSKEFVQKLQSE 246 (343)
T ss_pred ----ccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcCCCCHHHHHhhcch
Confidence 123468999999999876 458899999999999999999999997532111 111111100000 00000000
Q ss_pred -------cccC-CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 -------HLLS-QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 -------~~~~-~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+.. ...........++.++.+++.+|++.||++|||+.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~ 295 (343)
T cd07880 247 DAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEA 295 (343)
T ss_pred hHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHH
Confidence 0000 0000011123456679999999999999999998763
|
Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12 |
| >KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-22 Score=185.60 Aligned_cols=176 Identities=18% Similarity=0.231 Sum_probs=131.7
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeecc--------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCS-------- 493 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~-------- 493 (628)
.++|..++++|+|+||.|-.++- .+|+.+|+|++++.. .+....-..|-++|+..+||.+..+.-.+.
T Consensus 167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFV 246 (516)
T KOG0690|consen 167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFV 246 (516)
T ss_pred cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEE
Confidence 46788889999999999999885 679999999997542 334455677999999999998876533222
Q ss_pred -----CCCcc-----------------------------------------------------ccccccccccccCcccc
Q 037488 494 -----NDDFK-----------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 494 -----~~~~~-----------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+++.. +|||+++.-...+ ..
T Consensus 247 MeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g--~t 324 (516)
T KOG0690|consen 247 MEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYG--DT 324 (516)
T ss_pred EEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEeeecccchhccccc--ce
Confidence 11110 4999999754443 23
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
..++|||+.|+|||++....|+..+|.|.+|||+|||+.|+.||.....+. .+.-++..+
T Consensus 325 ~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~k-----------------LFeLIl~ed--- 384 (516)
T KOG0690|consen 325 TKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEK-----------------LFELILMED--- 384 (516)
T ss_pred eccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchhH-----------------HHHHHHhhh---
Confidence 467899999999999999999999999999999999999999996532221 111111111
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
...|...+++++.|+...+.+||.+|.-
T Consensus 385 -~kFPr~ls~eAktLLsGLL~kdP~kRLG 412 (516)
T KOG0690|consen 385 -LKFPRTLSPEAKTLLSGLLKKDPKKRLG 412 (516)
T ss_pred -ccCCccCCHHHHHHHHHHhhcChHhhcC
Confidence 1234456778999999999999999964
|
|
| >cd05122 PKc_STE Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-21 Score=190.10 Aligned_cols=180 Identities=27% Similarity=0.346 Sum_probs=131.9
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-------- 498 (628)
.|...+.||+|++|.||++.. .+++.+|+|++........+.+.+|++.+++++||||+++++++..+...
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~ 80 (253)
T cd05122 1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCS 80 (253)
T ss_pred CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCC
Confidence 467788999999999999987 47899999999765544567889999999999999999999876432210
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||.+........ ....
T Consensus 81 ~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~---~~~~ 157 (253)
T cd05122 81 GGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA---RNTM 157 (253)
T ss_pred CCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeecccccccccccc---ccce
Confidence 38888775533221 2345
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhc
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVI 599 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (628)
.|+..|+|||++.+..++.++|||||||++|+|++|+.||....... ............ ...
T Consensus 158 ~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~-----~~~~~~~~~~~~-------------~~~ 219 (253)
T cd05122 158 VGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMK-----ALFKIATNGPPG-------------LRN 219 (253)
T ss_pred ecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHH-----HHHHHHhcCCCC-------------cCc
Confidence 68999999999998889999999999999999999999986532111 000000000000 001
Q ss_pred hhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 600 KGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 600 ~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..++.++.+++.+||+.||++|||+.|+
T Consensus 220 ~~~~~~~~~~~i~~~l~~~p~~R~t~~~~ 248 (253)
T cd05122 220 PEKWSDEFKDFLKKCLQKNPEKRPTAEQL 248 (253)
T ss_pred ccccCHHHHHHHHHHccCChhhCCCHHHH
Confidence 11125568999999999999999998764
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core |
| >cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-21 Score=190.63 Aligned_cols=179 Identities=21% Similarity=0.331 Sum_probs=117.1
Q ss_pred ccccCCccEEEEEEecCC---cEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----------
Q 037488 434 LIDRGGIGYVYKRRIHYG---MEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----------- 498 (628)
Q Consensus 434 ~ig~G~~g~V~~~~~~~~---~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----------- 498 (628)
.||+|+||.||+|+..++ ..+++|.++... ....+.+.+|+.+++.++||||++++++|......
T Consensus 2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~ 81 (268)
T cd05086 2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD 81 (268)
T ss_pred cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence 589999999999975333 346677765432 33456799999999999999999999876543211
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||++...............
T Consensus 82 L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~ 161 (268)
T cd05086 82 LKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDK 161 (268)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEecccccccccCcchhhhcccCC
Confidence 389987643222111122345
Q ss_pred cccccccCcccccc-------CccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 520 LATIGYMAPEYGRE-------GRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 520 ~gt~~y~aPE~~~~-------~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
.|+..|+|||+..+ ..++.++|||||||++|||++ |..||..... ................++.
T Consensus 162 ~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~--- 233 (268)
T cd05086 162 CVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSD-----REVLNHVIKDQQVKLFKPQ--- 233 (268)
T ss_pred cCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHhhcccccCCCc---
Confidence 68999999998753 246789999999999999997 5778754321 1111111111111111111
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+...+..+.+++.+|| .+|++||+++||
T Consensus 234 -------~~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i 262 (268)
T cd05086 234 -------LELPYSERWYEVLQFCW-LSPEKRATAEEV 262 (268)
T ss_pred -------cCCCCcHHHHHHHHHHh-hCcccCCCHHHH
Confidence 11123456889999999 679999999874
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage |
| >cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-21 Score=190.13 Aligned_cols=183 Identities=25% Similarity=0.314 Sum_probs=135.0
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCC--Ccc----
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSND--DFK---- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~---- 498 (628)
+|...+.||+|++|.||+|.. .+++.||+|++.... ....+.+.+|++++++++||||+++++++... ...
T Consensus 1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~ 80 (260)
T cd06606 1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL 80 (260)
T ss_pred CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence 467788999999999999987 479999999987644 24567789999999999999999999887655 211
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||.+............
T Consensus 81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~ 160 (260)
T cd06606 81 EYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGT 160 (260)
T ss_pred EecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEecccccccccc
Confidence 388888765433211112
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
....++..|+|||...+..++.++||||+||++|+|++|+.||.... ........ ... ....
T Consensus 161 ~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~----~~~~~~~~--------~~~------~~~~ 222 (260)
T cd06606 161 GSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELG----NPMAALYK--------IGS------SGEP 222 (260)
T ss_pred cCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC----chHHHHHh--------ccc------cCCC
Confidence 34568999999999998889999999999999999999999997532 11111110 000 0011
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+...+.++.+++.+|++.||++||++.|+
T Consensus 223 ~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~l 254 (260)
T cd06606 223 PEIPEHLSEEAKDFLRKCLRRDPKKRPTADEL 254 (260)
T ss_pred cCCCcccCHHHHHHHHHhCcCChhhCCCHHHH
Confidence 12233446679999999999999999998764
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK |
| >cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.3e-22 Score=202.11 Aligned_cols=198 Identities=21% Similarity=0.209 Sum_probs=132.3
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc---
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--- 497 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--- 497 (628)
...++|.....||+|+||.||+|+. .+++.||||++... .....+.+.+|+.++++++||||+++++++..++.
T Consensus 12 ~~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 91 (343)
T cd07851 12 EVPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLED 91 (343)
T ss_pred cccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccc
Confidence 3467899999999999999999987 56889999998643 23344667889999999999999998876543221
Q ss_pred ---c----------------------------------------------------------------cccccccccccc
Q 037488 498 ---K----------------------------------------------------------------ADFGMAKPLLKE 510 (628)
Q Consensus 498 ---~----------------------------------------------------------------~DFGla~~~~~~ 510 (628)
. +|||+++.....
T Consensus 92 ~~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~ 171 (343)
T cd07851 92 FQDVYLVTHLMGADLNNIVKCQKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDDE 171 (343)
T ss_pred cccEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEcccccccccccc
Confidence 0 388888754322
Q ss_pred CcccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccce------
Q 037488 511 DQSLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMK------ 583 (628)
Q Consensus 511 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~------ 583 (628)
.....+|..|+|||++.+ ..++.++||||+||++|||++|+.||...... ..+...... .+.....
T Consensus 172 -----~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~-~~~~~i~~~-~~~~~~~~~~~~~ 244 (343)
T cd07851 172 -----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHI-DQLKRIMNL-VGTPDEELLQKIS 244 (343)
T ss_pred -----ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHHh-cCCCCHHHHhhcc
Confidence 234568999999999865 36789999999999999999999999643211 111111100 0000000
Q ss_pred ------eecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 584 ------VVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 584 ------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+..................+.++.+++.+||+.||++|||+.||
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~el 295 (343)
T cd07851 245 SESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEA 295 (343)
T ss_pred chhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHH
Confidence 000000000000001112246779999999999999999998764
|
Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK |
| >cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=193.33 Aligned_cols=182 Identities=24% Similarity=0.415 Sum_probs=129.0
Q ss_pred cCCCcccccccCCccEEEEEEec------CCcEEEEEEeeccchh-HHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQYRE-AFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
.+|+....||+|+||.||+|+.. +.+.||+|.+...... ....+.+|++++++++||||+++++++.+.+..
T Consensus 5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 84 (275)
T cd05046 5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY 84 (275)
T ss_pred HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce
Confidence 57888899999999999999853 3467999998654433 456789999999999999999999887542210
Q ss_pred --------------------------------------------------------------------------cccccc
Q 037488 499 --------------------------------------------------------------------------ADFGMA 504 (628)
Q Consensus 499 --------------------------------------------------------------------------~DFGla 504 (628)
+|||++
T Consensus 85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~~~~~~ 164 (275)
T cd05046 85 MILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLS 164 (275)
T ss_pred EEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEEcccccc
Confidence 266666
Q ss_pred ccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccce
Q 037488 505 KPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMK 583 (628)
Q Consensus 505 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (628)
+...... ........++..|+|||.+.+..++.++|||||||++|||++ |..||....... .........
T Consensus 165 ~~~~~~~-~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~~-----~~~~~~~~~--- 235 (275)
T cd05046 165 KDVYNSE-YYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEE-----VLNRLQAGK--- 235 (275)
T ss_pred cccCccc-ccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccchHH-----HHHHHHcCC---
Confidence 5432211 111223457788999999988889999999999999999999 788986432111 111100000
Q ss_pred eecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 584 VVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.|+
T Consensus 236 -----------~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~ 269 (275)
T cd05046 236 -----------LELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSEL 269 (275)
T ss_pred -----------cCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHH
Confidence 0011122456679999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s |
| >cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-21 Score=195.99 Aligned_cols=199 Identities=21% Similarity=0.184 Sum_probs=129.3
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhccc-CCCcceeeeeccCCCc-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIR-HRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~----- 497 (628)
++|+..+.||+|+||.||+|.. .+|+.||||+++... ......+.+|+.++++++ ||||+++++++...+.
T Consensus 1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~ 80 (295)
T cd07837 1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS 80 (295)
T ss_pred CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence 4688889999999999999987 579999999986532 223456788999999995 6999999886543221
Q ss_pred -c----------------------------------------------------------------------cccccccc
Q 037488 498 -K----------------------------------------------------------------------ADFGMAKP 506 (628)
Q Consensus 498 -~----------------------------------------------------------------------~DFGla~~ 506 (628)
. +|||+++.
T Consensus 81 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~ 160 (295)
T cd07837 81 LYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRA 160 (295)
T ss_pred EEEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeeccccee
Confidence 0 38888775
Q ss_pred ccccCcccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhc-CC--ccc
Q 037488 507 LLKEDQSLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL-PI--SVM 582 (628)
Q Consensus 507 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~-~~--~~~ 582 (628)
...... ......+++.|+|||++.+ ..++.++|||||||++|||++|+.||....... .......... +. .+.
T Consensus 161 ~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 237 (295)
T cd07837 161 FSIPVK--SYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQ-QLLHIFKLLGTPTEQVWP 237 (295)
T ss_pred cCCCcc--ccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHH-HHHHHHHHhCCCChhhCc
Confidence 432211 1123467889999998865 457999999999999999999999996532111 1111111000 00 000
Q ss_pred eeecc---cccCCc--ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 583 KVVDA---HLLSQE--DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 583 ~~~~~---~~~~~~--~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..... ...... .......+..+.++.+++.+||+.||++||++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~ei 288 (295)
T cd07837 238 GVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAA 288 (295)
T ss_pred chhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHH
Confidence 00000 000000 00000112356779999999999999999998764
|
Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-21 Score=211.33 Aligned_cols=247 Identities=28% Similarity=0.378 Sum_probs=137.4
Q ss_pred CCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCC
Q 037488 33 QNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYL 112 (628)
Q Consensus 33 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L 112 (628)
.+...|+++++.++. +|..+ .++|+.|+|++|+++.+....+ .+|+.|++++|+++.++..+ ..+|
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l--------~~~L 243 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI--PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATL--------PDTI 243 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhh--------hccc
Confidence 456778888887774 45433 3568888888888886544332 47888888888887665321 2367
Q ss_pred cEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeeccc
Q 037488 113 KYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEY 192 (628)
Q Consensus 113 ~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 192 (628)
+.|+|++|.+.. +|..+. ..|+.|++++|++.. +|..+. .+|+.|++++|++++ +|..+. ++|+.|++++
T Consensus 244 ~~L~Ls~N~L~~-LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 244 QEMELSINRITE-LPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQS 313 (754)
T ss_pred cEEECcCCccCc-CChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcC
Confidence 888888888773 344332 346666666666653 444332 356666666666653 333222 3556666666
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCC
Q 037488 193 NQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPL 272 (628)
Q Consensus 193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 272 (628)
|++.. +|..+ .++|+.|++++|.++. +|..+. ++|+.|++++|+|+.+|..+. ++|++|++++|.++.. |.
T Consensus 314 N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~L-P~ 384 (754)
T PRK15370 314 NSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNL-PE 384 (754)
T ss_pred Ccccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCC-CH
Confidence 66653 33322 1456666666666554 333332 456666666666665554432 4555666666655532 22
Q ss_pred cccCCccccEEEcCCCcCCCCCccc----cCCCCCCCEEeCCCCcCc
Q 037488 273 EIGNLKVLIKIDLSMNNFSGVIPIT----IGYLKDLQYLFLEYNRLQ 315 (628)
Q Consensus 273 ~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~l~~n~~~ 315 (628)
.+. ..|+.|++++|+++. +|.. .+.++.+..|++.+|++.
T Consensus 385 ~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 385 NLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 222 245555555555552 2322 222344555555555554
|
|
| >cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-21 Score=199.52 Aligned_cols=199 Identities=21% Similarity=0.220 Sum_probs=134.7
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCC-----cc-
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDD-----FK- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-----~~- 498 (628)
+|...+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|+++++.++||||+++++++...+ ..
T Consensus 1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~ 80 (330)
T cd07834 1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY 80 (330)
T ss_pred CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence 477889999999999999987 458999999987533 344567899999999999999999998775543 00
Q ss_pred ----------------------------------------------------------------ccccccccccccCcc-
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQS- 513 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~- 513 (628)
+|||++.........
T Consensus 81 lv~e~~~~~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~ 160 (330)
T cd07834 81 IVTELMETDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEK 160 (330)
T ss_pred EEecchhhhHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEeeccccccc
Confidence 389988865433210
Q ss_pred cccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc----c-------
Q 037488 514 LIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS----V------- 581 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~----~------- 581 (628)
.......||..|+|||++.+. .++.++||||+||++|+|++|++||....... ............ .
T Consensus 161 ~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~ 238 (330)
T cd07834 161 GFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYID--QLNLIVEVLGTPSEEDLKFITSEK 238 (330)
T ss_pred ccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHH--HHHHHHHhcCCCChhHhhhccccc
Confidence 112345689999999999887 78999999999999999999999997543211 001111100000 0
Q ss_pred -ceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 582 -MKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 582 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..................+.++.+++.+||+.+|++|||+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~l 286 (330)
T cd07834 239 ARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEA 286 (330)
T ss_pred hhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHH
Confidence 00000000000000001112346779999999999999999998764
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and |
| >KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.7e-23 Score=184.69 Aligned_cols=183 Identities=21% Similarity=0.245 Sum_probs=126.4
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCC-Cc------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHI-RHRNLIKIISSCSND-DF------ 497 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~-~~------ 497 (628)
+.+....||.|+||+|+|-.. +.|+.+|||++.... ....+++..|.++..+- +-||||+++|.+-.+ +.
T Consensus 65 ~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMEL 144 (361)
T KOG1006|consen 65 NLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMEL 144 (361)
T ss_pred hHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHH
Confidence 344567899999999999665 789999999997643 34456788888765554 789999999976432 11
Q ss_pred ----------------------------------------------------------------cccccccccccccCcc
Q 037488 498 ----------------------------------------------------------------KADFGMAKPLLKEDQS 513 (628)
Q Consensus 498 ----------------------------------------------------------------~~DFGla~~~~~~~~~ 513 (628)
.||||++..+...
T Consensus 145 Md~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~S--- 221 (361)
T KOG1006|consen 145 MDISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDS--- 221 (361)
T ss_pred HhhhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEecCCCEeeecccchHhHHHH---
Confidence 0699999876433
Q ss_pred cccccccccccccCcccccc--CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 514 LIQTQTLATIGYMAPEYGRE--GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~--~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
...+..+|...|||||.+.. ..|+.++||||+|+.|||++||+.||..-.. .+.+.......+. +++..
T Consensus 222 iAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~s---vfeql~~Vv~gdp------p~l~~ 292 (361)
T KOG1006|consen 222 IAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDS---VFEQLCQVVIGDP------PILLF 292 (361)
T ss_pred HHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHH---HHHHHHHHHcCCC------CeecC
Confidence 22345679999999999864 3499999999999999999999999965211 1111111111110 01100
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
.. .--..+..+..++..|+.+|-+.||...+
T Consensus 293 ~~-----~~~~~s~~~~~fintCl~Kd~~~Rpky~~ 323 (361)
T KOG1006|consen 293 DK-----ECVHYSFSMVRFINTCLIKDRSDRPKYDD 323 (361)
T ss_pred cc-----cccccCHHHHHHHHHHhhcccccCcchhh
Confidence 00 00123455899999999999999998765
|
|
| >cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-21 Score=188.89 Aligned_cols=171 Identities=22% Similarity=0.262 Sum_probs=125.3
Q ss_pred cccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------------
Q 037488 435 IDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------------ 498 (628)
Q Consensus 435 ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------------ 498 (628)
||+|+||.||+|+. .+++.||+|++.... ....+.+.+|+++++.++||||+++++++.++...
T Consensus 1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L 80 (262)
T cd05572 1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL 80 (262)
T ss_pred CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence 69999999999997 568999999996532 23456789999999999999999999887543321
Q ss_pred ------------------------------------------------------ccccccccccccCccccccccccccc
Q 037488 499 ------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLATIG 524 (628)
Q Consensus 499 ------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt~~ 524 (628)
+|||+++...... ......|+..
T Consensus 81 ~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~---~~~~~~~~~~ 157 (262)
T cd05572 81 WTILRDRGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ---KTWTFCGTPE 157 (262)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCccc---ccccccCCcC
Confidence 3888887653321 1123468999
Q ss_pred ccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhH
Q 037488 525 YMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCV 604 (628)
Q Consensus 525 y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (628)
|+|||++.+..++.++||||+||++|||++|+.||.....+ .......... .......+..++
T Consensus 158 ~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---~~~~~~~~~~--------------~~~~~~~~~~~~ 220 (262)
T cd05572 158 YVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDED---PMEIYNDILK--------------GNGKLEFPNYID 220 (262)
T ss_pred ccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCC---HHHHHHHHhc--------------cCCCCCCCcccC
Confidence 99999998888999999999999999999999999754321 1111111110 000111222335
Q ss_pred HHHHHHhhcccCCCcccCCCC
Q 037488 605 SFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 605 ~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
.++.+++.+||+.||++||++
T Consensus 221 ~~~~~~i~~~l~~~p~~R~~~ 241 (262)
T cd05572 221 KAAKDLIKQLLRRNPEERLGN 241 (262)
T ss_pred HHHHHHHHHHccCChhhCcCC
Confidence 679999999999999999993
|
Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi |
| >cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-21 Score=189.32 Aligned_cols=172 Identities=21% Similarity=0.268 Sum_probs=119.3
Q ss_pred cccccCCccEEEEEEe-cCCcEEEEEEeeccch---hHHHHHHHHHHHh-hcccCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR---EAFKNFDIECDMM-KHIRHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||.||+|.. .+|+.||||++..... .....+..|..++ ...+||||+++++++..++..
T Consensus 2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~ 81 (260)
T cd05611 2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG 81 (260)
T ss_pred ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence 5689999999999987 5689999999865321 2223345555544 455899999999887543211
Q ss_pred ---------------------------------------------------------ccccccccccccCcccccccccc
Q 037488 499 ---------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLA 521 (628)
Q Consensus 499 ---------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~g 521 (628)
+|||+++.... .....|
T Consensus 82 ~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~------~~~~~~ 155 (260)
T cd05611 82 GDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE------NKKFVG 155 (260)
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeecccceeccc------cccCCC
Confidence 38888775322 133568
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchh
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG 601 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (628)
+..|+|||+..+..++.++||||+||++|||++|+.||...... ........ ...........
T Consensus 156 ~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-----~~~~~~~~------------~~~~~~~~~~~ 218 (260)
T cd05611 156 TPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPD-----AVFDNILS------------RRINWPEEVKE 218 (260)
T ss_pred CcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHH-----HHHHHHHh------------cccCCCCcccc
Confidence 99999999998888999999999999999999999999653221 11110000 00000011112
Q ss_pred hhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 602 QCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 602 ~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
.++..+.+++.+||+.||++||++.+
T Consensus 219 ~~~~~~~~~i~~~l~~~p~~R~~~~~ 244 (260)
T cd05611 219 FCSPEAVDLINRLLCMDPAKRLGANG 244 (260)
T ss_pred cCCHHHHHHHHHHccCCHHHccCCCc
Confidence 34667999999999999999998753
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do |
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-22 Score=213.81 Aligned_cols=70 Identities=27% Similarity=0.411 Sum_probs=58.4
Q ss_pred HHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeec
Q 037488 423 FQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSC 492 (628)
Q Consensus 423 ~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~ 492 (628)
.+-..+|+..+.+|+||||.||+++. -+|+.+|||+|... .......+.+|++++++++|||||+.+...
T Consensus 475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAW 546 (1351)
T KOG1035|consen 475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAW 546 (1351)
T ss_pred hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhh
Confidence 34457788999999999999999986 57999999999654 333456688999999999999999987643
|
|
| >KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-21 Score=185.29 Aligned_cols=178 Identities=25% Similarity=0.339 Sum_probs=129.6
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeee------------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISS------------ 491 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~------------ 491 (628)
.|...+.+|.|.-|+||.++. .++..+|+|++++.. .....++..|-+||+.++||.+..|++.
T Consensus 78 ~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~me 157 (459)
T KOG0610|consen 78 HFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVME 157 (459)
T ss_pred HHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEe
Confidence 345568899999999999998 457899999998643 3345567789999999999999998764
Q ss_pred -ccCCCcc-------------------------------------------------------ccccccccccc------
Q 037488 492 -CSNDDFK-------------------------------------------------------ADFGMAKPLLK------ 509 (628)
Q Consensus 492 -~~~~~~~-------------------------------------------------------~DFGla~~~~~------ 509 (628)
|.+++.. +||.++.....
T Consensus 158 yCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~ 237 (459)
T KOG0610|consen 158 YCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLVK 237 (459)
T ss_pred cCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeeccccccCCCCCeeec
Confidence 4444432 26666643210
Q ss_pred ------------------------------------------------cCcccccccccccccccCccccccCccCcccc
Q 037488 510 ------------------------------------------------EDQSLIQTQTLATIGYMAPEYGREGRVSTNGD 541 (628)
Q Consensus 510 ------------------------------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D 541 (628)
......+.+++||-.|+|||++.|...+.++|
T Consensus 238 s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVD 317 (459)
T KOG0610|consen 238 SSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVD 317 (459)
T ss_pred cCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCCchhh
Confidence 00012234568999999999999999999999
Q ss_pred hhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCccc
Q 037488 542 VYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEE 621 (628)
Q Consensus 542 VwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~ 621 (628)
.|+|||++|||+.|+.||.+... ..++...+.. .+ .++.....+.+++|||.+.|.+||.+
T Consensus 318 WWtfGIflYEmLyG~TPFKG~~~-~~Tl~NIv~~------------~l------~Fp~~~~vs~~akDLIr~LLvKdP~k 378 (459)
T KOG0610|consen 318 WWTFGIFLYEMLYGTTPFKGSNN-KETLRNIVGQ------------PL------KFPEEPEVSSAAKDLIRKLLVKDPSK 378 (459)
T ss_pred HHHHHHHHHHHHhCCCCcCCCCc-hhhHHHHhcC------------CC------cCCCCCcchhHHHHHHHHHhccChhh
Confidence 99999999999999999976432 2333332211 11 11111245678999999999999999
Q ss_pred CCC
Q 037488 622 RVN 624 (628)
Q Consensus 622 Rpt 624 (628)
|.-
T Consensus 379 Rlg 381 (459)
T KOG0610|consen 379 RLG 381 (459)
T ss_pred hhc
Confidence 986
|
|
| >KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-22 Score=195.55 Aligned_cols=185 Identities=24% Similarity=0.349 Sum_probs=131.3
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeec--cc-----hhHHHHHHHHHHHhhcccCCCcceeeeecc-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDL--QY-----REAFKNFDIECDMMKHIRHRNLIKIISSCS----- 493 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~--~~-----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~----- 493 (628)
++|-.+..+|+|||+.||+|.+ ...+.||||+-.. .. ....+.+++|-+|.+.++||.||++++|+.
T Consensus 463 ~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtds 542 (775)
T KOG1151|consen 463 DRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDS 542 (775)
T ss_pred HHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeecccc
Confidence 4566678999999999999986 5578899998532 11 223567899999999999999999988653
Q ss_pred ---------CCCcc----------------------------------------------------------cccccccc
Q 037488 494 ---------NDDFK----------------------------------------------------------ADFGMAKP 506 (628)
Q Consensus 494 ---------~~~~~----------------------------------------------------------~DFGla~~ 506 (628)
+.+.. .|||+++.
T Consensus 543 FCTVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKI 622 (775)
T KOG1151|consen 543 FCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKI 622 (775)
T ss_pred ceeeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchhhh
Confidence 22211 29999998
Q ss_pred ccccCc-----ccccccccccccccCccccccC----ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhc
Q 037488 507 LLKEDQ-----SLIQTQTLATIGYMAPEYGREG----RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL 577 (628)
Q Consensus 507 ~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~----~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~ 577 (628)
+..+.. ...+....||.||++||.+.-+ +++.|+||||.|||+|..+.|+.||.........+ ..
T Consensus 623 MdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdIL-qe----- 696 (775)
T KOG1151|consen 623 MDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDIL-QE----- 696 (775)
T ss_pred ccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHHHH-hh-----
Confidence 765432 2234456799999999987643 37999999999999999999999997532211111 00
Q ss_pred CCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 578 PISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
..+....+..++..+.++++++++|.+||++--++|....
T Consensus 697 ---------NTIlkAtEVqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~ 736 (775)
T KOG1151|consen 697 ---------NTILKATEVQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQ 736 (775)
T ss_pred ---------hchhcceeccCCCCCccCHHHHHHHHHHHHhhhhhhhhHH
Confidence 0111112223334445678899999999999888886543
|
|
| >cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-21 Score=190.33 Aligned_cols=177 Identities=22% Similarity=0.244 Sum_probs=130.2
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
+|+..+.||+|+||.||++.. .+++.+|+|++.... ......+.+|++++++++||||+++++++.++...
T Consensus 1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~ 80 (256)
T cd08530 1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY 80 (256)
T ss_pred CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence 477888999999999999976 578999999987532 33455678999999999999999998765432211
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+++.....
T Consensus 81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~---- 156 (256)
T cd08530 81 APFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKKN---- 156 (256)
T ss_pred cCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhhhccC----
Confidence 378877754332
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
......|+..|+|||++.+..++.++||||+|+++|||++|+.||..... ......... ..
T Consensus 157 ~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~-----~~~~~~~~~------------~~-- 217 (256)
T cd08530 157 MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSM-----QDLRYKVQR------------GK-- 217 (256)
T ss_pred CcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHhc------------CC--
Confidence 12234689999999999998999999999999999999999999965321 111111000 00
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+...+.++.+++.+||+.+|++|||+.|+
T Consensus 218 -~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~ 250 (256)
T cd08530 218 -YPPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKI 250 (256)
T ss_pred -CCCCchhhCHHHHHHHHHHcCCCcccCCCHHHH
Confidence 011122346679999999999999999998764
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an |
| >cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-21 Score=188.74 Aligned_cols=179 Identities=30% Similarity=0.422 Sum_probs=132.3
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch--hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR--EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
+|+..+.||+|++|.||+|+. .+++.||+|.+..... .....+.+|++++++++|||++++++++..+...
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~ 80 (254)
T cd06627 1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY 80 (254)
T ss_pred CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEec
Confidence 477788999999999999987 4688999999976543 4567789999999999999999999876543211
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+++........ ...
T Consensus 81 ~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~--~~~ 158 (254)
T cd06627 81 AENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKD--DAS 158 (254)
T ss_pred CCCCcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEeccccceecCCCccc--ccc
Confidence 388888765332211 233
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
..|+..|+|||...+..++.++||||+|+++|||++|+.||..... ........ . .....
T Consensus 159 ~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~----~~~~~~~~-~---------------~~~~~ 218 (254)
T cd06627 159 VVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNP----MAALFRIV-Q---------------DDHPP 218 (254)
T ss_pred cccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccH----HHHHHHHh-c---------------cCCCC
Confidence 4689999999999888899999999999999999999999864321 11111100 0 00111
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+...+.++.+++.+||..+|++|||+.|+
T Consensus 219 ~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~ 248 (254)
T cd06627 219 LPEGISPELKDFLMQCFQKDPNLRPTAKQL 248 (254)
T ss_pred CCCCCCHHHHHHHHHHHhCChhhCcCHHHH
Confidence 222345678999999999999999998764
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast |
| >cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-21 Score=191.14 Aligned_cols=195 Identities=18% Similarity=0.186 Sum_probs=127.0
Q ss_pred CCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch-hHHHHHHHHHHHhhccc-CCCcceeeeeccCCCcc-------
Q 037488 429 FSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR-EAFKNFDIECDMMKHIR-HRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~------- 498 (628)
|...+.||+|+||.||+|.. .+++.||||++..... .......+|+..+++++ ||||+++++++..++..
T Consensus 1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~ 80 (283)
T cd07830 1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM 80 (283)
T ss_pred CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence 56678899999999999997 4588999999865322 22234567999999999 99999998876543211
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+++....... ...
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~---~~~ 157 (283)
T cd07830 81 EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPP---YTD 157 (283)
T ss_pred CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccceeccCCCC---cCC
Confidence 38988876533221 234
Q ss_pred ccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc----------cceeecc
Q 037488 519 TLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS----------VMKVVDA 587 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 587 (628)
..|+..|+|||++.+ ..++.++|||||||++|||++|++||......+. ........... .....+.
T Consensus 158 ~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (283)
T cd07830 158 YVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQ--LYKICSVLGTPTKQDWPEGYKLASKLGF 235 (283)
T ss_pred CCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHH--HHHHHHhcCCCChhhhhhHhhhhccccc
Confidence 568999999998754 4589999999999999999999999865322111 00000000000 0000000
Q ss_pred cccCCc-ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLSQE-DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~~~-~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...... ..........+.++.+++.+||+.||++|||+.|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei 277 (283)
T cd07830 236 RFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQA 277 (283)
T ss_pred cccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHH
Confidence 000000 00001111225679999999999999999998764
|
Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili |
| >cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-21 Score=194.80 Aligned_cols=195 Identities=20% Similarity=0.302 Sum_probs=121.1
Q ss_pred cccccC--CccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRG--GIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G--~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--------- 498 (628)
..||.| +||+||+|+. .+|+.||+|+++... ....+.+.+|+.+++.++||||++++++|..++..
T Consensus 4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~ 83 (328)
T cd08226 4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY 83 (328)
T ss_pred HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence 356666 8999999987 679999999987532 33457788999999999999999999988654321
Q ss_pred -----------------------------------------------------------ccccccccccccCccc-----
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSL----- 514 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~----- 514 (628)
+|||.+..........
T Consensus 84 ~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (328)
T cd08226 84 GSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYD 163 (328)
T ss_pred CCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCcccccccc
Confidence 1333221111100000
Q ss_pred ccccccccccccCccccccC--ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcc---------ce
Q 037488 515 IQTQTLATIGYMAPEYGREG--RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISV---------MK 583 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~--~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~---------~~ 583 (628)
......++..|||||++.+. .++.++|||||||++|||++|+.||......... ............ ..
T Consensus 164 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 242 (328)
T cd08226 164 FPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQML-LQKLKGPPYSPLDITTFPCEESR 242 (328)
T ss_pred ccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHH-HHHhcCCCCCCccccccchhhhh
Confidence 00112356679999999764 4789999999999999999999999754321111 110000000000 00
Q ss_pred -----------eecccc-------cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 584 -----------VVDAHL-------LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 584 -----------~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.+... ..........+..++.++++++.+||+.||++|||+.|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~ 305 (328)
T cd08226 243 MKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSL 305 (328)
T ss_pred hccchhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHH
Confidence 000000 000001112233467789999999999999999999874
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig |
| >cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-21 Score=188.85 Aligned_cols=179 Identities=26% Similarity=0.294 Sum_probs=132.4
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
+|...+.||.|+||.||++.. .+++.||+|++.... ....+.+.+|++++++++|||++++++.+..++..
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~ 80 (258)
T cd08215 1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY 80 (258)
T ss_pred CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence 477888999999999999987 568999999997643 24566788999999999999999988754332110
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||++....... .
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~--~ 158 (258)
T cd08215 81 ADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTV--D 158 (258)
T ss_pred cCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceeecccCc--c
Confidence 3888887653332 1
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
......|++.|+|||...+..++.++||||+|+++|+|++|+.||.... ............
T Consensus 159 ~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~-----~~~~~~~~~~~~-------------- 219 (258)
T cd08215 159 LAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGEN-----LLELALKILKGQ-------------- 219 (258)
T ss_pred eecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCc-----HHHHHHHHhcCC--------------
Confidence 2234568999999999988889999999999999999999999986532 111111111100
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++.+++.+||..+|++|||+.|+
T Consensus 220 -~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l 252 (258)
T cd08215 220 -YPPIPSQYSSELRNLVSSLLQKDPEERPSIAQI 252 (258)
T ss_pred -CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 011222445679999999999999999998764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They |
| >KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.8e-22 Score=181.44 Aligned_cols=184 Identities=18% Similarity=0.129 Sum_probs=140.8
Q ss_pred HhhcCCCcc-cccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCC-----
Q 037488 424 QATNGFSEN-NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSND----- 495 (628)
Q Consensus 424 ~~~~~~~~~-~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~----- 495 (628)
..+++|.+. ++||-|-.|.|-.+.. .+|+.+|+|++.. ...+.+||++.-.. .|||||+++++|.+.
T Consensus 58 ~itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~D-----s~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rk 132 (400)
T KOG0604|consen 58 SITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLD-----SPKARREVELHWMASGHPHIVSIIDVYENSYQGRK 132 (400)
T ss_pred cchhhheehhhhhccccCCceEEEEeccchhhhHHHHHhc-----CHHHHhHhhhhhhhcCCCceEEeehhhhhhccCce
Confidence 456777764 5899999999999875 6799999999842 23356799877666 599999999987531
Q ss_pred ------------Ccc----------------------------------------------------------ccccccc
Q 037488 496 ------------DFK----------------------------------------------------------ADFGMAK 505 (628)
Q Consensus 496 ------------~~~----------------------------------------------------------~DFGla~ 505 (628)
+.. +|||+|+
T Consensus 133 cLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK 212 (400)
T KOG0604|consen 133 CLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAK 212 (400)
T ss_pred eeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEeccccccc
Confidence 000 3999999
Q ss_pred cccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceee
Q 037488 506 PLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVV 585 (628)
Q Consensus 506 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (628)
.-... ....+.+-|++|.|||++...+|+..+|+||+||++|-|+.|-+||-...... ..+. +-
T Consensus 213 ~t~~~---~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~a-ispg------------Mk 276 (400)
T KOG0604|consen 213 ETQEP---GDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA-ISPG------------MK 276 (400)
T ss_pred ccCCC---ccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCcc-CChh------------HH
Confidence 64322 23467789999999999999999999999999999999999999996532211 1010 11
Q ss_pred cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+..+.+++..+.|.+.+.+++++|++.|..+|.+|.|+.|+
T Consensus 277 ~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~ 319 (400)
T KOG0604|consen 277 RRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEV 319 (400)
T ss_pred hHhhccCccCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHh
Confidence 2234456667777888999999999999999999999998764
|
|
| >cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-21 Score=195.19 Aligned_cols=199 Identities=20% Similarity=0.175 Sum_probs=128.1
Q ss_pred CCCcccccccCCccEEEEEEe-cC--CcEEEEEEeecc--chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCC--C---
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HY--GMEVAVKVFDLQ--YREAFKNFDIECDMMKHI-RHRNLIKIISSCSND--D--- 496 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~--~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~--~--- 496 (628)
+|...+.||+|+||.||+++. .+ ++.||+|++... .....+.+.+|+++++++ +||||+++++++... .
T Consensus 1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~ 80 (332)
T cd07857 1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE 80 (332)
T ss_pred CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence 477788999999999999987 44 789999998643 222346678899999999 599999998753211 0
Q ss_pred c----------------------------------------------------------------cccccccccccccCc
Q 037488 497 F----------------------------------------------------------------KADFGMAKPLLKEDQ 512 (628)
Q Consensus 497 ~----------------------------------------------------------------~~DFGla~~~~~~~~ 512 (628)
. .+|||+|+.......
T Consensus 81 ~~~~~e~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~ 160 (332)
T cd07857 81 LYLYEELMEADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPG 160 (332)
T ss_pred EEEEEecccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCceecccccc
Confidence 0 039999986543211
Q ss_pred c--cccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcc----ceee
Q 037488 513 S--LIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISV----MKVV 585 (628)
Q Consensus 513 ~--~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 585 (628)
. .......||..|+|||+..+ ..++.++||||+||++|+|++|++||...... .............. ..+.
T Consensus 161 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 238 (332)
T cd07857 161 ENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYV--DQLNQILQVLGTPDEETLSRIG 238 (332)
T ss_pred cccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHH--HHHHHHHHHhCCCCHHHHHhhh
Confidence 1 11233579999999998766 46899999999999999999999998653211 11110000000000 0000
Q ss_pred cc-------cccCCccc-chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 DA-------HLLSQEDK-HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ~~-------~~~~~~~~-~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+ ........ .......++.++.+++.+|++.||++|||+.|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~l 289 (332)
T cd07857 239 SPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEA 289 (332)
T ss_pred hhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHH
Confidence 00 00000000 001112245679999999999999999998763
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co |
| >cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11 | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-21 Score=189.51 Aligned_cols=179 Identities=19% Similarity=0.221 Sum_probs=125.3
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc-----chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ-----YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
+|...+.||+|+||.||+++. ..+..+++|.++.. .......+.+|+.++++++||||+++++++.+++..
T Consensus 1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 80 (260)
T cd08222 1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII 80 (260)
T ss_pred CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence 477788999999999999986 34555666665431 122334577899999999999999988765432211
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+++......
T Consensus 81 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~~~~~~l~d~g~~~~~~~~~- 159 (260)
T cd08222 81 TEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLKNNLLKIGDFGVSRLLMGSC- 159 (260)
T ss_pred EEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEeecCCEeecccCceeecCCCc-
Confidence 3888877653322
Q ss_pred ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 513 SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.......|+..|+|||...+..++.++||||||+++|+|++|+.||.... .. ........ .
T Consensus 160 -~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~----~~-~~~~~~~~------------~- 220 (260)
T cd08222 160 -DLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQN----FL-SVVLRIVE------------G- 220 (260)
T ss_pred -ccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCcc----HH-HHHHHHHc------------C-
Confidence 12234568999999999988889999999999999999999999985421 11 11111000 0
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+..+..++.++.+++.+||..||++||++.|+
T Consensus 221 --~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i 254 (260)
T cd08222 221 --PTPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEI 254 (260)
T ss_pred --CCCCCcchhcHHHHHHHHHHhcCChhhCcCHHHH
Confidence 0111223456679999999999999999998764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check |
| >PHA03390 pk1 serine/threonine-protein kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-20 Score=183.81 Aligned_cols=179 Identities=18% Similarity=0.158 Sum_probs=122.9
Q ss_pred HHHHhhcCCCccccc--ccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCC
Q 037488 421 ELFQATNGFSENNLI--DRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDD 496 (628)
Q Consensus 421 ~l~~~~~~~~~~~~i--g~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 496 (628)
+.....+.|...+.+ |+|+||.||+++. .+++.+|+|.+........ |+.....+ +||||+++++++..++
T Consensus 8 ~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-----e~~~~~~~~~h~~iv~~~~~~~~~~ 82 (267)
T PHA03390 8 ELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAI-----EPMVHQLMKDNPNFIKLYYSVTTLK 82 (267)
T ss_pred HHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchh-----hHHHHHHhhcCCCEEEEEEEEecCC
Confidence 344445677776666 9999999999986 6788999999865322111 22222222 6999999998765432
Q ss_pred cc-------------------------------------------------------------------ccccccccccc
Q 037488 497 FK-------------------------------------------------------------------ADFGMAKPLLK 509 (628)
Q Consensus 497 ~~-------------------------------------------------------------------~DFGla~~~~~ 509 (628)
.. +|||+++....
T Consensus 83 ~~~iv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~ 162 (267)
T PHA03390 83 GHVLIMDYIKDGDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGT 162 (267)
T ss_pred eeEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccceecCC
Confidence 11 37887765422
Q ss_pred cCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccc
Q 037488 510 EDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589 (628)
Q Consensus 510 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (628)
. ....|+..|+|||++.+..++.++||||+||++|||++|+.||............+.... .
T Consensus 163 ~------~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-~----------- 224 (267)
T PHA03390 163 P------SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQ-Q----------- 224 (267)
T ss_pred C------ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhh-c-----------
Confidence 1 234689999999999998999999999999999999999999975433322222222211 0
Q ss_pred cCCcccchhchhhhHHHHHHHhhcccCCCcccCCC-CCC
Q 037488 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVN-AKE 627 (628)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt-~~e 627 (628)
.....+...+..+++++.+||+.||.+||+ ++|
T Consensus 225 -----~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~ 258 (267)
T PHA03390 225 -----KKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNE 258 (267)
T ss_pred -----ccCCcccccCHHHHHHHHHHhccChhhCCchHHH
Confidence 001112234667999999999999999996 455
|
|
| >cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.4e-21 Score=187.35 Aligned_cols=173 Identities=23% Similarity=0.263 Sum_probs=123.3
Q ss_pred cccCCccEEEEEEec-CCcEEEEEEeeccch---hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------------
Q 037488 435 IDRGGIGYVYKRRIH-YGMEVAVKVFDLQYR---EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------------ 498 (628)
Q Consensus 435 ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------------ 498 (628)
||+|+||.||+++.. +|+.+|+|++..... ...+.+.+|++++++++||||+++++.+..+...
T Consensus 1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L 80 (265)
T cd05579 1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL 80 (265)
T ss_pred CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence 689999999999984 599999999865432 4456788999999999999999987765432211
Q ss_pred ------------------------------------------------------ccccccccccccCc------cccccc
Q 037488 499 ------------------------------------------------------ADFGMAKPLLKEDQ------SLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------~DFGla~~~~~~~~------~~~~~~ 518 (628)
+|||+++....... ......
T Consensus 81 ~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ 160 (265)
T cd05579 81 ASLLENVGSLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKR 160 (265)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccccC
Confidence 38998875433211 011233
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
..++..|+|||+..+..++.++|||||||++||+++|+.||...... ........ ... ..+
T Consensus 161 ~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~-----~~~~~~~~------------~~~--~~~ 221 (265)
T cd05579 161 IVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPE-----EIFQNILN------------GKI--EWP 221 (265)
T ss_pred cccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHH-----HHHHHHhc------------CCc--CCC
Confidence 46889999999998888999999999999999999999999653211 11111000 000 000
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
.....+.++.+++.+||+.+|++|||+.
T Consensus 222 ~~~~~~~~~~~~i~~~l~~~p~~Rpt~~ 249 (265)
T cd05579 222 EDVEVSDEAIDLISKLLVPDPEKRLGAK 249 (265)
T ss_pred ccccCCHHHHHHHHHHhcCCHhhcCCCc
Confidence 0011256789999999999999999994
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re |
| >cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-21 Score=190.35 Aligned_cols=178 Identities=20% Similarity=0.315 Sum_probs=130.4
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhccc-CCCcceeeeeccCCCcc---
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIR-HRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~--- 498 (628)
++|...+.||+|+||.||+|.. .+|+.||+|++... .....+.+.+|++++++++ ||||+++++++.+++..
T Consensus 1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv 80 (280)
T cd05581 1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV 80 (280)
T ss_pred CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence 3688889999999999999987 57999999998653 2233466788999999998 99999998876543211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcc--
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQS-- 513 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~-- 513 (628)
+|||++.........
T Consensus 81 ~e~~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~ 160 (280)
T cd05581 81 LEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPES 160 (280)
T ss_pred EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCccccccCCcccccc
Confidence 399988865332210
Q ss_pred ----------------cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhc
Q 037488 514 ----------------LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL 577 (628)
Q Consensus 514 ----------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~ 577 (628)
.......|+..|+|||+..+..++.++||||+||+++|+++|+.||..... ........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-~~~~~~~~---- 235 (280)
T cd05581 161 NKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNE-YLTFQKIL---- 235 (280)
T ss_pred CCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccH-HHHHHHHH----
Confidence 112234689999999999888899999999999999999999999975321 00011000
Q ss_pred CCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 578 PISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
. .....+...+..+.+++.+||+.||++|||+
T Consensus 236 --------~--------~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~ 267 (280)
T cd05581 236 --------K--------LEYSFPPNFPPDAKDLIEKLLVLDPQDRLGV 267 (280)
T ss_pred --------h--------cCCCCCCccCHHHHHHHHHHhcCCHhhCCCc
Confidence 0 0011222335568999999999999999999
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto |
| >cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-20 Score=191.70 Aligned_cols=193 Identities=17% Similarity=0.246 Sum_probs=119.7
Q ss_pred ccccCCccEEEEEEecCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------------
Q 037488 434 LIDRGGIGYVYKRRIHYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------------- 498 (628)
Q Consensus 434 ~ig~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------------- 498 (628)
.+|.|+++.||++.. +++.||||++... .....+.+.+|+++++.++||||+++++++..++..
T Consensus 9 ~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~ 87 (314)
T cd08216 9 CFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCE 87 (314)
T ss_pred hhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHH
Confidence 344444545554443 6999999999754 344567799999999999999999998876543211
Q ss_pred -------------------------------------------------------ccccccccccccCc-----cccccc
Q 037488 499 -------------------------------------------------------ADFGMAKPLLKEDQ-----SLIQTQ 518 (628)
Q Consensus 499 -------------------------------------------------------~DFGla~~~~~~~~-----~~~~~~ 518 (628)
+|||.+........ ......
T Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
T cd08216 88 DLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKS 167 (314)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCccceeecccccccccccccccc
Confidence 27777765432211 011123
Q ss_pred ccccccccCccccccC--ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccc---------eeecc
Q 037488 519 TLATIGYMAPEYGREG--RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVM---------KVVDA 587 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~--~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 587 (628)
..++..|+|||++.+. .|+.++|||||||++|||++|+.||........... ......+.... ...+.
T Consensus 168 ~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (314)
T cd08216 168 SVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLE-KVRGTVPCLLDKSTYPLYEDSMSQS 246 (314)
T ss_pred ccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHH-HHhccCccccccCchhhhcCCcCcc
Confidence 4578899999998763 589999999999999999999999975322111111 11110000000 00000
Q ss_pred ---c--ccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 ---H--LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ---~--~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ...............+.++.+++.+||+.||++|||+.|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~l 292 (314)
T cd08216 247 RSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQL 292 (314)
T ss_pred cccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHH
Confidence 0 0000001111222345678999999999999999998764
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc |
| >cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=185.66 Aligned_cols=167 Identities=24% Similarity=0.427 Sum_probs=116.7
Q ss_pred cccccCCccEEEEEEecC-C----------cEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 433 NLIDRGGIGYVYKRRIHY-G----------MEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~~~-~----------~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
+.||+|+||.||+|.... + ..||+|.+...... ...+.+|+.++++++||||++++++|......
T Consensus 1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~ 79 (259)
T cd05037 1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVRDENIMVE 79 (259)
T ss_pred CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEecCCcEEEE
Confidence 368999999999998743 3 35788887654333 57789999999999999999999977421100
Q ss_pred ----------------------------------------------------------------------cccccccccc
Q 037488 499 ----------------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 499 ----------------------------------------------------------------------~DFGla~~~~ 508 (628)
+|||+|+...
T Consensus 80 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~ 159 (259)
T cd05037 80 EYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVL 159 (259)
T ss_pred EcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCcccccc
Confidence 2666665432
Q ss_pred ccCcccccccccccccccCccccccC--ccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceee
Q 037488 509 KEDQSLIQTQTLATIGYMAPEYGREG--RVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVV 585 (628)
Q Consensus 509 ~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (628)
. .....++..|+|||++.+. .++.++|||||||++|||++ |..||....... ...+..
T Consensus 160 ~------~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~--~~~~~~----------- 220 (259)
T cd05037 160 S------REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSE--KERFYQ----------- 220 (259)
T ss_pred c------ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCchh--HHHHHh-----------
Confidence 2 1234577889999999876 78999999999999999999 577776532111 111110
Q ss_pred cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.... .+.....++.+++.+||..+|++|||+.||
T Consensus 221 ~~~~---------~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i 254 (259)
T cd05037 221 DQHR---------LPMPDCAELANLINQCWTYDPTKRPSFRAI 254 (259)
T ss_pred cCCC---------CCCCCchHHHHHHHHHhccChhhCCCHHHH
Confidence 0000 000112568999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki |
| >cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3 | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-20 Score=185.22 Aligned_cols=169 Identities=21% Similarity=0.230 Sum_probs=114.6
Q ss_pred ccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHh---hcccCCCcceeeeeccCCCcc--------
Q 037488 434 LIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMM---KHIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 434 ~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l---~~l~h~niv~l~~~~~~~~~~-------- 498 (628)
.||+|+||.||++.. .+++.+|+|.+.... ......+.+|..++ ...+||||+++++++..++..
T Consensus 1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~ 80 (279)
T cd05633 1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN 80 (279)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence 489999999999987 568999999986432 11223344554433 344799999988766433211
Q ss_pred ----------------------------------------------------------ccccccccccccCccccccccc
Q 037488 499 ----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTL 520 (628)
Q Consensus 499 ----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~ 520 (628)
+|||++....... .....
T Consensus 81 ~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~ 156 (279)
T cd05633 81 GGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASV 156 (279)
T ss_pred CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcceeccccC----ccCcC
Confidence 3999887543221 12346
Q ss_pred ccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhc
Q 037488 521 ATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVI 599 (628)
Q Consensus 521 gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (628)
||..|+|||+..+ ..++.++||||+||++|||++|+.||....... ......... ......
T Consensus 157 ~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~--~~~~~~~~~----------------~~~~~~ 218 (279)
T cd05633 157 GTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD--KHEIDRMTL----------------TVNVEL 218 (279)
T ss_pred CCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcC--HHHHHHHhh----------------cCCcCC
Confidence 9999999999864 568999999999999999999999997532211 111100000 001112
Q ss_pred hhhhHHHHHHHhhcccCCCcccCCC
Q 037488 600 KGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 600 ~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
+...+.++.+++.+||+.||++||+
T Consensus 219 ~~~~~~~~~~li~~~l~~~p~~R~~ 243 (279)
T cd05633 219 PDSFSPELKSLLEGLLQRDVSKRLG 243 (279)
T ss_pred ccccCHHHHHHHHHHhcCCHHHhcC
Confidence 3345667999999999999999995
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi |
| >KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-21 Score=199.12 Aligned_cols=188 Identities=22% Similarity=0.282 Sum_probs=141.7
Q ss_pred HHHHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCc
Q 037488 420 LELFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDF 497 (628)
Q Consensus 420 ~~l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 497 (628)
..+-..++.|++.+.||.|.+|.||+++. ++|+.+|||++......+ ..+..|.++++.. +|||++.++|++...+.
T Consensus 12 ~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~d-eEiE~eynil~~~~~hpnv~~fyg~~~k~~~ 90 (953)
T KOG0587|consen 12 SSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEE-EEIELEYNMLKKYSHHPNVATFYGAFIKKDP 90 (953)
T ss_pred hhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCcccc-HHHHHHHHHHHhccCCCCcceEEEEEEEecC
Confidence 33445678889999999999999999985 779999999987654332 4456788888877 79999999997642110
Q ss_pred c-------------------------------------------------------------------------cccccc
Q 037488 498 K-------------------------------------------------------------------------ADFGMA 504 (628)
Q Consensus 498 ~-------------------------------------------------------------------------~DFGla 504 (628)
. +|||++
T Consensus 91 ~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~~VKLvDFGvS 170 (953)
T KOG0587|consen 91 GNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENAEVKLVDFGVS 170 (953)
T ss_pred CCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccCcEEEeeeeee
Confidence 0 399999
Q ss_pred ccccccCcccccccccccccccCccccccC-----ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC
Q 037488 505 KPLLKEDQSLIQTQTLATIGYMAPEYGREG-----RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI 579 (628)
Q Consensus 505 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~ 579 (628)
..+... .....+.+||++|||||++... .|+.++|+||+|++..||.-|.+|+.++.+.. .. +.
T Consensus 171 aQldsT--~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmr----aL----F~- 239 (953)
T KOG0587|consen 171 AQLDST--VGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMR----AL----FL- 239 (953)
T ss_pred eeeecc--cccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcchhh----hh----cc-
Confidence 877443 2345678999999999998743 37889999999999999999999997754421 10 00
Q ss_pred ccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 580 SVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+....+.....|..++.++.++|..|+.+|-++||++.++
T Consensus 240 ---------IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~l 279 (953)
T KOG0587|consen 240 ---------IPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEEL 279 (953)
T ss_pred ---------CCCCCCccccchhhHHHHHHHHHHHHHhhccccCcchhhh
Confidence 0111222344567789999999999999999999998763
|
|
| >cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-20 Score=188.44 Aligned_cols=183 Identities=22% Similarity=0.267 Sum_probs=127.2
Q ss_pred CCCcccccccCCccEEEEEEe----cCCcEEEEEEeeccc----hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc
Q 037488 428 GFSENNLIDRGGIGYVYKRRI----HYGMEVAVKVFDLQY----REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 498 (628)
+|...+.||+|+||.||+++. .+++.||||+++... ....+.+.+|++++.++ +||||+++++.+..+...
T Consensus 1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~ 80 (288)
T cd05583 1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL 80 (288)
T ss_pred CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence 367788999999999999874 357889999987432 22345688999999999 599999987654322110
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+++.......
T Consensus 81 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~ 160 (288)
T cd05583 81 HLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEE 160 (288)
T ss_pred EEEEecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECccccccccccc
Confidence 38998876543321
Q ss_pred ccccccccccccccCccccccCc--cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 513 SLIQTQTLATIGYMAPEYGREGR--VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
. ......|+..|+|||+..+.. ++.++||||||+++|||++|+.||..... ......+......
T Consensus 161 ~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~-~~~~~~~~~~~~~------------ 226 (288)
T cd05583 161 E-RAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGE-QNSQSEISRRILK------------ 226 (288)
T ss_pred c-ccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcc-cchHHHHHHHHHc------------
Confidence 1 122346899999999987765 78899999999999999999999853211 1111111111110
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ....+...+..+.+++.+||+.||++|||+.++
T Consensus 227 ~----~~~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~ 260 (288)
T cd05583 227 S----KPPFPKTMSAEARDFIQKLLEKDPKKRLGANGA 260 (288)
T ss_pred c----CCCCCcccCHHHHHHHHHHhcCCHhhccCcchH
Confidence 0 011222345668999999999999999997653
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines |
| >cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-20 Score=185.49 Aligned_cols=180 Identities=20% Similarity=0.280 Sum_probs=126.3
Q ss_pred CCCcccccccCCccEEEEEEe----cCCcEEEEEEeeccc----hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc
Q 037488 428 GFSENNLIDRGGIGYVYKRRI----HYGMEVAVKVFDLQY----REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 498 (628)
+|+..+.||+|+||.||+|+. .+|+.||+|+++... ....+.+.+|+++++++ +||||+++++++..+...
T Consensus 1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~ 80 (290)
T cd05613 1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL 80 (290)
T ss_pred CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence 477788999999999999875 368999999997532 22345678899999999 599999998766443211
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+++.......
T Consensus 81 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~ 160 (290)
T cd05613 81 HLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEV 160 (290)
T ss_pred EEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccceecccccc
Confidence 39999886533221
Q ss_pred ccccccccccccccCccccccC--ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 513 SLIQTQTLATIGYMAPEYGREG--RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
.......|+..|+|||++.+. .++.++|||||||++|||++|+.||..... ......+......
T Consensus 161 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~-~~~~~~~~~~~~~------------ 226 (290)
T cd05613 161 -ERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGE-KNSQAEISRRILK------------ 226 (290)
T ss_pred -cccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCc-cccHHHHHHHhhc------------
Confidence 112345699999999998753 478899999999999999999999864211 1111222111100
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
. ....+..++..+.+++.+||+.||++||+.
T Consensus 227 ~----~~~~~~~~~~~~~~ll~~~l~~~p~~R~~~ 257 (290)
T cd05613 227 S----EPPYPQEMSALAKDIIQRLLMKDPKKRLGC 257 (290)
T ss_pred c----CCCCCccCCHHHHHHHHHHhcCCHHHhcCC
Confidence 0 011122345668999999999999999853
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-20 Score=186.24 Aligned_cols=196 Identities=23% Similarity=0.239 Sum_probs=129.3
Q ss_pred CCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 429 FSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
|+..+.||+|+||.||+|+. .+++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..
T Consensus 1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~ 80 (282)
T cd07829 1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC 80 (282)
T ss_pred CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence 55667899999999999987 569999999997643 33346678899999999999999998876543211
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||+++....... .....
T Consensus 81 ~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~--~~~~~ 158 (282)
T cd07829 81 DMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLR--TYTHE 158 (282)
T ss_pred CcCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccccCCCcc--ccCcc
Confidence 38888876533221 12334
Q ss_pred cccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC----ccc---ee--ecccc
Q 037488 520 LATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI----SVM---KV--VDAHL 589 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~----~~~---~~--~~~~~ 589 (628)
.++..|+|||++.+. .++.++|||||||++|||++|++||......+ .... ....... .+. .. .+...
T Consensus 159 ~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (282)
T cd07829 159 VVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEID-QLFK-IFQILGTPTEESWPGVTKLPDYKPTF 236 (282)
T ss_pred ccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHH-HHHH-HHHHhCCCcHHHHHhhcccccccccc
Confidence 578889999998776 78999999999999999999999986532110 0111 1000000 000 00 00000
Q ss_pred cCCcc-cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 LSQED-KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 ~~~~~-~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..... ......+..+.++.+++.+||+.||++||++.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~ 276 (282)
T cd07829 237 PKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEA 276 (282)
T ss_pred cccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHH
Confidence 00000 0000111235679999999999999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-20 Score=199.44 Aligned_cols=202 Identities=25% Similarity=0.415 Sum_probs=87.7
Q ss_pred CCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhcccccc
Q 037488 58 KLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSM 137 (628)
Q Consensus 58 ~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l 137 (628)
+...|+++++.++.+ |..+. ++|+.|+|++|+|+.++... .++|++|++++|.++.+ |..+. ..+
T Consensus 179 ~~~~L~L~~~~LtsL-P~~Ip--~~L~~L~Ls~N~LtsLP~~l--------~~nL~~L~Ls~N~LtsL-P~~l~---~~L 243 (754)
T PRK15370 179 NKTELRLKILGLTTI-PACIP--EQITTLILDNNELKSLPENL--------QGNIKTLYANSNQLTSI-PATLP---DTI 243 (754)
T ss_pred CceEEEeCCCCcCcC-Ccccc--cCCcEEEecCCCCCcCChhh--------ccCCCEEECCCCccccC-Chhhh---ccc
Confidence 345556665555543 33222 34556666666655544321 13556666666655532 33221 234
Q ss_pred ceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCC
Q 037488 138 EIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSN 217 (628)
Q Consensus 138 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 217 (628)
+.|++++|++. .+|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|+++. +|..+. .+|+.|++++|
T Consensus 244 ~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N 314 (754)
T PRK15370 244 QEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSN 314 (754)
T ss_pred cEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCC
Confidence 55555555544 2333332 24555555555544 2333322 244555555554442 222221 23444444444
Q ss_pred cCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCC
Q 037488 218 KLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFS 291 (628)
Q Consensus 218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (628)
+++. +|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|.++. +|..+ .+.|+.|++++|.++
T Consensus 315 ~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 315 SLTA-LPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred cccc-CCcccc--ccceeccccCCccccCChhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCC
Confidence 4443 222111 344444444444444444332 344444444444442 22222 134444444444444
|
|
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-20 Score=192.27 Aligned_cols=173 Identities=18% Similarity=0.171 Sum_probs=131.7
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~---- 498 (628)
.++.|.....+|+|+|+.|-++.. .+++..|||++.... ..-.+|+.++... +||||+++.++|.++...
T Consensus 320 ~~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~----~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~ 395 (612)
T KOG0603|consen 320 FTESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA----DDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVM 395 (612)
T ss_pred cchhhccccccCCCCccceeeeeccccccchhheeccccc----cccccccchhhhhcCCCcceeecceecCCceeeeee
Confidence 367788888899999999999876 779999999997552 2234677666666 799999999988764321
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||.++..... .
T Consensus 396 e~l~g~ell~ri~~~~~~~~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~-----~ 470 (612)
T KOG0603|consen 396 ELLDGGELLRRIRSKPEFCSEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS-----C 470 (612)
T ss_pred hhccccHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhCchh-----h
Confidence 389999876443 2
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
.+.+-|..|.|||+.....|++++|+||+|++||||++|+.||.....+ ......... +.
T Consensus 471 ~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~----~ei~~~i~~------------~~---- 530 (612)
T KOG0603|consen 471 DTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG----IEIHTRIQM------------PK---- 530 (612)
T ss_pred cccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch----HHHHHhhcC------------Cc----
Confidence 4567899999999999999999999999999999999999999764332 111111110 00
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+.++++|+.+||+.||.+||+|.++
T Consensus 531 --~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i 560 (612)
T KOG0603|consen 531 --FSECVSDEAKDLLQQLLQVDPALRLGADEI 560 (612)
T ss_pred --cccccCHHHHHHHHHhccCChhhCcChhhh
Confidence 113457779999999999999999999875
|
|
| >cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-20 Score=183.96 Aligned_cols=168 Identities=21% Similarity=0.243 Sum_probs=114.4
Q ss_pred ccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHH---HHhhcccCCCcceeeeeccCCCcc--------
Q 037488 434 LIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIEC---DMMKHIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 434 ~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~---~~l~~l~h~niv~l~~~~~~~~~~-------- 498 (628)
.||+|+||.||+|.. .+|+.||+|.+.... ......+..|. +.++...||+|+++++++..++..
T Consensus 1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~ 80 (278)
T cd05606 1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN 80 (278)
T ss_pred CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence 489999999999986 568999999986532 11122233443 344556799999988766543211
Q ss_pred ----------------------------------------------------------ccccccccccccCccccccccc
Q 037488 499 ----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTL 520 (628)
Q Consensus 499 ----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~ 520 (628)
+|||+++...... .....
T Consensus 81 g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~----~~~~~ 156 (278)
T cd05606 81 GGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASV 156 (278)
T ss_pred CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCccccCccC----CcCcC
Confidence 3999987543221 13457
Q ss_pred ccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhc
Q 037488 521 ATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVI 599 (628)
Q Consensus 521 gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (628)
||..|+|||++.++ .++.++||||+||++|||++|+.||....... ......... ......
T Consensus 157 ~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~--~~~~~~~~~----------------~~~~~~ 218 (278)
T cd05606 157 GTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD--KHEIDRMTL----------------TMAVEL 218 (278)
T ss_pred CCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccc--hHHHHHHhh----------------ccCCCC
Confidence 99999999998754 68999999999999999999999997532211 111000000 001112
Q ss_pred hhhhHHHHHHHhhcccCCCcccCC
Q 037488 600 KGQCVSFVFNLAMKCTVESPEERV 623 (628)
Q Consensus 600 ~~~~~~~~~~l~~~cl~~dp~~Rp 623 (628)
+...+.++.+++.+|+..+|++||
T Consensus 219 ~~~~s~~~~~li~~~l~~~p~~R~ 242 (278)
T cd05606 219 PDSFSPELRSLLEGLLQRDVNRRL 242 (278)
T ss_pred CCcCCHHHHHHHHHHhhcCHHhcc
Confidence 233466799999999999999999
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co |
| >KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-21 Score=183.40 Aligned_cols=195 Identities=19% Similarity=0.174 Sum_probs=129.9
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccC--C----CcceeeeeccCCCcc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRH--R----NLIKIISSCSNDDFK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~----niv~l~~~~~~~~~~ 498 (628)
+.+|.+.+.+|+|+||.|-++.+ ..+..||||+++.- ....+...-|++++.++.+ | -+|++.+++.-....
T Consensus 88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V-~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghi 166 (415)
T KOG0671|consen 88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNV-DKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHI 166 (415)
T ss_pred ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHH-HHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCce
Confidence 78899999999999999999876 55889999999742 2334556779999999943 2 246665544211100
Q ss_pred --------------------------------------------------------------------------------
Q 037488 499 -------------------------------------------------------------------------------- 498 (628)
Q Consensus 499 -------------------------------------------------------------------------------- 498 (628)
T Consensus 167 CivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ 246 (415)
T KOG0671|consen 167 CIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPL 246 (415)
T ss_pred EEEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccceeccC
Confidence
Q ss_pred -------ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHH
Q 037488 499 -------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKH 571 (628)
Q Consensus 499 -------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~ 571 (628)
.|||-|+.....+ .+.+.|..|+|||++.|-.++.++||||+||||.|+.||..-|..-... ...+
T Consensus 247 ks~~I~vIDFGsAtf~~e~h-----s~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~--EHLa 319 (415)
T KOG0671|consen 247 KSTAIKVIDFGSATFDHEHH-----STIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENL--EHLA 319 (415)
T ss_pred CCcceEEEecCCcceeccCc-----ceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcH--HHHH
Confidence 3999998643322 4568899999999999999999999999999999999999988653211 1112
Q ss_pred HHHhhcCCccceeeccc---------------ccCCc--------ccc----hhchhhhHHHHHHHhhcccCCCcccCCC
Q 037488 572 WVNDLLPISVMKVVDAH---------------LLSQE--------DKH----FVIKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 572 ~~~~~~~~~~~~~~~~~---------------~~~~~--------~~~----~~~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
++......-...++... ..... ... ....+....++.||+.+||..||.+|+|
T Consensus 320 MMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiT 399 (415)
T KOG0671|consen 320 MMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRIT 399 (415)
T ss_pred HHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCcccccc
Confidence 23322221111110000 00000 000 0011234567999999999999999999
Q ss_pred CCCC
Q 037488 625 AKEI 628 (628)
Q Consensus 625 ~~ev 628 (628)
++|+
T Consensus 400 l~EA 403 (415)
T KOG0671|consen 400 LREA 403 (415)
T ss_pred HHHH
Confidence 9874
|
|
| >cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-20 Score=180.38 Aligned_cols=168 Identities=22% Similarity=0.252 Sum_probs=123.2
Q ss_pred cccCCccEEEEEEe-cCCcEEEEEEeeccch---hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------------
Q 037488 435 IDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR---EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------------ 498 (628)
Q Consensus 435 ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------------ 498 (628)
||+|+||.||++.. .+++.+|+|++..... .....+.+|++++++++||||+++++++..+...
T Consensus 1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L 80 (250)
T cd05123 1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL 80 (250)
T ss_pred CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence 69999999999987 4689999999875432 2456788999999999999999998766443211
Q ss_pred ------------------------------------------------------ccccccccccccCccccccccccccc
Q 037488 499 ------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLATIG 524 (628)
Q Consensus 499 ------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt~~ 524 (628)
+|||++....... .......|+..
T Consensus 81 ~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~--~~~~~~~~~~~ 158 (250)
T cd05123 81 FSHLSKEGRFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEG--SRTNTFCGTPE 158 (250)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCcceecccCC--CcccCCcCCcc
Confidence 3888877653321 11234568999
Q ss_pred ccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhH
Q 037488 525 YMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCV 604 (628)
Q Consensus 525 y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (628)
|+|||...+..++.++||||||+++||+++|+.||..... ......... .....+...+
T Consensus 159 ~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~-----~~~~~~~~~----------------~~~~~~~~~~ 217 (250)
T cd05123 159 YLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDR-----KEIYEKILK----------------DPLRFPEFLS 217 (250)
T ss_pred ccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH-----HHHHHHHhc----------------CCCCCCCCCC
Confidence 9999999888899999999999999999999999964321 111111100 0111222335
Q ss_pred HHHHHHhhcccCCCcccCCCC
Q 037488 605 SFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 605 ~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
.++.+++.+||..||++||++
T Consensus 218 ~~l~~~i~~~l~~~p~~R~~~ 238 (250)
T cd05123 218 PEARDLISGLLQKDPTKRLGS 238 (250)
T ss_pred HHHHHHHHHHhcCCHhhCCCc
Confidence 668999999999999999998
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-20 Score=180.67 Aligned_cols=177 Identities=17% Similarity=0.217 Sum_probs=125.5
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc-cCCCcceeee----------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI-RHRNLIKIIS---------- 490 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~---------- 490 (628)
..+|....+||+|+||.|..|.. .+.+.+|||+++... .++.+.-..|-++|+-- +-|.+|+++.
T Consensus 348 ~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyF 427 (683)
T KOG0696|consen 348 ATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYF 427 (683)
T ss_pred ecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheee
Confidence 34677788999999999999976 567889999987542 22333345566776655 4566666543
Q ss_pred ---eccCCCcc-----------------------------------------------------ccccccccccccCccc
Q 037488 491 ---SCSNDDFK-----------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 491 ---~~~~~~~~-----------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
|+.+++.. +|||+++.-...+.
T Consensus 428 VMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~~-- 505 (683)
T KOG0696|consen 428 VMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDGV-- 505 (683)
T ss_pred EEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeecccccccccCCc--
Confidence 44443321 49999997544432
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
.+.+++||+.|+|||++...+|+.++|.|||||+||||+.|++||++...+ ..+...+ +...
T Consensus 506 TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~-elF~aI~------------ehnv----- 567 (683)
T KOG0696|consen 506 TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDED-ELFQAIM------------EHNV----- 567 (683)
T ss_pred ceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHH-HHHHHHH------------HccC-----
Confidence 346789999999999999999999999999999999999999999874221 1122211 1111
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
..|...+.++.++....+.+.|.+|.-.
T Consensus 568 ---syPKslSkEAv~ickg~ltK~P~kRLGc 595 (683)
T KOG0696|consen 568 ---SYPKSLSKEAVAICKGLLTKHPGKRLGC 595 (683)
T ss_pred ---cCcccccHHHHHHHHHHhhcCCccccCC
Confidence 1233456778899999999999998643
|
|
| >KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-20 Score=164.58 Aligned_cols=197 Identities=19% Similarity=0.212 Sum_probs=140.7
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhccc-CCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIR-HRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~----- 498 (628)
.++|++.+.+|+|.|+.||.|.. .+.+.++||+++.-. .+.+.||+.+|..++ |||||+++++..+....
T Consensus 37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk---kkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLi 113 (338)
T KOG0668|consen 37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVK---KKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLI 113 (338)
T ss_pred cchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHH---HHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhH
Confidence 56788889999999999999974 678889999997532 355789999999997 99999999876554321
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
.|+|+|.++.+.... .
T Consensus 114 FE~v~n~Dfk~ly~tl~d~dIryY~~elLkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eY---n 190 (338)
T KOG0668|consen 114 FEYVNNTDFKQLYPTLTDYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEY---N 190 (338)
T ss_pred hhhhccccHHHHhhhhchhhHHHHHHHHHHHHhHHHhcCcccccCCcceeeechhhceeeeeecchHhhcCCCcee---e
Confidence 399999988766543 5
Q ss_pred cccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccce-------eecccc
Q 037488 518 QTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMK-------VVDAHL 589 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 589 (628)
-.+.+.+|-.||.+..- .|+.+-|+|||||++.+|+..+.||....++...+...++..-...+.. ..++..
T Consensus 191 VRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~ 270 (338)
T KOG0668|consen 191 VRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQF 270 (338)
T ss_pred eeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhH
Confidence 56789999999998764 4899999999999999999999999765444433443332221111111 112111
Q ss_pred cC---Ccc-c---chhc---hhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 LS---QED-K---HFVI---KGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 ~~---~~~-~---~~~~---~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. ... . ++.. ..-.++++.|++.+.+..|..+|+||.|+
T Consensus 271 ~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEa 319 (338)
T KOG0668|consen 271 EDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEA 319 (338)
T ss_pred hhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHH
Confidence 11 000 0 0000 01235789999999999999999999873
|
|
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-19 Score=198.08 Aligned_cols=68 Identities=22% Similarity=0.242 Sum_probs=56.8
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeecc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCS 493 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 493 (628)
.++|...+.||+|+||.||+|.. .+++.||||+++... ......+.+|+.+++.++||||+++++++.
T Consensus 3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~ 74 (669)
T cd05610 3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQ 74 (669)
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEE
Confidence 36788899999999999999987 478999999996532 333467889999999999999999987654
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-20 Score=189.26 Aligned_cols=186 Identities=23% Similarity=0.322 Sum_probs=137.0
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeec----------
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSC---------- 492 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~---------- 492 (628)
...++|....++|.|+||.|||++. .+++..|||+++.....+.+-..+|+-+++.++|||||.++|.+
T Consensus 12 nP~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicM 91 (829)
T KOG0576|consen 12 NPQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICM 91 (829)
T ss_pred CCccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEE
Confidence 3457888999999999999999997 67999999999987777777788999999999999999987643
Q ss_pred ---cCCCc-----------------------------------------------------cccccccccccccCccccc
Q 037488 493 ---SNDDF-----------------------------------------------------KADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 493 ---~~~~~-----------------------------------------------------~~DFGla~~~~~~~~~~~~ 516 (628)
-++.. .+|||.+..+... ....
T Consensus 92 EycgggslQdiy~~TgplselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~gDvklaDfgvsaqitat--i~Kr 169 (829)
T KOG0576|consen 92 EYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEGDVKLADFGVSAQITAT--IAKR 169 (829)
T ss_pred EecCCCcccceeeecccchhHHHHHHHhhhhccchhhhcCCcccccccccceeecccCceeecccCchhhhhhh--hhhh
Confidence 22211 0599998866433 2334
Q ss_pred ccccccccccCccccc---cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 517 TQTLATIGYMAPEYGR---EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~---~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
.+++||++|||||+.. .+.|..++|||+.|+...|+..-++|-.+..+... +....++ ..++
T Consensus 170 ksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhpmr~-l~LmTkS--------~~qp------ 234 (829)
T KOG0576|consen 170 KSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPMRA-LFLMTKS--------GFQP------ 234 (829)
T ss_pred hcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccchHHH-HHHhhcc--------CCCC------
Confidence 5678999999999875 35699999999999999999988888544222110 0000000 0111
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
....-+..+++.+.++++.|+.++|++|||+..
T Consensus 235 -p~lkDk~kws~~fh~fvK~altknpKkRptaek 267 (829)
T KOG0576|consen 235 -PTLKDKTKWSEFFHNFVKGALTKNPKKRPTAEK 267 (829)
T ss_pred -CcccCCccchHHHHHHHHHHhcCCCccCCChhh
Confidence 111222345777999999999999999999864
|
|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-20 Score=181.26 Aligned_cols=176 Identities=18% Similarity=0.245 Sum_probs=131.9
Q ss_pred cCCCcccccccCCccEEEEEEecCC-cEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIHYG-MEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~~~-~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
.++.....+|-|+||.|-.++.... ..+|+|++++. +..+.+....|-.+|-.++.|.||+++-.|.+..+.
T Consensus 420 ~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLm 499 (732)
T KOG0614|consen 420 SDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLM 499 (732)
T ss_pred hhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhH
Confidence 4556667899999999999887533 34899988653 244556778899999999999999997665543322
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
-|||+|+.+.... .+
T Consensus 500 EaClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~---KT 576 (732)
T KOG0614|consen 500 EACLGGELWTILRDRGSFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGR---KT 576 (732)
T ss_pred HhhcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhhHHHhccCC---ce
Confidence 2999999876543 34
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
.++|||+.|.|||++.+...+.++|.||+|+.+||+++|.+||.+..+-. +.. .++.+.. .
T Consensus 577 wTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmk-tYn----------------~ILkGid--~ 637 (732)
T KOG0614|consen 577 WTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMK-TYN----------------LILKGID--K 637 (732)
T ss_pred eeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHH-HHH----------------HHHhhhh--h
Confidence 78999999999999999999999999999999999999999997643321 111 1111111 1
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
...|...+..+.++|.+....+|.+|--
T Consensus 638 i~~Pr~I~k~a~~Lik~LCr~~P~ERLG 665 (732)
T KOG0614|consen 638 IEFPRRITKTATDLIKKLCRDNPTERLG 665 (732)
T ss_pred hhcccccchhHHHHHHHHHhcCcHhhhc
Confidence 2233445667899999999999999964
|
|
| >KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-19 Score=164.54 Aligned_cols=137 Identities=25% Similarity=0.302 Sum_probs=107.8
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeec--cchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDL--QYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF------ 497 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------ 497 (628)
.+.+..+.||-|+||+||.+.+ .+|+.||.|++.. ..-...+.+.+|++++.-.+|.|++..++.-.....
T Consensus 53 ~Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEi 132 (449)
T KOG0664|consen 53 QDIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQEL 132 (449)
T ss_pred ccCCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHH
Confidence 4556678999999999999988 6799999999853 233345778999999999999999987664321100
Q ss_pred ----------------------------------------------------------------cccccccccccccCcc
Q 037488 498 ----------------------------------------------------------------KADFGMAKPLLKEDQS 513 (628)
Q Consensus 498 ----------------------------------------------------------------~~DFGla~~~~~~~~~ 513 (628)
.||||+||....+. .
T Consensus 133 YV~TELmQSDLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~-~ 211 (449)
T KOG0664|consen 133 YVLTELMQSDLHKIIVSPQALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRD-R 211 (449)
T ss_pred HHHHHHHHhhhhheeccCCCCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEecccccccccchhh-h
Confidence 06999999754433 3
Q ss_pred cccccccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccC
Q 037488 514 LIQTQTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFS 564 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~ 564 (628)
...+..+-|-+|+|||+++|.+ |+..+||||.||+..|++-++.-|....+
T Consensus 212 ~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~P 263 (449)
T KOG0664|consen 212 LNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGP 263 (449)
T ss_pred hhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccCh
Confidence 3445678999999999999865 99999999999999999999888876443
|
|
| >cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=169.04 Aligned_cols=155 Identities=19% Similarity=0.106 Sum_probs=110.2
Q ss_pred CCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------------------
Q 037488 438 GGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------------------ 498 (628)
Q Consensus 438 G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------------------ 498 (628)
|.||.||+++. .+++.||+|++.... .+.+|...+....||||+++++++.+++..
T Consensus 4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 78 (237)
T cd05576 4 GVIDKVLLVMDTRTQQTFILKGLRKSS-----EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISK 78 (237)
T ss_pred cccceEEEEEEccCCcEEEEEeecchh-----hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHH
Confidence 88999999987 678999999996543 233455556666799999998876543221
Q ss_pred ------------------------------------------------ccccccccccccCcccccccccccccccCccc
Q 037488 499 ------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEY 530 (628)
Q Consensus 499 ------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~ 530 (628)
+|||.++..... .....++..|+|||+
T Consensus 79 ~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~-----~~~~~~~~~y~aPE~ 153 (237)
T cd05576 79 FLNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDS-----CDGEAVENMYCAPEV 153 (237)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccchhccccc-----cccCCcCccccCCcc
Confidence 277766544221 123456778999999
Q ss_pred cccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHH
Q 037488 531 GREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNL 610 (628)
Q Consensus 531 ~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 610 (628)
..+..++.++||||+||++|||++|+.|+....... ... .....+...+.+++++
T Consensus 154 ~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~-------------------~~~------~~~~~~~~~~~~~~~l 208 (237)
T cd05576 154 GGISEETEACDWWSLGAILFELLTGKTLVECHPSGI-------------------NTH------TTLNIPEWVSEEARSL 208 (237)
T ss_pred cCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchhc-------------------ccc------cccCCcccCCHHHHHH
Confidence 988889999999999999999999998875321100 000 0011222345678999
Q ss_pred hhcccCCCcccCCCCCC
Q 037488 611 AMKCTVESPEERVNAKE 627 (628)
Q Consensus 611 ~~~cl~~dp~~Rpt~~e 627 (628)
+.+||+.||++||++.+
T Consensus 209 i~~~l~~dp~~R~~~~~ 225 (237)
T cd05576 209 LQQLLQFNPTERLGAGV 225 (237)
T ss_pred HHHHccCCHHHhcCCCc
Confidence 99999999999999743
|
Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha |
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-19 Score=188.67 Aligned_cols=176 Identities=25% Similarity=0.368 Sum_probs=126.8
Q ss_pred CCcccccccCCcc-EEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc--------
Q 037488 429 FSENNLIDRGGIG-YVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g-~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~-------- 498 (628)
|...+++|.|+-| .||+|... |+.||||++-.. ....+.|||..|+.- .|||||+.++.=.++.+.
T Consensus 511 ~~~~eilG~Gs~Gt~Vf~G~ye-~R~VAVKrll~e---~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~ 586 (903)
T KOG1027|consen 511 FSPKEILGYGSNGTVVFRGVYE-GREVAVKRLLEE---FFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCA 586 (903)
T ss_pred eccHHHcccCCCCcEEEEEeeC-CceehHHHHhhH---hHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhh
Confidence 4556788999888 57999887 889999998543 334567999999988 699999998742222111
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+++.+.....
T Consensus 587 ~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~s 666 (903)
T KOG1027|consen 587 CSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKS 666 (903)
T ss_pred hhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEecccccccccCCCcc
Confidence 49999998865544
Q ss_pred cc-ccccccccccccCccccccCccCcccchhhHhHHHHHHhhC-CCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 513 SL-IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR-KKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 513 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
.. ...+..||-+|+|||++.+.+-+..+||+|+|||+|..++| .+||.+...++..+.. . . ..+.
T Consensus 667 S~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NIl~------~--~-----~~L~ 733 (903)
T KOG1027|consen 667 SFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANILT------G--N-----YTLV 733 (903)
T ss_pred hhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhhhhhhc------C--c-----ccee
Confidence 32 23456799999999999998888899999999999999996 9999765443321110 0 0 0000
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....-.++ ++.+||.+|+..||..||+|.+|
T Consensus 734 -----~L~~~~d~--eA~dLI~~ml~~dP~~RPsa~~V 764 (903)
T KOG1027|consen 734 -----HLEPLPDC--EAKDLISRMLNPDPQLRPSATDV 764 (903)
T ss_pred -----eeccCchH--HHHHHHHHhcCCCcccCCCHHHH
Confidence 00000112 68999999999999999999865
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-20 Score=159.83 Aligned_cols=154 Identities=32% Similarity=0.566 Sum_probs=91.8
Q ss_pred CCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEE
Q 037488 157 NLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSL 236 (628)
Q Consensus 157 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 236 (628)
++.+++.|.|++|+++ .+|..++.+.+|+.|++++|+|. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4556666677777776 44455667777777777777776 45666667777777777666665 456666666666666
Q ss_pred EccCCcCCc--CCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcC
Q 037488 237 HLGSNQITS--IPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRL 314 (628)
Q Consensus 237 ~L~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 314 (628)
||.+|.+.+ +|..|+.+..|+.|+|++|.+. .+|..++.+++|+.|.+..|.+- .+|..++.+++|++|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 666666653 5555555555555555555554 34444555555555555555444 3444444444444444444444
Q ss_pred c
Q 037488 315 Q 315 (628)
Q Consensus 315 ~ 315 (628)
+
T Consensus 186 ~ 186 (264)
T KOG0617|consen 186 T 186 (264)
T ss_pred e
Confidence 4
|
|
| >KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-19 Score=166.67 Aligned_cols=182 Identities=19% Similarity=0.254 Sum_probs=127.7
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDF--- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~--- 497 (628)
.++|....+||+|+|+.|..+++ ++.+.+|+|++++. ..++..-...|-.+..+. +||.+|.++.++..+..
T Consensus 249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlff 328 (593)
T KOG0695|consen 249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFF 328 (593)
T ss_pred cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEE
Confidence 46788889999999999999987 67899999999753 233334445677777766 69999988766543221
Q ss_pred ----------c-----------------------------------------------------ccccccccccccCccc
Q 037488 498 ----------K-----------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 498 ----------~-----------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
. .|+|+++.-...+ .
T Consensus 329 vieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldaeghikltdygmcke~l~~g--d 406 (593)
T KOG0695|consen 329 VIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGPG--D 406 (593)
T ss_pred EEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCceeecccchhhcCCCCC--c
Confidence 1 3999998654443 3
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCC--CccHHHHHHhhcCCccceeecccccCC
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSG--EMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.+++++||+.|+|||++.|..|+..+|.|++||+++||+.|+.||+-...+ ++.-..+.-.. ++++.
T Consensus 407 ~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqv-------ilekq---- 475 (593)
T KOG0695|consen 407 TTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQV-------ILEKQ---- 475 (593)
T ss_pred ccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHH-------Hhhhc----
Confidence 357789999999999999999999999999999999999999999743211 11111111110 00100
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
..+|...+..+..+++..+.+||.+|.-
T Consensus 476 ----iriprslsvkas~vlkgflnkdp~erlg 503 (593)
T KOG0695|consen 476 ----IRIPRSLSVKASHVLKGFLNKDPKERLG 503 (593)
T ss_pred ----ccccceeehhhHHHHHHhhcCCcHHhcC
Confidence 1122223344667888999999999864
|
|
| >smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-18 Score=169.20 Aligned_cols=170 Identities=26% Similarity=0.301 Sum_probs=121.2
Q ss_pred CccEEEEEEec-CCcEEEEEEeeccchhH-HHHHHHHHHHhhcccCCCcceeeeeccCCCcc------------------
Q 037488 439 GIGYVYKRRIH-YGMEVAVKVFDLQYREA-FKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------------------ 498 (628)
Q Consensus 439 ~~g~V~~~~~~-~~~~vavK~~~~~~~~~-~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------------------ 498 (628)
+||.||+|... +|+.+|+|++....... .+.+.+|++.+++++|+||+++++++..+...
T Consensus 1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~ 80 (244)
T smart00220 1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK 80 (244)
T ss_pred CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence 58999999984 58999999997654333 67889999999999999999998876542110
Q ss_pred ------------------------------------------------ccccccccccccCcccccccccccccccCccc
Q 037488 499 ------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEY 530 (628)
Q Consensus 499 ------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~ 530 (628)
+|||.+....... ......|+..|+|||.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~---~~~~~~~~~~~~~pE~ 157 (244)
T smart00220 81 RGRLSEDEARFYARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGG---LLTTFVGTPEYMAPEV 157 (244)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEccccceeeecccc---ccccccCCcCCCCHHH
Confidence 3788777553321 1234568999999999
Q ss_pred cccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHH
Q 037488 531 GREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNL 610 (628)
Q Consensus 531 ~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 610 (628)
..+..++.++||||+|+++|||++|+.||..... ........... .... ......++.++.++
T Consensus 158 ~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~-~~~~~~~~~~~---------------~~~~-~~~~~~~~~~~~~~ 220 (244)
T smart00220 158 LLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQ-LLELFKKIGKP---------------KPPF-PPPEWKISPEAKDL 220 (244)
T ss_pred HccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc-HHHHHHHHhcc---------------CCCC-ccccccCCHHHHHH
Confidence 9888899999999999999999999999865211 11111111100 0000 00000145669999
Q ss_pred hhcccCCCcccCCCCCCC
Q 037488 611 AMKCTVESPEERVNAKEI 628 (628)
Q Consensus 611 ~~~cl~~dp~~Rpt~~ev 628 (628)
+.+||..+|++||++.++
T Consensus 221 i~~~l~~~p~~Rp~~~~~ 238 (244)
T smart00220 221 IRKLLVKDPEKRLTAEEA 238 (244)
T ss_pred HHHHccCCchhccCHHHH
Confidence 999999999999998764
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-19 Score=183.39 Aligned_cols=135 Identities=22% Similarity=0.258 Sum_probs=71.0
Q ss_pred cCCCCCcEEEccCCcCCc-----CCCCccCCCCCcEEEcCCCCCcCC----CCCcccCCccccEEEcCCCcCCCCCcccc
Q 037488 228 GNLTNLRSLHLGSNQITS-----IPSTLLNLKDILYLNLSSNFFTGP----LPLEIGNLKVLIKIDLSMNNFSGVIPITI 298 (628)
Q Consensus 228 ~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 298 (628)
..+++|++|++++|.++. ++..+...++|++|++++|.+++. ....+..+++|+.|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 333444555555444441 222222334555555555554322 12234445566666666666553211111
Q ss_pred C-----CCCCCCEEeCCCCcCcc----cCChhhcCCCCCCEEECcCCccccc----CchhhhcC-CCCCEEEccCCcc
Q 037488 299 G-----YLKDLQYLFLEYNRLQG----SIPDSIGDLINLKSLDLSNNNLSGI----IPISLEKL-LDLKDINVSFNKL 362 (628)
Q Consensus 299 ~-----~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l-~~L~~l~l~~N~l 362 (628)
. ..+.|++|++++|.++. .+...+..+++|+.+++++|.++.. ....+... ..++.+++.+|++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 1 23677777777777751 2334455667788888888887744 22233334 5777777777653
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PLN03225 Serine/threonine-protein kinase SNT7; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.1e-18 Score=181.38 Aligned_cols=121 Identities=19% Similarity=0.199 Sum_probs=70.5
Q ss_pred cccccccccccccCcccccccccccccccCccccccC----------------------ccCcccchhhHhHHHHHHhhC
Q 037488 498 KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREG----------------------RVSTNGDVYSFGIMLIETFTR 555 (628)
Q Consensus 498 ~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~----------------------~~~~~~DVwS~Gvvl~e~ltg 555 (628)
.+|||+|+.+..... ......+||+.|||||.+... .++.++|||||||++|||+++
T Consensus 297 L~DFGlA~~l~~~~~-~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~ 375 (566)
T PLN03225 297 IIDLGAAADLRVGIN-YIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFP 375 (566)
T ss_pred EEeCCCccccccccc-cCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccHHHHHHHHHHHhC
Confidence 379999986543221 223456799999999965322 244567999999999999998
Q ss_pred CCCCCccc--------CCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 556 KKPTDEIF--------SGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 556 ~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
..|++... ........|... ..+.........+........+..+|+.+|++.||++|||+.|
T Consensus 376 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e 446 (566)
T PLN03225 376 NLRSDSNLIQFNRQLKRNDYDLVAWRKL---------VEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGRQRISAKA 446 (566)
T ss_pred cCCCchHHHHHHHHHHhcCCcHHHHHHh---------hccccchhhhhhhhhccccchHHHHHHHHHccCCcccCCCHHH
Confidence 77654310 001111122111 1110000000001111122344679999999999999999876
Q ss_pred C
Q 037488 628 I 628 (628)
Q Consensus 628 v 628 (628)
+
T Consensus 447 ~ 447 (566)
T PLN03225 447 A 447 (566)
T ss_pred H
Confidence 4
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-19 Score=153.60 Aligned_cols=155 Identities=30% Similarity=0.509 Sum_probs=80.6
Q ss_pred CCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEE
Q 037488 181 KLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLN 260 (628)
Q Consensus 181 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~ 260 (628)
++.....|.|++|+++ .+|..+..+.+|+.|++++|+|+ .+|.+++.+++|+.|+++-|++..+|.+|+.++.|+.||
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 3344455555555555 33444555555555555555554 244455555555555555555555555555555555555
Q ss_pred cCCCCCcC-CCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCccc
Q 037488 261 LSSNFFTG-PLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLS 339 (628)
Q Consensus 261 l~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~ 339 (628)
|++|.+.. .+|..|-.|+.|+.|+|+.|.+. .+|..++.+++|+.|.+..|.+. ..|..++.+..|+.|.+.+|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 55555433 34455555555555555555554 34444455555555555555544 34445555555555555555554
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-19 Score=180.02 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=28.9
Q ss_pred ccccEEEcCCCcCCC----CCccccCCCCCCCEEeCCCCcCccc----CChhhcCC-CCCCEEECcCCc
Q 037488 278 KVLIKIDLSMNNFSG----VIPITIGYLKDLQYLFLEYNRLQGS----IPDSIGDL-INLKSLDLSNNN 337 (628)
Q Consensus 278 ~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l-~~L~~L~l~~N~ 337 (628)
+.|+.|++++|.++. .+...+..+++|+++++++|.+... ....+... +.|+.|++.+|.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 445555555555541 1112233345566666666666532 22223333 456666666554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9e-19 Score=187.87 Aligned_cols=186 Identities=20% Similarity=0.246 Sum_probs=130.2
Q ss_pred HHHHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCccee-------
Q 037488 420 LELFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKI------- 488 (628)
Q Consensus 420 ~~l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l------- 488 (628)
.++....++|.+.++||+|+||.|..+++ .+++.+|.|+++.. .......|..|-.+|...+.+=||++
T Consensus 68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~ 147 (1317)
T KOG0612|consen 68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDE 147 (1317)
T ss_pred HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCc
Confidence 34555678999999999999999999987 67999999999753 23345668888888887766666655
Q ss_pred ------eeeccCCCcc-----------------------------------------------------ccccccccccc
Q 037488 489 ------ISSCSNDDFK-----------------------------------------------------ADFGMAKPLLK 509 (628)
Q Consensus 489 ------~~~~~~~~~~-----------------------------------------------------~DFGla~~~~~ 509 (628)
++|+.++|.. ||||-+-.+..
T Consensus 148 ~~LYlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~ 227 (1317)
T KOG0612|consen 148 RYLYLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDA 227 (1317)
T ss_pred cceEEEEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccchhHHhcCC
Confidence 4555555432 59999877755
Q ss_pred cCcccccccccccccccCccccc----c-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcccee
Q 037488 510 EDQSLIQTQTLATIGYMAPEYGR----E-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKV 584 (628)
Q Consensus 510 ~~~~~~~~~~~gt~~y~aPE~~~----~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (628)
++ ...+...+|||.|++||++. + +.|+..+|.||+||++|||+.|..||... .+..-... +
T Consensus 228 dG-~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYad-----slveTY~K--------I 293 (1317)
T KOG0612|consen 228 DG-TVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYAD-----SLVETYGK--------I 293 (1317)
T ss_pred CC-cEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHH-----HHHHHHHH--------H
Confidence 54 34556789999999999985 3 67999999999999999999999999542 11111111 1
Q ss_pred ecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCC
Q 037488 585 VDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
++. +....++.-.+++.++++||.+.+.. |+.|-.
T Consensus 294 m~h----k~~l~FP~~~~VSeeakdLI~~ll~~-~e~RLg 328 (1317)
T KOG0612|consen 294 MNH----KESLSFPDETDVSEEAKDLIEALLCD-REVRLG 328 (1317)
T ss_pred hch----hhhcCCCcccccCHHHHHHHHHHhcC-hhhhcc
Confidence 111 00111111124677899999887754 666654
|
|
| >KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-17 Score=145.16 Aligned_cols=143 Identities=23% Similarity=0.258 Sum_probs=104.1
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhc-ccCCCcceeeeeccCCCcc-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKH-IRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~-l~h~niv~l~~~~~~~~~~----- 498 (628)
+.......||+|+||.|-+-++ .+|+.+|+|++.... .+..++..+|+.+..+ ..-|.+|.++|.+.++...
T Consensus 46 d~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME 125 (282)
T KOG0984|consen 46 DDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICME 125 (282)
T ss_pred hhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHH
Confidence 3444557899999999998776 789999999997643 2234556788876655 4789999999965432110
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
||||++..+...-.
T Consensus 126 ~M~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiA- 204 (282)
T KOG0984|consen 126 LMDTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICDFGISGYLVDSIA- 204 (282)
T ss_pred HhhhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEcccccceeehhhhH-
Confidence 69999987643321
Q ss_pred cccccccccccccCcccccc----CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHH
Q 037488 514 LIQTQTLATIGYMAPEYGRE----GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHW 572 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~----~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~ 572 (628)
.+...|.-.|||||.+.. ..|+-|+||||+|+.+.||++++.||+.-......+.+.
T Consensus 205 --kt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~tpF~qLkqv 265 (282)
T KOG0984|consen 205 --KTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWGTPFQQLKQV 265 (282)
T ss_pred --HHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccCCHHHHHHHH
Confidence 123468889999999864 359999999999999999999999997643333333333
|
|
| >PLN03224 probable serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-17 Score=171.94 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=67.5
Q ss_pred ccccccccccccCcccccccccccccccCccccccCc--------------------cC--cccchhhHhHHHHHHhhCC
Q 037488 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR--------------------VS--TNGDVYSFGIMLIETFTRK 556 (628)
Q Consensus 499 ~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--------------------~~--~~~DVwS~Gvvl~e~ltg~ 556 (628)
+|||+++....... .......+|+.|+|||.+.... |+ .+.||||+||++|||++|.
T Consensus 351 ~DFGla~~~~~~~~-~~~~~g~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~ 429 (507)
T PLN03224 351 IDFGAAVDMCTGIN-FNPLYGMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPE 429 (507)
T ss_pred EeCcCccccccCCc-cCccccCCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCC
Confidence 39999875432211 1111234589999999875422 22 3579999999999999997
Q ss_pred C-CCCcccCCC-------ccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCc---ccCCCC
Q 037488 557 K-PTDEIFSGE-------MTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESP---EERVNA 625 (628)
Q Consensus 557 ~-p~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp---~~Rpt~ 625 (628)
. |+.....-. .....|.. .......+......+.+.++++.+++..+| .+|+|+
T Consensus 430 l~p~~~~~~f~~~~~~~~~~~~~~r~---------------~~~~~~~~~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa 494 (507)
T PLN03224 430 LRPVANIRLFNTELRQYDNDLNRWRM---------------YKGQKYDFSLLDRNKEAGWDLACKLITKRDQANRGRLSV 494 (507)
T ss_pred CCCccchhhhhhHHhhccchHHHHHh---------------hcccCCCcccccccChHHHHHHHHHhccCCCCcccCCCH
Confidence 5 664321100 01111110 000011122233456779999999999876 689998
Q ss_pred CCC
Q 037488 626 KEI 628 (628)
Q Consensus 626 ~ev 628 (628)
.|+
T Consensus 495 ~ea 497 (507)
T PLN03224 495 GQA 497 (507)
T ss_pred HHH
Confidence 764
|
|
| >KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-17 Score=155.14 Aligned_cols=194 Identities=21% Similarity=0.229 Sum_probs=134.6
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
....+|.....+|.|.- .|.-|.+ -.++.||+|++... ....++++.+|..++..+.|+||++++.+++-....
T Consensus 14 tv~~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~ 92 (369)
T KOG0665|consen 14 TVPKRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEE 92 (369)
T ss_pred eeeeeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHH
Confidence 34567888888999888 5655554 46899999998542 344577889999999999999999999988654321
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
.|||+|+.....
T Consensus 93 ~~e~y~v~e~m~~nl~~vi~~elDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~- 171 (369)
T KOG0665|consen 93 FQEVYLVMELMDANLCQVILMELDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTD- 171 (369)
T ss_pred HHhHHHHHHhhhhHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecchhheeeccchhhcccCcc-
Confidence 399999864332
Q ss_pred cccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhh---------------
Q 037488 512 QSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDL--------------- 576 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~--------------- 576 (628)
.+.+..+.|.+|.|||++.+..|.+.+||||.||++.||++|+.-|.+ +..+-+|.+..
T Consensus 172 --~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g----~d~idQ~~ki~~~lgtpd~~F~~qL~ 245 (369)
T KOG0665|consen 172 --FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPG----KDHIDQWNKIIEQLGTPDPSFMKQLQ 245 (369)
T ss_pred --cccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecC----chHHHHHHHHHHHhcCCCHHHHHHhh
Confidence 345667899999999999998899999999999999999999987753 22233332211
Q ss_pred ---------cCC----ccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 577 ---------LPI----SVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 577 ---------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.++ .+.+.+....... ......-....+.+++.+||..||++|.+++++
T Consensus 246 ~~~r~yv~~~~~y~~~~f~~~fpD~~f~~---~~e~~~~~~~~ardll~~MLvi~pe~Risv~da 307 (369)
T KOG0665|consen 246 PTVRNYVENRPQYQAISFSELFPDSLFPV---VLEGSKLDCSLARDLLSKMLVIDPEKRISVDDA 307 (369)
T ss_pred HHHHHHhhcChHhhccchhhhCCcccccc---cccCCccchHHHHHHHHHhhccChhhcccHHHH
Confidence 010 0001111111100 000111124558899999999999999998763
|
|
| >smart00750 KIND kinase non-catalytic C-lobe domain | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-17 Score=150.16 Aligned_cols=108 Identities=20% Similarity=0.199 Sum_probs=74.5
Q ss_pred ccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc
Q 037488 501 FGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS 580 (628)
Q Consensus 501 FGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~ 580 (628)
||+++..... ...||+.|||||++.+..|+.++|||||||++|||+||+.||............+.....+..
T Consensus 53 fG~~~~~~~~-------~~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 125 (176)
T smart00750 53 DGSVAFKTPE-------QSRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPADD 125 (176)
T ss_pred ccceEeeccc-------cCCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCC
Confidence 9998864322 236899999999999999999999999999999999999999654332222222222211100
Q ss_pred cceeecccccCCcccchhchhhhHH--HHHHHhhcccCCCcccCCCCCCC
Q 037488 581 VMKVVDAHLLSQEDKHFVIKGQCVS--FVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .....+..... ++.+++.+||+.||++||++.|+
T Consensus 126 ~-------------~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~l 162 (176)
T smart00750 126 P-------------RDRSNLESVSAARSFADFMRVCASRLPQRREAANHY 162 (176)
T ss_pred c-------------cccccHHHHHhhhhHHHHHHHHHhcccccccCHHHH
Confidence 0 00001112222 58999999999999999998764
|
It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features |
| >KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-17 Score=161.98 Aligned_cols=134 Identities=21% Similarity=0.191 Sum_probs=99.2
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccC------CCcceeeeeccCCC
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRH------RNLIKIISSCSNDD 496 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h------~niv~l~~~~~~~~ 496 (628)
.-...|.+....|+|=|++|.+|.. ..|+.||||+|..... ..+.=.+|+++|++|.. -+.++++-.|....
T Consensus 429 ~LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~-M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hkn 507 (752)
T KOG0670|consen 429 LLDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEV-MHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKN 507 (752)
T ss_pred hhcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchH-HhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcc
Confidence 3467888889999999999999987 4588999999975432 22334678888888742 24444433322211
Q ss_pred c---------------------------------------------------------------------cccccccccc
Q 037488 497 F---------------------------------------------------------------------KADFGMAKPL 507 (628)
Q Consensus 497 ~---------------------------------------------------------------------~~DFGla~~~ 507 (628)
. .||||-|-..
T Consensus 508 HLClVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~ 587 (752)
T KOG0670|consen 508 HLCLVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNESKNILKLCDFGSASFA 587 (752)
T ss_pred eeEEEehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccCcceeeeccCcccccc
Confidence 0 1699999865
Q ss_pred cccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcc
Q 037488 508 LKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEI 562 (628)
Q Consensus 508 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~ 562 (628)
.... .+-+..+..|.|||++.|-+|+...|+||.||.|||+.||+.-|.+.
T Consensus 588 ~ene----itPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~ 638 (752)
T KOG0670|consen 588 SENE----ITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGR 638 (752)
T ss_pred cccc----ccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCC
Confidence 4332 13345677899999999999999999999999999999999988764
|
|
| >KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-16 Score=154.34 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=55.2
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhccc-----C---CCcceeeeecc
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIR-----H---RNLIKIISSCS 493 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h---~niv~l~~~~~ 493 (628)
..++|.+.+.+|=|.|++||+|.+ ...+.||+|+.+.. ....+....||++|++++ | ..||+|+++|.
T Consensus 76 ~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA-qhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~Fk 152 (590)
T KOG1290|consen 76 NGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA-QHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFK 152 (590)
T ss_pred cCceEEEEEeccccccceeEEEeeccCCeEEEEEEEehh-hHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccce
Confidence 357889999999999999999987 67889999999743 234566789999999995 2 36899998764
|
|
| >KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.8e-17 Score=156.06 Aligned_cols=205 Identities=21% Similarity=0.264 Sum_probs=134.5
Q ss_pred HHHhhcCCCcccccccCCccEEEEEEe-c---CCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCC
Q 037488 422 LFQATNGFSENNLIDRGGIGYVYKRRI-H---YGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDD 496 (628)
Q Consensus 422 l~~~~~~~~~~~~ig~G~~g~V~~~~~-~---~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 496 (628)
.......|...+.||+|+|++||++.. . ....||+|.+..... ..+...|++.|..+ -+.||+++.+++..++
T Consensus 31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~--p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd 108 (418)
T KOG1167|consen 31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS--PSRILNELEMLYRLGGSDNIIKLNGCFRNND 108 (418)
T ss_pred hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccC--chHHHHHHHHHHHhccchhhhcchhhhccCC
Confidence 344567788899999999999999975 3 467899999976543 34578899999998 4889999888766554
Q ss_pred cc----------------------------------------------------------------ccccccccccccC-
Q 037488 497 FK----------------------------------------------------------------ADFGMAKPLLKED- 511 (628)
Q Consensus 497 ~~----------------------------------------------------------------~DFGla~~~~~~~- 511 (628)
.. .|||+|.......
T Consensus 109 ~v~ivlp~~~H~~f~~l~~~l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~ 188 (418)
T KOG1167|consen 109 QVAIVLPYFEHDRFRDLYRSLSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQ 188 (418)
T ss_pred eeEEEecccCccCHHHHHhcCCHHHHHHHHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhHHHHHhhhh
Confidence 32 3999997321000
Q ss_pred -----------c------------------------------ccccccccccccccCccccccCc-cCcccchhhHhHHH
Q 037488 512 -----------Q------------------------------SLIQTQTLATIGYMAPEYGREGR-VSTNGDVYSFGIML 549 (628)
Q Consensus 512 -----------~------------------------------~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl 549 (628)
. ........||+||+|||++...+ -++++||||.|||+
T Consensus 189 ~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~ 268 (418)
T KOG1167|consen 189 TEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVIL 268 (418)
T ss_pred hhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeecccee
Confidence 0 00011234999999999987654 68899999999999
Q ss_pred HHHhhCCCCCCcccCCCccHHHHHHhh----------cCCc--cce---------------eec-ccccC-Ccc-cchhc
Q 037488 550 IETFTRKKPTDEIFSGEMTLKHWVNDL----------LPIS--VMK---------------VVD-AHLLS-QED-KHFVI 599 (628)
Q Consensus 550 ~e~ltg~~p~~~~~~~~~~~~~~~~~~----------~~~~--~~~---------------~~~-~~~~~-~~~-~~~~~ 599 (628)
+.+++++.||.....+...+.+.+... .+.. ..+ -++ +.... ... .....
T Consensus 269 Lslls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~ 348 (418)
T KOG1167|consen 269 LSLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYKSRQPNTEREI 348 (418)
T ss_pred ehhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhcccccccceeecc
Confidence 999999999975444444343332110 0111 000 000 00000 000 01111
Q ss_pred hhh-hHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 600 KGQ-CVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 600 ~~~-~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.+ .+..+++++.+|+..||.+|.|++|+
T Consensus 349 ~~d~~~~~~~dlLdk~le~np~kRitAEeA 378 (418)
T KOG1167|consen 349 GSDVFPALLLDLLDKCLELNPQKRITAEDA 378 (418)
T ss_pred ccccccHHHHHHHHHHccCChhhcccHHHH
Confidence 222 34579999999999999999998763
|
|
| >KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-16 Score=158.95 Aligned_cols=133 Identities=20% Similarity=0.300 Sum_probs=104.1
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch--------hHHHHHHHHHHHhhccc---CCCcceeeee
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR--------EAFKNFDIECDMMKHIR---HRNLIKIISS 491 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~---h~niv~l~~~ 491 (628)
..-..|...+.+|+|+||.|+.|.+ .....|+||.+.+.+- +..-..-.||+||+.++ |+||++++++
T Consensus 558 ~k~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdf 637 (772)
T KOG1152|consen 558 KKFSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDF 637 (772)
T ss_pred cccccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhhe
Confidence 3445688899999999999999987 4577899998864321 11123567999999997 9999999999
Q ss_pred ccCCCcc-------------------------------------------------------------------cccccc
Q 037488 492 CSNDDFK-------------------------------------------------------------------ADFGMA 504 (628)
Q Consensus 492 ~~~~~~~-------------------------------------------------------------------~DFGla 504 (628)
|++++++ .|||-|
T Consensus 638 FEddd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~g~~klidfgsa 717 (772)
T KOG1152|consen 638 FEDDDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGSA 717 (772)
T ss_pred eecCCeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhccccccccCceecccccccEEEecCCeEEEeeccch
Confidence 9987754 267766
Q ss_pred ccccccCcccccccccccccccCccccccCcc-CcccchhhHhHHHHHHhhCCCCCC
Q 037488 505 KPLLKEDQSLIQTQTLATIGYMAPEYGREGRV-STNGDVYSFGIMLIETFTRKKPTD 560 (628)
Q Consensus 505 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DVwS~Gvvl~e~ltg~~p~~ 560 (628)
..... .....++||.+|.|||++.|.+| +..-|||++|++||-++..+-||-
T Consensus 718 a~~ks----gpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy 770 (772)
T KOG1152|consen 718 AYTKS----GPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY 770 (772)
T ss_pred hhhcC----CCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence 53221 22356789999999999999998 556799999999999999988874
|
|
| >KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-15 Score=152.86 Aligned_cols=141 Identities=21% Similarity=0.263 Sum_probs=111.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
..-|..++.||-|+||.|.+++. .+...+|.|.+.+.+ ..+....+.|-.||...+.+=||+|+-.|.+.+..
T Consensus 628 KSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFV 707 (1034)
T KOG0608|consen 628 KSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFV 707 (1034)
T ss_pred ccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEE
Confidence 45678889999999999999875 667889999987644 33455678899999999999999998777665432
Q ss_pred ---------------------------------------------------------------ccccccccccccCc---
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQ--- 512 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~--- 512 (628)
.|||++..+.-.+.
T Consensus 708 MdYIPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskY 787 (1034)
T KOG0608|consen 708 MDYIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKY 787 (1034)
T ss_pred EeccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccCCceeeeeccccccceecccccc
Confidence 39999975521110
Q ss_pred -------------------------------------ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhC
Q 037488 513 -------------------------------------SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR 555 (628)
Q Consensus 513 -------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg 555 (628)
.......+||+.|+|||++....|+..+|.||.|||||||+.|
T Consensus 788 Yq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g 867 (1034)
T KOG0608|consen 788 YQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVG 867 (1034)
T ss_pred ccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhC
Confidence 0011234699999999999999999999999999999999999
Q ss_pred CCCCCcccCCC
Q 037488 556 KKPTDEIFSGE 566 (628)
Q Consensus 556 ~~p~~~~~~~~ 566 (628)
++||-+..+++
T Consensus 868 ~~pf~~~tp~~ 878 (1034)
T KOG0608|consen 868 QPPFLADTPGE 878 (1034)
T ss_pred CCCccCCCCCc
Confidence 99998766654
|
|
| >smart00221 STYKc Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-15 Score=141.60 Aligned_cols=132 Identities=26% Similarity=0.374 Sum_probs=103.7
Q ss_pred CCcccccccCCccEEEEEEec-CCcEEEEEEeeccchh-HHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--------
Q 037488 429 FSENNLIDRGGIGYVYKRRIH-YGMEVAVKVFDLQYRE-AFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-------- 498 (628)
|...+.||+|++|.||++... +++.+|+|.+...... ..+.+.+|++.+++++|+|++++++++...+..
T Consensus 1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~ 80 (225)
T smart00221 1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCE 80 (225)
T ss_pred CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccC
Confidence 456678999999999999875 4899999999765444 567889999999999999999998876532110
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||.+........ ......
T Consensus 81 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~-~~~~~~ 159 (225)
T smart00221 81 GGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLA-ALLKTV 159 (225)
T ss_pred CCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCccc-ccccce
Confidence 38888776543320 011335
Q ss_pred cccccccCcccc-ccCccCcccchhhHhHHHHHHhhCCCCCCc
Q 037488 520 LATIGYMAPEYG-REGRVSTNGDVYSFGIMLIETFTRKKPTDE 561 (628)
Q Consensus 520 ~gt~~y~aPE~~-~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~ 561 (628)
.++..|++||.. ....++.++||||||++++||++|+.||..
T Consensus 160 ~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~ 202 (225)
T smart00221 160 KGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG 202 (225)
T ss_pred eccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence 688899999998 666788899999999999999999999954
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. |
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-15 Score=136.74 Aligned_cols=176 Identities=20% Similarity=0.328 Sum_probs=118.8
Q ss_pred cccccCCccEEEEEEecCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------------
Q 037488 433 NLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------------ 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------------ 498 (628)
-.+.+...|..|+|+++ |.-+++|+++... .+..+.|..|.-.++-..||||+.++|.|......
T Consensus 196 tkl~e~hsgelwrgrwq-gndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gsl 274 (448)
T KOG0195|consen 196 TKLAESHSGELWRGRWQ-GNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGSL 274 (448)
T ss_pred hhhccCCCccccccccc-CcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchHH
Confidence 35788899999999997 4456678776432 33456788999999999999999999999764321
Q ss_pred -----------cccc--------ccccc---------------------cccC-----------cccccccccccccccC
Q 037488 499 -----------ADFG--------MAKPL---------------------LKED-----------QSLIQTQTLATIGYMA 527 (628)
Q Consensus 499 -----------~DFG--------la~~~---------------------~~~~-----------~~~~~~~~~gt~~y~a 527 (628)
.|-+ +|+.+ ..++ ......+..-.+.||+
T Consensus 275 ynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~lns~hvmidedltarismad~kfsfqe~gr~y~pawms 354 (448)
T KOG0195|consen 275 YNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARISMADTKFSFQEVGRAYSPAWMS 354 (448)
T ss_pred HHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhheecccceeeeeccccccCcccCC
Confidence 0100 01100 0000 0000112234678999
Q ss_pred ccccccCccC---cccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhH
Q 037488 528 PEYGREGRVS---TNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCV 604 (628)
Q Consensus 528 PE~~~~~~~~---~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (628)
||.+...+-+ ..+|+|||.+++||+.|++.||.+..+-+.-++.. ...-+..+|+..+
T Consensus 355 pealqrkped~n~raadmwsfaillwel~trevpfadlspmecgmkia-------------------leglrv~ippgis 415 (448)
T KOG0195|consen 355 PEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGMKIA-------------------LEGLRVHIPPGIS 415 (448)
T ss_pred HHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhhhhh-------------------hccccccCCCCcc
Confidence 9999877643 47899999999999999999998755433222111 1112334556667
Q ss_pred HHHHHHhhcccCCCcccCCCCCCC
Q 037488 605 SFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 605 ~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.-+.+|+.-|+..||.+||.++.|
T Consensus 416 ~hm~klm~icmnedpgkrpkfdmi 439 (448)
T KOG0195|consen 416 RHMNKLMNICMNEDPGKRPKFDMI 439 (448)
T ss_pred HHHHHHHHHHhcCCCCcCCCccee
Confidence 779999999999999999998754
|
|
| >cd00180 PKc Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-14 Score=134.31 Aligned_cols=140 Identities=30% Similarity=0.488 Sum_probs=107.4
Q ss_pred cccCCccEEEEEEec-CCcEEEEEEeeccchh-HHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--------------
Q 037488 435 IDRGGIGYVYKRRIH-YGMEVAVKVFDLQYRE-AFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-------------- 498 (628)
Q Consensus 435 ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-------------- 498 (628)
||+|++|.||++... +++.+++|++...... ..+.+.+|++.++.++|++|+++++++......
T Consensus 1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~ 80 (215)
T cd00180 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD 80 (215)
T ss_pred CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence 689999999999974 5899999999765432 356789999999999999999998876542110
Q ss_pred ------------------------------------------------------ccccccccccccCccccccccccccc
Q 037488 499 ------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLATIG 524 (628)
Q Consensus 499 ------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt~~ 524 (628)
+|||.+........ ......+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~ 158 (215)
T cd00180 81 LLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS--LLKTIVGTPA 158 (215)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc--hhhcccCCCC
Confidence 15555543322110 1123458889
Q ss_pred ccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhh
Q 037488 525 YMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQC 603 (628)
Q Consensus 525 y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (628)
|++||..... .++.++|+|++|+++++|
T Consensus 159 ~~~pe~~~~~~~~~~~~D~~~lg~~~~~l--------------------------------------------------- 187 (215)
T cd00180 159 YMAPEVLLGKGYYSEKSDIWSLGVILYEL--------------------------------------------------- 187 (215)
T ss_pred ccChhHhcccCCCCchhhhHHHHHHHHHH---------------------------------------------------
Confidence 9999999887 789999999999999998
Q ss_pred HHHHHHHhhcccCCCcccCCCCCCC
Q 037488 604 VSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 604 ~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.++.+++.+|++.||++||++.++
T Consensus 188 -~~~~~~l~~~l~~~p~~R~~~~~l 211 (215)
T cd00180 188 -PELKDLIRKMLQKDPEKRPSAKEI 211 (215)
T ss_pred -HHHHHHHHHHhhCCcccCcCHHHH
Confidence 127789999999999999998653
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-15 Score=150.50 Aligned_cols=170 Identities=32% Similarity=0.532 Sum_probs=104.5
Q ss_pred CEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCC
Q 037488 186 QLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNF 265 (628)
Q Consensus 186 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~ 265 (628)
...||+.|++. .+|..++.+..|+.+.|.+|.+. .+|..+.++..|+.|+|+.|+++.+|..++.++ |+.|.+++|+
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence 34556666665 45666666666666666666665 455566666666666666666666666665553 5666666666
Q ss_pred CcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchh
Q 037488 266 FTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPIS 345 (628)
Q Consensus 266 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 345 (628)
++ .+|+.++.++.|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..++ |..||+++|++. .+|..
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchh
Confidence 65 45555566666666666666665 45555666666666666666665 4445555443 666666666665 45666
Q ss_pred hhcCCCCCEEEccCCcce
Q 037488 346 LEKLLDLKDINVSFNKLE 363 (628)
Q Consensus 346 ~~~l~~L~~l~l~~N~l~ 363 (628)
|.++..|++|-|.+|++.
T Consensus 230 fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhheeeeeccCCCC
Confidence 666666666666666665
|
|
| >KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-13 Score=125.86 Aligned_cols=179 Identities=17% Similarity=0.199 Sum_probs=116.7
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeec----------
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSC---------- 492 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~---------- 492 (628)
-.+.|.+.+.+|+|.||.+-.++. .+.+.+|+|.+..... ..+.|.+|-..--.+ .|.|||.-+++.
T Consensus 22 l~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~t-t~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~ 100 (378)
T KOG1345|consen 22 LEDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQT-TQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFV 100 (378)
T ss_pred hhhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchh-hHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEe
Confidence 356788899999999999999987 6788999999875433 346788888765555 588998765531
Q ss_pred ----cCCCc------------------------------------------------------cccccccccccccCccc
Q 037488 493 ----SNDDF------------------------------------------------------KADFGMAKPLLKEDQSL 514 (628)
Q Consensus 493 ----~~~~~------------------------------------------------------~~DFGla~~~~~~~~~~ 514 (628)
..++. .||||..+......
T Consensus 101 qE~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV--- 177 (378)
T KOG1345|consen 101 QEFAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTV--- 177 (378)
T ss_pred eccCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeeecccccccCcee---
Confidence 11111 15899887532211
Q ss_pred ccccccccccccCcccccc---Cc--cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccc
Q 037488 515 IQTQTLATIGYMAPEYGRE---GR--VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~---~~--~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (628)
...--+..|.|||.... ++ .++.+|||.||+++|..+||++||+.....+.....|....-.... .+
T Consensus 178 --~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~------~~ 249 (378)
T KOG1345|consen 178 --KYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNP------AL 249 (378)
T ss_pred --hhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCc------cC
Confidence 11124567899997653 33 5789999999999999999999998655555555555432211100 00
Q ss_pred cCCcccchhchhhhHHHHHHHhhcccCCCcccC
Q 037488 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEER 622 (628)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~R 622 (628)
+......++.+..+..+-+..+|++|
T Consensus 250 -------P~~F~~fs~~a~r~Fkk~lt~~~~dr 275 (378)
T KOG1345|consen 250 -------PKKFNPFSEKALRLFKKSLTPRFKDR 275 (378)
T ss_pred -------chhhcccCHHHHHHHHHhcCCccccc
Confidence 00111123446667777777777776
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-14 Score=146.39 Aligned_cols=174 Identities=29% Similarity=0.474 Sum_probs=87.1
Q ss_pred CCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEe
Q 037488 109 CKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLL 188 (628)
Q Consensus 109 l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 188 (628)
+.--...||+.|++. .+|..+..+. .|+.+.++.|.+. .+|..+.++..|+.|+|+.|++. .+|..+..|+ |+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~-~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFV-SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHH-HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 344455666666665 3444433332 3444445444444 34445555555555555555554 3444444442 4555
Q ss_pred ecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcC
Q 037488 189 NLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTG 268 (628)
Q Consensus 189 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~ 268 (628)
-+++|+++ .+|..++....|..||.+.|.+. .+|..++.+.+|+.|.+..|++..+|..+..| .|..||+|.|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKIS- 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCcee-
Confidence 55555554 44445555555555555555554 23444555555555555555555555544432 2455555555554
Q ss_pred CCCCcccCCccccEEEcCCCcCC
Q 037488 269 PLPLEIGNLKVLIKIDLSMNNFS 291 (628)
Q Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~ 291 (628)
.+|..|..|..|++|-|.+|.++
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC
Confidence 34445555555555555555554
|
|
| >KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-13 Score=137.20 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=57.0
Q ss_pred HHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeecc
Q 037488 422 LFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCS 493 (628)
Q Consensus 422 l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 493 (628)
..+-..+|.....+|.|+||+|+.+.. .++-.+|||++.... ........+|+..+.++.|++++++...+.
T Consensus 44 ~sr~a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkritlkn~e~s~~rvl~~~~s~a~feh~g~~~~~ha~~ 117 (516)
T KOG1033|consen 44 TSREANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRITLKNREESRSRVLREVSSLAEFEHPGIKRYFHAWY 117 (516)
T ss_pred hhhhhccccccccccccCccccCCccccccchhhHHHHhcccchhhhhhhhhccccchhhhcccchhhheecee
Confidence 445567888999999999999999886 445589999997643 344556788999999999999998876554
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.9e-13 Score=152.82 Aligned_cols=88 Identities=18% Similarity=0.217 Sum_probs=62.4
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
.+||++|||||++.+..|+.++|||||||+||||++|.+|+.... .....+..... .+.
T Consensus 175 ~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~---~~~~~~~~~~~--------~~~---------- 233 (793)
T PLN00181 175 AMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKS---RTMSSLRHRVL--------PPQ---------- 233 (793)
T ss_pred cCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHH---HHHHHHHHhhc--------Chh----------
Confidence 468999999999999999999999999999999999998875321 01111111000 000
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+..+++.+||+.||.+||+|.||
T Consensus 234 -~~~~~~~~~~~~~~~L~~~P~~Rps~~ei 262 (793)
T PLN00181 234 -ILLNWPKEASFCLWLLHPEPSCRPSMSEL 262 (793)
T ss_pred -hhhcCHHHHHHHHHhCCCChhhCcChHHH
Confidence 00112335688899999999999999874
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-12 Score=134.73 Aligned_cols=198 Identities=31% Similarity=0.491 Sum_probs=103.6
Q ss_pred EEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCC-CCCcEEEcccCCCCCCCchHHhccccccce
Q 037488 61 RLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNC-KYLKYFSFSNNSLDGILPRAIGNLSQSMEI 139 (628)
Q Consensus 61 ~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~ 139 (628)
.++++.|++... ......++.++.|++.+|.++.+++. ...+ ++|+.|++++|.+..+ |
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~------~~~~~~nL~~L~l~~N~i~~l-~------------ 156 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPL------IGLLKSNLKELDLSDNKIESL-P------------ 156 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCccc------cccchhhcccccccccchhhh-h------------
Confidence 567777766332 22344556777788888877776543 2223 2677777777777632 1
Q ss_pred eeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcC
Q 037488 140 FWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKL 219 (628)
Q Consensus 140 l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 219 (628)
..+..+++|+.|++++|++. .+|...+.++.|+.|++++|++. .+|........|++|++++|.+
T Consensus 157 -------------~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~ 221 (394)
T COG4886 157 -------------SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI 221 (394)
T ss_pred -------------hhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcc
Confidence 22334455555555555554 23333334455555555555554 3333333333455555555532
Q ss_pred cccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCcc
Q 037488 220 SGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPI 296 (628)
Q Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 296 (628)
. ..+..+.++.++..+.+.+|++..++..+..++++++|++++|.++.... ++.+.+++.|++++|.+...+|.
T Consensus 222 ~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 222 I-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred e-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 2 23344555555555555555555555555555555555555555553322 55555555555555555544443
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-12 Score=134.35 Aligned_cols=197 Identities=37% Similarity=0.552 Sum_probs=114.2
Q ss_pred EEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCC-CCCEEEccCCcCcccCCCCccCCCCCcEEEccCC
Q 037488 163 AIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLA-ALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSN 241 (628)
Q Consensus 163 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 241 (628)
.++++.|.+... ...+..++.+..|++.+|.+. .++.....+. +|+.|++++|++.. +|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence 355555554321 222344455666666666665 3344444443 66666666666653 3345566666666666666
Q ss_pred cCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChh
Q 037488 242 QITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDS 321 (628)
Q Consensus 242 ~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 321 (628)
++..+|.....+++|+.|++++|++.. +|........|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..+..
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccch
Confidence 666666555455666666666666653 3333344445666666666432 34445556666666666666665 33555
Q ss_pred hcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCC
Q 037488 322 IGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIP 367 (628)
Q Consensus 322 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p 367 (628)
++.+++++.|++++|.++.+.. +..+.+++.+++++|.+....|
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 6666677777777777765443 6666777777777776665444
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-12 Score=127.03 Aligned_cols=211 Identities=24% Similarity=0.260 Sum_probs=92.4
Q ss_pred cCCCCCCEEeccCCcccccCc-cccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhc
Q 037488 54 FNASKLSRLELQMNSFYGFIP-NTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGN 132 (628)
Q Consensus 54 ~~l~~L~~L~L~~N~l~~~~~-~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 132 (628)
.++.+|+.+.|.+........ .....+++++.|+|+.|-+....+- ..-...+++|+.|+++.|.+..........
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v---~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPV---LKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHH---HHHHHhcccchhcccccccccCCccccchh
Confidence 345566666666555543211 2344566666666666655543221 122345666666666666654211111111
Q ss_pred cccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCcc-ccccccCCCCCCEeecccCcccccCCccccCCCCCCE
Q 037488 133 LSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGS-IPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQ 211 (628)
Q Consensus 133 l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 211 (628)
.+++|+.|.|+.|.++-. +...+..+|+|+.|+|+.|.....-.....-+..|+.
T Consensus 195 ------------------------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 195 ------------------------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred ------------------------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 223444444444444310 0111223444555555554321111112223344555
Q ss_pred EEccCCcCcccCC-CCccCCCCCcEEEccCCcCCcC--CCC-----ccCCCCCcEEEcCCCCCcCCCC-CcccCCccccE
Q 037488 212 LDLGSNKLSGFVP-ASFGNLTNLRSLHLGSNQITSI--PST-----LLNLKDILYLNLSSNFFTGPLP-LEIGNLKVLIK 282 (628)
Q Consensus 212 L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l--p~~-----~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 282 (628)
|||++|++..... ...+.++.|+.|+++.+.+.++ |+. ....++|++|+++.|.+..... ..+..+++|+.
T Consensus 251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~ 330 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKH 330 (505)
T ss_pred ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhh
Confidence 5555555432210 2334455555555555555442 222 2234556666666665532111 12333445555
Q ss_pred EEcCCCcCC
Q 037488 283 IDLSMNNFS 291 (628)
Q Consensus 283 L~Ls~N~l~ 291 (628)
|....|.++
T Consensus 331 l~~~~n~ln 339 (505)
T KOG3207|consen 331 LRITLNYLN 339 (505)
T ss_pred hhccccccc
Confidence 555555554
|
|
| >KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.3e-12 Score=137.63 Aligned_cols=184 Identities=17% Similarity=0.144 Sum_probs=121.5
Q ss_pred ccccccCCccEEEEEEe-cCCcEEEEEEee----c-cchh-HHHHHHHHHHHhhcccCCCcceee-------------ee
Q 037488 432 NNLIDRGGIGYVYKRRI-HYGMEVAVKVFD----L-QYRE-AFKNFDIECDMMKHIRHRNLIKII-------------SS 491 (628)
Q Consensus 432 ~~~ig~G~~g~V~~~~~-~~~~~vavK~~~----~-~~~~-~~~~~~~E~~~l~~l~h~niv~l~-------------~~ 491 (628)
...+|+|++|.|+.... ......+.|.+. . .... ....+..|..+-..++|||++..+ ++
T Consensus 323 ~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~mE~ 402 (601)
T KOG0590|consen 323 GRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSMEY 402 (601)
T ss_pred cceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhhhc
Confidence 46799999998877654 334445555432 1 1111 122266788888899999987653 33
Q ss_pred ccCCCcc-----------------------------------------------------ccccccccccccCcc--ccc
Q 037488 492 CSNDDFK-----------------------------------------------------ADFGMAKPLLKEDQS--LIQ 516 (628)
Q Consensus 492 ~~~~~~~-----------------------------------------------------~DFGla~~~~~~~~~--~~~ 516 (628)
|.. |.. +|||.+......... ...
T Consensus 403 ~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~ 481 (601)
T KOG0590|consen 403 CPY-DLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNIHES 481 (601)
T ss_pred ccH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCCceEEeecCcceeeccCcchhhhhh
Confidence 333 211 499999866544333 455
Q ss_pred ccccccccccCccccccCccCcc-cchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTN-GDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~-~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
...+|+..|+|||++.+.+|++. +||||.|||+..|++|+.||......+..+.. .....-......
T Consensus 482 ~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~------------~~~~~~~~~~~~ 549 (601)
T KOG0590|consen 482 SGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKT------------NNYSDQRNIFEG 549 (601)
T ss_pred cCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccchhh------------hccccccccccC
Confidence 67789999999999999999885 79999999999999999999654333221100 000000111111
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
........+.+.+.++.++++.||.+|.|+.+|
T Consensus 550 ~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i 582 (601)
T KOG0590|consen 550 PNRLLSLLPRETRIIIYRMLQLDPTKRITIEQI 582 (601)
T ss_pred hHHHHHhchhhHHHHHHHHccCChhheecHHHH
Confidence 223344567789999999999999999998764
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-12 Score=118.57 Aligned_cols=136 Identities=25% Similarity=0.238 Sum_probs=107.2
Q ss_pred CccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCC
Q 037488 226 SFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQ 305 (628)
Q Consensus 226 ~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 305 (628)
.+..++.|+.|||++|.|+.+..+..-++.++.|++|+|.+... ..+..+++|+.||||+|.++ ....+-..+.+.+
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 34456778999999999999988888889999999999998743 23778889999999999887 4455555678889
Q ss_pred EEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccC-chhhhcCCCCCEEEccCCcceecC
Q 037488 306 YLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGII-PISLEKLLDLKDINVSFNKLEGEI 366 (628)
Q Consensus 306 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~l~l~~N~l~~~~ 366 (628)
.|.|++|.+.. -+.++.+.+|..||+++|+|.... -..+++++.|..+.|.+|++.+.+
T Consensus 356 tL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 356 TLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 99999998852 244777888999999999987543 245778888999999999887543
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-12 Score=132.67 Aligned_cols=194 Identities=28% Similarity=0.309 Sum_probs=82.4
Q ss_pred CCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhcccc
Q 037488 56 ASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQ 135 (628)
Q Consensus 56 l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 135 (628)
+..++.+++..|.+..+ -..+..+.+|..|++.+|.|+.+.. .+..+++|++|++++|.|+.+.+-. .+.
T Consensus 71 l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i~~------~l~~~~~L~~L~ls~N~I~~i~~l~--~l~- 140 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKIEN------LLSSLVNLQVLDLSFNKITKLEGLS--TLT- 140 (414)
T ss_pred hHhHHhhccchhhhhhh-hcccccccceeeeeccccchhhccc------chhhhhcchheeccccccccccchh--hcc-
Confidence 44444455555555431 2234555555555555555554321 0344555666666666555332211 111
Q ss_pred ccceeeccCCcccccCCccccCCCCCCEEEccCCcCCcccc-ccccCCCCCCEeecccCcccccCCccccCCCCCCEEEc
Q 037488 136 SMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIP-IALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDL 214 (628)
Q Consensus 136 ~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 214 (628)
.|+.|++.+|.|... ..+..+++|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++
T Consensus 141 ~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l 215 (414)
T KOG0531|consen 141 LLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSL 215 (414)
T ss_pred chhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhc
Confidence 122222222222211 122234555555555555543222 1 24445555555555555421 22333333333445
Q ss_pred cCCcCcccCCCCccCCC--CCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCC
Q 037488 215 GSNKLSGFVPASFGNLT--NLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFF 266 (628)
Q Consensus 215 ~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l 266 (628)
..|.++..-+ +..+. .|+.+++++|.+..++..+..+..+..|++.+|++
T Consensus 216 ~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 216 LDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred ccccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhccc
Confidence 5555443211 11111 14555555555554443333444444444444443
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.6e-12 Score=121.98 Aligned_cols=208 Identities=22% Similarity=0.273 Sum_probs=127.5
Q ss_pred CCCCCCEEEccCCcceecCC--ccccCCCCCCEEeccCCcccccCc--cccCCCCCCCEEEccCccccCCCCCCcccccc
Q 037488 31 QLQNLEELLLWGNNFSGTIP--SFIFNASKLSRLELQMNSFYGFIP--NTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSL 106 (628)
Q Consensus 31 ~l~~L~~L~ls~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~~--~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 106 (628)
++.+|++..|.+..... .+ .....+++++.|||+.|-+....+ .....|++|+.|+|+.|++........ -
T Consensus 119 n~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~----~ 193 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT----T 193 (505)
T ss_pred hHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc----h
Confidence 36778888888887753 33 356789999999999998876543 235689999999999999986543321 1
Q ss_pred cCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCC
Q 037488 107 SNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQ 186 (628)
Q Consensus 107 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 186 (628)
..+++|+.|.|+.|.++-- .+..+ ...+++|+.|+|..|........+..-+..|+
T Consensus 194 ~~l~~lK~L~l~~CGls~k---~V~~~---------------------~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWK---DVQWI---------------------LLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hhhhhhheEEeccCCCCHH---HHHHH---------------------HHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 2578899999999988721 11111 11234455555555532222222233344555
Q ss_pred EeecccCcccccCC--ccccCCCCCCEEEccCCcCcccC-CCC-----ccCCCCCcEEEccCCcCCcCCC--CccCCCCC
Q 037488 187 LLNLEYNQLEGSIP--DDLCRLAALFQLDLGSNKLSGFV-PAS-----FGNLTNLRSLHLGSNQITSIPS--TLLNLKDI 256 (628)
Q Consensus 187 ~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~-~~~-----~~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L 256 (628)
.|||++|++.. .+ .....++.|+.|+++.+.+..+. |+. ...+++|++|+++.|++..+++ .+..+.+|
T Consensus 250 ~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nl 328 (505)
T KOG3207|consen 250 ELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENL 328 (505)
T ss_pred hccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchh
Confidence 55555555542 12 22345555555666555554331 222 2455677888888887766553 44556777
Q ss_pred cEEEcCCCCCcC
Q 037488 257 LYLNLSSNFFTG 268 (628)
Q Consensus 257 ~~L~l~~n~l~~ 268 (628)
+.|.+..|.++.
T Consensus 329 k~l~~~~n~ln~ 340 (505)
T KOG3207|consen 329 KHLRITLNYLNK 340 (505)
T ss_pred hhhhcccccccc
Confidence 777777777763
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.8e-12 Score=115.57 Aligned_cols=133 Identities=27% Similarity=0.291 Sum_probs=98.5
Q ss_pred ccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcE
Q 037488 179 LGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILY 258 (628)
Q Consensus 179 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~ 258 (628)
....+.|+++||++|.|+ .+.+++.-.++++.|++++|.|... +.+..+++|+.|||++|.++++..+-..+.+.+.
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 344567778888888876 4556667777888888888888643 3477788888888888888887777677778888
Q ss_pred EEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCC-ccccCCCCCCCEEeCCCCcCcc
Q 037488 259 LNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVI-PITIGYLKDLQYLFLEYNRLQG 316 (628)
Q Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~n~~~~ 316 (628)
|.|+.|.+... ..+..+.+|..||+++|+|.... ...++.++.|+.+.|.+|.+.+
T Consensus 357 L~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 357 LKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 88888877532 34667778888888888876432 2356788888888888888874
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-10 Score=104.81 Aligned_cols=122 Identities=30% Similarity=0.339 Sum_probs=31.5
Q ss_pred CCcEEEccCCcCCcCCCCcc-CCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCC
Q 037488 232 NLRSLHLGSNQITSIPSTLL-NLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLE 310 (628)
Q Consensus 232 ~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 310 (628)
+++.|+|++|.|+.+. .+. .+.+|+.|++++|.++.. +.+..++.|++|++++|+++...+.....+++|++|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 3444444444444432 121 234444444444444422 123444455555555555543222111234555555555
Q ss_pred CCcCcccC-ChhhcCCCCCCEEECcCCcccccC---chhhhcCCCCCEEE
Q 037488 311 YNRLQGSI-PDSIGDLINLKSLDLSNNNLSGII---PISLEKLLDLKDIN 356 (628)
Q Consensus 311 ~n~~~~~~-~~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~l~ 356 (628)
+|+|...- -..+..+++|+.|++.+|.++... ...+..+++|+.||
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 55554211 133455666666666666665331 12355667777665
|
|
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-11 Score=125.45 Aligned_cols=158 Identities=23% Similarity=0.282 Sum_probs=110.4
Q ss_pred ccccCCccEEEEEEe----cCCcEEEEEEeeccch--hHHHHHHHHHHHhhccc-CCCcceeeeeccCCCcc--------
Q 037488 434 LIDRGGIGYVYKRRI----HYGMEVAVKVFDLQYR--EAFKNFDIECDMMKHIR-HRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 434 ~ig~G~~g~V~~~~~----~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~-------- 498 (628)
.+|+|.||.|+.++. ..|..+|.|+.+.... ........|-.++..++ ||.+|++.-.+..+...
T Consensus 1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~r 80 (612)
T KOG0603|consen 1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLR 80 (612)
T ss_pred CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcc
Confidence 369999999998542 3477899998865321 11124556788888887 99999987655432110
Q ss_pred ----------------------------------------------------------ccccccccccccCccccccccc
Q 037488 499 ----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTL 520 (628)
Q Consensus 499 ----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~ 520 (628)
.|||+++...... ..+
T Consensus 81 gg~lft~l~~~~~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~------~~c 154 (612)
T KOG0603|consen 81 GGDLFTRLSKEVMFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEK------IAC 154 (612)
T ss_pred cchhhhccccCCchHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhhHhHhhh------hcc
Confidence 2899988765432 238
Q ss_pred ccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhch
Q 037488 521 ATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600 (628)
Q Consensus 521 gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (628)
||.-|||||++. .+...+|.||||++++||+||..||.. ....... .. ....|
T Consensus 155 gt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~-----~~~~~Il----------------~~----~~~~p 207 (612)
T KOG0603|consen 155 GTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG-----DTMKRIL----------------KA----ELEMP 207 (612)
T ss_pred cchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch-----HHHHHHh----------------hh----ccCCc
Confidence 999999999998 577889999999999999999999965 1111111 10 12334
Q ss_pred hhhHHHHHHHhhcccCCCcccCCC
Q 037488 601 GQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 601 ~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
.+....+.+++..++.++|..|--
T Consensus 208 ~~l~~~a~~~~~~l~~r~p~nrLg 231 (612)
T KOG0603|consen 208 RELSAEARSLFRQLFKRNPENRLG 231 (612)
T ss_pred hhhhHHHHHHHHHHHhhCHHHHhc
Confidence 455667888888888888887754
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3e-10 Score=124.36 Aligned_cols=118 Identities=35% Similarity=0.572 Sum_probs=100.5
Q ss_pred cccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEcc
Q 037488 279 VLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVS 358 (628)
Q Consensus 279 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~ 358 (628)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceecCCCCCc--ccccccccccCCCcccCCCCCCCCCcc
Q 037488 359 FNKLEGEIPREGS--FRNFLAESFKGNELLCGMPNLQVPPCR 398 (628)
Q Consensus 359 ~N~l~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (628)
+|+++|.+|.... ........+.+|+.+|+.|.+ ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l--~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGL--RACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCC--CCCc
Confidence 9999999886422 223445677899999987653 4563
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.7e-11 Score=105.54 Aligned_cols=127 Identities=32% Similarity=0.318 Sum_probs=34.8
Q ss_pred cCCCCCCEeecccCcccccCCcccc-CCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCcc-CCCCCc
Q 037488 180 GKLQKLQLLNLEYNQLEGSIPDDLC-RLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLL-NLKDIL 257 (628)
Q Consensus 180 ~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~ 257 (628)
.+..++++|+|++|+|+.+ +.+. .+.+|+.|++++|.|+.. +.+..+++|++|++++|+|++++..+. .+++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3444566666666666532 2333 355666666666666543 245556666666666666666544332 355566
Q ss_pred EEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccC---ChhhcCCCCCCEEEC
Q 037488 258 YLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSI---PDSIGDLINLKSLDL 333 (628)
Q Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~l 333 (628)
.|++++|+|...-. -..+..+++|+.|++.+|+++... .-.+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~-----------------------l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNE-----------------------LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCC-----------------------CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHH-----------------------hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 66666655543111 012334555566666666554221 113455667776653
|
|
| >KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.7e-11 Score=128.98 Aligned_cols=181 Identities=19% Similarity=0.163 Sum_probs=108.5
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHH-------HHH--HH--------------HHHhhc
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFK-------NFD--IE--------------CDMMKH 479 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~-------~~~--~E--------------~~~l~~ 479 (628)
.+..+|..++.|..|+||.||.+++ .+.+.+|.|. ..+...-+. -|. .+ |..+..
T Consensus 80 p~e~df~~IklisngAygavylvrh~~trqrfa~ki-Nkq~lilRnilt~a~npfvvgDc~tllk~~g~lPvdmvla~Ey 158 (1205)
T KOG0606|consen 80 PSESDFNTIKLISNGAYGAVYLVRHKETRQRFAMKI-NKQNLILRNILTFAGNPFVVGDCATLLKNIGPLPVDMVLAVEY 158 (1205)
T ss_pred CCccccceeEeeccCCCCceeeeeccccccchhhcc-cccchhhhccccccCCcceechhhhhcccCCCCcchhhHHhHh
Confidence 4567899999999999999999986 4578888843 221110000 000 01 122222
Q ss_pred ccCCCccee-------eeeccCCCccccccccccccccCc-------------ccccccccccccccCccccccCccCcc
Q 037488 480 IRHRNLIKI-------ISSCSNDDFKADFGMAKPLLKEDQ-------------SLIQTQTLATIGYMAPEYGREGRVSTN 539 (628)
Q Consensus 480 l~h~niv~l-------~~~~~~~~~~~DFGla~~~~~~~~-------------~~~~~~~~gt~~y~aPE~~~~~~~~~~ 539 (628)
++|.-||.- +---.+.....|||+.+....... .....+.+||+.|+|||++....|+..
T Consensus 159 lh~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkp 238 (1205)
T KOG0606|consen 159 LHSYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKP 238 (1205)
T ss_pred hccCCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhhhhccCCC
Confidence 223222210 000000112259999975321110 011234579999999999999999999
Q ss_pred cchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCc
Q 037488 540 GDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESP 619 (628)
Q Consensus 540 ~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp 619 (628)
+|.|++|+|+||.+.|+.||.+..+++ .+..++ . |.+...+. ....++++++++.+.|+.+|
T Consensus 239 vdwwamGiIlyeFLVgcvpffGdtpee-lfg~vi----s-------d~i~wpE~------dea~p~Ea~dli~~LL~qnp 300 (1205)
T KOG0606|consen 239 VDWWAMGIILYEFLVGCVPFFGDTPEE-LFGQVI----S-------DDIEWPEE------DEALPPEAQDLIEQLLRQNP 300 (1205)
T ss_pred ccHHHHHHHHHHHheeeeeccCCCHHH-HHhhhh----h-------hhcccccc------CcCCCHHHHHHHHHHHHhCh
Confidence 999999999999999999998754322 111111 1 11111111 11235679999999999999
Q ss_pred ccCC
Q 037488 620 EERV 623 (628)
Q Consensus 620 ~~Rp 623 (628)
..|-
T Consensus 301 ~~Rl 304 (1205)
T KOG0606|consen 301 LCRL 304 (1205)
T ss_pred Hhhc
Confidence 9885
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-10 Score=123.73 Aligned_cols=112 Identities=38% Similarity=0.543 Sum_probs=103.3
Q ss_pred CcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcC
Q 037488 256 ILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSN 335 (628)
Q Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 335 (628)
++.|+|++|.+++.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|+.++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCchhhhcC-CCCCEEEccCCcceecCC
Q 037488 336 NNLSGIIPISLEKL-LDLKDINVSFNKLEGEIP 367 (628)
Q Consensus 336 N~l~~~~~~~~~~l-~~L~~l~l~~N~l~~~~p 367 (628)
|.+++.+|..+..+ .++..+++++|...+.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999888764 467889999998665544
|
|
| >COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=110.92 Aligned_cols=186 Identities=23% Similarity=0.305 Sum_probs=125.2
Q ss_pred CCcccccccCCccEEEEEEecCCcEEEEEEeeccch---hHHHHHHHHHHHhhcccCC-CcceeeeeccCCCc-------
Q 037488 429 FSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYR---EAFKNFDIECDMMKHIRHR-NLIKIISSCSNDDF------- 497 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~-niv~l~~~~~~~~~------- 497 (628)
|.....+|.|+||.||++... ..+|+|.+..... .....+.+|+.+++.+.|+ +|+++.+++.....
T Consensus 2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (384)
T COG0515 2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY 79 (384)
T ss_pred ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence 566788999999999999876 7899999875432 2467899999999999988 79998776533210
Q ss_pred ------------------c---------------------------------------------ccccccccccccCccc
Q 037488 498 ------------------K---------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 498 ------------------~---------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
. +|||.++.........
T Consensus 80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~ 159 (384)
T COG0515 80 VDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTS 159 (384)
T ss_pred CCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCccc
Confidence 0 3999998543332111
Q ss_pred ----ccccccccccccCcccccc---CccCcccchhhHhHHHHHHhhCCCCCCcccCC--CccHHHHHHhhcCCccceee
Q 037488 515 ----IQTQTLATIGYMAPEYGRE---GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSG--EMTLKHWVNDLLPISVMKVV 585 (628)
Q Consensus 515 ----~~~~~~gt~~y~aPE~~~~---~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 585 (628)
.....+||..|+|||.+.+ ..++...|+||+|++++++++|..||...... ............. . ..
T Consensus 160 ~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~---~~ 235 (384)
T COG0515 160 SIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPT-P---SL 235 (384)
T ss_pred cccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCC-c---cc
Confidence 2355689999999999988 57899999999999999999999997543221 1111111111000 0 00
Q ss_pred cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 586 DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
..... ..........+.+++.+|+..+|..|.++.
T Consensus 236 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 270 (384)
T COG0515 236 ASPLS------PSNPELISKAASDLLKKLLAKDPKNRLSSS 270 (384)
T ss_pred ccccC------ccccchhhHHHHHHHHHHHhcCchhcCCHH
Confidence 00000 000011235688999999999999998764
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-11 Score=127.24 Aligned_cols=197 Identities=31% Similarity=0.346 Sum_probs=100.4
Q ss_pred CCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccC
Q 037488 78 GNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISN 157 (628)
Q Consensus 78 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~ 157 (628)
..+..++.+.+..|.|..+. ..+..+++|+.|++.+|.|..+... +..
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~------~~l~~~~~l~~l~l~~n~i~~i~~~--------------------------l~~ 116 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKIL------NHLSKLKSLEALDLYDNKIEKIENL--------------------------LSS 116 (414)
T ss_pred HHhHhHHhhccchhhhhhhh------cccccccceeeeeccccchhhcccc--------------------------hhh
Confidence 34556666667777666421 2245566677777777766543210 345
Q ss_pred CCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCC-CCccCCCCCcEE
Q 037488 158 LTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVP-ASFGNLTNLRSL 236 (628)
Q Consensus 158 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 236 (628)
+++|+.|++++|.|+...+ +..++.|+.|++++|.|... ..+..++.|+.+++++|.+....+ . ...+.+++.+
T Consensus 117 ~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l 191 (414)
T KOG0531|consen 117 LVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEEL 191 (414)
T ss_pred hhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHH
Confidence 5666666666666664332 44555566666666666532 344446666666666666654433 1 3555566666
Q ss_pred EccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCc--cccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcC
Q 037488 237 HLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLK--VLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRL 314 (628)
Q Consensus 237 ~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 314 (628)
++.+|.+..+.. +..+..+..+++..|.++..-+. ..+. .|+.+++++|.+.. .+..+..+..+..|++..|++
T Consensus 192 ~l~~n~i~~i~~-~~~~~~l~~~~l~~n~i~~~~~l--~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 192 DLGGNSIREIEG-LDLLKKLVLLSLLDNKISKLEGL--NELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred hccCCchhcccc-hHHHHHHHHhhcccccceeccCc--ccchhHHHHHHhcccCcccc-ccccccccccccccchhhccc
Confidence 666666554421 22223333335555555432211 1111 24455555555442 112233344455555555544
Q ss_pred c
Q 037488 315 Q 315 (628)
Q Consensus 315 ~ 315 (628)
.
T Consensus 268 ~ 268 (414)
T KOG0531|consen 268 S 268 (414)
T ss_pred c
Confidence 3
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-10 Score=84.07 Aligned_cols=61 Identities=36% Similarity=0.486 Sum_probs=49.8
Q ss_pred CCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccc
Q 037488 33 QNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYL 93 (628)
Q Consensus 33 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l 93 (628)
++|++|++++|+++.+.+..|.++++|++|++++|+++.+.+++|.++++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677888888888877777888888888888888888888888888888888888888864
|
... |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-09 Score=110.86 Aligned_cols=64 Identities=17% Similarity=0.098 Sum_probs=51.7
Q ss_pred HhhcCCCcccccccCCccEEEEEEec--CCcEEEEEEeecc-----chhHHHHHHHHHHHhhcccCCCcce
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRIH--YGMEVAVKVFDLQ-----YREAFKNFDIECDMMKHIRHRNLIK 487 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~~--~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~ 487 (628)
...++|...+.||+|+||+||+|+.. +++.||||++... .....+.|.+|++++++++|+|+|.
T Consensus 15 ~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~ 85 (365)
T PRK09188 15 ALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVP 85 (365)
T ss_pred cccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCc
Confidence 34577999999999999999999863 5788899987532 1223566899999999999999984
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.9e-11 Score=113.69 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=21.7
Q ss_pred CCCCCEEeCCCCcCccc----CChhhcCCCCCCEEECcCCcc
Q 037488 301 LKDLQYLFLEYNRLQGS----IPDSIGDLINLKSLDLSNNNL 338 (628)
Q Consensus 301 l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~N~l 338 (628)
.+.|+.|.+.+|.|+.. +-..+...+.|..|+|++|++
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 45566666666665531 122234456677777777777
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-11 Score=113.89 Aligned_cols=246 Identities=22% Similarity=0.286 Sum_probs=145.8
Q ss_pred CCCCCEEEccCCcceec----CCccccCCCCCCEEeccCCcccc----cCc-------cccCCCCCCCEEEccCccccCC
Q 037488 32 LQNLEELLLWGNNFSGT----IPSFIFNASKLSRLELQMNSFYG----FIP-------NTFGNLRNLNRLGLNDNYLTSS 96 (628)
Q Consensus 32 l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~----~~~-------~~f~~l~~L~~L~L~~N~l~~~ 96 (628)
...++.++||+|.+... +...+.+.++|+..++++ -++| -+| .++...++|++|+||+|.+..-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 45677778888877532 223355667777777763 2222 122 2344556788888888876432
Q ss_pred CCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCcc--
Q 037488 97 TPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGS-- 174 (628)
Q Consensus 97 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-- 174 (628)
... .+-.-++++..|++|.|.+|.+...--..++. .|..+ +.+ .....-+.|+++..+.|++...
T Consensus 108 g~~-~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l--~~~-------kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 108 GIR-GLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFEL--AVN-------KKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred chH-HHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHH--HHH-------hccCCCcceEEEEeeccccccccH
Confidence 110 01122455777888888887765322122111 11111 111 1223446788888888887532
Q ss_pred --ccccccCCCCCCEeecccCccccc----CCccccCCCCCCEEEccCCcCccc----CCCCccCCCCCcEEEccCCcCC
Q 037488 175 --IPIALGKLQKLQLLNLEYNQLEGS----IPDDLCRLAALFQLDLGSNKLSGF----VPASFGNLTNLRSLHLGSNQIT 244 (628)
Q Consensus 175 --~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 244 (628)
+...|...+.|+.+.++.|.|... +...+..+++|+.|||.+|-++.. +...+..+++|+.|++++|.+.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 223456667888888888877521 123467788888888888887532 3445677788888888888776
Q ss_pred cC-----CCCcc-CCCCCcEEEcCCCCCcCC----CCCcccCCccccEEEcCCCcCC
Q 037488 245 SI-----PSTLL-NLKDILYLNLSSNFFTGP----LPLEIGNLKVLIKIDLSMNNFS 291 (628)
Q Consensus 245 ~l-----p~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 291 (628)
.= -..+. ..++|+.|.+.+|.++.. +...+...+.|..|+|++|.+.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 41 11111 357888888888887632 1122445778888889998883
|
|
| >KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6e-10 Score=114.61 Aligned_cols=118 Identities=24% Similarity=0.314 Sum_probs=72.3
Q ss_pred ccccccccccccCcccccccccccccccCccccccCc-------cCcccchhhHhHHHHHHhhCCCCCCcccCCCcc--H
Q 037488 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR-------VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMT--L 569 (628)
Q Consensus 499 ~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-------~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~--~ 569 (628)
+|||+.................-..-|.|||.+.+.. .+.++||||||++++|+++.+.||+........ .
T Consensus 91 t~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~ei 170 (484)
T KOG1023|consen 91 TDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEI 170 (484)
T ss_pred chhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCccccccccCChHHH
Confidence 5999988653211111111222456799999988642 366799999999999999999999864333221 2
Q ss_pred HHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 570 KHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...++. .....+.|.+... .+..+++..++..||..+|++||++.+|
T Consensus 171 i~~~~~----~~~~~~rP~i~~~--------~e~~~~l~~l~~~cw~e~P~~rPs~~~i 217 (484)
T KOG1023|consen 171 ILRVKK----GGSNPFRPSIELL--------NELPPELLLLVARCWEEIPEKRPSIEQI 217 (484)
T ss_pred HHHHHh----cCCCCcCcchhhh--------hhcchHHHHHHHHhcccChhhCccHHHH
Confidence 222211 0011111111100 0234468999999999999999998754
|
|
| >KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.8e-09 Score=104.27 Aligned_cols=135 Identities=20% Similarity=0.270 Sum_probs=99.7
Q ss_pred CCCcccccccCCccEEEEEEecC--CcEEEEEEeeccchhHHHHHHHHHHHhhcccC----CCcceeeeecc-CCCcc--
Q 037488 428 GFSENNLIDRGGIGYVYKRRIHY--GMEVAVKVFDLQYREAFKNFDIECDMMKHIRH----RNLIKIISSCS-NDDFK-- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~~~--~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~l~~~~~-~~~~~-- 498 (628)
.|...+.||+|+||.||.|.... ...+|+|............+..|+.++..+.+ +++.++++... .+.+.
T Consensus 19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i 98 (322)
T KOG1164|consen 19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI 98 (322)
T ss_pred ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence 79999999999999999998743 35788888765433222257788998888863 46666666552 22110
Q ss_pred ----------------------------------------------------------------------ccccccc--c
Q 037488 499 ----------------------------------------------------------------------ADFGMAK--P 506 (628)
Q Consensus 499 ----------------------------------------------------------------------~DFGla~--~ 506 (628)
.|||+|+ .
T Consensus 99 VM~l~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~ 178 (322)
T KOG1164|consen 99 VMSLLGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFK 178 (322)
T ss_pred EEeccCccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCcccc
Confidence 3999999 4
Q ss_pred ccccCcc----c-c-cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcc
Q 037488 507 LLKEDQS----L-I-QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEI 562 (628)
Q Consensus 507 ~~~~~~~----~-~-~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~ 562 (628)
....... . . .....||..|.++....+.+.+.+-|+||++.++.|+..|..||...
T Consensus 179 ~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~ 240 (322)
T KOG1164|consen 179 YVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEAL 240 (322)
T ss_pred ccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccc
Confidence 3222211 0 1 12345999999999999999999999999999999999999999654
|
|
| >PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.1e-09 Score=101.20 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=50.9
Q ss_pred cccccccCcccccc--------CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 520 LATIGYMAPEYGRE--------GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 520 ~gt~~y~aPE~~~~--------~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
..+.+|.+||.... -.++.+.|.|++|+++|.|.+|+.||+...+.... +...
T Consensus 203 ~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~~~-----------------~~~f-- 263 (288)
T PF14531_consen 203 EFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSPEADP-----------------EWDF-- 263 (288)
T ss_dssp GS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGSTS-----------------GGGG--
T ss_pred CCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCCCccccc-----------------cccc--
Confidence 45678999997643 24799999999999999999999999754332110 0011
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEER 622 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~R 622 (628)
..-.+.|+.+++||..+|+.||++|
T Consensus 264 ------~~C~~~Pe~v~~LI~~lL~~~~~~R 288 (288)
T PF14531_consen 264 ------SRCRDMPEPVQFLIRGLLQRNPEDR 288 (288)
T ss_dssp ------TTSS---HHHHHHHHHHT-SSGGGS
T ss_pred ------hhcCCcCHHHHHHHHHHccCCcccC
Confidence 1111457779999999999999998
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.2e-10 Score=120.69 Aligned_cols=178 Identities=19% Similarity=0.163 Sum_probs=104.7
Q ss_pred CCCcccccccCCccEEEEEEecCCcEEEEEEeeccc-hhHHH---HHHHHHHHhhcccCCCcceeeeeccC---------
Q 037488 428 GFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY-REAFK---NFDIECDMMKHIRHRNLIKIISSCSN--------- 494 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~---~~~~E~~~l~~l~h~niv~l~~~~~~--------- 494 (628)
.|...+.+|.+.|=.|.+|+.+.|. |+||++-+.. .-..+ +-.+|++ .+..+|||.+++.-+-..
T Consensus 24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylvRq 101 (1431)
T KOG1240|consen 24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLVRQ 101 (1431)
T ss_pred ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHHHH
Confidence 5666688999999999999988787 8899985543 22233 3344555 556689999876432110
Q ss_pred ------------------------------------------CCcc--------------ccccccccc-cccCccc---
Q 037488 495 ------------------------------------------DDFK--------------ADFGMAKPL-LKEDQSL--- 514 (628)
Q Consensus 495 ------------------------------------------~~~~--------------~DFGla~~~-~~~~~~~--- 514 (628)
+|.+ +||.-=+.. .+.+...
T Consensus 102 yvkhnLyDRlSTRPFL~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~ 181 (1431)
T KOG1240|consen 102 YVKHNLYDRLSTRPFLVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPADFT 181 (1431)
T ss_pred HHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHcCccccccccceEEEeeechhhhhcccccCCccCCCCCcccce
Confidence 1100 366544432 1111110
Q ss_pred -ccccccccccccCccccccC----------c-cCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCcc
Q 037488 515 -IQTQTLATIGYMAPEYGREG----------R-VSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISV 581 (628)
Q Consensus 515 -~~~~~~gt~~y~aPE~~~~~----------~-~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~ 581 (628)
-..+..--..|+|||.+..+ . .+++.||||.|||++|+++ |++||.-. +........
T Consensus 182 fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LS--------QL~aYr~~~-- 251 (1431)
T KOG1240|consen 182 FFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLS--------QLLAYRSGN-- 251 (1431)
T ss_pred EEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHH--------HHHhHhccC--
Confidence 00111123469999987641 1 5788999999999999998 78888531 111000000
Q ss_pred ceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 582 MKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
....+..+..- ......+++..|++.||++|.+|++
T Consensus 252 ~~~~e~~Le~I----------ed~~~Rnlil~Mi~rdPs~RlSAed 287 (1431)
T KOG1240|consen 252 ADDPEQLLEKI----------EDVSLRNLILSMIQRDPSKRLSAED 287 (1431)
T ss_pred ccCHHHHHHhC----------cCccHHHHHHHHHccCchhccCHHH
Confidence 00000000000 0113778999999999999999865
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-09 Score=78.33 Aligned_cols=59 Identities=41% Similarity=0.616 Sum_probs=33.1
Q ss_pred CCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCc
Q 037488 184 KLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQ 242 (628)
Q Consensus 184 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (628)
+|++|++++|+++...+..|.++++|++|++++|+++.+.+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444555555555555555555555555555555555555555554
|
... |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.3e-09 Score=118.71 Aligned_cols=83 Identities=31% Similarity=0.400 Sum_probs=33.3
Q ss_pred ccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCC
Q 037488 106 LSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKL 185 (628)
Q Consensus 106 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 185 (628)
|..++.|++|||++|.--+.+|..++.+. +|++|+++...+. .+|..+.+|..|.+|++..+.-...+|.....|.+|
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li-~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELV-HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhh-hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence 34444455555544433333444444333 3334444433333 233344444444444444333322333333334444
Q ss_pred CEeec
Q 037488 186 QLLNL 190 (628)
Q Consensus 186 ~~L~L 190 (628)
++|.+
T Consensus 645 r~L~l 649 (889)
T KOG4658|consen 645 RVLRL 649 (889)
T ss_pred cEEEe
Confidence 44443
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.3e-09 Score=117.15 Aligned_cols=129 Identities=26% Similarity=0.308 Sum_probs=90.1
Q ss_pred CCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCC--CCCCCchHHhccccccceeeccCCcccccCCccccCC
Q 037488 81 RNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNS--LDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNL 158 (628)
Q Consensus 81 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l 158 (628)
...+...+-+|.+..+.. -..++.|++|-+..|. +..+....|..++ .|++|++++|.-.+.+|..++.|
T Consensus 523 ~~~rr~s~~~~~~~~~~~-------~~~~~~L~tLll~~n~~~l~~is~~ff~~m~-~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG-------SSENPKLRTLLLQRNSDWLLEISGEFFRSLP-LLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred hheeEEEEeccchhhccC-------CCCCCccceEEEeecchhhhhcCHHHHhhCc-ceEEEECCCCCccCcCChHHhhh
Confidence 456666666776655432 2344578888888876 5544444555554 68888888877777788888888
Q ss_pred CCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCc
Q 037488 159 TNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNK 218 (628)
Q Consensus 159 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 218 (628)
.+|+.|++++..+. .+|..+++|+.|.+|++..+.-...+|.....+.+|++|.+..-.
T Consensus 595 i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 595 VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 88888888888876 677778888888888888776555556666667888887765543
|
|
| >KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.6e-09 Score=95.16 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=99.2
Q ss_pred HHHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccC-CCcceeeeeccCCCc-
Q 037488 421 ELFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRH-RNLIKIISSCSNDDF- 497 (628)
Q Consensus 421 ~l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~- 497 (628)
+.....+.|...+.||.|+||.+|.|.. .+|..||||+-..... ..+...|.++.+.++| ..|-.+..|..++++
T Consensus 9 ~~~iv~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~--hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~yn 86 (341)
T KOG1163|consen 9 EELIVGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAK--HPQLLYESKVYRILQGGVGIPHIRHYGTEKDYN 86 (341)
T ss_pred hhheeccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCC--CcchhHHHHHHHHhccCCCCchhhhhccccccc
Confidence 3445567899999999999999999975 8899999998643221 1335567777776654 222222222222111
Q ss_pred --------------------------------------------------------------------cccccccccccc
Q 037488 498 --------------------------------------------------------------------KADFGMAKPLLK 509 (628)
Q Consensus 498 --------------------------------------------------------------------~~DFGla~~~~~ 509 (628)
.+|||+|+.+.+
T Consensus 87 vlVMdLLGPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d 166 (341)
T KOG1163|consen 87 VLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRD 166 (341)
T ss_pred eeeeeccCccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccccceEEEEeccchhhhcc
Confidence 149999998754
Q ss_pred cCcc-----cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccC
Q 037488 510 EDQS-----LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFS 564 (628)
Q Consensus 510 ~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~ 564 (628)
.... .......||.+|.+--...+.+-+.+-|.=|+|.||...-.|..||++...
T Consensus 167 ~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka 226 (341)
T KOG1163|consen 167 IRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKA 226 (341)
T ss_pred ccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccch
Confidence 3211 122334699999888777777778889999999999999999999987654
|
|
| >KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3e-08 Score=94.19 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=96.3
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhccc-CCCcceeeeeccCCCc-------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIR-HRNLIKIISSCSNDDF------- 497 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~------- 497 (628)
-.|.+.+.||+|+||+.+.|+. -+++.||||.-.... .+.+...|-+..+.|. -+.|-+.+-|-.++..
T Consensus 28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS--~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidL 105 (449)
T KOG1165|consen 28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKS--EAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDL 105 (449)
T ss_pred ccceeccccccCcceeeecccccccCceEEEEeccccC--CcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhh
Confidence 3678889999999999999974 679999999754321 2234555666666553 3455444332222110
Q ss_pred ----------------------------------------------------------------cccccccccccccCcc
Q 037488 498 ----------------------------------------------------------------KADFGMAKPLLKEDQS 513 (628)
Q Consensus 498 ----------------------------------------------------------------~~DFGla~~~~~~~~~ 513 (628)
..|||+|+.+.+....
T Consensus 106 LGPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~Tk 185 (449)
T KOG1165|consen 106 LGPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTK 185 (449)
T ss_pred hCcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhhcCcccc
Confidence 0399999988654321
Q ss_pred -----cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcc
Q 037488 514 -----LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEI 562 (628)
Q Consensus 514 -----~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~ 562 (628)
....+..||.+||+--...|.+-+.+-|.=|+|=|.+..+.|..||.+.
T Consensus 186 qHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGL 239 (449)
T KOG1165|consen 186 QHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGL 239 (449)
T ss_pred ccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccc
Confidence 1223456999999999988888999999999999999999999999864
|
|
| >KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.8e-09 Score=111.30 Aligned_cols=187 Identities=20% Similarity=0.228 Sum_probs=128.7
Q ss_pred hcCCCcccccccCCccEEEEEEe--cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhccc-CCCcceeeeeccCCCcc--
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI--HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIR-HRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~--~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~-- 498 (628)
...|.....||+|+|+.|-.... .....+|+|.+.... .....+...|..+-+.+. |+|++++++.....+..
T Consensus 19 ~~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~ 98 (601)
T KOG0590|consen 19 NSQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLL 98 (601)
T ss_pred cccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCccccc
Confidence 34566667799999999988765 334567777765432 333455566888888886 99999988754322110
Q ss_pred --------------------------------------------------------------------ccccccccccc-
Q 037488 499 --------------------------------------------------------------------ADFGMAKPLLK- 509 (628)
Q Consensus 499 --------------------------------------------------------------------~DFGla~~~~~- 509 (628)
+|||+|..+..
T Consensus 99 ~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~ 178 (601)
T KOG0590|consen 99 SLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDESGSALKIADFGLATAYRNK 178 (601)
T ss_pred ccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccccccCCCCCccchhccCCCcccCCCchhhcccccc
Confidence 49999998766
Q ss_pred cCcccccccccc-cccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecc
Q 037488 510 EDQSLIQTQTLA-TIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587 (628)
Q Consensus 510 ~~~~~~~~~~~g-t~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (628)
.+........+| ++-|+|||...+.. ..+..|+||.|+++.-|++|..|++...........|....
T Consensus 179 ~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~----------- 247 (601)
T KOG0590|consen 179 NGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNK----------- 247 (601)
T ss_pred CCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccccccceeecccc-----------
Confidence 444444555678 99999999998854 57889999999999999999999876433332222222110
Q ss_pred cccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+........++..+++..+|+.|.+.+++
T Consensus 248 -----~~~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~ 283 (601)
T KOG0590|consen 248 -----GRFTQLPWNSISDQAHDLLHKILKENPSNRLSIEEL 283 (601)
T ss_pred -----cccccCccccCChhhhhcccccccCCchhccccccc
Confidence 000112233445568899999999999999998764
|
|
| >KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.9e-08 Score=96.44 Aligned_cols=88 Identities=25% Similarity=0.334 Sum_probs=63.9
Q ss_pred cccccccCccccccCc-----c-CcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 520 LATIGYMAPEYGREGR-----V-STNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~-----~-~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
-|...-||||+....+ . -.|+|.|+.|.+.||+++..-||-. .+++.+ +..- -..
T Consensus 412 GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~--rGem~L----------------~~r~-Yqe 472 (598)
T KOG4158|consen 412 GGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYK--RGEMLL----------------DTRT-YQE 472 (598)
T ss_pred CCcceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccc--cchhee----------------chhh-hhh
Confidence 3788899999987532 2 3589999999999999999999854 222111 1111 112
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
..-+..++.|++.+.+++...++.||++|++.+
T Consensus 473 ~qLPalp~~vpp~~rqlV~~lL~r~pskRvsp~ 505 (598)
T KOG4158|consen 473 SQLPALPSRVPPVARQLVFDLLKRDPSKRVSPN 505 (598)
T ss_pred hhCCCCcccCChHHHHHHHHHhcCCccccCCcc
Confidence 233456677888899999999999999999864
|
|
| >PRK10359 lipopolysaccharide core biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.7e-08 Score=92.32 Aligned_cols=69 Identities=10% Similarity=-0.013 Sum_probs=53.9
Q ss_pred HhhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchh---HHHH------HHHHHHHhhcccCCCcceeeeecc
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYRE---AFKN------FDIECDMMKHIRHRNLIKIISSCS 493 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~---~~~~------~~~E~~~l~~l~h~niv~l~~~~~ 493 (628)
.-.++|...+.+|+|+||.||.+.. ++..+|||++...... .... +.+|++.+.++.||+|....+++.
T Consensus 28 ~l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~ 105 (232)
T PRK10359 28 FLSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYL 105 (232)
T ss_pred HhhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeee
Confidence 3478999999999999999999766 4678999999643222 2222 679999999999999988777643
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.2e-10 Score=114.55 Aligned_cols=128 Identities=31% Similarity=0.265 Sum_probs=94.3
Q ss_pred CCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCC
Q 037488 231 TNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLE 310 (628)
Q Consensus 231 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 310 (628)
..|.+.+.++|.+..+..++.-++.|+.|||++|+++... .+..++.|++|||++|.+..+......++. |+.|.++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 3577778888888888777777888888888888887543 677888888888888888765555555555 8888888
Q ss_pred CCcCcccCChhhcCCCCCCEEECcCCcccccCc-hhhhcCCCCCEEEccCCcce
Q 037488 311 YNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIP-ISLEKLLDLKDINVSFNKLE 363 (628)
Q Consensus 311 ~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~l~l~~N~l~ 363 (628)
+|.++. +- .+.++.+|+.||+++|-|.+... ..+..+..|+.|+|.+|++-
T Consensus 241 nN~l~t-L~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTT-LR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHh-hh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888863 22 36778888888888888765422 12345567788888888764
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.5e-09 Score=109.97 Aligned_cols=126 Identities=30% Similarity=0.314 Sum_probs=72.7
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEcc
Q 037488 160 NLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLG 239 (628)
Q Consensus 160 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 239 (628)
.|.+.+.+.|.+. ....++.-++.|+.|+|++|+++.. +.+..+++|+.|||+.|.+..++--....+. |+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4555666666665 4455566666667777777766643 2556666677777777766543222333333 6666666
Q ss_pred CCcCCcCCCCccCCCCCcEEEcCCCCCcCCCC-CcccCCccccEEEcCCCcC
Q 037488 240 SNQITSIPSTLLNLKDILYLNLSSNFFTGPLP-LEIGNLKVLIKIDLSMNNF 290 (628)
Q Consensus 240 ~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l 290 (628)
+|.++++- ++.++++|..||+++|-+.+.-. .-++.+..|+.|.|.+|.+
T Consensus 241 nN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66666653 35566666666666666554211 1134455566666666654
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.1e-07 Score=86.11 Aligned_cols=86 Identities=31% Similarity=0.299 Sum_probs=55.9
Q ss_pred CCCCEEEccCCccee--cCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCC
Q 037488 33 QNLEELLLWGNNFSG--TIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCK 110 (628)
Q Consensus 33 ~~L~~L~ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~ 110 (628)
+.+++|||.+|.|+. .+-..+.++|.|+.|+|+.|++...+...=..+.+|+.|.|.+..+.-... -..+..+|
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~----~s~l~~lP 146 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQS----TSSLDDLP 146 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhh----hhhhhcch
Confidence 457788888888764 333446778888888888888876443221466788888887766542211 12456677
Q ss_pred CCcEEEcccCCC
Q 037488 111 YLKYFSFSNNSL 122 (628)
Q Consensus 111 ~L~~L~l~~n~l 122 (628)
.++.|.+|.|++
T Consensus 147 ~vtelHmS~N~~ 158 (418)
T KOG2982|consen 147 KVTELHMSDNSL 158 (418)
T ss_pred hhhhhhhccchh
Confidence 777777777744
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.9e-08 Score=82.15 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=14.2
Q ss_pred CCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCC
Q 037488 232 NLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFF 266 (628)
Q Consensus 232 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l 266 (628)
.+++|+|++|+|+.+|..+..++.|+.|+++.|.+
T Consensus 78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred hhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc
Confidence 33444444444444443333344444444444433
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.6e-07 Score=77.76 Aligned_cols=90 Identities=27% Similarity=0.352 Sum_probs=52.0
Q ss_pred CCCCCCEEEccCCcCCcccccccc-CCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcE
Q 037488 157 NLTNLIAIYLGGNKLNGSIPIALG-KLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRS 235 (628)
Q Consensus 157 ~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 235 (628)
....|+..+|++|.+. .+|..|. ..+.++.|++++|+|. .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 3445555666666665 3333333 3345666666666665 45555666666666666666665 33445555666666
Q ss_pred EEccCCcCCcCCCC
Q 037488 236 LHLGSNQITSIPST 249 (628)
Q Consensus 236 L~L~~n~l~~lp~~ 249 (628)
|+..+|.+..+|-.
T Consensus 128 Lds~~na~~eid~d 141 (177)
T KOG4579|consen 128 LDSPENARAEIDVD 141 (177)
T ss_pred hcCCCCccccCcHH
Confidence 66666666665543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.2e-05 Score=71.52 Aligned_cols=84 Identities=23% Similarity=0.302 Sum_probs=59.6
Q ss_pred CCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCc
Q 037488 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLK 113 (628)
Q Consensus 34 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~ 113 (628)
+...+||++|.+... +.|..++.|.+|.|++|+|+.|.|.--.-+++|+.|.|.+|.|..+. .+..+..++.|+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~----dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG----DLDPLASCPKLE 116 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh----hcchhccCCccc
Confidence 455677788777532 34666777888888888888777776666777888888888776653 234566777888
Q ss_pred EEEcccCCCC
Q 037488 114 YFSFSNNSLD 123 (628)
Q Consensus 114 ~L~l~~n~l~ 123 (628)
+|.+-+|+++
T Consensus 117 ~Ltll~Npv~ 126 (233)
T KOG1644|consen 117 YLTLLGNPVE 126 (233)
T ss_pred eeeecCCchh
Confidence 8887777765
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=3e-05 Score=78.41 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=13.0
Q ss_pred CCcEEEccCCcCCcCCCCccCCCCCcEEEcCC
Q 037488 232 NLRSLHLGSNQITSIPSTLLNLKDILYLNLSS 263 (628)
Q Consensus 232 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~ 263 (628)
+|++|++++|....+|..+. .+|++|+++.
T Consensus 157 SLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 157 SLKTLSLTGCSNIILPEKLP--ESLQSITLHI 186 (426)
T ss_pred cccEEEecCCCcccCccccc--ccCcEEEecc
Confidence 45555555544443333222 2444444443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=6e-05 Score=76.26 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=28.8
Q ss_pred cCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCC
Q 037488 156 SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSN 217 (628)
Q Consensus 156 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 217 (628)
..+.+++.|++++|.++ .+|. -..+|+.|.++++.-...+|+.+ ..+|+.|++++|
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 34566777777777665 3341 12346666666533222344332 135555555555
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.7e-06 Score=54.65 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=16.6
Q ss_pred CCCEEeccCCcccccCccccCCCCCCCEEEccCccccC
Q 037488 58 KLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTS 95 (628)
Q Consensus 58 ~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~ 95 (628)
+|++|++++|+|+.+. ..|++|++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLP-PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccC-chHhCCCCCCEEEecCCCCCC
Confidence 3445555555554432 234555555555555555443
|
... |
| >PRK10345 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.2e-05 Score=73.41 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=51.1
Q ss_pred CCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-----cCCCcceeeeeccCCC
Q 037488 429 FSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-----RHRNLIKIISSCSNDD 496 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-----~h~niv~l~~~~~~~~ 496 (628)
......||+|+||.||. .-.++.. +||++........+.+.+|+++++.+ .||||++++|++..+.
T Consensus 4 L~~~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~ 74 (210)
T PRK10345 4 LSEQSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDC 74 (210)
T ss_pred cCCcceecCCCceEEEE-CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCC
Confidence 34567899999999996 3234444 69998765444556789999999999 5799999999997753
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.4e-06 Score=54.49 Aligned_cols=37 Identities=38% Similarity=0.679 Sum_probs=15.3
Q ss_pred CCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCc
Q 037488 208 ALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITS 245 (628)
Q Consensus 208 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (628)
+|++|++++|+|+.+ |..+++|++|+.|++++|++++
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCC
Confidence 344444444444432 2234444444444444444443
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.4e-06 Score=79.23 Aligned_cols=77 Identities=25% Similarity=0.263 Sum_probs=56.4
Q ss_pred CCCCCCEEecCccC-------------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCcc-ccCCCCCC
Q 037488 18 NVSTLNSLYLQNVQ-------------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPN-TFGNLRNL 83 (628)
Q Consensus 18 ~l~~L~~L~l~~n~-------------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~f~~l~~L 83 (628)
..+.++.++|..|+ ++.|+.|+|+.|++...+...=..+.+|++|.|.+..+.--... ....++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34667778888885 67899999999998754432224577999999998877543333 45678889
Q ss_pred CEEEccCcccc
Q 037488 84 NRLGLNDNYLT 94 (628)
Q Consensus 84 ~~L~L~~N~l~ 94 (628)
++|.++.|.+.
T Consensus 149 telHmS~N~~r 159 (418)
T KOG2982|consen 149 TELHMSDNSLR 159 (418)
T ss_pred hhhhhccchhh
Confidence 99999998554
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.8e-05 Score=68.49 Aligned_cols=61 Identities=30% Similarity=0.403 Sum_probs=34.4
Q ss_pred CCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcC
Q 037488 184 KLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSI 246 (628)
Q Consensus 184 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 246 (628)
+...+||++|.+... +.|.+++.|..|.|+.|+|+.+.|.--.-+++|+.|.|.+|.|..+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l 103 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL 103 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh
Confidence 445566666665422 3455566666666666666655554444445566666666665544
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.2e-06 Score=79.47 Aligned_cols=23 Identities=26% Similarity=0.545 Sum_probs=12.4
Q ss_pred cccCCCCCcEEEcccCCCCCCCc
Q 037488 105 SLSNCKYLKYFSFSNNSLDGILP 127 (628)
Q Consensus 105 ~~~~l~~L~~L~l~~n~l~~~~p 127 (628)
++-.|++|+..+||.|.+....|
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred HHhcCCcceeeeccccccCcccc
Confidence 34455666666666665544333
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=3e-07 Score=86.19 Aligned_cols=174 Identities=20% Similarity=0.166 Sum_probs=90.1
Q ss_pred CCCEEEccCCcCCcc-ccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCc-CcccC-CCCccCCCCCcEE
Q 037488 160 NLIAIYLGGNKLNGS-IPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNK-LSGFV-PASFGNLTNLRSL 236 (628)
Q Consensus 160 ~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L 236 (628)
.|+.+||+...|+.. +...+..+.+|+.|.|.++++...+-..+.+-.+|+.|+|+.+. ++... .-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477777777766532 22335566777777777777765555556666777777777642 22211 1135667777777
Q ss_pred EccCCcCCc--CCCCcc-CCCCCcEEEcCCCCCc---CCCCCcccCCccccEEEcCCCcCC-CCCccccCCCCCCCEEeC
Q 037488 237 HLGSNQITS--IPSTLL-NLKDILYLNLSSNFFT---GPLPLEIGNLKVLIKIDLSMNNFS-GVIPITIGYLKDLQYLFL 309 (628)
Q Consensus 237 ~L~~n~l~~--lp~~~~-~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l 309 (628)
+|+++.+.. +...+. --.+|..|+++++.-. ..+..-....++|..||||.|..- ...-..|-.++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777776643 111111 1245666776665311 011111234556666666655321 111112234555666666
Q ss_pred CCCcCcccCChh---hcCCCCCCEEECcC
Q 037488 310 EYNRLQGSIPDS---IGDLINLKSLDLSN 335 (628)
Q Consensus 310 ~~n~~~~~~~~~---~~~l~~L~~L~l~~ 335 (628)
+.|.. .+|+. +...++|.+|++-+
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEecc
Confidence 55543 34433 23445555555443
|
|
| >PRK12274 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=8.9e-05 Score=68.31 Aligned_cols=132 Identities=12% Similarity=0.007 Sum_probs=85.8
Q ss_pred CCcccccccCCccEEEEEEecCCcEEEEEEeeccch----hHHHHHHHHHHHhhccc-CCCcceeeeec---------cC
Q 037488 429 FSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYR----EAFKNFDIECDMMKHIR-HRNLIKIISSC---------SN 494 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~-h~niv~l~~~~---------~~ 494 (628)
+.....++.|+||+||.+.. .+..++.+.++.... .....|.+|+++|+++. |++|.+++++. .+
T Consensus 4 ~~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~~~~~lvmeyI~G 82 (218)
T PRK12274 4 PAVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHWDGRHLDRSYLAG 82 (218)
T ss_pred cccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEcCEEEEEeeecC
Confidence 34557899999999997765 477888777764322 12335889999999995 57788887641 11
Q ss_pred CC--------------------------------c---------------cccccccccccccCcc----cc-------c
Q 037488 495 DD--------------------------------F---------------KADFGMAKPLLKEDQS----LI-------Q 516 (628)
Q Consensus 495 ~~--------------------------------~---------------~~DFGla~~~~~~~~~----~~-------~ 516 (628)
.. . .+|||+|......... .. .
T Consensus 83 ~~L~~~~~~~~~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk 162 (218)
T PRK12274 83 AAMYQRPPRGDLAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLK 162 (218)
T ss_pred ccHHhhhhhhhHHHHHHHHHHHHHHHHCcCccCCCCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHH
Confidence 00 0 1499999854332210 00 0
Q ss_pred ccccccccccCccccccC-ccC-cccchhhHhHHHHHHhhCCCCCCc
Q 037488 517 TQTLATIGYMAPEYGREG-RVS-TNGDVYSFGIMLIETFTRKKPTDE 561 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~-~~~-~~~DVwS~Gvvl~e~ltg~~p~~~ 561 (628)
.-...++.|++|+...-- +.+ ...+.++-|+-+|.++||+.++.+
T Consensus 163 ~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~ 209 (218)
T PRK12274 163 HKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWE 209 (218)
T ss_pred HHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCccc
Confidence 011267778888754321 233 467889999999999999988654
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.66 E-value=6.8e-06 Score=76.28 Aligned_cols=195 Identities=17% Similarity=0.152 Sum_probs=106.4
Q ss_pred ccCCCCCCEEeccCCcccccCcc----ccCCCCCCCEEEccCccccCCCCC--------CcccccccCCCCCcEEEcccC
Q 037488 53 IFNASKLSRLELQMNSFYGFIPN----TFGNLRNLNRLGLNDNYLTSSTPK--------LNFLSSLSNCKYLKYFSFSNN 120 (628)
Q Consensus 53 ~~~l~~L~~L~L~~N~l~~~~~~----~f~~l~~L~~L~L~~N~l~~~~~~--------~~~~~~~~~l~~L~~L~l~~n 120 (628)
+..|+.|+..+||.|-+..-.|. .++.-+.|.+|.|++|.+--+... +.......+-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 45667777777777766543333 234556677777777755322110 000012234567777777777
Q ss_pred CCCCCCchHHhcc---ccccceeeccCCccccc-----CCccccCCCCCCEEEccCCcCCcc----ccccccCCCCCCEe
Q 037488 121 SLDGILPRAIGNL---SQSMEIFWMHSCNISGG-----IPEEISNLTNLIAIYLGGNKLNGS----IPIALGKLQKLQLL 188 (628)
Q Consensus 121 ~l~~~~p~~~~~l---~~~l~~l~l~~n~~~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L 188 (628)
++..-.......+ ...++.+.+..|.|.-. +-..+..+.+|+.|||..|-++-. +...+...+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 7654322211111 12455666666655421 011234567888888888877632 22334555667888
Q ss_pred ecccCcccccCCcc----c--cCCCCCCEEEccCCcCcccCC-C------CccCCCCCcEEEccCCcCCcCC
Q 037488 189 NLEYNQLEGSIPDD----L--CRLAALFQLDLGSNKLSGFVP-A------SFGNLTNLRSLHLGSNQITSIP 247 (628)
Q Consensus 189 ~L~~n~l~~~~p~~----~--~~l~~L~~L~L~~n~l~~~~~-~------~~~~l~~L~~L~L~~n~l~~lp 247 (628)
.+..|-++..-..+ | ...++|..|-..+|...+-.- . .-..++-|..|.+.+|++....
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 88777665322222 1 124677777777776543211 1 1135677888888899987653
|
|
| >KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.64 E-value=2e-05 Score=87.82 Aligned_cols=59 Identities=12% Similarity=-0.017 Sum_probs=47.0
Q ss_pred ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCC
Q 037488 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKK 557 (628)
Q Consensus 499 ~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~ 557 (628)
+|||.|-.+.--.........++|-.+-.+|+..|.+++.++|-|.+.-+++-|+.|+.
T Consensus 843 IDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y 901 (974)
T KOG1166|consen 843 IDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY 901 (974)
T ss_pred EecccceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence 49998865432211223355679999999999999999999999999999999999975
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=1.8e-06 Score=81.07 Aligned_cols=87 Identities=28% Similarity=0.201 Sum_probs=65.2
Q ss_pred CCCEEEccCCccee-cCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccc-cCCCCCCcccccccCCCC
Q 037488 34 NLEELLLWGNNFSG-TIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYL-TSSTPKLNFLSSLSNCKY 111 (628)
Q Consensus 34 ~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~~~~~~l~~ 111 (628)
.|+.||||+-.|+. .....+..+.+|+.|.|.++++..-+-..++.-.+|+.|+|+.+.- ++.... --+.+++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~----ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ----LLLSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH----HHHHhhhh
Confidence 48889999888863 3345567889999999999999887777888889999999988642 221110 12578899
Q ss_pred CcEEEcccCCCCC
Q 037488 112 LKYFSFSNNSLDG 124 (628)
Q Consensus 112 L~~L~l~~n~l~~ 124 (628)
|..|+++.+.+..
T Consensus 262 L~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 262 LDELNLSWCFLFT 274 (419)
T ss_pred HhhcCchHhhccc
Confidence 9999999887753
|
|
| >KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00014 Score=75.75 Aligned_cols=131 Identities=20% Similarity=0.221 Sum_probs=88.0
Q ss_pred CCCccccccc--CCccEEEEEEe---cCCcEEEEEEeec--cchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc-
Q 037488 428 GFSENNLIDR--GGIGYVYKRRI---HYGMEVAVKVFDL--QYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 428 ~~~~~~~ig~--G~~g~V~~~~~---~~~~~vavK~~~~--~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~- 498 (628)
.|.....+|. |.+|.||.+.. .++..+|+|+=+. .......+=.+|+...+++ .|+|.|+.+....+++..
T Consensus 115 ~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lf 194 (524)
T KOG0601|consen 115 RFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILF 194 (524)
T ss_pred hcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCcce
Confidence 3455678899 99999999765 4688899998332 2122223335677777777 488888865544332211
Q ss_pred ----------------------------------------------------------------------cccccccccc
Q 037488 499 ----------------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 499 ----------------------------------------------------------------------~DFGla~~~~ 508 (628)
.|||+...+.
T Consensus 195 iqtE~~~~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i~ 274 (524)
T KOG0601|consen 195 IQTELCGESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTSDWTSCKLTDFGLVSKIS 274 (524)
T ss_pred eeeccccchhHHhhhcccccCCchhhhhHHhhhhhcccccccccCCCcccccccchhheecccccceeecCCcceeEEcc
Confidence 2788877664
Q ss_pred ccCccc---ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCC
Q 037488 509 KEDQSL---IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPT 559 (628)
Q Consensus 509 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~ 559 (628)
...... ......|...|++||... +.++...||||+|.|..|..++..+.
T Consensus 275 ~~~~~~~~~~~~r~~~~~~Y~~ke~~~-~l~~~~~di~sl~ev~l~~~l~~~~~ 327 (524)
T KOG0601|consen 275 DGNFSSVFKVSKRPEGDCIYAAKELLN-GLATFASDIFSLGEVILEAILGSHLP 327 (524)
T ss_pred CCccccceeeeecCCCCceEeChhhhc-cccchHhhhcchhhhhHhhHhhcccc
Confidence 433111 111224777899999875 46889999999999999999986654
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00086 Score=57.66 Aligned_cols=104 Identities=17% Similarity=0.229 Sum_probs=35.9
Q ss_pred cccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCC-ccCCCCCcEEEcCCCCCcCCCCCcccCCccc
Q 037488 202 DLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPST-LLNLKDILYLNLSSNFFTGPLPLEIGNLKVL 280 (628)
Q Consensus 202 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 280 (628)
.|.++++|+.+.+.. .+..+...+|..+++|+.+.+..+ +..++.. +...++++.+.+.. .+.......|...++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344444555555442 344344445555555555555443 4444332 22333444444433 2222223334444455
Q ss_pred cEEEcCCCcCCCCCccccCCCCCCCEEeCC
Q 037488 281 IKIDLSMNNFSGVIPITIGYLKDLQYLFLE 310 (628)
Q Consensus 281 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 310 (628)
+.+++..+ +.......|... .|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55554433 322333334443 44444444
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00079 Score=57.88 Aligned_cols=105 Identities=22% Similarity=0.266 Sum_probs=41.2
Q ss_pred cccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCC
Q 037488 154 EISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNL 233 (628)
Q Consensus 154 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 233 (628)
.|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +.......|.++.+|+.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455555566665543 344333444555555666655543 4433344455555555555543 3333444455555555
Q ss_pred cEEEccCCcCCcCCCCccCCCCCcEEEcC
Q 037488 234 RSLHLGSNQITSIPSTLLNLKDILYLNLS 262 (628)
Q Consensus 234 ~~L~L~~n~l~~lp~~~~~l~~L~~L~l~ 262 (628)
+.+++..+ +..++...+.-.+|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNCNLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT-T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCCCceEEEEC
Confidence 55555443 44443322221244444444
|
|
| >cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00021 Score=66.06 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=41.6
Q ss_pred ccccccCCccEEEEEEecCCcEEEEEEeeccchh--H------------------------HHHHHHHHHHhhcccCCCc
Q 037488 432 NNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYRE--A------------------------FKNFDIECDMMKHIRHRNL 485 (628)
Q Consensus 432 ~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~--~------------------------~~~~~~E~~~l~~l~h~ni 485 (628)
...||+|+||.||+|...+|+.||||+++..... . .....+|++.+.++.|+++
T Consensus 2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v 81 (190)
T cd05147 2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI 81 (190)
T ss_pred CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3579999999999999878999999999753210 0 0122459999999988776
Q ss_pred c
Q 037488 486 I 486 (628)
Q Consensus 486 v 486 (628)
.
T Consensus 82 ~ 82 (190)
T cd05147 82 P 82 (190)
T ss_pred C
Confidence 3
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00018 Score=79.26 Aligned_cols=135 Identities=19% Similarity=0.209 Sum_probs=81.0
Q ss_pred CCCCCEEEccCCcceecC-C-ccccCCCCCCEEeccCCccccc-CccccCCCCCCCEEEccCccccCCCCCCcccccccC
Q 037488 32 LQNLEELLLWGNNFSGTI-P-SFIFNASKLSRLELQMNSFYGF-IPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSN 108 (628)
Q Consensus 32 l~~L~~L~ls~N~l~~~~-p-~~~~~l~~L~~L~L~~N~l~~~-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~ 108 (628)
-.+|+.||+++...-..- | ..-.-+|.|++|.+.+=.+..- ....+.+++||..||+|+..++.+ .++++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-------~GIS~ 193 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-------SGISR 193 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-------HHHhc
Confidence 357888888876542111 1 1123478888888887555321 123356788888888888888764 35778
Q ss_pred CCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccc--c----ccccCC
Q 037488 109 CKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSI--P----IALGKL 182 (628)
Q Consensus 109 l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p----~~~~~l 182 (628)
+++|++|.+.+=.+... .. -..+.+|++|+.||+|..+..... . ..-..|
T Consensus 194 LknLq~L~mrnLe~e~~-----~~-------------------l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L 249 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESY-----QD-------------------LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL 249 (699)
T ss_pred cccHHHHhccCCCCCch-----hh-------------------HHHHhcccCCCeeeccccccccchHHHHHHHHhcccC
Confidence 88888887766555420 00 012345677777777765544322 1 112347
Q ss_pred CCCCEeecccCcccc
Q 037488 183 QKLQLLNLEYNQLEG 197 (628)
Q Consensus 183 ~~L~~L~L~~n~l~~ 197 (628)
|+|+.||.|+..+.+
T Consensus 250 peLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 250 PELRFLDCSGTDINE 264 (699)
T ss_pred ccccEEecCCcchhH
Confidence 788888888776654
|
|
| >KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00034 Score=77.22 Aligned_cols=91 Identities=22% Similarity=0.212 Sum_probs=66.4
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccch
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHF 597 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (628)
..+||+.|.|||...+...+..+|.|++|++++|.++|.+||....+... ++.+...+. ..+
T Consensus 994 ~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~tpq~~-----------------f~ni~~~~~-~~p 1055 (1205)
T KOG0606|consen 994 AVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAETPQQI-----------------FENILNRDI-PWP 1055 (1205)
T ss_pred cccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCcchhhh-----------------hhccccCCC-CCC
Confidence 34699999999999999999999999999999999999999987544321 111111110 011
Q ss_pred hchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 598 VIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 598 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
.-+...+.++.+++.+.+..+|.+|-.|.
T Consensus 1056 ~g~~~~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1056 EGPEEGSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred CCccccChhhhhhhhhhhccCchhccCcc
Confidence 12223456688999999999999998765
|
|
| >cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0012 Score=61.19 Aligned_cols=56 Identities=25% Similarity=0.297 Sum_probs=43.0
Q ss_pred ccccccCCccEEEEEEecCCcEEEEEEeeccchh--------------------------HHHHHHHHHHHhhcccCCCc
Q 037488 432 NNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYRE--------------------------AFKNFDIECDMMKHIRHRNL 485 (628)
Q Consensus 432 ~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~--------------------------~~~~~~~E~~~l~~l~h~ni 485 (628)
...||+|+||.||+|+..+|+.||||+++..... ....+.+|.+.+.+++|++|
T Consensus 2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i 81 (190)
T cd05145 2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV 81 (190)
T ss_pred CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4679999999999999778999999998753210 01224578999999999987
Q ss_pred ce
Q 037488 486 IK 487 (628)
Q Consensus 486 v~ 487 (628)
..
T Consensus 82 ~~ 83 (190)
T cd05145 82 PV 83 (190)
T ss_pred CC
Confidence 43
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=1.8e-05 Score=73.78 Aligned_cols=86 Identities=24% Similarity=0.299 Sum_probs=60.1
Q ss_pred CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCC
Q 037488 32 LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKY 111 (628)
Q Consensus 32 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~ 111 (628)
+.+.+.|+++++.++.+ .....++.|+.|.|+-|+|+.+. .|..+++|++|+|..|.|.++. .+..+.++++
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sld----EL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLD----ELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHH----HHHHHhcCch
Confidence 44566777777777643 34456778888888888887764 3777788888888888776653 2345677777
Q ss_pred CcEEEcccCCCCCC
Q 037488 112 LKYFSFSNNSLDGI 125 (628)
Q Consensus 112 L~~L~l~~n~l~~~ 125 (628)
|+.|.|..|.-.+.
T Consensus 90 Lr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 90 LRTLWLDENPCCGE 103 (388)
T ss_pred hhhHhhccCCcccc
Confidence 77777777765543
|
|
| >cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.002 Score=60.20 Aligned_cols=64 Identities=22% Similarity=0.061 Sum_probs=46.9
Q ss_pred HHHHhhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccch----------------------hHHHHHHHHHHHhh
Q 037488 421 ELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYR----------------------EAFKNFDIECDMMK 478 (628)
Q Consensus 421 ~l~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~----------------------~~~~~~~~E~~~l~ 478 (628)
.+......|...+.||+|+||.||+|...+|+.||||++..... .....+.+|..++.
T Consensus 9 ~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 88 (198)
T cd05144 9 TLVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALK 88 (198)
T ss_pred HHHHcCchhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHH
Confidence 33344444788899999999999999888899999998754220 01123677888999
Q ss_pred cccCCC
Q 037488 479 HIRHRN 484 (628)
Q Consensus 479 ~l~h~n 484 (628)
++.|++
T Consensus 89 ~l~~~~ 94 (198)
T cd05144 89 ALYEEG 94 (198)
T ss_pred HHHHcC
Confidence 888874
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom |
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00056 Score=71.68 Aligned_cols=124 Identities=14% Similarity=0.161 Sum_probs=86.0
Q ss_pred CCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCC-cceeeeeccCCCcc--------
Q 037488 428 GFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRN-LIKIISSCSNDDFK-------- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~-------- 498 (628)
.+..-.-.++|+++.++|.+-...+...+|.+... ....-++++|.+++||| .|.-++-+..+++.
T Consensus 243 ws~~fh~fvK~altknpKkRptaeklL~h~fvs~~-----l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~i~s 317 (829)
T KOG0576|consen 243 WSEFFHNFVKGALTKNPKKRPTAEKLLQHPFVSQT-----LSRRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMRICS 317 (829)
T ss_pred chHHHHHHHHHHhcCCCccCCChhhheeceeeccc-----hhhHHHHHHHHHccCCCCcccccccCCcccccchhhhhhc
Confidence 33334567889999999987533444446666543 22345789999999999 66666555443322
Q ss_pred -------------------------------------------------------ccccccccccccCcccccccccccc
Q 037488 499 -------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTLATI 523 (628)
Q Consensus 499 -------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~gt~ 523 (628)
.||+.+..+.... ...+..+|+
T Consensus 318 ~~rs~~~~~~~se~~~~~~~~~~~~r~et~~l~~l~~~~~~~~d~~l~s~~~~~~~~~~v~~~L~~~~---~~~t~~~~~ 394 (829)
T KOG0576|consen 318 TGRSSALEMTVSEIALEQYQFAYPLRKETRPLAELHSSYKVHRDNILGSEEEVKLLDFAVPPQLTRTM---KPRTAIGTP 394 (829)
T ss_pred CCccccccCChhhHhhhhhhhhhhhhhhcccccccccccccCcccccccccccccccccCCcccCccc---ccccCCCCC
Confidence 1444444332221 234567999
Q ss_pred cccCccccccCccCcccchhhHhHHHHHHhhCCCCC
Q 037488 524 GYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPT 559 (628)
Q Consensus 524 ~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~ 559 (628)
.|+|||+..+..++.+.|+||.|+--.+|.-|.+|-
T Consensus 395 ~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr 430 (829)
T KOG0576|consen 395 EPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPR 430 (829)
T ss_pred CCCCchhhcccccccCCCccCCCcchhhcCCCCCCC
Confidence 999999999999999999999999888888888774
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00054 Score=75.52 Aligned_cols=108 Identities=16% Similarity=0.271 Sum_probs=46.6
Q ss_pred CCCCCEEEccCCcCCc-cccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCccc-CCCCccCCCCCcE
Q 037488 158 LTNLIAIYLGGNKLNG-SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGF-VPASFGNLTNLRS 235 (628)
Q Consensus 158 l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 235 (628)
+|+|++|.+++-.+.. .+-....++++|..||+|+..++.. ..++++++|+.|.+.+=.+... .-..+-+|++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 3445555544433321 1112233445555555555554422 3444555555555444333210 0012334555555
Q ss_pred EEccCCcCCcCCC-------CccCCCCCcEEEcCCCCCc
Q 037488 236 LHLGSNQITSIPS-------TLLNLKDILYLNLSSNFFT 267 (628)
Q Consensus 236 L~L~~n~l~~lp~-------~~~~l~~L~~L~l~~n~l~ 267 (628)
||+|..+...-+. .-..+++|+.||.|++.+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 5555444332220 1113556666666665544
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.00067 Score=63.38 Aligned_cols=60 Identities=25% Similarity=0.247 Sum_probs=28.0
Q ss_pred CCCCEEEccCCcCCccccccccCCCCCCEeecccC--cccccCCccccCCCCCCEEEccCCcCc
Q 037488 159 TNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYN--QLEGSIPDDLCRLAALFQLDLGSNKLS 220 (628)
Q Consensus 159 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~ 220 (628)
..|+.|.+.+..++.. ..|-.|++|+.|.++.| ++.+.++-....+++|++|++++|+|.
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3444444444444321 12344555666666666 443333333334455555555555554
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.00094 Score=62.44 Aligned_cols=33 Identities=36% Similarity=0.383 Sum_probs=16.8
Q ss_pred CCCCCCEEECcCCcccccC---chhhhcCCCCCEEE
Q 037488 324 DLINLKSLDLSNNNLSGII---PISLEKLLDLKDIN 356 (628)
Q Consensus 324 ~l~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~l~ 356 (628)
.+.+|..|++.+|..+... ...|.-+++|++++
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 3445556666665554421 12345566666654
|
|
| >smart00090 RIO RIO-like kinase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0034 Score=60.25 Aligned_cols=68 Identities=21% Similarity=0.133 Sum_probs=49.3
Q ss_pred chhhHHHHHhhcCCCcccccccCCccEEEEEE--ecCCcEEEEEEeeccchh------------------------HHHH
Q 037488 416 RLTYLELFQATNGFSENNLIDRGGIGYVYKRR--IHYGMEVAVKVFDLQYRE------------------------AFKN 469 (628)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~ig~G~~g~V~~~~--~~~~~~vavK~~~~~~~~------------------------~~~~ 469 (628)
......+......|+..+.||+|+||.||+|. ..+|+.||||+++..... ....
T Consensus 17 ~~~~~~~~~~~~~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (237)
T smart00090 17 RLALYSLLNRGILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLW 96 (237)
T ss_pred HHHHHHHHhcCchHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHH
Confidence 33444444555568888999999999999998 468999999998643210 1123
Q ss_pred HHHHHHHhhcccCC
Q 037488 470 FDIECDMMKHIRHR 483 (628)
Q Consensus 470 ~~~E~~~l~~l~h~ 483 (628)
+.+|++.+.++.|.
T Consensus 97 ~~~E~~~L~~L~~~ 110 (237)
T smart00090 97 AEKEFRNLQRLYEA 110 (237)
T ss_pred HHHHHHHHHHHHhc
Confidence 56899999999764
|
|
| >PRK14879 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0045 Score=58.40 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=44.0
Q ss_pred cccccCCccEEEEEEecCCcEEEEEEeeccc--------hhHHHHHHHHHHHhhcccCCCcceeeeec
Q 037488 433 NLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY--------REAFKNFDIECDMMKHIRHRNLIKIISSC 492 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~l~~~~ 492 (628)
+.||+|++|.||+|.. .|..|++|+..... ......+.+|++++..++|++|.....++
T Consensus 2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~ 68 (211)
T PRK14879 2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYF 68 (211)
T ss_pred cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEE
Confidence 5789999999999987 57789999864321 11134578899999999999886554443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.00012 Score=68.58 Aligned_cols=62 Identities=34% Similarity=0.374 Sum_probs=28.5
Q ss_pred CCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCC--CccCCCCCcEEEcCCCCCcC
Q 037488 205 RLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS--TLLNLKDILYLNLSSNFFTG 268 (628)
Q Consensus 205 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~l~~n~l~~ 268 (628)
+|+.|++|.|+-|+|+.. ..+..+++|+.|+|..|.|.++.. .+.++++|+.|.|..|...+
T Consensus 39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence 444444444444444432 224444555555555555444421 23344555555555554433
|
|
| >TIGR03724 arch_bud32 Kae1-associated kinase Bud32 | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.012 Score=54.87 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=39.2
Q ss_pred ccccCCccEEEEEEecCCcEEEEEEeeccc--------hhHHHHHHHHHHHhhcccCCCcc
Q 037488 434 LIDRGGIGYVYKRRIHYGMEVAVKVFDLQY--------REAFKNFDIECDMMKHIRHRNLI 486 (628)
Q Consensus 434 ~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv 486 (628)
.||+|+||.||+|.+ +|..|++|+..... ......+.+|++++..++|+++.
T Consensus 1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~ 60 (199)
T TIGR03724 1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVN 60 (199)
T ss_pred CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 489999999999985 47889999864321 11235678899999999988653
|
Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine. |
| >cd05119 RIO RIO kinase family, catalytic domain | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.011 Score=54.56 Aligned_cols=60 Identities=20% Similarity=0.050 Sum_probs=38.5
Q ss_pred ccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHH--HHHhhcccCCCcceeeeec
Q 037488 432 NNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIE--CDMMKHIRHRNLIKIISSC 492 (628)
Q Consensus 432 ~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E--~~~l~~l~h~niv~l~~~~ 492 (628)
.+.||+|+||.||+|...+|+.||||++....... .....+ .+.+....|++...+...+
T Consensus 2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (187)
T cd05119 2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSF-KKRKRYRTGDYRFGRKKSNWRYLSRLW 63 (187)
T ss_pred CcccccccceeEEEEECCCCCEEEEEEEecCccch-hhhhhhhHHHHHhccCCcchhhhhhHH
Confidence 36799999999999998889999999986532211 111112 2445555566555544443
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct |
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.019 Score=61.00 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=38.9
Q ss_pred ecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCC
Q 037488 448 IHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD 496 (628)
Q Consensus 448 ~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 496 (628)
..++.+|.|.+.+...........+-++-|+.+|||||+++++....+.
T Consensus 34 k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~ 82 (690)
T KOG1243|consen 34 KADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEEG 82 (690)
T ss_pred eccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcccC
Confidence 4678899999887655544556677889999999999999998776654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 628 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 5e-20 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-19 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-07 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 3e-17 | ||
| 3tl8_A | 349 | The Avrptob-Bak1 Complex Reveals Two Structurally S | 1e-08 | ||
| 3uim_A | 326 | Structural Basis For The Impact Of Phosphorylation | 4e-08 | ||
| 2qkw_B | 321 | Structural Basis For Activation Of Plant Immunity B | 9e-08 | ||
| 3hgk_A | 327 | Crystal Structure Of Effect Protein Avrptob Complex | 7e-07 | ||
| 2o6q_A | 270 | Structural Diversity Of The Hagfish Variable Lympho | 3e-06 | ||
| 2nry_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 3e-06 | ||
| 2nru_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 4e-06 | ||
| 3f69_A | 311 | Crystal Structure Of The Mycobacterium Tuberculosis | 7e-06 | ||
| 2oib_A | 301 | Crystal Structure Of Irak4 Kinase Domain Apo Form L | 7e-06 | ||
| 1mru_A | 311 | Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob | 8e-06 | ||
| 3orm_A | 311 | Mycobacterium Tuberculosis Pknb Kinase Domain D76a | 8e-06 | ||
| 1o6y_A | 299 | Catalytic Domain Of Pknb Kinase From Mycobacterium | 8e-06 | ||
| 3ori_A | 311 | Mycobacterium Tuberculosis Pknb Kinase Domain L33d | 9e-06 | ||
| 3f61_A | 311 | Crystal Structure Of M. Tuberculosis Pknb Leu33aspV | 9e-06 | ||
| 3v5q_A | 297 | Discovery Of A Selective Trk Inhibitor With Efficac | 1e-05 | ||
| 2o8y_A | 298 | Apo Irak4 Kinase Domain Length = 298 | 5e-05 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 9e-05 | ||
| 2h8h_A | 535 | Src Kinase In Complex With A Quinazoline Inhibitor | 1e-04 | ||
| 1yi6_A | 276 | C-Term Tail Segment Of Human Tyrosine Kinase (258-5 | 1e-04 | ||
| 1yoj_A | 283 | Crystal Structure Of Src Kinase Domain Length = 283 | 2e-04 | ||
| 1ksw_A | 452 | Structure Of Human C-Src Tyrosine Kinase (Thr338gly | 2e-04 | ||
| 1fmk_A | 452 | Crystal Structure Of Human Tyrosine-Protein Kinase | 2e-04 | ||
| 1y57_A | 452 | Structure Of Unphosphorylated C-Src In Complex With | 2e-04 | ||
| 3dqw_A | 286 | C-Src Kinase Domain Thr338ile Mutant In Complex Wit | 2e-04 | ||
| 1yol_A | 283 | Crystal Structure Of Src Kinase Domain In Complex W | 2e-04 | ||
| 2zm3_A | 308 | Complex Structure Of Insulin-Like Growth Factor Rec | 2e-04 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 2e-04 | ||
| 2bdf_A | 279 | Src Kinase In Complex With Inhibitor Ap23451 Length | 2e-04 | ||
| 3lvp_A | 336 | Crystal Structure Of Bisphosphorylated Igf1-R Kinas | 2e-04 | ||
| 3u4w_A | 275 | Src In Complex With Dna-Templated Macrocyclic Inhib | 2e-04 | ||
| 3dkg_A | 317 | Sgx Clone 5698a109kfg1h1 Length = 317 | 2e-04 | ||
| 3d7u_B | 277 | Structural Basis For The Recognition Of C-Src By It | 2e-04 | ||
| 3oez_A | 286 | Crystal Structure Of The L317i Mutant Of The Chicke | 2e-04 | ||
| 2oiq_A | 286 | Crystal Structure Of Chicken C-Src Kinase Domain In | 2e-04 | ||
| 3svv_A | 286 | Crystal Structure Of T338c C-Src Covalently Bound T | 2e-04 | ||
| 3geq_A | 286 | Structural Basis For The Chemical Rescue Of Src Kin | 2e-04 | ||
| 3g6h_A | 286 | Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma | 2e-04 | ||
| 2hwo_A | 286 | Crystal Structure Of Src Kinase Domain In Complex W | 2e-04 | ||
| 2qq7_A | 286 | Crystal Structure Of Drug Resistant Src Kinase Doma | 3e-04 | ||
| 3ekk_A | 307 | Insulin Receptor Kinase Complexed With An Inhibitor | 3e-04 | ||
| 1jqh_A | 308 | Igf-1 Receptor Kinase Domain Length = 308 | 3e-04 | ||
| 3i81_A | 315 | Crystal Structure Of Insulin-Like Growth Factor 1 R | 3e-04 | ||
| 1p4o_A | 322 | Structure Of Apo Unactivated Igf-1r Kinase Domain A | 3e-04 | ||
| 3qqu_A | 301 | Cocrystal Structure Of Unphosphorylated Igf With Py | 3e-04 | ||
| 1ir3_A | 306 | Phosphorylated Insulin Receptor Tyrosine Kinase In | 3e-04 | ||
| 3lw0_A | 304 | Igf-1rk In Complex With Ligand Msc1609119a-1 Length | 3e-04 | ||
| 1p14_A | 306 | Crystal Structure Of A Catalytic-Loop Mutant Of The | 3e-04 | ||
| 2z8c_A | 303 | Phosphorylated Insulin Receptor Tyrosine Kinase In | 3e-04 | ||
| 2oj9_A | 307 | Structure Of Igf-1r Kinase Domain Complexed With A | 3e-04 | ||
| 1m7n_A | 322 | Crystal Structure Of Unactivated Apo Insulin-Like G | 3e-04 | ||
| 3o23_A | 305 | Human Unphosphorylated Igf1-R Kinase Domain In Comp | 3e-04 | ||
| 3d7u_A | 263 | Structural Basis For The Recognition Of C-Src By It | 4e-04 | ||
| 1byg_A | 278 | Kinase Domain Of Human C-Terminal Src Kinase (Csk) | 4e-04 | ||
| 2eva_A | 307 | Structural Basis For The Interaction Of Tak1 Kinase | 4e-04 | ||
| 1k9a_A | 450 | Crystal Structure Analysis Of Full-Length Carboxyl- | 4e-04 | ||
| 4gs6_A | 315 | Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz | 5e-04 | ||
| 3q6w_A | 307 | Structure Of Dually-phosphorylated Met Receptor Kin | 5e-04 | ||
| 2ptk_A | 453 | Chicken Src Tyrosine Kinase Length = 453 | 5e-04 | ||
| 1rqq_A | 306 | Crystal Structure Of The Insulin Receptor Kinase In | 5e-04 | ||
| 1irk_A | 306 | Crystal Structure Of The Tyrosine Kinase Domain Of | 5e-04 | ||
| 3d7t_A | 269 | Structural Basis For The Recognition Of C-Src By It | 5e-04 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 5e-04 | ||
| 4asz_A | 299 | Crystal Structure Of Apo Trkb Kinase Domain Length | 5e-04 | ||
| 1rjb_A | 344 | Crystal Structure Of Flt3 Length = 344 | 6e-04 | ||
| 3eta_A | 317 | Kinase Domain Of Insulin Receptor Complexed With A | 6e-04 | ||
| 4gt5_A | 306 | Crystal Structure Of The Inactive Trka Kinase Domai | 6e-04 | ||
| 4f0i_A | 300 | Crystal Structure Of Apo Trka Length = 300 | 6e-04 | ||
| 4eqm_A | 294 | Structural Analysis Of Staphylococcus Aureus Serine | 7e-04 | ||
| 3i5n_A | 309 | Crystal Structure Of C-Met With Triazolopyridazine | 7e-04 | ||
| 3q6u_A | 308 | Structure Of The Apo Met Receptor Kinase In The Dua | 7e-04 | ||
| 3lq8_A | 302 | Structure Of The Kinase Domain Of C-Met Bound To Xl | 7e-04 | ||
| 4gg5_A | 319 | Crystal Structure Of Cmet In Complex With Novel Inh | 7e-04 | ||
| 4aoj_A | 329 | Human Trka In Complex With The Inhibitor Az-23 Leng | 7e-04 | ||
| 3f66_A | 298 | Human C-Met Kinase In Complex With Quinoxaline Inhi | 8e-04 | ||
| 2rfn_A | 310 | X-ray Structure Of C-met With Inhibitor. Length = 3 | 8e-04 | ||
| 2wgj_A | 306 | X-Ray Structure Of Pf-02341066 Bound To The Kinase | 8e-04 | ||
| 1r0p_A | 312 | Crystal Structure Of The Tyrosine Kinase Domain Of | 8e-04 | ||
| 3dkc_A | 317 | Sgx Clone 5698a65kfg1h1 Length = 317 | 8e-04 | ||
| 2wd1_A | 292 | Human C-Met Kinase In Complex With Azaindole Inhibi | 8e-04 | ||
| 3cth_A | 314 | Crystal Structure Of The Tyrosine Kinase Domain Of | 8e-04 | ||
| 2dq7_X | 283 | Crystal Structure Of Fyn Kinase Domain Complexed Wi | 8e-04 | ||
| 2g15_A | 318 | Structural Characterization Of Autoinhibited C-Met | 8e-04 | ||
| 3a4p_A | 319 | Human C-Met Kinase Domain Complexed With 6-Benzylox | 8e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349 | Back alignment and structure |
|
| >pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326 | Back alignment and structure |
|
| >pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321 | Back alignment and structure |
|
| >pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327 | Back alignment and structure |
|
| >pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270 | Back alignment and structure |
|
| >pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311 | Back alignment and structure |
|
| >pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301 | Back alignment and structure |
|
| >pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311 | Back alignment and structure |
|
| >pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311 | Back alignment and structure |
|
| >pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299 | Back alignment and structure |
|
| >pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311 | Back alignment and structure |
|
| >pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311 | Back alignment and structure |
|
| >pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297 | Back alignment and structure |
|
| >pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535 | Back alignment and structure |
|
| >pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276 | Back alignment and structure |
|
| >pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283 | Back alignment and structure |
|
| >pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452 | Back alignment and structure |
|
| >pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452 | Back alignment and structure |
|
| >pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452 | Back alignment and structure |
|
| >pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286 | Back alignment and structure |
|
| >pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283 | Back alignment and structure |
|
| >pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279 | Back alignment and structure |
|
| >pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336 | Back alignment and structure |
|
| >pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275 | Back alignment and structure |
|
| >pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317 | Back alignment and structure |
|
| >pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277 | Back alignment and structure |
|
| >pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286 | Back alignment and structure |
|
| >pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286 | Back alignment and structure |
|
| >pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286 | Back alignment and structure |
|
| >pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286 | Back alignment and structure |
|
| >pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286 | Back alignment and structure |
|
| >pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286 | Back alignment and structure |
|
| >pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286 | Back alignment and structure |
|
| >pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor Length = 307 | Back alignment and structure |
|
| >pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308 | Back alignment and structure |
|
| >pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315 | Back alignment and structure |
|
| >pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Resolution. Length = 322 | Back alignment and structure |
|
| >pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301 | Back alignment and structure |
|
| >pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306 | Back alignment and structure |
|
| >pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304 | Back alignment and structure |
|
| >pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306 | Back alignment and structure |
|
| >pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303 | Back alignment and structure |
|
| >pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307 | Back alignment and structure |
|
| >pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322 | Back alignment and structure |
|
| >pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305 | Back alignment and structure |
|
| >pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263 | Back alignment and structure |
|
| >pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278 | Back alignment and structure |
|
| >pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307 | Back alignment and structure |
|
| >pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450 | Back alignment and structure |
|
| >pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315 | Back alignment and structure |
|
| >pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307 | Back alignment and structure |
|
| >pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453 | Back alignment and structure |
|
| >pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306 | Back alignment and structure |
|
| >pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306 | Back alignment and structure |
|
| >pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299 | Back alignment and structure |
|
| >pdb|1RJB|A Chain A, Crystal Structure Of Flt3 Length = 344 | Back alignment and structure |
|
| >pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317 | Back alignment and structure |
|
| >pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306 | Back alignment and structure |
|
| >pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300 | Back alignment and structure |
|
| >pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294 | Back alignment and structure |
|
| >pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309 | Back alignment and structure |
|
| >pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308 | Back alignment and structure |
|
| >pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302 | Back alignment and structure |
|
| >pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319 | Back alignment and structure |
|
| >pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329 | Back alignment and structure |
|
| >pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298 | Back alignment and structure |
|
| >pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310 | Back alignment and structure |
|
| >pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306 | Back alignment and structure |
|
| >pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312 | Back alignment and structure |
|
| >pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317 | Back alignment and structure |
|
| >pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292 | Back alignment and structure |
|
| >pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314 | Back alignment and structure |
|
| >pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283 | Back alignment and structure |
|
| >pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318 | Back alignment and structure |
|
| >pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 628 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-116 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 2e-99 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 4e-98 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-94 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 2e-90 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 3e-83 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 8e-65 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 9e-34 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 2e-92 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 3e-56 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 3e-70 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 9e-67 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 4e-63 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 1e-26 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 4e-68 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 2e-64 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 7e-63 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 5e-62 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 1e-48 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 7e-48 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 5e-37 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 5e-15 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 3e-12 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 6e-62 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 2e-56 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 3e-52 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 2e-42 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 7e-34 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 2e-22 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 1e-14 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 3e-11 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 3e-60 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 5e-50 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 9e-46 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 4e-41 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 5e-59 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 1e-54 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 3e-52 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 7e-50 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 2e-47 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 1e-52 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 8e-48 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 3e-51 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 7e-48 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 2e-41 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 3e-41 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 3e-35 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 1e-30 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 2e-23 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 1e-49 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 3e-42 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 1e-41 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 6e-34 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 4e-33 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 1e-23 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 2e-08 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 7e-46 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 3e-45 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 4e-42 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 6e-37 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 1e-33 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 3e-44 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 3e-38 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 4e-31 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 1e-28 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 5e-44 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 8e-40 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 2e-36 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 1e-41 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 4e-37 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 7e-37 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 2e-32 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 2e-32 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 1e-29 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 2e-41 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 2e-29 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 9e-41 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 7e-37 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 2e-35 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 3e-32 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 4e-28 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 9e-41 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 6e-37 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 3e-35 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 8e-31 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 1e-27 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 1e-40 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 1e-37 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 4e-35 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 1e-31 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 5e-23 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 2e-12 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 3e-40 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 1e-35 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 3e-28 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 4e-15 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 1e-04 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 7e-40 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 5e-33 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 1e-32 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 1e-28 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 1e-18 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 4e-39 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 5e-38 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 3e-26 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 2e-35 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 4e-34 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 1e-33 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 2e-26 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 2e-13 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 4e-35 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 3e-32 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 5e-06 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 1e-04 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 2e-33 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 2e-32 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 6e-31 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 1e-06 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 7e-33 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 2e-31 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 3e-26 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 4e-21 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 8e-33 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 1e-27 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 4e-11 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 1e-32 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 7e-30 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 2e-29 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 3e-27 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 8e-13 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 4e-12 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 2e-05 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 2e-32 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 2e-26 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 4e-21 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 1e-13 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 3e-12 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 1e-30 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 2e-30 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 7e-29 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 9e-26 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 2e-09 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 2e-30 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 6e-30 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 2e-29 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 6e-29 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 1e-08 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 6e-29 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 1e-27 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 4e-24 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 2e-23 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 4e-12 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 8e-10 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 1e-28 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 2e-24 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 8e-23 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 2e-20 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 1e-17 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 1e-09 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 1e-04 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 4e-28 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 4e-28 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 2e-27 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 2e-27 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 4e-22 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 2e-25 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 6e-16 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 6e-08 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 4e-25 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 2e-19 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 4e-18 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 5e-17 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 4e-08 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 1e-24 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 2e-23 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 1e-22 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 4e-19 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 2e-12 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-24 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 1e-19 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-17 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 3e-16 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 9e-24 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 4e-13 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 2e-23 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 1e-22 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 1e-20 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 1e-22 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 1e-22 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 9e-21 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 4e-12 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 2e-06 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 2e-22 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 9e-21 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 2e-20 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 2e-10 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 2e-08 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 7e-22 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 7e-20 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 2e-19 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 1e-10 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 2e-09 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 4e-04 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 6e-21 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 1e-15 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 6e-21 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 3e-19 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 1e-12 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 1e-09 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 3e-20 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 3e-17 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 4e-20 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 9e-19 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 7e-10 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 7e-07 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 2e-18 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 7e-11 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 9e-18 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 2e-13 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 1e-06 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 4e-06 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 8e-04 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 2e-17 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 1e-16 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 1e-15 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 6e-05 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 2e-16 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 2e-06 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 1e-04 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 8e-04 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 2e-16 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 9e-13 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 3e-10 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 4e-16 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 1e-15 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 1e-15 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 4e-11 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 2e-08 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 4e-08 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 4e-16 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 2e-14 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 1e-13 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 5e-04 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 9e-16 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 4e-13 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 2e-06 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 2e-15 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 4e-12 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 8e-07 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 6e-15 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 4e-12 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 2e-14 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 1e-08 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 1e-05 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 6e-04 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 6e-04 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-08 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 3e-13 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 2e-12 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 8e-12 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 1e-11 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 3e-06 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 2e-05 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 5e-13 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 5e-12 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 2e-10 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 4e-07 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 6e-06 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 1e-04 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 1e-12 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 4e-08 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 3e-07 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 7e-05 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 6e-04 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 4e-12 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 1e-08 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 2e-08 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 1e-05 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 2e-05 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 6e-12 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 2e-09 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 7e-08 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 4e-04 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 3e-11 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 3e-10 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 5e-09 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 8e-11 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 1e-05 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 1e-10 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 1e-10 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 1e-10 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 7e-06 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 2e-10 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 1e-04 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 3e-10 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 9e-06 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 3e-10 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 1e-05 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 3e-10 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 6e-09 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 4e-05 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 5e-05 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 2e-04 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 4e-10 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 7e-10 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 1e-09 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 2e-04 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 5e-09 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 3e-06 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 4e-04 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 5e-09 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 5e-05 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 6e-09 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 2e-06 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 2e-04 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 4e-04 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 6e-09 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 5e-04 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 1e-08 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 1e-05 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 1e-08 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 3e-08 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 2e-08 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 6e-07 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 4e-05 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 3e-04 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 7e-04 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 2e-08 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 7e-05 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 8e-04 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 4e-08 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 4e-08 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 9e-06 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 4e-08 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 5e-05 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 6e-08 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 7e-08 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 7e-05 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 1e-07 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 1e-07 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 2e-07 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 4e-05 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 3e-07 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 3e-07 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 6e-07 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 7e-07 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 7e-07 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 1e-06 | |
| 3v5q_A | 297 | NT-3 growth factor receptor; kinase domain, kinase | 1e-06 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 1e-06 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 1e-06 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 1e-06 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 2e-06 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 2e-05 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 2e-06 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 2e-06 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 2e-06 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 3e-06 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 4e-06 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 4e-06 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 4e-06 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 4e-06 | |
| 3zzw_A | 289 | Tyrosine-protein kinase transmembrane receptor RO; | 5e-06 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 5e-06 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 5e-06 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 6e-06 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 7e-06 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 7e-06 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 7e-06 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 8e-06 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 9e-06 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 1e-05 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 1e-05 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 1e-05 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 1e-05 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 1e-05 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 8e-05 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 1e-05 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 1e-05 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 1e-05 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 1e-05 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 2e-05 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 2e-05 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 2e-05 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 2e-05 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 2e-05 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 3e-05 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 3e-05 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 3e-05 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 3e-05 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 3e-05 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 3e-05 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 3e-05 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 4e-05 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 4e-05 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 5e-05 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 6e-05 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 6e-05 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 6e-05 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 7e-05 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 7e-05 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 1e-04 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 1e-04 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 1e-04 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 2e-04 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 2e-04 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 3e-04 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 3e-04 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 3e-04 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 3e-04 | |
| 4apc_A | 350 | Serine/threonine-protein kinase NEK1; transferase; | 4e-04 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 5e-04 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 6e-04 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 7e-04 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 7e-04 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 7e-04 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 8e-04 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 9e-04 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 363 bits (935), Expect = e-116
Identities = 127/412 (30%), Positives = 183/412 (44%), Gaps = 30/412 (7%)
Query: 3 FSFNKLVGVVPTTIFNVST-LNSLYLQ-------------NVQLQNLEELLLWGNNFSGT 48
SFN+ G +P ++ N+S L +L L L+EL L N F+G
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 49 IPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSN 108
IP + N S+L L L N G IP++ G+L L L L N L P L
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-----QELMY 464
Query: 109 CKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGG 168
K L+ N L G +P + N + ++ + + ++G IP+ I L NL + L
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 169 NKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFG 228
N +G+IP LG + L L+L N G+IP + + + +N ++G
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIK 579
Query: 229 NLTNLRSLHLGSNQIT---SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDL 285
N + H N + L L N++S + G N ++ +D+
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 286 SMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPIS 345
S N SG IP IG + L L L +N + GSIPD +GDL L LDLS+N L G IP +
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 346 LEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPC 397
+ L L +I++S N L G IP G F F F N LCG P +P C
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP---LPRC 748
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 319 bits (820), Expect = 2e-99
Identities = 117/398 (29%), Positives = 179/398 (44%), Gaps = 24/398 (6%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQN---------VQLQNLEELLLWGNNFSGTIPSFIF 54
S NKL G I + L L + + + L++L+ L L N F+G IP F+
Sbjct: 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLS 290
Query: 55 -NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLK 113
L+ L+L N FYG +P FG+ L L L+ N + P +L + LK
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM----DTLLKMRGLK 346
Query: 114 YFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISN--LTNLIAIYLGGNKL 171
S N G LP ++ NLS S+ + S N SG I + L +YL N
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 172 NGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLT 231
G IP L +L L+L +N L G+IP L L+ L L L N L G +P +
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466
Query: 232 NLRSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNF 290
L +L L N +T IPS L N ++ +++LS+N TG +P IG L+ L + LS N+F
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 291 SGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLL 350
SG IP +G + L +L L N G+IP ++ S ++ N ++G + ++
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDG 582
Query: 351 DLKDINVSFN--KLEGEIPRE-GSFRNFLAESFKGNEL 385
K+ + + N + +G + +
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 315 bits (810), Expect = 4e-98
Identities = 116/381 (30%), Positives = 171/381 (44%), Gaps = 24/381 (6%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQN----------VQLQNLEELLLWGNNFSGTIPSFI 53
S NK+ G V + L L + + L+ L + GN SG I
Sbjct: 186 SGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI 243
Query: 54 FNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLK 113
++L L + N F G IP L++L L L +N T P C L
Sbjct: 244 STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD----FLSGACDTLT 297
Query: 114 YFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEE-ISNLTNLIAIYLGGNKLN 172
S N G +P G+ S +E + S N SG +P + + + L + L N+ +
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Query: 173 GSIPIALGKL-QKLQLLNLEYNQLEGSIPDDLCR--LAALFQLDLGSNKLSGFVPASFGN 229
G +P +L L L L+L N G I +LC+ L +L L +N +G +P + N
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 230 LTNLRSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMN 288
+ L SLHL N ++ +IPS+L +L + L L N G +P E+ +K L + L N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 289 NFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEK 348
+ +G IP + +L ++ L NRL G IP IG L NL L LSNN+ SG IP L
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 349 LLDLKDINVSFNKLEGEIPRE 369
L ++++ N G IP
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAA 557
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 306 bits (786), Expect = 1e-94
Identities = 116/389 (29%), Positives = 172/389 (44%), Gaps = 34/389 (8%)
Query: 4 SFNKLVGVVPT--TIFNVSTLNSLYLQN------------VQLQNLEELLLWGNNFSGTI 49
S N L G V T ++ + S L L + + ++L +LE L L N+ SG
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167
Query: 50 PSFIFNASKLSRLE---LQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSL 106
+ L+ + N G + NL L ++ N ++ P L
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP------FL 219
Query: 107 SNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYL 166
+C L++ S N L G RAI + +++ + S G IP L +L + L
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCT-ELKLLNISSNQFVGPIPP--LPLKSLQYLSL 276
Query: 167 GGNKLNGSIPIAL-GKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPA 225
NK G IP L G L L+L N G++P + L L L SN SG +P
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 226 -SFGNLTNLRSLHLGSNQIT-SIPSTLLNLKDIL-YLNLSSNFFTGPLPLEIGN--LKVL 280
+ + L+ L L N+ + +P +L NL L L+LSSN F+GP+ + L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 281 IKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSG 340
++ L N F+G IP T+ +L L L +N L G+IP S+G L L+ L L N L G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 341 IIPISLEKLLDLKDINVSFNKLEGEIPRE 369
IP L + L+ + + FN L GEIP
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSG 485
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 295 bits (757), Expect = 2e-90
Identities = 94/372 (25%), Positives = 159/372 (42%), Gaps = 26/372 (6%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIP-SFIFNASKLSR 61
S N G VP + LE L L NNFSG +P + L
Sbjct: 301 LSGNHFYGAVPPFFGS-------------CSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 62 LELQMNSFYGFIPNTFGNLR-NLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNN 120
L+L N F G +P + NL +L L L+ N + + + L+ NN
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT---LQELYLQNN 404
Query: 121 SLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALG 180
G +P + N S + + +SG IP + +L+ L + L N L G IP L
Sbjct: 405 GFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 181 KLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGS 240
++ L+ L L++N L G IP L L + L +N+L+G +P G L NL L L +
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 241 NQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIG 299
N + +IP+ L + + +++L+L++N F G +P + ++ N +G + I
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIK 579
Query: 300 YLKDLQYLFLEYNRLQ--GSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINV 357
+ N L+ G + + L ++++ G + + + +++
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 358 SFNKLEGEIPRE 369
S+N L G IP+E
Sbjct: 640 SYNMLSGYIPKE 651
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 276 bits (709), Expect = 3e-83
Identities = 101/334 (30%), Positives = 155/334 (46%), Gaps = 16/334 (4%)
Query: 43 NNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNF 102
N + S + + + L L L + G + F +L L L+ N L+
Sbjct: 63 NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVT---T 118
Query: 103 LSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEI---SNLT 159
L+SL +C LK+ + S+N+LD + G S+E+ + + +ISG
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178
Query: 160 NLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKL 219
L + + GNK++G + + + L+ L++ N IP L +AL LD+ NKL
Sbjct: 179 ELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 235
Query: 220 SGFVPASFGNLTNLRSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEI-GNL 277
SG + T L+ L++ SNQ IP LK + YL+L+ N FTG +P + G
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGAC 293
Query: 278 KVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIP-DSIGDLINLKSLDLSNN 336
L +DLS N+F G +P G L+ L L N G +P D++ + LK LDLS N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 337 NLSGIIPISLEKLL-DLKDINVSFNKLEGEIPRE 369
SG +P SL L L +++S N G I
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 226 bits (578), Expect = 8e-65
Identities = 76/299 (25%), Positives = 127/299 (42%), Gaps = 17/299 (5%)
Query: 79 NLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSME 138
+ + L+ L ++ SSL + L+ SN+ ++G + + S+
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVS--SSLLSLTGLESLFLSNSHINGSVS-GFKCSA-SLT 103
Query: 139 IFWMHSCNISGGIPE--EISNLTNLIAIYLGGNKLNGSIPI-ALGKLQKLQLLNLEYNQL 195
+ ++SG + + + + L + + N L+ + KL L++L+L N +
Sbjct: 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163
Query: 196 EGSIPDDLCR---LAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT-SIPSTLL 251
G+ L L + NK+SG V NL L + SN + IP L
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LG 220
Query: 252 NLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEY 311
+ + +L++S N +G I L +++S N F G IP LK LQYL L
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAE 278
Query: 312 NRLQGSIPDSI-GDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPRE 369
N+ G IPD + G L LDLS N+ G +P L+ + +S N GE+P +
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 9e-34
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 11/180 (6%)
Query: 204 CRLAALFQLDLGSNKLSGF---VPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLN 260
CR + +DL S L+ V +S +LT L SL L ++ I S + L+
Sbjct: 47 CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLD 106
Query: 261 LSSNFFTGPLP--LEIGNLKVLIKIDLSMNNFSGVIPITIGY-LKDLQYLFLEYNRLQGS 317
LS N +GP+ +G+ L +++S N ++ G L L+ L L N + G+
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166
Query: 318 IPDSI---GDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374
LK L +S N +SG + +S + ++L+ ++VS N IP G
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPFLGDCSA 224
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 286 bits (735), Expect = 2e-92
Identities = 93/331 (28%), Positives = 142/331 (42%), Gaps = 54/331 (16%)
Query: 67 NSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGIL 126
++ G + +T +N L L+ L P SSL+N YL +
Sbjct: 36 RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP---IPSSLANLPYLNFLYIGGI------ 86
Query: 127 PRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQ 186
N+ G IP I+ LT L +Y+ ++G+IP L +++ L
Sbjct: 87 ------------------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128
Query: 187 LLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSI 246
L+ YN L G++P + L L + N++SG +P S+G+ + L
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL------------- 175
Query: 247 PSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQY 306
+ +S N TG +P NL L +DLS N G + G K+ Q
Sbjct: 176 ---------FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 307 LFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEI 366
+ L N L + +G NL LDL NN + G +P L +L L +NVSFN L GEI
Sbjct: 226 IHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 367 PREGSFRNFLAESFKGNELLCGMPNLQVPPC 397
P+ G+ + F ++ N+ LCG P +P C
Sbjct: 285 PQGGNLQRFDVSAYANNKCLCGSP---LPAC 312
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 191 bits (489), Expect = 3e-56
Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 24/254 (9%)
Query: 3 FSFNKLVGV--VPTTIFNVSTLNSLYLQNV------------QLQNLEELLLWGNNFSGT 48
S L +P+++ N+ LN LY+ + +L L L + N SG
Sbjct: 57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116
Query: 49 IPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSN 108
IP F+ L L+ N+ G +P + +L NL + + N ++ + P S +
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-----DSYGS 171
Query: 109 CKYL-KYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLG 167
L + S N L G +P NL ++ + + G + N I+L
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 168 GNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASF 227
N L + +G + L L+L N++ G++P L +L L L++ N L G +P
Sbjct: 230 KNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287
Query: 228 GNLTNLRSLHLGSN 241
GNL +N
Sbjct: 288 GNLQRFDVSAYANN 301
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 239 bits (612), Expect = 3e-70
Identities = 76/397 (19%), Positives = 138/397 (34%), Gaps = 30/397 (7%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRL 62
+N + + ++ + + L L+ + + + + L L
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKR----SFTKQSISLASLPKIDDFSFQWLKCLEHL 334
Query: 63 ELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSL 122
++ N G N F L NL L L++++ + T SL++ L + + N +
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKI 393
Query: 123 DGILPRAIGNLSQSMEIFWMHSCNISGGIP-EEISNLTNLIAIYLGGNKLNGSIPIALGK 181
I A L +E+ + I + +E L N+ IYL NK +
Sbjct: 394 SKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452
Query: 182 LQKLQLLNLEYNQLEG--SIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLG 239
+ LQ L L L+ S P L L LDL +N ++ L L L L
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512
Query: 240 SNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIG 299
N + + + G + L L ++L N F +
Sbjct: 513 HNNLARLWK---------------HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557
Query: 300 YLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLD-LKDINVS 358
L +L+ + L N L + ++LKSL+L N ++ + L ++++
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617
Query: 359 FNKLEGEIPREGSFRNFLAESFK-----GNELLCGMP 390
FN + F N++ E+ + LC P
Sbjct: 618 FNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 9e-67
Identities = 84/402 (20%), Positives = 144/402 (35%), Gaps = 37/402 (9%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQN-----------VQLQNLEELLLWGNNFSGTIPSF 52
+ N+L + S L SL + +L L+ L L N S
Sbjct: 33 THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT 92
Query: 53 IFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYL 112
+ L+ L L NS N F +NL L L+ N L+S+ + + L
Sbjct: 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-----GTQVQLENL 147
Query: 113 KYFSFSNNSLDGILPRAIGNLSQSM-EIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKL 171
+ SNN + + + + S + + S I P + L ++L +L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207
Query: 172 NGSIPIALG---KLQKLQLLNLEYNQLEGSIPDDL--CRLAALFQLDLGSNKLSGFVPAS 226
S+ L ++ L+L +QL + + L LDL N L+ S
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267
Query: 227 FGNLTNLRSLHLGSNQITSI-PSTLLNLKDILYLNLSSNFFTGPL---------PLEIGN 276
F L L L N I + +L L ++ YLNL +F +
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327
Query: 277 LKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIG----DLINLKSLD 332
LK L +++ N+ G+ L +L+YL L + + L L+
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387
Query: 333 LSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374
L+ N +S I + L L+ +++ N++ E+ +R
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG-QEWRG 428
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 4e-63
Identities = 80/359 (22%), Positives = 140/359 (38%), Gaps = 28/359 (7%)
Query: 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYL 93
+ E + +P + + ++ L L N F L L + N +
Sbjct: 5 SHEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 94 TSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPE 153
+ P LK + +N L + + + ++ + S +I
Sbjct: 62 SKLEP-----ELCQKLPMLKVLNLQHNELSQLSDKTFAFCT-NLTELHLMSNSIQKIKNN 115
Query: 154 EISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDL--CRLAALFQ 211
NLI + L N L+ + +L+ LQ L L N+++ ++L ++L +
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175
Query: 212 LDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT-SIPSTL---LNLKDILYLNLSSNFFT 267
L+L SN++ F P F + L L L + Q+ S+ L L I L+LS++ +
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235
Query: 268 GPLPLEIGNLKV--LIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDL 325
LK L +DLS NN + V + +L L+Y FLEYN +Q S+ L
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295
Query: 326 INLKSLDLSNN---------NLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNF 375
N++ L+L + +L I S + L L+ +N+ N + G F
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS--NMFTGL 352
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-26
Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 4/144 (2%)
Query: 231 TNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNF 290
+ ++T +P L +I LNL+ N L +D+ N
Sbjct: 4 VSHEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 291 SGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLL 350
S + P L L+ L L++N L + NL L L +N++ I K
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 351 DLKDINVSFNKLEGEIPREGSFRN 374
+L +++S N L G+
Sbjct: 122 NLITLDLSHNGLSSTKL--GTQVQ 143
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 232 bits (594), Expect = 4e-68
Identities = 65/425 (15%), Positives = 121/425 (28%), Gaps = 55/425 (12%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQN---------------VQLQNLEELLLWGNNFSGT 48
G VP I ++ L L L + + E+ ++ T
Sbjct: 89 EGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKT 148
Query: 49 IPSFIFNA--SKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSL 106
+ S L + + + I + ++G N +T ++
Sbjct: 149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF------VSKAV 202
Query: 107 SNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYL 166
L+ F N+ + NL +L + +
Sbjct: 203 MRLTKLRQFYMGNSPFVAENICEAWENEN------SEYAQQYKTEDLKWDNLKDLTDVEV 256
Query: 167 GGNKLNGSIPIALGKLQKLQLLNLEYNQL--------EGSIPDDLCRLAALFQLDLGSNK 218
+P L L ++QL+N+ N+ + D + + +G N
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316
Query: 219 L-SGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNL 277
L + V S + L L NQ+ + + LNL+ N T G
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFT 376
Query: 278 KVLIKIDLSMNNFSGV-IPITIGYLKDLQYLFLEYNRLQG-------SIPDSIGDLINLK 329
+ + + + N + + + + YN + + + IN+
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436
Query: 330 SLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGM 389
S++LSNN +S L IN+ N L IP+ NE
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKN--------SLKDENENFKNT 487
Query: 390 PNLQV 394
L
Sbjct: 488 YLLTS 492
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 222 bits (569), Expect = 2e-64
Identities = 58/370 (15%), Positives = 123/370 (33%), Gaps = 28/370 (7%)
Query: 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYG----FIPNTFGNLRNLNRL 86
+ L L G SG +P I ++L L L + F P + +
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 87 GLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCN 146
+ + + S+ L +++ + ++ + +I N
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSD---LIKDCINSDPQQKSIKKSSRITLKDTQIG--QLSN 193
Query: 147 ISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRL 206
+ + + LT L Y+G + + + N EY Q + L
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENI-----CEAWENENSEYAQQYKTEDLKWDNL 248
Query: 207 AALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP---------STLLNLKDIL 257
L +++ + +P L ++ +++ N+ S + + I
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308
Query: 258 YLNLSSN-FFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQG 316
+ + N T P+ + +K L ++ N G +P G L L L YN++
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE 367
Query: 317 SIPDSIGDLINLKSLDLSNNNLSGI-IPISLEKLLDLKDINVSFNKLEGEIPREGSFRNF 375
+ G +++L ++N L I + + + I+ S+N++ +F
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG--KNFDPL 425
Query: 376 LAESFKGNEL 385
FKG +
Sbjct: 426 DPTPFKGINV 435
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 7e-63
Identities = 60/394 (15%), Positives = 121/394 (30%), Gaps = 51/394 (12%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQL------QNLEELLLWGNNFSGTIPSFIFNAS 57
N + V + ++ L Y+ N + E T N
Sbjct: 191 LSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK 249
Query: 58 KLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTP---KLNFLSSLSNCKYLKY 114
L+ +E+ +P L + + + N S L+ + ++
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309
Query: 115 FSFSNNSLDGI-LPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNG 173
N+L + ++ + + + + G + L ++ L N++
Sbjct: 310 IYIGYNNLKTFPVETSLQKMK-KLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITE 367
Query: 174 SIPIALGKLQKLQLLNLEYNQLEGSIPD--DLCRLAALFQLDLGSNKLSGFV-------P 224
G ++++ L+ +N+L+ IP+ D ++ + +D N++
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426
Query: 225 ASFGNLTNLRSLHLGSNQITSIPSTLL-NLKDILYLNLSSNFFTG-------PLPLEIGN 276
+ N+ S++L +NQI+ P L + +NL N T N
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486
Query: 277 LKVLIKIDLSMNNFSGVIP-ITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSN 335
+L IDL N + + L L + L YN P + LK + N
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545
Query: 336 NNLSGIIPISLEKLLDLKDINVSFNKLEGEIPRE 369
+ N+ E P
Sbjct: 546 Q------------------RDAQGNRTLREWPEG 561
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 216 bits (551), Expect = 5e-62
Identities = 59/378 (15%), Positives = 113/378 (29%), Gaps = 52/378 (13%)
Query: 6 NKLVGVVPTTIFNVSTLNSLYLQN-------------------VQLQNLEELLLWGNNF- 45
+ +PT + + + + + + ++ + + NN
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318
Query: 46 SGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSS 105
+ + + + KL LE N G +P FG+ L L L N +T +
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPA-----NF 372
Query: 106 LSNCKYLKYFSFSNNSLDGILPRA-IGNLSQSMEIFWMHSCNISG-------GIPEEISN 157
+ ++ SF++N L I ++S M I +
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVS-VMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431
Query: 158 LTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEG-------SIPDDLCRLAALF 210
N+ +I L N+++ L +NL N L ++ L
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491
Query: 211 QLDLGSNKLSGFVPA-SFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYL------NLSS 263
+DL NKL+ L L + L N + P+ LN + +
Sbjct: 492 SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQG 551
Query: 264 NFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIG 323
N P I L ++ + N+ + I ++ L ++ N +
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVC 608
Query: 324 DLINLKSLDLSNNNLSGI 341
I L + I
Sbjct: 609 PYIEAGMYMLFYDKTQDI 626
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 1e-48
Identities = 49/315 (15%), Positives = 86/315 (27%), Gaps = 32/315 (10%)
Query: 3 FSFNKL-VGVVPTTIFNVSTLNSLYLQN----------VQLQNLEELLLWGNNFSGTIPS 51
+N L V T++ + L L L L L N + +
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN 371
Query: 52 FIFNASKLSRLELQMNSFYGFIPNTF-GNLRNLNRLGLNDNYLTSSTPKL--NFLSSLSN 108
F ++ L N ++ ++ + + N + S K +
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431
Query: 109 CKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISG-------GIPEEISNLTNL 161
+ + SNN + S + + ++ E N L
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGS-PLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490
Query: 162 IAIYLGGNKLNGSIP-IALGKLQKLQLLNLEYNQLEGSIPDDLCRLAAL------FQLDL 214
+I L NKL L L ++L YN P + L Q D
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA 549
Query: 215 GSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEI 274
N+ P +L L +GSN I + + +I L++ N +
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYV 607
Query: 275 GNLKVLIKIDLSMNN 289
L +
Sbjct: 608 CPYIEAGMYMLFYDK 622
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 7e-48
Identities = 45/320 (14%), Positives = 105/320 (32%), Gaps = 28/320 (8%)
Query: 65 QMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDG 124
+++ + + + + L L + P ++ L+ + ++
Sbjct: 65 ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVP-----DAIGQLTELEVLALGSHGEKV 119
Query: 125 ----ILPRAIGNLSQSMEIFWMHSCNISGGIPEEIS--NLTNLIAIYLGGNKLNGSIPIA 178
P+ I E + + + ++LI + + SI +
Sbjct: 120 NERLFGPKGISANMSD-EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178
Query: 179 LGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHL 238
K + N + + + RL L Q +G++ N
Sbjct: 179 SRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA-- 235
Query: 239 GSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPIT- 297
Q + NLKD+ + + + LP + L + I+++ N +
Sbjct: 236 --QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD 293
Query: 298 -------IGYLKDLQYLFLEYNRLQ-GSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKL 349
+ +Q +++ YN L+ + S+ + L L+ N L G +P +
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352
Query: 350 LDLKDINVSFNKLEGEIPRE 369
+ L +N+++N++ IP
Sbjct: 353 IKLASLNLAYNQITE-IPAN 371
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 5e-37
Identities = 36/280 (12%), Positives = 75/280 (26%), Gaps = 34/280 (12%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQN------------VQLQNLEELLLWGNNFSG---- 47
++N++ + + +L + + + + N
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420
Query: 48 ---TIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTS--STPKLNF 102
+ F +S + L N F F L+ + L N LT +
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480
Query: 103 LSSLSNCKYLKYFSFSNNSLDGILP-RAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNL 161
+ N L N L + L + + + S P + N + L
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTL-PYLVGIDLSYNSFSK-FPTQPLNSSTL 538
Query: 162 IAIYLG------GNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLG 215
+ GN+ P + L L + N + + + + + LD+
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIK 595
Query: 216 SNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLK 254
N + L ++ I L++K
Sbjct: 596 DNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 5e-15
Identities = 29/176 (16%), Positives = 53/176 (30%), Gaps = 11/176 (6%)
Query: 201 DDLCRLAALFQ-LDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYL 259
D L ++ L+ + GF N + L + Q +L + + L
Sbjct: 30 KDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQP---GVSLNSNGRVTGL 86
Query: 260 NLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSG----VIPITIGYLKDLQYLFLEYNRLQ 315
+L +G +P IG L L + L + P I + Q
Sbjct: 87 SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ 146
Query: 316 GSIPDSIG--DLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPRE 369
+ D D +L ++++ I S L I N + + +
Sbjct: 147 KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA 201
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 3e-12
Identities = 14/117 (11%), Positives = 35/117 (29%), Gaps = 7/117 (5%)
Query: 284 DLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSG--- 340
+ ++ + +++ + L LE G +PD+IG L L+ L L ++
Sbjct: 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122
Query: 341 -IIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFL---AESFKGNELLCGMPNLQ 393
P + + + + +F + + +
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 220 bits (561), Expect = 6e-62
Identities = 63/421 (14%), Positives = 132/421 (31%), Gaps = 52/421 (12%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNV------QLQNLEELLLWGNNFSGTIPSFIFNAS 57
+ + + + + L++L ++ L+ +P F+++
Sbjct: 456 ANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515
Query: 58 KLSRLELQMNSFYGF---------IPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSN 108
+L L + N + + + + N L +SL
Sbjct: 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS----ASLQK 571
Query: 109 CKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEI-SNLTNLIAIYLG 167
L +N + + A G + + I IPE+ + + +
Sbjct: 572 MVKLGLLDCVHNKVRHL--EAFGTNV-KLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFS 627
Query: 168 GNKLNGSIP--IALGKLQKLQLLNLEYNQLEGSIPD-----DLCRLAALFQLDLGSNKLS 220
NKL IP + + ++ YN++ + D + + L N++
Sbjct: 628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686
Query: 221 GFVPASFGNLTNLRSLHLGSNQITSIPSTLL--------NLKDILYLNLSSNFFTG-PLP 271
F F + + ++ L +N +TSIP L N + ++L N T
Sbjct: 687 KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746
Query: 272 LEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYL------FLEYNRLQGSIPDSIGDL 325
L L +D+S N FS P L+ E NR+ P I
Sbjct: 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805
Query: 326 INLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKL-EGEIPREGSFRNFLAESFKGNE 384
+L L + +N++ + +L L +++ N ++ + ++
Sbjct: 806 PSLIQLQIGSNDIRKVDEKLTPQLYIL---DIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
Query: 385 L 385
Sbjct: 863 T 863
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 2e-56
Identities = 69/399 (17%), Positives = 120/399 (30%), Gaps = 63/399 (15%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQL------QNLEELLLWGNNFSGTIPSFIFNAS 57
N++ + I ++ L +Y N + E+ N
Sbjct: 433 LTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491
Query: 58 KLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSL----SNCKYLK 113
L+ +EL +P+ +L L L + N S+ + L ++
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551
Query: 114 YFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNG 173
F N+L+ + + L + NK+
Sbjct: 552 IFYMGYNNLEEF------------------------PASASLQKMVKLGLLDCVHNKVR- 586
Query: 174 SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLA-ALFQLDLGSNKLSGFVPA-SFGNLT 231
+ A G KL L L+YNQ+E IP+D C + L NKL + ++
Sbjct: 587 HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644
Query: 232 NLRSLHLGSNQITSIPSTL------LNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDL 285
+ S+ N+I S + + + LS N + I L
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704
Query: 286 SMNNFS-------GVIPITIGYLKDLQYLFLEYNRLQGSIPDSI--GDLINLKSLDLSNN 336
S N + L + L +N+L S+ D L L ++D+S N
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN 763
Query: 337 NLSGIIPISLEKLLDLKDINVSF------NKLEGEIPRE 369
S P LK + N++ + P
Sbjct: 764 CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 3e-52
Identities = 57/359 (15%), Positives = 109/359 (30%), Gaps = 22/359 (6%)
Query: 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND 90
+ L L G G +P I ++L L +S +
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380
Query: 91 NYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGG 150
+ + K+ FL + N + P + + + N
Sbjct: 381 HRIRMHYKKM-FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF 439
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210
I + I LT L IY + + N +Y + + L L
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELSWSNLKDLT 494
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITS----------IPSTLLNLKDILYLN 260
++L + +P +L L+SL++ N+ S + I
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554
Query: 261 LSSNFFTG-PLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIP 319
+ N P + + L +D N + G L L L+YN+++ IP
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIP 611
Query: 320 DSIG-DLINLKSLDLSNNNLSGI-IPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFL 376
+ ++ L S+N L I + + + + ++ S+NK+ E +
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 163 bits (413), Expect = 2e-42
Identities = 49/317 (15%), Positives = 92/317 (29%), Gaps = 39/317 (12%)
Query: 3 FSFNKLVGV-VPTTIFNVSTLNSLYLQN---------VQLQNLEELLLWGNNFSGTIPSF 52
+N L ++ + L L + L +L L N IP
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPED 613
Query: 53 IF-NASKLSRLELQMNSFYGFIPNTF--GNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNC 109
++ L N IPN F ++ + + + N + S ++
Sbjct: 614 FCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672
Query: 110 KYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNIS-------GGIPEEISNLTNLI 162
+ S N + S + + + ++ N L
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGS-PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731
Query: 163 AIYLGGNKLNGSIP--IALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDL------ 214
I L NKL S+ L L +++ YN S P + L +
Sbjct: 732 TIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDA 789
Query: 215 GSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLL-NLKDILYLNLSSN-FFTGPLPL 272
N++ P +L L +GSN I + L L L+++ N + +
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLY---ILDIADNPNISIDVTS 846
Query: 273 EIGNLKVLIKIDLSMNN 289
++ + L +
Sbjct: 847 VCPYIEAGM-YVLLYDK 862
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 7e-34
Identities = 43/261 (16%), Positives = 89/261 (34%), Gaps = 22/261 (8%)
Query: 142 MHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPD 201
++ N + + L G G +P A+G+L +L++L+ + S
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365
Query: 202 DLCRLAALFQLDLGSNKLSGFVPASFG-NLTNLRSLHLGSNQITSIPS-------TLLNL 253
+ +++ F L L + I P + ++L
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425
Query: 254 KDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNR 313
KD + +N T + I L L I + + F+ D + +Y +
Sbjct: 426 KD-TQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAK 478
Query: 314 LQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFR 373
+ S +L +L ++L N +P L L +L+ +N++ N+ + +
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADW 537
Query: 374 NFLAESFKGNELLCGMPNLQV 394
LA+ P +Q+
Sbjct: 538 TRLADDE------DTGPKIQI 552
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-22
Identities = 36/216 (16%), Positives = 59/216 (27%), Gaps = 20/216 (9%)
Query: 27 LQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSF-------YGFIPNTFGN 79
+ + + N + L N S +S + L N + N
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726
Query: 80 LRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEI 139
L + L N LTS + + YL S N P N SQ
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRA----TTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAF 781
Query: 140 -----FWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQ 194
I P I+ +LI + +G N + + L +L +L++ N
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNP 838
Query: 195 LEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNL 230
+C L +K +
Sbjct: 839 NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGI 874
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 1e-14
Identities = 30/253 (11%), Positives = 66/253 (26%), Gaps = 32/253 (12%)
Query: 174 SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNL 233
S + KL K + ++ + I D A LD + + + + N
Sbjct: 243 SFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW 302
Query: 234 RSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGV 293
L N + L+L+ G +P IG L L + ++ +
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362
Query: 294 IPITIGYLKDLQYLFLEYNRLQGSIPDSIGD-LINLKSLDLSNNNLSGI----------- 341
+ +R++ D L DL + ++
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422
Query: 342 -----------------IPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNE 384
I ++++L L+ I + + + + +
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482
Query: 385 L---LCGMPNLQV 394
+ +L
Sbjct: 483 EELSWSNLKDLTD 495
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 3e-11
Identities = 19/153 (12%), Positives = 47/153 (30%), Gaps = 18/153 (11%)
Query: 282 KIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGI 341
+ ++ + + + + L L +G +PD+IG L LK L ++ +
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362
Query: 342 IPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPCRTRI 401
+ ++ L +++ L L + +
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYK---------------KMFLDYDQRLNLSDL---L 404
Query: 402 HHTSRKNGLLIGIRRLTYLELFQATNGFSENNL 434
+N + I++ + + L G N +
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 3e-60
Identities = 77/439 (17%), Positives = 134/439 (30%), Gaps = 59/439 (13%)
Query: 3 FSFNKLVGVVPTTIFNVSTL----NSLYLQNVQLQ----------NLEELLLWGNNFSGT 48
S NK+ + T + + + SL L + L +L L N S
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN 215
Query: 49 IPSFIFNA-SKLSRLELQMNSF------YGFIPNTFGNLRNLNRLGLNDNYLTSSTP--- 98
+ + L L + F F + L NL YL
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275
Query: 99 -----------------KLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFW 141
+ + S ++ N + +L +
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR------ 329
Query: 142 MHSCNISGGIPEEISNLTNLIAIYLGGNKLN--GSIPIALGKLQKLQLLNLEYNQLEGSI 199
+ + GG +L +L + L N L+ G + L+ L+L +N + +
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-M 388
Query: 200 PDDLCRLAALFQLDLGSNKLSGFVPAS-FGNLTNLRSLHLGSNQITSI-PSTLLNLKDIL 257
+ L L LD + L S F +L NL L + L +
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448
Query: 258 YLNLSSNFFTGPLPLEI-GNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQG 316
L ++ N F +I L+ L +DLS + P L LQ L + +N
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508
Query: 317 SIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLD-LKDINVSFNKLEGEIPREGSFRNF 375
L +L+ LD S N++ L+ L +N++ N + SF +
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ-SFLQW 567
Query: 376 LAES----FKGNELLCGMP 390
+ + + + C P
Sbjct: 568 IKDQRQLLVEVERMECATP 586
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 5e-50
Identities = 82/417 (19%), Positives = 141/417 (33%), Gaps = 53/417 (12%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQN-----------VQLQNLEELLLWGNNFSGTIPSF 52
S ++ + ++S L++L L L +L++L+ N +
Sbjct: 60 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119
Query: 53 IFNASKLSRLELQMNSFYGF-IPNTFGNLRNLNRLGLNDNYLTSSTPK-LNFLSSLSNCK 110
I + L L + N F +P F NL NL L L+ N + S L L +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL- 178
Query: 111 YLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEE-ISNLTNLIAIYLGGN 169
S N ++ I P A + + + + S + + I L L L
Sbjct: 179 -NLSLDLSLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235
Query: 170 KLNGSIPI------ALGKLQKLQLLNLEYNQLEGS---IPDDLCRLAALFQLDLGSNKLS 220
+ + AL L L + L+ I D L + L S +
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295
Query: 221 GFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVL 280
F + L L + + P+ L LK + L +SN +L L
Sbjct: 296 RVKD--FSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSL 349
Query: 281 IKIDLSMN--NFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNL 338
+DLS N +F G + L+YL L +N + + + L L+ LD ++NL
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 408
Query: 339 SGIIPIS-LEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQV 394
+ S L +L +++S + G+ +L+V
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFN----------------GIFNGLSSLEV 449
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 9e-46
Identities = 66/369 (17%), Positives = 114/369 (30%), Gaps = 49/369 (13%)
Query: 42 GNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLN 101
NF IP + L+L N +F + L L L+ + +
Sbjct: 16 ELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--- 69
Query: 102 FLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNL 161
+ + +L + N + + S L++L
Sbjct: 70 --GAYQSLSHLSTLILTGNPIQSL-------------------------ALGAFSGLSSL 102
Query: 162 IAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEG-SIPDDLCRLAALFQLDLGSNKLS 220
+ L +G L+ L+ LN+ +N ++ +P+ L L LDL SNK+
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 221 GFVPASFGNLTNLR----SLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLP-LEIG 275
L + SL L N + I + L L +NF + + I
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222
Query: 276 NLKVLIKIDLSMNNFSGVIPIT---IGYLKDLQYLFLEYNRLQ------GSIPDSIGDLI 326
L L L + F + L+ L L +E RL I D L
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282
Query: 327 NLKSLDLSNNNLSGIIPIS-LEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNEL 385
N+ S L + + + S L+ +N F + + F +
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342
Query: 386 LCGMPNLQV 394
+P+L+
Sbjct: 343 EVDLPSLEF 351
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 4e-41
Identities = 48/255 (18%), Positives = 89/255 (34%), Gaps = 15/255 (5%)
Query: 118 SNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPI 177
+ I NL S + + + + L + L ++
Sbjct: 15 MELNFYKI----PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 178 ALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLH 237
A L L L L N ++ L++L +L L+ G+L L+ L+
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130
Query: 238 LGSNQITS--IPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLK----VLIKIDLSMNNFS 291
+ N I S +P NL ++ +L+LSSN ++ L + + +DLS+N +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 292 GVIPITIGYLKDLQYLFLEYNRLQGSIP-DSIGDLINLKSLDLSNNNLSG---IIPISLE 347
+ P ++ L L L N ++ I L L+ L +
Sbjct: 191 FIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249
Query: 348 KLLDLKDINVSFNKL 362
L L ++ + +L
Sbjct: 250 ALEGLCNLTIEEFRL 264
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 5e-59
Identities = 83/420 (19%), Positives = 154/420 (36%), Gaps = 34/420 (8%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQN-----------VQLQNLEELLLWGNNFSGTIPS 51
FSFN L + TT + L L L L+ L+L N +
Sbjct: 40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET 99
Query: 52 FIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKY 111
+ L L N + L L L N+++S +
Sbjct: 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL-----PKGFPTEK 154
Query: 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKL 171
LK F NN++ + + +L Q+ + + N GI + ++ GG +
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214
Query: 172 NGSIPIALG--KLQKLQLLNLEYNQLEGSIPDDLCRLAA--LFQLDLGSNKLSGFVPASF 227
I L +Q L L E E P L + ++L + +F
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274
Query: 228 GNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSM 287
+ L+ L L + ++ +PS L+ L + L LS+N F + N L + +
Sbjct: 275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334
Query: 288 NNFSGVI-PITIGYLKDLQYLFLEYNRLQGS--IPDSIGDLINLKSLDLSNNNLSGIIPI 344
N + + L++L+ L L ++ ++ S + +L +L+SL+LS N +
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394
Query: 345 SLEKLLDLKDINVSFNKLEGEIPREGSFRNF-------LAE---SFKGNELLCGMPNLQV 394
+ ++ L+ ++++F +L+ + F+N L+ +L G+P LQ
Sbjct: 395 AFKECPQLELLDLAFTRLKV-KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 1e-54
Identities = 69/389 (17%), Positives = 133/389 (34%), Gaps = 32/389 (8%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQ------------NVQLQNLEELLLWGNNFSGTIP 50
F N + + + ++ +L L + L G I
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219
Query: 51 SFIFNAS--KLSRLELQMNSFYGFIPNTFGNLRNLN--RLGLNDNYLTSSTPKLNFLSSL 106
+ N++ L + P F L ++ + L +Y + + ++
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS-----NTF 274
Query: 107 SNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYL 166
L+ + L + P + LS +++ + + SN +L + +
Sbjct: 275 HCFSGLQELDLTATHLSEL-PSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSI 332
Query: 167 GGNKLNGSI-PIALGKLQKLQLLNLEYNQLEGS--IPDDLCRLAALFQLDLGSNKLSGFV 223
GN + L L+ L+ L+L ++ +E S L L+ L L+L N+
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392
Query: 224 PASFGNLTNLRSLHLGSNQITSI--PSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLI 281
+F L L L ++ S NL + LNLS + L L
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452
Query: 282 KIDLSMNNFSGVIPITIGYLKD---LQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNL 338
++L N+F L+ L+ L L + L + L + +DLS+N L
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
Query: 339 SGIIPISLEKLLDLKDINVSFNKLEGEIP 367
+ +L L + +N++ N + +P
Sbjct: 513 TSSSIEALSHLKGIY-LNLASNHISIILP 540
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 3e-52
Identities = 66/349 (18%), Positives = 121/349 (34%), Gaps = 16/349 (4%)
Query: 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYL 93
+ E L N + L+ L+L Y +TF + L+ L L N L
Sbjct: 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93
Query: 94 TSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPE 153
++LS K LK+ F + I + N ++E ++ S +IS
Sbjct: 94 IFMAE-----TALSGPKALKHLFFIQTGISSIDFIPLHNQK-TLESLYLGSNHISSIKLP 147
Query: 154 EISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQL--LNLEYNQLEGSIPDDLCRLAALFQ 211
+ L + N ++ + LQ+ LNL N + I A
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQS 206
Query: 212 LDLGSNKLSGFVPA--SFGNLTNLRSLHLGSNQITSIPSTL---LNLKDILYLNLSSNFF 266
L+ G + + + +L I + L + +NL ++F
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266
Query: 267 TGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLI 326
L ++DL+ + S +P + L L+ L L N+ + S +
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325
Query: 327 NLKSLDLSNNNLSG-IIPISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374
+L L + N + LE L +L+++++S + +E RN
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 7e-50
Identities = 70/378 (18%), Positives = 123/378 (32%), Gaps = 31/378 (8%)
Query: 36 EELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTS 95
+ + IP + + LE N TF L NL L L +
Sbjct: 15 KTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71
Query: 96 STPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEI 155
+ + L + N L + A+ +++ + IS +
Sbjct: 72 IHE-----DTFQSQHRLDTLVLTANPLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPL 125
Query: 156 SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAAL--FQLD 213
N L ++YLG N ++ +KL++L+ + N + +D+ L L+
Sbjct: 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185
Query: 214 LGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP---STLLNLKDILYLNLSSNFFTGPL 270
L N ++G P +F + +SL+ G Q + ++ +
Sbjct: 186 LNGNDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244
Query: 271 PLEIGNLKV--LIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINL 328
P L + I+L + F + T LQ L L L +P + L L
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTL 303
Query: 329 KSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFR------------NFL 376
K L LS N + IS L +++ N E+ G + +
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG-TGCLENLENLRELDLSHDDI 362
Query: 377 AESFKGNELLCGMPNLQV 394
S N L + +LQ
Sbjct: 363 ETSDCCNLQLRNLSHLQS 380
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 2e-47
Identities = 77/352 (21%), Positives = 128/352 (36%), Gaps = 23/352 (6%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQNVQ----------LQNLEELLLWGNNFSGTIPSF 52
+ + T S L L L L L++L+L N F
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS 320
Query: 53 IFNASKLSRLELQMNSFYGFI-PNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKY 111
N L+ L ++ N+ + NL NL L L+ + + +S L +LS+
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH--- 377
Query: 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEI-SNLTNLIAIYLGGNK 170
L+ + S N + A +E+ + + + NL L + L +
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436
Query: 171 LNGSIPIALGKLQKLQLLNLEYNQLEGSI---PDDLCRLAALFQLDLGSNKLSGFVPASF 227
L+ S L LQ LNL+ N + L L L L L LS +F
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496
Query: 228 GNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSM 287
+L + + L N++TS L+ +YLNL+SN + LP + L I+L
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQ 556
Query: 288 NNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLS 339
N T + L++ +L+ + + L+ + LS+ LS
Sbjct: 557 NPLDC----TCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 1e-52
Identities = 82/333 (24%), Positives = 147/333 (44%), Gaps = 28/333 (8%)
Query: 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND 90
+L+++ +L++ G I + L L L N P NL L L +
Sbjct: 42 ELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGT 97
Query: 91 NYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGG 150
N +T +S+L N L+ + +++ I P + NL++ M + + +
Sbjct: 98 NKITD-------ISALQNLTNLRELYLNEDNISDISP--LANLTK-MYSLNLGANHNLS- 146
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210
+SN+T L + + +K+ PI L L L+L YNQ+E P L L +L
Sbjct: 147 DLSPLSNMTGLNYLTVTESKVKDVTPI--ANLTDLYSLSLNYNQIEDISP--LASLTSLH 202
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPL 270
N+++ P N+T L SL +G+N+IT + L NL + +L + +N +
Sbjct: 203 YFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN 259
Query: 271 PLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKS 330
+ +L L +++ N S + + L L LFL N+L + IG L NL +
Sbjct: 260 AV--KDLTKLKMLNVGSNQISDISVL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315
Query: 331 LDLSNNNLSGIIPISLEKLLDLKDINVSFNKLE 363
L LS N+++ I P++ L + + + ++
Sbjct: 316 LFLSQNHITDIRPLA--SLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 8e-48
Identities = 77/337 (22%), Positives = 134/337 (39%), Gaps = 28/337 (8%)
Query: 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND 90
L +L + + + +++L + L NL L LN
Sbjct: 20 DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNG 75
Query: 91 NYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGG 150
N +T +S LSN L N + I + NL+ ++ +++ NIS
Sbjct: 76 NQITD-------ISPLSNLVKLTNLYIGTNKITDISA--LQNLT-NLRELYLNEDNISD- 124
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210
++NLT + ++ LG N S L + L L + ++++ P + L L+
Sbjct: 125 -ISPLANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLY 180
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPL 270
L L N++ P +LT+L NQIT I + N+ + L + +N T
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLS 237
Query: 271 PLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKS 330
PL NL L +++ N S + + L L+ L + N++ S + +L L S
Sbjct: 238 PL--ANLSQLTWLEIGTNQISDINAV--KDLTKLKMLNVGSNQI--SDISVLNNLSQLNS 291
Query: 331 LDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIP 367
L L+NN L + L +L + +S N + P
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 186 bits (473), Expect = 3e-51
Identities = 78/434 (17%), Positives = 130/434 (29%), Gaps = 51/434 (11%)
Query: 3 FSFNKLVGVVPTTIFNVSTLN----SLYLQNVQLQ----------NLEELLLWGNNFSGT 48
S+N + + + + SL + + L EL L GN S
Sbjct: 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSN 219
Query: 49 IPSFIFNA-SKLSRLELQMNSFYG------FIPNTFGNLRNLNRLGLNDNYLTSSTPKLN 101
I + L L + F F P+ L ++ Y + +
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279
Query: 102 FLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGG----------- 150
L+N + S + S+ + QS+ I
Sbjct: 280 KFHCLAN---VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLT 336
Query: 151 -----IPEEISNLTNLIAIYLGGNKLNGSIPIAL--GKLQKLQLLNLEYNQLEGSIPDDL 203
I + L +L + L N L+ S + L+ L+L +N + +
Sbjct: 337 MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANF 395
Query: 204 CRLAALFQLDLGSNKLSGFVPAS-FGNLTNLRSLHLGSNQITSIP-STLLNLKDILYLNL 261
L L LD + L S F +L L L + L L + L +
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455
Query: 262 SSNFFTGPLPLEI-GNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPD 320
+ N F + N L +DLS + L LQ L + +N L
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515
Query: 321 SIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESF 380
L +L +LD S N + I L N++ N + I F ++ E
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA-CICEHQKFLQWVKEQK 574
Query: 381 KG----NELLCGMP 390
+ ++ C P
Sbjct: 575 QFLVNVEQMTCATP 588
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 7e-48
Identities = 85/398 (21%), Positives = 133/398 (33%), Gaps = 40/398 (10%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQN-----------VQLQNLEELLLWGNNFSGTIPS 51
SFN L + + N S L L L L +L L+L GN P
Sbjct: 39 LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98
Query: 52 FIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKY 111
+ L L G L L +L + N++ S + SN
Sbjct: 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS----CKLPAYFSNLTN 154
Query: 112 LKYFSFSNNSLDGILPRAIGNLSQ---SMEIFWMHSCNISGGIPEEISNLTNLIAIYLGG 168
L + S N + I + L + M I I ++ L + L G
Sbjct: 155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRG 213
Query: 169 NKLNGSIP-IALGKLQKLQLLNLEYNQLEG---------SIPDDLCRLAALFQLDLGSNK 218
N + +I L L L + L + + SI + LC + + L
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID-EFRLTYTN 272
Query: 219 LSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLK 278
F L N+ ++ L I + + L++ L++ LK
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQLKQFPTLDLPFLK 331
Query: 279 VLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDL--INLKSLDLSNN 336
L L+MN S I L L YL L N L S S DL +L+ LDLS N
Sbjct: 332 SL---TLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386
Query: 337 NLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374
I+ + L +L+ ++ + L+ + +F +
Sbjct: 387 GAI-IMSANFMGLEELQHLDFQHSTLKR-VTEFSAFLS 422
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 2e-41
Identities = 73/366 (19%), Positives = 122/366 (33%), Gaps = 45/366 (12%)
Query: 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYL 93
+ + + L N N S+L L+L + L +L+ L L N +
Sbjct: 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92
Query: 94 TSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISG-GIP 152
S +P S S L+ L + IG L +++ + I +P
Sbjct: 93 QSFSP-----GSFSGLTSLENLVAVETKLASLESFPIGQLI-TLKKLNVAHNFIHSCKLP 146
Query: 153 EEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQL----LNLEYNQLEGSIPDDLCRLAA 208
SNLTNL+ + L N + L L++ L++ N ++ I D +
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIK 205
Query: 209 LFQLDLGSNKLSGFVPA-SFGNLTNLRSLHLGSNQITSI-------PSTLLNLKDI--LY 258
L +L L N S + NL L L + PS + L D+
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265
Query: 259 LNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRL---- 314
L+ ++ L + + L+ + + + Q L + +L
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP--KHFKWQSLSIIRCQLKQFP 323
Query: 315 ---------------QGSIPDSIGDLINLKSLDLSNNNLSGIIPISLE--KLLDLKDINV 357
+GSI L +L LDLS N LS S L+ +++
Sbjct: 324 TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383
Query: 358 SFNKLE 363
SFN
Sbjct: 384 SFNGAI 389
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 3e-41
Identities = 59/341 (17%), Positives = 110/341 (32%), Gaps = 30/341 (8%)
Query: 38 LLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSST 97
S +P I S ++L N +F N L L L+ + +
Sbjct: 16 YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72
Query: 98 PKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISN 157
+ +L + N + P + L+ S+E ++ I
Sbjct: 73 D-----KAWHGLHHLSNLILTGNPIQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQ 126
Query: 158 LTNLIAIYLGGNKLNG-SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRL----AALFQL 212
L L + + N ++ +P L L ++L YN ++ +DL L L
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186
Query: 213 DLGSNKLSGFVPASFGNLTNLRSLHLGSNQITS--IPSTLLNLKDILYLNLSSNFFTGPL 270
D+ N + +F + L L L N +S + + L NL + L F
Sbjct: 187 DMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245
Query: 271 PLEIGNLKVL--------IKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSI 322
LEI ++ + L+ N + L ++ + L + + +
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDV 303
Query: 323 GDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLE 363
+SL + L + L LK + ++ NK
Sbjct: 304 PKHFKWQSLSIIRCQLKQFPTLDLPF---LKSLTLTMNKGS 341
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 3e-35
Identities = 49/271 (18%), Positives = 90/271 (33%), Gaps = 18/271 (6%)
Query: 118 SNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPI 177
+ L + ++ S + + + SN + L + L ++
Sbjct: 19 MDQKLSKVPD----DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74
Query: 178 ALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLH 237
A L L L L N ++ P L +L L KL+ G L L+ L+
Sbjct: 75 AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134
Query: 238 LGSNQITSI--PSTLLNLKDILYLNLSSNFFTGPLPLEIGNLK----VLIKIDLSMNNFS 291
+ N I S P+ NL ++++++LS N+ ++ L+ V + +D+S+N
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194
Query: 292 GVIPITIGYLKDLQYLFLEYNRLQGSIP-DSIGDLINLKSLDLSNNNLSGIIPIS----- 345
+ +K L L L N +I + +L L L +
Sbjct: 195 FIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253
Query: 346 -LEKLLDLKDINVSFNKLEGEIPREGSFRNF 375
+E L D+ F
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 1e-30
Identities = 52/284 (18%), Positives = 92/284 (32%), Gaps = 20/284 (7%)
Query: 3 FSFNKLVGVVPTTIFNVSTLN------SLYLQNVQLQNLEELLLWGNNFSGTIPS--FIF 54
+L + + +L S+ + V L +L L L N S +
Sbjct: 314 IIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373
Query: 55 NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKY 114
+ L L+L N + F L L L + L T S+ + + L Y
Sbjct: 374 GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE----FSAFLSLEKLLY 428
Query: 115 FSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEI-SNLTNLIAIYLGGNKLNG 173
S + L+ S+ M + + +N TNL + L +L
Sbjct: 429 LDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487
Query: 174 SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNL 233
L +LQLLN+ +N L +L +L LD N++ +L
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSL 547
Query: 234 RSLHLGSNQITSIPS-----TLLNLKDILYLNLSSNFFTGPLPL 272
+L +N + I + + +N+ P+ +
Sbjct: 548 AFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEM 591
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-23
Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 4/154 (2%)
Query: 221 GFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVL 280
G + + N+ + +++ +P + + ++LS N N L
Sbjct: 2 GSLNPCIEVVPNI-TYQCMDQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSEL 58
Query: 281 IKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSG 340
+DLS + L L L L N +Q P S L +L++L L+
Sbjct: 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118
Query: 341 IIPISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374
+ + +L+ LK +NV+ N + F N
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSN 151
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 1e-49
Identities = 50/322 (15%), Positives = 103/322 (31%), Gaps = 22/322 (6%)
Query: 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND 90
E L G+ + + + N N
Sbjct: 10 HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTG 65
Query: 91 NYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGG 150
L ++ L + + L P L ++ + + +
Sbjct: 66 RALKATADLLEDATQPG----RVALELRSVPLP-QFPDQAFRL-SHLQHMTIDAAGLME- 118
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAA-- 208
+P+ + L + L N L ++P ++ L +L+ L++ +P+ L A
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 209 -------LFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNL 261
L L L + +PAS NL NL+SL + ++ ++++ + +L + L+L
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236
Query: 262 SSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDS 321
P G L ++ L + +P+ I L L+ L L +P
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Query: 322 IGDLINLKSLDLSNNNLSGIIP 343
I L + + + + +
Sbjct: 297 IAQLPANCIILVPPHLQAQLDQ 318
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 3e-42
Identities = 52/328 (15%), Positives = 112/328 (34%), Gaps = 48/328 (14%)
Query: 52 FIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKY 111
++S L Q ++ + + N + N +
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR--- 63
Query: 112 LKYFSFSNNSLDGILPRAIGNLSQ-SMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNK 170
+ +L + + +Q + S + P++ L++L + +
Sbjct: 64 ------TGRAL-KATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAG 115
Query: 171 LNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGN- 229
L +P + + L+ L L N L ++P + L L +L + + +P +
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173
Query: 230 --------LTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLI 281
L NL+SL L I S+P+++ NL+++ L + ++ + L I +L L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLE 232
Query: 282 KIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGI 341
++DL L + P G LK L L + +
Sbjct: 233 ELDLRGCTA------------------LR------NYPPIFGGRAPLKRLILKDCSNLLT 268
Query: 342 IPISLEKLLDLKDINVSFNKLEGEIPRE 369
+P+ + +L L+ +++ +P
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 1e-41
Identities = 51/263 (19%), Positives = 88/263 (33%), Gaps = 27/263 (10%)
Query: 27 LQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRL 86
L++ L L P F S L + + +P+T L L
Sbjct: 75 LEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETL 132
Query: 87 GLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCN 146
L N L + +S+++ L+ S LP + +
Sbjct: 133 TLARNPLRA------LPASIASLNRLRELSIRACPELTELPEPLASTD------------ 174
Query: 147 ISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRL 206
E L NL ++ L + S+P ++ LQ L+ L + + L ++ + L
Sbjct: 175 ----ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHL 228
Query: 207 AALFQLDLGSNKLSGFVPASFGNLTNLRSLHL-GSNQITSIPSTLLNLKDILYLNLSSNF 265
L +LDL P FG L+ L L + + ++P + L + L+L
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288
Query: 266 FTGPLPLEIGNLKVLIKIDLSMN 288
LP I L I + +
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 6e-34
Identities = 47/252 (18%), Positives = 90/252 (35%), Gaps = 36/252 (14%)
Query: 149 GGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPD------- 201
G + + +Y G+ L + Q+ + +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61
Query: 202 --------------DLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP 247
+ L+L S L F P L++L+ + + + + +P
Sbjct: 62 TRTGRALKATADLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLMELP 120
Query: 248 STLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIG-------- 299
T+ + L L+ N LP I +L L ++ + +P +
Sbjct: 121 DTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179
Query: 300 -YLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVS 358
L +LQ L LE+ ++ S+P SI +L NLKSL + N+ LS + ++ L L+++++
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR 237
Query: 359 -FNKLEGEIPRE 369
L P
Sbjct: 238 GCTALR-NYPPI 248
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 4e-33
Identities = 41/226 (18%), Positives = 80/226 (35%), Gaps = 11/226 (4%)
Query: 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND 90
+L +L+ + + +P + + L L L N +P + +L L L +
Sbjct: 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRA 159
Query: 91 N----YLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCN 146
L + L+ + LP +I NL Q+++ + +
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANL-QNLKSLKIRNSP 217
Query: 147 ISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNL-EYNQLEGSIPDDLCR 205
+S + I +L L + L G + P G L+ L L + + L ++P D+ R
Sbjct: 218 LSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHR 275
Query: 206 LAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLL 251
L L +LDL +P+ L + + + +
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 35/225 (15%), Positives = 73/225 (32%), Gaps = 28/225 (12%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQN----------VQLQNLEELLLWGNNFSGTIPSFI 53
L+ +P T+ + L +L L L L EL + +P +
Sbjct: 112 DAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPL 170
Query: 54 FNAS---------KLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLS 104
+ L L L+ +P + NL+NL L + ++ L++
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA------LGP 223
Query: 105 SLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAI 164
++ + L+ + P G + ++ + C+ +P +I LT L +
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Query: 165 YLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAAL 209
L G +P + +L ++ + + A
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 17/129 (13%), Positives = 37/129 (28%), Gaps = 9/129 (6%)
Query: 243 ITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLK 302
+ S + L + P + + D + + +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SN 56
Query: 303 DLQYLFLEYNRLQGSIPDSIGDL--INLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFN 360
+ Q L+ + D + D +L+L + L P +L L+ + +
Sbjct: 57 NPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114
Query: 361 KLEGEIPRE 369
L E+P
Sbjct: 115 GLM-ELPDT 122
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 7e-46
Identities = 90/337 (26%), Positives = 145/337 (43%), Gaps = 32/337 (9%)
Query: 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND 90
L + +L N + T+ + +++ L+ L NL ++ ++
Sbjct: 22 ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSN 77
Query: 91 NYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGG 150
N LT ++ L N L +NN + I P + NL+ + + + I+
Sbjct: 78 NQLTD-------ITPLKNLTKLVDILMNNNQIADITP--LANLTN-LTGLTLFNNQITD- 126
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210
+ + NLTNL + L N ++ AL L LQ L+ NQ+ P L L L
Sbjct: 127 -IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLE 180
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPL 270
+LD+ SNK+S + LTNL SL +NQI+ I L L ++ L+L+ N
Sbjct: 181 RLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG 237
Query: 271 PLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKS 330
L +L L +DL+ N S + P + L L L L N++ P + L L +
Sbjct: 238 TL--ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 291
Query: 331 LDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIP 367
L+L+ N L I PIS L +L + + FN + P
Sbjct: 292 LELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP 326
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 3e-45
Identities = 85/391 (21%), Positives = 150/391 (38%), Gaps = 67/391 (17%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQNVQ---------LQNLEELLLWGNNFSGTIPSFI 53
+ V ++ + +L + L NL ++ N + P +
Sbjct: 31 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--L 86
Query: 54 FNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTP--------------- 98
N +KL + + N P NL NL L L +N +T P
Sbjct: 87 KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 144
Query: 99 KLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNL 158
++ +S+LS L+ SF N D + + NL+ ++E + S +S ++ L
Sbjct: 145 TISDISALSGLTSLQQLSFGNQVTD---LKPLANLT-TLERLDISSNKVSD--ISVLAKL 198
Query: 159 TNLIAIYLGGNKLNGSIPI--------------------ALGKLQKLQLLNLEYNQLEGS 198
TNL ++ N+++ P+ L L L L+L NQ+
Sbjct: 199 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL 258
Query: 199 IPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILY 258
P L L L +L LG+N++S P LT L +L L NQ+ I + NLK++ Y
Sbjct: 259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTY 313
Query: 259 LNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSI 318
L L N + P+ +L L ++ N S V + L ++ +L +N++
Sbjct: 314 LTLYFNNISDISPV--SSLTKLQRLFFYNNKVSDVSSL--ANLTNINWLSAGHNQISDLT 369
Query: 319 PDSIGDLINLKSLDLSNNNLSGIIPISLEKL 349
P + +L + L L++ + +
Sbjct: 370 P--LANLTRITQLGLNDQAWTNAPVNYKANV 398
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 4e-42
Identities = 83/369 (22%), Positives = 149/369 (40%), Gaps = 41/369 (11%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEEL--------LLWGNNFSGTIPSFIF 54
N++ + P + N++ LN L L + + ++ L L +GN + P +
Sbjct: 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LA 174
Query: 55 NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKY 114
N + L RL++ N + L NL L +N ++ ++ L L
Sbjct: 175 NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD-------ITPLGILTNLDE 225
Query: 115 FSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGS 174
S + N L I + +L+ + + + IS +S LT L + LG N+++
Sbjct: 226 LSLNGNQLKDIGT--LASLTN-LTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNI 280
Query: 175 IPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLR 234
P L L L L L NQLE P + L L L L N +S P +LT L+
Sbjct: 281 SP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334
Query: 235 SLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVI 294
L +N+++ + S L NL +I +L+ N + P + NL + ++ L+ ++
Sbjct: 335 RLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391
Query: 295 PITIGYLKDLQYLFLEYNRLQGSI-PDSIGDLINLKSLDLSNNNLSGIIPIS--LEKLLD 351
Y ++ N I P +I D + D++ N S +S + +
Sbjct: 392 V---NYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVT 448
Query: 352 LKDINVSFN 360
+ +F+
Sbjct: 449 IGKGTTTFS 457
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 6e-37
Identities = 69/280 (24%), Positives = 115/280 (41%), Gaps = 22/280 (7%)
Query: 88 LNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNI 147
L +T TP +N + + + ++ + +L Q + I
Sbjct: 3 LGSATITQDTP-INQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQ-VTTLQADRLGI 58
Query: 148 SGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLA 207
+ + L NL I N+L P L L KL + + NQ+ P L L
Sbjct: 59 K--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLT 112
Query: 208 ALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFT 267
L L L +N+++ P NLTNL L L SN I+ I + L L + L+ +
Sbjct: 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTD 169
Query: 268 GPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLIN 327
+ NL L ++D+S N S + + L +L+ L N++ P +G L N
Sbjct: 170 ---LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTN 222
Query: 328 LKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIP 367
L L L+ N L I ++ L +L D++++ N++ P
Sbjct: 223 LDELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP 260
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 1e-33
Identities = 69/343 (20%), Positives = 110/343 (32%), Gaps = 42/343 (12%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQN--------VQLQNLEELLLWGNNFSGTIPSFIF 54
S N + + + +++L L N L LE L + N S S +
Sbjct: 141 LSSNTISDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLA 196
Query: 55 NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTP---------------K 99
+ L L N P G L NL+ L LN N L +
Sbjct: 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 254
Query: 100 LNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLT 159
++ L+ LS L N + I P + L+ + ++ + ISNL
Sbjct: 255 ISNLAPLSGLTKLTELKLGANQISNISP--LAGLTA-LTNLELNENQLED--ISPISNLK 309
Query: 160 NLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKL 219
NL + L N ++ P + L KLQ L N++ L L + L G N++
Sbjct: 310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQI 365
Query: 220 SGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKV 279
S P NLT + L L T+ P I + P I +
Sbjct: 366 SDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA-PATISDGGS 422
Query: 280 LIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSI 322
+ D++ N S + G++ +
Sbjct: 423 YTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 3e-44
Identities = 74/403 (18%), Positives = 143/403 (35%), Gaps = 37/403 (9%)
Query: 3 FSFNKLVGVVPTTIFNVSTL----NSLYLQNVQLQ----------NLEELLLWGNNFSGT 48
S NK+ + T + + + SL L + L +L L N S
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN 215
Query: 49 IPSFIFNA-SKLSRLELQMNSFYG------FIPNTFGNLRNLNRLGLNDNYLTSSTPKLN 101
+ + L L + F F + L NL YL +
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL--DD 273
Query: 102 FLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNL 161
+ + + FS + +++ + + Q +E+ L +L
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL------KLKSL 327
Query: 162 IAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLE--GSIPDDLCRLAALFQLDLGSNKL 219
+ NK + + L L+ L+L N L G +L LDL N +
Sbjct: 328 KRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385
Query: 220 SGFVPASFGNLTNLRSLHLGSNQITSIP--STLLNLKDILYLNLSSNFFTGPLPLEIGNL 277
+ ++F L L L + + + S L+L++++YL++S L
Sbjct: 386 I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 278 KVLIKIDLSMNNFSGVI-PITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNN 336
L + ++ N+F P L++L +L L +L+ P + L +L+ L++++N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 337 NLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAES 379
L + ++L L+ I + N + PR +L ++
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 547
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 3e-38
Identities = 80/399 (20%), Positives = 130/399 (32%), Gaps = 41/399 (10%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQN-----------VQLQNLEELLLWGNNFSGTIPS 51
SFN L + + F+ L L L L +L L+L GN
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94
Query: 52 FIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKY 111
S L +L + G+L+ L L + N + S SN
Sbjct: 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS----FKLPEYFSNLTN 150
Query: 112 LKYFSFSNNSLDGILPRAIGNLSQS--MEIFWMHSCNISGGIPEEISNLTNLIAIYLGGN 169
L++ S+N + I + L Q + + S N I L + L N
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210
Query: 170 KLNGSIP-IALGKLQKLQLLNLEY------NQLEGSIPDDLCRLAALFQLDLGSNKLSGF 222
+ ++ + L L++ L LE L L L + L +
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270
Query: 223 ---VPASFGNLTNLRSLHLGSNQITSIP--STLLNLKDILYLNLSSNFFTGPLPLEIGNL 277
+ F LTN+ S L S I + S + + +N F L
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT------LKL 324
Query: 278 KVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQ--GSIPDSIGDLINLKSLDLSN 335
K L ++ + N L L++L L N L G S +LK LDLS
Sbjct: 325 KSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 336 NNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374
N + + + L L+ ++ + L+ ++ F +
Sbjct: 383 NGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLS 419
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 4e-31
Identities = 65/362 (17%), Positives = 112/362 (30%), Gaps = 48/362 (13%)
Query: 49 IPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSN 108
IP + L+L N +F + L L L+ + + + +
Sbjct: 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-----GAYQS 74
Query: 109 CKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGG 168
+L + N + + A S L++L +
Sbjct: 75 LSHLSTLILTGNPIQSLALGA-------------------------FSGLSSLQKLVAVE 109
Query: 169 NKLNGSIPIALGKLQKLQLLNLEYNQL-EGSIPDDLCRLAALFQLDLGSNKLSGFVPASF 227
L +G L+ L+ LN+ +N + +P+ L L LDL SNK+
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Query: 228 GNLTNLR----SLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLE-IGNLKVLIK 282
L + SL L N + I + L L +NF + + I L L
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229
Query: 283 IDLSMNNFSGVIPIT---IGYLKDLQYLFLEYNRLQG------SIPDSIGDLINLKSLDL 333
L + F + L+ L L +E RL I D L N+ S L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289
Query: 334 SNNNLSGIIPIS-LEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNL 392
+ + + S L+ +N F + + F + +P+L
Sbjct: 290 VSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349
Query: 393 QV 394
+
Sbjct: 350 EF 351
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-28
Identities = 52/259 (20%), Positives = 88/259 (33%), Gaps = 18/259 (6%)
Query: 118 SNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPI 177
+ I NL S + + + + L + L ++
Sbjct: 15 MELNFYKIPD----NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 178 ALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLH 237
A L L L L N ++ L++L +L L+ G+L L+ L+
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130
Query: 238 LGSNQITSI--PSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVL----IKIDLSMNNFS 291
+ N I S P NL ++ +L+LSSN ++ L + + +DLS+N +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 292 GVIPITIGYLKDLQYLFLEYNRLQGSIPD-SIGDLINLKSLDL------SNNNLSGIIPI 344
I L L L N ++ I L L+ L + NL
Sbjct: 191 F-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249
Query: 345 SLEKLLDLKDINVSFNKLE 363
+LE L +L L+
Sbjct: 250 ALEGLCNLTIEEFRLAYLD 268
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 5e-44
Identities = 65/366 (17%), Positives = 129/366 (35%), Gaps = 28/366 (7%)
Query: 27 LQNVQLQNLEELLLWGNNFSGTIPSFIF-NASKLSRLELQMNSFYGFIPNTFGNLRNLNR 85
+++ L N + + + +P+ + + ++ L L F + +
Sbjct: 39 FEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK 97
Query: 86 LGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSC 145
L + N + P + N L N L + N + M +
Sbjct: 98 LYMGFNAIRYLPPHV-----FQNVPLLTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNN 151
Query: 146 NISGGIPEEI-SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLC 204
N+ I ++ T+L + L N+L + L + L N+ YN L L
Sbjct: 152 NLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-----TLA 202
Query: 205 RLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSN 264
A+ +LD N ++ L L L N +T LLN ++ ++LS N
Sbjct: 203 IPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN 258
Query: 265 FFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD 324
+ ++ L ++ +S N + + + L+ L L +N L + +
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 316
Query: 325 LINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNE 384
L++L L +N++ + L LK++ +S N + FRN + +
Sbjct: 317 FDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD-CNSLRALFRNVARPAVDDAD 372
Query: 385 LLCGMP 390
C +
Sbjct: 373 QHCKID 378
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 8e-40
Identities = 61/372 (16%), Positives = 129/372 (34%), Gaps = 34/372 (9%)
Query: 18 NVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTF 77
+ + +V + + + +G + + + ++
Sbjct: 14 DSNLQYDCVFYDVHIDMQTQDVYFGFED--------ITLNNQKIVTFKNSTMRKLPAALL 65
Query: 78 GNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSM 137
+ R + L LND + + + ++ N++ + P N+ +
Sbjct: 66 DSFRQVELLNLNDLQIEEIDT-----YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LL 119
Query: 138 EIFWMHSCNISGGIPEEI-SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLE 196
+ + ++S +P I N L + + N L LQ L L N+L
Sbjct: 120 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178
Query: 197 GSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLL-NLKD 255
+ L + +LF ++ N LS + + L N I + + L
Sbjct: 179 -HVDLSL--IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELT- 229
Query: 256 ILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQ 315
L L N T L N L+++DLS N ++ ++ L+ L++ NRL
Sbjct: 230 --ILKLQHNNLTDTAWLL--NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285
Query: 316 GSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNF 375
++ + LK LDLS+N+L + + + L+++ + N + + +
Sbjct: 286 -ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK-LSTHHTL 341
Query: 376 LAESFKGNELLC 387
+ N+ C
Sbjct: 342 KNLTLSHNDWDC 353
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 2e-36
Identities = 60/364 (16%), Positives = 127/364 (34%), Gaps = 38/364 (10%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQN-----------VQLQNLEELLLWGNNFSGTIPS 51
F + + + + + + L L + +++L + N +P
Sbjct: 52 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPP 110
Query: 52 FIF-NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCK 110
+F N L+ L L+ N F N L L +++N L +
Sbjct: 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-----DTFQATT 165
Query: 111 YLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNK 170
L+ S+N L + I +L N+S + ++ + + N
Sbjct: 166 SLQNLQLSSNRLTHVDLSLIPSL---------FHANVSYNLLSTLAIPIAVEELDASHNS 216
Query: 171 LNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNL 230
+N + + +L +L L++N L + L L ++DL N+L + F +
Sbjct: 217 IN-VVRGPV--NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271
Query: 231 TNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNF 290
L L++ +N++ ++ + + L+LS N + L + L N+
Sbjct: 272 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI 330
Query: 291 SGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLL 350
+ + L+ L L +N + ++ N+ + + + I LE L
Sbjct: 331 V---TLKLSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGL 385
Query: 351 DLKD 354
K+
Sbjct: 386 CCKE 389
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 1e-41
Identities = 82/404 (20%), Positives = 150/404 (37%), Gaps = 58/404 (14%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLE 63
++++ P + L++ + EL L S ++P + L L
Sbjct: 42 AWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPH---LESLV 97
Query: 64 LQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLD 123
NS +P +L++L N L+ P L +L SNN L+
Sbjct: 98 ASCNSL-TELPELPQSLKSLLVDNNNLKALSDLPPLLEYLG------------VSNNQLE 144
Query: 124 GILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQ 183
+ + N S ++I + + ++ +P+ +L + G N+L +P L L
Sbjct: 145 KLPE--LQNSS-FLKIIDVDNNSLKK-LPDLPPSLEFI---AAGNNQLE-ELP-ELQNLP 195
Query: 184 KLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQI 243
L + + N L+ +PD L + G+N L NL L +++ +N +
Sbjct: 196 FLTAIYADNNSLK-KLPDLPLSLE---SIVAGNNILE--ELPELQNLPFLTTIYADNNLL 249
Query: 244 TSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIP-------- 295
++P +L+ LN+ N+ T LP +L L + + S + P
Sbjct: 250 KTLPDLPPSLE---ALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 305
Query: 296 ---IT--IGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLL 350
I L+ L + N+L +P L+ L S N+L+ + E
Sbjct: 306 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAEVP----ELPQ 357
Query: 351 DLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQV 394
+LK ++V +N L E P L + E+ NL+
Sbjct: 358 NLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQ 400
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 4e-37
Identities = 72/397 (18%), Positives = 132/397 (33%), Gaps = 81/397 (20%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQL----QNLEELLLWGNNFSGTIPSFIFNASKL 59
S N L +P ++ +L L LE L + N +P + N+S L
Sbjct: 99 SCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFL 155
Query: 60 SRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSN 119
+++ NS +P+ +L + +N L L L N +L N
Sbjct: 156 KIIDVDNNSL-KKLPDLPPSLEFIA---AGNNQLEE-------LPELQNLPFLTAIYADN 204
Query: 120 NSLDGILPRAIGNLS------------------QSMEIFWMHSCNISGGIPEEISNLTNL 161
NSL LP +L + + + + +P+ +L L
Sbjct: 205 NSLKK-LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEAL 262
Query: 162 IAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSG 221
+ N L +P L L + ++ L P L+ L+ SN++
Sbjct: 263 ---NVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIRS 311
Query: 222 FVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLI 281
+L L++ +N++ +P+ L+ L S N +P NLK L
Sbjct: 312 L----CDLPPSLEELNVSNNKLIELPALPPRLE---RLIASFNHLAE-VPELPQNLKQL- 362
Query: 282 KIDLSMNNFSGVIPITIGYLKD----------------LQYLFLEYNRLQGSIPDSIGDL 325
+ N P ++D L+ L +E N L+ PD
Sbjct: 363 --HVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPE-- 416
Query: 326 INLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKL 362
+++ L +++ + + E L+D +
Sbjct: 417 -SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 7e-37
Identities = 66/339 (19%), Positives = 120/339 (35%), Gaps = 48/339 (14%)
Query: 29 NVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGL 88
NV L+E L +N + +P N + + + P G R + L
Sbjct: 7 NVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65
Query: 89 NDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNIS 148
D +N L LP +L E +++
Sbjct: 66 RDCLDRQ----------------AHELELNNLGLS-SLPELPPHL----ESLVASCNSLT 104
Query: 149 GGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAA 208
+PE +L +L+ L+ P L+ L + NQLE +P +L +
Sbjct: 105 -ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSF 154
Query: 209 LFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTG 268
L +D+ +N L +L + G+NQ+ +P L NL + + +N
Sbjct: 155 LKIIDVDNNSLKKL----PDLPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKK 209
Query: 269 PLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINL 328
LP +L+ + N + L L ++ + N L+ ++PD +L
Sbjct: 210 -LPDLPLSLESI---VAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPP---SL 259
Query: 329 KSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIP 367
++L++ +N L+ +P + L L F+ L P
Sbjct: 260 EALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPP 297
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-32
Identities = 54/308 (17%), Positives = 97/308 (31%), Gaps = 44/308 (14%)
Query: 72 FIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIG 131
FI + L + + LT N K + + + + P G
Sbjct: 2 FINPRNVSNTFLQEPLRHSSNLTE------MPVEAENVKSKTEYYNAWSEWERNAPPGNG 55
Query: 132 NLSQSMEIFWMHSCNISG------------GIPEEISNLTNLIAIYLGGNKLNGSIPIAL 179
M + + C +PE +L +L N L +P
Sbjct: 56 EQR-EMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESL---VASCNSLT-ELPELP 110
Query: 180 GKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLG 239
L+ L + N L P L L + +N+L +P N + L+ + +
Sbjct: 111 QSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVD 161
Query: 240 SNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIG 299
+N + +P +L+ ++ +N LP E+ NL L I N+ + +
Sbjct: 162 NNSLKKLPDLPPSLE---FIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL--- 213
Query: 300 YLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSF 359
L+ + N L + +L L ++ NN L +P L L +
Sbjct: 214 -PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYL 269
Query: 360 NKLEGEIP 367
L
Sbjct: 270 TDLPELPQ 277
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-32
Identities = 69/361 (19%), Positives = 127/361 (35%), Gaps = 61/361 (16%)
Query: 22 LNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFN-------------ASKLSRLELQMNS 68
L + ++ +++ E + + P + LEL
Sbjct: 23 LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82
Query: 69 FYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPR 128
+P +L +L + N LT + K L + + +L + P
Sbjct: 83 L-SSLPELPPHLESLV---ASCNSLTE------LPELPQSLKSLLVDNNNLKALSDLPP- 131
Query: 129 AIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLL 188
+E + + + +P E+ N + L I + N L +P L+ +
Sbjct: 132 -------LLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEF---I 178
Query: 189 NLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS 248
NQLE +P +L L L + +N L +L S+ G+N + +P
Sbjct: 179 AAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNNILEELPE 232
Query: 249 TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLF 308
L NL + + +N LP +L+ L ++ N + +P L L
Sbjct: 233 -LQNLPFLTTIYADNNLLKT-LPDLPPSLEAL---NVRDNYLTD-LPELPQSLTFLDVSE 286
Query: 309 LEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPR 368
++ L P NL L+ S+N + + + L+++NVS NKL E+P
Sbjct: 287 NIFSGLSELPP-------NLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLI-ELPA 334
Query: 369 E 369
Sbjct: 335 L 335
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-29
Identities = 68/357 (19%), Positives = 118/357 (33%), Gaps = 63/357 (17%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQN-------VQLQNLEELLLWGNNFSGTIPSFIFNA 56
S N+L + + N S L + + N +LE + N +P N
Sbjct: 139 SNNQLEKL--PELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE-ELPELQ-NL 194
Query: 57 SKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFS 116
L+ + NS + +L + +N L L L N +L
Sbjct: 195 PFLTAIYADNNS----LKKLPDLPLSLESIVAGNNILEE-------LPELQNLPFLTTIY 243
Query: 117 FSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIP 176
NN L LP +L E + ++ +PE +LT L + L+ +P
Sbjct: 244 ADNNLL-KTLPDLPPSL----EALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLS-ELP 296
Query: 177 IALGKL--------------QKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGF 222
L L L+ LN+ N+L +P RL +L N L+
Sbjct: 297 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-E 351
Query: 223 VPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIK 282
VP NL+ LH+ N + P +++D+ + + +P NLK L
Sbjct: 352 VPEL---PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAE-----VPELPQNLKQL-- 401
Query: 283 IDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLS 339
+ N P ++ L + R+ + L+ +++
Sbjct: 402 -HVETNPLR-EFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 2e-41
Identities = 84/407 (20%), Positives = 143/407 (35%), Gaps = 51/407 (12%)
Query: 27 LQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRL 86
++ L + + + T+P + ++ L + N+ +P LR L
Sbjct: 34 MRACLNNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNL-TSLPALPPELRTLE-- 87
Query: 87 GLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCN 146
++ N LTS L FS L LP + L N
Sbjct: 88 -VSGNQLTS------LPVLPPGLLELSIFSNPLTHLPA-LPSGLCKLW--------IFGN 131
Query: 147 ISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRL 206
+P L L + N+L S+P +L KL N NQL S+P L
Sbjct: 132 QLTSLPVLPPGLQEL---SVSDNQLA-SLPALPSELCKLWAYN---NQLT-SLPMLPSGL 183
Query: 207 AALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFF 266
+L + N+L+ P L L + + N++TS+P+ LK L +S N
Sbjct: 184 Q---ELSVSDNQLASL-PTLPSELYKLWAYN---NRLTSLPALPSGLK---ELIVSGNRL 233
Query: 267 TGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLI 326
T LP+ LK L +S N + +P+ L L + N+L +P+S+ L
Sbjct: 234 TS-LPVLPSELKEL---MVSGNRLTS-LPMLPS---GLLSLSVYRNQLT-RLPESLIHLS 284
Query: 327 NLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELL 386
+ +++L N LS +L ++ + + + L + + L+
Sbjct: 285 SETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA-AADWLV 343
Query: 387 CGMPNLQVPPCR-TRIHHTSRKNGLLIGIRRLTYLELFQATNGFSEN 432
P R + + + RL+ E F GF
Sbjct: 344 PAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQ 390
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 2e-29
Identities = 66/376 (17%), Positives = 126/376 (33%), Gaps = 68/376 (18%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQ-------NLEELLLWGNNFSGTIPSFIFNA 56
+ L +P + + +L + + L L L + GN + ++P
Sbjct: 48 GESGL-TTLPDCLPA--HITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVLPPGL 103
Query: 57 SKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFS 116
+LS + +P L L + N LTS + L S
Sbjct: 104 LELSIFSNPLTH----LPALPSGLCKLW---IFGNQLTS------LPVLPPGLQEL---S 147
Query: 117 FSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIP 176
S+N L LP L + W ++ ++ +P S L L + N+L S+P
Sbjct: 148 VSDNQLAS-LPALPSELCK----LWAYNNQLTS-LPMLPSGLQEL---SVSDNQLA-SLP 197
Query: 177 IALGKLQKLQLLN-----------------LEYNQLEGSIPDDLCRLAALFQLDLGSNKL 219
+L KL N + N+L S+P L +L + N+L
Sbjct: 198 TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVLPSELK---ELMVSGNRL 253
Query: 220 SGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKV 279
+ +P + L SL + NQ+T +P +L++L +NL N + + +
Sbjct: 254 TS-LPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309
Query: 280 LIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLD-LSNNNL 338
+ F + L ++ +P G+ +
Sbjct: 310 APGYSGPIIRFDMAGASAPRETRALHLAAADW-----LVPAREGEPAPADRWHMFGQEDN 364
Query: 339 SGIIPISLEKLLDLKD 354
+ + L++L + ++
Sbjct: 365 ADAFSLFLDRLSETEN 380
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 156 bits (395), Expect = 9e-41
Identities = 64/366 (17%), Positives = 130/366 (35%), Gaps = 28/366 (7%)
Query: 27 LQNVQLQNLEELLLWGNNFSGTIPSFIF-NASKLSRLELQMNSFYGFIPNTFGNLRNLNR 85
+++ L N + + + +P+ + + ++ L L F + +
Sbjct: 45 FEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK 103
Query: 86 LGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSC 145
L + N + P + N L N L + N + M +
Sbjct: 104 LYMGFNAIRYLPPHV-----FQNVPLLTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNN 157
Query: 146 NISGGIPEEI-SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLC 204
N+ I ++ T+L + L N+L + L + L N+ YN L ++
Sbjct: 158 NLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-TLAI--- 209
Query: 205 RLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSN 264
A+ +LD N ++ L L L N +T LLN ++ ++LS N
Sbjct: 210 -PIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN 264
Query: 265 FFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD 324
+ ++ L ++ +S N + + + L+ L L +N L + +
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 322
Query: 325 LINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNE 384
L++L L +N++ + L LK++ +S N + FRN + +
Sbjct: 323 FDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD-CNSLRALFRNVARPAVDDAD 378
Query: 385 LLCGMP 390
C +
Sbjct: 379 QHCKID 384
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 7e-37
Identities = 60/368 (16%), Positives = 127/368 (34%), Gaps = 34/368 (9%)
Query: 22 LNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLR 81
+V + + + +G + + + ++ + R
Sbjct: 24 QYDCVFYDVHIDMQTQDVYFGFED--------ITLNNQKIVTFKNSTMRKLPAALLDSFR 75
Query: 82 NLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFW 141
+ L LND + + + ++ N++ + P N+ + +
Sbjct: 76 QVELLNLNDLQIEEIDT-----YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL-LTVLV 129
Query: 142 MHSCNISGGIPEEI-SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIP 200
+ ++S +P I N L + + N L LQ L L N+L +
Sbjct: 130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD 187
Query: 201 DDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYL 259
L + +LF ++ N LS + + L N I + + L L
Sbjct: 188 LSL--IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELT---IL 237
Query: 260 NLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIP 319
L N T + N L+++DLS N ++ ++ L+ L++ NRL ++
Sbjct: 238 KLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALN 294
Query: 320 DSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAES 379
+ LK LDLS+N+L + + + L+++ + N + + + +
Sbjct: 295 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK-LSTHHTLKNLT 351
Query: 380 FKGNELLC 387
N+ C
Sbjct: 352 LSHNDWDC 359
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 2e-35
Identities = 59/360 (16%), Positives = 122/360 (33%), Gaps = 38/360 (10%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQN-----------VQLQNLEELLLWGNNFSGTIPS 51
F + + + + + + L L + +++L + N +P
Sbjct: 58 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPP 116
Query: 52 FIF-NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCK 110
+F N L+ L L+ N F N L L +++N L +
Sbjct: 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-----DTFQATT 171
Query: 111 YLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNK 170
L+ S+N L + I +L N+S + ++ + + N
Sbjct: 172 SLQNLQLSSNRLTHVDLSLIPSL---------FHANVSYNLLSTLAIPIAVEELDASHNS 222
Query: 171 LNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNL 230
+N + +L +L L++N L + L L ++DL N+L + F +
Sbjct: 223 INV---VRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277
Query: 231 TNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNF 290
L L++ +N++ ++ + + L+LS N + L + L N+
Sbjct: 278 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI 336
Query: 291 SGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLL 350
+ + L+ L L +N + N+ + + + I LE L
Sbjct: 337 V---TLKLSTHHTLKNLTLSHNDWDCN--SLRALFRNVARPAVDDADQHCKIDYQLEHGL 391
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 3e-32
Identities = 57/324 (17%), Positives = 120/324 (37%), Gaps = 24/324 (7%)
Query: 48 TIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLS 107
I S + + + M + + L N + ++ + + L
Sbjct: 18 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA-----ALLD 72
Query: 108 NCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEI-SNLTNLIAIYL 166
+ + ++ + ++ ++ I A +++ +M I +P + N+ L + L
Sbjct: 73 SFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL 130
Query: 167 GGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDD-LCRLAALFQLDLGSNKLSGFVPA 225
N L+ KL L++ N LE I DD +L L L SN+L+
Sbjct: 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV--- 186
Query: 226 SFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDL 285
+ +L ++ N ++++ + ++ L+ S N + L + L
Sbjct: 187 DLSLIPSLFHANVSYNLLSTLAI-PIAVE---ELDASHNSINV---VRGPVNVELTILKL 239
Query: 286 SMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPIS 345
NN + + L + L YN L+ + + L+ L +SNN L + +
Sbjct: 240 QHNNLTD-TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY 296
Query: 346 LEKLLDLKDINVSFNKLEGEIPRE 369
+ + LK +++S N L + R
Sbjct: 297 GQPIPTLKVLDLSHNHLL-HVERN 319
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 4e-28
Identities = 52/279 (18%), Positives = 101/279 (36%), Gaps = 24/279 (8%)
Query: 102 FLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLS----QSMEIFWMHSCNISGGIPEEISN 157
+ SN +Y F + +D + +I + + + +
Sbjct: 16 YKCIDSNLQYDCVFY--DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 73
Query: 158 LTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDL-CRLAALFQLDLGS 216
+ + L ++ A +Q L + +N + +P + + L L L
Sbjct: 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLER 132
Query: 217 NKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPLPLEIG 275
N LS F N L +L + +N + I T + L LSSN T +++
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLS 189
Query: 276 NLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSN 335
+ L ++S N S T+ ++ L +N + + + + L L L +
Sbjct: 190 LIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQH 241
Query: 336 NNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374
NNL+ L L ++++S+N+LE +I F
Sbjct: 242 NNLTDT--AWLLNYPGLVEVDLSYNELE-KIM-YHPFVK 276
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 9e-41
Identities = 53/333 (15%), Positives = 110/333 (33%), Gaps = 47/333 (14%)
Query: 49 IPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSN 108
I N ++ ++ +S + + + N+ L L+ N L+ + + L+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA-----ADLAP 56
Query: 109 CKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGG 168
L+ + S+N L L + +L+ L + L
Sbjct: 57 FTKLELLNLSSNVLYETLD---------------------------LESLSTLRTLDLNN 89
Query: 169 NKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFG 228
N + L ++ L+ N + + + L +NK++ G
Sbjct: 90 NYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEG 141
Query: 229 NLTNLRSLHLGSNQITSIPSTLL--NLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLS 286
+ ++ L L N+I ++ L + + +LNL NF + ++ L +DLS
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLS 199
Query: 287 MNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGI-IPIS 345
N + + + ++ L N+L I ++ NL+ DL N +
Sbjct: 200 SNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257
Query: 346 LEKLLDLKDINVSFNKLEGEIPREGSFRNFLAE 378
K ++ + K E L
Sbjct: 258 FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 6e-37
Identities = 47/316 (14%), Positives = 100/316 (31%), Gaps = 21/316 (6%)
Query: 32 LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDN 91
+ + ++ + S +A + L+L N L L L+ N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 92 YLTSSTP-----KL-------NFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEI 139
L + L N++ L ++ +NN++ + +
Sbjct: 69 VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGK----KN 124
Query: 140 FWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNG-SIPIALGKLQKLQLLNLEYNQLEGS 198
++ + I+ + + + + L N+++ + L+ LNL+YN +
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D 183
Query: 199 IPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILY 258
+ + A L LDL SNKL+ F+ F + + + L +N++ I L +++ +
Sbjct: 184 VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241
Query: 259 LNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSI 318
+L N F L K ++ + +
Sbjct: 242 FDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300
Query: 319 PDSIGDLINLKSLDLS 334
LI L
Sbjct: 301 APFADRLIALGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 3e-35
Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 13/221 (5%)
Query: 150 GIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAAL 209
I E N + + L ++ ++ L+L N L DL L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 210 FQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGP 269
L+L SN L +L+ LR+L L +N + + I L+ ++N +
Sbjct: 61 ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISR- 113
Query: 270 LPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQG-SIPDSIGDLINL 328
+ + I L+ N + + + G +QYL L+ N + + + L
Sbjct: 114 --VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 329 KSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPRE 369
+ L+L N + + LK +++S NKL + E
Sbjct: 172 EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLA-FMGPE 209
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 8e-31
Identities = 35/202 (17%), Positives = 78/202 (38%), Gaps = 11/202 (5%)
Query: 174 SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNL 233
+I + ++ + + L+ ++ + +LDL N LS A T L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 234 RSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGV 293
L+L SN + L +L + L+L++N+ E+ + + + NN S
Sbjct: 61 ELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR- 113
Query: 294 IPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGI-IPISLEKLLDL 352
++ + + ++L N++ G ++ LDL N + + L
Sbjct: 114 --VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 353 KDINVSFNKLEGEIPREGSFRN 374
+ +N+ +N + ++ + F
Sbjct: 172 EHLNLQYNFIY-DVKGQVVFAK 192
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-27
Identities = 49/357 (13%), Positives = 106/357 (29%), Gaps = 84/357 (23%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLE 63
S N L + + + L L L + L +
Sbjct: 42 SGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-------------------------- 75
Query: 64 LQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLD 123
+L L L LN+NY+ L ++ +NN++
Sbjct: 76 -------------LESLSTLRTLDLNNNYVQ----------ELLVGPSIETLHAANNNIS 112
Query: 124 GILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQ 183
+ S IYL NK+ + G
Sbjct: 113 RV----------------------------SCSRGQGKKNIYLANNKITMLRDLDEGCRS 144
Query: 184 KLQLLNLEYNQLEG-SIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQ 242
++Q L+L+ N+++ + + L L+L N + L++L L SN+
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNK 202
Query: 243 ITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLK 302
+ + + + +++L +N + + + L DL N F + + K
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSK 260
Query: 303 DLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPI-SLEKLLDLKDINVS 358
+ + + ++ + + + +L +P ++L+ L +
Sbjct: 261 NQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 3e-40
Identities = 72/356 (20%), Positives = 129/356 (36%), Gaps = 41/356 (11%)
Query: 37 ELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSS 96
+L F +P I ++ L+L N + F + +L L LN+N +++
Sbjct: 15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71
Query: 97 TPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEIS 156
P + +N L+ +N L I +
Sbjct: 72 EPG-----AFNNLFNLRTLGLRSNRLKLIPLGVF-------------------------T 101
Query: 157 NLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDD-LCRLAALFQLDLG 215
L+NL + + NK+ + L L+ L + N L I L +L QL L
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLE 160
Query: 216 SNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPLPLEI 274
L+ + +L L L L I +I + L + L +S + +
Sbjct: 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220
Query: 275 GNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLS 334
L + ++ N + V + + +L L++L L YN + + +L+ L+ + L
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280
Query: 335 NNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNF--LAE-SFKGNELLC 387
L+ + P + L L+ +NVS N+L + E F + L N L C
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLE-ESVFHSVGNLETLILDSNPLAC 334
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 1e-35
Identities = 75/342 (21%), Positives = 123/342 (35%), Gaps = 46/342 (13%)
Query: 11 VVPTTIFNVSTLNSLYLQN-----------VQLQNLEELLLWGNNFSGTIPSFIF-NASK 58
VP I + L L +LEEL L N S + F N
Sbjct: 25 AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFN 81
Query: 59 LSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFS 118
L L L+ N F L NL +L +++N + + L N LK
Sbjct: 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM--FQDLYN---LKSLEVG 136
Query: 119 NNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIA 178
+N L I RA L+ S+E + CN++ E +S+L LI + L +N +
Sbjct: 137 DNDLVYISHRAFSGLN-SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195
Query: 179 LGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHL 238
+L +L++L + + ++ + L L + L+ + +L LR L+L
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255
Query: 239 GSNQITSIPS-TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPIT 297
N I++I L L + + L + F G
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLA----------------VVEPYAFRG----- 294
Query: 298 IGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLS 339
L L+ L + N+L + NL++L L +N L+
Sbjct: 295 ---LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 3e-28
Identities = 53/266 (19%), Positives = 104/266 (39%), Gaps = 24/266 (9%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIF-NASKLSRL 62
N+L + +S L L + ++ + ++F + L L
Sbjct: 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIV--------------ILLDYMFQDLYNLKSL 133
Query: 63 ELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSL 122
E+ N F L +L +L L LTS +LS+ L + ++
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-----EALSHLHGLIVLRLRHLNI 188
Query: 123 DGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIP-IALGK 181
+ I + L + +++ + + NL ++ + L ++P +A+
Sbjct: 189 NAIRDYSFKRLYR-LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRH 246
Query: 182 LQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSN 241
L L+ LNL YN + L L L ++ L +L+ P +F L LR L++ N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306
Query: 242 QITSIPSTLL-NLKDILYLNLSSNFF 266
Q+T++ ++ ++ ++ L L SN
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 4e-15
Identities = 48/218 (22%), Positives = 83/218 (38%), Gaps = 30/218 (13%)
Query: 234 RSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGV 293
R++ + ++P + + L+L N E + L +++L+ N S V
Sbjct: 14 RAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71
Query: 294 IPITIGYLKDLQYLFLEYNRLQGSIPDSI-GDLINLKSLDLSNNNLSGIIPISLEKLLDL 352
P L +L+ L L NRL+ IP + L NL LD+S N + ++ + L +L
Sbjct: 72 EPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130
Query: 353 KDINVSFNKLEGEIPREGSFRN-------FLAE---SFKGNELLCGMPNLQVPPCRTRIH 402
K + V N L I +F L + + E L + L R+
Sbjct: 131 KSLEVGDNDLV-YIS-HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI----VLRLR 184
Query: 403 H---TSRKNGLLIGIRRLTYLELFQATNGFSENNLIDR 437
H + ++ + RL LE+ S +D
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEI-------SHWPYLDT 215
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 18/120 (15%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRL 62
+ L V + ++ L L L + +E + +L +
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG-----SMLHE--------LLRLQEI 277
Query: 63 ELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSL 122
+L P F L L L ++ N LT+ + S+ N L+ +N L
Sbjct: 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE--SVFHSVGN---LETLILDSNPL 332
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 7e-40
Identities = 51/355 (14%), Positives = 114/355 (32%), Gaps = 26/355 (7%)
Query: 32 LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDN 91
+ + ++ + S +A + L+L N L L L+ N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 92 YLTSSTP-----KL-------NFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEI 139
L + L N++ L ++ +NN++ + +
Sbjct: 69 VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGK----KN 124
Query: 140 FWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNG-SIPIALGKLQKLQLLNLEYNQLEGS 198
++ + I+ + + + + L N+++ + L+ LNL+YN +
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D 183
Query: 199 IPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILY 258
+ + A L LDL SNKL+ F+ F + + + L +N++ I L +++ +
Sbjct: 184 VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241
Query: 259 LNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSI 318
+L N F L K ++ + +
Sbjct: 242 FDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300
Query: 319 PDSIGDLINLKSLDLSNNNLSG----IIPISLEKLLDLKDINVSFNKLEGEIPRE 369
LI LK + + + G + E ++I+ + + +
Sbjct: 301 APFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQ 354
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 5e-33
Identities = 44/221 (19%), Positives = 85/221 (38%), Gaps = 13/221 (5%)
Query: 150 GIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAAL 209
I E N + + L ++ ++ L+L N L DL L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 210 FQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGP 269
L+L SN L +L+ LR+L L +N + + +++ L+ ++N +
Sbjct: 61 ELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQELL-VGPSIE---TLHAANNNISR- 113
Query: 270 LPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQG-SIPDSIGDLINL 328
+ + I L+ N + + + G +QYL L+ N + + + L
Sbjct: 114 --VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 329 KSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPRE 369
+ L+L N + + + LK +++S NKL + E
Sbjct: 172 EHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA-FMGPE 209
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-32
Identities = 45/368 (12%), Positives = 98/368 (26%), Gaps = 34/368 (9%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQN---------VQLQNLEELLLWGNNFSGTIPSFIF 54
S N L + + + L L L + L L L L N +
Sbjct: 42 SGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE-----LL 96
Query: 55 NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKY 114
+ L N+ + +N+ L +N +T ++Y
Sbjct: 97 VGPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRD-----LDEGCRSRVQY 148
Query: 115 FSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGS 174
N +D + + S ++E + I + ++ L + L NKL
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLA-F 205
Query: 175 IPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLS-GFVPASFGNLTNL 233
+ + ++L N+L I L L DL N G + F +
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264
Query: 234 RSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSM----N 288
+++ + + + + L L + + ++
Sbjct: 265 QTVAK--QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322
Query: 289 NFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEK 348
+ + + + + + + I +L+ L +
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382
Query: 349 LLDLKDIN 356
+L
Sbjct: 383 HAELDGTL 390
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 1e-28
Identities = 36/194 (18%), Positives = 78/194 (40%), Gaps = 11/194 (5%)
Query: 182 LQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSN 241
+ ++ + + L+ ++ + +LDL N LS A T L L+L SN
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 242 QITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYL 301
+ L +L + L+L++N+ E+ + + + NN S ++
Sbjct: 69 VLYETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR---VSCSRG 119
Query: 302 KDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLD-LKDINVSFN 360
+ + ++L N++ G ++ LDL N + + L D L+ +N+ +N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 361 KLEGEIPREGSFRN 374
+ ++ + F
Sbjct: 180 FIY-DVKGQVVFAK 192
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 1e-18
Identities = 47/360 (13%), Positives = 91/360 (25%), Gaps = 36/360 (10%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQN------------VQLQNLEELLLWGNNFSGTIPS 51
+ NK+ + S + L L+ LE L L N +
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG 186
Query: 52 FIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLS---- 107
+ +KL L+L N F+ F + + + L +N L L F +L
Sbjct: 187 QVVF-AKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244
Query: 108 -----NCKYLKYFSFSNNSLDGILPRAIGNLS-------QSMEIFWMHSCNISGGIPEEI 155
+C L+ F N + + + + L+ + +
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304
Query: 156 SNLTNLIAIYLGGNKLNGS----IPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQ 211
L L GS + + + ++ Q I R A
Sbjct: 305 DRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKIT 364
Query: 212 LDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPL- 270
L+ L V L + + + L +
Sbjct: 365 LEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYV 424
Query: 271 PLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKS 330
+ + D+ + + + K L ++ + + NL S
Sbjct: 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLAS 484
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 4e-39
Identities = 96/463 (20%), Positives = 160/463 (34%), Gaps = 58/463 (12%)
Query: 3 FSFNKLVGVVPTTIF-NVSTLNSLYLQN-----------VQLQNLEELLLWGNNFSGTIP 50
+ F L T + ++T L L L+ L+ L L TI
Sbjct: 11 YRFCNL-----TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65
Query: 51 SFIF-NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNC 109
F N L L+L + Y P+ F L +L L L L+ + K + +L
Sbjct: 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA- 124
Query: 110 KYLKYFSFSNNSLDGI-LPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLT--NLIAIYL 166
L S N + + L + G L+ S++ S I E+ L L L
Sbjct: 125 --LTRLDLSKNQIRSLYLHPSFGKLN-SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181
Query: 167 GGNKLNGSIPIALGKLQK------LQLLNLEYNQLEGSIPD------------DLCRLAA 208
N L + + GK L++L++ N I L
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241
Query: 209 LFQLDLGSNKLSGFVPASFGNL--TNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNF 265
+ G + + +F L +++R L L + S+ S LKD+ LNL+ N
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301
Query: 266 FTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDL 325
L L ++LS N + L + Y+ L+ N + + L
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361
Query: 326 INLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFL------AES 379
L++LDL +N L+ ++ + + DI +S NKL +P+ N + E+
Sbjct: 362 EKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLEN 415
Query: 380 FKGNELLCGMPNLQVPPCRTRIHHTSRKNGLLIGIRRLTYLEL 422
L +P+LQ+ + + L L L
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 5e-38
Identities = 86/413 (20%), Positives = 141/413 (34%), Gaps = 55/413 (13%)
Query: 4 SFNKL--VGVVPTTIFNVSTLNSLYLQN------------VQLQNLEELLLWGNNFSGTI 49
F L + N+ L L L +L +L+ + N +
Sbjct: 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LV 163
Query: 50 PSFIFN---ASKLSRLELQMNSFYGFIPNTFGNLRN------LNRLGLNDNYLTSSTPKL 100
LS L NS Y + +G N L L ++ N T
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN 223
Query: 101 NF-------LSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQ-SMEIFWMHSCNISGGIP 152
SL ++ F +++ L++ S+ + +
Sbjct: 224 FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283
Query: 153 EEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQL 212
L +L + L NK+N A L LQ+LNL YN L + L + +
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343
Query: 213 DLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPST------------LLNLKDI---- 256
DL N ++ +F L L++L L N +T+I L+ L I
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTA 403
Query: 257 LYLNLSSNFFTGPLPLEI-GNLKVLIKIDLSMNNFSGVIPI-TIGYLKDLQYLFLEYNRL 314
++LS N L + L + L+ N FS T L+ LFL N L
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463
Query: 315 QGSI-----PDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKL 362
Q + D L +L+ L L++N L+ + P L L+ ++++ N+L
Sbjct: 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 3e-26
Identities = 77/377 (20%), Positives = 131/377 (34%), Gaps = 47/377 (12%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPS 51
S + + + L L L + L NL+ L L N + S
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYS 331
Query: 52 FIF-NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCK 110
F K++ ++LQ N TF L L L L DN LT+ +
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----------IHFIP 381
Query: 111 YLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISG-GIPEEISNLTNLIAIYLGGN 169
+ S N L + ++ + + + + I + + +L + L N
Sbjct: 382 SIPDIFLSGNKL-----VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436
Query: 170 KLNG-SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCR-----LAALFQLDLGSNKLSGFV 223
+ + S + L+ L L N L+ + +LC L+ L L L N L+
Sbjct: 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496
Query: 224 PASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKI 283
P F +LT LR L L SN++T + L ++ L++S N P P +L +
Sbjct: 497 PGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILDISRNQLLAPNPDVFVSLS---VL 552
Query: 284 DLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIP 343
D++ N F +L N +I D+ + S +L +
Sbjct: 553 DITHNKFICEC--------ELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLST 604
Query: 344 ISLEKLLDLKDINVSFN 360
++ LK + S
Sbjct: 605 EGCDEEEVLKSLKFSLF 621
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 2e-35
Identities = 76/430 (17%), Positives = 146/430 (33%), Gaps = 63/430 (14%)
Query: 4 SFNKLVGVVPTTIF-NVSTLNSLYLQNVQ------------LQNLEELLLWGNNFSGTIP 50
N + T++F N++ L +L + NV+ L +L EL + +
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165
Query: 51 SFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKL---------- 100
+ + + L L ++ + L ++ L L D L
Sbjct: 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225
Query: 101 ----------------NFLSSLSNCKYLKYFSFSNNSLDGIL------PRAIGNLSQ--- 135
L L L F + +L+G+ + L +
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285
Query: 136 -SMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQ 194
++ + + + S L + I + +K+ L+ L+ L+L N
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345
Query: 195 LEGSIPDD---LCRLAALFQLDLGSNKLS--GFVPASFGNLTNLRSLHLGSNQITSIPST 249
+ + +L L L N L L NL SL + N +P +
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS 405
Query: 250 LLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFL 309
+ + +LNLSS ++ + L +D+S NN +L LQ L++
Sbjct: 406 CQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNNLDSFSL----FLPRLQELYI 458
Query: 310 EYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPRE 369
N+L+ ++PD+ L + +S N L + ++L L+ I + N + PR
Sbjct: 459 SRNKLK-TLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516
Query: 370 GSFRNFLAES 379
+L ++
Sbjct: 517 DYLSRWLNKN 526
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 4e-34
Identities = 59/365 (16%), Positives = 113/365 (30%), Gaps = 39/365 (10%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPS 51
L ++ ++ ++ L L + L ++ L L N + S
Sbjct: 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS 214
Query: 52 FIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSN--- 108
+ S ++ +F L L R L + + LN L +
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES 274
Query: 109 ----------CKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNL 158
++ L L L + ++ + + + +L
Sbjct: 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK-VKRITVENSKVFLVPCSFSQHL 333
Query: 159 TNLIAIYLGGNKLNGSI---PIALGKLQKLQLLNLEYNQLE--GSIPDDLCRLAALFQLD 213
+L + L N + G LQ L L N L + L L L LD
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393
Query: 214 LGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLE 273
+ N P S +R L+L S I + + + + + L++S+N L
Sbjct: 394 ISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDS-FSLF 449
Query: 274 IGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDL 333
+ L+ L +S N + ++ L + + N+L+ L +L+ + L
Sbjct: 450 LPRLQEL---YISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504
Query: 334 SNNNL 338
N
Sbjct: 505 HTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 1e-33
Identities = 62/380 (16%), Positives = 123/380 (32%), Gaps = 29/380 (7%)
Query: 12 VPTTIFNVSTLNSLYLQN-----------VQLQNLEELLLWGNNFSGTIPSFIF-NASKL 59
+P+ + + + SL L NL+ L+L + + TI F + L
Sbjct: 20 IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSL 76
Query: 60 SRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFS- 118
L+L N + FG L +L L L N + L S N L+
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT----LGVTSLFPNLTNLQTLRIGN 132
Query: 119 NNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIA 178
+ I L+ S+ + + ++ + + ++ ++ + L ++ + I
Sbjct: 133 VETFSEIRRIDFAGLT-SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191
Query: 179 LGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHL 238
L ++ L L L L + + + S SF L L L
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251
Query: 239 GSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITI 298
+++ TL L D S+ + +E ++ L + +
Sbjct: 252 ELSEVEFDDCTLNGLGDF--NPSESDVVSELGKVETVTIRRL---HIPQFYLFYDLSTVY 306
Query: 299 GYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGII---PISLEKLLDLKDI 355
L+ ++ + +E +++ L +L+ LDLS N + L+ +
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366
Query: 356 NVSFNKLEGEIPREGSFRNF 375
+S N L
Sbjct: 367 VLSQNHLRSMQKTGEILLTL 386
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-26
Identities = 43/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%)
Query: 143 HSCNISG----GIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGS 198
C+ IP ++ + ++ L NK+ L LQ+L L+ +++
Sbjct: 8 GVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65
Query: 199 IPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP--STLLNLKDI 256
D L +L LDL N LS + FG L++L+ L+L N ++ S NL ++
Sbjct: 66 EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125
Query: 257 LYLNLSS-NFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQ 315
L + + F+ ++ L L ++++ + ++ ++D+ +L L +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185
Query: 316 GSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKL 362
+ L +++ L+L + NL+ L + +
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 4/143 (2%)
Query: 233 LRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSG 292
S TSIPS L + L+LS N T ++ L + L + +
Sbjct: 7 SGVCDGRSRSFTSIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64
Query: 293 VIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGI-IPISLEKLLD 351
+ L L++L L N L G L +LK L+L N + + L +
Sbjct: 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124
Query: 352 LKDINVSFNKLEGEIPREGSFRN 374
L+ + + + EI F
Sbjct: 125 LQTLRIGNVETFSEIR-RIDFAG 146
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 4e-35
Identities = 69/328 (21%), Positives = 112/328 (34%), Gaps = 44/328 (13%)
Query: 22 LNSLYLQNVQLQ--------NLEELLLWGNNFSGTIPSFIF-NASKLSRLELQMNSFYGF 72
L + ++ L+ + L L N + I F N L L L N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKI 91
Query: 73 IPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGN 132
P F L L RL L+ N L K+ + L N + +
Sbjct: 92 SPGAFAPLVKLERLYLSKNQLKELPEKM-----PKTLQEL---RVHENEITKVRKSVFNG 143
Query: 133 LSQSMEIFWMHSCNI-SGGIPEEI-SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNL 190
L+Q M + + + + S GI + L I + + +IP L L L+L
Sbjct: 144 LNQ-MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHL 199
Query: 191 EYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTL 250
+ N++ L L L +L L N +S S N +LR LHL +N++ +P L
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259
Query: 251 LNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLE 310
+ K I + L +N + + N+F P + L
Sbjct: 260 ADHKYIQVVYLHNNNIS----------------AIGSNDFCP--PGYNTKKASYSGVSLF 301
Query: 311 YNRLQGSI--PDSIGDLINLKSLDLSNN 336
N +Q P + + ++ L N
Sbjct: 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-32
Identities = 54/266 (20%), Positives = 105/266 (39%), Gaps = 20/266 (7%)
Query: 132 NLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLE 191
+L + + + I+ + NL NL + L NK++ P A L KL+ L L
Sbjct: 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108
Query: 192 YNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSI---PS 248
NQL+ +P+ + L +L + N+++ + F L + + LG+N + S
Sbjct: 109 KNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165
Query: 249 TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLF 308
+K + Y+ ++ T + G L ++ L N + V ++ L +L L
Sbjct: 166 AFQGMKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222
Query: 309 LEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPR 368
L +N + S+ + +L+ L L+NN L +P L ++ + + N + I
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIG- 279
Query: 369 EGSFRNFLAESFKGNELLCGMPNLQV 394
+ F +
Sbjct: 280 --------SNDFCPPGYNTKKASYSG 297
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 283 IDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGII 342
+ S +P + D L L+ N++ +L NL +L L NN +S I
Sbjct: 36 VQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92
Query: 343 PISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374
P + L+ L+ + +S N+L+ E+P E +
Sbjct: 93 PGAFAPLVKLERLYLSKNQLK-ELP-EKMPKT 122
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 20/107 (18%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQ----------NLEELLLWGNNFSGTIPSFI 53
SFN + V ++ N L L+L N +L ++ + L NN S I S
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSND 282
Query: 54 F-------NASKLSRLELQMN--SFYGFIPNTFGNLRNLNRLGLNDN 91
F + S + L N ++ P+TF + + L +
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-33
Identities = 68/328 (20%), Positives = 122/328 (37%), Gaps = 45/328 (13%)
Query: 22 LNSLYLQNVQLQ--------NLEELLLWGNNFSGTIPSFIF-NASKLSRLELQMNSFYGF 72
L + ++ L+ + L L N+ S + F L L L N
Sbjct: 35 LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKI 93
Query: 73 IPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGN 132
F LR L +L ++ N+L P L S+ L +N + +
Sbjct: 94 HEKAFSPLRKLQKLYISKNHLVEIPPNL-----PSSLVEL---RIHDNRIRKVPKGVFSG 145
Query: 133 LSQSMEIFWMHSCNI-SGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLE 191
L +M M + + G + L + + KL IP L + L L+L+
Sbjct: 146 LR-NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLD 201
Query: 192 YNQLEGSIPD-DLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTL 250
+N+++ +I DL R + L++L LG N++ S L LR LHL +N+++ +P+ L
Sbjct: 202 HNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL 260
Query: 251 LNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLE 310
+LK + + L +N T + +N+F V + L
Sbjct: 261 PDLKLLQVVYLHTNNIT----------------KVGVNDFCPVGFGV--KRAYYNGISLF 302
Query: 311 YNRLQGSI--PDSIGDLINLKSLDLSNN 336
N + P + + + ++ N
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 76/340 (22%), Positives = 120/340 (35%), Gaps = 54/340 (15%)
Query: 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYL 93
+L + +P I + L+LQ N + F L++L L L +N +
Sbjct: 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90
Query: 94 TSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPE 153
+ K + S + L+ S N L I P NL S+ +H I +P+
Sbjct: 91 SKIHEK-----AFSPLRKLQKLYISKNHLVEIPP----NLPSSLVELRIHDNRIRK-VPK 140
Query: 154 EI-SNLTNLIAIYLGGNKL-NGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQ 211
+ S L N+ I +GGN L N KL L + +L IP DL L +
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNE 197
Query: 212 LDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPL 270
L L NK+ + L L LG NQI I + +L L + L+L +N +
Sbjct: 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS--- 254
Query: 271 PLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSI-------G 323
+P + LK LQ ++L N + + +
Sbjct: 255 ----------------------RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGV 291
Query: 324 DLINLKSLDLSNNNLS--GIIPISLEKLLDLKDINVSFNK 361
+ L NN + + P + + D I K
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 6e-31
Identities = 61/279 (21%), Positives = 110/279 (39%), Gaps = 25/279 (8%)
Query: 118 SNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPI 177
S+ L + P+ +S + + + +IS ++ L +L A+ L NK++
Sbjct: 41 SDLGLKAV-PK---EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK 96
Query: 178 ALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLH 237
A L+KLQ L + N L IP +L ++L +L + N++ F L N+ +
Sbjct: 97 AFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153
Query: 238 LGSNQITSI---PSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVI 294
+G N + + P LK + YL +S TG + + L ++ L N +
Sbjct: 154 MGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG---IPKDLPETLNELHLDHNKIQAIE 209
Query: 295 PITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKD 354
+ L L L +N+++ S+ L L+ L L NN LS +P L L L+
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268
Query: 355 INVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQ 393
+ + N + ++ F
Sbjct: 269 VYLHTNNIT-KVG---------VNDFCPVGFGVKRAYYN 297
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 47/164 (28%)
Query: 232 NLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFS 291
+LR + + ++P + D L+L +N + +L ++F
Sbjct: 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDIS----------------ELRKDDFK 75
Query: 292 GVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGI---IPISLEK 348
G L+ L L L N++ + L L+ L +S N+L I +P SL +
Sbjct: 76 G--------LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVE 127
Query: 349 L-LD-----------------LKDINVSFNKLEGEIPREGSFRN 374
L + + I + N LE G+F
Sbjct: 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 7e-33
Identities = 81/399 (20%), Positives = 133/399 (33%), Gaps = 71/399 (17%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQNVQ------------LQNLEELLLWGNNFSGTIP 50
S N + + T+ + L L ++ L +L L L N F +
Sbjct: 37 LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLE 95
Query: 51 SFIFNA-SKLSRLELQMNSFYGFI--PNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLS 107
+ FN + L L L + G + N F L +L L L DN + P F ++
Sbjct: 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF-LNMR 154
Query: 108 NCKYLKYFSFSNNSLDGILPRAIGNLS---------QSMEIFWMHSCNISGGIPEEISNL 158
+ N + I + N S+ + M+ +
Sbjct: 155 R---FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211
Query: 159 TNLIAIYLGGNKLNGSIPIA---LGKLQKLQLLNLEYNQLEG---------SIPDDLCR- 205
T++ + L GN S+ K+Q L L + G + +
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 206 --LAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLS 262
+ + DL +K+ + + F + T+L L L N+I I L +L LNLS
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331
Query: 263 SNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSI 322
NF + F L L+ L L YN ++ ++ D
Sbjct: 332 QNFLG----------------SIDSRMFEN--------LDKLEVLDLSYNHIR-ALGDQS 366
Query: 323 GD-LINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFN 360
L NLK L L N L + ++L L+ I + N
Sbjct: 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-31
Identities = 68/346 (19%), Positives = 127/346 (36%), Gaps = 38/346 (10%)
Query: 59 LSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFS 118
++ ++L +NS +F L++L L + F LS+ L
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF-RGLSS---LIILKLD 87
Query: 119 NNSLDGILPRAIGNLSQSMEIFWMHSCNI-SGGIPEEI-SNLTNLIAIYLGGNKLNGSIP 176
N + A L+ ++E+ + CN+ + LT+L + L N + P
Sbjct: 88 YNQFLQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146
Query: 177 -IALGKLQKLQLLNLEYNQLEGSIPDDLCRLAA--LFQLDLGSNKL--------SGFVPA 225
+++ +L+L +N+++ +DL L L S L
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206
Query: 226 SFGNLTNLRSLHLGSNQITSIPS----TLLNLKDILYLNLSSNF----------FTGPLP 271
+ T++ +L L N + + I L LS+++ F P
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266
Query: 272 LEIGNLKV--LIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD-LINL 328
L+ + DLS + ++ + DL+ L L N + I D+ L +L
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHL 325
Query: 329 KSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374
L+LS N L I E L L+ +++S+N + + + SF
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALG-DQSFLG 369
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-26
Identities = 65/350 (18%), Positives = 109/350 (31%), Gaps = 41/350 (11%)
Query: 4 SFNKLVGVVPTTIF-NVSTLNSLYLQNVQLQ-----------NLEELLLWGNNF-SGTIP 50
V+ F +S+L L L Q NLE L L N +
Sbjct: 62 EQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS 121
Query: 51 SFIF-NASKLSRLELQMNSFYGFIPNT-FGNLRNLNRLGLNDNYLTSSTPK-LNFLSSLS 107
F + L L L+ N+ P + F N+R + L L N + S + L
Sbjct: 122 GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181
Query: 108 ----NCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIA 163
+ + L S+ + + + +
Sbjct: 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDAIAGTK 240
Query: 164 IY-------------LGGNKLNGSIPIALGKLQ--KLQLLNLEYNQLEGSIPDDLCR-LA 207
I G L+ ++ +L +++ ++ +
Sbjct: 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFT 299
Query: 208 ALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLL-NLKDILYLNLSSNFF 266
L QL L N+++ +F LT+L L+L N + SI S + NL + L+LS N
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
Query: 267 TGPLPLEI-GNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQ 315
L + L L ++ L N V L LQ ++L N
Sbjct: 360 RA-LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 4e-21
Identities = 49/277 (17%), Positives = 93/277 (33%), Gaps = 37/277 (13%)
Query: 159 TNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCR-LAALFQLDLGSN 217
++ + L N + + +LQ LQ L +E I ++ R L++L L L N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 218 KLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNL 277
+ +F L NL L L + LS NFF L
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAV-------------LSGNFFK--------PL 128
Query: 278 KVLIKIDLSMNNFSGVIPITI-GYLKDLQYLFLEYNRLQGSIPDSIGD-----------L 325
L + L NN + P + ++ L L +N+++ SI + L
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRL 187
Query: 326 INLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNEL 385
++ D++ L + K + +++S N + + F + +A + + +
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA--KRFFDAIAGTKIQSLI 245
Query: 386 LCGMPNLQVPPCRTRIHHTSRKNGLLIGIRRLTYLEL 422
L N+ T + + +L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 8e-33
Identities = 61/330 (18%), Positives = 115/330 (34%), Gaps = 57/330 (17%)
Query: 57 SKLSRLELQMNSFYGFIPNT----FGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNC--K 110
+ L NSFY I T F + L +S L C
Sbjct: 6 PINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRN------EAVSLLKECLIN 59
Query: 111 YLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNK 170
+ +L LP + + + + + +PE ++L L N+
Sbjct: 60 QFSELQLNRLNLS-SLPDNLP---PQITVLEITQNALIS-LPELPASLEYL---DACDNR 111
Query: 171 LNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNL 230
L+ ++P L+ L +++ NQL +P+ L ++ +N+L+ +P
Sbjct: 112 LS-TLPELPASLKHL---DVDNNQLT-MLPELPALLE---YINADNNQLT-MLPEL---P 159
Query: 231 TNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNF 290
T+L L + +NQ+T +P +L+ L++S+N LP
Sbjct: 160 TSLEVLSVRNNQLTFLPELPESLEA---LDVSTNLLES-LPAVPVRNHHS---------- 205
Query: 291 SGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLL 350
+ + NR+ IP++I L ++ L +N LS I SL +
Sbjct: 206 ----------EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254
Query: 351 DLKDINVSFNKLEGEIPREGSFRNFLAESF 380
D + ++ + LA++
Sbjct: 255 AQPDYHGPRIYFSMSDGQQNTLHRPLADAV 284
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-27
Identities = 47/254 (18%), Positives = 93/254 (36%), Gaps = 35/254 (13%)
Query: 27 LQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRL 86
L+ + EL L N S ++P + +++ LE+ N+ +P +L L+
Sbjct: 53 LKECLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNAL-ISLPELPASLEYLD-- 106
Query: 87 GLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCN 146
DN L++ ++ K+L NN L +LP L E +
Sbjct: 107 -ACDNRLST------LPELPASLKHLD---VDNNQLT-MLPELPALL----EYINADNNQ 151
Query: 147 ISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRL 206
++ +PE ++L L + N+L +P L+ L++ N LE S+P R
Sbjct: 152 LT-MLPELPTSLEVL---SVRNNQLT-FLPELPESLEA---LDVSTNLLE-SLPAVPVRN 202
Query: 207 AAL----FQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLS 262
N+++ +P + +L ++ L N ++S L+ +
Sbjct: 203 HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261
Query: 263 SNFFTGPLPLEIGN 276
+ +
Sbjct: 262 PRIYFSMSDGQQNT 275
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 4e-11
Identities = 55/333 (16%), Positives = 94/333 (28%), Gaps = 50/333 (15%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLE 63
N+L +P + L L + N QL L EL + L +
Sbjct: 108 CDNRLS-TLPELPAS---LKHLDVDNNQLTMLPELP-----------------ALLEYIN 146
Query: 64 LQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLD 123
N +P +L L+ + +N LT L +L S N L+
Sbjct: 147 ADNNQL-TMLPELPTSLEVLS---VRNNQLTFLPELPESLEAL---------DVSTNLLE 193
Query: 124 GILPRAIGNLSQSME---IFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALG 180
LP S E F I+ IPE I +L I L N L+ I +L
Sbjct: 194 S-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251
Query: 181 KLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGS 240
+ + S L + + + +
Sbjct: 252 QQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW--FPENKQSDVSQIWHAFEHEEHA 309
Query: 241 NQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIG- 299
N ++ L + N S F + + L ++ + +
Sbjct: 310 NTFSAFLDRLSDTVS--ARNTSG--FREQVAAWLEKLSASAELRQQSFAVAADATESCED 365
Query: 300 ----YLKDLQYLFLEYNRLQGSIPDSIGDLINL 328
+L+ L + +G + G L++L
Sbjct: 366 RVALTWNNLRKTLLVHQASEGLFDNDTGALLSL 398
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 1e-32
Identities = 50/237 (21%), Positives = 84/237 (35%), Gaps = 7/237 (2%)
Query: 132 NLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLN--GSIPIALGKLQKLQLLN 189
+ S + S + LT L + L N L+ G + L+ L+
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84
Query: 190 LEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPAS-FGNLTNLRSLHLGSNQITSIPS 248
L +N + ++ + L L LD + L S F +L NL L + +
Sbjct: 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143
Query: 249 -TLLNLKDILYLNLSSNFFTGPLPLEI-GNLKVLIKIDLSMNNFSGVIPITIGYLKDLQY 306
L + L ++ N F +I L+ L +DLS + P L LQ
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Query: 307 LFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLD-LKDINVSFNKL 362
L + +N L +L+ LD S N++ L+ L +N++ N
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 7e-30
Identities = 54/263 (20%), Positives = 99/263 (37%), Gaps = 14/263 (5%)
Query: 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYL 93
+ E+ + ++P+ I S +RLEL+ N F L L +L L+ N L
Sbjct: 8 SGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64
Query: 94 TSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPE 153
+ ++ LKY S N + + L +E N+
Sbjct: 65 SFKGCCSQSDFGTTS---LKYLDLSFNGV-ITMSSNFLGLE-QLEHLDFQHSNLKQMSEF 119
Query: 154 EI-SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDD-LCRLAALFQ 211
+ +L NLI + + + L L++L + N + + D L L
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179
Query: 212 LDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPL 270
LDL +L P +F +L++L+ L++ N S+ + L + L+ S N
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-S 238
Query: 271 PLEI--GNLKVLIKIDLSMNNFS 291
+ L ++L+ N+F+
Sbjct: 239 KKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 51/233 (21%), Positives = 98/233 (42%), Gaps = 14/233 (6%)
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLE--GSIPDDLCRLAA 208
+P I ++ + L NKL KL +L L+L N L G +
Sbjct: 22 VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79
Query: 209 LFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP--STLLNLKDILYLNLSSNFF 266
L LDL N + + ++F L L L + + + S L+L++++YL++S
Sbjct: 80 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 267 TGPLPLEI-GNLKVLIKIDLSMNNF-SGVIPITIGYLKDLQYLFLEYNRLQGSIPDSI-G 323
I L L + ++ N+F +P L++L +L L +L+ + +
Sbjct: 139 RV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFN 196
Query: 324 DLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFL 376
L +L+ L++S+NN + + L L+ ++ S N + + ++F
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSK-KQELQHFP 247
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 56/270 (20%), Positives = 90/270 (33%), Gaps = 50/270 (18%)
Query: 12 VPTTIFNVSTLNSLYLQN-----------VQLQNLEELLLWGNNFS-GTIPSFIF-NASK 58
VPT I S+ L L++ +L L +L L N S S +
Sbjct: 22 VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79
Query: 59 LSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFS 118
L L+L N + + F L L L + L + + SL N L Y S
Sbjct: 80 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRN---LIYLDIS 134
Query: 119 NNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSI-PI 177
+ + L++L + + GN + P
Sbjct: 135 HTHTRVAFNGI-------------------------FNGLSSLEVLKMAGNSFQENFLPD 169
Query: 178 ALGKLQKLQLLNLEYNQLEGSIPDD-LCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSL 236
+L+ L L+L QLE + L++L L++ N + L +L+ L
Sbjct: 170 IFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228
Query: 237 HLGSNQITSIP-STLLNLKDIL-YLNLSSN 264
N I + L + L +LNL+ N
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 8e-13
Identities = 42/241 (17%), Positives = 73/241 (30%), Gaps = 67/241 (27%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLE 63
SFN ++ + + + L L Q+ L+ + E
Sbjct: 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE-------------------------- 118
Query: 64 LQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLD 123
+ F +LRNL L ++ + + + LS+ L+ + NS
Sbjct: 119 ----------FSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSS---LEVLKMAGNSFQ 163
Query: 124 GILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQ 183
P+ + L NL + L +L P A L
Sbjct: 164 ENFL------------------------PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199
Query: 184 KLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNL-TNLRSLHLGSNQ 242
LQ+LN+ +N L +L LD N + + ++L L+L N
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259
Query: 243 I 243
Sbjct: 260 F 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 4e-12
Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 18/155 (11%)
Query: 3 FSFNKLVGVVPTTIF-NVSTLNSLYLQNVQLQ-----------NLEELLLWGNNFSGTIP 50
F + L + ++F ++ L L + + + +LE L + GN+F
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167
Query: 51 SFIF-NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNC 109
IF L+ L+L P F +L +L L ++ N S
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-----FPYKCL 222
Query: 110 KYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHS 144
L+ +S N + + + + S+ +
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 283 IDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLS--G 340
I + + +P I L LE N+LQ L L L LS+N LS G
Sbjct: 12 IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68
Query: 341 IIPISLEKLLDLKDINVSFNKL 362
S LK +++SFN +
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNGV 90
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-32
Identities = 61/360 (16%), Positives = 122/360 (33%), Gaps = 51/360 (14%)
Query: 13 PTTIFNVSTLNSLYLQNVQLQ---------NLEELLLWGNNFSGTIPSFIFNASKLSRLE 63
+ ++TL SL N + L +L+ NN + T+ + + L+ L
Sbjct: 35 TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLA 91
Query: 64 LQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLD 123
N L L L + N LT +S L Y + + N+L
Sbjct: 92 CDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL--------DVSQNPLLTYLNCARNTLT 140
Query: 124 GILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQ 183
I ++S + ++ + +++ T L + NK+ + + + +
Sbjct: 141 EI------DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE---LDVSQNK 191
Query: 184 KLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQI 243
L LN + N + + DL + L LD SNKL+ LT L N +
Sbjct: 192 LLNRLNCDTNNIT-KL--DLNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPL 245
Query: 244 TSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKD 303
T + + L + L+ +++ + LI + + + +
Sbjct: 246 TELDVS--TLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRK--IKELDVTHNTQ 298
Query: 304 LQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLE 363
L L + + + + L L L+N L+ + + LK ++ ++
Sbjct: 299 LYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTE---LDVSHNTKLKSLSCVNAHIQ 352
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-26
Identities = 62/299 (20%), Positives = 105/299 (35%), Gaps = 38/299 (12%)
Query: 65 QMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDG 124
Q SF + P+ N + + S L N+S+
Sbjct: 7 QTQSFNDWFPDD--NFASEVAAAFEMQATDT--------ISEEQLATLTSLDCHNSSITD 56
Query: 125 ILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQK 184
+ I L+ + S NI+ ++S TNL + NKL + + L K
Sbjct: 57 MTG--IEKLT-GLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLTN---LDVTPLTK 107
Query: 185 LQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT 244
L LN + N+L D+ + L L+ N L+ + T L L N+
Sbjct: 108 LTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKI 161
Query: 245 SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDL 304
+ + + L+ S N T L++ K+L +++ NN + + + L
Sbjct: 162 TKL-DVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITK---LDLNQNIQL 214
Query: 305 QYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLE 363
+L N+L I + L L D S N L+ + +L KL L + L
Sbjct: 215 TFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTDLL 267
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 4e-21
Identities = 48/316 (15%), Positives = 102/316 (32%), Gaps = 35/316 (11%)
Query: 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND 90
L EL N + + ++L+ L+ N + LNRL +
Sbjct: 146 HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDT 200
Query: 91 NYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGG 150
N +T L+ + L + S+N L I + L+ + F ++
Sbjct: 201 NNITK----LDL----NQNIQLTFLDCSSNKLTEID---VTPLT-QLTYFDCSVNPLTE- 247
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210
+ +S L+ L ++ L I L +L E + + D+ L+
Sbjct: 248 LD--VSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLY 300
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPL 270
LD + ++ L L+L + ++T + + + + L+ +
Sbjct: 301 LLDCQAAGITEL---DLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQD-F 354
Query: 271 PLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQG---SIPDSIGDLIN 327
+G + L + + T+ + + G +I G + +
Sbjct: 355 S-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYD 413
Query: 328 LKSLDLSNNNLSGIIP 343
+ ++ NLS P
Sbjct: 414 QATNTITWENLSTDNP 429
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 18/182 (9%)
Query: 186 QLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITS 245
L + PDD + ++ S L L SL ++ IT
Sbjct: 2 TLKAGQTQSFNDWFPDD-----NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD 56
Query: 246 IPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQ 305
+ + L + L +SN T L++ L + N + + + L L
Sbjct: 57 MTG-IEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLTN---LDVTPLTKLT 109
Query: 306 YLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGE 365
YL + N+L + L L+ + N L+ I + L +++ NK +
Sbjct: 110 YLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITK 163
Query: 366 IP 367
+
Sbjct: 164 LD 165
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 3e-12
Identities = 38/303 (12%), Positives = 87/303 (28%), Gaps = 36/303 (11%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQL--------QNLEELLLWGNNFSGTIPSFIFN 55
SFNK+ + + LN L + L L N + I +
Sbjct: 178 SFNKITEL---DVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT-EID--VTP 231
Query: 56 ASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYF 115
++L+ + +N +T L L+ L L++ L YF
Sbjct: 232 LTQLTYFDCSVNPLTELDVSTLSKLTTLH---CIQTDLLEI--------DLTHNTQLIYF 280
Query: 116 SFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSI 175
L + + + + + + I+ ++S L+ +YL +L +
Sbjct: 281 QAEGCRKIKELD--VTHNT-QLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-EL 333
Query: 176 PIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRS 235
+ KL+ L+ ++ + ++ AL + + N + +
Sbjct: 334 DV--SHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIA 389
Query: 236 LHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIP 295
+ P + +Y ++ L + + + + P
Sbjct: 390 VSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTP 449
Query: 296 ITI 298
Sbjct: 450 FEA 452
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 1e-30
Identities = 72/261 (27%), Positives = 111/261 (42%), Gaps = 17/261 (6%)
Query: 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYL 93
+++ N +P I + L L N N+F +LR+L L L+ N++
Sbjct: 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 94 TSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPE 153
+ + L+N L +N L I A LS ++ W+ + I IP
Sbjct: 101 RTIEIGA--FNGLAN---LNTLELFDNRLTTIPNGAFVYLS-KLKELWLRNNPIE-SIPS 153
Query: 154 EI-SNLTNLIAIYLGGNKLNGSIPI-ALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQ 211
+ + +L + LG K I A L L+ LNL L IP +L L L +
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDE 211
Query: 212 LDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPL 270
LDL N LS P SF L +L+ L + +QI I NL+ ++ +NL+ N T L
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL-L 270
Query: 271 PLEI-GNLKVLIKIDLSMNNF 290
P ++ L L +I L N +
Sbjct: 271 PHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-30
Identities = 59/246 (23%), Positives = 110/246 (44%), Gaps = 10/246 (4%)
Query: 118 SNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPI 177
+L + P +S + + +H I +L +L + L N +
Sbjct: 51 VRKNLREV-PD---GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG 106
Query: 178 ALGKLQKLQLLNLEYNQLEGSIPDD-LCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSL 236
A L L L L N+L +IP+ L+ L +L L +N + +F + +LR L
Sbjct: 107 AFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165
Query: 237 HLGS-NQITSIPS-TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVI 294
LG +++ I L ++ YLNL+ +P + L L ++DLS N+ S +
Sbjct: 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIR 223
Query: 295 PITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKD 354
P + L LQ L++ +++Q ++ +L +L ++L++NNL+ + L L+
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283
Query: 355 INVSFN 360
I++ N
Sbjct: 284 IHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 7e-29
Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 13/243 (5%)
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDD-LCRLAAL 209
+P+ IS TN + L N++ + L+ L++L L N + +I LA L
Sbjct: 58 VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANL 114
Query: 210 FQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTG 268
L+L N+L+ +F L+ L+ L L +N I SIPS + + L+L
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174
Query: 269 PLPLEI-GNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLIN 327
+ L L ++L+M N IP + L L L L N L P S L++
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232
Query: 328 LKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNF--LAE-SFKGNE 384
L+ L + + + I + + L L +IN++ N L +P F L N
Sbjct: 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLP-HDLFTPLHHLERIHLHHNP 290
Query: 385 LLC 387
C
Sbjct: 291 WNC 293
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 9e-26
Identities = 57/263 (21%), Positives = 89/263 (33%), Gaps = 47/263 (17%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLE 63
N++ + + ++ L L L ++ +E
Sbjct: 72 HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE--------------------------- 104
Query: 64 LQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLD 123
F L NLN L L DN LT+ LS LK NN ++
Sbjct: 105 ----------IGAFNGLANLNTLELFDNRLTTIPNGA--FVYLSK---LKELWLRNNPIE 149
Query: 124 GILPRAIGNLSQSMEIFWMHSCNISGGIPEEI-SNLTNLIAIYLGGNKLNGSIPIALGKL 182
I A + S+ + I E L+NL + L L IP L L
Sbjct: 150 SIPSYAFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPL 206
Query: 183 QKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQ 242
KL L+L N L P L L +L + +++ +F NL +L ++L N
Sbjct: 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266
Query: 243 ITSIP-STLLNLKDILYLNLSSN 264
+T +P L + ++L N
Sbjct: 267 LTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 16/130 (12%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQN---------VQLQNLEELLLWGNNFSGTIPSFIF 54
+L + +S L L L L L+EL L GN+ S I F
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLS-AIRPGSF 227
Query: 55 -NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLK 113
L +L + + N F NL++L + L N LT + + L + L+
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH--DLFTPLHH---LE 282
Query: 114 YFSFSNNSLD 123
+N +
Sbjct: 283 RIHLHHNPWN 292
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 2e-30
Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 10/246 (4%)
Query: 118 SNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPI 177
+ L + P+ + + + NI + +L +L + LG N +
Sbjct: 62 TRRGLSEV-PQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG 117
Query: 178 ALGKLQKLQLLNLEYNQLEGSIPDD-LCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSL 236
A L L L L N L IP L+ L +L L +N + +F + +L L
Sbjct: 118 AFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176
Query: 237 HLGS-NQITSIPS-TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVI 294
LG ++ I L ++ YLNL +P + L L ++++S N+F +
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIR 234
Query: 295 PITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKD 354
P + L L+ L++ +++ ++ L +L L+L++NNLS + L L +
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294
Query: 355 INVSFN 360
+++ N
Sbjct: 295 LHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 6e-30
Identities = 60/256 (23%), Positives = 97/256 (37%), Gaps = 20/256 (7%)
Query: 20 STLNSLYLQNVQLQ--------NLEELLLWGNNFSGTIPSFIF-NASKLSRLELQMNSFY 70
+ + + L N L L NN I + F + L L+L NS
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIR 112
Query: 71 GFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAI 130
F L +LN L L DN+LT LS L+ NN ++ I A
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGA--FEYLSK---LRELWLRNNPIESIPSYAF 167
Query: 131 GNLSQSMEIFWMHSCNISGGIPEEI-SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLN 189
+ + + I E L NL + LG + +P L L L+ L
Sbjct: 168 NRVPS-LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELE 224
Query: 190 LEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP-S 248
+ N P L++L +L + ++++S +F L +L L+L N ++S+P
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284
Query: 249 TLLNLKDILYLNLSSN 264
L+ ++ L+L N
Sbjct: 285 LFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 2e-29
Identities = 66/232 (28%), Positives = 97/232 (41%), Gaps = 11/232 (4%)
Query: 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEI-SNLTNLIAIYLGGNK 170
+Y + N++ I +L +E+ + +I I + L +L + L N
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHH-LEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNW 134
Query: 171 LNGSIPI-ALGKLQKLQLLNLEYNQLEGSIPDD-LCRLAALFQLDLGS-NKLSGFVPASF 227
L IP A L KL+ L L N +E SIP R+ +L +LDLG KL +F
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192
Query: 228 GNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSM 287
L NL+ L+LG I +P L L + L +S N F P L L K+ +
Sbjct: 193 EGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 288 NNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSI-GDLINLKSLDLSNNNL 338
+ S + L L L L +N L S+P + L L L L +N
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 6e-29
Identities = 62/243 (25%), Positives = 98/243 (40%), Gaps = 13/243 (5%)
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDD-LCRLAAL 209
+P+ I +N + L N + L L++L L N + I LA+L
Sbjct: 69 VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASL 125
Query: 210 FQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTG 268
L+L N L+ +F L+ LR L L +N I SIPS + ++ L+L
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185
Query: 269 PLPLEI-GNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLIN 327
+ L L ++L M N +P + L L+ L + N P S L +
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243
Query: 328 LKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNF--LAE-SFKGNE 384
LK L + N+ +S I + + L L ++N++ N L +P F L E N
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLP-HDLFTPLRYLVELHLHHNP 301
Query: 385 LLC 387
C
Sbjct: 302 WNC 304
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 28/143 (19%)
Query: 232 NLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFS 291
+ ++ +P + + YLNL N + + F
Sbjct: 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQ----------------MIQADTFR 96
Query: 292 GVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLD 351
L L+ L L N ++ + L +L +L+L +N L+ I + E L
Sbjct: 97 H--------LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148
Query: 352 LKDINVSFNKLEGEIPREGSFRN 374
L+++ + N +E IP +F
Sbjct: 149 LRELWLRNNPIE-SIP-SYAFNR 169
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 6e-29
Identities = 55/304 (18%), Positives = 99/304 (32%), Gaps = 48/304 (15%)
Query: 48 TIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLS 107
+IPS + + L+L N + NL L L N + + SSL
Sbjct: 45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS--FSSLG 100
Query: 108 NCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLG 167
+ L++ S N L + F L++L + L
Sbjct: 101 S---LEHLDLSYNYLSNLSSSW----------F---------------KPLSSLTFLNLL 132
Query: 168 GNKLNGSIP--IALGKLQKLQLLNLEYNQLEGSIPDD-LCRLAALFQLDLGSNKLSGFVP 224
GN ++ L KLQ+L + I L L +L++ ++ L + P
Sbjct: 133 GNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191
Query: 225 ASFGNLTNLRSLHLGSNQITSIPSTLL-NLKDILYLNLSSNFFTGPLPLEI--------G 275
S ++ N+ L L Q + + + L L E+
Sbjct: 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251
Query: 276 NLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSI-GDLINLKSLDLS 334
+ ++ + + + + L L N+L+ S+PD I L +L+ + L
Sbjct: 252 KKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLH 309
Query: 335 NNNL 338
N
Sbjct: 310 TNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 51/269 (18%), Positives = 98/269 (36%), Gaps = 20/269 (7%)
Query: 34 NLEELLLWGNNFSGTIPSFIF-NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNY 92
++ L L N + I + L L L N ++F +L +L L L+ NY
Sbjct: 53 AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 93 LTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIP 152
L++ + LS+ L + + N + ++ + ++I + + + I
Sbjct: 112 LSNLSSSW--FKPLSS---LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166
Query: 153 EEI-SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDL-CRLAALF 210
+ + LT L + + + L P +L +Q + L L Q + + +++
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVE 225
Query: 211 QLDLGSNKLSGF--------VPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLS 262
L+L L F S R++ + + + L + +L L S
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285
Query: 263 SNFFTGPLPLEI-GNLKVLIKIDLSMNNF 290
N +P I L L KI L N +
Sbjct: 286 RNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 4e-24
Identities = 49/257 (19%), Positives = 110/257 (42%), Gaps = 18/257 (7%)
Query: 132 NLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPI-ALGKLQKLQLLNL 190
L+++++ + + I+ ++ NL A+ L N +N +I + L L+ L+L
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDL 107
Query: 191 EYNQLEGSIPDDLCR-LAALFQLDLGSNKLSGFVPAS-FGNLTNLRSLHLGSN-QITSIP 247
YN L ++ + L++L L+L N S F +LT L+ L +G+ T I
Sbjct: 108 SYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166
Query: 248 S-TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQY 306
L + L + ++ P + +++ + + L M ++ I + ++
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226
Query: 307 LFLEYNRLQG----SIP----DSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVS 358
L L L + +S+ +++ +++ +L ++ + L ++ L ++ S
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLELEFS 285
Query: 359 FNKLEGEIPREGSFRNF 375
N+L+ +P G F
Sbjct: 286 RNQLKS-VPD-GIFDRL 300
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 5/194 (2%)
Query: 174 SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNL 233
SIP L + ++ L+L N++ DL R L L L SN ++ SF +L +L
Sbjct: 45 SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 234 RSLHLGSNQITSIPSTLL-NLKDILYLNLSSNFFTGPLPLEI-GNLKVLIKIDLSMNNFS 291
L L N ++++ S+ L + +LNL N + + +L L + + +
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162
Query: 292 GVIPI-TIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLL 350
I L L+ L ++ + LQ P S+ + N+ L L ++ I ++
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222
Query: 351 DLKDINVSFNKLEG 364
++ + + L+
Sbjct: 223 SVECLELRDTDLDT 236
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 4e-12
Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 24/188 (12%)
Query: 4 SFNKLVGVVPTTIF-NVSTLNSLYL-QNVQLQ-----------NLEELLLWGNNFSGTIP 50
N + T++F +++ L L + LEEL + ++ +
Sbjct: 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYE 190
Query: 51 SFIF-NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNC 109
+ +S L L M + ++ L L D L T + LS+
Sbjct: 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL--DTFHFSELSTGETN 248
Query: 110 KYLKYFSFSNNSLDGI----LPRAIGNLSQSMEIFWMHSCNISGGIPEEI-SNLTNLIAI 164
+K F+F N + + + + +S + + +P+ I LT+L I
Sbjct: 249 SLIKKFTFRNVKITDESLFQVMKLLNQISG-LLELEFSRNQLKS-VPDGIFDRLTSLQKI 306
Query: 165 YLGGNKLN 172
+L N +
Sbjct: 307 WLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 8e-10
Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 6/142 (4%)
Query: 235 SLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVI 294
S + SIPS L + + L+LS+N T ++ L + L+ N + +
Sbjct: 35 ICKGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92
Query: 295 PITIGYLKDLQYLFLEYNRLQGSIPDSI-GDLINLKSLDLSNNNLSGIIPISL-EKLLDL 352
+ L L++L L YN L ++ S L +L L+L N + SL L L
Sbjct: 93 EDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151
Query: 353 KDINVSFNKLEGEIPREGSFRN 374
+ + V +I F
Sbjct: 152 QILRVGNMDTFTKIQ-RKDFAG 172
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 1e-28
Identities = 66/384 (17%), Positives = 132/384 (34%), Gaps = 30/384 (7%)
Query: 4 SFNKLVGVVPTTIF-NVSTLNSLYLQNVQLQ--------NLEELLLWGNNFSGTIPSF-- 52
SFN + F N+S L L L L+ +L +
Sbjct: 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP 157
Query: 53 ----IFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDN-YLTSSTPKLNFLSSLS 107
FN L + F+ + + + NL + + L+ L+ L
Sbjct: 158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ 217
Query: 108 NCKYLKYFSFSNNSLDGILPRAIGNLSQ--SMEIFWMHSCNISGGIPEEI-----SNLTN 160
L + +N I L ++ F + + + G + ++L
Sbjct: 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277
Query: 161 LIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLS 220
L + + + + N + +++ LD +N L+
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337
Query: 221 GFVPASFGNLTNLRSLHLGSNQITSIPST---LLNLKDILYLNLSSNFFTGPLPLEI-GN 276
V + G+LT L +L L NQ+ + +K + L++S N +
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397
Query: 277 LKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNN 336
K L+ +++S N + I + ++ L L N+++ SIP + L L+ L++++N
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN 454
Query: 337 NLSGIIPISLEKLLDLKDINVSFN 360
L + ++L L+ I + N
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-24
Identities = 67/335 (20%), Positives = 118/335 (35%), Gaps = 19/335 (5%)
Query: 18 NVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTF 77
+ LQ+ ++L + F + + + L ++
Sbjct: 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210
Query: 78 GNLRNLNRLG----LNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNL 133
L L L N + ++ + L + YFS SN L G L +
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270
Query: 134 S-QSMEIFWMH--SCNISGGIPEEI-SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLN 189
S S++ +H ++ G I +N+ + + K+ L+
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330
Query: 190 LEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPAS--FGNLTNLRSLHLGSNQITSIP 247
N L ++ ++ L L L L N+L + + +L+ L + N ++
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390
Query: 248 STLL--NLKDILYLNLSSNFFT-GPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDL 304
K +L LN+SSN T +KVL DL N IP + L+ L
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL---DLHSNKIK-SIPKQVVKLEAL 446
Query: 305 QYLFLEYNRLQGSIPDSI-GDLINLKSLDLSNNNL 338
Q L + N+L+ S+PD I L +L+ + L N
Sbjct: 447 QELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 8e-23
Identities = 77/393 (19%), Positives = 137/393 (34%), Gaps = 32/393 (8%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQ-----------NLEELLLWGNNFSGTIPSF 52
S N + + + I ++S L L + + ++Q LE L L N I
Sbjct: 29 SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH 87
Query: 53 IFNASKLSRLELQMNSFYGF-IPNTFGNLRNLNRLGLNDNYLTSSTPK----LNFLSSLS 107
L L+L N+F I FGN+ L LGL+ +L S+ LN L
Sbjct: 88 PT--VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145
Query: 108 NCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPE-EISNLTNLIAIYL 166
L ++ + + + F + E+SN+ ++
Sbjct: 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205
Query: 167 GGNKLNG-SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSG---- 221
L+ + KL L L N+E L ++ + + KL G
Sbjct: 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265
Query: 222 -FVPASFGNLTNLRSLHLGSNQITSIPSTL-LNLKDILYLNLSSNFFTGPLPLEIGNLKV 279
S +L L + S+ S + ++ N + + L +
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP 325
Query: 280 LIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIG---DLINLKSLDLSNN 336
+ +D S N + + G+L +L+ L L+ N+L+ + + +L+ LD+S N
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQN 384
Query: 337 NLSGIIP-ISLEKLLDLKDINVSFNKLEGEIPR 368
++S L +N+S N L I R
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR 417
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 94.2 bits (234), Expect = 2e-20
Identities = 62/372 (16%), Positives = 129/372 (34%), Gaps = 36/372 (9%)
Query: 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYL 93
L + N S S I + SKL L + N + F + L L L+ N L
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Query: 94 TS----STPKL-------NFLSSLSNCKY------LKYFSFSNNSLDGILPRAIGNLSQS 136
T L N +L CK LK+ S L+ I +L+ S
Sbjct: 82 VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNIS 141
Query: 137 MEIFWMHSCNISGGIPEEISNL--TNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQ 194
+ + PE + + +L ++ + + + +++ + L+L N++
Sbjct: 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201
Query: 195 LEG------SIPDDLCRLAALFQLDLGSNKLSG---FVPASFGNLTNLRSLHLGSNQITS 245
+ SI L L L L + + + T + + + ++
Sbjct: 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG 261
Query: 246 IPS------TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIG 299
+ +LK + + S+ F P + + +++ V +
Sbjct: 262 QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321
Query: 300 YLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPIS--LEKLLDLKDINV 357
+ +L N L ++ ++ G L L++L L N L + I+ ++ L+ +++
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381
Query: 358 SFNKLEGEIPRE 369
S N + + +
Sbjct: 382 SQNSVSYDEKKG 393
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 1e-17
Identities = 42/193 (21%), Positives = 79/193 (40%), Gaps = 8/193 (4%)
Query: 185 LQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT 244
+LN+ N + D+ L+ L L + N++ + F L L L N++
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82
Query: 245 SIPS-TLLNLKDILYLNLSSNFFTG-PLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLK 302
I +NLK +L+LS N F P+ E GN+ L + LS + + I +L
Sbjct: 83 KISCHPTVNLK---HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139
Query: 303 DLQ-YLFLEYNRLQGSIPDSIGDL--INLKSLDLSNNNLSGIIPISLEKLLDLKDINVSF 359
+ L L + P+ + D +L + +N I+ +S++ + +L+ N+
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199
Query: 360 NKLEGEIPREGSF 372
+ + S
Sbjct: 200 VLEDNKCSYFLSI 212
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 1e-09
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 6/154 (3%)
Query: 235 SLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVI 294
+ N + +P L + LN+S N+ + +I +L L + +S N +
Sbjct: 4 LVDRSKNGLIHVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61
Query: 295 PITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGI-IPISLEKLLDLK 353
+ ++L+YL L +N+L I +NLK LDLS N + I + LK
Sbjct: 62 ISVFKFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118
Query: 354 DINVSFNKLEGEIPREGSFRNFLAESFKGNELLC 387
+ +S LE + N E
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 3 FSFNKLVGVVPTTIF-NVSTLNSLYLQNVQLQ---------NLEELLLWGNNFSGTIPSF 52
S N + +L SL + + L ++ L L N +IP
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQ 439
Query: 53 IFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLS 104
+ L L + N F L +L ++ L+ N S P++++LS
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 491
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 4e-28
Identities = 59/213 (27%), Positives = 84/213 (39%), Gaps = 6/213 (2%)
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210
+P I I+L GN+++ + + L +L L N L LA L
Sbjct: 26 VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83
Query: 211 QLDLGSNKLSGFVPAS-FGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTG 268
QLDL N V + F L L +LHL + + L + YL L N
Sbjct: 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143
Query: 269 PLPLEI-GNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLIN 327
LP + +L L + L N S V L L L L NR+ P + DL
Sbjct: 144 -LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Query: 328 LKSLDLSNNNLSGIIPISLEKLLDLKDINVSFN 360
L +L L NNLS + +L L L+ + ++ N
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-28
Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 16/222 (7%)
Query: 48 TIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLS 107
+P I + R+ L N +F RNL L L+ N L + L+
Sbjct: 25 AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA--AAFTGLA 80
Query: 108 NCKYLKYFSFSNNS-LDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEI-SNLTNLIAIY 165
L+ S+N+ L + P L + + + C + + + L L +Y
Sbjct: 81 L---LEQLDLSDNAQLRSVDPATFHGLGR-LHTLHLDRCGLQE-LGPGLFRGLAALQYLY 135
Query: 166 LGGNKLNGSIPI-ALGKLQKLQLLNLEYNQLEGSIPDD-LCRLAALFQLDLGSNKLSGFV 223
L N L ++P L L L L N++ S+P+ L +L +L L N+++
Sbjct: 136 LQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 224 PASFGNLTNLRSLHLGSNQITSIPSTLL-NLKDILYLNLSSN 264
P +F +L L +L+L +N ++++P+ L L+ + YL L+ N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 53/224 (23%), Positives = 83/224 (37%), Gaps = 8/224 (3%)
Query: 118 SNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPI 177
L + P + + + ++H IS NL ++L N L
Sbjct: 19 PQQGLQAV-PV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74
Query: 178 ALGKLQKLQLLNLEYNQLEGSIPDD-LCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSL 236
A L L+ L+L N S+ L L L L L P F L L+ L
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Query: 237 HLGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIP 295
+L N + ++P T +L ++ +L L N + L L ++ L N + V P
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 296 ITIGYLKDLQYLFLEYNRLQGSIPDSI-GDLINLKSLDLSNNNL 338
L L L+L N L ++P L L+ L L++N
Sbjct: 195 HAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-27
Identities = 57/285 (20%), Positives = 111/285 (38%), Gaps = 25/285 (8%)
Query: 79 NLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSME 138
L N ++ + +T + ++ + S + I + L+ +
Sbjct: 17 ALANAIKIAAGKSNVTD-------TVTQADLDGITTLSAFGTGVTTI--EGVQYLNN-LI 66
Query: 139 IFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGS 198
+ I+ + NLT + + L GN L ++ A+ LQ ++ L+L Q+
Sbjct: 67 GLELKDNQITD--LAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDV 122
Query: 199 IPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILY 258
P L L+ L L L N+++ P LTNL+ L +G+ Q++ + + L NL +
Sbjct: 123 TP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TPLANLSKLTT 177
Query: 259 LNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSI 318
L N + PL +L LI++ L N S V P+ +L + L +
Sbjct: 178 LKADDNKISDISPLA--SLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLTNQTITNQP 233
Query: 319 PDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLE 363
+L+ + + + I P ++ N+++N
Sbjct: 234 VFYNNNLVVP--NVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 4e-22
Identities = 55/277 (19%), Positives = 116/277 (41%), Gaps = 25/277 (9%)
Query: 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND 90
L + L +G T + + L LEL+ N P NL + L L+
Sbjct: 39 DLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG 94
Query: 91 NYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGG 150
N L + +S+++ + +K ++ + + P + LS +++ ++ I+
Sbjct: 95 NPLKN-------VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSN-LQVLYLDLNQITN- 143
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210
++ LTNL + +G +++ + L L KL L + N++ I L L L
Sbjct: 144 -ISPLAGLTNLQYLSIGNAQVS-DLT-PLANLSKLTTLKADDNKIS-DISP-LASLPNLI 198
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPL 270
++ L +N++S P N +NL + L + IT+ P + +++ N+ P+
Sbjct: 199 EVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP--VFYNNNLVVPNVVKGPSGAPI 254
Query: 271 -PLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQY 306
P I + +L+ N S + ++ + + + +
Sbjct: 255 APATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTF 291
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 16/268 (5%)
Query: 99 KLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNL 158
+ + S + S+ + L S++ ++ +I + I L
Sbjct: 13 PIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIK--SVQGIQYL 67
Query: 159 TNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNK 218
N+ ++L GNKL I L L+ L L L+ N+++ + L L L L L N
Sbjct: 68 PNVTKLFLNGNKLT-DIK-PLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNG 123
Query: 219 LSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLK 278
+S +L L SL+LG+N+IT I + L L + L+L N + +PL L
Sbjct: 124 ISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLA--GLT 178
Query: 279 VLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNL 338
L + LS N+ S + + LK+L L L + +L+ ++ ++ +L
Sbjct: 179 KLQNLYLSKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
Query: 339 SGIIPISLEKLLDLKDINVSFNKLEGEI 366
IS + + ++ + E+
Sbjct: 237 VTPEIISDDGDYEKPNVKWHLPEFTNEV 264
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 6e-16
Identities = 60/282 (21%), Positives = 109/282 (38%), Gaps = 55/282 (19%)
Query: 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND 90
+L ++++++ ++ ++ I +++L L N P NL+NL L L++
Sbjct: 44 ELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99
Query: 91 NYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGG 150
N + LSSL + K LK S +N + I
Sbjct: 100 NKVKD-------LSSLKDLKKLKSLSLEHNGISDI------------------------- 127
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210
+ +L L ++YLG NK+ + L +L KL L+LE NQ+ I L L L
Sbjct: 128 --NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQ 181
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPL 270
L L N +S L NL L L S + + P + + +++ N N +
Sbjct: 182 NLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP--INHQSNLVVPNTVKNTDGSLV 237
Query: 271 PLE-IGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEY 311
E I + K ++ + + ++ ++F +
Sbjct: 238 TPEIISDDGDYEKPNVKWHL--------PEFTNEVSFIFYQP 271
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 6e-08
Identities = 41/238 (17%), Positives = 71/238 (29%), Gaps = 42/238 (17%)
Query: 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND 90
L+NL L L N S + + KL L L+ N +L L L L +
Sbjct: 88 NLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGN 143
Query: 91 NYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGG 150
N +T ++ LS L S +N + I
Sbjct: 144 NKITD-------ITVLSRLTKLDTLSLEDNQISDI------------------------- 171
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210
++ LT L +YL N ++ + AL L+ L +L L + + L
Sbjct: 172 --VPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTG 268
+ L P + + ++ + + + + F G
Sbjct: 228 TVKNTDGSLV--TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 283
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 4e-25
Identities = 68/337 (20%), Positives = 123/337 (36%), Gaps = 27/337 (8%)
Query: 22 LNSLYLQNVQLQNLEEL---LLWGNNFSGTIPSFIFNAS-------KLSRLELQMNSFYG 71
L S +++ + ++L+ +L ++ S N S +LS ++L +
Sbjct: 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237
Query: 72 FIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIG 131
+ R L + ++ ++ L + ++Y + N ++ + R
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297
Query: 132 NLS----QSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQL 187
S +S+ I + + S + L + +
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357
Query: 188 LNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP 247
LN N S+ L L L L N L N+ SL + S+
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 248 STLLN-----LKDILYLNLSSNFFTGPLPLEI-GNLKVLIKIDLSMNNFSGVIPITIGYL 301
S + + IL LNLSSN TG + + +KVL DL N IP + +L
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL---DLHNNRIM-SIPKDVTHL 472
Query: 302 KDLQYLFLEYNRLQGSIPDSIGD-LINLKSLDLSNNN 337
+ LQ L + N+L+ S+PD + D L +L+ + L +N
Sbjct: 473 QALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 2e-19
Identities = 53/275 (19%), Positives = 95/275 (34%), Gaps = 46/275 (16%)
Query: 27 LQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSR-----LELQMNSFYGFIPNTFGNLR 81
Q + +E L ++ + I F S+ + ++ F +
Sbjct: 270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329
Query: 82 NLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFW 141
+N L+ + + S S+ + +F+ N + +
Sbjct: 330 EMNIKMLSISDTPF--IHMVCPPSPSS---FTFLNFTQNVFTDSVFQGC----------- 373
Query: 142 MHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIA---LGKLQKLQLLNLEYNQLEGS 198
S L L + L N L + + L+ L++ N L
Sbjct: 374 --------------STLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSH 418
Query: 199 IPDDLCRLAA-LFQLDLGSNKLSGFVPASFGNLT-NLRSLHLGSNQITSIPSTLLNLKDI 256
D C A + L+L SN L+G V F L ++ L L +N+I SIP + +L+ +
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNRIMSIPKDVTHLQAL 475
Query: 257 LYLNLSSNFFTGPLPLEI-GNLKVLIKIDLSMNNF 290
LN++SN +P + L L I L N +
Sbjct: 476 QELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 4e-18
Identities = 61/349 (17%), Positives = 119/349 (34%), Gaps = 26/349 (7%)
Query: 32 LQNLEELLLWGNNFSGTIPSFIFNA-SKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND 90
L L L L N ++ +F L L++ N I + +L L L+
Sbjct: 75 LSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLDLSF 130
Query: 91 NYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGG 150
N P +L+ L + S + + +L S + + S +I GG
Sbjct: 131 NDFDV-LPVCKEFGNLTK---LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186
Query: 151 IPEEISNL-TNLIAIYLGGNKLNGSI-PIALGKLQKLQLLNLEYNQLEG----SIPDDLC 204
E + T ++ + N L +++ L LQL N++ N + +L
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246
Query: 205 RLAALFQLDLGSNKLSGFVPA---SFGNLTNLRSLHLGSNQITSIPS------TLLNLKD 255
R L + L + + F + L++ + IT + LK
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306
Query: 256 ILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQ 315
++ ++ + F + LS+++ + + +L N
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366
Query: 316 GSIPDSIGDLINLKSLDLSNNNLSGIIPIS--LEKLLDLKDINVSFNKL 362
S+ L L++L L N L ++ + + L+ ++VS N L
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 5e-17
Identities = 44/232 (18%), Positives = 84/232 (36%), Gaps = 16/232 (6%)
Query: 15 TIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNA-SKLSRLELQMNSFYGFI 73
TI L++L + F +++ ++++ L ++
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIH 345
Query: 74 PNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNL 133
+ + L N T S + S+L L+ N L +
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQ-GC-STLKR---LQTLILQRNGLK-NFFKVALMT 399
Query: 134 SQSMEIFWMHSCNI----SGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLN 189
M ++ S + +++ + L N L GS+ L K+++L+
Sbjct: 400 KN-MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLD 456
Query: 190 LEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSN 241
L N++ SIP D+ L AL +L++ SN+L F LT+L+ + L N
Sbjct: 457 LHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 4e-08
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 32/141 (22%)
Query: 235 SLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVI 294
+ + +T +P L L+LS N + +L M + S
Sbjct: 35 MVDYSNRNLTHVPKDLPP--RTKALSLSQNSIS----------------ELRMPDISF-- 74
Query: 295 PITIGYLKDLQYLFLEYNRLQGSIPDSIGD-LINLKSLDLSNNNLSGIIPISLEKLLDLK 353
L +L+ L L +NR++ S+ + +L+ LD+S+N L IS + L+
Sbjct: 75 ------LSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLR 124
Query: 354 DINVSFNKLEGEIPREGSFRN 374
+++SFN + +P F N
Sbjct: 125 HLDLSFNDFD-VLPVCKEFGN 144
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 54/235 (22%), Positives = 84/235 (35%), Gaps = 40/235 (17%)
Query: 32 LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDN 91
+ + E+ N + +P + + L L N Y F T L +L L+
Sbjct: 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65
Query: 92 YLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGI 151
LT L L S+N L QS +
Sbjct: 66 ELTK-------LQVDGTLPVLGTLDLSHNQL------------QS--------------L 92
Query: 152 PEEISNLTNLIAIYLGGNKLNGSIPI-ALGKLQKLQLLNLEYNQLEGSIPDDLC-RLAAL 209
P L L + + N+L S+P+ AL L +LQ L L+ N+L+ ++P L L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKL 150
Query: 210 FQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSN 264
+L L +N L+ L NL +L L N + +IP + + L N
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 2e-23
Identities = 50/220 (22%), Positives = 84/220 (38%), Gaps = 33/220 (15%)
Query: 118 SNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPI 177
+L + P +L + I + + + T L + L +L +
Sbjct: 18 DKRNLTAL-PP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ- 71
Query: 178 ALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLH 237
G L L L+L +NQL+ S+P L AL LD+ N+L+ + L L+ L+
Sbjct: 72 VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 238 LGSNQITSIPSTLL-NLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPI 296
L N++ ++P LL + L+L++N T +L +G
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT----------------ELPAGLLNG---- 170
Query: 297 TIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNN 336
L++L L L+ N L +IP L L N
Sbjct: 171 ----LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 1e-22
Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 33/218 (15%)
Query: 156 SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLG 215
S + + + + L ++P L + +L+L N L L L QL+L
Sbjct: 7 SKVASHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 216 SNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIG 275
+L+ + G L L +L L NQ+ S+P L + L++S N T
Sbjct: 64 RAELTK-LQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-------- 113
Query: 276 NLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD-LINLKSLDLS 334
L + G L +LQ L+L+ N L+ ++P + L+ L L+
Sbjct: 114 --------SLPLGALRG--------LGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLA 156
Query: 335 NNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSF 372
NNNL+ + L L +L + + N L IP+ G F
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYT-IPK-GFF 192
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 4e-19
Identities = 46/193 (23%), Positives = 69/193 (35%), Gaps = 37/193 (19%)
Query: 185 LQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT 244
+N + L ++P DL L L N L F A+ T L L+L ++T
Sbjct: 12 HLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 245 SIP--STLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLK 302
+ TL L L+LS N +P+ L
Sbjct: 69 KLQVDGTLPVLG---TLDLSHNQLQ-------------------------SLPLLGQTLP 100
Query: 303 DLQYLFLEYNRLQGSIPDSIGD-LINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNK 361
L L + +NRL S+P L L+ L L N L + P L L+ ++++ N
Sbjct: 101 ALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159
Query: 362 LEGEIPREGSFRN 374
L E+P G
Sbjct: 160 LT-ELP-AGLLNG 170
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 43/215 (20%), Positives = 59/215 (27%), Gaps = 49/215 (22%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLE 63
S N L T+ + L L L +L + L L+
Sbjct: 39 SENLLYTFSLATLMPYTRLTQLNLDRAELT--------------KLQVD-GTLPVLGTLD 83
Query: 64 LQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLD 123
L N +P L L L ++ N LTS L L L+ N L
Sbjct: 84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGA--LRGLGE---LQELYLKGNELK 137
Query: 124 GILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPI-ALGKL 182
+ P + L + L N L +P L L
Sbjct: 138 TLPPGL----------L---------------TPTPKLEKLSLANNNLT-ELPAGLLNGL 171
Query: 183 QKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSN 217
+ L L L+ N L +IP L L N
Sbjct: 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 49/236 (20%), Positives = 82/236 (34%), Gaps = 33/236 (13%)
Query: 132 NLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPI-ALGKLQKLQLLNL 190
NL S + + + + L + L ++ +I A L L L L
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83
Query: 191 EYNQLEGSIPDDL-CRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP-- 247
N ++ S+ L++L +L L+ G+L L+ L++ N I S
Sbjct: 84 TGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 248 ---STLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDL 304
S L NL+ +L+LSSN + + + + + L
Sbjct: 143 EYFSNLTNLE---HLDLSSNKIQ----------------SIYCTDLRVLHQMPLLNLS-- 181
Query: 305 QYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFN 360
L L N + I I LK L L N L + ++L L+ I + N
Sbjct: 182 --LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 1e-19
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 11/197 (5%)
Query: 185 LQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT 244
+ L+L +N L L LDL ++ ++ +L++L +L L N I
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 245 SIPSTLL-NLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVI-PITIGYLK 302
S+ L + L IG+LK L +++++ N P L
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 303 DLQYLFLEYNRLQGSIPDSIGD-LINLK----SLDLSNNNLSGIIPISLEKLLDLKDINV 357
+L++L L N++Q SI + L + SLDLS N ++ I K + LK++ +
Sbjct: 150 NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELAL 207
Query: 358 SFNKLEGEIPREGSFRN 374
N+L+ +P G F
Sbjct: 208 DTNQLK-SVPD-GIFDR 222
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 52/236 (22%), Positives = 87/236 (36%), Gaps = 29/236 (12%)
Query: 12 VPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYG 71
+P + + +L L L++L +F +L L+L
Sbjct: 22 IPDNLP--FSTKNLDLSFNPLRHLGS-----YSFFSF--------PELQVLDLSRCEIQT 66
Query: 72 FIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIG 131
+ +L +L+ L L N + S S L+ +L + IG
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGA-----FSGLSSLQKLVAVETNLASLENFPIG 121
Query: 132 NLSQSMEIFWMHSCNISGGIPEEI-SNLTNLIAIYLGGNKLNGSIPIA----LGKLQKLQ 186
+L ++ + I E SNLTNL + L NK+ SI L ++ L
Sbjct: 122 HLKT-LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLN 179
Query: 187 L-LNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSN 241
L L+L N + I + L +L L +N+L F LT+L+ + L +N
Sbjct: 180 LSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-16
Identities = 52/228 (22%), Positives = 88/228 (38%), Gaps = 43/228 (18%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQ-----------NLEELLLWGNNFSGTIPSF 52
SFN L + + F+ L L L ++Q +L L+L GN ++
Sbjct: 36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALG 94
Query: 53 IFNA-SKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKY 111
F+ S L +L + G+L+ L L + N + S + S+L+N
Sbjct: 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTN--- 150
Query: 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIA-IYLGGNK 170
L++ S+N + I + L + L + L N
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVL----------------------HQMPLLNLSLDLSLNP 188
Query: 171 LNGSIPIALGKLQKLQLLNLEYNQLEGSIPDD-LCRLAALFQLDLGSN 217
+N I K +L+ L L+ NQL+ S+PD RL +L ++ L +N
Sbjct: 189 MN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-24
Identities = 55/288 (19%), Positives = 109/288 (37%), Gaps = 45/288 (15%)
Query: 79 NLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSME 138
+ L +T + + + +N+ + + I L +
Sbjct: 19 AFAETIKDNLKKKSVTD-------AVTQNELNSIDQIIANNSDIKSVQG--IQYLPN-VT 68
Query: 139 IFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGS 198
+++ ++ I + ++NL NL ++L NK+ + +L L+KL+ L+LE+N +
Sbjct: 69 KLFLNGNKLTD-I-KPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-D 123
Query: 199 IPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILY 258
I + L L L L LG+NK++ LT L +L L NQI+ I
Sbjct: 124 I-NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP---------- 170
Query: 259 LNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSI 318
+ L L + LS N+ S + + LK+L L L
Sbjct: 171 ---------------LAGLTKLQNLYLSKNHISDLRALA--GLKNLDVLELFSQECLNKP 213
Query: 319 PDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEI 366
+ +L+ ++ ++ +L IS + + ++ + E+
Sbjct: 214 INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 4e-13
Identities = 44/288 (15%), Positives = 92/288 (31%), Gaps = 31/288 (10%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQ---------LQNLEELLLWGNNFSGTIPSFIF 54
+ V +++++ + N L N+ +L L GN + P +
Sbjct: 29 KKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LT 84
Query: 55 NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKY 114
N L L L N +L+ L L L N ++ ++ L + L+
Sbjct: 85 NLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISD-------INGLVHLPQLES 135
Query: 115 FSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGS 174
NN + I + L+ ++ + IS ++ LT L +YL N ++
Sbjct: 136 LYLGNNKITDITV--LSRLT-KLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS-D 189
Query: 175 IPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLR 234
+ AL L+ L +L L + + L + L S + +
Sbjct: 190 LR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS--DDGDYE 246
Query: 235 SLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIK 282
++ + + + + F G + + + +
Sbjct: 247 KPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 62/294 (21%), Positives = 94/294 (31%), Gaps = 30/294 (10%)
Query: 20 STLNSLYLQNVQLQ----NLEELLLWGNNFSGTIPSF-IFNASKLSRLELQMNSFYGFIP 74
S N L +V+L +LE LL + + I + L RL ++ I
Sbjct: 26 SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRIL 85
Query: 75 NT---FGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGI---LPR 128
+ L L L + +T + P ++ + L + N S L
Sbjct: 86 FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD---LNILNLRNVSWATRDAWLAE 142
Query: 129 AIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSI-------PIALGK 181
L +++ + + E++ L + L N G P+
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202
Query: 182 LQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPA-SFGNLTNLRSLHLGS 240
LQ L L N G L LDL N L A S + L SL+L
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262
Query: 241 NQITSIPSTLL-NLKDILYLNLSSNFFTG-PLPLEIGNLKVLIKIDLSMNNFSG 292
+ +P L L L+LS N P P E+ + L L N F
Sbjct: 263 TGLKQVPKGLPAKLS---VLDLSYNRLDRNPSPDELPQVGNL---SLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 98.4 bits (245), Expect = 1e-22
Identities = 58/338 (17%), Positives = 98/338 (28%), Gaps = 60/338 (17%)
Query: 44 NFSGTIPSF--IFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLN 101
NFS P + FN + +EL +G R+L L + +
Sbjct: 16 NFSDPKPDWSSAFNCLGAADVEL------------YGGGRSLEYLLKRVDTEADLGQFTD 63
Query: 102 FLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNL 161
+ SLS LK + + + L ++ + + S L L
Sbjct: 64 IIKSLS----LKRLTVRAARIPSRI------LFGALRVLGI-------------SGLQEL 100
Query: 162 IAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDL------CRLAALFQLDLG 215
L ++ G+ P L + L L + + D L L +
Sbjct: 101 ---TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157
Query: 216 SNKLSGFVPASFGNLTNLRSLHLGSNQITS--------IPSTLLNLKDILYLNLSSNFFT 267
F L +L L N P L+ + N +
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217
Query: 268 GPLPLEIGNLKVLIKIDLSMNNFSGVIP-ITIGYLKDLQYLFLEYNRLQGSIPDSIGDLI 326
G L +DLS N+ + + L L L + L+ +P +
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA-- 274
Query: 327 NLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEG 364
L LDLS N L +L + ++++ N
Sbjct: 275 KLSVLDLSYNRLDRNPSPD--ELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 1e-20
Identities = 50/276 (18%), Positives = 75/276 (27%), Gaps = 19/276 (6%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRL 62
K V + SL L+ + ++ + + S L L
Sbjct: 46 EYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAAR-----IPSRILFGALRVLGISGLQEL 100
Query: 63 ELQMNSFYGFIPNTFGNL--RNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNN 120
L+ G P +LN L L + + L L LK S +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK-PGLKVLSIAQA 159
Query: 121 SLDGILPRAIGNLSQ------SMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGS 174
+ S IS P + L L G +G
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219
Query: 175 IPIALGKLQKLQLLNLEYNQLEGSIPDDLCR-LAALFQLDLGSNKLSGFVPASFGNLTNL 233
+LQ L+L +N L + C + L L+L L L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKL 276
Query: 234 RSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGP 269
L L N++ PS L + L+L N F
Sbjct: 277 SVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS 311
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 1e-22
Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 37/220 (16%)
Query: 48 TIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLS 107
IPS I + +L+LQ N F L L L LNDN L + + F L
Sbjct: 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI-F-KELK 85
Query: 108 NCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLG 167
N L+ ++N L Q+ + G+ +++ NL L L
Sbjct: 86 N---LETLWVTDNKL------------QA----------LPIGVFDQLVNLAEL---RLD 117
Query: 168 GNKLNGSIPI-ALGKLQKLQLLNLEYNQLEGSIPDDLC-RLAALFQLDLGSNKLSGFVPA 225
N+L S+P L KL L+L YN+L+ S+P + +L +L +L L +N+L
Sbjct: 118 RNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEG 175
Query: 226 SFGNLTNLRSLHLGSNQITSIPSTLL-NLKDILYLNLSSN 264
+F LT L++L L +NQ+ +P +L+ + L L N
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 1e-22
Identities = 61/217 (28%), Positives = 86/217 (39%), Gaps = 41/217 (18%)
Query: 150 GIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLC-RLAA 208
IP ++ L L NKL+ A +L KL+LL L N+L+ ++P + L
Sbjct: 34 NIP---ADTKKL---DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86
Query: 209 LFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPST----LLNLKDILYLNLSSN 264
L L + NKL F L NL L L NQ+ S+P L L YL+L N
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT---YLSLGYN 143
Query: 265 FFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD 324
L F L L+ L L N+L+ +P+ D
Sbjct: 144 ELQ----------------SLPKGVFDK--------LTSLKELRLYNNQLK-RVPEGAFD 178
Query: 325 -LINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFN 360
L LK+L L NN L + + + L LK + + N
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 9e-21
Identities = 54/192 (28%), Positives = 81/192 (42%), Gaps = 29/192 (15%)
Query: 185 LQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT 244
+ L+L+ N+L RL L L L NKL F L NL +L + N++
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 245 SIPSTLL-NLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKD 303
++P + L ++ L L N L F L
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLK----------------SLPPRVFDS--------LTK 134
Query: 304 LQYLFLEYNRLQGSIPDSIGD-LINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKL 362
L YL L YN LQ S+P + D L +LK L L NN L + + +KL +LK + + N+L
Sbjct: 135 LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 363 EGEIPREGSFRN 374
+ +P G+F +
Sbjct: 194 K-RVPE-GAFDS 203
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 4e-12
Identities = 55/241 (22%), Positives = 81/241 (33%), Gaps = 73/241 (30%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNA-SKLSRL 62
NKL + ++ L LYL + +LQ T+P+ IF L L
Sbjct: 45 QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ--------------TLPAGIFKELKNLETL 90
Query: 63 ELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSL 122
+ N F L NL L L+ N L S
Sbjct: 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS--------------------------- 123
Query: 123 DGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPI-ALGK 181
+ + + ++ LT L LG N+L S+P K
Sbjct: 124 ------------------------LPPRVFDSLTKLTYL---SLGYNELQ-SLPKGVFDK 155
Query: 182 LQKLQLLNLEYNQLEGSIPDDLC-RLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGS 240
L L+ L L NQL+ +P+ +L L L L +N+L +F +L L+ L L
Sbjct: 156 LTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214
Query: 241 N 241
N
Sbjct: 215 N 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 30/125 (24%), Positives = 44/125 (35%), Gaps = 19/125 (15%)
Query: 12 VPTTIF-NVSTLNSLYLQNVQLQ-----------NLEELLLWGNNFSGTIPSFIFNA-SK 58
+P +F + L L L QL+ L L L N ++P +F+ +
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTS 158
Query: 59 LSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFS 118
L L L N F L L L L++N L P+ F + + LK
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAF----DSLEKLKMLQLQ 213
Query: 119 NNSLD 123
N D
Sbjct: 214 ENPWD 218
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 98.4 bits (245), Expect = 2e-22
Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 7/216 (3%)
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDD-LCRLAAL 209
IP ++ N I + KL A L+ + + N + I D L L
Sbjct: 24 IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81
Query: 210 FQLDL-GSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFT 267
++ + +N L P +F NL NL+ L + + I +P ++ + L++ N
Sbjct: 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 141
Query: 268 GPLPLEI--GNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDL 325
+ G + + L+ N + + + + N L+ D
Sbjct: 142 HTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201
Query: 326 INLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNK 361
LD+S + + LE L L+ + K
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 9e-21
Identities = 49/231 (21%), Positives = 80/231 (34%), Gaps = 12/231 (5%)
Query: 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEI-SNLTNLIAIYL-GGN 169
F L I A +E + ++ I ++ SNL L I + N
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90
Query: 170 KLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDL-CRLAALFQLDLGSN-KLSGFVPASF 227
L P A L LQ L + ++ +PD LD+ N + SF
Sbjct: 91 NLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149
Query: 228 GNLT-NLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEI-GNLKVLIKIDL 285
L+ L L N I I ++ N + LNLS N LP ++ + +D+
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209
Query: 286 SMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNN 336
S + + LK L+ + +P ++ L+ L L+
Sbjct: 210 SRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 2e-20
Identities = 48/267 (17%), Positives = 88/267 (32%), Gaps = 46/267 (17%)
Query: 12 VPTTIFNVSTLNSLYLQN-----------VQLQNLEELLLWGNNFSGTIPSFIF-NASKL 59
+P+ + L +LE++ + N+ I + +F N KL
Sbjct: 24 IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81
Query: 60 SRLELQ-MNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFS 118
+ ++ N+ P F NL NL L +++ + P ++ + SL L
Sbjct: 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL-PDVHKIHSLQK-VLLDIQD-- 137
Query: 119 NNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIA 178
N ++ I + LS I W++ I I N T L
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQL----------------- 179
Query: 179 LGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHL 238
+L + N LE D + LD+ ++ NL LR+
Sbjct: 180 ------DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233
Query: 239 GSNQITSIPSTLLNLKDILYLNLSSNF 265
+ +P+ L L ++ +L+
Sbjct: 234 --YNLKKLPT-LEKLVALMEASLTYPS 257
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 7/146 (4%)
Query: 232 NLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFS 291
+ R +++T IPS L ++ + L L KI++S N+
Sbjct: 10 SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67
Query: 292 GVIPI-TIGYLKDLQYLFLE-YNRLQGSIPDSI-GDLINLKSLDLSNNNLSGIIPISLEK 348
VI L L + +E N L I +L NL+ L +SN + + +
Sbjct: 68 EVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126
Query: 349 LLDLKDINVSFNKLEGEIPREGSFRN 374
L +++ N I SF
Sbjct: 127 SLQKVLLDIQDNINIHTIE-RNSFVG 151
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 39/192 (20%), Positives = 64/192 (33%), Gaps = 29/192 (15%)
Query: 6 NKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIF-NASKLSRLEL 64
N L+ + P N+ L L + N ++ +P ++ + L++
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIK--------------HLPDVHKIHSLQKVLLDI 135
Query: 65 QMNSFYGFIP-NTFGNLR-NLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSL 122
Q N I N+F L L LN N + S+ + + + NN+L
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-----SAFNGTQLDELNLSDNNNL 190
Query: 123 DGILPRAIGNLSQSMEIFWMHSCNISGGIPEEI-SNLTNLIAIYLGGNKLNGSIPIALGK 181
+ + S I + I +P NL L A K +P L K
Sbjct: 191 EELPNDVFHGAS-GPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-TLEK 244
Query: 182 LQKLQLLNLEYN 193
L L +L Y
Sbjct: 245 LVALMEASLTYP 256
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 7e-22
Identities = 33/210 (15%), Positives = 65/210 (30%), Gaps = 33/210 (15%)
Query: 156 SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLG 215
S + LG + I ++ L + L +
Sbjct: 20 STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT------------------- 57
Query: 216 SNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIG 275
L+G N++ L + + T+ + + L ++ L + T +
Sbjct: 58 --DLTGI-----EYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLS 109
Query: 276 NLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSN 335
L L +D+S + I I L + + L YN I + L LKSL++
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQF 168
Query: 336 NNLSGIIPISLEKLLDLKDINVSFNKLEGE 365
+ + +E L + + G+
Sbjct: 169 DGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 7e-20
Identities = 28/215 (13%), Positives = 60/215 (27%), Gaps = 39/215 (18%)
Query: 79 NLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSME 138
+ L + + T + L Y + +N ++ +
Sbjct: 21 TFKAYLNGLLGQSSTANITE--------AQMNSLTYITLANINVTDL------------- 59
Query: 139 IFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGS 198
I N+ + + PI+ L L+ L + +
Sbjct: 60 --------------TGIEYAHNIKDLTINNIHATNYNPIS--GLSNLERLRIMGKDVTSD 103
Query: 199 IPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILY 258
+L L +L LD+ + + L + S+ L N + L L ++
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163
Query: 259 LNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGV 293
LN+ + +E + L ++ G
Sbjct: 164 LNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-19
Identities = 32/219 (14%), Positives = 66/219 (30%), Gaps = 37/219 (16%)
Query: 28 QNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLG 87
N+ + L S T + L+ + L + N+ L
Sbjct: 15 VNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLT 72
Query: 88 LNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNI 147
+N+ + T+ + +S L+ ++
Sbjct: 73 INNIHATN-------YNPISGLSNLERLRIMGK-------------------------DV 100
Query: 148 SGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLA 207
+ +S LT+L + + + + SI + L K+ ++L YN I L L
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLP 159
Query: 208 ALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSI 246
L L++ + + + + L L+ S I
Sbjct: 160 ELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-10
Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 9/128 (7%)
Query: 240 SNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIG 299
S +IP + K L L + + + L I L+ N + + I
Sbjct: 11 SQDNVNIPDS--TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTGI--E 63
Query: 300 YLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSF 359
Y +++ L + P I L NL+ L + +++ +L L L +++S
Sbjct: 64 YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121
Query: 360 NKLEGEIP 367
+ + I
Sbjct: 122 SAHDDSIL 129
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 22/161 (13%), Positives = 46/161 (28%), Gaps = 42/161 (26%)
Query: 22 LNSLYLQNVQ---------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGF 72
+ L + N+ L NLE L + G + + + + L+ L++ ++
Sbjct: 68 IKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127
Query: 73 IPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGN 132
I L +N + L+ N + + L LK + + +
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITD------IMPLKTLPELKSLNIQFDGVHDY------- 174
Query: 133 LSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNG 173
I + L +Y + G
Sbjct: 175 --------------------RGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 13/123 (10%), Positives = 35/123 (28%), Gaps = 21/123 (17%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRL 62
+ + +++L L + + + +I + I K++ +
Sbjct: 95 IMGKDVTSDKIPNLSGLTSLTLLDISH-------------SAHDDSILTKINTLPKVNSI 141
Query: 63 ELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSL 122
+L N I L L L + + + + + L + ++
Sbjct: 142 DLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD-------YRGIEDFPKLNQLYAFSQTI 193
Query: 123 DGI 125
G
Sbjct: 194 GGK 196
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 6e-21
Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 23/155 (14%)
Query: 479 HIRHRNLIKIISSCSN----DDFKA---DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYG 531
I HR+ +K +N ++F+A DFG+AK L+ + + T TIG++APEY
Sbjct: 154 KIIHRD-VK----AANILLDEEFEAVVGDFGLAK-LMDYKDTHVTTAVRGTIGHIAPEYL 207
Query: 532 REGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGE---MTLKHWVNDLLPI-SVMKVVDA 587
G+ S DV+ +G+ML+E T ++ D + L WV LL + +VD
Sbjct: 208 STGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDV 267
Query: 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEER 622
L V + + +A+ CT SP ER
Sbjct: 268 DLQGNYKDEEVEQ------LIQVALLCTQSSPMER 296
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 414 IRRLTYLELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKN-FDI 472
++R + EL A++ FS N++ RGG G VYK R+ G VAVK + + + F
Sbjct: 17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQT 76
Query: 473 ECDMMKHIRHRNLIKIISSCSNDD 496
E +M+ HRNL+++ C
Sbjct: 77 EVEMISMAVHRNLLRLRGFCMTPT 100
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 6e-21
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 13/179 (7%)
Query: 118 SNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEI-SNLTNLIAIYLGGNKLNGSIP 176
S L + P+ +L + + N+S E + LTNL ++ L N LN I
Sbjct: 26 SKQQLPNV-PQ---SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FIS 80
Query: 177 I-ALGKLQKLQLLNLEYNQLEGSIPDD-LCRLAALFQLDLGSNKLSGFVPASFGNLTNLR 234
A + L+ L+L N L ++ + L AL L L +N + +F ++ L+
Sbjct: 81 SEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139
Query: 235 SLHLGSNQITSIP----STLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNN 289
L+L NQI+ P L ++ L+LSSN ++ L +K L ++N
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 3e-19
Identities = 42/195 (21%), Positives = 60/195 (30%), Gaps = 35/195 (17%)
Query: 150 GIPEEISNLTNLIAIYLGGNKLNGSIP--IALGKLQKLQLLNLEYNQLEGSIPDD-LCRL 206
+P + L L N L + +L L L L +N L I + +
Sbjct: 36 SLPSYTALL------DLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPV 87
Query: 207 AALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNF 265
L LDL SN L F +L L L L +N I + ++ + L LS N
Sbjct: 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147
Query: 266 FTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDL 325
+ + L L L L N+L+ + L
Sbjct: 148 IS----------------RFPVELIKDG-----NKLPKLMLLDLSSNKLKKLPLTDLQKL 186
Query: 326 INLK--SLDLSNNNL 338
L L NN L
Sbjct: 187 PAWVKNGLYLHNNPL 201
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 37/180 (20%), Positives = 62/180 (34%), Gaps = 54/180 (30%)
Query: 198 SIPDDLCRLAALFQLDLGSNKLSGFVP-ASFGNLTNLRSLHLGSNQITSIPSTLLNLKDI 256
++P L + LDL N LS + LTNL SL L N + I S
Sbjct: 32 NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-------- 81
Query: 257 LYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQG 316
F + +L+YL L N L
Sbjct: 82 -------------------------------EAFVP--------VPNLRYLDLSSNHLH- 101
Query: 317 SIPDSI-GDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNF 375
++ + + DL L+ L L NN++ + + E + L+ + +S N++ P ++
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFP-VELIKDG 159
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 23/165 (13%)
Query: 3 FSFNKLVGVVPTTIF-NVSTLNSLYLQNVQLQ-----------NLEELLLWGNNFSGTIP 50
S N L + ++ L+SL L + L NL L L N+ T+
Sbjct: 46 LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLD 104
Query: 51 SFIF-NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNC 109
F+F + L L L N N F ++ L +L L+ N ++ +L + +
Sbjct: 105 EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL--IKDGNKL 162
Query: 110 KYLKYFSFSNNSLDGILPRAIGNLSQSMEIF-------WMHSCNI 147
L S+N L + + L ++ C +
Sbjct: 163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 3e-20
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 20/150 (13%)
Query: 482 HRNLIKIISSCSN----DDFKA---DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREG 534
HR+ +K N ++F DFG++K + DQ+ + T T+GY+ PEY +G
Sbjct: 162 HRD-VK----SINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKG 216
Query: 535 RVSTNGDVYSFGIMLIETFTRKKPTDEIFS-GEMTLKHWVNDLLPIS-VMKVVDAHLLSQ 592
R++ DVYSFG++L E + + + L W + + ++VD +L +
Sbjct: 217 RLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADK 276
Query: 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEER 622
+ K + A+KC S E+R
Sbjct: 277 IRPESLRK------FGDTAVKCLALSSEDR 300
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 3e-17
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 415 RRLTYLELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIEC 474
R+ ++L +ATN F LI G G VYK + G +VA+K + + + F+ E
Sbjct: 27 YRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEI 86
Query: 475 DMMKHIRHRNLIKIISSCSNDD 496
+ + RH +L+ +I C +
Sbjct: 87 ETLSFCRHPHLVSLIGFCDERN 108
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 4e-20
Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 16/211 (7%)
Query: 153 EEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQL 212
L N + LG + + +L +Q N + + ++ S+ + L +L
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKEL 68
Query: 213 DLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSI-PSTLLNLKDILYLNLSSNFFTGPLP 271
L N++S P +LT L L + N++ ++ L L L +N
Sbjct: 69 HLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLS---RLFLDNNELRDTDS 123
Query: 272 LEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSL 331
L +LK L + + N ++ + G+L L+ L L N + + + L + +
Sbjct: 124 LI--HLKNLEILSIRNNKLKSIVML--GFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWI 177
Query: 332 DLSNNNLSGIIPISLEKLLDLKDINVSFNKL 362
DL+ +L + +
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 9e-19
Identities = 50/270 (18%), Positives = 93/270 (34%), Gaps = 48/270 (17%)
Query: 79 NLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSME 138
L N + L +T L S ++ F+ N+++ +
Sbjct: 17 GLANAVKQNLGKQSVTD-------LVSQKELSGVQNFNGDNSNIQSL------------- 56
Query: 139 IFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGS 198
+ TNL ++L N+++ + L L KL+ L++ N+L+
Sbjct: 57 --------------AGMQFFTNLKELHLSHNQIS-DLS-PLKDLTKLEELSVNRNRLKNL 100
Query: 199 IPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILY 258
L+ +L L +N+L +L NL L + +N++ SI L L +
Sbjct: 101 NGIPSACLS---RLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIVM-LGFLSKLEV 154
Query: 259 LNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSI 318
L+L N T L LK + IDL+ + + Y +L + I
Sbjct: 155 LDLHGNEITNTGGLT--RLKKVNWIDLTGQK---CVNEPVKYQPELYITNTVKDPDGRWI 209
Query: 319 -PDSIGDLINLKSLDLSNNNLSGIIPISLE 347
P I + + + +S +
Sbjct: 210 SPYYISNGGSYVDGCVLWELPVYTDEVSYK 239
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 7e-10
Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 10/126 (7%)
Query: 238 LGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPIT 297
I + L + + NL T + + L + + +N + +
Sbjct: 4 QRPTPINQV-FPDPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAGM- 59
Query: 298 IGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINV 357
+ +L+ L L +N++ S + DL L+ L ++ N L + I L + +
Sbjct: 60 -QFFTNLKELHLSHNQI--SDLSPLKDLTKLEELSVNRNRLKNLNGIP---SACLSRLFL 113
Query: 358 SFNKLE 363
N+L
Sbjct: 114 DNNELR 119
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 7e-07
Identities = 43/275 (15%), Positives = 78/275 (28%), Gaps = 54/275 (19%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQN---------VQLQNLEELLLWGNNFSGTIPSFI 53
+ +V +S + + N NL+EL L N S + S +
Sbjct: 26 LGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DL-SPL 81
Query: 54 FNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLK 113
+ +KL L + N L L L++N L SL + K L+
Sbjct: 82 KDLTKLEELSVNRNRLKNLNGIPSACLSRLF---LDNNELRD-------TDSLIHLKNLE 131
Query: 114 YFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNG 173
S NN L I + L+ L + L GN++
Sbjct: 132 ILSIRNNKLKSI---------------------------VMLGFLSKLEVLDLHGNEIT- 163
Query: 174 SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNL 233
+ L +L+K+ ++L + L + + P N +
Sbjct: 164 NTG-GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNGGSY 220
Query: 234 RSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTG 268
+ + + + + F G
Sbjct: 221 VDGCVLWELPVYTDEVSYKFSEYINVGETEAIFDG 255
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 23/154 (14%)
Query: 478 KHIRHRNLIKIISSCSN----DDFKA---DFGMAKPLLKEDQSLIQTQTLATIGYMAPEY 530
H HR+ IK +N + F A DFG+A+ K Q+++ ++ + T YMAPE
Sbjct: 152 NHHIHRD-IK----SANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEA 206
Query: 531 GREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL--PISVMKVVDAH 588
R G ++ D+YSFG++L+E T DE L ++ ++ +D
Sbjct: 207 LR-GEITPKSDIYSFGVVLLEIITGLPAVDEH-REPQLLLDIKEEIEDEEKTIEDYIDK- 263
Query: 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEER 622
++ D V ++++A +C E +R
Sbjct: 264 KMNDADSTSVEA------MYSVASQCLHEKKNKR 291
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 7e-11
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 413 GIRRLTYLELFQATNGFSE------NNLIDRGGIGYVYKRRIHYGMEVAVK----VFDLQ 462
++ EL TN F E N + GG G VYK ++ VAVK + D+
Sbjct: 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVN-NTTVAVKKLAAMVDIT 69
Query: 463 YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD 496
E + FD E +M +H NL++++ S+ D
Sbjct: 70 TEELKQQFDQEIKVMAKCQHENLVELLGFSSDGD 103
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 9e-18
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 156 SNLTNLIAIYLGGNKLNGSIPI-ALGKLQKLQLLNLEYNQLEGSIPDDLC-RLAALFQLD 213
L L I NK+ I A + + L N+LE ++ + L +L L
Sbjct: 54 KKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLM 111
Query: 214 LGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP-STLLNLKDILYLNLSSN 264
L SN+++ SF L+++R L L NQIT++ L + LNL +N
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-13
Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 28/152 (18%)
Query: 212 LDLGSNKLSGFVP-ASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTGP 269
L L +N+ + F L LR ++ +N+IT I + + L+SN
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN- 95
Query: 270 LPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD-LINL 328
+ ++ F G L+ L+ L L NR+ + + L ++
Sbjct: 96 VQHKM---------------FKG--------LESLKTLMLRSNRIT-CVGNDSFIGLSSV 131
Query: 329 KSLDLSNNNLSGIIPISLEKLLDLKDINVSFN 360
+ L L +N ++ + P + + L L +N+ N
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 26/151 (17%)
Query: 4 SFNKLVGVVPTTIF-NVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRL 62
+ N+ + T IF + L + N ++ ++EE F G AS ++ +
Sbjct: 40 NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE-----GAFEG--------ASGVNEI 86
Query: 63 ELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSL 122
L N F L +L L L N +T +F LS+ ++ S +N +
Sbjct: 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSF-IGLSS---VRLLSLYDNQI 141
Query: 123 DGILPRAIGNLSQSMEIFWMH------SCNI 147
+ P A L S+ + +C +
Sbjct: 142 TTVAPGAFDTLH-SLSTLNLLANPFNCNCYL 171
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-06
Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 282 KIDLSMNNFSGVIPITI-GYLKDLQYLFLEYNRLQGSIPDSIGD-LINLKSLDLSNNNLS 339
++ L+ N F+ + I L L+ + N++ I + + + + L++N L
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE 94
Query: 340 GIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374
+ + L LK + + N++ + SF
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRIT-CVG-NDSFIG 127
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 303 DLQYLFLEYNRLQGSIPDSI-GDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNK 361
L L N I L L+ ++ SNN ++ I + E + +I ++ N+
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 362 LEGEIPREGSFRN 374
LE + F+
Sbjct: 93 LE-NVQ-HKMFKG 103
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 2e-17
Identities = 34/210 (16%), Positives = 76/210 (36%), Gaps = 11/210 (5%)
Query: 156 SNLTNLIAIYLGGNKLNGSIPI-ALGKLQKLQLLNLEYNQLEGSIPDDL-CRLAALFQLD 213
S + + L L +IP A L + + + + + L+ + ++
Sbjct: 28 SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86
Query: 214 LGSNK-LSGFVPASFGNLTNLRSLHLGSNQITSIP--STLLNLKDILYLNLSSNFFTGPL 270
+ + + L+ P + L L+ L + + + P + + + L ++ N + +
Sbjct: 87 IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146
Query: 271 PLEI--GNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSI--GDLI 326
P+ G + + L N F+ + L ++L N+ I G
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205
Query: 327 NLKSLDLSNNNLSGIIPISLEKLLDLKDIN 356
LD+S +++ + LE L +L N
Sbjct: 206 GPSLLDVSQTSVTALPSKGLEHLKELIARN 235
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 1e-16
Identities = 49/263 (18%), Positives = 81/263 (30%), Gaps = 62/263 (23%)
Query: 80 LRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEI 139
+ L L + +L + I A NL I
Sbjct: 30 PPSTQTLKLIETHLRT-----------------------------IPSHAFSNLPNISRI 60
Query: 140 FWMHSCNISGGIPEEI-SNLTNLIAIYLGGNKLNGSIPI-ALGKLQKLQLLNLEYNQLEG 197
+ + + NL+ + I + + I AL +L L+ L + L+
Sbjct: 61 YVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK- 118
Query: 198 SIPDD--LCRLAALFQLDLGSNKLSGFVPA-SFGNLTN-LRSLHLGSNQITSIPSTLLNL 253
PD + F L++ N +P +F L N +L L +N TS+ N
Sbjct: 119 MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178
Query: 254 KDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNR 313
+ + L+ N K L ID + F GV L +
Sbjct: 179 TKLDAVYLNKN-------------KYLTVID--KDAFGGV-------YSGPSLLDVSQTS 216
Query: 314 LQGSIPDSIGDLINLKSLDLSNN 336
+ ++P L +LK L N
Sbjct: 217 VT-ALPSKG--LEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-15
Identities = 36/211 (17%), Positives = 67/211 (31%), Gaps = 12/211 (5%)
Query: 34 NLEELLLWGNNFSGTIPSFIF-NASKLSRLELQMNSFYGFIP-NTFGNLRNLNRLGLNDN 91
+ + L L + TIPS F N +SR+ + ++ + ++F NL + + + +
Sbjct: 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 92 YLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGI 151
+ L LK+ N L + I + I
Sbjct: 91 RNLTYIDPDAL-KELPL---LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146
Query: 152 PEEI-SNLTN-LIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCR--LA 207
P L N + + L N S+ KL + L N+ I D +
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205
Query: 208 ALFQLDLGSNKLSGFVPASFGNLTNLRSLHL 238
LD+ ++ +L L + +
Sbjct: 206 GPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 6e-05
Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 21/161 (13%)
Query: 6 NKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQ 65
L + P + + L L + N L+ +L + +++ LE+
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDL------------TKVYSTDIFFILEIT 138
Query: 66 MNSFYGFIP-NTFGNLRNLNR-LGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLD 123
N + IP N F L N L L +N TS + + K + N L
Sbjct: 139 DNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-----YAFNGTKLDAVYLNKNKYLT 193
Query: 124 GILPRAIGNLSQSMEIFWMHSCNISGGIPEEI-SNLTNLIA 163
I A G + + + +++ +P + +L LIA
Sbjct: 194 VIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIA 233
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-16
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 150 GIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLC-RLAA 208
GIP +++ L YL GN+ +P L + L L++L N++ ++ + +
Sbjct: 28 GIPRDVTEL------YLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQ 79
Query: 209 LFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP-STLLNLKDILYLNLSSN 264
L L L N+L P +F L +LR L L N I+ +P +L + +L + +N
Sbjct: 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 282 KIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD-LINLKSLDLSNNNLSG 340
++ L N F+ ++P + K L + L NR+ ++ + + L +L LS N L
Sbjct: 35 ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 341 IIPISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374
I P + + L L+ +++ N + +P G+F +
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDIS-VVPE-GAFND 124
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 30/135 (22%), Positives = 48/135 (35%), Gaps = 33/135 (24%)
Query: 36 EELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTS 95
EL L GN F+ +P + N L+ ++L N +F N+ L L L+ N L
Sbjct: 34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR- 91
Query: 96 STPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEI 155
P F L + L+ S N + +PE
Sbjct: 92 CIPPRTF-DGLKS---LRLLSLHGNDI------------SV--------------VPEGA 121
Query: 156 -SNLTNLIAIYLGGN 169
++L+ L + +G N
Sbjct: 122 FNDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 303 DLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKL 362
D+ L+L+ N+ +P + + +L +DLSNN +S + S + L + +S+N+L
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 363 EGEIPREGSF 372
IP +F
Sbjct: 91 R-CIP-PRTF 98
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 2e-16
Identities = 57/208 (27%), Positives = 80/208 (38%), Gaps = 57/208 (27%)
Query: 150 GIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDL-CRLAA 208
GIP + L L L L KL LNL+YNQL+ ++ + L
Sbjct: 32 GIPADTEKL------DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84
Query: 209 LFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTG 268
L L L +N+L+ F +LT L L+LG NQ+ S+PS + F
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV---------------FDR 129
Query: 269 PLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD-LIN 327
L L+ L L N+LQ SIP D L N
Sbjct: 130 --------------------------------LTKLKELRLNTNQLQ-SIPAGAFDKLTN 156
Query: 328 LKSLDLSNNNLSGIIPISLEKLLDLKDI 355
L++L LS N L + + ++L L+ I
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTI 184
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 9e-13
Identities = 54/211 (25%), Positives = 77/211 (36%), Gaps = 62/211 (29%)
Query: 36 EELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTS 95
E+L L + + +KL+ L L N F +L L LGL +N L S
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 96 STPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEI 155
LP G+ + +
Sbjct: 98 ------------------------------LPL---------------------GVFDHL 106
Query: 156 SNLTNLIAIYLGGNKLNGSIPI-ALGKLQKLQLLNLEYNQLEGSIPD---DLCRLAALFQ 211
+ L L YLGGN+L S+P +L KL+ L L NQL+ SIP D +L L
Sbjct: 107 TQLDKL---YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFD--KLTNLQT 159
Query: 212 LDLGSNKLSGFVPASFGNLTNLRSLHLGSNQ 242
L L +N+L +F L L+++ L NQ
Sbjct: 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 3e-10
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 51/165 (30%)
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPL 270
+LDL S L+ A+F LT L L+L NQ+ ++ + F
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA---------------GVFDD-- 81
Query: 271 PLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD-LINLK 329
L +L L L N+L S+P + D L L
Sbjct: 82 ------------------------------LTELGTLGLANNQLA-SLPLGVFDHLTQLD 110
Query: 330 SLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374
L L N L + ++L LK++ ++ N+L+ IP G+F
Sbjct: 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIP-AGAFDK 153
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 4e-16
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 156 SNLTNLIAIYLGGNKLNGSIPI-ALGKLQKLQLLNLEYNQLEGSIPDDL-CRLAALFQLD 213
S L I L N+++ + A L+ L L L N++ +P L L +L L
Sbjct: 53 SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110
Query: 214 LGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP-STLLNLKDILYLNLSSN 264
L +NK++ +F +L NL L L N++ +I T L+ I ++L+ N
Sbjct: 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 1e-15
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 25/152 (16%)
Query: 186 QLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITS 245
+ LE N ++ P L ++DL +N++S P +F L +L SL L N+IT
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 246 IPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQ 305
+P +L L L + L+ N + + L +L
Sbjct: 95 LPKSLFE-----------------------GLFSLQLLLLNANKINCLRVDAFQDLHNLN 131
Query: 306 YLFLEYNRLQGSIPDSIGD-LINLKSLDLSNN 336
L L N+LQ +I L ++++ L+ N
Sbjct: 132 LLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 1e-15
Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 27/151 (17%)
Query: 212 LDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPL 270
+ L N + P +F LR + L +NQI+ + L+ + L L N
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN------ 90
Query: 271 PLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD-LINLK 329
+ +L + F G L LQ L L N++ + L NL
Sbjct: 91 -----KIT-----ELPKSLFEG--------LFSLQLLLLNANKIN-CLRVDAFQDLHNLN 131
Query: 330 SLDLSNNNLSGIIPISLEKLLDLKDINVSFN 360
L L +N L I + L ++ ++++ N
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 4e-11
Identities = 34/195 (17%), Positives = 56/195 (28%), Gaps = 58/195 (29%)
Query: 48 TIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLS 107
IP+ + + L+ N+ P F + L R+ L++N ++ P L
Sbjct: 25 EIPTNLPETIT--EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA--FQGLR 80
Query: 108 NCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLG 167
+ L N + +
Sbjct: 81 S---LNSLVLYGNKITELPKS--------------------------------------- 98
Query: 168 GNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDL-CRLAALFQLDLGSNKLSGFVPAS 226
L LQLL L N++ + D L L L L NKL +
Sbjct: 99 ----------LFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147
Query: 227 FGNLTNLRSLHLGSN 241
F L ++++HL N
Sbjct: 148 FSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 13/104 (12%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQ-----------NLEELLLWGNNFSGTIPSF 52
N + + P L + L N Q+ +L L+L+GN + +P
Sbjct: 40 EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKS 98
Query: 53 IF-NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTS 95
+F L L L N + F +L NLN L L DN L +
Sbjct: 99 LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 4e-08
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 282 KIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD-LINLKSLDLSNNNLSG 340
+I L N + P K L+ + L N++ + L +L SL L N ++
Sbjct: 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 341 IIPISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374
+ E L L+ + ++ NK+ + +F++
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKIN-CLRV-DAFQD 126
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 4e-16
Identities = 60/226 (26%), Positives = 90/226 (39%), Gaps = 37/226 (16%)
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210
P++ I L + +L + + + ++ L +
Sbjct: 13 FPDDAF--AETIKANLKKKSVT-DAV-TQNELNSIDQIIANNSDIKSVQGIQ--YLPNVR 66
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLN-LKDILYLNLSSNFFTGP 269
L LG NKL + A LTNL L L NQ+ S+P+ + + L ++ L L N
Sbjct: 67 YLALGGNKLHD-ISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS- 123
Query: 270 LPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD-LINL 328
LP GV L +L YL L +N+LQ S+P + D L NL
Sbjct: 124 LP-------------------DGVF----DKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNL 159
Query: 329 KSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374
LDLS N L + +KL LKD+ + N+L+ +P G F
Sbjct: 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPD-GVFDR 203
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 57/223 (25%), Positives = 85/223 (38%), Gaps = 49/223 (21%)
Query: 48 TIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLS 107
P F + + L+ S + L +++++ N++ + S + L
Sbjct: 12 IFPDDAFAETI--KANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG----IQYLP 63
Query: 108 NCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLG 167
N +YL + N L + LTNL + L
Sbjct: 64 NVRYL---ALGGNKL------------HDISAL---------------KELTNLTYLILT 93
Query: 168 GNKLNGSIPI-ALGKLQKLQLLNLEYNQLEGSIPDDLC-RLAALFQLDLGSNKLSGFVPA 225
GN+L S+P KL L+ L L NQL+ S+PD + +L L L+L N+L
Sbjct: 94 GNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151
Query: 226 SFGNLTNLRSLHLGSNQITSIPS----TLLNLKDILYLNLSSN 264
F LTNL L L NQ+ S+P L LK L L N
Sbjct: 152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK---DLRLYQN 191
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 57/232 (24%), Positives = 93/232 (40%), Gaps = 41/232 (17%)
Query: 36 EELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTS 95
+ L + + + + + ++ + L N+ L L N L
Sbjct: 22 IKANLKKKSVT-DAVTQN-ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD 77
Query: 96 STPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEI 155
++ L L+N L Y + N L QS + G+ +++
Sbjct: 78 ----ISALKELTN---LTYLILTGNQL------------QS----------LPNGVFDKL 108
Query: 156 SNLTNLIAIYLGGNKLNGSIPIAL-GKLQKLQLLNLEYNQLEGSIPDDLC-RLAALFQLD 213
+NL L L N+L S+P + KL L LNL +NQL+ S+P + +L L +LD
Sbjct: 109 TNLKEL---VLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELD 163
Query: 214 LGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLL-NLKDILYLNLSSN 264
L N+L F LT L+ L L NQ+ S+P + L + Y+ L N
Sbjct: 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 17/106 (16%)
Query: 4 SFNKLVGVVPTTIFN-VSTLNSLYLQNVQLQ-----------NLEELLLWGNNFSGTIPS 51
+ N+L + P +F+ ++ L L L QLQ NL L L N ++P
Sbjct: 93 TGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPK 150
Query: 52 FIFNA-SKLSRLELQMNSFYGFIPN-TFGNLRNLNRLGLNDNYLTS 95
+F+ + L+ L+L N +P F L L L L N L S
Sbjct: 151 GVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKS 195
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 79.4 bits (195), Expect = 9e-16
Identities = 40/251 (15%), Positives = 72/251 (28%), Gaps = 19/251 (7%)
Query: 89 NDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLS--QSMEIFWMHSCN 146
+ + + + L S +L + + Q +E
Sbjct: 328 QKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLL 386
Query: 147 ISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRL 206
+ + L + L P+ L L+ L N +
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL------KMEY 440
Query: 207 AALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFF 266
A + L L L+ V L + L L N++ ++P L L+ + L S N
Sbjct: 441 ADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
Query: 267 TGPLPLEIGNLKVLIKIDLSMNNFSGVIPI-TIGYLKDLQYLFLEYNRLQGSIPDSIGDL 325
+ + NL L ++ L N I + L L L+ N L L
Sbjct: 499 EN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERL 555
Query: 326 I----NLKSLD 332
++ S+
Sbjct: 556 AEMLPSVSSIL 566
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 4e-13
Identities = 31/226 (13%), Positives = 75/226 (33%), Gaps = 23/226 (10%)
Query: 169 NKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFG 228
++L L + + +L L +L+ + +
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR 393
Query: 229 NLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMN 288
L L +++ ++ YL+ + F + + + L+
Sbjct: 394 ALDPLLYEKETLQYFSTL--KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK 451
Query: 289 NFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEK 348
+ + + + L + +L L +NRL+ ++P ++ L L+ L S+N L + +
Sbjct: 452 DLTVLCHL--EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG--VAN 506
Query: 349 LLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQV 394
L L+++ + N+L + + L P L +
Sbjct: 507 LPRLQELLLCNNRL---------------QQSAAIQPLVSCPRLVL 537
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 2e-06
Identities = 34/173 (19%), Positives = 58/173 (33%), Gaps = 39/173 (22%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQL-----QNLEELLLWGNNFSGTIPSFIFNASK 58
F+ L V P + L S +L + ++ L L + T+ +
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLL 464
Query: 59 LSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFS 118
++ L+L N +P LR L L +DN L + + ++N L+
Sbjct: 465 VTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-------VDGVANLPRLQELLLC 516
Query: 119 NNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKL 171
NN L QS I + + + L+ + L GN L
Sbjct: 517 NN-----------RLQQSAAI-------------QPLVSCPRLVLLNLQGNSL 545
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 2e-15
Identities = 73/386 (18%), Positives = 127/386 (32%), Gaps = 76/386 (19%)
Query: 21 TLNSLYLQNVQL---------------QNLEELLLWGNNFSGTIPSFIFNASKLSRLELQ 65
+ L LQN L L+EL L N L L
Sbjct: 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA------GLQLLCEGLLD 139
Query: 66 MNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDG- 124
L +L L L++++ + S L K + SNN ++
Sbjct: 140 PQC-------------RLEKLQLEYCSLSAASCE-PLASVLRAKPDFKELTVSNNDINEA 185
Query: 125 ---ILPRAIGNLSQSMEIFWMHSCNIS----GGIPEEISNLTNLIAIYLGGNKL--NGSI 175
+L + + + +E + SC ++ + +++ +L + LG NKL G
Sbjct: 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245
Query: 176 PIALGKLQ---KLQLLNLEYNQLE----GSIPDDLCRLAALFQLDLGSNKLS-----GFV 223
+ G L +L+ L + + G + L +L +L L N+L
Sbjct: 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305
Query: 224 PASFGNLTNLRSLHLGSNQITS-----IPSTLLNLKDILYLNLSSNFFT--GPLPLEIG- 275
L SL + S T+ S L + +L L +S+N G L G
Sbjct: 306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365
Query: 276 --NLKVLIKIDLSMNNFS--GVIPIT--IGYLKDLQYLFLEYNRLQGSIPDSIGDLI--- 326
VL + L+ + S + + L+ L L N L + + + +
Sbjct: 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 425
Query: 327 --NLKSLDLSNNNLSGIIPISLEKLL 350
L+ L L + S + L+ L
Sbjct: 426 GCLLEQLVLYDIYWSEEMEDRLQALE 451
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 4e-12
Identities = 56/360 (15%), Positives = 117/360 (32%), Gaps = 75/360 (20%)
Query: 80 LRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDG----ILPRAIGNLSQ 135
L+ + L+D LT + K + S+L L + +N L + + + S
Sbjct: 27 LQQCQVVRLDDCGLTEARCK-DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 85
Query: 136 SMEIFWMHSCNIS----GGIPEEISNLTNLIAIYLGGNKLNGS----------------- 174
++ + +C ++ G + + L L ++L N L +
Sbjct: 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145
Query: 175 ----------------IPIALGKLQKLQLLNLEYNQLEGSIPDDLCRL-----AALFQLD 213
+ L + L + N + + LC+ L L
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205
Query: 214 LGSNKLS----GFVPASFGNLTNLRSLHLGSNQITS------IPSTLLNLKDILYLNLSS 263
L S ++ + + +LR L LGSN++ P L + L +
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265
Query: 264 NFFTGP----LPLEIGNLKVLIKIDLSMNNF--SGVIPITIGYLKD---LQYLFLEYNRL 314
T L + + L ++ L+ N G + L+ L+ L+++
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325
Query: 315 QGSIPDSIGDLI----NLKSLDLSNNNL--SGIIPIS--LEKLL-DLKDINVSFNKLEGE 365
+ ++ L L +SNN L +G+ + L + L+ + ++ +
Sbjct: 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 8e-07
Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 38/200 (19%)
Query: 159 TNLIAIYLGGNKLN-GSIPIALGKLQKLQLLNLEYNQL--EG--SIPDDLCRLAALFQLD 213
++ ++ + +L+ L LQ+ Q++ L+ L I L AL +L+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 214 LGSNKL--SGFVPASFG---NLTNLRSLHLGSNQIT-----SIPSTLLNLKDILYLNLSS 263
L SN+L G G ++ L L + +T + STL L + L+LS
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 264 NFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIG 323
N L++L + L L+ L LEY L + + +
Sbjct: 123 NLLGDA------GLQLLCEGLLDPQ-------------CRLEKLQLEYCSLSAASCEPLA 163
Query: 324 DLI----NLKSLDLSNNNLS 339
++ + K L +SNN+++
Sbjct: 164 SVLRAKPDFKELTVSNNDIN 183
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 6e-15
Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 7/137 (5%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNG-----DVYSFGIMLIETF 553
ADFG+A + + T YMAPE D+Y+ G++L E
Sbjct: 173 ADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELA 232
Query: 554 TRKKPTDEIFSGEMT-LKHWVNDLLPISVM-KVVDAHLLSQEDKHFVIKGQCVSFVFNLA 611
+R D M + + + M +VV + + K ++ +
Sbjct: 233 SRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETI 292
Query: 612 MKCTVESPEERVNAKEI 628
+C E R++A +
Sbjct: 293 EECWDHDAEARLSAGCV 309
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 402 HHTSRKNGLLIGIRRLTYLELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDL 461
HH +G+ +G L+ + + RG G V+K ++ VAVK+F +
Sbjct: 4 HHHHHSSGVDLG-----TENLYFQSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPI 57
Query: 462 QYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD 496
Q +++++ + E + ++H N+++ I +
Sbjct: 58 QDKQSWQ-NEYEVYSLPGMKHENILQFIGAEKRGT 91
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 2e-14
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 150 GIPEEISNLTNLIAIYLGGNKLNGSIPIAL-GKLQKLQLLNLEYNQLEGSIPDDLC-RLA 207
IP + L L N+L L G+L L L L+ NQL I + +
Sbjct: 26 DIPLHTTEL------LLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGAS 78
Query: 208 ALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP-STLLNLKDILYLNLSSN 264
+ +L LG NK+ F L L++L+L NQI+ + + +L + LNL+SN
Sbjct: 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 1e-08
Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 50/151 (33%)
Query: 212 LDLGSNKLSGFVP-ASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPL 270
L L N+L FG L +L L L NQ+T I
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-------------------- 73
Query: 271 PLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD-LINLK 329
F G +Q L L N+++ I + + L LK
Sbjct: 74 -------------------FEG--------ASHIQELQLGENKIK-EISNKMFLGLHQLK 105
Query: 330 SLDLSNNNLSGIIPISLEKLLDLKDINVSFN 360
+L+L +N +S ++P S E L L +N++ N
Sbjct: 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 282 KIDLSMNNFSGVIPITI-GYLKDLQYLFLEYNRLQGSIPDSIGD-LINLKSLDLSNNNLS 339
++ L+ N + + G L L L L+ N+L I + + +++ L L N +
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK 91
Query: 340 GIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374
I L LK +N+ N++ + GSF +
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISC-VMP-GSFEH 124
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 303 DLQYLFLEYNRLQGSIPDSIGD-LINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNK 361
L L N L D + L +L L+L N L+GI P + E ++++ + NK
Sbjct: 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89
Query: 362 LEGEIPREGSF 372
++ EI F
Sbjct: 90 IK-EIS-NKMF 98
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 16/94 (17%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIF-NASKLSRL 62
+ N+L + +F +L +L +L L N + I F AS + L
Sbjct: 37 NDNELGRISSDGLFG------------RLPHLVKLELKRNQLT-GIEPNAFEGASHIQEL 83
Query: 63 ELQMNSFYGFIPN-TFGNLRNLNRLGLNDNYLTS 95
+L N I N F L L L L DN ++
Sbjct: 84 QLGENKI-KEISNKMFLGLHQLKTLNLYDNQISC 116
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 3e-14
Identities = 80/482 (16%), Positives = 156/482 (32%), Gaps = 128/482 (26%)
Query: 138 EIFWMH--SCNISGGIPEEISNL-TNLIAIYLGGNKLNGSIPIALGKLQ-KLQLLNLEYN 193
+IFW++ +CN + E + L + + + + +I + + +Q +L+ L L+
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSK 241
Query: 194 QLEGS--IPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS--- 248
E + ++ A +L L + F +T+ L + T I
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKIL---LTTRFKQVTDF----LSAATTTHISLDHH 294
Query: 249 ----TLLNLKDIL--YLNLSSNFFTGPLPLEI--GNLKVLIKIDLSMNNFSGVIPITIGY 300
T +K +L YL+ LP E+ N + L I S+ + T
Sbjct: 295 SMTLTPDEVKSLLLKYLDCR----PQDLPREVLTTNPRRLSIIAESIRDG----LATWDN 346
Query: 301 LKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNN--NLSGIIPISLEKLLDLKDINVS 358
K + ++L I S+ L+ + LS + P ++
Sbjct: 347 WKHVN-----CDKLTTIIESSLN---VLEPAEYRKMFDRLS-VFP---------PSAHIP 388
Query: 359 FNKLE---GEIPREGSFRNFLAESFK-------GNELLCGMPNLQV-----PPCRTRIHH 403
L ++ + + + K E +P++ + +H
Sbjct: 389 TILLSLIWFDVIKSDV-MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH- 446
Query: 404 TSRKNGLLIGIRRLTYLELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVA--VKVFDL 461
R + ++ + F ++LI Y Y I + ++ + L
Sbjct: 447 -----------RSI--VDHYNIPKTFDSDDLIPPYLDQYFYS-HIGHHLKNIEHPERMTL 492
Query: 462 QYREAFKNFD-IECDMMKHIRHRNLIKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTL 520
+R F +F +E + IRH + S + KP + ++
Sbjct: 493 -FRMVFLDFRFLE----QKIRHDSTAWNASGSILNTL-QQLKFYKPYICDND-------- 538
Query: 521 ATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS 580
P+Y E V+ I F K + I S K+ DLL I+
Sbjct: 539 -------PKY--ERLVNA-----------ILDFLPKIEENLICS-----KY--TDLLRIA 571
Query: 581 VM 582
+M
Sbjct: 572 LM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 6e-08
Identities = 62/388 (15%), Positives = 121/388 (31%), Gaps = 137/388 (35%)
Query: 2 AFSFN-K-LVGVVPTT----IFNVSTLNSLYLQNVQL----------QNLEELLLWGNNF 45
AF+ + K L+ TT + + L++ ++ L + LL + +
Sbjct: 261 AFNLSCKILL----TTRFKQVTDF--LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 46 SGTIPSFIFNASKLSRLELQMNSFYGFIPNTFG-NLRN-LNRLGLNDNYLTSSTPKLN-- 101
+P + L + ++R+ L DN+ + KL
Sbjct: 315 PQDLPR---EVLTTNPRRLSI----------IAESIRDGLATW---DNWKHVNCDKLTTI 358
Query: 102 ---FLSSLSNCKYLKYFSFSNNSLDGILPRAIGNL-SQSMEIFWMHSCNISGGIPEEISN 157
L+ L +Y K F + L + P + ++ + + + W ++ + N
Sbjct: 359 IESSLNVLEPAEYRKMF----DRL-SVFPPSA-HIPTILLSLIW---FDVIKSDVMVVVN 409
Query: 158 LTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPD---DL-CRLAALFQL- 212
KL K L+ + + SIP +L +L + L
Sbjct: 410 -----------------------KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 213 ----------------DLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDI 256
DL L + + G+ HL + + + L +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-------HLKNIE----HPERMTLFRM 495
Query: 257 LYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDL----QYLFL--- 309
++L+ F + K + + N ++ L+ L Y+
Sbjct: 496 VFLDF--RF--------LEQ-K-IRHDSTAWNASGSILNT----LQQLKFYKPYICDNDP 539
Query: 310 EYNRLQGSIPD---SIG-DLINLKSLDL 333
+Y RL +I D I +LI K DL
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDL 567
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 3e-13
Identities = 43/131 (32%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 186 QLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITS 245
Q+L L NQ+ P L L +L LGSN+L F +LT L L LG+NQ+T
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 246 IPS----TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYL 301
+PS L++LK L + N T LP I L L + L N + L
Sbjct: 103 LPSAVFDRLVHLK---ELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158
Query: 302 KDLQYLFLEYN 312
L + +L N
Sbjct: 159 SSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 2e-12
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 138 EIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIAL-GKLQKLQLLNLEYNQLE 196
+I ++H I+ P +L NL +YLG N+L ++P+ + L +L +L+L NQL
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 197 GSIPD---DLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLL-N 252
+P D RL L +L + NKL+ +P LT+L L L NQ+ SIP
Sbjct: 102 -VLPSAVFD--RLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157
Query: 253 LKDILYLNLSSN 264
L + + L N
Sbjct: 158 LSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 8e-12
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 32/148 (21%)
Query: 212 LDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS----TLLNLKDILYLNLSSNFFT 267
L L N+++ P F +L NL+ L+LGSNQ+ ++P +L L L+L +N T
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT---VLDLGTNQLT 101
Query: 268 GPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLIN 327
LP S V L L+ LF+ N+L +P I L +
Sbjct: 102 V-LP-------------------SAVF----DRLVHLKELFMCCNKLT-ELPRGIERLTH 136
Query: 328 LKSLDLSNNNLSGIIPISLEKLLDLKDI 355
L L L N L I + ++L L
Sbjct: 137 LTHLALDQNQLKSIPHGAFDRLSSLTHA 164
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 1e-11
Identities = 47/203 (23%), Positives = 69/203 (33%), Gaps = 69/203 (33%)
Query: 61 RLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNN 120
L L N P F +L NL L L N L +
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA------------------------- 78
Query: 121 SLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIAL- 179
LP G+ + ++ LT L LG N+L +P A+
Sbjct: 79 -----LP---------------------VGVFDSLTQLTVL---DLGTNQLT-VLPSAVF 108
Query: 180 GKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLG 239
+L L+ L + N+L +P + RL L L L N+L +F L++L +L
Sbjct: 109 DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167
Query: 240 SNQITSIP---STLLNLKDILYL 259
N P +DI+YL
Sbjct: 168 GN-----PWDCEC----RDIMYL 181
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 282 KIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD-LINLKSLDLSNNNLSG 340
+ L N + + P L +L+ L+L N+L ++P + D L L LDL N L+
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 341 IIPISLEKLLDLKDINVSFNKLEGEIPR 368
+ ++L+ LK++ + NKL E+PR
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT-ELPR 129
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 5 FNKLVGVVPTTIFNVSTLNSLYLQNVQLQ-----------NLEELLLWGNNFSGTIPSFI 53
N++ + P ++ L LYL + QL L L L N + +PS +
Sbjct: 49 DNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAV 107
Query: 54 FNA-SKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNF--LSSLSN 108
F+ L L + N +P L +L L L+ N L S P F LSSL++
Sbjct: 108 FDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTH 163
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 5e-13
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 150 GIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLC-RLAA 208
GIP + + L L N L +L L L L N+L+ S+P+ + +L +
Sbjct: 25 GIPAQTTYL------DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77
Query: 209 LFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS----TLLNLKDILYLNLSSN 264
L L+L +N+L F LT L+ L L +NQ+ S+P L LK L L N
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK---DLRLYQN 134
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 5e-12
Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 33/156 (21%)
Query: 186 QLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITS 245
L+LE N L+ L +L QL LG NKL F LT+L L+L +NQ+ S
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 246 IPS----TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYL 301
+P+ L LK L L++N LP GV L
Sbjct: 91 LPNGVFDKLTQLK---ELALNTNQLQS-LP-------------------DGV----FDKL 123
Query: 302 KDLQYLFLEYNRLQGSIPDSIGD-LINLKSLDLSNN 336
L+ L L N+L+ S+PD + D L +L+ + L +N
Sbjct: 124 TQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-10
Identities = 45/136 (33%), Positives = 60/136 (44%), Gaps = 33/136 (24%)
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS----TLLNLKDILYLNLSSNFF 266
LDL +N L F LT+L L+LG N++ S+P+ L +L YLNLS+N
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT---YLNLSTNQL 88
Query: 267 TGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD-L 325
LP +GV L L+ L L N+LQ S+PD + D L
Sbjct: 89 QS-LP-------------------NGVF----DKLTQLKELALNTNQLQ-SLPDGVFDKL 123
Query: 326 INLKSLDLSNNNLSGI 341
LK L L N L +
Sbjct: 124 TQLKDLRLYQNQLKSV 139
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 4e-07
Identities = 46/195 (23%), Positives = 70/195 (35%), Gaps = 58/195 (29%)
Query: 49 IPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSN 108
+P+ I + L+L+ NS F L +L +L L N L S + + L++
Sbjct: 22 VPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV--FNKLTS 77
Query: 109 CKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGG 168
L Y + S N L + +F LT L + L
Sbjct: 78 ---LTYLNLSTNQLQSLPNG----------VF---------------DKLTQLKELALNT 109
Query: 169 NKLNGSIPI-ALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASF 227
N+L S+P KL +L+ L L NQL+ S+PD F
Sbjct: 110 NQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPD-----------------------GVF 144
Query: 228 GNLTNLRSLHLGSNQ 242
LT+L+ + L N
Sbjct: 145 DRLTSLQYIWLHDNP 159
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 6e-06
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 282 KIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD-LINLKSLDLSNNNLSG 340
+DL N+ + L L L+L N+LQ S+P+ + + L +L L+LS N L
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 341 IIPISLEKLLDLKDINVSFNKLEGEIPREGSF 372
+ +KL LK++ ++ N+L+ +P +G F
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQ-SLP-DGVF 120
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 16/120 (13%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQNVQLQ-----------NLEELLLWGNNFSGTIPS 51
N L + +++L LYL +LQ +L L L N ++P+
Sbjct: 35 LETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPN 93
Query: 52 FIFNA-SKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNF--LSSLSN 108
+F+ ++L L L N F L L L L N L S P F L+SL
Sbjct: 94 GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQY 152
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-12
Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 150 GIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLC-RLAA 208
GIP + L L NKL KL +L L+L NQ++ S+PD + +L
Sbjct: 25 GIPSSATRL------ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTK 77
Query: 209 LFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLL-NLKDILYLNLSSN 264
L L L NKL F LT L+ L L +NQ+ S+P + L + + L +N
Sbjct: 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 4e-08
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 158 LTNLIAIYLGGNKLNGSIPIAL-GKLQKLQLLNLEYNQLEGSIPD---DLCRLAALFQLD 213
LT L + L N++ S+P + KL KL +L L N+L+ S+P+ D +L L +L
Sbjct: 51 LTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFD--KLTQLKELA 106
Query: 214 LGSNKLSGFVPASFGNLTNLRSLHLGSNQ 242
L +N+L F LT+L+ + L +N
Sbjct: 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 3e-07
Identities = 40/145 (27%), Positives = 50/145 (34%), Gaps = 49/145 (33%)
Query: 212 LDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLP 271
L+L SNKL F LT L L L NQI S LP
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS------------------------LP 68
Query: 272 LEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD-LINLKS 330
GV L L L+L N+LQ S+P+ + D L LK
Sbjct: 69 -------------------DGVF----DKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKE 104
Query: 331 LDLSNNNLSGIIPISLEKLLDLKDI 355
L L N L + ++L L+ I
Sbjct: 105 LALDTNQLKSVPDGIFDRLTSLQKI 129
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 7e-05
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 282 KIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD-LINLKSLDLSNNNLSG 340
+++L N + L L L L N++Q S+PD + D L L L L N L
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQS 90
Query: 341 IIPISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374
+ +KL LK++ + N+L+ +P G F
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKS-VPD-GIFDR 122
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 6e-04
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 18/111 (16%)
Query: 12 VPTTIFNVSTLNSLYLQNVQLQ-----------NLEELLLWGNNFSGTIPSFIFNA-SKL 59
VPT I S+ L L++ +LQ L +L L N ++P +F+ +KL
Sbjct: 22 VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKL 78
Query: 60 SRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNF--LSSLSN 108
+ L L N F L L L L+ N L S P F L+SL
Sbjct: 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQK 128
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 4e-12
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 1/100 (1%)
Query: 169 NKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPD-DLCRLAALFQLDLGSNKLSGFVPASF 227
L + L L +E Q + DL L L L + + L P +F
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76
Query: 228 GNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFT 267
L L+L N + S+ + + L LS N
Sbjct: 77 HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 1e-08
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 32 LQNLEELLLWGNNFSGTIPSFIF-NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND 90
+NL EL + + +L L + + P+ F L+RL L+
Sbjct: 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89
Query: 91 NYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLD 123
N L S + + LS L+ S N L
Sbjct: 90 NALESLSW--KTVQGLS----LQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 2e-08
Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 25/124 (20%)
Query: 216 SNKLSGFVPASFGNLTNLRSLHLGSNQ-ITSIPSTLLNLKDILYLNLSSNFFTGPLPLEI 274
+ + NL L++ + Q + + L
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDL----------------------- 52
Query: 275 GNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLS 334
L L + + + V P + L L L +N L+ S+ ++L+ L LS
Sbjct: 53 RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLS 111
Query: 335 NNNL 338
N L
Sbjct: 112 GNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 271 PLEIGNLKVLIKIDLSMNNFSGVIP-ITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLK 329
+ + L ++ + + + L +L+ L + + L+ PD+ L
Sbjct: 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83
Query: 330 SLDLSNNNLSGIIPISLEKLLDLKDINVSFNKL 362
L+LS N L + + L L+++ +S N L
Sbjct: 84 RLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 2e-05
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 127 PRAIGNLSQSMEIFWMHSCNISGGIPEE-ISNLTNLIAIYLGGNKLNGSIPI-ALGKLQK 184
+ E+ ++ + + + L L + + + L + A +
Sbjct: 24 LHHLPGAENLTEL-YIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81
Query: 185 LQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKL 219
L LNL +N LE S+ + +L +L L N L
Sbjct: 82 LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 6e-12
Identities = 57/330 (17%), Positives = 113/330 (34%), Gaps = 62/330 (18%)
Query: 81 RNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSL--DGI--LPRAIGNLSQS 136
++ L + +T+ K + + L +K S N++ + L I +
Sbjct: 4 FSIEGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62
Query: 137 MEIFWMHSCNISGGIPEEI-----------SNLTNLIAIYLGGNKL--NGSIPIA--LGK 181
+ S +G + +EI L + L N P+ L K
Sbjct: 63 EIAEF--SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120
Query: 182 LQKLQLLNLEYNQL-------------EGSIPDDLCRLAALFQLDLGSNKL-SGFVPA-- 225
L+ L L N L E ++ L + G N+L +G +
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180
Query: 226 -SFGNLTNLRSLHLGSNQITS------IPSTLLNLKDILYLNLSSNFFTGP----LPLEI 274
+F + L ++ + N I + L +++ L+L N FT L + +
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240
Query: 275 GNLKVLIKIDLSMNNFS--GVIPI----TIGYLKDLQYLFLEYNRLQGSIPDSIGDLI-- 326
+ L ++ L+ S G + + LQ L L+YN ++ ++ +I
Sbjct: 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300
Query: 327 ---NLKSLDLSNNNLS--GIIPISLEKLLD 351
+L L+L+ N S + + ++
Sbjct: 301 KMPDLLFLELNGNRFSEEDDVVDEIREVFS 330
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 33/247 (13%), Positives = 77/247 (31%), Gaps = 43/247 (17%)
Query: 151 IPEEISNLTNLIAIYLGGNKLN--GSIPIA--LGKLQKLQLLNLEYNQLEGSIPDD---- 202
+ + ++ I L GN + + ++ + + L++ G + D+
Sbjct: 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT-GRVKDEIPEA 82
Query: 203 -------LCRLAALFQLDLGSNKLSGFVPASFGNL----TNLRSLHLGSNQITSIPSTLL 251
L + L + L N + T L L+L +N + +
Sbjct: 83 LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 142
Query: 252 NLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFS--GVIPI--TIGYLKDLQYL 307
+ + + N L I N + T + L +
Sbjct: 143 ----------ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192
Query: 308 FLEYNRL-----QGSIPDSIGDLINLKSLDLSNNNLS--GIIPIS--LEKLLDLKDINVS 358
+ N + + + + + LK LDL +N + G ++ L+ +L+++ ++
Sbjct: 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252
Query: 359 FNKLEGE 365
L
Sbjct: 253 DCLLSAR 259
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 7e-08
Identities = 39/273 (14%), Positives = 80/273 (29%), Gaps = 38/273 (13%)
Query: 20 STLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYG----FIPN 75
L ++ +++ + + + KL + L N+F + +
Sbjct: 60 KDLEIAEFSDIFTGRVKDEIPEA---LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116
Query: 76 TFGNLRNLNRLGLNDN--------YLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILP 127
L L L++N + + +L N L+ N L+
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176
Query: 128 RAIGNL---SQSMEIFWMHSCNI-----SGGIPEEISNLTNLIAIYLGGNKL--NGSIPI 177
+ + + M I + E ++ L + L N GS +
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236
Query: 178 A--LGKLQKLQLLNLEYNQL--EG--SIPDDL--CRLAALFQLDLGSNKLS-----GFVP 224
A L L+ L L L G ++ D L L L N++
Sbjct: 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296
Query: 225 ASFGNLTNLRSLHLGSNQITSIPSTLLNLKDIL 257
+ +L L L N+ + + ++++
Sbjct: 297 VIDEKMPDLLFLELNGNRFSEEDDVVDEIREVF 329
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 30/180 (16%), Positives = 56/180 (31%), Gaps = 42/180 (23%)
Query: 229 NLTNLRSLHLGSNQIT-----SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKI 283
+++ + L N I + + + KD+ S F L++L++
Sbjct: 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89
Query: 284 DLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLI----NLKSLDLSNNNLS 339
L L + L N + + + D + L+ L L NN L
Sbjct: 90 -LLKC-------------PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135
Query: 340 --GIIPIS-----------LEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELL 386
I+ + L+ I N+LE A++F+ + LL
Sbjct: 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN----GSM--KEWAKTFQSHRLL 189
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 3e-11
Identities = 39/156 (25%), Positives = 58/156 (37%), Gaps = 16/156 (10%)
Query: 188 LNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP 247
L+ +E + L L A L L +N + +S + NLR L LG N I I
Sbjct: 30 LHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE 86
Query: 248 STLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPI-TIGYLKDLQY 306
+ + L +S N +E L L + +S N + I + L L+
Sbjct: 87 NLDAVADTLEELWISYNQIASLSGIE--KLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144
Query: 307 LFLEYNRLQGSIPDS----------IGDLINLKSLD 332
L L N L ++ + L NLK LD
Sbjct: 145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 3e-10
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 18/164 (10%)
Query: 235 SLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKI---DLSMNNFS 291
LH I + +TL LK +L LS+N +I +L + + L N
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-----KISSLSGMENLRILSLGRNLIK 83
Query: 292 GVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPIS-LEKLL 350
+ + L+ L++ YN++ S+ I L+NL+ L +SNN ++ I L L
Sbjct: 84 KIENLD-AVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALD 140
Query: 351 DLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQV 394
L+D+ ++ N L + + + E++ +PNL+
Sbjct: 141 KLEDLLLAGNPLYNDYKENNATSEYR------IEVVKRLPNLKK 178
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 5e-09
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210
+ +S L + L N + I +L ++ L++L+L N ++ I + L
Sbjct: 40 MDATLSTLKACKHLALSTNNI-EKI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS--TLLNLKDILYLNLSSN 264
+L + N+++ + L NLR L++ +N+IT+ L L + L L+ N
Sbjct: 97 ELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 8e-11
Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 24/132 (18%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPE--YGREGRVSTNGDVYSFGIMLIETFTRK 556
ADFG+++ + L +MAPE E + D YSF ++L T +
Sbjct: 171 ADFGLSQ-----QSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGE 225
Query: 557 KPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTV 616
P DE G++ + + +E I C + N+ C
Sbjct: 226 GPFDEYSYGKIKFINMI-----------------REEGLRPTIPEDCPPRLRNVIELCWS 268
Query: 617 ESPEERVNAKEI 628
P++R + I
Sbjct: 269 GDPKKRPHFSYI 280
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 435 IDRGGIGYVYK-RRIHYGMEVAVKVF-------DLQYREAFKNFDIECDMMKHIRHRNLI 486
I +GG G V+K R + VA+K + + E F+ F E +M ++ H N++
Sbjct: 27 IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86
Query: 487 KIISSCSN 494
K+ N
Sbjct: 87 KLYGLMHN 94
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 35/161 (21%)
Query: 478 KHIRHRNLIK----IISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQT-LATIGYMAPEYG 531
I HR+ +K +IS+ + K DFG+A+ + S+ QT + T Y++PE
Sbjct: 135 NGIIHRD-VKPANIMISA--TNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQA 191
Query: 532 REGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGE----MTLKHWVNDLLPISVMKVVDA 587
R V DVYS G +L E T + P F+G+ + +H V + +
Sbjct: 192 RGDSVDARSDVYSLGCVLYEVLTGEPP----FTGDSPVSVAYQH-VREDPI-PPSARHEG 245
Query: 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEER-VNAKE 627
LS + + + +K ++PE R A E
Sbjct: 246 --LSAD-------------LDAVVLKALAKNPENRYQTAAE 271
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 36/161 (22%)
Query: 478 KHIRHRNLIK----IISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQT-LATIGYMAPEYG 531
I HR+ IK +I S N K DFG+AK L + SL QT L T+ Y +PE
Sbjct: 130 MRIVHRD-IKPQNILIDS--NKTLKIFDFGIAKAL--SETSLTQTNHVLGTVQYFSPEQA 184
Query: 532 REGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGE----MTLKHWVNDLLPISVMKVVDA 587
+ D+YS GI+L E + P F+GE + +KH + D +P V
Sbjct: 185 KGEATDECTDIYSIGIVLYEMLVGEPP----FNGETAVSIAIKH-IQDSVPNVTTDVRKD 239
Query: 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEER-VNAKE 627
+ Q + N+ ++ T + R +E
Sbjct: 240 --IPQS-------------LSNVILRATEKDKANRYKTIQE 265
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 53/327 (16%), Positives = 108/327 (33%), Gaps = 46/327 (14%)
Query: 106 LSNCKYLKYFSFSNNSL--DGI--LPRAIGNLSQSMEIFWMHSCNISGGIPEEI-----S 156
S + S N+L L +A N S+ + ++ +E+ +
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77
Query: 157 NLTNLIAIYLGGNKLNGSIPIALGKL-----QKLQLLNLEYNQLEGSIPDDLCRL----- 206
N+ ++ L GN L+ L K + +L+L +N + +
Sbjct: 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137
Query: 207 AALFQLDLGSNKLS-----GFVPASFGNLTNLRSLHLGSNQITS-----IPSTLLNL-KD 255
A++ L+L N L + N+ SL+L N + S + L ++
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197
Query: 256 ILYLNLSSNFFTGPLPLEIG-----NLKVLIKIDLSMNNFSGVIPITIGYLKD----LQY 306
+ L+LS+N E+ ++ ++L +N G + LKD LQ
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257
Query: 307 LFLEYNRLQGSIPDSIGDLI-------NLKSLDLSNNNLSGIIPISLEKLLDLKDINVSF 359
++L+Y+ ++ + L + +D + + I + L+
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADV 317
Query: 360 NKLEGEIPREGSFRNFLAESFKGNELL 386
L + E + L
Sbjct: 318 PSLLNQCLIFAQKHQTNIEDLNIPDEL 344
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 42/273 (15%), Positives = 91/273 (33%), Gaps = 41/273 (15%)
Query: 33 QNLEELLLWGNNFSGTIPSFIFNA-----SKLSRLELQMNSFYGFIPNTFG-----NLRN 82
+ L L NN + A + ++ L L NS + N
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81
Query: 83 LNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSL--DGI--LPRAIGNLSQSME 138
+ L L+ N+L+ + + + + N +A NL S+
Sbjct: 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141
Query: 139 IFWMHSCNISGGIPEEISNL-----TNLIAIYLGGNKLNGSIPIALGKL-----QKLQLL 188
+ ++ +E+ + N+ ++ L GN L L K + L
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201
Query: 189 NLEYNQLEGSIPDDLCRL-----AALFQLDLGSNKLSG----FVPASFGNLTNLRSLHLG 239
+L N L +L + + L+L N L G + +L +L++++L
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261
Query: 240 SNQITSIP--------STLLNLKDILYLNLSSN 264
+ + ++ + N++ I+ ++ +
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 40/160 (25%)
Query: 478 KHIRHRNL------------IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGY 525
K I HR+L +KI DFG+A + S Q +I +
Sbjct: 139 KSIIHRDLKSNNIFLHEDNTVKI----------GDFGLATEKSRWSGSHQFEQLSGSILW 188
Query: 526 MAPE---YGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVM 582
MAPE S DVY+FGI+L E T + P +S + + ++
Sbjct: 189 MAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLP----YSN-INNRD--------QII 235
Query: 583 KVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEER 622
++V LS + ++ C + L +C + +ER
Sbjct: 236 EMVGRGSLSPDLS--KVRSNCPKRMKRLMAECLKKKRDER 273
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 435 IDRGGIGYVYKRRIHYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSC 492
I G G VY + + +VAVK+ ++ + + F E +++ RH N++ +
Sbjct: 32 IGSGSFGTVY--KGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89
Query: 493 SNDDF 497
+
Sbjct: 90 TAPQL 94
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 23/130 (17%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKP 558
DFG A D T + +MAPE S DV+S+GI+L E TR+KP
Sbjct: 148 CDFGTAC-----DIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKP 202
Query: 559 TDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVES 618
DEI +M V + + +L +C +
Sbjct: 203 FDEI------------GGPAFRIMWAV------HNGTRPPLIKNLPKPIESLMTRCWSKD 244
Query: 619 PEERVNAKEI 628
P +R + +EI
Sbjct: 245 PSQRPSMEEI 254
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 9e-06
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 435 IDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSN 494
+ RG G V + +VA+K + + K F +E + + H N++K+ +C N
Sbjct: 16 VGRGAFGVVC-KAKWRAKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLN 72
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKP 558
DFG+++ LK L T +MAPE R+ + DVYSFG++L E T ++P
Sbjct: 181 CDFGLSR--LKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQP 238
Query: 559 TDEI 562
+
Sbjct: 239 WGNL 242
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 435 IDRGGIGYVYKRRIHYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSC 492
I G G V++ H G +VAVK+ Q E F E +MK +RH N++ + +
Sbjct: 45 IGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 493 SN 494
+
Sbjct: 104 TQ 105
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 3e-10
Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 5/114 (4%)
Query: 225 ASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLE-IGNLKVLIKI 283
A + N R L L +I I + L ++ S N L+ L+ L +
Sbjct: 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTL 69
Query: 284 DLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQG-SIPDSIGDLINLKSLDLSNN 336
++ N + L DL L L N L D + L +L L + N
Sbjct: 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 6e-09
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 5/114 (4%)
Query: 153 EEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQL 212
+ +N + L G K+ I L + ++ N++ + D L L L
Sbjct: 13 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTL 69
Query: 213 DLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP--STLLNLKDILYLNLSSN 264
+ +N++ L +L L L +N + + L +LK + YL + N
Sbjct: 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 13/139 (9%)
Query: 55 NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKY 114
NA + L+L+ I N L + + +DN + L + LK
Sbjct: 17 NAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRK-------LDGFPLLRRLKT 68
Query: 115 FSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISG-GIPEEISNLTNLIAIYLGGN---K 170
+NN + I L + + + ++ G + +++L +L + + N
Sbjct: 69 LLVNNNRICRIGEGLDQAL-PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 127
Query: 171 LNGSIPIALGKLQKLQLLN 189
+ K+ ++++L+
Sbjct: 128 KKHYRLYVIYKVPQVRVLD 146
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 156 SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLG 215
+ L AI N++ + L++L+ L + N++ L L +L L
Sbjct: 39 ATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96
Query: 216 SNKLSGFVP-ASFGNLTNLRSLHLGSNQITSIP 247
+N L +L +L L + N +T+
Sbjct: 97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 259 LNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSI 318
+ L++ N ++DL VI L + N ++ +
Sbjct: 2 VKLTAELIEQAAQYT--NAVRDRELDLR-GYKIPVIENLGATLDQFDAIDFSDNEIR-KL 57
Query: 319 PDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLE 363
D L LK+L ++NN + I + L DL ++ ++ N L
Sbjct: 58 -DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 4e-10
Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 34/153 (22%)
Query: 482 HRNLIK---IISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIG---YMAPEYGREG 534
HR+ +K I + K D G+A + A IG +MAPE E
Sbjct: 154 HRD-LKCDNIFITGPTGSVKIGDLGLAT-------LKRASFAKAVIGTPEFMAPEMYEEK 205
Query: 535 RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594
+ DVY+FG+ ++E T + P E + + + + P S + E
Sbjct: 206 -YDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASF-----DKVAIPEV 259
Query: 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627
K + C ++ +ER + K+
Sbjct: 260 KEII-------------EGCIRQNKDERYSIKD 279
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 7e-10
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 499 ADFGMAKPLLKEDQSLIQTQT-LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKK 557
DFG+A D+ L Q + T+ YMAPE E + D+Y+ +L E T
Sbjct: 176 VDFGIASAT--TDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSP 233
Query: 558 PTDEIFSGE---MTLKHWVNDLLPIS 580
P + G+ + H + S
Sbjct: 234 P----YQGDQLSVMGAHINQAIPRPS 255
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 5e-09
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 186 QLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITS 245
Q+L L NQ+ P RL L +LDL +N+L+ F LT L L L NQ+ S
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 246 IPSTLL-NLKDILYLNLSSN 264
IP NLK + ++ L +N
Sbjct: 93 IPRGAFDNLKSLTHIWLLNN 112
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-06
Identities = 40/133 (30%), Positives = 50/133 (37%), Gaps = 40/133 (30%)
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS----TLLNLKDILYLNLSSNFF 266
+D L+ VP G T + L+L NQIT + L L L+L +N
Sbjct: 13 TVDCSGKSLAS-VPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLT---RLDLDNNQL 66
Query: 267 TGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLI 326
T LP +GV L L L L N+L+ SIP D
Sbjct: 67 TV-LP-------------------AGV----FDKLTQLTQLSLNDNQLK-SIPRGAFD-- 99
Query: 327 NLKSLD---LSNN 336
NLKSL L NN
Sbjct: 100 NLKSLTHIWLLNN 112
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 303 DLQYLFLEYNRLQGSIPDSIGD-LINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNK 361
Q L+L N++ + + D L L LDL NN L+ + +KL L ++++ N+
Sbjct: 31 TTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 362 LEGEIPREGSFRN 374
L+ IPR G+F N
Sbjct: 90 LKS-IPR-GAFDN 100
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 5e-09
Identities = 28/163 (17%), Positives = 52/163 (31%), Gaps = 42/163 (25%)
Query: 478 KHIRHRNLIKIISSCSN---DDFK---ADFGMAK---PLLKEDQSLIQTQTLATIGYMAP 528
K I H++L N D+ K DFG+ L + + ++AP
Sbjct: 149 KGILHKDLK-----SKNVFYDNGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAP 203
Query: 529 EYGREGRVSTNG---------DVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI 579
E R+ T DV++ G + E R+ P F
Sbjct: 204 EIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWP----FKT----------QPAE 249
Query: 580 SVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEER 622
+++ + + K + + + ++ + C EER
Sbjct: 250 AIIWQMGTGM-----KPNLSQIGMGKEISDILLFCWAFEQEER 287
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 433 NLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIIS 490
LI +G G VY R + EVA+++ D++ + K F E + RH N++ +
Sbjct: 39 ELIGKGRFGQVYHGR--WHGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMG 96
Query: 491 SCSN 494
+C +
Sbjct: 97 ACMS 100
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 6e-09
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 186 QLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITS 245
Q L L NQ+ P L L QL SNKL+ F LT L L L N + S
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 246 IPSTLL-NLKDILYLNLSSN 264
IP NLK + ++ L +N
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 40/133 (30%)
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS----TLLNLKDILYLNLSSNFF 266
++ + +L+ VPA G T+ + L L +NQIT + L+NL+ L +SN
Sbjct: 16 LVNCQNIRLAS-VPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQ---QLYFNSNKL 69
Query: 267 TGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLI 326
T +P +GV L L L L N L+ SIP D
Sbjct: 70 TA-IP-------------------TGV----FDKLTQLTQLDLNDNHLK-SIPRGAFD-- 102
Query: 327 NLKSLD---LSNN 336
NLKSL L NN
Sbjct: 103 NLKSLTHIYLYNN 115
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 29/106 (27%), Positives = 40/106 (37%), Gaps = 38/106 (35%)
Query: 158 LTNLIAIYLGGNKLNGSIPI-ALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGS 216
L NL +Y NKL +IP KL +L L+L N L+ SIP
Sbjct: 56 LVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLK-SIPR--------------- 98
Query: 217 NKLSGFVPASFGNLTNLRSLHLGSNQ---ITSIPSTLLNLKDILYL 259
+F NL +L ++L +N DI+YL
Sbjct: 99 --------GAFDNLKSLTHIYLYNNPWDCECR---------DIMYL 127
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 303 DLQYLFLEYNRLQGSIPDSIGD-LINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNK 361
D Q L+L N++ + + D L+NL+ L ++N L+ I +KL L ++++ N
Sbjct: 34 DKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 362 LEGEIPREGSFRN 374
L+ IPR G+F N
Sbjct: 93 LKS-IPR-GAFDN 103
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 6e-09
Identities = 31/136 (22%), Positives = 46/136 (33%), Gaps = 30/136 (22%)
Query: 499 ADFGMAK------------PLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFG 546
ADFG+A+ LK+ + + +MAPE DV+SFG
Sbjct: 150 ADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFG 209
Query: 547 IMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSF 606
I+L E R D LP + +D L + C
Sbjct: 210 IVLCEIIGRVNADP--------------DYLPRT----MDFGLNVRGFLDRYCPPNCPPS 251
Query: 607 VFNLAMKCTVESPEER 622
F + ++C PE+R
Sbjct: 252 FFPITVRCCDLDPEKR 267
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 435 IDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCS 493
+ +G G K G + +K E + F E +M+ + H N++K I
Sbjct: 18 LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLY 77
Query: 494 ND 495
D
Sbjct: 78 KD 79
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKP 558
DFG+A+ + + +MAPE R S DV+S+G++L E T + P
Sbjct: 158 TDFGLAREWHRTTK----MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVP 213
Query: 559 TDEI 562
I
Sbjct: 214 FRGI 217
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 435 IDRGGIGYVYKRRIHYGMEVAVKVF----DLQYREAFKNFDIECDMMKHIRHRNLIKIIS 490
I GG G VY+ G EVAVK D + +N E + ++H N+I +
Sbjct: 15 IGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRG 73
Query: 491 SCSN 494
C
Sbjct: 74 VCLK 77
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 18/148 (12%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLA------TIGYMAPEYGRE-------GRVSTNGDVYSF 545
+DFG++ L + A TI YMAPE D+Y+
Sbjct: 162 SDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYAL 221
Query: 546 GIMLIETFTRKK---PTDEIFSGEMTLKHWVNDLLPISVMK--VVDAHLLSQEDKHFVIK 600
G++ E F R P + + +M + V + M+ V + + +
Sbjct: 222 GLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKEN 281
Query: 601 GQCVSFVFNLAMKCTVESPEERVNAKEI 628
V + C + E R+ A+
Sbjct: 282 SLAVRSLKETIEDCWDQDAEARLTAQXA 309
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 417 LTYLELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDM 476
E + LI RG G VYK + VAVKVF R+ F N
Sbjct: 3 AAASEPSLDLDNLKLLELIGRGRYGAVYKGSLD-ERPVAVKVFSFANRQNFINE-KNIYR 60
Query: 477 MKHIRHRNLIKIISSCSNDD 496
+ + H N+ + I
Sbjct: 61 VPLMEHDNIARFIVGDERVT 80
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-08
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 157 NLTNLIAIYLGGNKLN-GSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLG 215
+++ + L ++ N G + + ++L+ L+ L SI +L +L L +L+L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72
Query: 216 SNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS--TLLNLKDILYLNLSSN 264
N++SG + NL L+L N+I + + L L+++ L+L +
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-07
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 229 NLTNLRSLHLGSNQIT--SIPSTLLNLKDILYLNLSSNFFT--GPLPLEIGNLKVLIKID 284
++++ L L +++ + +++ +L+ + T LP L L K++
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLE 70
Query: 285 LSMNNFSGVIPITIGYLKDLQYLFLEYNRLQG-SIPDSIGDLINLKSLDLSNN 336
LS N SG + + +L +L L N+++ S + + L NLKSLDL N
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 10/117 (8%)
Query: 55 NASKLSRLELQMNSF-YGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLK 113
S + L L + G + L L + LTS +++L LK
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-------IANLPKLNKLK 67
Query: 114 YFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISG-GIPEEISNLTNLIAIYLGGN 169
S+N + G L ++ + I E + L NL ++ L
Sbjct: 68 KLELSDNRVSGGLEVLAEKC-PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 276 NLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSN 335
++K L+ +D S +N G + ++L++L L SI + + L LK L+LS+
Sbjct: 18 DVKELV-LDNSRSN-EGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSD 73
Query: 336 NNLSGIIPISLEKLLDLKDINVSFNKLE 363
N +SG + + EK +L +N+S NK++
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 7e-04
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 18/115 (15%)
Query: 18 NVSTLNSLYLQNVQ------------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQ 65
S + L L N + + LE L + +I + + +KL +LEL
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72
Query: 66 MNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNN 120
N G + NL L L+ N + L+ + L + LK N
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKD----LSTIEPLKKLENLKSLDLFNC 123
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-08
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 157 NLTNLIAIYLGGNKLN-GSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLG 215
+ + L K N G I + L+ L+L L S+ +L +L L +L+L
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79
Query: 216 SNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS--TLLNLKDILYLNLSSN 264
N++ G + L NL L+L N++ I + L L+ + L+L +
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 7e-05
Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 28/136 (20%)
Query: 226 SFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDL 285
+ + L L + I ++ +L+L + + NL
Sbjct: 22 TPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----SVSNLP------- 68
Query: 286 SMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPIS 345
L L+ L L NR+ G + L NL L+LS N L I +
Sbjct: 69 --------------KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLE 114
Query: 346 -LEKLLDLKDINVSFN 360
L+KL LK +++
Sbjct: 115 PLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 8e-04
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 288 NNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLE 347
+ G I +L++L L L S+ ++ L LK L+LS N + G + + E
Sbjct: 35 KSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAE 92
Query: 348 KLLDLKDINVSFNKLE 363
KL +L +N+S NKL+
Sbjct: 93 KLPNLTHLNLSGNKLK 108
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 17/127 (13%), Positives = 27/127 (21%), Gaps = 40/127 (31%)
Query: 499 ADFGMAKPLLKEDQSLIQTQT---LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR 555
D G + T G+ APE R + D+Y+ G L
Sbjct: 223 IDLGAVSRI---------NSFGYLYGTPGFQAPEIVR-TGPTVATDIYTVGRTLAALTLD 272
Query: 556 KKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCT 615
+G + D + L +
Sbjct: 273 LPT----RNGR-YVDGLPEDDPVLKTYDSYGR----------------------LLRRAI 305
Query: 616 VESPEER 622
P +R
Sbjct: 306 DPDPRQR 312
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 63/373 (16%), Positives = 122/373 (32%), Gaps = 56/373 (15%)
Query: 34 NLEELLLWGNNFSGTIPSFIF----NASKLSRLELQMNSFYGF----IPNTFGNLRNLNR 85
++ LL+ ++FS ++ + + L L M F + N R+L
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224
Query: 86 LGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSC 145
+ + D + + F + +N + S + D +P NL ++ +
Sbjct: 225 VKVGDFEILEL---VGFFKAAANLEEFCGGSLNE---DIGMPEKYMNLVFPRKLCRLGLS 278
Query: 146 NIS-GGIPEEISNLTNLIAIYLGGNKLNGSIPI-ALGKLQKLQLLNLEYNQLEGSIPDD- 202
+ +P + + L L + K L++L I D
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-----NVIGDRG 333
Query: 203 LCRLAA----LFQLDLGSNKLSGFVPASFGNLT------------NLRSLHLGSNQIT-- 244
L LA L +L + + G ++ L + + + IT
Sbjct: 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393
Query: 245 ---SIPSTLLNLKDILYLNLSSNFFTGPLPLEIG------NLKVLIKIDLSMN--NFSGV 293
SI + L NL D + L LPL+ G K L + + + +
Sbjct: 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453
Query: 294 IPITIG-YLKDLQYLFLEYNRLQ-GSIPDSIGDLINLKSLDLSNNNLS--GIIPISLEKL 349
IG Y +++++ L Y + + NL+ L++ S I + KL
Sbjct: 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA-VTKL 512
Query: 350 LDLKDINVSFNKL 362
L+ + V +
Sbjct: 513 PSLRYLWVQGYRA 525
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 9e-06
Identities = 41/285 (14%), Positives = 87/285 (30%), Gaps = 35/285 (12%)
Query: 32 LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYG--FIPNTFGNLRNLNRLGLN 89
NLEE N +P N +L S+ G +P F + +L L
Sbjct: 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301
Query: 90 DNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISG 149
L + + + + C L+ N D L + + ++ +
Sbjct: 302 YALLETE----DHCTLIQKCPNLEVLETRNVIGDRGL-EVLAQYCKQLKRLRIERGADEQ 356
Query: 150 GIPEEISNLT------------NLIAIYLGGNKLNGSIPIALGK----LQKLQLLNLEYN 193
G+ +E ++ L + + + + ++G L +L+ L+
Sbjct: 357 GMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE 416
Query: 194 QLEGSIPDD------LCRLAALFQLDL--GSNKLSGFVPASFG-NLTNLRSLHLGSNQIT 244
+ +P D L L + L+ + G N+R + LG +
Sbjct: 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES 476
Query: 245 --SIPSTLLNLKDILYLNLSSNFFTGP-LPLEIGNLKVLIKIDLS 286
+ ++ L + F+ + + L L + +
Sbjct: 477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 4e-08
Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 11/140 (7%)
Query: 499 ADFGMAKPLL--KEDQSLIQTQTLATIGYMAPE------YGREGRVSTNGDVYSFGIMLI 550
AD G+A + + + + T YM PE + D+YSFG++L
Sbjct: 184 ADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILW 243
Query: 551 ETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMK--VVDAHLLSQEDKHFVIKGQCVSFVF 608
E R + ++ V M+ V L + +C+ +
Sbjct: 244 EVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSD-ECLRQMG 302
Query: 609 NLAMKCTVESPEERVNAKEI 628
L +C +P R+ A +
Sbjct: 303 KLMTECWAHNPASRLTALRV 322
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 433 NLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSC 492
I +G G V+ + G +VAVKVF ++ + E +RH N++ I++
Sbjct: 43 KQIGKGRYGEVWMGKWR-GEKVAVKVFFTTEEASWFR-ETEIYQTVLMRHENILGFIAAD 100
Query: 493 SNDD 496
Sbjct: 101 IKGT 104
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 6e-08
Identities = 37/166 (22%), Positives = 58/166 (34%), Gaps = 44/166 (26%)
Query: 478 KHIRHRNL----IKIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGR 532
H HR++ + K DFGMA+ + + + + +M PE
Sbjct: 159 NHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFM 218
Query: 533 EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLP---ISVMKVVDAHL 589
EG ++ D +SFG++L E F+ G M P S +V+
Sbjct: 219 EGIFTSKTDTWSFGVLLWEIFSL---------GYM----------PYPSKSNQEVL---- 255
Query: 590 LSQEDKHFVIKGQ-------CVSFVFNLAMKCTVESPEERVNAKEI 628
FV G C V+ + +C PE+R N I
Sbjct: 256 ------EFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 295
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 7e-08
Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 29/127 (22%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNG---DVYSFGIMLIETFTR 555
+ + S + ++APE ++ TN D++SF ++L E TR
Sbjct: 155 SMADVKF-------SFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTR 207
Query: 556 KKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCT 615
+ P ++ + E+ MKV E I V L C
Sbjct: 208 EVPFADLSNMEI-------------GMKVA------LEGLRPTIPPGISPHVSKLMKICM 248
Query: 616 VESPEER 622
E P +R
Sbjct: 249 NEDPAKR 255
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 435 IDRGGIGYVYKRRIHYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSC 492
++ G ++K R G ++ VKV ++ ++F+ EC ++ H N++ ++ +C
Sbjct: 18 LNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGAC 76
Query: 493 SN 494
+
Sbjct: 77 QS 78
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 37/166 (22%), Positives = 58/166 (34%), Gaps = 44/166 (26%)
Query: 478 KHIRHRNL----IKIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGR 532
H HR++ + K DFGMA+ + + + + +M PE
Sbjct: 200 NHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFM 259
Query: 533 EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLP---ISVMKVVDAHL 589
EG ++ D +SFG++L E F+ G M P S +V+
Sbjct: 260 EGIFTSKTDTWSFGVLLWEIFSL---------GYM----------PYPSKSNQEVL---- 296
Query: 590 LSQEDKHFVIKGQ-------CVSFVFNLAMKCTVESPEERVNAKEI 628
FV G C V+ + +C PE+R N I
Sbjct: 297 ------EFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 336
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
ADFG+A+ L+++++ + I + APE GR + DV+SFGI+L E T
Sbjct: 405 ADFGLAR-LIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 459
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 19/144 (13%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLA--TIGYMAPE------YGREGRVSTNGDVYSFGIMLI 550
AD G+A + L T YMAPE D+++FG++L
Sbjct: 155 ADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLW 214
Query: 551 ETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH------LLSQEDKHFVIKGQCV 604
E R + + V + M+ V + ++ +
Sbjct: 215 EVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSD-----PTL 269
Query: 605 SFVFNLAMKCTVESPEERVNAKEI 628
+ + L +C ++P R+ A I
Sbjct: 270 TSLAKLMKECWYQNPSARLTALRI 293
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 433 NLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSC 492
+ +G G V++ G VAVK+F + +++ + E +RH N++ I+S
Sbjct: 14 ECVGKGRYGEVWRGSWQ-GENVAVKIFSSRDEKSWFR-ETELYNTVMLRHENILGFIASD 71
Query: 493 SNDDFK 498
Sbjct: 72 MTSRHS 77
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
ADFG+A+ L+++++ + I + APE GR + DV+SFGI+L E T
Sbjct: 322 ADFGLAR-LIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 376
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 35/137 (25%), Positives = 51/137 (37%), Gaps = 33/137 (24%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKP 558
+DFGM++ + + + APE GR S+ DV+SFGI+L ETF+
Sbjct: 255 SDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSL--- 311
Query: 559 TDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG-------QCVSFVFNLA 611
G + N Q+ + FV KG C VF L
Sbjct: 312 ------GASPYPNLSN-----------------QQTREFVEKGGRLPCPELCPDAVFRLM 348
Query: 612 MKCTVESPEERVNAKEI 628
+C P +R + I
Sbjct: 349 EQCWAYEPGQRPSFSTI 365
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 6e-07
Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 61/173 (35%)
Query: 478 KHIRHRNL------------IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGY 525
+ HR+L +KI ADFG+++ + D I +
Sbjct: 193 RKFVHRDLATRNCLVGENMVVKI----------ADFGLSRNIYSADYYKADGNDAIPIRW 242
Query: 526 MAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLP---ISVM 582
M PE R +T DV+++G++L E F+ G P ++
Sbjct: 243 MPPESIFYNRYTTESDVWAYGVVLWEIFSY---------GLQ----------PYYGMAHE 283
Query: 583 KVVDAHLLSQEDKHFVIKGQ-------CVSFVFNLAMKCTVESPEERVNAKEI 628
+V+ ++V G C ++NL C + P +R + I
Sbjct: 284 EVI----------YYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSI 326
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 7e-07
Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 32/150 (21%)
Query: 482 HRNLIKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLAT--IGYMAPEYGREGRVSTN 539
+ L+KI DFG+AK + E + + + + APE +E +
Sbjct: 169 NDRLVKI----------GDFGLAK-AVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYA 217
Query: 540 GDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVI 599
DV+SFG+ L E T + + + L + M V+ +
Sbjct: 218 SDVWSFGVTLYELLTHCDSSQSPPTKFLELIG-----IAQGQMTVLRLT-------ELLE 265
Query: 600 KGQ-------CVSFVFNLAMKCTVESPEER 622
+G+ C + V++L C R
Sbjct: 266 RGERLPRPDKCPAEVYHLMKNCWETEASFR 295
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 7e-07
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
ADFG+++ L+ D I + APE + S DV++FG++L E T
Sbjct: 360 ADFGLSR-LMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 414
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 39/140 (27%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKP 558
DFGM++ + D + +T+ I +M PE + +T DV+SFG++L E FT
Sbjct: 200 GDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTY--- 256
Query: 559 TDEIFSGEMTLKHWVNDLLP---ISVMKVVDAHLLSQEDKHFVIKGQ-------CVSFVF 608
G+ P +S + + + +G+ C V+
Sbjct: 257 ------GKQ----------PWYQLSNTEAI----------DCITQGRELERPRACPPEVY 290
Query: 609 NLAMKCTVESPEERVNAKEI 628
+ C P++R + K++
Sbjct: 291 AIMRGCWQREPQQRHSIKDV 310
|
| >3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
DFGM++ + D + T+ I +M PE + +T DV+SFG++L E FT
Sbjct: 175 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFT 230
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 61/173 (35%)
Query: 478 KHIRHR------------NLIKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGY 525
+ HR N++KI ADFG+A+ + D T + +
Sbjct: 222 QKCIHRDLAARNVLVTENNVMKI----------ADFGLARDINNIDYYKKTTNGRLPVKW 271
Query: 526 MAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLP---ISVM 582
MAPE + + DV+SFG+++ E FT G P I V
Sbjct: 272 MAPEALFDRVYTHQSDVWSFGVLMWEIFTL---------GGS----------PYPGIPVE 312
Query: 583 KVVDAHLLSQEDKHFVIKGQ-------CVSFVFNLAMKCTVESPEERVNAKEI 628
++ + +G C + ++ + C P +R K++
Sbjct: 313 ELFK----------LLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQL 355
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 22/89 (24%)
Query: 478 KHIRHR------------NLIKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGY 525
K+ HR ++ KI DFG+A+ ++ + +++ + +
Sbjct: 183 KNCIHRDVAARNVLLTNGHVAKI----------GDFGLARDIMNDSNYIVKGNARLPVKW 232
Query: 526 MAPEYGREGRVSTNGDVYSFGIMLIETFT 554
MAPE + + DV+S+GI+L E F+
Sbjct: 233 MAPESIFDCVYTVQSDVWSYGILLWEIFS 261
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 35/138 (25%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR-KK 557
DFGM + + + D + L + +M+PE ++G +T DV+SFG++L E T ++
Sbjct: 180 GDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQ 239
Query: 558 PTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQ-------CVSFVFNL 610
P + G +S +V+ FV++G C +F L
Sbjct: 240 P----YQG-------------LSNEQVLR----------FVMEGGLLDKPDNCPDMLFEL 272
Query: 611 AMKCTVESPEERVNAKEI 628
C +P+ R + EI
Sbjct: 273 MRMCWQYNPKMRPSFLEI 290
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 25/138 (18%), Positives = 56/138 (40%), Gaps = 35/138 (25%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR-KK 557
ADFG+++ + D + + ++A E + + + DV++FG+ + E TR +
Sbjct: 179 ADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQT 238
Query: 558 PTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQ-------CVSFVFNL 610
P ++G I ++ +++I G C+ V++L
Sbjct: 239 P----YAG-------------IENAEIY----------NYLIGGNRLKQPPECMEEVYDL 271
Query: 611 AMKCTVESPEERVNAKEI 628
+C P++R + +
Sbjct: 272 MYQCWSADPKQRPSFTCL 289
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 20/141 (14%), Positives = 33/141 (23%), Gaps = 39/141 (27%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIG---YMAPEYGREGRVSTNGDVYSFGIMLIETFTR 555
DFG A L + G +MAPE D++S M++
Sbjct: 193 CDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNG 252
Query: 556 KKPTDEIFSGEMTLKHWVNDLLPISVM-KVVDAH--------LLSQEDKHFVIKGQCVSF 606
P W + K+ + +
Sbjct: 253 CHP-------------W-TQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAI-------- 290
Query: 607 VFNLAMKCTVESPEERVNAKE 627
+ + P R +A E
Sbjct: 291 -----QEGLRKEPVHRASAME 306
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR 555
ADFG++K + D + ++A E + ++ DV++FG+ + E TR
Sbjct: 189 ADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATR 245
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 50/173 (28%)
Query: 478 KHIRHRNL-----------IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGYM 526
I H +L +K+I DFG+A + + S+++ + T+ YM
Sbjct: 127 HGIVHSDLKPANFLIVDGMLKLI----------DFGIANQMQPDTTSVVKDSQVGTVNYM 176
Query: 527 APE-----------YGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVND 575
PE + ++S DV+S G +L K P +I + L ++
Sbjct: 177 PPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDP 236
Query: 576 LLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
I + ++ + + C P++R++ E+
Sbjct: 237 NHEIEFPDIP-----EKDLQDVL-------------KCCLKRDPKQRISIPEL 271
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
ADFG+A+ + D T + +MAPE + + DV+SFG++L E FT
Sbjct: 233 ADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 288
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 22/89 (24%)
Query: 478 KHIRHR------------NLIKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGY 525
+ HR N++KI ADFG+A+ + D T + +
Sbjct: 176 QKCIHRDLAARNVLVTENNVMKI----------ADFGLARDINNIDYYKKTTNGRLPVKW 225
Query: 526 MAPEYGREGRVSTNGDVYSFGIMLIETFT 554
MAPE + + DV+SFG+++ E FT
Sbjct: 226 MAPEALFDRVYTHQSDVWSFGVLMWEIFT 254
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 4e-06
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 22/89 (24%)
Query: 478 KHIRHR------------NLIKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGY 525
+ HR +KI +DFG+++ + +ED + ++Q + +
Sbjct: 169 MKLVHRDLAARNILVAEGRKMKI----------SDFGLSRDVYEEDSYVKRSQGRIPVKW 218
Query: 526 MAPEYGREGRVSTNGDVYSFGIMLIETFT 554
MA E + +T DV+SFG++L E T
Sbjct: 219 MAIESLFDHIYTTQSDVWSFGVLLWEIVT 247
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 4e-06
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
DFG+A+ + K+ + + + +MAPE + + DV+SFG++L E F+
Sbjct: 235 CDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS 290
|
| >3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 5e-06
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
+D G+ + + D + +L I +MAPE G+ S + D++S+G++L E F+
Sbjct: 170 SDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFS 225
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 22/89 (24%)
Query: 478 KHIRHR------------NLIKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGY 525
K+ HR + KI DFG+A+ + + +++ + +
Sbjct: 164 KNCIHRDLAARNILLTHGRITKI----------CDFGLARDIKNDSNYVVKGNARLPVKW 213
Query: 526 MAPEYGREGRVSTNGDVYSFGIMLIETFT 554
MAPE + DV+S+GI L E F+
Sbjct: 214 MAPESIFNCVYTFESDVWSYGIFLWELFS 242
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 29/173 (16%), Positives = 59/173 (34%), Gaps = 50/173 (28%)
Query: 478 KHIRHRNL-----------IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGYM 526
I H +L +K+I DFG+A + + S+++ + + YM
Sbjct: 174 HGIVHSDLKPANFLIVDGMLKLI----------DFGIANQMQPDTTSVVKDSQVGAVNYM 223
Query: 527 APE-----------YGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVND 575
PE + ++S DV+S G +L K P +I + L ++
Sbjct: 224 PPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDP 283
Query: 576 LLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
I + ++ + + C P++R++ E+
Sbjct: 284 NHEIEFPDIP-----EKDLQDVL-------------KCCLKRDPKQRISIPEL 318
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 50/173 (28%)
Query: 478 KHIRHRNL-----------IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGYM 526
I H +L +K+I DFG+A + + S+++ + T+ YM
Sbjct: 146 HGIVHSDLKPANFLIVDGMLKLI----------DFGIANQMQPDTTSVVKDSQVGTVNYM 195
Query: 527 APE-----------YGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVND 575
PE + ++S DV+S G +L K P +I + L ++
Sbjct: 196 PPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDP 255
Query: 576 LLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
I + ++ + + C P++R++ E+
Sbjct: 256 NHEIEFPDIP-----EKDLQDVL-------------KCCLKRDPKQRISIPEL 290
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 7e-06
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 22/89 (24%)
Query: 478 KHIRHR------------NLIKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGY 525
+ HR N++KI DFG+A+ + K+ + + + +
Sbjct: 167 RKCIHRDLAARNILLSEKNVVKI----------CDFGLARDIYKDPDYVRKGDARLPLKW 216
Query: 526 MAPEYGREGRVSTNGDVYSFGIMLIETFT 554
MAPE + + DV+SFG++L E F+
Sbjct: 217 MAPETIFDRVYTIQSDVWSFGVLLWEIFS 245
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 478 KHIRHRNL----IKIISSCSNDDFK---ADFGMAKPLLKEDQSLIQTQTLA-TIGYMAPE 529
+I HR+L I I ++ K +DFG+ K L S + + T G++APE
Sbjct: 137 LNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPE 196
Query: 530 Y---GREGRVSTNGDVYSFGIMLIETFTRKKP 558
+ + D++S G + +
Sbjct: 197 MLSEDCKENPTYTVDIFSAGCVFYYVISEGSH 228
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 12/128 (9%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLAT--IGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR- 555
DFG+ K ++ D+ + + + APE + + DV+SFG+ L E T
Sbjct: 168 GDFGLTK-AIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYC 226
Query: 556 KKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA-HLLSQEDKHFVIKGQCVSFVFNLAMKC 614
+ + + + ++ + L C V+ L KC
Sbjct: 227 DSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPN-------CPDEVYQLMRKC 279
Query: 615 TVESPEER 622
P R
Sbjct: 280 WEFQPSNR 287
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 47.3 bits (111), Expect = 8e-06
Identities = 29/198 (14%), Positives = 56/198 (28%), Gaps = 30/198 (15%)
Query: 172 NGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFG--N 229
+ L + L L ++ ++ L L++ S L V +
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217
Query: 230 LTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNN 289
L NL L L ++ L L + +
Sbjct: 218 LPNLEKLVLYVGVEDYGFDG--DMNVFRPL------------FSKDRFPNLKWLGIVDAE 263
Query: 290 FSGVIPITIG---YLKDLQYLFLEYNRLQGS----IPDSIGDLINLKSLDLSNNNLSG-- 340
V+ L L+ + + L + D + + +LK +++ N LS
Sbjct: 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323
Query: 341 --IIPISLEKLLDLKDIN 356
+ SL +D+ D
Sbjct: 324 KKELQKSLPMKIDVSDSQ 341
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 9e-06
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 23/94 (24%)
Query: 478 KHIRHRNL------------IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGY 525
+ + HR+L +KI DFG+AK L E++ I +
Sbjct: 136 RRLVHRDLAARNVLVKTPQHVKI----------TDFGLAKLLGAEEKEYHAEGGKVPIKW 185
Query: 526 MAPEYGREGRVSTNGDVYSFGIMLIETFTR-KKP 558
MA E + DV+S+G+ + E T KP
Sbjct: 186 MALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 219
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
ADFG+A+ ++++++ + I + APE G + DV+SFGI+L+E T
Sbjct: 326 ADFGLAR-VIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVT 380
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLAT--IGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR 555
ADFG+A+ + ++ + +T A + +MA E + + +T DV+SFG++L E TR
Sbjct: 234 ADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 292
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR 555
ADFG+++ L+ D I + APE + S DV++FG++L E T
Sbjct: 153 ADFGLSR-LMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATY 208
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLAT--IGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR 555
ADFG+A+ +L + +Q A + + A E + R +T DV+SFG++L E TR
Sbjct: 166 ADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTR 224
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 11/140 (7%)
Query: 499 ADFGMAKPL--LKEDQSLIQTQTLATIGYMAPE------YGREGRVSTNGDVYSFGIMLI 550
AD G+A + + + T YMAPE + D+Y+ G++
Sbjct: 189 ADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFW 248
Query: 551 ETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMK--VVDAHLLSQEDKHFVIKGQCVSFVF 608
E R ++ V + M+ V + L + + + +
Sbjct: 249 EIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRW-QSCEALRVMA 307
Query: 609 NLAMKCTVESPEERVNAKEI 628
+ +C + R+ A I
Sbjct: 308 KIMRECWYANGAARLTALRI 327
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 8e-05
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 433 NLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSC 492
I +G G V++ + G EVAVK+F + ++ + E +RH N++ I++
Sbjct: 48 ESIGKGRFGEVWRGKWR-GEEVAVKIFSSREERSWFR-EAEIYQTVMLRHENILGFIAAD 105
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 22/89 (24%)
Query: 478 KHIRHR------------NLIKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGY 525
K HR ++KI DFG+A+ ++ + +++ + +
Sbjct: 191 KSCVHRDLAARNVLVTHGKVVKI----------CDFGLARDIMSDSNYVVRGNARLPVKW 240
Query: 526 MAPEYGREGRVSTNGDVYSFGIMLIETFT 554
MAPE EG + DV+S+GI+L E F+
Sbjct: 241 MAPESLFEGIYTIKSDVWSYGILLWEIFS 269
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 483 RNLIKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLAT--IGYMAPEYGREGRVSTNG 540
N +KI DFG+ K +L +D+ + + I + APE E + S
Sbjct: 150 ENRVKI----------GDFGLTK-VLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVAS 198
Query: 541 DVYSFGIMLIETFT 554
DV+SFG++L E FT
Sbjct: 199 DVWSFGVVLYELFT 212
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
ADFG+A+ L+++++ + I + APE G + DV+SFGI+L E T
Sbjct: 151 ADFGLAR-LIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 31/149 (20%)
Query: 483 RNLIKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLAT--IGYMAPEYGREGRVSTNG 540
N +KI DFG+ K +L +D+ + + I + APE E + S
Sbjct: 181 ENRVKI----------GDFGLTK-VLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVAS 229
Query: 541 DVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600
DV+SFG++L E FT + + + M + ++ +
Sbjct: 230 DVWSFGVVLYELFTYIEKSKSPPAEFMRMIG-----------NDKQGQMIVFHLIELLKN 278
Query: 601 GQ-------CVSFVFNLAMKCTVESPEER 622
C ++ + +C + +R
Sbjct: 279 NGRLPRPDGCPDEIYMIMTECWNNNVNQR 307
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 42/166 (25%), Positives = 64/166 (38%), Gaps = 47/166 (28%)
Query: 478 KHIRHRNLIK---IISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLA-TIGYMAPE--- 529
I HR+ IK ++ + + K +DFG +K L + T+T T+ YMAPE
Sbjct: 141 NQIVHRD-IKGDNVLINTYSGVLKISDFGTSKRLAGINP---CTETFTGTLQYMAPEIID 196
Query: 530 YGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVM-KVVDAH 588
G G D++S G +IE T K P + P + M KV
Sbjct: 197 KGPRGY-GKAADIWSLGCTIIEMATGKPP-------------FYELGEPQAAMFKVGMFK 242
Query: 589 L-------LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627
+ +S E K F+ +KC P++R A +
Sbjct: 243 VHPEIPESMSAEAKAFI-------------LKCFEPDPDKRACAND 275
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
+DFGM + + +DQ T T + + +PE R S+ DV+SFG+++ E F+
Sbjct: 146 SDFGMTR-FVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS 200
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR-KK 557
ADFG+A L +D+ L+ ++ I +MA E G+ + DV+S+G+ + E T +
Sbjct: 157 ADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAE 216
Query: 558 P 558
P
Sbjct: 217 P 217
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
+DFGM + + +DQ + T + + APE + S+ DV++FGI++ E F+
Sbjct: 146 SDFGMTR-YVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFS 200
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 11/56 (19%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
+DFG+++ + +D+ + + + PE + S+ D+++FG+++ E ++
Sbjct: 162 SDFGLSR-YVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 216
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 499 ADFGMAKPLLKEDQSLIQTQ-TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR-K 556
DFG+ + L + D + + + APE + S D + FG+ L E FT +
Sbjct: 163 GDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQ 222
Query: 557 KP 558
+P
Sbjct: 223 EP 224
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 39/167 (23%), Positives = 57/167 (34%), Gaps = 46/167 (27%)
Query: 478 KHIRHRNL------------IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLAT--I 523
+ HR+L +KI ADFG+AK LL D+ + I
Sbjct: 146 RRCVHRDLAARNILVESEAHVKI----------ADFGLAK-LLPLDKDYYVVREPGQSPI 194
Query: 524 GYMAPEYGREGRVSTNGDVYSFGIMLIETFTR-KKPTDEIFSGEMTLKHWVNDLLPISVM 582
+ APE + S DV+SFG++L E FT K + +M
Sbjct: 195 FWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKS-------------CSPSAEFLRMM 241
Query: 583 KVVDAHLLSQEDKHFVIKGQ-------CVSFVFNLAMKCTVESPEER 622
+ +GQ C + V L C SP++R
Sbjct: 242 GCERDVPALSRLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDR 288
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 3e-05
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLAT--IGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR- 555
+DFG++K L D S ++ + + APE + S+ DV+S+G+ + E +
Sbjct: 478 SDFGLSK-ALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYG 536
Query: 556 KKP 558
+KP
Sbjct: 537 QKP 539
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLAT--IGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR 555
ADFG+A+ + ++ + +T A + +MA E + + +T DV+SFG++L E TR
Sbjct: 170 ADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 228
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLAT--IGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR- 555
+DFG++K L+ D++ + QT + + APE + S+ DV+SFG+++ E F+
Sbjct: 159 SDFGLSK-ALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYG 217
Query: 556 KKP 558
+KP
Sbjct: 218 QKP 220
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
DFG+++ +++ ++ I +MAPE R ++ DV+ FG+ + E
Sbjct: 533 GDFGLSR-YMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILM 587
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR-KK 557
DFG+AK L E++ I +MA E + DV+S+G+ + E T K
Sbjct: 159 TDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSK 218
Query: 558 P 558
P
Sbjct: 219 P 219
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 434 LIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSC 492
+ GG YV +H G A+K ++ + E DM + H N++++++ C
Sbjct: 36 KLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYC 95
Query: 493 SNDD 496
+
Sbjct: 96 LRER 99
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR-KK 557
DFG+++ +++ ++ I +MAPE R ++ DV+ FG+ + E K
Sbjct: 158 GDFGLSR-YMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVK 216
Query: 558 P 558
P
Sbjct: 217 P 217
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 38/181 (20%), Positives = 61/181 (33%), Gaps = 41/181 (22%)
Query: 478 KHIRHRNLIKI--ISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLA-----TIGYMAPE 529
I HR+ +K I S + K DFG++ L ++A T YM+PE
Sbjct: 151 HKIMHRD-VKPSNILVNSRGEIKLCDFGVSGQL---------IDSMANSFVGTRSYMSPE 200
Query: 530 YGREGRVSTNGDVYSFGIMLIETFTRKKP-----TDEIFSGEMTLKHWVNDLLPISVMKV 584
+ S D++S G+ L+E + P E+ P
Sbjct: 201 RLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTP 260
Query: 585 VDAHLLSQEDKH-----FVIKGQCV--------SFVFNLAMK-----CTVESPEERVNAK 626
D F + V S VF+L + C +++P ER + K
Sbjct: 261 GRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLK 320
Query: 627 E 627
+
Sbjct: 321 Q 321
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 499 ADFGMAKPLLKEDQSLIQTQ-TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR-K 556
+DFG+++ L + ++ T I + APE + ++ DV+SFGI++ E T +
Sbjct: 189 SDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGE 248
Query: 557 KP 558
+P
Sbjct: 249 RP 250
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLAT--IGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR- 555
+DFG++K L D S ++ + + APE + S+ DV+S+G+ + E +
Sbjct: 152 SDFGLSK-ALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYG 210
Query: 556 KKP 558
+KP
Sbjct: 211 QKP 213
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 7e-05
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 16/138 (11%)
Query: 259 LNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQG-- 316
L+L + P + VL + + + + I + +L L L NRL
Sbjct: 132 LDLK-GLRSDPDLVAQNIDVVLNRR----SCMAATLRIIEENIPELLSLNLSNNRLYRLD 186
Query: 317 SIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFL 376
+ + NLK L+LS N L + K L L+++ + N L + ++ + +
Sbjct: 187 DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246
Query: 377 AESFKGNELLCGMPNLQV 394
E F P L
Sbjct: 247 RERF---------PKLLR 255
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 7e-05
Identities = 25/201 (12%), Positives = 63/201 (31%), Gaps = 17/201 (8%)
Query: 79 NLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSME 138
+ +N L L+ S+ + + C+ LK + +D + + + +
Sbjct: 128 SFKNFKVLVLSSCEGFSTDG---LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184
Query: 139 -----IFWMHSCNIS-GGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEY 192
+ +S + ++ NL ++ L + L + +L+ L
Sbjct: 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244
Query: 193 ------NQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT-- 244
+ + L L L + + ++PA + + L +L+L +
Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304
Query: 245 SIPSTLLNLKDILYLNLSSNF 265
+ L + L +
Sbjct: 305 DLVKLLCQCPKLQRLWVLDYI 325
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLAT--IGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR- 555
+DFG+ + +L++D T I + +PE + ++ DV+S+GI+L E +
Sbjct: 189 SDFGLGR-VLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYG 247
Query: 556 KKP 558
++P
Sbjct: 248 ERP 250
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR-KK 557
DFG+++ ++++ + T I +M+PE R +T DV+ F + + E + K+
Sbjct: 155 GDFGLSR-YIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQ 213
Query: 558 P 558
P
Sbjct: 214 P 214
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
+DFG+ K + S Q + + APE RE + ST DV+SFGI+L E ++
Sbjct: 331 SDFGLTK-----EASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYS 381
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLAT--IGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR- 555
+DFG+++ +L++D T T I + APE S+ DV+SFG+++ E
Sbjct: 193 SDFGLSR-VLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYG 251
Query: 556 KKP 558
++P
Sbjct: 252 ERP 254
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 39/280 (13%), Positives = 78/280 (27%), Gaps = 51/280 (18%)
Query: 110 KYLKYFSFSNNSLDGI----LPRAIGNLSQSMEIFWMHSCNISG-GIPEEISNLTNLIAI 164
L+ + + + + + +G+ +++ + SC + G+ + +
Sbjct: 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131
Query: 165 YLGGNKLNGSIPIALGKLQK-----LQLLNLEYNQLEGSIPDDLCR-LAA---LFQLDLG 215
L N L L L + L L N L + L LA + L L
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191
Query: 216 SNKLSG-----FVPASFGNLTNLRSLHLGSNQITS-----IPSTLLNLKDILYLNLSSNF 265
L N L+ L++ N + + L+L N
Sbjct: 192 HTGLGDEGLELLAAQLDRN-RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250
Query: 266 FTGP----LPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLK------------------D 303
+ L G + ++ +S+ + V L +
Sbjct: 251 LSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLE 310
Query: 304 LQYLFLEYNRLQGSIPDSIGDLI----NLKSLDLSNNNLS 339
L LE +R P L+ +++L +
Sbjct: 311 LLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 429 FSENNLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIK 487
I G G V R H G +VAVK+ DL+ ++ + E +M+ +H N+++
Sbjct: 47 LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVE 106
Query: 488 IISS 491
+ S
Sbjct: 107 MYKS 110
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 429 FSENNLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIK 487
++ I +G G VY + G EVA++ +LQ + + E +M+ ++ N++
Sbjct: 22 YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVN 81
Query: 488 IISSCSNDD 496
+ S D
Sbjct: 82 YLDSYLVGD 90
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
+DFG+ K + S Q + + APE RE + ST DV+SFGI+L E ++
Sbjct: 159 SDFGLTK-----EASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYS 209
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 38/157 (24%), Positives = 54/157 (34%), Gaps = 26/157 (16%)
Query: 478 KHIRHRNLIKI--ISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPE----Y 530
I HR+ IK I + + K DFG++ L S+ +T+ YMAPE
Sbjct: 145 LKIIHRD-IKPSNILLDRSGNIKLCDFGISGQL---VDSIAKTRDAGCRPYMAPERIDPS 200
Query: 531 GREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590
DV+S GI L E T + P + S L V P + +
Sbjct: 201 ASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQ--LSNSEEREF 258
Query: 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627
S +FV C + +R KE
Sbjct: 259 SPSFINFVN-------------LCLTKDESKRPKYKE 282
|
| >4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 478 KHIRHRNLIKI--ISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREG 534
+ I HR+ IK I + + DFG+A+ +L L + T Y++PE
Sbjct: 144 RKILHRD-IKSQNIFLTKDGTVQLGDFGIAR-VLNSTVELARACI-GTPYYLSPEICENK 200
Query: 535 RVSTNGDVYSFGIMLIETFTRKKP 558
+ D+++ G +L E T K
Sbjct: 201 PYNNKSDIWALGCVLYELCTLKHA 224
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRV-STNGDVYSFGIMLIETFTR-K 556
+D G++ +L +D I ++ PE + + D +SFG L E +
Sbjct: 163 SDPGISITVLPKDI------LQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGD 216
Query: 557 KP 558
KP
Sbjct: 217 KP 218
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 429 FSENNLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIK 487
+ + G G VYK + G A KV + + E +++ +E +++ H ++K
Sbjct: 21 WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVK 80
Query: 488 IISSCSNDD 496
++ + +D
Sbjct: 81 LLGAYYHDG 89
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 24/93 (25%)
Query: 478 KHIRHR------------NLIKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGY 525
+ + HR ++K+ D G+ + + + T Y
Sbjct: 155 RRVMHRDIKPANVFITATGVVKL----------GDLGLGR-FFSSKTTAAHSLV-GTPYY 202
Query: 526 MAPEYGREGRVSTNGDVYSFGIMLIETFTRKKP 558
M+PE E + D++S G +L E + P
Sbjct: 203 MSPERIHENGYNFKSDIWSLGCLLYEMAALQSP 235
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 7e-04
Identities = 7/78 (8%), Positives = 18/78 (23%), Gaps = 20/78 (25%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEY----------GREGRVSTNGDVYSFGIM 548
F + G+ PE ++ D ++ G+
Sbjct: 253 TGFEHLVRDGAS------AVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLA 306
Query: 549 LIETFTRKKPTDEIFSGE 566
+ + P + +
Sbjct: 307 IYWIWCADLP----NTDD 320
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 429 FSENNLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIK 487
F + G G VYK G VA+K ++ + E +M+ +++K
Sbjct: 31 FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE--SDLQEIIKEISIMQQCDSPHVVK 88
Query: 488 IISSCSNDD 496
S +
Sbjct: 89 YYGSYFKNT 97
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT 554
ADFG+++ ++ + +T + +MA E +TN DV+S+G++L E +
Sbjct: 184 ADFGLSR---GQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 236
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 9e-04
Identities = 28/155 (18%), Positives = 48/155 (30%), Gaps = 32/155 (20%)
Query: 478 KHIRHRNLIKI--ISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLA-TIGYMAPEYGRE 533
+ + H + +K I K DFG+ L + YMAPE +
Sbjct: 176 QGLVHLD-VKPANIFLGPRGRCKLGDFGLLVELGTAGA----GEVQEGDPRYMAPELLQG 230
Query: 534 GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593
T DV+S G+ ++E + GE + L + LS E
Sbjct: 231 SY-GTAADVFSLGLTILEVACNMELP---HGGEGWQQ------LRQGYLPPEFTAGLSSE 280
Query: 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ + + P+ R A+ +
Sbjct: 281 LRSVL-------------VMMLEPDPKLRATAEAL 302
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 628 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4asz_A | 299 | BDNF/NT-3 growth factors receptor; transferase, TR | 100.0 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 100.0 | |
| 4gt4_A | 308 | Tyrosine-protein kinase transmembrane receptor RO; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3omv_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 4fih_A | 346 | Serine/threonine-protein kinase PAK 4; kinase doma | 100.0 | |
| 4aw0_A | 311 | HPDK1, 3-phosphoinositide-dependent protein kinase | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4b9d_A | 350 | Serine/threonine-protein kinase NEK1; transferase, | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 3hyh_A | 275 | Carbon catabolite-derepressing protein kinase; kin | 100.0 | |
| 4fie_A | 423 | Serine/threonine-protein kinase PAK 4; kinase doma | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 3fpq_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4ase_A | 353 | Vascular endothelial growth factor receptor 2; tra | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 3ubd_A | 304 | Ribosomal protein S6 kinase alpha-3; kinase-inhibi | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3hmm_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 100.0 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 99.97 | |
| 4b99_A | 398 | Mitogen-activated protein kinase 7; transferase, i | 99.97 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 4f9c_A | 361 | Cell division cycle 7-related protein kinase; Ser/ | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 99.96 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 3v5w_A | 689 | G-protein coupled receptor kinase 2; inhibitor com | 99.96 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 3h4j_B | 336 | AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin | 99.95 | |
| 3fe3_A | 328 | MAP/microtubule affinity-regulating kinase 3; seri | 99.95 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.95 | |
| 2yab_A | 361 | Death-associated protein kinase 2; apoptosis, tran | 99.95 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 99.95 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 99.95 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 99.95 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 99.94 | |
| 3zgw_A | 347 | Maternal embryonic leucine zipper kinase; transfer | 99.94 | |
| 3tki_A | 323 | Serine/threonine-protein kinase CHK1; cell checkpo | 99.94 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 3niz_A | 311 | Rhodanese family protein; structural genomics, str | 99.94 | |
| 1tki_A | 321 | Titin; serine kinase, muscle, autoinhibition; 2.00 | 99.94 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 99.94 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 99.94 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 99.94 | |
| 2y0a_A | 326 | Death-associated protein kinase 1; transferase, ca | 99.94 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 99.94 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 99.94 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 99.94 | |
| 3ttj_A | 464 | Mitogen-activated protein kinase 10; JNK3, protein | 99.94 | |
| 3o0g_A | 292 | Cell division protein kinase 5; kinase activator c | 99.94 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 99.94 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 99.94 | |
| 1o6l_A | 337 | RAC-beta serine/threonine protein kinase; protein | 99.94 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 99.94 | |
| 2w4o_A | 349 | Calcium/calmodulin-dependent protein kinase type I | 99.94 | |
| 1ob3_A | 288 | PFPK5, cell division control protein 2 homolog; tr | 99.94 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 99.94 | |
| 2pmi_A | 317 | Negative RE, cyclin-dependent protein kinase PHO85 | 99.94 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 99.94 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 99.94 | |
| 3kn6_A | 325 | Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1 | 99.94 | |
| 3oz6_A | 388 | Mitogen-activated protein kinase 1, serine/threon | 99.94 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.94 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 99.94 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 99.94 | |
| 1xjd_A | 345 | Protein kinase C, theta type; PKC-theta, ATP, AMP, | 99.94 | |
| 2eue_A | 275 | Carbon catabolite derepressing protein kinase; kin | 99.94 | |
| 4fr4_A | 384 | YANK1, serine/threonine-protein kinase 32A; struct | 99.94 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 99.93 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.93 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 99.93 | |
| 2zv2_A | 298 | Calcium/calmodulin-dependent protein kinase kinas; | 99.93 | |
| 4dc2_A | 396 | Protein kinase C IOTA type; kinase, substrate, cel | 99.93 | |
| 3rp9_A | 458 | Mitogen-activated protein kinase; structural genom | 99.93 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 99.93 | |
| 2qr7_A | 342 | Ribosomal protein S6 kinase alpha-3; kinase domain | 99.93 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 99.93 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 99.93 | |
| 3uc3_A | 361 | Serine/threonine-protein kinase SRK2I; SNRK2, ABA | 99.93 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 99.93 | |
| 2yex_A | 276 | Serine/threonine-protein kinase CHK1; transferase, | 99.93 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 99.93 | |
| 3txo_A | 353 | PKC-L, NPKC-ETA, protein kinase C ETA type; phosph | 99.93 | |
| 2a2a_A | 321 | Death-associated protein kinase 2; autoinhibition, | 99.93 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 99.93 | |
| 3n9x_A | 432 | Phosphotransferase; malaria kinase, structural gen | 99.93 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 99.93 | |
| 3a8x_A | 345 | Protein kinase C IOTA type; transferase; HET: TPO; | 99.93 | |
| 2y94_A | 476 | 5'-AMP-activated protein kinase catalytic subunit; | 99.93 | |
| 3dls_A | 335 | PAS domain-containing serine/threonine-protein KI; | 99.93 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 99.93 | |
| 3g33_A | 308 | Cell division protein kinase 4; Ser/Thr protein ki | 99.93 | |
| 1cm8_A | 367 | Phosphorylated MAP kinase P38-gamma; phosphorylati | 99.93 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 99.93 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 99.93 | |
| 3v8s_A | 410 | RHO-associated protein kinase 1; dimerization, myo | 99.93 | |
| 1fot_A | 318 | TPK1 delta, CAMP-dependent protein kinase type 1; | 99.93 | |
| 2xrw_A | 371 | Mitogen-activated protein kinase 8; transcription, | 99.93 | |
| 3mtl_A | 324 | Cell division protein kinase 16; pctaire1, indirub | 99.93 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 2fst_X | 367 | Mitogen-activated protein kinase 14; active mutant | 99.93 | |
| 3q5i_A | 504 | Protein kinase; CDPK, malaria, phosphotransferase, | 99.93 | |
| 3cok_A | 278 | Serine/threonine-protein kinase PLK4; POLO-like ki | 99.93 | |
| 3gni_B | 389 | Strad alpha; kinase fold, pseudokinase, alpha heli | 99.93 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 99.93 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 99.93 | |
| 4hcu_A | 269 | Tyrosine-protein kinase ITK/TSK; transferase-trans | 99.93 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 99.93 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 99.93 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 99.93 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 99.93 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 99.93 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 99.93 | |
| 3bhy_A | 283 | Death-associated protein kinase 3; death associate | 99.93 | |
| 1ua2_A | 346 | CAK, cell division protein kinase 7; cell cycle, p | 99.93 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 99.93 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 99.93 | |
| 3gbz_A | 329 | Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide- | 99.93 | |
| 1rdq_E | 350 | PKA C-alpha, CAMP-dependent protein kinase, alpha- | 99.93 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 99.93 | |
| 4aw2_A | 437 | Serine/threonine-protein kinase MRCK alpha; transf | 99.93 | |
| 3a62_A | 327 | Ribosomal protein S6 kinase beta-1; kinase domain, | 99.93 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 99.93 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 99.93 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 99.93 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 99.93 | |
| 3c4z_A | 543 | Rhodopsin kinase; Ser/Thr kinase, RGS homology dom | 99.93 | |
| 2rku_A | 294 | Serine/threonine-protein kinase PLK1; structure of | 99.93 | |
| 2i0e_A | 353 | Protein kinase C-beta II; serine/threonine protein | 99.93 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 99.93 | |
| 3eb0_A | 383 | Putative uncharacterized protein; kinase cryptospo | 99.93 | |
| 3nsz_A | 330 | CK II alpha, casein kinase II subunit alpha; inhib | 99.92 | |
| 2owb_A | 335 | Serine/threonine-protein kinase PLK1; catalytic do | 99.92 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 99.92 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 99.92 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 99.92 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.92 | |
| 3qyz_A | 364 | Mitogen-activated protein kinase 1; transferase, s | 99.92 | |
| 2ac3_A | 316 | MAP kinase-interacting serine/threonine kinase 2; | 99.92 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 99.92 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 99.92 | |
| 2r5t_A | 373 | Serine/threonine-protein kinase SGK1; AGC protein | 99.92 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 99.92 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 99.92 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 99.92 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 99.92 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 99.92 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 99.92 | |
| 2y7j_A | 365 | Phosphorylase B kinase gamma catalytic chain, test | 99.92 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.92 | |
| 4exu_A | 371 | Mitogen-activated protein kinase 13; P38 kinase, t | 99.92 | |
| 1nxk_A | 400 | MAP kinase-activated protein kinase 2; MK2, phosph | 99.92 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 99.92 | |
| 2acx_A | 576 | G protein-coupled receptor kinase 6; GRK, G transf | 99.92 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 99.92 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 99.92 | |
| 2wtk_C | 305 | Serine/threonine-protein kinase 11; transferase-me | 99.92 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 99.92 | |
| 3kvw_A | 429 | DYRK2, dual specificity tyrosine-phosphorylation-r | 99.92 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 99.92 | |
| 2izr_A | 330 | Casein kinase I isoform gamma-3; serine/threonine- | 99.92 | |
| 3pg1_A | 362 | Mitogen-activated protein kinase, putative (MAP K | 99.92 | |
| 2vd5_A | 412 | DMPK protein; serine/threonine-protein kinase, kin | 99.92 | |
| 4ejn_A | 446 | RAC-alpha serine/threonine-protein kinase; AKT1, a | 99.92 | |
| 3lm5_A | 327 | Serine/threonine-protein kinase 17B; STK17B, serin | 99.92 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 99.92 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 99.92 | |
| 3mi9_A | 351 | Cell division protein kinase 9; P-TEFB, HIV-1, pro | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 3llt_A | 360 | Serine/threonine kinase-1, pflammer; lammer kinase | 99.92 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 99.92 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 99.92 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 99.92 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 99.92 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 99.92 | |
| 2vgo_A | 284 | Serine/threonine-protein kinase 12-A; nucleotide-b | 99.92 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 99.92 | |
| 2b9h_A | 353 | MAP kinase FUS3, mitogen-activated protein kinase | 99.92 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 99.92 | |
| 2i6l_A | 320 | Mitogen-activated protein kinase 6; MAPK6, ERK3, e | 99.92 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 99.92 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.92 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 99.92 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 99.92 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 99.92 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 99.92 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 99.92 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 99.92 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 99.92 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 99.92 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 99.92 | |
| 3byv_A | 377 | Rhoptry kinase; malaria, transferase, structural g | 99.92 | |
| 3coi_A | 353 | Mitogen-activated protein kinase 13; P38D, P38delt | 99.92 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 99.92 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 99.92 | |
| 3e3p_A | 360 | Protein kinase, putative glycogen synthase kinase; | 99.92 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 99.92 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 99.92 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 99.92 | |
| 2r3i_A | 299 | Cell division protein kinase 2; serine/threonine-p | 99.92 | |
| 2h6d_A | 276 | 5'-AMP-activated protein kinase catalytic subunit | 99.92 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 99.92 | |
| 1csn_A | 298 | Casein kinase-1; phosphotransferase; HET: ATP; 2.0 | 99.91 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 99.91 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.91 | |
| 3op5_A | 364 | Serine/threonine-protein kinase VRK1; adenosine tr | 99.91 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 99.91 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.91 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 99.91 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 99.91 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.91 | |
| 4fl3_A | 635 | Tyrosine-protein kinase SYK; transferase; HET: ANP | 99.91 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 99.91 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 99.91 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 99.91 | |
| 2v62_A | 345 | Serine/threonine-protein kinase VRK2; transferase, | 99.91 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 99.91 | |
| 1blx_A | 326 | Cyclin-dependent kinase 6; inhibitor protein, cycl | 99.91 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 99.91 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 99.91 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 99.91 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 99.91 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 99.91 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 99.91 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.91 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.91 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.91 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 99.91 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 99.91 | |
| 4hgt_A | 296 | Casein kinase I isoform delta; CK1D, inhibitor, tr | 99.91 | |
| 3uzp_A | 296 | CKI-delta, CKID, casein kinase I isoform delta; CK | 99.91 | |
| 3rgf_A | 405 | Cyclin-dependent kinase 8; protein kinase complex, | 99.91 | |
| 1vzo_A | 355 | Ribosomal protein S6 kinase alpha 5; protein kinas | 99.91 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 99.91 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 99.91 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 99.91 | |
| 2jii_A | 352 | Serine/threonine-protein kinase VRK3 molecule: VA | 99.9 | |
| 2dyl_A | 318 | Dual specificity mitogen-activated protein kinase | 99.9 | |
| 1wak_A | 397 | Serine/threonine-protein kinase SPRK1; SRPK, trans | 99.9 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 99.9 | |
| 2pml_X | 348 | PFPK7, Ser/Thr protein kinase; phosphorylati trans | 99.9 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 99.9 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 99.9 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.9 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 99.9 | |
| 2vx3_A | 382 | Dual specificity tyrosine-phosphorylation- regula | 99.9 | |
| 1q8y_A | 373 | SR protein kinase; transferase; HET: ADP ADE; 2.05 | 99.9 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 99.9 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 99.9 | |
| 3a99_A | 320 | Proto-oncogene serine/threonine-protein kinase PI; | 99.9 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 99.9 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.89 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 99.89 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.89 | |
| 1z57_A | 339 | Dual specificity protein kinase CLK1; protein tyro | 99.89 | |
| 2iwi_A | 312 | Serine/threonine-protein kinase PIM-2; nucleotide- | 99.89 | |
| 3sv0_A | 483 | Casein kinase I-like; typical kinase domain fold, | 99.89 | |
| 3fhr_A | 336 | MAP kinase-activated protein kinase 3; kinase-inhi | 99.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.89 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.89 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.89 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.89 | |
| 2eu9_A | 355 | Dual specificity protein kinase CLK3; kinase domai | 99.89 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 99.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 99.88 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.88 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.88 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.88 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.88 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 99.87 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.87 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.86 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 99.85 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.85 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.83 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.83 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.83 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.83 | |
| 3m2w_A | 299 | MAP kinase-activated protein kinase 2; small molec | 99.82 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.81 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.81 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.8 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.8 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.8 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.79 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.79 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.79 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.79 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.78 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.77 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.76 | |
| 2vuw_A | 336 | Serine/threonine-protein kinase haspin; cell cycle | 99.76 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.76 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.75 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.75 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.75 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.75 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.73 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.72 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.7 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.7 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.68 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.68 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.67 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.66 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.66 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.66 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.65 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.64 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.64 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.59 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.58 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.56 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.53 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.52 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.5 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.49 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.48 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.46 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.45 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.42 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.37 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.29 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.29 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.25 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.22 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 99.21 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.19 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.15 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.14 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.03 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.72 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.68 | |
| 1zar_A | 282 | RIO2 kinase; serine kinase, winged-helix, RIO doma | 98.63 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.27 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.25 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.19 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.15 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.54 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.41 | |
| 1zth_A | 258 | RIO1 serine protein kinase; ribosome biogenesis, r | 97.34 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.92 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.79 | |
| 4gyi_A | 397 | RIO2 kinase; protein kinase, ADP complex, phosphoa | 96.79 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.29 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.27 | |
| 3d1u_A | 288 | Putative fructosamine-3-kinase; YP_290396.1, struc | 93.28 | |
| 3tm0_A | 263 | Aminoglycoside 3'-phosphotransferase; protein kina | 91.33 | |
| 3cxl_A | 463 | N-chimerin; SH2, RHO-GAP, structural genomics cons | 87.42 | |
| 1nd4_A | 264 | Aminoglycoside 3'-phosphotransferase; protein kina | 85.63 | |
| 3f7w_A | 288 | Putative fructosamine-3-kinase; YP_290396.1, struc | 83.37 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-49 Score=444.96 Aligned_cols=389 Identities=35% Similarity=0.564 Sum_probs=325.1
Q ss_pred CcccCCCcccCCChhccCC-CCCCEEecCccC-----------CCCCCEEEccCCcceecCCcc-ccCCCCCCEEeccCC
Q 037488 1 MAFSFNKLVGVVPTTIFNV-STLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPSF-IFNASKLSRLELQMN 67 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l-~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~~~~p~~-~~~l~~L~~L~L~~N 67 (628)
|+|++|.+++.+|..+.+. ++|++|++++|+ +++|++|+|++|.+++.+|.. |.++++|++|++++|
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 5788888888888887775 889999988885 467888999999888777765 888888999999988
Q ss_pred cccccCccccCCCC-CCCEEEccCccccCCCCCCcccccccC--CCCCcEEEcccCCCCCCCchHHhccccccceeeccC
Q 037488 68 SFYGFIPNTFGNLR-NLNRLGLNDNYLTSSTPKLNFLSSLSN--CKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHS 144 (628)
Q Consensus 68 ~l~~~~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~ 144 (628)
++++..|..+.+++ +|+.|++++|.++...+ ..+.. +++|++|++++|.+++..|..+..++ .|+.|++++
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~-----~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~ 427 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPIL-----PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSF 427 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSEEEEECC-----TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCS
T ss_pred ccCccccHHHHhhhcCCcEEEccCCCcCCCcC-----hhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCEEECcC
Confidence 88888888888887 88888888888875322 12333 67788888888888777777777775 678888888
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCC
Q 037488 145 CNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVP 224 (628)
Q Consensus 145 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 224 (628)
|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+.++++|++|++++|++++..|
T Consensus 428 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence 88887778888888888888888888887778778888888888888888887778778888888888888888877778
Q ss_pred CCccCCCCCcEEEccCCcCC-cCCCCccCCCCCcEEEcCCCCCcCCCCC-------------------------------
Q 037488 225 ASFGNLTNLRSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPL------------------------------- 272 (628)
Q Consensus 225 ~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~~------------------------------- 272 (628)
..++.+++|++|+|++|+++ .+|..+..+++|++|++++|.+++.+|.
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence 78888888888888888887 4777777788888888888877655553
Q ss_pred ---------------------------------------cccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCc
Q 037488 273 ---------------------------------------EIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNR 313 (628)
Q Consensus 273 ---------------------------------------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 313 (628)
.++.+++|+.|||++|++++.+|..++.+++|+.|+|++|+
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 667 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc
Confidence 34556789999999999999999999999999999999999
Q ss_pred CcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCCCcccccccccccCCCcccCCCCCC
Q 037488 314 LQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQ 393 (628)
Q Consensus 314 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (628)
+++.+|..++++++|+.|||++|+++|.+|..+..+++|+.|++++|+++|.+|..+.+..+...+|.||+.+||.|.
T Consensus 668 l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l-- 745 (768)
T 3rgz_A 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-- 745 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS--
T ss_pred cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999762
Q ss_pred CCCcc
Q 037488 394 VPPCR 398 (628)
Q Consensus 394 ~~~~~ 398 (628)
++|.
T Consensus 746 -~~C~ 749 (768)
T 3rgz_A 746 -PRCD 749 (768)
T ss_dssp -CCCC
T ss_pred -cCCC
Confidence 3674
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=425.27 Aligned_cols=385 Identities=35% Similarity=0.550 Sum_probs=295.4
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccC---------CCCCCEEEccCCcceecCCccccCC-CCCCEEeccCCccc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ---------LQNLEELLLWGNNFSGTIPSFIFNA-SKLSRLELQMNSFY 70 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~---------l~~L~~L~ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~ 70 (628)
|+|++|.+++..|..|.++++|++|++++|+ +++|++|++++|.+++.+|..+... ++|++|+|++|+++
T Consensus 228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~ 307 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307 (768)
T ss_dssp EECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE
T ss_pred EECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC
Confidence 4566666666666667777777777777765 3467788888888877778777665 88899999999888
Q ss_pred ccCccccCCCCCCCEEEccCcccc-CCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhcccc--------------
Q 037488 71 GFIPNTFGNLRNLNRLGLNDNYLT-SSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQ-------------- 135 (628)
Q Consensus 71 ~~~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-------------- 135 (628)
+..|..|+++++|++|++++|.++ .++. ..+.++++|++|++++|.+++..|..+..+..
T Consensus 308 ~~~p~~~~~l~~L~~L~L~~n~l~~~ip~-----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~ 382 (768)
T 3rgz_A 308 GAVPPFFGSCSLLESLALSSNNFSGELPM-----DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382 (768)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCH-----HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE
T ss_pred CccchHHhcCCCccEEECCCCcccCcCCH-----HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC
Confidence 888888888899999999988887 3321 23677788888888888887777776665542
Q ss_pred ------------ccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccc
Q 037488 136 ------------SMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDL 203 (628)
Q Consensus 136 ------------~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 203 (628)
.++.|++++|.+++.+|..+.++++|+.|++++|++++.+|..++.+++|++|++++|++.+.+|..+
T Consensus 383 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 462 (768)
T 3rgz_A 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462 (768)
T ss_dssp ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 35556666666666677777777788888888888777777778888888888888888877778788
Q ss_pred cCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCC-cCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccE
Q 037488 204 CRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIK 282 (628)
Q Consensus 204 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 282 (628)
..+++|++|++++|++++..|..+..+++|+.|++++|+++ .+|.++..+++|++|++++|.+++.+|..+..+++|+.
T Consensus 463 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 88888888888888888777888888888888888888887 47777888888888888888888888888888888888
Q ss_pred EEcCCCcCCCCCccc-----------------------------------------------------------------
Q 037488 283 IDLSMNNFSGVIPIT----------------------------------------------------------------- 297 (628)
Q Consensus 283 L~Ls~N~l~~~~p~~----------------------------------------------------------------- 297 (628)
|++++|.+++.+|..
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 888888877666543
Q ss_pred -----cCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCCC-c
Q 037488 298 -----IGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREG-S 371 (628)
Q Consensus 298 -----~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~~-~ 371 (628)
++.+++|++|++++|++++.+|..++.+++|+.|+|++|.++|.+|..+..+++|+.||+++|+++|.+|... .
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 2335678888888888888888888888888888888888888888888888888888888888888888642 2
Q ss_pred ccccccccccCCCcccCCC
Q 037488 372 FRNFLAESFKGNELLCGMP 390 (628)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~ 390 (628)
...+....+..|+....+|
T Consensus 703 l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CCCCSEEECCSSEEEEECC
T ss_pred CCCCCEEECcCCcccccCC
Confidence 4445555666665544344
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-44 Score=394.43 Aligned_cols=378 Identities=17% Similarity=0.240 Sum_probs=210.3
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccCC------------------------------------------------
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQL------------------------------------------------ 32 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l------------------------------------------------ 32 (628)
|+|++|+++|.+|..|++++.|++|+|++|.+
T Consensus 86 L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l 165 (636)
T 4eco_A 86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165 (636)
T ss_dssp EECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHH
Confidence 58999999999999999999999999999843
Q ss_pred ----------------------------------------CCCCEEEccCCcceec-----------------CCcccc-
Q 037488 33 ----------------------------------------QNLEELLLWGNNFSGT-----------------IPSFIF- 54 (628)
Q Consensus 33 ----------------------------------------~~L~~L~ls~N~l~~~-----------------~p~~~~- 54 (628)
++|++|+|++|.+++. +|..+.
T Consensus 166 ~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~ 245 (636)
T 4eco_A 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW 245 (636)
T ss_dssp HHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred hhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhh
Confidence 3444555555555443 444444
Q ss_pred -CCCCCCEEeccCCcccccCccccCCCCCCCEEEccCcc-ccC--CCCCCcccccccCCCCCcEEEcccCCCCCCCch--
Q 037488 55 -NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNY-LTS--STPKLNFLSSLSNCKYLKYFSFSNNSLDGILPR-- 128 (628)
Q Consensus 55 -~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~-l~~--~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-- 128 (628)
++++|++|+|++|++.+.+|..|+++++|+.|++++|+ ++. ++..+..+..+..+++|++|++++|.++ .+|.
T Consensus 246 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~ 324 (636)
T 4eco_A 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVET 324 (636)
T ss_dssp GGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHH
T ss_pred cccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchh
Confidence 45555555555555544445555555555555555554 432 1111000001112245555555555554 3333
Q ss_pred HHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCC-CCEeecccCcccccCCccccCCC
Q 037488 129 AIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQK-LQLLNLEYNQLEGSIPDDLCRLA 207 (628)
Q Consensus 129 ~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~ 207 (628)
.++.++ .|+.|++++|.+.+.+| .+..+++|+.|++++|++. .+|..+..+++ |++|++++|++. .+|..+..+.
T Consensus 325 ~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~ 400 (636)
T 4eco_A 325 SLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKS 400 (636)
T ss_dssp HHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTC
T ss_pred hhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcc
Confidence 444443 35555555555554444 4555555555555555554 44444555555 555555555555 4444444433
Q ss_pred --CCCEEEccCCcCcccCCCCcc-------CCCCCcEEEccCCcCCcCCCCcc-CCCCCcEEEcCCCCCcCCCCCcccCC
Q 037488 208 --ALFQLDLGSNKLSGFVPASFG-------NLTNLRSLHLGSNQITSIPSTLL-NLKDILYLNLSSNFFTGPLPLEIGNL 277 (628)
Q Consensus 208 --~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l 277 (628)
+|++|++++|.+++..|..|. .+++|+.|++++|+++.+|..++ .+++|++|++++|.++..++..+...
T Consensus 401 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~ 480 (636)
T 4eco_A 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480 (636)
T ss_dssp SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence 555555555555555555555 55566666666666666665443 35666666666666663333333322
Q ss_pred c-------cccEEEcCCCcCCCCCccccC--CCCCCCEEeCCCCcCcccCChhhcCCCCCCEEEC------cCCcccccC
Q 037488 278 K-------VLIKIDLSMNNFSGVIPITIG--YLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDL------SNNNLSGII 342 (628)
Q Consensus 278 ~-------~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l------~~N~l~~~~ 342 (628)
. +|+.|+|++|+++ .+|..+. .+++|++|++++|++++ +|..+..+++|+.|++ ++|.+.+.+
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~ 558 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCC
T ss_pred cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccC
Confidence 2 6666666666666 4455444 66666666666666664 5666666666666666 345556666
Q ss_pred chhhhcCCCCCEEEccCCcceecCCCCCcccccccccccCCCccc
Q 037488 343 PISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLC 387 (628)
Q Consensus 343 ~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~ 387 (628)
|..+..+++|+.|++++|++ +.+|... +..+....+.+|+..|
T Consensus 559 p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 559 PEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPNIS 601 (636)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTTCE
T ss_pred hHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCCcc
Confidence 66666666666666666666 4555432 2444444555554443
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=381.34 Aligned_cols=357 Identities=23% Similarity=0.240 Sum_probs=258.5
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccC-----------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSF 69 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 69 (628)
|||++|.|+++.|..|.++++|++|++++|+ +++|++|+|++|.+++..|..|.++++|++|++++|++
T Consensus 38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i 117 (606)
T 3t6q_A 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117 (606)
T ss_dssp EECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCC
T ss_pred EEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCc
Confidence 6899999999999999999999999999986 56899999999999999999999999999999999999
Q ss_pred cccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccc--eeeccCCcc
Q 037488 70 YGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSME--IFWMHSCNI 147 (628)
Q Consensus 70 ~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~--~l~l~~n~~ 147 (628)
+++.+..|+++++|++|++++|.++.+.. ..+..+++|++|++++|.++++.|..|+.+. .++ .+++++|.+
T Consensus 118 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 118 SSIDFIPLHNQKTLESLYLGSNHISSIKL-----PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ-QATNLSLNLNGNDI 191 (606)
T ss_dssp SCGGGSCCTTCTTCCEEECCSSCCCCCCC-----CTTCCCTTCCEEECCSSCCCEECHHHHHTTT-TCCSEEEECTTCCC
T ss_pred ccCCcchhccCCcccEEECCCCcccccCc-----ccccCCcccCEEEcccCcccccChhhhhhhc-ccceeEEecCCCcc
Confidence 99889999999999999999999987642 2344588899999999998888888887775 455 677777777
Q ss_pred cccCCccccCC---------------------------------------------------CCCCEEEccCCcCCcccc
Q 037488 148 SGGIPEEISNL---------------------------------------------------TNLIAIYLGGNKLNGSIP 176 (628)
Q Consensus 148 ~~~~~~~~~~l---------------------------------------------------~~L~~L~L~~n~l~~~~p 176 (628)
.+..|..+... .+|+.|++++|.+.+..+
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 76655443221 045566666666665555
Q ss_pred ccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCC-cCCCC-ccCCC
Q 037488 177 IALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT-SIPST-LLNLK 254 (628)
Q Consensus 177 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-~~~l~ 254 (628)
..|..+++|++|++++|+++ .+|..+.++++|++|++++|++.+..|..+..+++|+.|++++|.+. .+|.. +..++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 55666666667777666666 45556666666666666666666665666666666666666666665 34433 55566
Q ss_pred CCcEEEcCCCCCcCCC--CCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCCh-hhcCCCCCCEE
Q 037488 255 DILYLNLSSNFFTGPL--PLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPD-SIGDLINLKSL 331 (628)
Q Consensus 255 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L 331 (628)
+|++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+. .+..+++|+.|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 6666666666665544 55566666666666666666666666666666666666666666554433 35666666666
Q ss_pred ECcCCcccccCchhhhcCCCCCEEEccCCccee
Q 037488 332 DLSNNNLSGIIPISLEKLLDLKDINVSFNKLEG 364 (628)
Q Consensus 332 ~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~ 364 (628)
++++|.+.+..|..+..+++|+.|++++|++++
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 666666666666666666666666666666654
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=383.28 Aligned_cols=382 Identities=21% Similarity=0.232 Sum_probs=273.4
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccC-----------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSF 69 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 69 (628)
|+|++|.++++.|..|.++++|++|++++|+ +++|++|+|++|.+++..|..|.++++|++|+|++|++
T Consensus 37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 116 (606)
T 3vq2_A 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence 5899999999999999999999999999986 56899999999999988899999999999999999999
Q ss_pred cccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccc---cceeeccCCc
Q 037488 70 YGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQS---MEIFWMHSCN 146 (628)
Q Consensus 70 ~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~---l~~l~l~~n~ 146 (628)
+++.+..|+++++|++|++++|.++... .+..+.++++|++|++++|.++++.|..|+.+... +..+++++|.
T Consensus 117 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~----lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~ 192 (606)
T 3vq2_A 117 ASLESFPIGQLITLKKLNVAHNFIHSCK----LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192 (606)
T ss_dssp CCSSSSCCTTCTTCCEEECCSSCCCCCC----CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC
T ss_pred ccccccccCCCCCCCEEeCCCCccccee----chHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC
Confidence 9998899999999999999999998642 12468899999999999999998877766655421 2234444444
Q ss_pred ccccCCc-------------------------------------------------------------------------
Q 037488 147 ISGGIPE------------------------------------------------------------------------- 153 (628)
Q Consensus 147 ~~~~~~~------------------------------------------------------------------------- 153 (628)
+.+..+.
T Consensus 193 l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 272 (606)
T 3vq2_A 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272 (606)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCT
T ss_pred cceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccc
Confidence 4332221
Q ss_pred -----------------------------cccCCCCCCEEEccCCcCCccccc--------------------cccCCCC
Q 037488 154 -----------------------------EISNLTNLIAIYLGGNKLNGSIPI--------------------ALGKLQK 184 (628)
Q Consensus 154 -----------------------------~~~~l~~L~~L~L~~n~l~~~~p~--------------------~~~~l~~ 184 (628)
.+..+++|+.|++++|.+ +.+|. .+..+++
T Consensus 273 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~ 351 (606)
T 3vq2_A 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPS 351 (606)
T ss_dssp TCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTT
T ss_pred cccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCC
Confidence 122333444444444444 23331 2334455
Q ss_pred CCEeecccCccccc--CCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCC--CccCCCCCcEEE
Q 037488 185 LQLLNLEYNQLEGS--IPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS--TLLNLKDILYLN 260 (628)
Q Consensus 185 L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~ 260 (628)
|++|++++|++.+. .|..+..+++|++|++++|.+++ .|..+..+++|+.|++++|++.+++. .+..+++|++|+
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence 55555555555543 25556666666666666666654 34666777777777777777766543 566677777777
Q ss_pred cCCCCCcCCCCCcccCCccccEEEcCCCcCCC-CCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCccc
Q 037488 261 LSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSG-VIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLS 339 (628)
Q Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~ 339 (628)
+++|.+++..|..+..+++|++|++++|.+++ .+|..++.+++|++|++++|++++..|..+..+++|+.|++++|+++
T Consensus 431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence 77777777777777777777777777777776 36677777777888888888777777777777777888888888777
Q ss_pred ccCchhhhcCCCCCEEEccCCcceecCCCC-Cccc-ccccccccCCCcccCC
Q 037488 340 GIIPISLEKLLDLKDINVSFNKLEGEIPRE-GSFR-NFLAESFKGNELLCGM 389 (628)
Q Consensus 340 ~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~-~~~~-~~~~~~~~~~~~~~~~ 389 (628)
+..|..+..+++|+.|++++|+++. +|.. ..+. .+....+.+|+..|..
T Consensus 511 ~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 511 FLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCC
Confidence 7777777777778888888887773 3332 2222 3555666777777654
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=382.10 Aligned_cols=360 Identities=19% Similarity=0.188 Sum_probs=218.8
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccC-----------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSF 69 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 69 (628)
|+|++|+++++.|..|.++++|++|++++|+ +++|++|++++|.+++..|..|.++++|++|++++|++
T Consensus 62 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 62 LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141 (606)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred EECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcc
Confidence 4677787777777777788888888877775 35677777777777766666677777777777777777
Q ss_pred cccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCC---------------------------------------
Q 037488 70 YGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCK--------------------------------------- 110 (628)
Q Consensus 70 ~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~--------------------------------------- 110 (628)
+++....+..+++|+.|++++|.++...+. .+..++
T Consensus 142 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~ 216 (606)
T 3t6q_A 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKE-----DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216 (606)
T ss_dssp CCCCCCTTCCCTTCCEEECCSSCCCEECHH-----HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHH
T ss_pred cccCcccccCCcccCEEEcccCcccccChh-----hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHH
Confidence 765544455566777777766666543210 111111
Q ss_pred --------------------------------------CCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCC
Q 037488 111 --------------------------------------YLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIP 152 (628)
Q Consensus 111 --------------------------------------~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~ 152 (628)
+|+.|++++|.++++.+..|..++ .++.|++++|.++ .+|
T Consensus 217 ~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~-~lp 294 (606)
T 3t6q_A 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS-GLQELDLTATHLS-ELP 294 (606)
T ss_dssp HHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCT-TCSEEECTTSCCS-CCC
T ss_pred HHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcccc-CCCEEeccCCccC-CCC
Confidence 344555555555555555555553 5667777777666 455
Q ss_pred ccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCc-cccCCCCCCEEEccCCcCcccC--CCCccC
Q 037488 153 EEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPD-DLCRLAALFQLDLGSNKLSGFV--PASFGN 229 (628)
Q Consensus 153 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~ 229 (628)
..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++.. +..+..
T Consensus 295 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 374 (606)
T 3t6q_A 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374 (606)
T ss_dssp SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT
T ss_pred hhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc
Confidence 6666677777777777777666566666666666666666666544433 3566666666666666665544 455666
Q ss_pred CCCCcEEEccCCcCCcC-CCCccCCCCCcEEEcCCCCCcCCCCC-cccCCccccEEEcCCCcCCCCCccccCCCCCCCEE
Q 037488 230 LTNLRSLHLGSNQITSI-PSTLLNLKDILYLNLSSNFFTGPLPL-EIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYL 307 (628)
Q Consensus 230 l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 307 (628)
+++|++|++++|.+..+ |..+..+++|++|++++|.+++..+. .+..+++|+.|++++|.+++..|..++.+++|++|
T Consensus 375 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence 66666666666666553 34455556666666666665544332 25556666666666666655555555556666666
Q ss_pred eCCCCcCccc---CChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCC
Q 037488 308 FLEYNRLQGS---IPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIP 367 (628)
Q Consensus 308 ~l~~n~~~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p 367 (628)
++++|++.+. .+..+..+++|+.|++++|.++++.|..|..+++|+.|++++|++++.+|
T Consensus 455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred ECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence 6666655541 12345555566666666666655555555555666666666665555444
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=396.57 Aligned_cols=382 Identities=24% Similarity=0.274 Sum_probs=254.7
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccC------------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ------------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNS 68 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~------------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 68 (628)
||||+|.|+++.|..|.++++|++|+|++|. +++|++|+|++|.+++..|..|.++++|++|+|++|.
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence 6899999999999999999999999999983 5789999999999999999999999999999999999
Q ss_pred ccccCccc--cCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccc-cc---------
Q 037488 69 FYGFIPNT--FGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLS-QS--------- 136 (628)
Q Consensus 69 l~~~~~~~--f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~-~~--------- 136 (628)
+++..+.. |+++++|++|+|++|.++...+. ..+.++++|++|++++|.+++..+..+..+. ..
T Consensus 109 l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~----~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH----PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC----GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred CCcccccCccccccCCCCEEECCCCcccccccc----hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCC
Confidence 99855554 99999999999999999876432 3578899999999999988887776665431 11
Q ss_pred ---------------------cceeeccCCcccccCCccccC--------------------------------------
Q 037488 137 ---------------------MEIFWMHSCNISGGIPEEISN-------------------------------------- 157 (628)
Q Consensus 137 ---------------------l~~l~l~~n~~~~~~~~~~~~-------------------------------------- 157 (628)
++.|++++|.+.+..+..+..
T Consensus 185 ~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~ 264 (844)
T 3j0a_A 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264 (844)
T ss_dssp BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTT
T ss_pred ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccc
Confidence 344444444333222211110
Q ss_pred CCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEE
Q 037488 158 LTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLH 237 (628)
Q Consensus 158 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 237 (628)
.++|+.|++++|.+.+..|..|..+++|+.|+|++|++.+..|..|.++++|++|+|++|.+++..|..|..+++|+.|+
T Consensus 265 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 13445555555555444444455555555555555555544444455555555555555555444444455555555555
Q ss_pred ccCCcCCcCCC-CccCCCCCcEEEcCCCCCcCCC------------------CC----------------------cccC
Q 037488 238 LGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPL------------------PL----------------------EIGN 276 (628)
Q Consensus 238 L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~------------------~~----------------------~~~~ 276 (628)
+++|.+..++. .+..+++|++|++++|.+++.. |. .+..
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~ 424 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTT
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhc
Confidence 55554444432 2333444444444444433210 00 0123
Q ss_pred CccccEEEcCCCcCCC------------------------------CCccccCCCCCCCEEeCCCCcCcccCChhhcCCC
Q 037488 277 LKVLIKIDLSMNNFSG------------------------------VIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLI 326 (628)
Q Consensus 277 l~~L~~L~Ls~N~l~~------------------------------~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 326 (628)
+++|+.|+|++|++++ ..+..|..+++|+.|+|++|++++.+|..|..++
T Consensus 425 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 504 (844)
T 3j0a_A 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504 (844)
T ss_dssp CTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCC
T ss_pred CCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchh
Confidence 4444555555554442 2234466778888888888888888888888888
Q ss_pred CCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCCCcccccccccccCCCcccCCC
Q 037488 327 NLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMP 390 (628)
Q Consensus 327 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 390 (628)
+|+.|++++|+++++.+..+. ++|+.|++++|++++.+|.. +..+....+.+|+..|..+
T Consensus 505 ~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 505 ALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp SCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred hhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 999999999988887776665 78888999999888877753 4566677788888888543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=381.31 Aligned_cols=354 Identities=22% Similarity=0.332 Sum_probs=193.1
Q ss_pred CcccCCCcccCCChhccCCCCCCEEec-CccCCC----------------------------------------------
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYL-QNVQLQ---------------------------------------------- 33 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l-~~n~l~---------------------------------------------- 33 (628)
|+|++|+|.|.+|..|++|+.|+.|+| ++|.+.
T Consensus 328 L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~ 407 (876)
T 4ecn_A 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407 (876)
T ss_dssp EECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence 689999999999999999999999999 666310
Q ss_pred ----------------CCCEEEc--cCCcceecCCccccCCCCCCEEeccCCcccc-----------------cCccccC
Q 037488 34 ----------------NLEELLL--WGNNFSGTIPSFIFNASKLSRLELQMNSFYG-----------------FIPNTFG 78 (628)
Q Consensus 34 ----------------~L~~L~l--s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----------------~~~~~f~ 78 (628)
.++.+.+ ..|.+++ +|..|.++++|+.|+|++|++++ .+|..++
T Consensus 408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~ 486 (876)
T 4ecn_A 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486 (876)
T ss_dssp HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred hhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence 0111112 1255555 45555666666666666666655 1455544
Q ss_pred --CCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCC-CCC-CCchHHhccc------cccceeeccCCccc
Q 037488 79 --NLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNS-LDG-ILPRAIGNLS------QSMEIFWMHSCNIS 148 (628)
Q Consensus 79 --~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~l~------~~l~~l~l~~n~~~ 148 (628)
++++|+.|+|++|.+....| ..+.++++|++|++++|+ +++ .+|..++.+. ..|+.|++++|.+.
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP-----~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLP-----DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCC-----GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred hccCCCCCEEECcCCCCCccCh-----HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 56666666666665443322 345555566666666665 554 4555554442 24555666666555
Q ss_pred ccCCc--cccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCC-CCEEEccCCcCcccCCC
Q 037488 149 GGIPE--EISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAA-LFQLDLGSNKLSGFVPA 225 (628)
Q Consensus 149 ~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~L~~n~l~~~~~~ 225 (628)
.+|. .|+++++|+.|+|++|++. .+| .++.+++|+.|+|++|++. .+|..+..+++ |+.|+|++|+++ .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 4454 5555666666666666555 444 5555555666666665555 45555555555 555555555555 3444
Q ss_pred CccCCC-------------------------------CCcEEEccCCcCCcCCCCcc-CCCCCcEEEcCCCCCcCCCCCc
Q 037488 226 SFGNLT-------------------------------NLRSLHLGSNQITSIPSTLL-NLKDILYLNLSSNFFTGPLPLE 273 (628)
Q Consensus 226 ~~~~l~-------------------------------~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~ 273 (628)
.+..++ +|+.|+|++|.++.+|..++ .+++|++|++++|.++..++..
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 716 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence 444433 44444444444444444433 3455555555555555322222
Q ss_pred ccC-------CccccEEEcCCCcCCCCCccccC--CCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcC------Ccc
Q 037488 274 IGN-------LKVLIKIDLSMNNFSGVIPITIG--YLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSN------NNL 338 (628)
Q Consensus 274 ~~~-------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~------N~l 338 (628)
+.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++++ |.+
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence 221 125555555555555 3444443 45555555555555553 444455555555555543 444
Q ss_pred cccCchhhhcCCCCCEEEccCCcceecCCC
Q 037488 339 SGIIPISLEKLLDLKDINVSFNKLEGEIPR 368 (628)
Q Consensus 339 ~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~ 368 (628)
.+.+|..+..+++|+.|++++|++ +.+|.
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred cccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 455555555555555555555555 44443
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=371.47 Aligned_cols=382 Identities=23% Similarity=0.235 Sum_probs=286.0
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccC-----------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSF 69 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 69 (628)
|||++|.++++.+..|.++++|+.|++++|+ +++|++|+|++|.+++..|..|.++++|++|++++|++
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 112 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc
Confidence 5899999999999999999999999999985 56899999999999999889999999999999999999
Q ss_pred cccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhcccccc----ceeeccCC
Q 037488 70 YGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSM----EIFWMHSC 145 (628)
Q Consensus 70 ~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l----~~l~l~~n 145 (628)
+++.+..|+++++|++|++++|.++.+. .+..+.++++|++|++++|.++++.+..+..+.. + +.+++++|
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~----lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~~~~~L~l~~n 187 (570)
T 2z63_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFK----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDLSLN 187 (570)
T ss_dssp CCSTTCSCTTCTTCCEEECCSSCCCCCC----CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT-CTTCCCEEECTTC
T ss_pred ccCCCccccccccccEEecCCCccceec----ChhhhcccCCCCEEeCcCCccceecHHHccchhc-cchhhhhcccCCC
Confidence 9988878999999999999999998642 1246888999999999999998887777766542 3 45555555
Q ss_pred cccccC--------------------------------------------------------------------------
Q 037488 146 NISGGI-------------------------------------------------------------------------- 151 (628)
Q Consensus 146 ~~~~~~-------------------------------------------------------------------------- 151 (628)
.+.+..
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 544433
Q ss_pred -------CccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCcc-c-------------------c
Q 037488 152 -------PEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDD-L-------------------C 204 (628)
Q Consensus 152 -------~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~-------------------~ 204 (628)
|..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+|.. + .
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEV 344 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccc
Confidence 333445566777777777665 355555555 5555555555554 22221 0 3
Q ss_pred CCCCCCEEEccCCcCcccC--CCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCC-CcccCCcccc
Q 037488 205 RLAALFQLDLGSNKLSGFV--PASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLP-LEIGNLKVLI 281 (628)
Q Consensus 205 ~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~ 281 (628)
.+++|++|++++|++++.. +..+..+++|+.|++++|.++.+|..+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 4566777777777766543 455667777777777777777776667777788888888887776554 4577778888
Q ss_pred EEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCc-ccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCC
Q 037488 282 KIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQ-GSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFN 360 (628)
Q Consensus 282 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N 360 (628)
+|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 8888888887777777777888888888888876 457777788888888888888888777777778888888888888
Q ss_pred cceecCCCC-CcccccccccccCCCcccCCC
Q 037488 361 KLEGEIPRE-GSFRNFLAESFKGNELLCGMP 390 (628)
Q Consensus 361 ~l~~~~p~~-~~~~~~~~~~~~~~~~~~~~~ 390 (628)
++++.++.. ..+..+....+.+|+..|..+
T Consensus 505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 877665543 334556666677777776544
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-42 Score=378.13 Aligned_cols=347 Identities=21% Similarity=0.302 Sum_probs=308.8
Q ss_pred CCCcccCCChhccCCCCCCEEecCccC------------------------------CCCCCEEEccCCcceecCCcccc
Q 037488 5 FNKLVGVVPTTIFNVSTLNSLYLQNVQ------------------------------LQNLEELLLWGNNFSGTIPSFIF 54 (628)
Q Consensus 5 ~N~l~~~~p~~~~~l~~L~~L~l~~n~------------------------------l~~L~~L~ls~N~l~~~~p~~~~ 54 (628)
.|++++ +|..|+++++|++|+|++|+ +++|++|+|++|.+.+.+|..|.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 689999 89899999999999999874 45689999999999999999999
Q ss_pred CCCCCCEEeccCCc-ccc-cCccccCCC------CCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCC
Q 037488 55 NASKLSRLELQMNS-FYG-FIPNTFGNL------RNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGIL 126 (628)
Q Consensus 55 ~l~~L~~L~L~~N~-l~~-~~~~~f~~l------~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 126 (628)
++++|++|+|++|+ +++ .+|..++++ ++|+.|++++|.++.++. ...+.++++|++|++++|.+++.+
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~----~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV----ETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC----HHHHTTCTTCCEEECCSCCCEEEC
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCc----hhhhccCCCCCEEeCcCCcCccch
Confidence 99999999999998 988 788888876 999999999999986542 015789999999999999999888
Q ss_pred chHHhccccccceeeccCCcccccCCccccCCCC-CCEEEccCCcCCccccccccCCC--CCCEeecccCcccccCCccc
Q 037488 127 PRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTN-LIAIYLGGNKLNGSIPIALGKLQ--KLQLLNLEYNQLEGSIPDDL 203 (628)
Q Consensus 127 p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~~p~~~ 203 (628)
| .|..++ .|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..+. +|++|++++|++.+..|..+
T Consensus 347 p-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 347 P-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp C-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred h-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence 8 787776 7999999999999 78888999999 999999999998 7888777755 89999999999999999888
Q ss_pred c-------CCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCC--------CCcEEEcCCCCCcC
Q 037488 204 C-------RLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLK--------DILYLNLSSNFFTG 268 (628)
Q Consensus 204 ~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~--------~L~~L~l~~n~l~~ 268 (628)
. .+++|++|++++|+++...+..+..+++|+.|+|++|+++.+|..++... +|++|++++|.++
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 501 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT- 501 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-
T ss_pred cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-
Confidence 8 88899999999999997655567789999999999999999998765432 9999999999999
Q ss_pred CCCCccc--CCccccEEEcCCCcCCCCCccccCCCCCCCEEeC------CCCcCcccCChhhcCCCCCCEEECcCCcccc
Q 037488 269 PLPLEIG--NLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFL------EYNRLQGSIPDSIGDLINLKSLDLSNNNLSG 340 (628)
Q Consensus 269 ~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l------~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 340 (628)
.+|..+. .+++|+.|+|++|++++ +|..+..+++|++|++ ++|++.+.+|..+..+++|+.|++++|.+.
T Consensus 502 ~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~- 579 (636)
T 4eco_A 502 KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR- 579 (636)
T ss_dssp BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-
T ss_pred ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-
Confidence 5677776 99999999999999997 8888999999999999 567888899999999999999999999995
Q ss_pred cCchhhhcCCCCCEEEccCCcceec
Q 037488 341 IIPISLEKLLDLKDINVSFNKLEGE 365 (628)
Q Consensus 341 ~~~~~~~~l~~L~~l~l~~N~l~~~ 365 (628)
.+|..+. ++|+.|++++|++...
T Consensus 580 ~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 580 KVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp BCCSCCC--TTCCEEECCSCTTCEE
T ss_pred ccCHhHh--CcCCEEECcCCCCccc
Confidence 5566554 7999999999998753
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=369.64 Aligned_cols=389 Identities=24% Similarity=0.277 Sum_probs=287.5
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccCC--------------CC--------------------------CCEEEc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQL--------------QN--------------------------LEELLL 40 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l--------------~~--------------------------L~~L~l 40 (628)
|++++|.++++.|..|.++++|+.|+++++++ ++ |++|+|
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 46777777777777777665554444444321 33 445555
Q ss_pred cCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCC--CCccc--ccccCCCCCcEEE
Q 037488 41 WGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTP--KLNFL--SSLSNCKYLKYFS 116 (628)
Q Consensus 41 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~--~~~~~l~~L~~L~ 116 (628)
++|.+++..|..|..+++|+.|++++|++.++.|.+|.++++|+.|++++|....... .++.+ ..+..+++|++|+
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 5555544444445555555555555555555444455555555555554443221000 00000 1466778888888
Q ss_pred cccCCCCCCCchHHhccccccceeeccCCcccc--cCCccccCC--CCCCEEEccCCcCCccccccccCCCCCCEeeccc
Q 037488 117 FSNNSLDGILPRAIGNLSQSMEIFWMHSCNISG--GIPEEISNL--TNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEY 192 (628)
Q Consensus 117 l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~--~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 192 (628)
+++|.+.++.+..|..++ .|+.+++++|.+.. ..+..|..+ ++|+.|++++|++.+..|..+..+++|++|++++
T Consensus 336 l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp CCSCCBCCCCTTTTTTCT-TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCCccCCCChhHhcccc-CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 888888887777777775 68888888776432 222333333 5788888888999888888899999999999999
Q ss_pred CcccccCC-ccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCC---cCCCCccCCCCCcEEEcCCCCCcC
Q 037488 193 NQLEGSIP-DDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT---SIPSTLLNLKDILYLNLSSNFFTG 268 (628)
Q Consensus 193 n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~l~~n~l~~ 268 (628)
|++.+.+| ..+.++++|++|++++|++.+..+..|..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence 99987655 67889999999999999999888889999999999999999886 468888899999999999999998
Q ss_pred CCCCcccCCccccEEEcCCCcCCCCCc--------cccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccc
Q 037488 269 PLPLEIGNLKVLIKIDLSMNNFSGVIP--------ITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSG 340 (628)
Q Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 340 (628)
..+..|.++++|+.|++++|++++..+ ..+..+++|++|++++|+++...+..|.++++|+.|++++|++++
T Consensus 495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 574 (680)
T 1ziw_A 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc
Confidence 888889999999999999999986532 237889999999999999996666679999999999999999998
Q ss_pred cCchhhhcCCCCCEEEccCCcceecCCCCC--cccccccccccCCCcccCCC
Q 037488 341 IIPISLEKLLDLKDINVSFNKLEGEIPREG--SFRNFLAESFKGNELLCGMP 390 (628)
Q Consensus 341 ~~~~~~~~l~~L~~l~l~~N~l~~~~p~~~--~~~~~~~~~~~~~~~~~~~~ 390 (628)
+.+..|..+++|+.|++++|++++..+... .+..+....+.+|+..|..+
T Consensus 575 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 888888999999999999999987665422 35567778888999998754
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=363.39 Aligned_cols=361 Identities=24% Similarity=0.221 Sum_probs=283.6
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccC-----------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSF 69 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 69 (628)
|+|++|.|+++.+..|.++++|++|++++|+ +++|++|+|++|.++++.+..|.++++|++|+|++|++
T Consensus 30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence 5899999999999899999999999999986 56799999999999987777899999999999999999
Q ss_pred cccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhcc-ccccceeeccCCccc
Q 037488 70 YGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNL-SQSMEIFWMHSCNIS 148 (628)
Q Consensus 70 ~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l-~~~l~~l~l~~n~~~ 148 (628)
+++.|.+|+++++|++|++++|.++...+ ..+.++++|++|++++|.+++..+..+..+ ...|+.|++++|.+.
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKL-----GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CCCCSCTTTTCTTCCEEECCSSCCSCCCC-----CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CccChhHccccCCCCEEECCCCcccccCc-----hhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999999999999999999999987654 357889999999999999998888777543 147999999999998
Q ss_pred ccCCccccCC---------------------------CCCCEEEccCCcCCccccccccCCCC--CCEeecccCcccccC
Q 037488 149 GGIPEEISNL---------------------------TNLIAIYLGGNKLNGSIPIALGKLQK--LQLLNLEYNQLEGSI 199 (628)
Q Consensus 149 ~~~~~~~~~l---------------------------~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~L~~n~l~~~~ 199 (628)
+..|..+..+ ++|+.|++++|.+.+..|..+..++. |++|++++|++.+..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 8877766544 56777888888888777777877755 999999999988888
Q ss_pred CccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCC------cCCC----CccCCCCCcEEEcCCCCCcCC
Q 037488 200 PDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT------SIPS----TLLNLKDILYLNLSSNFFTGP 269 (628)
Q Consensus 200 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------~lp~----~~~~l~~L~~L~l~~n~l~~~ 269 (628)
|..|..+++|++|++++|.+.+..|..|..+++|+.|++++|... .+|. .+..+++|++|++++|.+++.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 888888999999999999998888888888888888888876543 3443 566778888888888888887
Q ss_pred CCCcccCCccccEEEcCCCcCCCC--CccccCCC--CCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCc-h
Q 037488 270 LPLEIGNLKVLIKIDLSMNNFSGV--IPITIGYL--KDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIP-I 344 (628)
Q Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~ 344 (628)
.+..|.++++|++|++++|.+... .+..+..+ ++|+.|++++|++++..|..|..+++|+.|++++|.+.+.+| .
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence 777788888888888877764321 11222222 356666666666666666666666666666666666655333 4
Q ss_pred hhhcCCCCCEEEccCCcceecC
Q 037488 345 SLEKLLDLKDINVSFNKLEGEI 366 (628)
Q Consensus 345 ~~~~l~~L~~l~l~~N~l~~~~ 366 (628)
.+..+++|+.|++++|++.+..
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEECC
T ss_pred cccCcccccEEecCCCCcceeC
Confidence 5666666666666666665443
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=367.16 Aligned_cols=364 Identities=21% Similarity=0.207 Sum_probs=297.4
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccC-----------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSF 69 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 69 (628)
|+|++|.++++.|..|.++++|++|++++|+ +++|++|+|++|.+++..+..|.++++|++|++++|.+
T Consensus 61 L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 140 (606)
T 3vq2_A 61 LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140 (606)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCC
T ss_pred EeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcc
Confidence 5899999999999999999999999999986 56799999999999988888899999999999999999
Q ss_pred ccc-CccccCCCCCCCEEEccCccccCCCCCC-cccc---------------------cccCCCCCcEEEcccCCCCC-C
Q 037488 70 YGF-IPNTFGNLRNLNRLGLNDNYLTSSTPKL-NFLS---------------------SLSNCKYLKYFSFSNNSLDG-I 125 (628)
Q Consensus 70 ~~~-~~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~~---------------------~~~~l~~L~~L~l~~n~l~~-~ 125 (628)
.++ +|..|+++++|++|++++|.++.+++.. ..+. ......+|++|++++|.+.+ .
T Consensus 141 ~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~ 220 (606)
T 3vq2_A 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNI 220 (606)
T ss_dssp CCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHH
T ss_pred cceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhH
Confidence 874 4889999999999999999988765421 0000 01112255556655554431 0
Q ss_pred Cch-----------------------------------------------------------------------------
Q 037488 126 LPR----------------------------------------------------------------------------- 128 (628)
Q Consensus 126 ~p~----------------------------------------------------------------------------- 128 (628)
.|.
T Consensus 221 ~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 300 (606)
T 3vq2_A 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300 (606)
T ss_dssp HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCC
T ss_pred HHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhh
Confidence 000
Q ss_pred -HHhccccccceeeccCCcccccCC--------------------ccccCCCCCCEEEccCCcCCcc--ccccccCCCCC
Q 037488 129 -AIGNLSQSMEIFWMHSCNISGGIP--------------------EEISNLTNLIAIYLGGNKLNGS--IPIALGKLQKL 185 (628)
Q Consensus 129 -~~~~l~~~l~~l~l~~n~~~~~~~--------------------~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L 185 (628)
.+..+ ..++.|++++|.+ +.+| ..+..+++|+.|++++|.+++. .|..+..+++|
T Consensus 301 ~~l~~~-~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 378 (606)
T 3vq2_A 301 EDVPKH-FKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378 (606)
T ss_dssp CCCCTT-CCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred hhcccc-ccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence 01111 1345555555555 2333 1355677888888888888765 37788999999
Q ss_pred CEeecccCcccccCCccccCCCCCCEEEccCCcCcccCC-CCccCCCCCcEEEccCCcCCc-CCCCccCCCCCcEEEcCC
Q 037488 186 QLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVP-ASFGNLTNLRSLHLGSNQITS-IPSTLLNLKDILYLNLSS 263 (628)
Q Consensus 186 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~ 263 (628)
++|++++|.+.+ +|..+..+++|+.|++++|++.+..| ..+..+++|+.|++++|.++. .|..+..+++|++|++++
T Consensus 379 ~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 379 RHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp CEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred cEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence 999999999985 56889999999999999999998877 689999999999999999987 567788999999999999
Q ss_pred CCCcC-CCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccC
Q 037488 264 NFFTG-PLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGII 342 (628)
Q Consensus 264 n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 342 (628)
|.+++ .+|..++.+++|+.|++++|++++..|..++.+++|++|++++|++++..|..+..+++|+.|++++|+++. +
T Consensus 458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~ 536 (606)
T 3vq2_A 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-S 536 (606)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-E
T ss_pred CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-c
Confidence 99987 478899999999999999999999999999999999999999999999889999999999999999999995 4
Q ss_pred chhhhcCC-CCCEEEccCCcceecCCC
Q 037488 343 PISLEKLL-DLKDINVSFNKLEGEIPR 368 (628)
Q Consensus 343 ~~~~~~l~-~L~~l~l~~N~l~~~~p~ 368 (628)
|..+..++ +|+.+++++|++.+.++.
T Consensus 537 p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 537 KGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp ESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CHhHhhhcccCcEEEccCCCcccCCcc
Confidence 55588887 599999999999987663
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=361.56 Aligned_cols=372 Identities=22% Similarity=0.242 Sum_probs=221.4
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccC-----------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSF 69 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 69 (628)
|+|++|+|+++.|..|.++++|++|++++|+ +++|++|+|++|.+++..|..|.++++|++|+|++|++
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 110 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCC
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcc
Confidence 4566666666666666667777777766664 34566677777766666555666666677777776666
Q ss_pred ccc-CccccCCCCCCCEEEccCcc-ccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcc
Q 037488 70 YGF-IPNTFGNLRNLNRLGLNDNY-LTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNI 147 (628)
Q Consensus 70 ~~~-~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~ 147 (628)
+++ .|..|+++++|++|++++|. +..+++ ..+.++++|++|++++|.+++..|..+..+. .++.|+++.|.+
T Consensus 111 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~ 184 (549)
T 2z81_A 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-----IDFAGLTSLNELEIKALSLRNYQSQSLKSIR-DIHHLTLHLSES 184 (549)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSSCCEECT-----TTTTTCCEEEEEEEEETTCCEECTTTTTTCS-EEEEEEEECSBS
T ss_pred cccchhhhhhccCCccEEECCCCccccccCH-----hhhhcccccCeeeccCCcccccChhhhhccc-cCceEecccCcc
Confidence 653 34566666667777666665 333221 2356666666677766666665555554443 233333333332
Q ss_pred cccCCccccCCCCCCEEEccCCcCCccc--cc-----------------------------c------------------
Q 037488 148 SGGIPEEISNLTNLIAIYLGGNKLNGSI--PI-----------------------------A------------------ 178 (628)
Q Consensus 148 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~-----------------------------~------------------ 178 (628)
....+..+..+++|+.|++++|++.+.. |. .
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 2111111123444444444444443310 00 0
Q ss_pred -----------------------------------------ccCCCCCCEeecccCcccccCCccc-cCCCCCCEEEccC
Q 037488 179 -----------------------------------------LGKLQKLQLLNLEYNQLEGSIPDDL-CRLAALFQLDLGS 216 (628)
Q Consensus 179 -----------------------------------------~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~ 216 (628)
+..+.+|+.|++++|++. .+|..+ .++++|++|++++
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccC
Confidence 001123444555555544 344443 4577788888888
Q ss_pred CcCcccCC---CCccCCCCCcEEEccCCcCCcCCC---CccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcC
Q 037488 217 NKLSGFVP---ASFGNLTNLRSLHLGSNQITSIPS---TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNF 290 (628)
Q Consensus 217 n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~lp~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (628)
|++.+..| ..++.+++|+.|++++|+++.+|. .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCc
Confidence 88776543 346677788888888888777652 3666777888888888777 4566677777788888888877
Q ss_pred CCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCC-
Q 037488 291 SGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPRE- 369 (628)
Q Consensus 291 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~- 369 (628)
+.. |..+ .++|++|++++|++++.+ ..+++|+.|++++|+++.+ |. ...+++|+.|++++|++++.+|..
T Consensus 423 ~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~i-p~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 423 RVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTL-PD-ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp SCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSC-CC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred ccc-cchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCcC-CC-cccCccCCEEecCCCccCCcCHHHH
Confidence 643 3322 256777777777776532 3566777777777777643 33 345677777777777777655542
Q ss_pred CcccccccccccCCCcccCC
Q 037488 370 GSFRNFLAESFKGNELLCGM 389 (628)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~ 389 (628)
..+..+....+.+|+..|..
T Consensus 494 ~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 494 DRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp GGCTTCCEEECCSSCBCCCH
T ss_pred hcCcccCEEEecCCCccCCC
Confidence 33455556666677766653
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-40 Score=349.02 Aligned_cols=366 Identities=20% Similarity=0.207 Sum_probs=300.1
Q ss_pred cccCCCcccCCChhccCCCCCCEEecCccC-----------CCCCCEEEccCCcce-ecCCccccCCCCCCEEeccCCcc
Q 037488 2 AFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFS-GTIPSFIFNASKLSRLELQMNSF 69 (628)
Q Consensus 2 ~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l 69 (628)
+.+++.++.+ |. + .++|++|++++|+ +++|++|+|++|.+. .+.+..|.++++|++|+|++|++
T Consensus 16 ~c~~~~l~~l-p~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 16 ICINRGLHQV-PE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp ECCSSCCSSC-CC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred CcCCCCcccC-CC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 3455666643 33 2 2678888888875 457888888888886 44567789999999999999999
Q ss_pred cccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchH-HhccccccceeeccCCccc
Q 037488 70 YGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRA-IGNLSQSMEIFWMHSCNIS 148 (628)
Q Consensus 70 ~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~~l~~l~l~~n~~~ 148 (628)
+++.|..|+++++|++|++++|.++...+. ...+.++++|++|++++|.+++..|.. +..++ .|+.|++++|.+.
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~ 167 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLS---GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR-RFHVLDLTFNKVK 167 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHH---SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT-TCCEEECTTCCBS
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccC---cccccCcccCCEEECCCCccCccCcccccCCCC-cccEEeCCCCccc
Confidence 998899999999999999999988752110 123778899999999999999887776 66665 7999999999999
Q ss_pred ccCCccccCC--CCCCEEEccCCcCCcccccc--------ccCCCCCCEeecccCcccccCCccccCC---CCCCEEEcc
Q 037488 149 GGIPEEISNL--TNLIAIYLGGNKLNGSIPIA--------LGKLQKLQLLNLEYNQLEGSIPDDLCRL---AALFQLDLG 215 (628)
Q Consensus 149 ~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~--------~~~l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~L~ 215 (628)
+..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|++.+..|..+... ++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 8888888776 68899999999988655433 3366889999999999988777766543 788999999
Q ss_pred CCcCccc----------CCCCccC--CCCCcEEEccCCcCCcC-CCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccE
Q 037488 216 SNKLSGF----------VPASFGN--LTNLRSLHLGSNQITSI-PSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIK 282 (628)
Q Consensus 216 ~n~l~~~----------~~~~~~~--l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 282 (628)
+|.+.+. .+..+.. .++|+.|++++|.++++ |..+..+++|++|++++|.+++..|..|..+++|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 8865432 1222332 36899999999999975 667888999999999999999988999999999999
Q ss_pred EEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcc
Q 037488 283 IDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKL 362 (628)
Q Consensus 283 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l 362 (628)
|+|++|.+++..|..++.+++|++|++++|++++..|..+..+++|+.|++++|+++++.+..+..+++|+.|++++|++
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 99999999988899999999999999999999988899999999999999999999988888889999999999999999
Q ss_pred eecCCCCCccccc
Q 037488 363 EGEIPREGSFRNF 375 (628)
Q Consensus 363 ~~~~p~~~~~~~~ 375 (628)
++.+|....+..|
T Consensus 408 ~~~~~~~~~l~~~ 420 (455)
T 3v47_A 408 DCSCPRIDYLSRW 420 (455)
T ss_dssp CCCTTTTHHHHHH
T ss_pred ccCCCcchHHHHH
Confidence 9999865444333
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=369.63 Aligned_cols=348 Identities=20% Similarity=0.267 Sum_probs=299.2
Q ss_pred cCCCcccCCChhccCCCCCCEEecCccC------------------------------CCCCCEEEccCCcceecCCccc
Q 037488 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQ------------------------------LQNLEELLLWGNNFSGTIPSFI 53 (628)
Q Consensus 4 s~N~l~~~~p~~~~~l~~L~~L~l~~n~------------------------------l~~L~~L~ls~N~l~~~~p~~~ 53 (628)
+.|+|++ +|..|+++++|+.|+|++|+ +++|++|+|++|.+.+.+|..|
T Consensus 433 ~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l 511 (876)
T 4ecn_A 433 LTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511 (876)
T ss_dssp CSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG
T ss_pred ccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH
Confidence 3588998 78899999999999999885 4558999999999999999999
Q ss_pred cCCCCCCEEeccCCc-ccc-cCccccCCC-------CCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCC
Q 037488 54 FNASKLSRLELQMNS-FYG-FIPNTFGNL-------RNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDG 124 (628)
Q Consensus 54 ~~l~~L~~L~L~~N~-l~~-~~~~~f~~l-------~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 124 (628)
.++++|+.|+|++|+ +++ .+|..|+++ ++|+.|+|++|.++.++. ...+.++++|++|+|++|.++
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~----~~~l~~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA----SASLQKMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC----HHHHTTCTTCCEEECTTSCCC-
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC----hhhhhcCCCCCEEECCCCCcc-
Confidence 999999999999998 887 667655544 599999999999986542 015789999999999999999
Q ss_pred CCchHHhccccccceeeccCCcccccCCccccCCCC-CCEEEccCCcCCccccccccCCCC--CCEeecccCcccccCCc
Q 037488 125 ILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTN-LIAIYLGGNKLNGSIPIALGKLQK--LQLLNLEYNQLEGSIPD 201 (628)
Q Consensus 125 ~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~L~~n~l~~~~p~ 201 (628)
.+| .|+.++ .|+.|++++|.+. .+|..+..+++ |+.|+|++|.+. .+|..+..++. |+.|+|++|++.+.+|.
T Consensus 587 ~lp-~~~~L~-~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 587 HLE-AFGTNV-KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp BCC-CCCTTS-EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred cch-hhcCCC-cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 666 777775 7999999999999 78888999999 999999999998 77888877655 99999999999877663
Q ss_pred cc---c--CCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCC--------CCcEEEcCCCCCcC
Q 037488 202 DL---C--RLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLK--------DILYLNLSSNFFTG 268 (628)
Q Consensus 202 ~~---~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~--------~L~~L~l~~n~l~~ 268 (628)
.. . .+++|+.|+|++|+++...+..+..+++|+.|+|++|+++.+|..++... +|++|+|++|.++
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~- 741 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT- 741 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-
Confidence 32 2 34589999999999996544455689999999999999999998776533 8999999999999
Q ss_pred CCCCccc--CCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCC------CcCcccCChhhcCCCCCCEEECcCCcccc
Q 037488 269 PLPLEIG--NLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEY------NRLQGSIPDSIGDLINLKSLDLSNNNLSG 340 (628)
Q Consensus 269 ~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~------n~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 340 (628)
.+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|++++|.+ +
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~ 819 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-R 819 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-C
Confidence 5677776 99999999999999997 688889999999999976 788889999999999999999999999 5
Q ss_pred cCchhhhcCCCCCEEEccCCcceecC
Q 037488 341 IIPISLEKLLDLKDINVSFNKLEGEI 366 (628)
Q Consensus 341 ~~~~~~~~l~~L~~l~l~~N~l~~~~ 366 (628)
.+|..+. ++|+.|++++|++...-
T Consensus 820 ~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 820 KVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp BCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred ccCHhhc--CCCCEEECCCCCCCccC
Confidence 6666654 69999999999987543
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=350.77 Aligned_cols=365 Identities=19% Similarity=0.242 Sum_probs=191.4
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccC-----------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSF 69 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 69 (628)
||+|+|+|+. +|..+. ++|++|++++|+ +++|++|+|++|.+++..|..|.++++|++|+|++|++
T Consensus 5 l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 5 VDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp EECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred EecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 4677777775 444444 777777777775 45677777777777777777777777777777777777
Q ss_pred cccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhcccccc--ceeeccCCcc
Q 037488 70 YGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSM--EIFWMHSCNI 147 (628)
Q Consensus 70 ~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l--~~l~l~~n~~ 147 (628)
+.+.+. .+++|++|++++|.++.++ .+..+.++++|++|++++|.+++ ..+..+. .+ +.+++++|.+
T Consensus 82 ~~lp~~---~l~~L~~L~L~~N~l~~~~----~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~-~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 82 VKISCH---PTVNLKHLDLSFNAFDALP----ICKEFGNMSQLKFLGLSTTHLEK---SSVLPIA-HLNISKVLLVLGET 150 (520)
T ss_dssp CEEECC---CCCCCSEEECCSSCCSSCC----CCGGGGGCTTCCEEEEEESSCCG---GGGGGGT-TSCEEEEEEEECTT
T ss_pred eecCcc---ccCCccEEeccCCcccccc----chhhhccCCcceEEEecCcccch---hhccccc-cceeeEEEeecccc
Confidence 764333 6777777777777776542 12356667777777777777654 2333332 34 6666666665
Q ss_pred --cccCCccccCC--------------------------C----------------------------------------
Q 037488 148 --SGGIPEEISNL--------------------------T---------------------------------------- 159 (628)
Q Consensus 148 --~~~~~~~~~~l--------------------------~---------------------------------------- 159 (628)
.+..|..+..+ +
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccc
Confidence 44444433332 2
Q ss_pred -----------------CCCEEEccCCcCCccccccc-----cCCCCCCEeecccCcccccCC-ccccCC---CCCCEEE
Q 037488 160 -----------------NLIAIYLGGNKLNGSIPIAL-----GKLQKLQLLNLEYNQLEGSIP-DDLCRL---AALFQLD 213 (628)
Q Consensus 160 -----------------~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~~p-~~~~~l---~~L~~L~ 213 (628)
+|+.|++++|++.+.+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|+
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence 34444444444444444444 4444444444444444 122 111111 2233333
Q ss_pred ccCCcCcccCCCCccCCCCCcEEEccCCcCCc-CCCCccCCCCCcEEEcCCCCCcC--CCCCcccCCccccEEEcCCCcC
Q 037488 214 LGSNKLSGFVPASFGNLTNLRSLHLGSNQITS-IPSTLLNLKDILYLNLSSNFFTG--PLPLEIGNLKVLIKIDLSMNNF 290 (628)
Q Consensus 214 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l 290 (628)
+++|.+.... .+..+++|++|++++|++++ +|..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+
T Consensus 309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence 3333332111 11344555555555555554 44445555555555555555553 2233455555555555555555
Q ss_pred CCCCcc-ccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCC
Q 037488 291 SGVIPI-TIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPRE 369 (628)
Q Consensus 291 ~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~ 369 (628)
++.+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|++++ +|..
T Consensus 387 ~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~ 462 (520)
T 2z7x_B 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDG 462 (520)
T ss_dssp BCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTT
T ss_pred CcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHH
Confidence 542332 244455555555555555444443332 45555555555555 233333355555555555555552 2221
Q ss_pred --CcccccccccccCCCccc
Q 037488 370 --GSFRNFLAESFKGNELLC 387 (628)
Q Consensus 370 --~~~~~~~~~~~~~~~~~~ 387 (628)
..+..+....+.+|+..|
T Consensus 463 ~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TTTTCTTCCEEECCSSCBCC
T ss_pred HhccCCcccEEECcCCCCcc
Confidence 123334444444555444
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=356.41 Aligned_cols=359 Identities=22% Similarity=0.283 Sum_probs=291.4
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccC-----------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSF 69 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 69 (628)
|+|++|+++++.|..|.++++|++|++++|+ +++|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus 57 L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 136 (570)
T 2z63_A 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136 (570)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCcc
Confidence 5899999999999999999999999999985 46799999999999877777799999999999999999
Q ss_pred ccc-CccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCC----cEEEcccCCCCCCCc-----------------
Q 037488 70 YGF-IPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYL----KYFSFSNNSLDGILP----------------- 127 (628)
Q Consensus 70 ~~~-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L----~~L~l~~n~l~~~~p----------------- 127 (628)
+++ .|..|+++++|+.|++++|.++..++. .+..+++| +.|++++|.+.++.|
T Consensus 137 ~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 211 (570)
T 2z63_A 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-----DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211 (570)
T ss_dssp CCCCCCGGGGGCTTCCEEECTTSCCCEECGG-----GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred ceecChhhhcccCCCCEEeCcCCccceecHH-----HccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccc
Confidence 875 488999999999999999988765421 22233333 344444444433322
Q ss_pred ----------------------------------------------------------------hHHhccccccceeecc
Q 037488 128 ----------------------------------------------------------------RAIGNLSQSMEIFWMH 143 (628)
Q Consensus 128 ----------------------------------------------------------------~~~~~l~~~l~~l~l~ 143 (628)
..+..++ .++.++++
T Consensus 212 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~-~L~~L~l~ 290 (570)
T 2z63_A 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT-NVSSFSLV 290 (570)
T ss_dssp SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT-TCSEEEEE
T ss_pred ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC-cccEEEec
Confidence 2222222 45566666
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCC---------------------ccccccccCCCCCCEeecccCcccccC--C
Q 037488 144 SCNISGGIPEEISNLTNLIAIYLGGNKLN---------------------GSIPIALGKLQKLQLLNLEYNQLEGSI--P 200 (628)
Q Consensus 144 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~---------------------~~~p~~~~~l~~L~~L~L~~n~l~~~~--p 200 (628)
+|.+. .+|..+..+ +|+.|++++|.+. +..+. ..+++|++|++++|++.+.. |
T Consensus 291 ~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~ 366 (570)
T 2z63_A 291 SVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCS 366 (570)
T ss_dssp SCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEE
T ss_pred Cccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccc
Confidence 66665 355555555 5555555555554 32222 57789999999999988654 6
Q ss_pred ccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCC--CccCCCCCcEEEcCCCCCcCCCCCcccCCc
Q 037488 201 DDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS--TLLNLKDILYLNLSSNFFTGPLPLEIGNLK 278 (628)
Q Consensus 201 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 278 (628)
..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+..++. .+..+++|++|++++|.+++..|..+..++
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred ccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence 7788999999999999999876655 9999999999999999988643 677899999999999999999999999999
Q ss_pred cccEEEcCCCcCC-CCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEc
Q 037488 279 VLIKIDLSMNNFS-GVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINV 357 (628)
Q Consensus 279 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l 357 (628)
+|+.|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++
T Consensus 446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 9999999999997 578899999999999999999999888999999999999999999999998888999999999999
Q ss_pred cCCcceecCCCCC
Q 037488 358 SFNKLEGEIPREG 370 (628)
Q Consensus 358 ~~N~l~~~~p~~~ 370 (628)
++|++++.+|...
T Consensus 526 ~~N~~~~~~~~~~ 538 (570)
T 2z63_A 526 HTNPWDCSCPRID 538 (570)
T ss_dssp CSSCBCCCTTTTH
T ss_pred cCCcccCCCcchH
Confidence 9999999988643
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=347.49 Aligned_cols=350 Identities=17% Similarity=0.204 Sum_probs=230.9
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccC-----------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSF 69 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 69 (628)
+|+++|++++ +|..+. ++|+.|++++|+ +++|++|+|++|.++++.|..|.++++|++|+|++|++
T Consensus 36 l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 36 VDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp EECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC
Confidence 4788999997 554553 788888888886 45788888888888888888888888888888888888
Q ss_pred cccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcc--
Q 037488 70 YGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNI-- 147 (628)
Q Consensus 70 ~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~-- 147 (628)
+.+.+. .+++|++|++++|+++.++. +..+.++++|++|++++|.+++.....+..+ .++.+++++|.+
T Consensus 113 ~~lp~~---~l~~L~~L~Ls~N~l~~l~~----p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L--~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 113 QNISCC---PMASLRHLDLSFNDFDVLPV----CKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL--HLSCILLDLVSYHI 183 (562)
T ss_dssp CEECSC---CCTTCSEEECCSSCCSBCCC----CGGGGGCTTCCEEEEECSBCCTTTTGGGTTS--CEEEEEEEESSCCC
T ss_pred CccCcc---ccccCCEEECCCCCccccCc----hHhhcccCcccEEecCCCccccCchhhhhhc--eeeEEEeecccccc
Confidence 875443 78888888888888877542 2457788888888888888876332222222 248888888888
Q ss_pred cccCCccccCCC--------------------------------------------------------------------
Q 037488 148 SGGIPEEISNLT-------------------------------------------------------------------- 159 (628)
Q Consensus 148 ~~~~~~~~~~l~-------------------------------------------------------------------- 159 (628)
++..|..+..+.
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 666665555433
Q ss_pred -------------CCCEEEccCCcCCccccccc-----cCCCC--------------------------CCEeecccCcc
Q 037488 160 -------------NLIAIYLGGNKLNGSIPIAL-----GKLQK--------------------------LQLLNLEYNQL 195 (628)
Q Consensus 160 -------------~L~~L~L~~n~l~~~~p~~~-----~~l~~--------------------------L~~L~L~~n~l 195 (628)
+|+.|++++|.+.+.+|..+ ..++. |+.|++++|.+
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 34444444444444444433 22221 33333333333
Q ss_pred cccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCC---CCccCCCCCcEEEcCCCCCcC-CCC
Q 037488 196 EGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP---STLLNLKDILYLNLSSNFFTG-PLP 271 (628)
Q Consensus 196 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp---~~~~~l~~L~~L~l~~n~l~~-~~~ 271 (628)
.... ....+++|++|++++|++++..|..+..+++|+.|++++|++++++ ..+..+++|++|++++|.+++ .++
T Consensus 344 ~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 344 IHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp CCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred cccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence 2110 0145667777777777777666667777777777777777777654 345667777777777777766 333
Q ss_pred CcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCC
Q 037488 272 LEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLD 351 (628)
Q Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 351 (628)
..+..+++|+.|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++++.+..+..+++
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTS 498 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTT
T ss_pred hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCC
Confidence 4466677777777777777665554433 56777777777776 45555557777777777777777544444667777
Q ss_pred CCEEEccCCcceecCC
Q 037488 352 LKDINVSFNKLEGEIP 367 (628)
Q Consensus 352 L~~l~l~~N~l~~~~p 367 (628)
|+.|++++|++.+.++
T Consensus 499 L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 499 LQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCCEECCSCCBCCCHH
T ss_pred CCEEEecCCCcCCCcc
Confidence 7777777777766544
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-39 Score=340.27 Aligned_cols=353 Identities=20% Similarity=0.172 Sum_probs=305.1
Q ss_pred CCCCEEEccCCcceecCCccccCCCCCCEEeccCCccc-ccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCC
Q 037488 33 QNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFY-GFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKY 111 (628)
Q Consensus 33 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~ 111 (628)
++|++|+|++|.+++..|..|.++++|++|+|++|.+. .+.+.+|.++++|++|+|++|.++...+ ..+.++++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-----GAFNGLAN 104 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-----TTTTTCTT
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-----hhccCccc
Confidence 57999999999999999999999999999999999997 4557889999999999999999987644 35889999
Q ss_pred CcEEEcccCCCCCCCchH--HhccccccceeeccCCcccccCCcc-ccCCCCCCEEEccCCcCCccccccccCC--CCCC
Q 037488 112 LKYFSFSNNSLDGILPRA--IGNLSQSMEIFWMHSCNISGGIPEE-ISNLTNLIAIYLGGNKLNGSIPIALGKL--QKLQ 186 (628)
Q Consensus 112 L~~L~l~~n~l~~~~p~~--~~~l~~~l~~l~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l--~~L~ 186 (628)
|++|++++|.+++..+.. |..++ .|+.|++++|.+.+..|.. +.++++|+.|++++|.+.+..|..+..+ .+|+
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLT-SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCT-TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcc-cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 999999999998755544 77775 7999999999999887876 8999999999999999998888888766 7899
Q ss_pred EeecccCcccccCCcc--------ccCCCCCCEEEccCCcCcccCCCCccCC---CCCcEEEccCCcCCcCC--------
Q 037488 187 LLNLEYNQLEGSIPDD--------LCRLAALFQLDLGSNKLSGFVPASFGNL---TNLRSLHLGSNQITSIP-------- 247 (628)
Q Consensus 187 ~L~L~~n~l~~~~p~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~lp-------- 247 (628)
.|++++|.+.+..+.. +..+++|++|++++|++++..|..+... ++|+.|++++|.+....
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 9999999998655433 3366899999999999988777666544 78999999988654321
Q ss_pred ---CCcc--CCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhh
Q 037488 248 ---STLL--NLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSI 322 (628)
Q Consensus 248 ---~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 322 (628)
..+. ..++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..++.+++|++|++++|++++..|..+
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 1111 23689999999999999999999999999999999999999889999999999999999999998889999
Q ss_pred cCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCC-CcccccccccccCCCcccCCCC
Q 037488 323 GDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPRE-GSFRNFLAESFKGNELLCGMPN 391 (628)
Q Consensus 323 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~ 391 (628)
..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+.. .....+....+.+|+..|..|.
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999999999999999998999999999999999999999755543 3456777888889998887654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=347.62 Aligned_cols=367 Identities=21% Similarity=0.239 Sum_probs=296.0
Q ss_pred cccCCCcccCCChhccCCCCCCEEecCccC-----------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCccc
Q 037488 2 AFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFY 70 (628)
Q Consensus 2 ~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 70 (628)
|.++|.++.+++ .+. ++|++|++++|+ +++|++|+|++|.+++..|..|.++++|++|+|++|+++
T Consensus 11 ~~~~~~l~~ip~-~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 11 DGRSRSFTSIPS-GLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp ECTTSCCSSCCS-CCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ECCCCccccccc-cCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 567888986554 443 799999999986 567999999999999999999999999999999999999
Q ss_pred ccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCC-CCCCCchHHhccccccceeeccCCcccc
Q 037488 71 GFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNS-LDGILPRAIGNLSQSMEIFWMHSCNISG 149 (628)
Q Consensus 71 ~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~~l~~l~l~~n~~~~ 149 (628)
++.+.+|+++++|++|++++|.++.... ...+.++++|++|++++|. +..+.+..|..++ .|+.|++++|.+.+
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGV----TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT-SLNELEIKALSLRN 162 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCS----SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEEETTCCE
T ss_pred ccCHHHhccCCCCcEEECCCCcccccch----hhhhhccCCccEEECCCCccccccCHhhhhccc-ccCeeeccCCcccc
Confidence 9999899999999999999999986431 2358899999999999998 4544556788876 79999999999999
Q ss_pred cCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccC--Ccc-ccC---------------------
Q 037488 150 GIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSI--PDD-LCR--------------------- 205 (628)
Q Consensus 150 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--p~~-~~~--------------------- 205 (628)
..|..+..+++|+.|++++|.+....+..+..+++|++|++++|++.+.. |.. ...
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 242 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence 99999999999999999999987443333467899999999999987631 100 001
Q ss_pred ------------------------------------------------------------------CCCCCEEEccCCcC
Q 037488 206 ------------------------------------------------------------------LAALFQLDLGSNKL 219 (628)
Q Consensus 206 ------------------------------------------------------------------l~~L~~L~L~~n~l 219 (628)
..+|+.|++++|++
T Consensus 243 l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l 322 (549)
T 2z81_A 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322 (549)
T ss_dssp HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC
T ss_pred HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc
Confidence 12455555555555
Q ss_pred cccCCCCc-cCCCCCcEEEccCCcCCc-CC---CCccCCCCCcEEEcCCCCCcCCCC--CcccCCccccEEEcCCCcCCC
Q 037488 220 SGFVPASF-GNLTNLRSLHLGSNQITS-IP---STLLNLKDILYLNLSSNFFTGPLP--LEIGNLKVLIKIDLSMNNFSG 292 (628)
Q Consensus 220 ~~~~~~~~-~~l~~L~~L~L~~n~l~~-lp---~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~ 292 (628)
.. +|..+ ..+++|++|++++|++++ +| ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|+++
T Consensus 323 ~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 400 (549)
T 2z81_A 323 FL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH- 400 (549)
T ss_dssp CC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-
T ss_pred cc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-
Confidence 43 34333 578999999999999986 33 346788999999999999986543 45889999999999999998
Q ss_pred CCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCCCcc
Q 037488 293 VIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSF 372 (628)
Q Consensus 293 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~ 372 (628)
.+|..+..+++|++|++++|+++ .+|..+ .++|+.|++++|++++.. ..+++|+.|++++|+++ .+|....+
T Consensus 401 ~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l 472 (549)
T 2z81_A 401 PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDASLF 472 (549)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGC
T ss_pred cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCcccC
Confidence 57888889999999999999997 445443 268999999999998754 47889999999999998 67765555
Q ss_pred cccccccccCCCcc
Q 037488 373 RNFLAESFKGNELL 386 (628)
Q Consensus 373 ~~~~~~~~~~~~~~ 386 (628)
..+......+|...
T Consensus 473 ~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 473 PVLLVMKISRNQLK 486 (549)
T ss_dssp TTCCEEECCSSCCC
T ss_pred ccCCEEecCCCccC
Confidence 66666666666443
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=359.87 Aligned_cols=375 Identities=23% Similarity=0.237 Sum_probs=272.8
Q ss_pred cccCCCcccCCChhccCCCCCCEEecCccC-----------CCCCCEEEccCCccee-cCCccccCCCCCCEEeccCCcc
Q 037488 2 AFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSG-TIPSFIFNASKLSRLELQMNSF 69 (628)
Q Consensus 2 ~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l 69 (628)
|.++++++.+++ -.++|+.|+|++|+ +++|++|+|++|.+.+ +.|..|.++++|++|+|++|++
T Consensus 10 dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 10 FYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred EccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 567889997554 46899999999996 5679999999996544 4488999999999999999999
Q ss_pred cccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCc-hHHhccccccceeeccCCccc
Q 037488 70 YGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILP-RAIGNLSQSMEIFWMHSCNIS 148 (628)
Q Consensus 70 ~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~~l~~l~l~~n~~~ 148 (628)
.++.|++|+++++|++|+|++|.++...+. ...+.++++|++|++++|.+++..+ ..|..++ .|+.|++++|.+.
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~-~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLK---DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN-SLKSIDFSSNQIF 161 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCST---TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS-SCCEEEEESSCCC
T ss_pred cccCHhHccCCcccCEeeCcCCCCCccccc---CccccccCCCCEEECCCCcccccccchhHhhCC-CCCEEECCCCcCC
Confidence 999999999999999999999999874321 1247899999999999999998765 5788886 7999999999998
Q ss_pred ccCCccccCC--CCCCEEEccCCcCCccccccccC---------------------------------------------
Q 037488 149 GGIPEEISNL--TNLIAIYLGGNKLNGSIPIALGK--------------------------------------------- 181 (628)
Q Consensus 149 ~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~--------------------------------------------- 181 (628)
+..+..+..+ ++|+.|++++|.+.+..|..++.
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 8777766554 44444444444444333222221
Q ss_pred -----------------------CCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEc
Q 037488 182 -----------------------LQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHL 238 (628)
Q Consensus 182 -----------------------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 238 (628)
.++|+.|++++|.+.+..|..|..+++|+.|+|++|++++..|..|..+++|++|+|
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 146777777777777777777778888888888888888777778888888888888
Q ss_pred cCCcCCcC-CCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCc------------------c---
Q 037488 239 GSNQITSI-PSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIP------------------I--- 296 (628)
Q Consensus 239 ~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p------------------~--- 296 (628)
++|.++.+ |..+..+++|++|++++|.+++..+..|..+++|+.|+|++|.+++... .
T Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~ 401 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL 401 (844)
T ss_dssp ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCT
T ss_pred CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccccc
Confidence 88888776 5567778888888888888887777778888888888888887764211 0
Q ss_pred -------------------ccCCCCCCCEEeCCCCcCcccC------------------------------ChhhcCCCC
Q 037488 297 -------------------TIGYLKDLQYLFLEYNRLQGSI------------------------------PDSIGDLIN 327 (628)
Q Consensus 297 -------------------~~~~l~~L~~L~l~~n~~~~~~------------------------------~~~~~~l~~ 327 (628)
.+..+++|++|++++|++++.. +..|.++++
T Consensus 402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~ 481 (844)
T 3j0a_A 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481 (844)
T ss_dssp TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred ccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccc
Confidence 1224556666666666665322 223455566
Q ss_pred CCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCCCcccccccccccCCCc
Q 037488 328 LKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNEL 385 (628)
Q Consensus 328 L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~ 385 (628)
|+.|+|++|.++++.|..|..+++|+.|++++|++++..+.... ..+....+.+|..
T Consensus 482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQL 538 (844)
T ss_dssp EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECC
T ss_pred ccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcC
Confidence 66666666666666666677777777777777777754443222 3344444444433
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=340.05 Aligned_cols=304 Identities=23% Similarity=0.206 Sum_probs=218.0
Q ss_pred CCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCc
Q 037488 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLK 113 (628)
Q Consensus 34 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~ 113 (628)
++++|+|++|.++++.|..|.++++|++|+|++|.++++.|.+|.++++|+.|+|++|.++.+++. .|.++++|+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~ 107 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG-----VFTGLSNLT 107 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT-----SSTTCTTCC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc-----cccCCCCCC
Confidence 455555555555555555555666666666666666555555566666666666666655554332 245555555
Q ss_pred EEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccC
Q 037488 114 YFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYN 193 (628)
Q Consensus 114 ~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 193 (628)
+|++++|.+. +..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|
T Consensus 108 ~L~Ls~n~i~-------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 108 KLDISENKIV-------------------------ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp EEECTTSCCC-------------------------EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred EEECCCCccc-------------------------cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 5555555554 444556667777777777777777766777777778888888888
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCC-cCCCCccCCCCCcEEEcCCCCCcCCCCC
Q 037488 194 QLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT-SIPSTLLNLKDILYLNLSSNFFTGPLPL 272 (628)
Q Consensus 194 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 272 (628)
++.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|... .+|.......+|++|++++|.++...+.
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 242 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH
T ss_pred cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH
Confidence 777665566777778888888888877777777778888888888776544 4666666666788888888888765556
Q ss_pred cccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCC
Q 037488 273 EIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDL 352 (628)
Q Consensus 273 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 352 (628)
.+..+++|+.|+|++|.+++..+..+..+++|++|+|++|++++..|..|..+++|+.|++++|.++++.+..|..+++|
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 322 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGC
T ss_pred HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCccc
Confidence 67788888888888888887777778888888888888888887778888888888888888888887777777888888
Q ss_pred CEEEccCCcceecCC
Q 037488 353 KDINVSFNKLEGEIP 367 (628)
Q Consensus 353 ~~l~l~~N~l~~~~p 367 (628)
+.|++++|++.+..+
T Consensus 323 ~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 323 ETLILDSNPLACDCR 337 (477)
T ss_dssp CEEECCSSCEECSGG
T ss_pred CEEEccCCCccCccc
Confidence 888888888876554
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=341.97 Aligned_cols=383 Identities=21% Similarity=0.263 Sum_probs=284.8
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccC-----------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSF 69 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 69 (628)
||||+|+|+++.|.+|.++++|++|+|++|+ +++|++|+|++|+++++.+..|.++++|++|+|++|++
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l 136 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence 6899999999999999999999999999996 56899999999999998889999999999999999999
Q ss_pred cccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhcccc---ccceeeccCCc
Q 037488 70 YGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQ---SMEIFWMHSCN 146 (628)
Q Consensus 70 ~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~---~l~~l~l~~n~ 146 (628)
+++.+.+|+++++|++|++++|.++.... ...+.++++|++|++++|+++++.+..|..+.. ....++++.|.
T Consensus 137 ~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 137 ASLENFPIGHLKTLKELNVAHNLIQSFKL----PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSCCCCCCC----CGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCCChhhhhcCcccCeeccccCccccCCC----chhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 99999999999999999999999987542 245788999999999999999888877654431 11122223222
Q ss_pred ccccCCc-------------------------------------------------------------------------
Q 037488 147 ISGGIPE------------------------------------------------------------------------- 153 (628)
Q Consensus 147 ~~~~~~~------------------------------------------------------------------------- 153 (628)
+....+.
T Consensus 213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 2211110
Q ss_pred ------------------------------cccCCCCCCEEEccCCcCCccccc-------------------cccCCCC
Q 037488 154 ------------------------------EISNLTNLIAIYLGGNKLNGSIPI-------------------ALGKLQK 184 (628)
Q Consensus 154 ------------------------------~~~~l~~L~~L~L~~n~l~~~~p~-------------------~~~~l~~ 184 (628)
.+....+|+.|++.+|.+....+. ....+++
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~ 372 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 372 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTT
T ss_pred ccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccc
Confidence 112223444444444444322111 1123445
Q ss_pred CCEeecccCcccc--cCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCC--CCccCCCCCcEEE
Q 037488 185 LQLLNLEYNQLEG--SIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP--STLLNLKDILYLN 260 (628)
Q Consensus 185 L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~ 260 (628)
|+.|++++|.+.. ..+..+..+.+|+.|++..|.+.. .+..+..+++|+.++++.|.....+ ..+..+.+++.++
T Consensus 373 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred cccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccc
Confidence 5555555555431 223334445555555555555443 3445667778888888777765542 3456788889999
Q ss_pred cCCCCCcCCCCCcccCCccccEEEcCCCcC-CCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCccc
Q 037488 261 LSSNFFTGPLPLEIGNLKVLIKIDLSMNNF-SGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLS 339 (628)
Q Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~ 339 (628)
++.|.+.+..+..+..++.|+.|++++|.+ .+..|..+..+++|++|+|++|++++..|..|.++++|+.|+|++|+|+
T Consensus 452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence 999998888888888899999999999874 4456788888999999999999999888889999999999999999999
Q ss_pred ccCchhhhcCCCCCEEEccCCcceecCCCCCc-c-cccccccccCCCcccC
Q 037488 340 GIIPISLEKLLDLKDINVSFNKLEGEIPREGS-F-RNFLAESFKGNELLCG 388 (628)
Q Consensus 340 ~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~~~-~-~~~~~~~~~~~~~~~~ 388 (628)
++.+..|..+++|+.|++++|++++.+|.... + ..+......+|+..|.
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 88888899999999999999999887776432 2 4566777888888885
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=336.72 Aligned_cols=347 Identities=21% Similarity=0.206 Sum_probs=269.1
Q ss_pred CEEecCccCC--------CCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCcccc
Q 037488 23 NSLYLQNVQL--------QNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLT 94 (628)
Q Consensus 23 ~~L~l~~n~l--------~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~ 94 (628)
+.|++++|++ ++|++|+|++|.+++..|..|.++++|++|+|++|+++++.|++|+++++|++|+|++|+++
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 4567777764 47999999999999888899999999999999999999999999999999999999999998
Q ss_pred CCCCCCcccccccCCCCCcEEEcccCCCCCC-CchHHhccccccceeeccCCcccccCCccccCCCCC--CEEEccCCcC
Q 037488 95 SSTPKLNFLSSLSNCKYLKYFSFSNNSLDGI-LPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNL--IAIYLGGNKL 171 (628)
Q Consensus 95 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L--~~L~L~~n~l 171 (628)
.++. . .+++|++|++++|.++++ .|..|+.++ .|+.|++++|.+.+ ..+..+++| +.|++++|.+
T Consensus 83 ~lp~-------~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~-~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 83 KISC-------H-PTVNLKHLDLSFNAFDALPICKEFGNMS-QLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp EEEC-------C-CCCCCSEEECCSSCCSSCCCCGGGGGCT-TCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred ecCc-------c-ccCCccEEeccCCccccccchhhhccCC-cceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 7543 2 789999999999999984 688999887 79999999999986 457778888 9999999998
Q ss_pred --CccccccccC--------------------------CCCCCEeecccCc-------ccccCCccccC-----------
Q 037488 172 --NGSIPIALGK--------------------------LQKLQLLNLEYNQ-------LEGSIPDDLCR----------- 205 (628)
Q Consensus 172 --~~~~p~~~~~--------------------------l~~L~~L~L~~n~-------l~~~~p~~~~~----------- 205 (628)
.+..|..+.. +++|+.|++++|. +.+.+| .+..
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence 6666655554 3344444444443 111111 1111
Q ss_pred ----------------CCCCCEEEccCCcCcccCCCCc-----cCCCCCcEEEccCCcC---------------------
Q 037488 206 ----------------LAALFQLDLGSNKLSGFVPASF-----GNLTNLRSLHLGSNQI--------------------- 243 (628)
Q Consensus 206 ----------------l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l--------------------- 243 (628)
.++|++|++++|++++.+|..+ ..+++|+.+++++|.+
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEc
Confidence 2256666666666665556555 5555555555555554
Q ss_pred -----CcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCC--CCccccCCCCCCCEEeCCCCcCcc
Q 037488 244 -----TSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSG--VIPITIGYLKDLQYLFLEYNRLQG 316 (628)
Q Consensus 244 -----~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~n~~~~ 316 (628)
..++. ...+++|++|++++|.+++..|..++.+++|+.|++++|++++ .+|..++.+++|++|++++|++++
T Consensus 310 ~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 310 SGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp ESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred CCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 33321 1578899999999999999889999999999999999999986 456778999999999999999997
Q ss_pred cCCh-hhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCC-CCcccccccccccCCCcc
Q 037488 317 SIPD-SIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPR-EGSFRNFLAESFKGNELL 386 (628)
Q Consensus 317 ~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~-~~~~~~~~~~~~~~~~~~ 386 (628)
.+|. .+..+++|+.|++++|.+++..|..+. ++|+.|++++|+++ .+|. ......+......+|...
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 4554 588899999999999999877766553 79999999999998 5554 334556666666676543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=328.21 Aligned_cols=306 Identities=24% Similarity=0.204 Sum_probs=243.4
Q ss_pred cccCCCcccCCChhccCCCCCCEEecCccC-----------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCccc
Q 037488 2 AFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFY 70 (628)
Q Consensus 2 ~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 70 (628)
+.++++++. +|..+. ++++.|+|++|+ +++|++|+|++|.++++.|..|.++++|++|+|++|+++
T Consensus 17 ~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 17 LCHRKRFVA-VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp ECCSCCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EeCCCCcCc-CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 446677775 444443 688999999986 467999999999999999999999999999999999999
Q ss_pred ccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCccccc
Q 037488 71 GFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGG 150 (628)
Q Consensus 71 ~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~ 150 (628)
.+.+..|.++++|+.|+|++|.++...+ ..+.++++|++|++++|.+.++.+
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~----------------------- 145 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLD-----YMFQDLYNLKSLEVGDNDLVYISH----------------------- 145 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEEECCTTCCEECT-----------------------
T ss_pred ccCcccccCCCCCCEEECCCCccccCCh-----hHccccccCCEEECCCCccceeCh-----------------------
Confidence 9988899999999999999999987654 357889999999999998875433
Q ss_pred CCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCC
Q 037488 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNL 230 (628)
Q Consensus 151 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 230 (628)
..|.++++|+.|++++|++++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..|......
T Consensus 146 --~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 223 (477)
T 2id5_A 146 --RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223 (477)
T ss_dssp --TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred --hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC
Confidence 345566777777777777776655667777777777777777777666677777777788777777666666555555
Q ss_pred CCCcEEEccCCcCCcCCC-CccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeC
Q 037488 231 TNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFL 309 (628)
Q Consensus 231 ~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 309 (628)
.+|+.|++++|.++.+|. .+..+++|++|++++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|++|++
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence 678888888888887774 4566778888888888887777777888888888888888888777888888888888888
Q ss_pred CCCcCcccCChhhcCCCCCCEEECcCCcccc
Q 037488 310 EYNRLQGSIPDSIGDLINLKSLDLSNNNLSG 340 (628)
Q Consensus 310 ~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 340 (628)
++|++++..+..|..+++|+.|++++|.+..
T Consensus 304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 304 SGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 8888887666777888888888888888764
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=320.23 Aligned_cols=331 Identities=30% Similarity=0.457 Sum_probs=242.1
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccC---------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ---------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYG 71 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~---------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 71 (628)
|++++|.+..+ | .+..+++|++|++++|+ +++|++|++++|.+++..+ +.++++|++|++++|.+++
T Consensus 51 L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 126 (466)
T 1o6v_A 51 LQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD 126 (466)
T ss_dssp EECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred EecCCCCCccC-c-chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC
Confidence 35666777653 3 36777777777777775 3567777777777775544 7777777777777777776
Q ss_pred cCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccC
Q 037488 72 FIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGI 151 (628)
Q Consensus 72 ~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~ 151 (628)
+.+ |.++++|++|++++|.++.++ .+.++++|++|+++ |.+.+..+ +..++ .|+.|++++|.+.+.
T Consensus 127 ~~~--~~~l~~L~~L~l~~n~l~~~~-------~~~~l~~L~~L~l~-~~~~~~~~--~~~l~-~L~~L~l~~n~l~~~- 192 (466)
T 1o6v_A 127 IDP--LKNLTNLNRLELSSNTISDIS-------ALSGLTSLQQLSFG-NQVTDLKP--LANLT-TLERLDISSNKVSDI- 192 (466)
T ss_dssp CGG--GTTCTTCSEEEEEEEEECCCG-------GGTTCTTCSEEEEE-ESCCCCGG--GTTCT-TCCEEECCSSCCCCC-
T ss_pred ChH--HcCCCCCCEEECCCCccCCCh-------hhccCCcccEeecC-CcccCchh--hccCC-CCCEEECcCCcCCCC-
Confidence 543 777777777777777776542 36677777777775 44444332 55554 678888888877653
Q ss_pred CccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCC
Q 037488 152 PEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLT 231 (628)
Q Consensus 152 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 231 (628)
+.+..+++|+.|++++|.+.+..| ++.+++|++|++++|++.+. ..+..+++|+.|++++|.+++..+ +..++
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 265 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLT 265 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred -hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCC
Confidence 347778888888888888876554 66778888888888887743 357778888888888888876544 77788
Q ss_pred CCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCC
Q 037488 232 NLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEY 311 (628)
Q Consensus 232 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 311 (628)
+|+.|++++|.++.++. +..+++|++|++++|.+++..+ +..+++|+.|++++|++++..| +..+++|++|++++
T Consensus 266 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 266 KLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340 (466)
T ss_dssp TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCS
T ss_pred CCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCC
Confidence 88888888888887765 6677888888888888876544 6778888888888888877655 56778888888888
Q ss_pred CcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceec
Q 037488 312 NRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGE 365 (628)
Q Consensus 312 n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~ 365 (628)
|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 341 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 341 NKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp SCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 888754 457788888888888888877666 67788888888888887763
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=309.19 Aligned_cols=313 Identities=19% Similarity=0.207 Sum_probs=275.7
Q ss_pred cCCCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCC
Q 037488 30 VQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNC 109 (628)
Q Consensus 30 n~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l 109 (628)
..+.+++.|++++|.+..+.+..|.++++|++|+|++|.++++.+.+|.++++|++|++++|.++.+++. .+.++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l 116 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-----VFQNV 116 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH-----HhcCC
Confidence 3478899999999999987777789999999999999999999999999999999999999999987653 47899
Q ss_pred CCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEee
Q 037488 110 KYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLN 189 (628)
Q Consensus 110 ~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 189 (628)
++|++|++++|.++.+.+..|..++ .|+.|++++|.+.+..+..|..+++|+.|++++|++++. .+..+++|+.|+
T Consensus 117 ~~L~~L~L~~n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~ 192 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN 192 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred CCCCEEECCCCccCcCCHHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceee
Confidence 9999999999999977766677775 799999999999988888999999999999999999864 366789999999
Q ss_pred cccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCC
Q 037488 190 LEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGP 269 (628)
Q Consensus 190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~ 269 (628)
+++|.+.+ +...++|+.|++++|.+...... ..++|+.|++++|.++.+ ..+..+++|++|++++|.+++.
T Consensus 193 l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 193 VSYNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp CCSSCCSE-----EECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEE
T ss_pred cccccccc-----cCCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCc
Confidence 99998874 33456899999999999876433 247899999999999987 4678899999999999999988
Q ss_pred CCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcC
Q 037488 270 LPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKL 349 (628)
Q Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 349 (628)
.|..|..+++|+.|++++|++++ +|..+..+++|++|++++|++. .+|..+..+++|+.|++++|.++... +..+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~ 338 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTH 338 (390)
T ss_dssp ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTT
T ss_pred ChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhh
Confidence 89999999999999999999985 5666678999999999999998 56777888999999999999998653 6678
Q ss_pred CCCCEEEccCCcceec
Q 037488 350 LDLKDINVSFNKLEGE 365 (628)
Q Consensus 350 ~~L~~l~l~~N~l~~~ 365 (628)
++|+.|++++|++.+.
T Consensus 339 ~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 339 HTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCCSEEECCSSCEEHH
T ss_pred ccCCEEEcCCCCccch
Confidence 8999999999999864
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=314.62 Aligned_cols=337 Identities=26% Similarity=0.409 Sum_probs=286.7
Q ss_pred cCCCCCCEEecCccC---------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEE
Q 037488 17 FNVSTLNSLYLQNVQ---------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLG 87 (628)
Q Consensus 17 ~~l~~L~~L~l~~n~---------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~ 87 (628)
..+++|+.|+++++. +++|++|+|++|.+++..| +.++++|++|++++|+++++.+ |+++++|+.|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 356789999998875 5689999999999987655 8999999999999999998766 99999999999
Q ss_pred ccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEcc
Q 037488 88 LNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLG 167 (628)
Q Consensus 88 L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~ 167 (628)
+++|.++..+ .+.++++|++|++++|.+.++ + .+..++ .|+.+.++ +.+.+.. .+..+++|+.|+++
T Consensus 119 L~~n~l~~~~-------~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~-~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 119 LFNNQITDID-------PLKNLTNLNRLELSSNTISDI-S-ALSGLT-SLQQLSFG-NQVTDLK--PLANLTTLERLDIS 185 (466)
T ss_dssp CCSSCCCCCG-------GGTTCTTCSEEEEEEEEECCC-G-GGTTCT-TCSEEEEE-ESCCCCG--GGTTCTTCCEEECC
T ss_pred CCCCCCCCCh-------HHcCCCCCCEEECCCCccCCC-h-hhccCC-cccEeecC-CcccCch--hhccCCCCCEEECc
Confidence 9999998764 378899999999999999864 3 366665 78999986 4454432 38899999999999
Q ss_pred CCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCC
Q 037488 168 GNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP 247 (628)
Q Consensus 168 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp 247 (628)
+|.+.+. + .+..+++|++|++++|++.+..| +..+++|+.|++++|++++. +.+..+++|+.|++++|.++.++
T Consensus 186 ~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 186 SNKVSDI-S-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA 259 (466)
T ss_dssp SSCCCCC-G-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCcCCCC-h-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch
Confidence 9999854 3 48899999999999999987654 77899999999999999864 46889999999999999999987
Q ss_pred CCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCC
Q 037488 248 STLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLIN 327 (628)
Q Consensus 248 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 327 (628)
. +..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ ++.+++|+.|++++|++++..| +..+++
T Consensus 260 ~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 332 (466)
T 1o6v_A 260 P-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK 332 (466)
T ss_dssp G-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred h-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCcc
Confidence 6 7889999999999999997655 8899999999999999997655 7789999999999999987665 789999
Q ss_pred CCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCCCcccccccccccCCCcc
Q 037488 328 LKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELL 386 (628)
Q Consensus 328 L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~~ 386 (628)
|+.|++++|.+++. ..+..+++|+.|++++|++++.+| ...+..+......+|+..
T Consensus 333 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred CCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCccc
Confidence 99999999999876 468899999999999999998876 344455555555555443
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=323.24 Aligned_cols=353 Identities=21% Similarity=0.222 Sum_probs=273.5
Q ss_pred CCCCCCEEecCccCC--------CCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEcc
Q 037488 18 NVSTLNSLYLQNVQL--------QNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLN 89 (628)
Q Consensus 18 ~l~~L~~L~l~~n~l--------~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~ 89 (628)
.+...+++++++|++ ++|++|+|++|.++++.|..|.++++|++|+|++|+++++.|++|.++++|++|+|+
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred ccCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 344558899999875 479999999999999888999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCcccccccCCCCCcEEEcccCCCCCC-CchHHhccccccceeeccCCcccccCCccccCCCCC--CEEEc
Q 037488 90 DNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGI-LPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNL--IAIYL 166 (628)
Q Consensus 90 ~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L--~~L~L 166 (628)
+|.++.++. . .+++|++|++++|.++++ .|..|+.++ .|+.|++++|.+.+. .+..+++| +.|++
T Consensus 109 ~N~l~~lp~-------~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~-~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L 176 (562)
T 3a79_B 109 HNRLQNISC-------C-PMASLRHLDLSFNDFDVLPVCKEFGNLT-KLTFLGLSAAKFRQL---DLLPVAHLHLSCILL 176 (562)
T ss_dssp TSCCCEECS-------C-CCTTCSEEECCSSCCSBCCCCGGGGGCT-TCCEEEEECSBCCTT---TTGGGTTSCEEEEEE
T ss_pred CCcCCccCc-------c-ccccCCEEECCCCCccccCchHhhcccC-cccEEecCCCccccC---chhhhhhceeeEEEe
Confidence 999997653 1 789999999999999985 468899886 799999999999864 45555566 99999
Q ss_pred cCCcC--CccccccccCCC-------------------------------------------------------------
Q 037488 167 GGNKL--NGSIPIALGKLQ------------------------------------------------------------- 183 (628)
Q Consensus 167 ~~n~l--~~~~p~~~~~l~------------------------------------------------------------- 183 (628)
++|.+ ++..|..+..+.
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 99999 666666655543
Q ss_pred --------------------CCCEeecccCcccccCCccc-----cCC--------------------------CCCCEE
Q 037488 184 --------------------KLQLLNLEYNQLEGSIPDDL-----CRL--------------------------AALFQL 212 (628)
Q Consensus 184 --------------------~L~~L~L~~n~l~~~~p~~~-----~~l--------------------------~~L~~L 212 (628)
+|++|++++|++.+.+|..+ ..+ .+|+.|
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence 56666666666666666554 222 235556
Q ss_pred EccCCcCcccCCCCccCCCCCcEEEccCCcCCc-CCCCccCCCCCcEEEcCCCCCcCCC--CCcccCCccccEEEcCCCc
Q 037488 213 DLGSNKLSGFVPASFGNLTNLRSLHLGSNQITS-IPSTLLNLKDILYLNLSSNFFTGPL--PLEIGNLKVLIKIDLSMNN 289 (628)
Q Consensus 213 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~N~ 289 (628)
++++|.+.... ....+++|++|++++|++++ +|..+..+++|++|++++|.+++.. |..+..+++|+.|++++|.
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 66666554221 12677889999999999887 6778888899999999999888643 4568888999999999999
Q ss_pred CCCCCc-cccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCC
Q 037488 290 FSGVIP-ITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPR 368 (628)
Q Consensus 290 l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~ 368 (628)
+++.+| ..+..+++|++|++++|++++..|..+. ++|+.|++++|+++. +|..+..+++|+.|++++|++++ +|.
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~-l~~ 490 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPD 490 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCC-CCT
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCC-CCH
Confidence 887344 4577888999999999998876665443 689999999999985 45445588999999999999884 444
Q ss_pred C--CcccccccccccCCCcccC
Q 037488 369 E--GSFRNFLAESFKGNELLCG 388 (628)
Q Consensus 369 ~--~~~~~~~~~~~~~~~~~~~ 388 (628)
. ..+..+....+.+|+..|.
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 491 GVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp TSTTTCTTCCCEECCSCCBCCC
T ss_pred HHHhcCCCCCEEEecCCCcCCC
Confidence 2 3345566667777877764
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=324.59 Aligned_cols=336 Identities=19% Similarity=0.216 Sum_probs=291.1
Q ss_pred cCCCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCC
Q 037488 30 VQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNC 109 (628)
Q Consensus 30 n~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l 109 (628)
..+.+++.|++++|.+..+++..|.++++|+.|+|++|.++++.+..|+++++|+.|+|++|.++.+++. .|.++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l 122 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-----VFQNV 122 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTC
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH-----HHcCC
Confidence 3477899999999999988888899999999999999999999999999999999999999999987653 47899
Q ss_pred CCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEee
Q 037488 110 KYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLN 189 (628)
Q Consensus 110 ~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 189 (628)
++|++|+|++|.++++.+..|..++ .|+.|++++|.+.+..|..|..+++|+.|++++|.+++.. ++.+++|+.|+
T Consensus 123 ~~L~~L~L~~n~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~ 198 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHAN 198 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEE
T ss_pred CCCCEEEeeCCCCCCCCHHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhh
Confidence 9999999999999988777778776 7999999999999999999999999999999999998642 56789999999
Q ss_pred cccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCC
Q 037488 190 LEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGP 269 (628)
Q Consensus 190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~ 269 (628)
+++|.+.+ +...++|+.|++++|.+....+... ++|+.|+|++|.++.. ..+..+++|++|++++|.+++.
T Consensus 199 l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~~---~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~ 269 (597)
T 3oja_B 199 VSYNLLST-----LAIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKI 269 (597)
T ss_dssp CCSSCCSE-----EECCTTCSEEECCSSCCCEEECSCC---SCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEE
T ss_pred cccCcccc-----ccCCchhheeeccCCcccccccccC---CCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCC
Confidence 99998874 3455689999999999987654433 6899999999999985 5788899999999999999999
Q ss_pred CCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcC
Q 037488 270 LPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKL 349 (628)
Q Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 349 (628)
.|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++.. +..+
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~ 344 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTH 344 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTT
T ss_pred CHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhc
Confidence 99999999999999999999986 5667788999999999999998 67778899999999999999998763 5678
Q ss_pred CCCCEEEccCCcceecCCCCCcccccccccccCCCcccCC
Q 037488 350 LDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGM 389 (628)
Q Consensus 350 ~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~ 389 (628)
++|+.|++++|++.+.... ..+..+....+.++...|+.
T Consensus 345 ~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 345 HTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp CCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred CCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence 8999999999999875432 12334444455666667764
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=297.59 Aligned_cols=305 Identities=27% Similarity=0.422 Sum_probs=262.9
Q ss_pred CCCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCC
Q 037488 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCK 110 (628)
Q Consensus 31 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~ 110 (628)
++++|++|++++|.+... | .+..+++|++|++++|+++++.+ |.++++|++|++++|.++.+ ..+.+++
T Consensus 42 ~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~-------~~~~~l~ 110 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI-------SALQNLT 110 (347)
T ss_dssp HHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-------GGGTTCT
T ss_pred hcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-------hHHcCCC
Confidence 367788888888888753 4 37889999999999999998755 99999999999999998875 3578999
Q ss_pred CCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeec
Q 037488 111 YLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNL 190 (628)
Q Consensus 111 ~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 190 (628)
+|++|++++|.+.+..+ +..++ .++.+++++|.....++ .+..+++|+.|++++|.+.+..+ +..+++|++|++
T Consensus 111 ~L~~L~l~~n~i~~~~~--~~~l~-~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l 184 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP--LANLT-KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GTTCT-TCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEEC
T ss_pred cCCEEECcCCcccCchh--hccCC-ceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEc
Confidence 99999999999987654 66665 79999999997665544 48999999999999999986544 889999999999
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCC
Q 037488 191 EYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPL 270 (628)
Q Consensus 191 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~ 270 (628)
++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|++|++++|.+++.
T Consensus 185 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp TTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-
T ss_pred cCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-
Confidence 9999985433 8899999999999999987544 8899999999999999999887 88899999999999999864
Q ss_pred CCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCC
Q 037488 271 PLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLL 350 (628)
Q Consensus 271 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 350 (628)
..+..+++|+.|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..| +..++
T Consensus 259 -~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred -hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence 4688999999999999999865 357889999999999999998889999999999999999999998766 88899
Q ss_pred CCCEEEccCCcce
Q 037488 351 DLKDINVSFNKLE 363 (628)
Q Consensus 351 ~L~~l~l~~N~l~ 363 (628)
+|+.|++++|+++
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 9999999999875
|
| >4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=307.21 Aligned_cols=182 Identities=25% Similarity=0.409 Sum_probs=140.3
Q ss_pred cCCCcccccccCCccEEEEEEec------CCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
++|...+.||+|+||+||+|++. +++.||||+++.......+.|.+|+++|++++|||||+++|+|.+++..
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 46777889999999999999863 4788999999876666678899999999999999999999998654311
Q ss_pred -----------------------------------------------------------------------------ccc
Q 037488 499 -----------------------------------------------------------------------------ADF 501 (628)
Q Consensus 499 -----------------------------------------------------------------------------~DF 501 (628)
+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~~~Ki~DF 172 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDF 172 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCC
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCCCcEEECCc
Confidence 499
Q ss_pred cccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCc
Q 037488 502 GMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPIS 580 (628)
Q Consensus 502 Gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~ 580 (628)
|+|+..............+||++|||||++.++.|+.++|||||||++|||+| |+.||.+.... .+...+.
T Consensus 173 Gla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~--~~~~~i~------ 244 (299)
T 4asz_A 173 GMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN--EVIECIT------ 244 (299)
T ss_dssp SCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--HHHHHHH------
T ss_pred ccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH--HHHHHHH------
Confidence 99997654433333344579999999999999999999999999999999999 89999764221 1111111
Q ss_pred cceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 581 VMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+ ..+..|..++.++.+|+.+||+.||++||||+||
T Consensus 245 ---------~~---~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i 280 (299)
T 4asz_A 245 ---------QG---RVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGI 280 (299)
T ss_dssp ---------HT---CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ---------cC---CCCCCCccchHHHHHHHHHHcCCChhHCcCHHHH
Confidence 01 1123445678889999999999999999998764
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=309.58 Aligned_cols=182 Identities=23% Similarity=0.415 Sum_probs=133.2
Q ss_pred cCCCcccccccCCccEEEEEEec------CCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
.+|...+.||+|+||+||+|++. +++.||||+++.......+.|.+|+++|++++|||||+++|+|.+++..
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 45666788999999999999863 4789999999876666678899999999999999999999988653211
Q ss_pred -------------------------------------------------------------------------------c
Q 037488 499 -------------------------------------------------------------------------------A 499 (628)
Q Consensus 499 -------------------------------------------------------------------------------~ 499 (628)
+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~~~~Ki~ 200 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIG 200 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEEC
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECCCCcEEEc
Confidence 4
Q ss_pred cccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcC
Q 037488 500 DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLP 578 (628)
Q Consensus 500 DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~ 578 (628)
|||+|+...........+..+||++|||||++.+..|+.++|||||||++|||+| |+.||.+.... .....+.
T Consensus 201 DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~--~~~~~i~---- 274 (329)
T 4aoj_A 201 DFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNT--EAIDCIT---- 274 (329)
T ss_dssp CCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHH--HHHHHHH----
T ss_pred ccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHH--HHHHHHH----
Confidence 9999997654443333455689999999999999999999999999999999999 89999753211 1111111
Q ss_pred CccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 579 ISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+ .++..|..+++++.+|+.+||+.||++||||+||
T Consensus 275 -----------~g---~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei 310 (329)
T 4aoj_A 275 -----------QG---RELERPRACPPEVYAIMRGCWQREPQQRHSIKDV 310 (329)
T ss_dssp -----------HT---CCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHH
T ss_pred -----------cC---CCCCCcccccHHHHHHHHHHcCcChhHCcCHHHH
Confidence 01 1223445678889999999999999999999764
|
| >4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=305.43 Aligned_cols=181 Identities=22% Similarity=0.368 Sum_probs=138.6
Q ss_pred CCCcccccccCCccEEEEEEec------CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 428 GFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
.+...+.||+|+||+||+|++. +++.||||+++... ....+.|.+|+.++++++|||||+++|+|.+++..
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence 3455678999999999999862 46889999997543 33457899999999999999999999988653211
Q ss_pred --------------------------------------------------------------------------------
Q 037488 499 -------------------------------------------------------------------------------- 498 (628)
Q Consensus 499 -------------------------------------------------------------------------------- 498 (628)
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~~~Ki 186 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKI 186 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEE
T ss_pred EEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEECCCCCEEE
Confidence
Q ss_pred ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhc
Q 037488 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLL 577 (628)
Q Consensus 499 ~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~ 577 (628)
+|||+|+...........+..+||++|||||++.++.|+.++|||||||++|||+| |+.||.+.... .+...+..
T Consensus 187 ~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~--~~~~~i~~-- 262 (308)
T 4gt4_A 187 SDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ--DVVEMIRN-- 262 (308)
T ss_dssp CCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH--HHHHHHHT--
T ss_pred CCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHc--
Confidence 49999997655444444456789999999999999999999999999999999999 89999764221 11111110
Q ss_pred CCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 578 PISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+.|..|+.++.+|+.+||+.||++||||.||
T Consensus 263 ----------------~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei 297 (308)
T 4gt4_A 263 ----------------RQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDI 297 (308)
T ss_dssp ----------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ----------------CCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHH
Confidence 01123455678889999999999999999999764
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=320.90 Aligned_cols=363 Identities=21% Similarity=0.201 Sum_probs=288.5
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccC-----------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcc
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSF 69 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-----------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 69 (628)
||||+|+|+++.|++|.++++|++|+|++|+ +++|++|+|++|+++++.+..|.++++|++|+|++|++
T Consensus 81 L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 6899999999999999999999999999996 56899999999999988888899999999999999999
Q ss_pred ccc-CccccCCCCCCCEEEccCccccCCCCCCcccccccC------------------------CCCCcEEEcccCCCCC
Q 037488 70 YGF-IPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSN------------------------CKYLKYFSFSNNSLDG 124 (628)
Q Consensus 70 ~~~-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~------------------------l~~L~~L~l~~n~l~~ 124 (628)
+++ .|..|+++++|++|++++|+++.+.+.. +..+.+ ...++.+++++|....
T Consensus 161 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~ 238 (635)
T 4g8a_A 161 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD--LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL 238 (635)
T ss_dssp CCCCCCGGGGGCTTCCEEECCSSCCCEECGGG--GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSH
T ss_pred ccCCCchhhccchhhhhhcccCcccccccccc--ccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccc
Confidence 875 4788999999999999999988654210 000100 1111222222221100
Q ss_pred -------------------------------CCc----------------------------------------------
Q 037488 125 -------------------------------ILP---------------------------------------------- 127 (628)
Q Consensus 125 -------------------------------~~p---------------------------------------------- 127 (628)
...
T Consensus 239 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 318 (635)
T 4g8a_A 239 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI 318 (635)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE
T ss_pred cccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc
Confidence 000
Q ss_pred ---hHHhccccccceeeccCCcccccCC-------------------ccccCCCCCCEEEccCCcCCc--cccccccCCC
Q 037488 128 ---RAIGNLSQSMEIFWMHSCNISGGIP-------------------EEISNLTNLIAIYLGGNKLNG--SIPIALGKLQ 183 (628)
Q Consensus 128 ---~~~~~l~~~l~~l~l~~n~~~~~~~-------------------~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~ 183 (628)
..+.. ...++.+.+.+|.+....+ .....+++|+.|++++|.+.. ..+..+..+.
T Consensus 319 ~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~ 397 (635)
T 4g8a_A 319 ERVKDFSY-NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI 397 (635)
T ss_dssp EECGGGGS-CCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCS
T ss_pred cccccccc-chhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhh
Confidence 00000 0124445555554433221 123467899999999998863 3455677889
Q ss_pred CCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCC-CCccCCCCCcEEEccCCcCCcC-CCCccCCCCCcEEEc
Q 037488 184 KLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVP-ASFGNLTNLRSLHLGSNQITSI-PSTLLNLKDILYLNL 261 (628)
Q Consensus 184 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l 261 (628)
+|+.+++..|.+.. .+..+..+++|+.+++..|......+ ..|..+++++.++++.|.+..+ |..+..+++|+.|++
T Consensus 398 ~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~L 476 (635)
T 4g8a_A 398 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 476 (635)
T ss_dssp CCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred hhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence 99999999999874 45678899999999999988766544 5788999999999999999976 455667899999999
Q ss_pred CCCCC-cCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccc
Q 037488 262 SSNFF-TGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSG 340 (628)
Q Consensus 262 ~~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 340 (628)
++|.+ .+..|..|..+++|++|+|++|++++..|..|+.+++|++|+|++|++++..|..|..+++|+.|++++|+|++
T Consensus 477 s~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 477 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred hhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 99974 44678899999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred cCchhhhcC-CCCCEEEccCCcceecCC
Q 037488 341 IIPISLEKL-LDLKDINVSFNKLEGEIP 367 (628)
Q Consensus 341 ~~~~~~~~l-~~L~~l~l~~N~l~~~~p 367 (628)
+.|..+..+ ++|+.|++++|++.+.+.
T Consensus 557 ~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 557 SKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999888 689999999999998664
|
| >3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=300.83 Aligned_cols=186 Identities=27% Similarity=0.380 Sum_probs=134.1
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.+++...+.||+|+||+||+|++.. .||||+++.. ..+..+.|.+|++++++++|||||+++|+|.++...
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy 112 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQW 112 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEEC
T ss_pred HHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECCeEEEEEEc
Confidence 3567778899999999999998753 5999998743 344567899999999999999999999998764421
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|+............
T Consensus 113 ~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~ 192 (307)
T 3omv_A 113 CEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVE 192 (307)
T ss_dssp CSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCBC-----------
T ss_pred CCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeec
Confidence 4999998764433333345
Q ss_pred cccccccccCcccccc---CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 518 QTLATIGYMAPEYGRE---GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~---~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
+.+||+.|||||++.+ ++|+.++|||||||++|||+||+.||.+..... .....+.... .. +
T Consensus 193 ~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~-~~~~~~~~~~-------~~-------p 257 (307)
T 3omv_A 193 QPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD-QIIFMVGRGY-------AS-------P 257 (307)
T ss_dssp -CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH-HHHHHHHTTC-------CC-------C
T ss_pred ccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHH-HHHHHHhcCC-------CC-------C
Confidence 6689999999999864 469999999999999999999999997543211 1111111100 00 1
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+|+.+||+.||++||||.||
T Consensus 258 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei 291 (307)
T 3omv_A 258 DLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQI 291 (307)
T ss_dssp CSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHH
T ss_pred CcccccccchHHHHHHHHHHcCCCHhHCcCHHHH
Confidence 1122345678889999999999999999998764
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=304.83 Aligned_cols=323 Identities=21% Similarity=0.246 Sum_probs=236.5
Q ss_pred cccCCChhccCCCCCCEEecCccC---------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccC
Q 037488 8 LVGVVPTTIFNVSTLNSLYLQNVQ---------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFG 78 (628)
Q Consensus 8 l~~~~p~~~~~l~~L~~L~l~~n~---------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~ 78 (628)
..+..+..++++++|++|++++|. +++|++|+|++|.++++ | +..+++|++|++++|+++++ + |+
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~ 103 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VT 103 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred cCcccccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cC
Confidence 344455567778888888888775 35678888888888764 3 77888888888888888875 2 88
Q ss_pred CCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCC
Q 037488 79 NLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNL 158 (628)
Q Consensus 79 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l 158 (628)
++++|++|++++|.++.++ +.++++|++|++++|.++++ + ++.++ .|+.|++++|...+.+ .+..+
T Consensus 104 ~l~~L~~L~L~~N~l~~l~--------~~~l~~L~~L~l~~N~l~~l-~--l~~l~-~L~~L~l~~n~~~~~~--~~~~l 169 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLD--------VSQNPLLTYLNCARNTLTEI-D--VSHNT-QLTELDCHLNKKITKL--DVTPQ 169 (457)
T ss_dssp TCTTCCEEECCSSCCSCCC--------CTTCTTCCEEECTTSCCSCC-C--CTTCT-TCCEEECTTCSCCCCC--CCTTC
T ss_pred CCCcCCEEECCCCcCCeec--------CCCCCcCCEEECCCCcccee-c--cccCC-cCCEEECCCCCccccc--ccccC
Confidence 8888888888888887642 56788888888888888875 2 45554 6888888888655555 47778
Q ss_pred CCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEc
Q 037488 159 TNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHL 238 (628)
Q Consensus 159 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 238 (628)
++|+.|++++|++++ +| +..+++|+.|++++|++++. .+..+++|++|++++|++++ +| +..+++|+.|++
T Consensus 170 ~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l 240 (457)
T 3bz5_A 170 TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDC 240 (457)
T ss_dssp TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEEC
T ss_pred CcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEe
Confidence 888888888888876 44 77888888888888888764 37788888888888888887 34 778888888888
Q ss_pred cCCcCCcCCCCccCCCCC----------cEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCcc--------ccCC
Q 037488 239 GSNQITSIPSTLLNLKDI----------LYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPI--------TIGY 300 (628)
Q Consensus 239 ~~n~l~~lp~~~~~l~~L----------~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--------~~~~ 300 (628)
++|+++++|. ..+++| +.|++++|.+.+..| ++.+++|+.|++++|...+.+|. .+..
T Consensus 241 ~~N~l~~~~~--~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 241 SVNPLTELDV--STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp CSSCCSCCCC--TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred eCCcCCCcCH--HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 8888888763 233444 445555555444444 45678888888888876655553 2456
Q ss_pred CCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhh-------------cCCCCCEEEccCCcceecCC
Q 037488 301 LKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLE-------------KLLDLKDINVSFNKLEGEIP 367 (628)
Q Consensus 301 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-------------~l~~L~~l~l~~N~l~~~~p 367 (628)
+++|++|++++|++++. + ++.+++|+.|++++|+++++. .+. .+..|..+++++|+++|.+|
T Consensus 317 ~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l~--~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 317 NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDFS--SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBCT--TGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECC
T ss_pred cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCcc--ccccccccCCcEEecceeeecCccccccCcEEEEcC
Confidence 67888999999998874 3 788889999999999888632 111 12345666777777777776
Q ss_pred C
Q 037488 368 R 368 (628)
Q Consensus 368 ~ 368 (628)
.
T Consensus 392 ~ 392 (457)
T 3bz5_A 392 P 392 (457)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=302.19 Aligned_cols=283 Identities=28% Similarity=0.381 Sum_probs=170.8
Q ss_pred CCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcE
Q 037488 35 LEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKY 114 (628)
Q Consensus 35 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~ 114 (628)
|++|++++|.+++ +|.. +++|+.|++++|+++++.. . .++|++|++++|.++.++ .+.++++|++
T Consensus 93 L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-~---~~~L~~L~L~~n~l~~lp-------~~~~l~~L~~ 157 (454)
T 1jl5_A 93 LESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-L---PPLLEYLGVSNNQLEKLP-------ELQNSSFLKI 157 (454)
T ss_dssp CSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-C---CTTCCEEECCSSCCSSCC-------CCTTCTTCCE
T ss_pred CCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-C---CCCCCEEECcCCCCCCCc-------ccCCCCCCCE
Confidence 4555555555543 3321 2455555555555544321 0 145666666666655432 2566667777
Q ss_pred EEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCc
Q 037488 115 FSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQ 194 (628)
Q Consensus 115 L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 194 (628)
|++++|++++ +|.. ...++.|++++|.+.+ +| .++++++|+.|++++|++++ +|.. .++|++|++++|+
T Consensus 158 L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 158 IDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNI 226 (454)
T ss_dssp EECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSC
T ss_pred EECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCc
Confidence 7777776665 2322 1256667777776665 34 46667777777777777664 3332 2466777777777
Q ss_pred ccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcc
Q 037488 195 LEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEI 274 (628)
Q Consensus 195 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 274 (628)
+. .+| .+..+++|++|++++|++++ +|.. +++|+.|++++|+++++|.. .++|++|++++|.+++.. ..
T Consensus 227 l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~-~~- 295 (454)
T 1jl5_A 227 LE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLS-EL- 295 (454)
T ss_dssp CS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEES-CC-
T ss_pred CC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCccc-Cc-
Confidence 66 445 36667777777777777764 2322 35677777777777766653 256777777777766521 11
Q ss_pred cCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCE
Q 037488 275 GNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKD 354 (628)
Q Consensus 275 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 354 (628)
.++|+.|++++|++++. +. ..++|++|++++|++++ +|.. +++|+.|++++|.++++ |. .+++|+.
T Consensus 296 --~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~---~l~~L~~ 361 (454)
T 1jl5_A 296 --PPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE---LPQNLKQ 361 (454)
T ss_dssp --CTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCE
T ss_pred --CCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc---hhhhccE
Confidence 14566666776666542 11 12578888888888875 5543 47788888888888754 33 4678888
Q ss_pred EEccCCccee--cCCC
Q 037488 355 INVSFNKLEG--EIPR 368 (628)
Q Consensus 355 l~l~~N~l~~--~~p~ 368 (628)
|++++|++++ .+|.
T Consensus 362 L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 362 LHVEYNPLREFPDIPE 377 (454)
T ss_dssp EECCSSCCSSCCCCCT
T ss_pred EECCCCCCCcCCCChH
Confidence 8888888887 5554
|
| >4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=303.84 Aligned_cols=182 Identities=23% Similarity=0.232 Sum_probs=142.4
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
..|+..+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|+++|++++|||||++++++.+++..
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 5689999999999999999987 67999999999866555566789999999999999999999987654321
Q ss_pred ----------------------------------------------------------ccccccccccccCccccccccc
Q 037488 499 ----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTL 520 (628)
Q Consensus 499 ----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~ 520 (628)
+|||+|+.+.... ....+.+
T Consensus 154 ~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~--~~~~~~~ 231 (346)
T 4fih_A 154 EGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV--PRRKSLV 231 (346)
T ss_dssp TTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSS--CCBCCCC
T ss_pred CCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCCCC--Ccccccc
Confidence 4999999764432 2235678
Q ss_pred ccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhch
Q 037488 521 ATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600 (628)
Q Consensus 521 gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (628)
||++|||||++.+..|+.++||||+||++|||++|++||.+.... .....+... .......+
T Consensus 232 GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~--~~~~~i~~~----------------~~~~~~~~ 293 (346)
T 4fih_A 232 GTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL--KAMKMIRDN----------------LPPRLKNL 293 (346)
T ss_dssp SCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHS----------------SCCCCSCG
T ss_pred cCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH--HHHHHHHcC----------------CCCCCCcc
Confidence 999999999999999999999999999999999999999753211 111111110 01112233
Q ss_pred hhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 601 GQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 601 ~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+++++++|+.+||+.||++|||+.|+
T Consensus 294 ~~~s~~~~dli~~~L~~dP~~R~ta~e~ 321 (346)
T 4fih_A 294 HKVSPSLKGFLDRLLVRDPAQRATAAEL 321 (346)
T ss_dssp GGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred ccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 4567789999999999999999998763
|
| >4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=297.97 Aligned_cols=181 Identities=18% Similarity=0.255 Sum_probs=142.9
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||++++++.+++..
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 5799999999999999999987 679999999997542 23456789999999999999999999988765422
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+.+.........
T Consensus 112 Ey~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~ 191 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARA 191 (311)
T ss_dssp CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCB
T ss_pred ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccc
Confidence 499999987544433344
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
.+.+||+.|||||++.+..|+.++||||+||++|||+||++||.+... ...... +....
T Consensus 192 ~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-----~~~~~~------------i~~~~---- 250 (311)
T 4aw0_A 192 NSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE-----GLIFAK------------IIKLE---- 250 (311)
T ss_dssp CCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHH------------HHHTC----
T ss_pred cCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHH------------HHcCC----
Confidence 667999999999999999999999999999999999999999965321 111111 11111
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..|...++++++|+.+||++||++|||++|+
T Consensus 251 ~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~ 282 (311)
T 4aw0_A 251 YDFPEKFFPKARDLVEKLLVLDATKRLGCEEM 282 (311)
T ss_dssp CCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGG
T ss_pred CCCCcccCHHHHHHHHHHccCCHhHCcChHHH
Confidence 11233456779999999999999999999863
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=289.47 Aligned_cols=299 Identities=27% Similarity=0.401 Sum_probs=260.0
Q ss_pred hccCCCCCCEEecCccC---------CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCE
Q 037488 15 TIFNVSTLNSLYLQNVQ---------LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNR 85 (628)
Q Consensus 15 ~~~~l~~L~~L~l~~n~---------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~ 85 (628)
.+..+++|+.|+++++. +++|++|++++|.+++..+ +.++++|++|++++|.++.+ .+|.++++|++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence 35678999999999886 5679999999999986544 89999999999999999985 36999999999
Q ss_pred EEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEE
Q 037488 86 LGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIY 165 (628)
Q Consensus 86 L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~ 165 (628)
|++++|.++..+ .+.++++|++|++++|......+. +..++ .|+.+++++|.+.+..+ +..+++|+.|+
T Consensus 115 L~l~~n~i~~~~-------~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~-~L~~L~l~~~~~~~~~~--~~~l~~L~~L~ 183 (347)
T 4fmz_A 115 LYLNEDNISDIS-------PLANLTKMYSLNLGANHNLSDLSP-LSNMT-GLNYLTVTESKVKDVTP--IANLTDLYSLS 183 (347)
T ss_dssp EECTTSCCCCCG-------GGTTCTTCCEEECTTCTTCCCCGG-GTTCT-TCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred EECcCCcccCch-------hhccCCceeEEECCCCCCcccccc-hhhCC-CCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence 999999998753 378899999999999976655444 66665 79999999999886544 88999999999
Q ss_pred ccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCc
Q 037488 166 LGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITS 245 (628)
Q Consensus 166 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (628)
+++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.++.
T Consensus 184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred ccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC
Confidence 99999986543 8899999999999999986543 8899999999999999987554 8999999999999999999
Q ss_pred CCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCC
Q 037488 246 IPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDL 325 (628)
Q Consensus 246 lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 325 (628)
++ .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..++.+++|++|++++|++++..| +..+
T Consensus 258 ~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l 332 (347)
T 4fmz_A 258 IN-AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL 332 (347)
T ss_dssp CG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGC
T ss_pred Ch-hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhh
Confidence 84 577899999999999999875 458899999999999999998888989999999999999999987655 8889
Q ss_pred CCCCEEECcCCccc
Q 037488 326 INLKSLDLSNNNLS 339 (628)
Q Consensus 326 ~~L~~L~l~~N~l~ 339 (628)
++|+.|++++|.++
T Consensus 333 ~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 333 SKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEESSSCC---
T ss_pred hccceeehhhhccc
Confidence 99999999999886
|
| >4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=301.77 Aligned_cols=181 Identities=17% Similarity=0.233 Sum_probs=135.1
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
.++|+..+.||+|+||+||+|+. .+|+.||||+++.. .....+.+.+|++++++++|||||++++++.+++..
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEE
Confidence 47899999999999999999987 67999999999754 234567899999999999999999999987543321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+|+.+.... .
T Consensus 103 Ey~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~--~ 180 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV--E 180 (350)
T ss_dssp ECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHH--H
T ss_pred eCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceeecCCc--c
Confidence 4999999764322 1
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
...+.+||+.|||||++.+..|+.++||||+||++|||+||++||.+.. ........ .....
T Consensus 181 ~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~-----~~~~~~~i------------~~~~~- 242 (350)
T 4b9d_A 181 LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGS-----MKNLVLKI------------ISGSF- 242 (350)
T ss_dssp HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS-----HHHHHHHH------------HHTCC-
T ss_pred cccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC-----HHHHHHHH------------HcCCC-
Confidence 2345689999999999999999999999999999999999999997532 11111111 11111
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..+..++.++++|+.+||+.||++|||+.|+
T Consensus 243 --~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~ 274 (350)
T 4b9d_A 243 --PPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSI 274 (350)
T ss_dssp --CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred --CCCCccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 11233467789999999999999999998763
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=293.40 Aligned_cols=299 Identities=18% Similarity=0.199 Sum_probs=256.6
Q ss_pred CCCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCC
Q 037488 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCK 110 (628)
Q Consensus 31 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~ 110 (628)
++++|++|++++|.+++. | .+..+++|++|+|++|+++++ | |+.+++|++|++++|.++.++ +.+++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~--------~~~l~ 106 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD--------VTPLT 106 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC--------CTTCT
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee--------cCCCC
Confidence 378999999999999975 5 689999999999999999986 3 999999999999999998752 67899
Q ss_pred CCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeec
Q 037488 111 YLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNL 190 (628)
Q Consensus 111 ~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 190 (628)
+|++|++++|.++++ | ++.++ .|+.|++++|.+++. .++.+++|+.|++++|...+.+ .++.+++|++|++
T Consensus 107 ~L~~L~L~~N~l~~l-~--~~~l~-~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL-D--VSQNP-LLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TCCEEECCSSCCSCC-C--CTTCT-TCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred cCCEEECCCCcCCee-c--CCCCC-cCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 999999999999985 3 66665 799999999999984 3889999999999999666555 4789999999999
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCC
Q 037488 191 EYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPL 270 (628)
Q Consensus 191 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~ 270 (628)
++|++++ +| +..+++|+.|++++|++++. .++.+++|+.|++++|+++++| +..+++|++|++++|.+++..
T Consensus 178 s~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 178 SFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred CCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence 9999996 44 88999999999999999875 4889999999999999999998 778999999999999999876
Q ss_pred CCcccCCc-------cccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCCh--------hhcCCCCCCEEECcC
Q 037488 271 PLEIGNLK-------VLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPD--------SIGDLINLKSLDLSN 335 (628)
Q Consensus 271 ~~~~~~l~-------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~--------~~~~l~~L~~L~l~~ 335 (628)
+..+..+. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. .++.+++|+.|++++
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN 327 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC
Confidence 65555554 45566666666665555 46789999999999987665553 256678999999999
Q ss_pred CcccccCchhhhcCCCCCEEEccCCccee
Q 037488 336 NNLSGIIPISLEKLLDLKDINVSFNKLEG 364 (628)
Q Consensus 336 N~l~~~~~~~~~~l~~L~~l~l~~N~l~~ 364 (628)
|+++++ + +..+++|+.|++++|++++
T Consensus 328 N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 328 TELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred Cccccc-c--cccCCcCcEEECCCCCCCC
Confidence 999985 3 8889999999999999987
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=291.79 Aligned_cols=312 Identities=18% Similarity=0.234 Sum_probs=273.5
Q ss_pred CCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccc
Q 037488 55 NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLS 134 (628)
Q Consensus 55 ~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 134 (628)
.+++++.|++++|.+..+.+..|.++++|++|++++|.++.+++ ..+.++++|++|++++|.++++.|..|..++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-----YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh-----hhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 46899999999999999888889999999999999999987654 3588999999999999999999999898886
Q ss_pred cccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEc
Q 037488 135 QSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDL 214 (628)
Q Consensus 135 ~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 214 (628)
.|+.|++++|.+....+..|..+++|++|++++|.+.+..|..+..+++|++|++++|++++. .+..+++|+.|++
T Consensus 118 -~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l 193 (390)
T 3o6n_A 118 -LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 193 (390)
T ss_dssp -TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEEC
T ss_pred -CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeec
Confidence 799999999999976666689999999999999999988888899999999999999999864 3677899999999
Q ss_pred cCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCC
Q 037488 215 GSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVI 294 (628)
Q Consensus 215 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 294 (628)
++|.+++. ...++|+.|++++|.++.+|... .++|+.|++++|.+++. ..+..+++|+.|++++|.+++..
T Consensus 194 ~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~ 264 (390)
T 3o6n_A 194 SYNLLSTL-----AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 264 (390)
T ss_dssp CSSCCSEE-----ECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred cccccccc-----CCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC
Confidence 99998754 33468999999999999987654 47999999999999864 57899999999999999999988
Q ss_pred ccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCCCcccc
Q 037488 295 PITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374 (628)
Q Consensus 295 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~ 374 (628)
|..+..+++|++|++++|++++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|+++... ...+..
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~ 340 (390)
T 3o6n_A 265 YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK--LSTHHT 340 (390)
T ss_dssp SGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC--CCTTCC
T ss_pred hhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC--chhhcc
Confidence 9999999999999999999985 56667889999999999999985 4666888999999999999998543 334566
Q ss_pred cccccccCCCcccC
Q 037488 375 FLAESFKGNELLCG 388 (628)
Q Consensus 375 ~~~~~~~~~~~~~~ 388 (628)
+....+.+|+..|.
T Consensus 341 L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 341 LKNLTLSHNDWDCN 354 (390)
T ss_dssp CSEEECCSSCEEHH
T ss_pred CCEEEcCCCCccch
Confidence 77777888887764
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-33 Score=281.74 Aligned_cols=287 Identities=25% Similarity=0.295 Sum_probs=211.3
Q ss_pred CCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCc
Q 037488 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLK 113 (628)
Q Consensus 34 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~ 113 (628)
+++.+++++|.++ .+|..+ .++|+.|++++|.++++.+.+|.++++|++|++++|.++.+.+ ..+.++++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-----KAFSPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-----GGSTTCTTCC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-----hHhhCcCCCC
Confidence 4667777777766 344433 2567777777777777777777777777777777777765532 3466777777
Q ss_pred EEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCc--cccccccCCCCCCEeecc
Q 037488 114 YFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNG--SIPIALGKLQKLQLLNLE 191 (628)
Q Consensus 114 ~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~ 191 (628)
+|++++|.++.+.+. +. ..|+.|++++|.+....+..|..+++|+.|++++|.++. ..|..+..+ +|++|+++
T Consensus 106 ~L~L~~n~l~~l~~~-~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 106 KLYISKNHLVEIPPN-LP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp EEECCSSCCCSCCSS-CC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred EEECCCCcCCccCcc-cc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 777777777744332 22 367777777777776666678888888888888888853 566677777 88888888
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCC-CccCCCCCcEEEcCCCCCcCCC
Q 037488 192 YNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPL 270 (628)
Q Consensus 192 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~ 270 (628)
+|++.+ +|..+. ++|++|++++|.+++..+..|..+++|+.|++++|+++.++. .+..+++|++|++++|.++ .+
T Consensus 181 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 181 EAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp SSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred CCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence 888875 454443 678888888888887777788888888888888888888764 5677888888888888887 56
Q ss_pred CCcccCCccccEEEcCCCcCCCCCccccCC------CCCCCEEeCCCCcCc--ccCChhhcCCCCCCEEECcCCc
Q 037488 271 PLEIGNLKVLIKIDLSMNNFSGVIPITIGY------LKDLQYLFLEYNRLQ--GSIPDSIGDLINLKSLDLSNNN 337 (628)
Q Consensus 271 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~N~ 337 (628)
|..+..+++|+.|++++|++++..+..|.. ...|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 667888888888888888888776666654 367889999999887 5677888899999999998874
|
| >3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=288.72 Aligned_cols=179 Identities=19% Similarity=0.290 Sum_probs=125.5
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||++++++.+++..
T Consensus 12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv 91 (275)
T 3hyh_A 12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence 36899999999999999999987 679999999997532 23356789999999999999999999988665422
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+...... ..
T Consensus 92 mEy~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~---~~ 168 (275)
T 3hyh_A 92 IEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN---FL 168 (275)
T ss_dssp EECCCEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC------------
T ss_pred EeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeecCCCC---cc
Confidence 4999998654332 23
Q ss_pred ccccccccccCccccccCcc-CcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 517 TQTLATIGYMAPEYGREGRV-STNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~-~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
.+.+||+.|||||++.+..| +.++||||+||++|||+||+.||.+.. ......... ...
T Consensus 169 ~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~-----~~~~~~~i~------------~~~--- 228 (275)
T 3hyh_A 169 KTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES-----IPVLFKNIS------------NGV--- 228 (275)
T ss_dssp ------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHHHH------------HTC---
T ss_pred CCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCC-----HHHHHHHHH------------cCC---
Confidence 45789999999999998886 579999999999999999999996521 111111110 000
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..|..+++++++|+.+||+.||++|||++|+
T Consensus 229 -~~~p~~~s~~~~~li~~~L~~dP~~R~s~~ei 260 (275)
T 3hyh_A 229 -YTLPKFLSPGAAGLIKRMLIVNPLNRISIHEI 260 (275)
T ss_dssp -CCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred -CCCCCCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 11233456779999999999999999998763
|
| >4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=303.70 Aligned_cols=183 Identities=22% Similarity=0.230 Sum_probs=142.5
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
...|+..+.||+|+||.||+|+. .+|+.||||+++.......+.+.+|+++|++++|||||++++++..++..
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence 35699999999999999999987 67999999999866555566789999999999999999999987654321
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||+|+.+.... ....+.
T Consensus 230 ~~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~--~~~~~~ 307 (423)
T 4fie_A 230 LEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV--PRRKSL 307 (423)
T ss_dssp CTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSC--CCBCCC
T ss_pred CCCCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCCCC--cccccc
Confidence 4999999764432 233567
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhc
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVI 599 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (628)
+||++|||||++.+..|+.++||||+||++|||++|++||.+.... ......... .......
T Consensus 308 ~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~--~~~~~i~~~----------------~~~~~~~ 369 (423)
T 4fie_A 308 VGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL--KAMKMIRDN----------------LPPRLKN 369 (423)
T ss_dssp EECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHS----------------CCCCCSC
T ss_pred ccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH--HHHHHHHcC----------------CCCCCcc
Confidence 8999999999999999999999999999999999999999653211 111111110 0011122
Q ss_pred hhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 600 KGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 600 ~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..++.++++|+.+||+.||++|||+.|+
T Consensus 370 ~~~~s~~~~dli~~~L~~dP~~R~ta~el 398 (423)
T 4fie_A 370 LHKVSPSLKGFLDRLLVRDPAQRATAAEL 398 (423)
T ss_dssp TTSSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred cccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 33457789999999999999999998763
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=291.49 Aligned_cols=331 Identities=27% Similarity=0.352 Sum_probs=251.9
Q ss_pred CcccCCCcccCCChhccCCCCCCEEecCccCCC------------------------CCCEEEccCCcceecCCccccCC
Q 037488 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQLQ------------------------NLEELLLWGNNFSGTIPSFIFNA 56 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~l~------------------------~L~~L~ls~N~l~~~~p~~~~~l 56 (628)
|++++|++ +.+|..|+++++|++|++++|++. ++++|++++|.++++ |.. .
T Consensus 16 L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~~---~ 90 (454)
T 1jl5_A 16 PLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PEL---P 90 (454)
T ss_dssp -------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CSC---C
T ss_pred hhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-CCC---c
Confidence 57889999 688889999999999999887521 358999999999864 432 4
Q ss_pred CCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccc
Q 037488 57 SKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQS 136 (628)
Q Consensus 57 ~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~ 136 (628)
++|+.|++++|.++++ |.. +++|+.|++++|.++.++. + .++|++|++++|.+++ +| .|+.++ .
T Consensus 91 ~~L~~L~l~~n~l~~l-p~~---~~~L~~L~l~~n~l~~l~~-------~--~~~L~~L~L~~n~l~~-lp-~~~~l~-~ 154 (454)
T 1jl5_A 91 PHLESLVASCNSLTEL-PEL---PQSLKSLLVDNNNLKALSD-------L--PPLLEYLGVSNNQLEK-LP-ELQNSS-F 154 (454)
T ss_dssp TTCSEEECCSSCCSSC-CCC---CTTCCEEECCSSCCSCCCS-------C--CTTCCEEECCSSCCSS-CC-CCTTCT-T
T ss_pred CCCCEEEccCCcCCcc-ccc---cCCCcEEECCCCccCcccC-------C--CCCCCEEECcCCCCCC-Cc-ccCCCC-C
Confidence 7999999999999984 543 4899999999999987542 1 2689999999999997 55 477775 7
Q ss_pred cceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccC
Q 037488 137 MEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGS 216 (628)
Q Consensus 137 l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 216 (628)
|+.|++++|.+++ +|..+ .+|++|++++|++.+ +| .++.+++|++|++++|++.+ +|.. .++|++|++++
T Consensus 155 L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~ 224 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGN 224 (454)
T ss_dssp CCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCS
T ss_pred CCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcC
Confidence 9999999999986 55443 589999999999986 56 59999999999999999985 4443 25899999999
Q ss_pred CcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCcc
Q 037488 217 NKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPI 296 (628)
Q Consensus 217 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 296 (628)
|.++ .+| .++.+++|++|++++|+++++|.. +++|++|++++|.+++ +|.. +++|+.|++++|.+++. |.
T Consensus 225 n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~ 294 (454)
T 1jl5_A 225 NILE-ELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE 294 (454)
T ss_dssp SCCS-SCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC
T ss_pred CcCC-ccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC
Confidence 9998 456 489999999999999999999864 4789999999999986 4443 37899999999999863 22
Q ss_pred ccCCCCCCCEEeCCCCcCcccCChhhcCC-CCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCCCccccc
Q 037488 297 TIGYLKDLQYLFLEYNRLQGSIPDSIGDL-INLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNF 375 (628)
Q Consensus 297 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~ 375 (628)
..++|+.|++++|++++ ++ .+ ++|+.|++++|+++++ |.. +++|+.|++++|++++ +|. ....+
T Consensus 295 ---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~l-p~~---~~~L~~L~L~~N~l~~-lp~--~l~~L 359 (454)
T 1jl5_A 295 ---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIEL-PAL---PPRLERLIASFNHLAE-VPE--LPQNL 359 (454)
T ss_dssp ---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSC-CCC--CCTTC
T ss_pred ---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCccccc-ccc---CCcCCEEECCCCcccc-ccc--hhhhc
Confidence 13689999999999985 33 23 5899999999999974 433 5899999999999984 565 34566
Q ss_pred ccccccCCCccc
Q 037488 376 LAESFKGNELLC 387 (628)
Q Consensus 376 ~~~~~~~~~~~~ 387 (628)
....+.+|....
T Consensus 360 ~~L~L~~N~l~~ 371 (454)
T 1jl5_A 360 KQLHVEYNPLRE 371 (454)
T ss_dssp CEEECCSSCCSS
T ss_pred cEEECCCCCCCc
Confidence 666666665443
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=276.78 Aligned_cols=288 Identities=23% Similarity=0.284 Sum_probs=192.7
Q ss_pred CCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCc
Q 037488 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLK 113 (628)
Q Consensus 34 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~ 113 (628)
+++.++++++.++. +|..+ .++|+.|+|++|+++++.+..|+++++|++|++++|.++.+.+ ..+.++++|+
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~ 103 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-----GAFAPLVKLE 103 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT-----TTTTTCTTCC
T ss_pred CCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH-----HHhcCCCCCC
Confidence 46666666666653 34333 2566777777777776666667777777777777776665533 2456667777
Q ss_pred EEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCc--cccccccCCCCCCEeecc
Q 037488 114 YFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNG--SIPIALGKLQKLQLLNLE 191 (628)
Q Consensus 114 ~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~ 191 (628)
+|++++|.++.+ |..+. ..|+.|++++|.+.+..+..|.++++|+.|++++|.+.. ..+..+..+++|++|+++
T Consensus 104 ~L~Ls~n~l~~l-~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 104 RLYLSKNQLKEL-PEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp EEECCSSCCSBC-CSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred EEECCCCcCCcc-Chhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 777777776643 32221 356677777777766666667777777777777777753 455667777777777777
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCC-CccCCCCCcEEEcCCCCCcCCC
Q 037488 192 YNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPL 270 (628)
Q Consensus 192 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~ 270 (628)
+|++.. +|..+. ++|++|++++|++++..+..|..+++|+.|++++|.++.++. .+..+++|++|++++|.++ .+
T Consensus 180 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 180 DTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp SSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred CCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 777763 444333 677777777777777667777777777777777777776544 5666777777777777776 45
Q ss_pred CCcccCCccccEEEcCCCcCCCCCccccCC------CCCCCEEeCCCCcCcc--cCChhhcCCCCCCEEECcCCc
Q 037488 271 PLEIGNLKVLIKIDLSMNNFSGVIPITIGY------LKDLQYLFLEYNRLQG--SIPDSIGDLINLKSLDLSNNN 337 (628)
Q Consensus 271 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~N~ 337 (628)
|..+..+++|++|++++|++++..+..|.. ...|+.|++++|.+.. ..|..|..+.+++.+++++|+
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 666777777777777777777666655543 3678888888888753 556778888888899988874
|
| >3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=284.96 Aligned_cols=176 Identities=23% Similarity=0.331 Sum_probs=131.2
Q ss_pred CcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCC-----------
Q 037488 430 SENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSND----------- 495 (628)
Q Consensus 430 ~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~----------- 495 (628)
...+.||+|+||+||+|.. .+++.||||++... .....+.|.+|++++++++|||||+++++|...
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 4456799999999999987 67999999999753 234467799999999999999999999876421
Q ss_pred ------Ccc--------------------------------------------------------ccccccccccccCcc
Q 037488 496 ------DFK--------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 496 ------~~~--------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+.. +|||+|+.....
T Consensus 109 Ey~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~--- 185 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS--- 185 (290)
T ss_dssp ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTT---
T ss_pred eCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCC---
Confidence 100 499999854222
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
...+.+||+.|||||++.+ +|+.++|||||||++|||+||++||.+... .......... ..
T Consensus 186 -~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~----~~~~~~~i~~------------~~- 246 (290)
T 3fpq_A 186 -FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN----AAQIYRRVTS------------GV- 246 (290)
T ss_dssp -SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS----HHHHHHHHTT------------TC-
T ss_pred -ccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCc----HHHHHHHHHc------------CC-
Confidence 2346789999999999865 699999999999999999999999965321 1111111110 00
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..+++++.+|+.+||+.||++|||++|+
T Consensus 247 -~~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~ 280 (290)
T 3fpq_A 247 -KPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDL 280 (290)
T ss_dssp -CCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred -CCCCCCccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 0112233456679999999999999999998763
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=282.42 Aligned_cols=252 Identities=35% Similarity=0.569 Sum_probs=210.0
Q ss_pred cceeeccCCcccc--cCCccccCCCCCCEEEccC-CcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEE
Q 037488 137 MEIFWMHSCNISG--GIPEEISNLTNLIAIYLGG-NKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLD 213 (628)
Q Consensus 137 l~~l~l~~n~~~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 213 (628)
++.+++++|.+.+ .+|..|.++++|++|++++ |.+.+.+|..++.+++|++|+|++|++.+.+|..+.++++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 4444444455544 5566777788888888884 778777888888888888888888888877888888888888888
Q ss_pred ccCCcCcccCCCCccCCCCCcEEEccCCcCC-cCCCCccCCC-CCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCC
Q 037488 214 LGSNKLSGFVPASFGNLTNLRSLHLGSNQIT-SIPSTLLNLK-DILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFS 291 (628)
Q Consensus 214 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (628)
+++|.+++..|..|..+++|++|++++|+++ .+|..+..++ +|++|++++|.+++..|..+..+. |+.|++++|.++
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence 8888888778888888888888888888887 5788888877 888888888888888888888887 899999999998
Q ss_pred CCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCCCc
Q 037488 292 GVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGS 371 (628)
Q Consensus 292 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~~~ 371 (628)
+..|..+..+++|+.|++++|++++.+|. +..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|....
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 289 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCcc
Confidence 88888888899999999999999866665 78889999999999999988899999999999999999999999998877
Q ss_pred ccccccccccCCCcccCCC
Q 037488 372 FRNFLAESFKGNELLCGMP 390 (628)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~ 390 (628)
+..+....+.+|+.+|+.|
T Consensus 290 l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGGSCGGGTCSSSEEESTT
T ss_pred ccccChHHhcCCCCccCCC
Confidence 8888888899999999865
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-35 Score=290.86 Aligned_cols=178 Identities=19% Similarity=0.204 Sum_probs=134.7
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
+.|...+.||+|+||+||+|+. .+|+.||||+++.... +.+|++++++++|||||++++++.+++..
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 132 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELL 132 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEecc
Confidence 4577788999999999999997 6799999999975432 24799999999999999999987654321
Q ss_pred ------------------------------------------------------------ccccccccccccCcc---cc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQS---LI 515 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~---~~ 515 (628)
+|||+|+.+...... ..
T Consensus 133 ~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~ 212 (336)
T 4g3f_A 133 EGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLT 212 (336)
T ss_dssp TTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC-----------
T ss_pred CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceec
Confidence 499999976543211 11
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
....+||+.|||||++.+..|+.++||||+||++|||+||++||.+...... ...... .. ..
T Consensus 213 ~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~-~~~i~~----------------~~-~~ 274 (336)
T 4g3f_A 213 GDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL-CLKIAS----------------EP-PP 274 (336)
T ss_dssp -CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC-HHHHHH----------------SC-CG
T ss_pred CCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH-HHHHHc----------------CC-CC
Confidence 2345799999999999999999999999999999999999999976443321 111111 00 01
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
....+..+++++.+++.+||++||++|||+.|
T Consensus 275 ~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~e 306 (336)
T 4g3f_A 275 IREIPPSCAPLTAQAIQEGLRKEPVHRASAME 306 (336)
T ss_dssp GGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred chhcCccCCHHHHHHHHHHccCCHhHCcCHHH
Confidence 12244567888999999999999999999876
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-33 Score=303.96 Aligned_cols=312 Identities=18% Similarity=0.234 Sum_probs=276.8
Q ss_pred CCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccc
Q 037488 55 NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLS 134 (628)
Q Consensus 55 ~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 134 (628)
.+.+++.|++++|.+..+++..|.++++|+.|+|++|.++.+++ ..|.++++|++|+|++|.++++.|..|+.++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-----YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh-----HHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 46889999999999999988889999999999999999998754 3588999999999999999999998888886
Q ss_pred cccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEc
Q 037488 135 QSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDL 214 (628)
Q Consensus 135 ~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 214 (628)
.|+.|++++|.+.+..+..|+++++|+.|+|++|.+.+..|..|+.+++|++|++++|.+.+. .+..+++|+.|++
T Consensus 124 -~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l 199 (597)
T 3oja_B 124 -LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 199 (597)
T ss_dssp -TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEEC
T ss_pred -CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhhhc
Confidence 799999999999977777789999999999999999998888999999999999999999864 3567889999999
Q ss_pred cCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCC
Q 037488 215 GSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVI 294 (628)
Q Consensus 215 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 294 (628)
++|.+++. ...++|+.|++++|.++.+|..+. ++|+.|++++|.+++ +..+..+++|+.|+|++|.+++..
T Consensus 200 ~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~~--~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 200 SYNLLSTL-----AIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp CSSCCSEE-----ECCTTCSEEECCSSCCCEEECSCC--SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE
T ss_pred ccCccccc-----cCCchhheeeccCCcccccccccC--CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCC
Confidence 99998764 344689999999999998876553 689999999999986 367899999999999999999999
Q ss_pred ccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCCCcccc
Q 037488 295 PITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRN 374 (628)
Q Consensus 295 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~ 374 (628)
|..++.+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++++.. ...+..
T Consensus 271 ~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~ 346 (597)
T 3oja_B 271 YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK--LSTHHT 346 (597)
T ss_dssp SGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC--CCTTCC
T ss_pred HHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC--hhhcCC
Confidence 9999999999999999999985 56677889999999999999985 5667888999999999999998653 334667
Q ss_pred cccccccCCCcccC
Q 037488 375 FLAESFKGNELLCG 388 (628)
Q Consensus 375 ~~~~~~~~~~~~~~ 388 (628)
+....+.+|+..|.
T Consensus 347 L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 347 LKNLTLSHNDWDCN 360 (597)
T ss_dssp CSEEECCSSCEEHH
T ss_pred CCEEEeeCCCCCCh
Confidence 77788889988774
|
| >4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=294.76 Aligned_cols=188 Identities=20% Similarity=0.332 Sum_probs=143.5
Q ss_pred HHHhhcCCCcccccccCCccEEEEEEec------CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccC-CCcceeeeecc
Q 037488 422 LFQATNGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRH-RNLIKIISSCS 493 (628)
Q Consensus 422 l~~~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~ 493 (628)
+....++|...+.||+|+||+||+|++. .++.||||+++... ....+.|.+|+++|++++| ||||+++|+|.
T Consensus 59 wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~ 138 (353)
T 4ase_A 59 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACT 138 (353)
T ss_dssp HBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred cEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEE
Confidence 3345678899999999999999999853 24689999997543 3445779999999999965 89999999885
Q ss_pred CCC-cc--------------------------------------------------------------------------
Q 037488 494 NDD-FK-------------------------------------------------------------------------- 498 (628)
Q Consensus 494 ~~~-~~-------------------------------------------------------------------------- 498 (628)
... ..
T Consensus 139 ~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NILl 218 (353)
T 4ase_A 139 KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILL 218 (353)
T ss_dssp CTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEE
T ss_pred ecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCccceee
Confidence 421 00
Q ss_pred --------ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccH
Q 037488 499 --------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTL 569 (628)
Q Consensus 499 --------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~ 569 (628)
+|||+|+.+.........++.+||+.|||||++.++.|+.++|||||||++|||+| |+.||.+...... +
T Consensus 219 ~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~-~ 297 (353)
T 4ase_A 219 SEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE-F 297 (353)
T ss_dssp CGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH-H
T ss_pred CCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHH-H
Confidence 49999997655444334456689999999999999999999999999999999998 9999976432221 1
Q ss_pred HHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 570 KHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+.. ..++..|..+++++++++.+||+.||++||||.||
T Consensus 298 ~~~i~~------------------g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~ei 338 (353)
T 4ase_A 298 CRRLKE------------------GTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSEL 338 (353)
T ss_dssp HHHHHH------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHHHHc------------------CCCCCCCccCCHHHHHHHHHHcCcChhHCcCHHHH
Confidence 111111 11223445677889999999999999999998764
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-32 Score=274.68 Aligned_cols=287 Identities=18% Similarity=0.261 Sum_probs=137.9
Q ss_pred CCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhcccccc
Q 037488 58 KLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSM 137 (628)
Q Consensus 58 ~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l 137 (628)
+++.++++++.++.+ |..+. ++|+.|++++|.++.+++ ..+.++++|++|++++|.++++.|..|..++ .|
T Consensus 32 ~l~~l~~~~~~l~~l-p~~~~--~~l~~L~L~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L 102 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV-PKDLP--PDTALLDLQNNKITEIKD-----GDFKNLKNLHTLILINNKISKISPGAFAPLV-KL 102 (330)
T ss_dssp ETTEEECTTSCCCSC-CCSCC--TTCCEEECCSSCCCCBCT-----TTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TC
T ss_pred CCeEEEecCCCcccc-CccCC--CCCeEEECCCCcCCEeCh-----hhhccCCCCCEEECCCCcCCeeCHHHhcCCC-CC
Confidence 445555555555443 22222 345555555555554432 1244555555555555555555455555443 45
Q ss_pred ceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccc--cCCccccCCCCCCEEEcc
Q 037488 138 EIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEG--SIPDDLCRLAALFQLDLG 215 (628)
Q Consensus 138 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~ 215 (628)
+.|++++|.+.. +|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+.++++|++|+++
T Consensus 103 ~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 103 ERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 555555555542 232222 455555555555554444445555555555555555532 334445555555555555
Q ss_pred CCcCcccCCCCccCCCCCcEEEccCCcCCcC-CCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCC
Q 037488 216 SNKLSGFVPASFGNLTNLRSLHLGSNQITSI-PSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVI 294 (628)
Q Consensus 216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 294 (628)
+|.++.. |..+. ++|+.|++++|+++.+ |..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+
T Consensus 180 ~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 180 DTNITTI-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp SSCCCSC-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred CCccccC-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 5555432 22221 4555555555555543 334444555555555555555444444555555555555555554 34
Q ss_pred ccccCCCCCCCEEeCCCCcCcccCChhhcC------CCCCCEEECcCCcccc--cCchhhhcCCCCCEEEccCC
Q 037488 295 PITIGYLKDLQYLFLEYNRLQGSIPDSIGD------LINLKSLDLSNNNLSG--IIPISLEKLLDLKDINVSFN 360 (628)
Q Consensus 295 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~------l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~l~l~~N 360 (628)
|..+..+++|++|++++|++++..+..|.. ...++.|++++|.+.. +.|..|..+.+++.+++++|
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 444455555555555555555444443322 1344555555555432 33444555555555555554
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=276.91 Aligned_cols=287 Identities=21% Similarity=0.301 Sum_probs=179.3
Q ss_pred CCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhcccccc
Q 037488 58 KLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSM 137 (628)
Q Consensus 58 ~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l 137 (628)
+++.+++++|.++.+ |..+. ++|+.|++++|.++.+++ ..+.++++|++|++++|.++++.|..|..++ .|
T Consensus 34 ~l~~l~~~~~~l~~i-p~~~~--~~l~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L 104 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-PKEIS--PDTTLLDLQNNDISELRK-----DDFKGLQHLYALVLVNNKISKIHEKAFSPLR-KL 104 (332)
T ss_dssp ETTEEECCSSCCSSC-CSCCC--TTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSSCCCEECGGGSTTCT-TC
T ss_pred cCCEEECCCCCcccc-CCCCC--CCCeEEECCCCcCCccCH-----hHhhCCCCCcEEECCCCccCccCHhHhhCcC-CC
Confidence 566677777766654 33332 466777777776665533 2456667777777777777666666666664 56
Q ss_pred ceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCccc--ccCCccccCCCCCCEEEcc
Q 037488 138 EIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLE--GSIPDDLCRLAALFQLDLG 215 (628)
Q Consensus 138 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~ 215 (628)
+.|++++|.+.. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+. +..+..+..+ +|++|+++
T Consensus 105 ~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 105 QKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 777777776663 333332 56777777777776555555666777777777777664 2455556555 67777777
Q ss_pred CCcCcccCCCCccCCCCCcEEEccCCcCCcCC-CCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCC
Q 037488 216 SNKLSGFVPASFGNLTNLRSLHLGSNQITSIP-STLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVI 294 (628)
Q Consensus 216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 294 (628)
+|++++ +|..+. ++|+.|++++|.++.++ ..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+
T Consensus 181 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 181 EAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp SSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred CCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence 777665 333332 56667777777776654 45566667777777777776666666666777777777777766 45
Q ss_pred ccccCCCCCCCEEeCCCCcCcccCChhhcCC------CCCCEEECcCCccc--ccCchhhhcCCCCCEEEccCCc
Q 037488 295 PITIGYLKDLQYLFLEYNRLQGSIPDSIGDL------INLKSLDLSNNNLS--GIIPISLEKLLDLKDINVSFNK 361 (628)
Q Consensus 295 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l------~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~l~l~~N~ 361 (628)
|..+..+++|++|++++|++++..+..|... ..|+.|++++|.+. ++.|..|..+++|+.+++++|+
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5556666777777777777765555555432 45666777777665 4556666666777777776663
|
| >3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=285.53 Aligned_cols=177 Identities=19% Similarity=0.251 Sum_probs=129.0
Q ss_pred cCCCcccccccCCccEEEEEEe----cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI----HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~----~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
++|+..+.||+|+||+||+|+. .+++.||||+++... ......+.+|++++++++|||||++++++.+++..
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 5799999999999999999975 247899999997532 22234678999999999999999999987654321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+|+...... .
T Consensus 104 vmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~--~ 181 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHE--K 181 (304)
T ss_dssp EECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC-------C
T ss_pred EEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEecccccceeccCCC--c
Confidence 4999998654332 2
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
...+.+||+.|||||++.+..|+.++||||+||++|||+||++||.+... ....... ....
T Consensus 182 ~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~-----~~~~~~i------------~~~~-- 242 (304)
T 3ubd_A 182 KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDR-----KETMTMI------------LKAK-- 242 (304)
T ss_dssp CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHH------------HHCC--
T ss_pred cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCH-----HHHHHHH------------HcCC--
Confidence 23567899999999999999999999999999999999999999975321 1111111 1111
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
...|..+++++++|+.+||++||++|||+.
T Consensus 243 --~~~p~~~s~~~~~li~~~L~~dP~~R~ta~ 272 (304)
T 3ubd_A 243 --LGMPQFLSPEAQSLLRMLFKRNPANRLGAG 272 (304)
T ss_dssp --CCCCTTSCHHHHHHHHHHTCSSGGGSTTCS
T ss_pred --CCCCCcCCHHHHHHHHHHcccCHHHCCCCC
Confidence 122345677899999999999999999974
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=277.93 Aligned_cols=250 Identities=30% Similarity=0.503 Sum_probs=216.4
Q ss_pred CCCcEEEcccCCCCC--CCchHHhccccccceeeccC-CcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCC
Q 037488 110 KYLKYFSFSNNSLDG--ILPRAIGNLSQSMEIFWMHS-CNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQ 186 (628)
Q Consensus 110 ~~L~~L~l~~n~l~~--~~p~~~~~l~~~l~~l~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 186 (628)
.+++.|++++|.+.+ .+|..+..++ .|+.|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467777777777776 6677777765 577777774 777777888888889999999999998888888888999999
Q ss_pred EeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCC-CCcEEEccCCcCC-cCCCCccCCCCCcEEEcCCC
Q 037488 187 LLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLT-NLRSLHLGSNQIT-SIPSTLLNLKDILYLNLSSN 264 (628)
Q Consensus 187 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~l~~n 264 (628)
+|++++|++.+.+|..+..+++|++|++++|++++..|..+..++ +|+.|++++|+++ .+|..+..++ |++|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999999888888888999999999999999888888888887 8999999999988 5777777776 999999999
Q ss_pred CCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCch
Q 037488 265 FFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPI 344 (628)
Q Consensus 265 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 344 (628)
.+++..|..|..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|+.|++++|.+++.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99988888999999999999999999877666 78889999999999999989999999999999999999999988887
Q ss_pred hhhcCCCCCEEEccCCcce
Q 037488 345 SLEKLLDLKDINVSFNKLE 363 (628)
Q Consensus 345 ~~~~l~~L~~l~l~~N~l~ 363 (628)
. ..+++|+.+++++|+.-
T Consensus 287 ~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEE
T ss_pred C-ccccccChHHhcCCCCc
Confidence 6 78899999999999844
|
| >3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=279.22 Aligned_cols=191 Identities=19% Similarity=0.234 Sum_probs=128.5
Q ss_pred cCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----c---
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF-----K--- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-----~--- 498 (628)
.+|...+.||+|+||+||+|++. |+.||||+++..... ...+.+|+..+.+++|||||+++|+|.+++. .
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~~~-~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEEC-CEEEEEEEECccchh-hHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 34677789999999999999884 899999999754332 2233457777788999999999998864321 0
Q ss_pred ---------------------------------------------------------------------ccccccccccc
Q 037488 499 ---------------------------------------------------------------------ADFGMAKPLLK 509 (628)
Q Consensus 499 ---------------------------------------------------------------------~DFGla~~~~~ 509 (628)
+|||+|+....
T Consensus 81 Ey~~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~ 160 (303)
T 3hmm_A 81 DYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDS 160 (303)
T ss_dssp ECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEET
T ss_pred cCCCCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccC
Confidence 49999987643
Q ss_pred cCcc--cccccccccccccCccccccC------ccCcccchhhHhHHHHHHhhCCCCCCcccCCC----------ccHHH
Q 037488 510 EDQS--LIQTQTLATIGYMAPEYGREG------RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGE----------MTLKH 571 (628)
Q Consensus 510 ~~~~--~~~~~~~gt~~y~aPE~~~~~------~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~----------~~~~~ 571 (628)
.... ....+.+||++|||||++.+. .|+.++|||||||++|||+||++||....... .....
T Consensus 161 ~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~ 240 (303)
T 3hmm_A 161 ATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEE 240 (303)
T ss_dssp TTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHH
T ss_pred CCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHH
Confidence 3221 122345799999999998754 57899999999999999999988775422211 11122
Q ss_pred HHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 572 WVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+...... .......+. .....+++..+.+|+.+||+.||++||||.||
T Consensus 241 ~~~~~~~--------~~~rp~~p~-~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei 288 (303)
T 3hmm_A 241 MRKVVCE--------QKLRPNIPN-RWQSCEALRVMAKIMRECWYANGAARLTALRI 288 (303)
T ss_dssp HHHHHTT--------SCCCCCCCG-GGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHH
T ss_pred HHHHHhc--------ccCCCCCCc-cccchHHHHHHHHHHHHHcccCHhHCcCHHHH
Confidence 2111111 111001000 11123467789999999999999999999764
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-33 Score=276.59 Aligned_cols=180 Identities=21% Similarity=0.294 Sum_probs=122.8
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCC--------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDD-------- 496 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-------- 496 (628)
++|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+++|++++|||||++++++.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 4588899999999999999987 679999999997643 334567899999999999999999998753211
Q ss_pred -----------------cc--------------------------------------------------------ccccc
Q 037488 497 -----------------FK--------------------------------------------------------ADFGM 503 (628)
Q Consensus 497 -----------------~~--------------------------------------------------------~DFGl 503 (628)
.. +|||+
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~DFGl 164 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGL 164 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCCC
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEEEccCcc
Confidence 00 49999
Q ss_pred cccccccCcc----------cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHH
Q 037488 504 AKPLLKEDQS----------LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWV 573 (628)
Q Consensus 504 a~~~~~~~~~----------~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~ 573 (628)
|+.+...... ...++.+||+.|||||++.+..|+.++||||+||++|||++ ||.... ......
T Consensus 165 a~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~----~~~~~~ 237 (299)
T 4g31_A 165 VTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM----ERVRTL 237 (299)
T ss_dssp C--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH----HHHHHH
T ss_pred ceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc----HHHHHH
Confidence 9976432211 12234679999999999999999999999999999999996 775321 111111
Q ss_pred HhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 574 NDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
... ..... ++.+...++++.+|+.+||+.||++|||+.|+
T Consensus 238 ~~~------------~~~~~---p~~~~~~~~~~~~li~~~L~~dP~~Rps~~ei 277 (299)
T 4g31_A 238 TDV------------RNLKF---PPLFTQKYPCEYVMVQDMLSPSPMERPEAINI 277 (299)
T ss_dssp HHH------------HTTCC---CHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHH------------hcCCC---CCCCcccCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 100 00000 11223344567899999999999999998753
|
| >4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-32 Score=280.92 Aligned_cols=202 Identities=22% Similarity=0.191 Sum_probs=137.9
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
.++|...+.||+|+||+||+|+. .+|+.||||+++.. .....+.+.+|+++|+.++|||||++++++.....
T Consensus 53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~ 132 (398)
T 4b99_A 53 GDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK 132 (398)
T ss_dssp CSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred CCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence 35799999999999999999987 67999999999653 23456778999999999999999999987643210
Q ss_pred --c----------------------------------------------------------------ccccccccccccC
Q 037488 498 --K----------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 498 --~----------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
. +|||+|+.+....
T Consensus 133 ~~~ivmE~~~g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~ 212 (398)
T 4b99_A 133 SVYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSP 212 (398)
T ss_dssp CEEEEEECCSEEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC----
T ss_pred EEEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeecceeeecccCc
Confidence 0 4999999764321
Q ss_pred --cccccccccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC--ccceeec
Q 037488 512 --QSLIQTQTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI--SVMKVVD 586 (628)
Q Consensus 512 --~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 586 (628)
......+.+||++|||||++.+.. |+.++||||+||++|||++|++||.+.... ..+.......... .....+.
T Consensus 213 ~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~-~~l~~I~~~~g~p~~~~~~~~~ 291 (398)
T 4b99_A 213 AEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYV-HQLQLIMMVLGTPSPAVIQAVG 291 (398)
T ss_dssp ---CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHH-HHHHHHHHHHCCCCGGGTC---
T ss_pred cccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHH-HHHHHHHHhcCCCChHHhhhhh
Confidence 122335678999999999988754 699999999999999999999999753211 1111111111110 0000000
Q ss_pred -----ccccC---Cccc-chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 587 -----AHLLS---QEDK-HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 587 -----~~~~~---~~~~-~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..... .... ........+.++++|+.+||++||++|||+.|+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~ 342 (398)
T 4b99_A 292 AERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAA 342 (398)
T ss_dssp --CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred hhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHH
Confidence 00000 0000 001122456789999999999999999998763
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-32 Score=291.42 Aligned_cols=183 Identities=16% Similarity=0.163 Sum_probs=142.9
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.++|+..+.||+|+||.||+|+. .+|+.||+|++........+.+.+|+++|+.++|||||++++++.++...
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~ 235 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 235 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence 36799999999999999999987 67999999999876666667889999999999999999999876543211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+.+.... .
T Consensus 236 ~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~---~ 312 (573)
T 3uto_A 236 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ---S 312 (573)
T ss_dssp CCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTS---E
T ss_pred cCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCC---c
Confidence 4999999765432 2
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
..+.+||+.|||||++.+..|+.++||||+||++|||++|++||.+.... ..... ........
T Consensus 313 ~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~-----~~~~~------------i~~~~~~~ 375 (573)
T 3uto_A 313 VKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD-----ETLRN------------VKSCDWNM 375 (573)
T ss_dssp EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH-----HHHHH------------HHTTCCCC
T ss_pred eeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH-----HHHHH------------HHhCCCCC
Confidence 34568999999999999999999999999999999999999999753211 11111 11111111
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++++|+.+||+.||++|||+.|+
T Consensus 376 ~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~ 408 (573)
T 3uto_A 376 DDSAFSGISEDGKDFIRKLLLADPNTRMTIHQA 408 (573)
T ss_dssp CSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred CcccccCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 222334567789999999999999999998753
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-33 Score=298.75 Aligned_cols=331 Identities=19% Similarity=0.174 Sum_probs=209.3
Q ss_pred CCCCEEEccCCccee----cCCccccCCCCCCEEeccCCcccccCcccc-CCCC----CCCEEEccCccccCCCCCCccc
Q 037488 33 QNLEELLLWGNNFSG----TIPSFIFNASKLSRLELQMNSFYGFIPNTF-GNLR----NLNRLGLNDNYLTSSTPKLNFL 103 (628)
Q Consensus 33 ~~L~~L~ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f-~~l~----~L~~L~L~~N~l~~~~~~~~~~ 103 (628)
++|++|+|++|.++. .++..+..+++|++|+|++|.+....+..+ ..+. +|++|++++|.++..... ...
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~-~l~ 106 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG-VLS 106 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH-HHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH-HHH
Confidence 355566666666553 234556666777777777777655433322 2344 577777777766532100 012
Q ss_pred ccccCCCCCcEEEcccCCCCCCCchHHhcc----ccccceeeccCCcccccC----CccccCCCCCCEEEccCCcCCccc
Q 037488 104 SSLSNCKYLKYFSFSNNSLDGILPRAIGNL----SQSMEIFWMHSCNISGGI----PEEISNLTNLIAIYLGGNKLNGSI 175 (628)
Q Consensus 104 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l----~~~l~~l~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~ 175 (628)
..+.++++|++|++++|.+.+..+..+... ...|+.|++++|.+++.. +..+..+++|+.|++++|.+....
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 345666777777777777654444433321 124677777777666532 445566778888888888776543
Q ss_pred ccccc-----CCCCCCEeecccCccccc----CCccccCCCCCCEEEccCCcCcccC-----CCCccCCCCCcEEEccCC
Q 037488 176 PIALG-----KLQKLQLLNLEYNQLEGS----IPDDLCRLAALFQLDLGSNKLSGFV-----PASFGNLTNLRSLHLGSN 241 (628)
Q Consensus 176 p~~~~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n 241 (628)
+..+. .+++|++|++++|.++.. ++..+..+++|++|++++|.+.... +..+..+++|+.|++++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 33332 255788888888877653 3555667778888888888776432 223345678888888888
Q ss_pred cCCc-----CCCCccCCCCCcEEEcCCCCCcCCCCCccc-----CCccccEEEcCCCcCCCC----CccccCCCCCCCEE
Q 037488 242 QITS-----IPSTLLNLKDILYLNLSSNFFTGPLPLEIG-----NLKVLIKIDLSMNNFSGV----IPITIGYLKDLQYL 307 (628)
Q Consensus 242 ~l~~-----lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L 307 (628)
.++. ++..+..+++|++|++++|.++...+..+. ..++|+.|++++|.+++. ++..+..+++|++|
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 8776 566666677888888888877543332222 225788888888887754 34455566788888
Q ss_pred eCCCCcCcccCChhhcC-----CCCCCEEECcCCcccc----cCchhhhcCCCCCEEEccCCccee
Q 037488 308 FLEYNRLQGSIPDSIGD-----LINLKSLDLSNNNLSG----IIPISLEKLLDLKDINVSFNKLEG 364 (628)
Q Consensus 308 ~l~~n~~~~~~~~~~~~-----l~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~l~l~~N~l~~ 364 (628)
++++|++++..+..+.. .++|+.|++++|.+++ .++..+..+++|++|++++|++++
T Consensus 347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 88888876554444432 5678888888888875 556677778888888888887764
|
| >4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-31 Score=267.54 Aligned_cols=137 Identities=19% Similarity=0.218 Sum_probs=106.2
Q ss_pred HhhcCCCcccccccCCccEEEEEEe----cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI----HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 498 (628)
...+.|+..+.||+|+||+||+|+. .+++.||||++.... ....+.+|+++++.+ +|||||++++++.+++..
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~ 95 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHV 95 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEE
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEE
Confidence 3467899999999999999999975 247899999986543 234578999999998 699999998876543321
Q ss_pred ----------------------------------------------------------------ccccccccccccCc--
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQ-- 512 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~-- 512 (628)
+|||+|+.......
T Consensus 96 ~lvmE~~~g~~L~~~~~~l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~ 175 (361)
T 4f9c_A 96 VIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIEL 175 (361)
T ss_dssp EEEEECCCCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGG
T ss_pred EEEEeCCCcccHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCccccc
Confidence 49999986532210
Q ss_pred ------------------------ccccccccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcc
Q 037488 513 ------------------------SLIQTQTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEI 562 (628)
Q Consensus 513 ------------------------~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~ 562 (628)
....++.+||++|||||++.+.+ |+.++||||+||++|||+||+.||...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~ 250 (361)
T 4f9c_A 176 LKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKA 250 (361)
T ss_dssp GGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred cccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCC
Confidence 01123457999999999998764 899999999999999999999999643
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-32 Score=293.74 Aligned_cols=362 Identities=19% Similarity=0.152 Sum_probs=279.1
Q ss_pred CcccCCCcccCCChh-ccCCCCCCEEecCccCC---------------CCCCEEEccCCcceecCCccc-cCCC----CC
Q 037488 1 MAFSFNKLVGVVPTT-IFNVSTLNSLYLQNVQL---------------QNLEELLLWGNNFSGTIPSFI-FNAS----KL 59 (628)
Q Consensus 1 l~ls~N~l~~~~p~~-~~~l~~L~~L~l~~n~l---------------~~L~~L~ls~N~l~~~~p~~~-~~l~----~L 59 (628)
|||++|+++...... +..+++|++|++++|.+ ++|++|+|++|.++...+..+ ..++ +|
T Consensus 8 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L 87 (461)
T 1z7x_W 8 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI 87 (461)
T ss_dssp EEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCC
T ss_pred hhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCce
Confidence 589999998765444 88899999999999873 689999999999986544433 3455 79
Q ss_pred CEEeccCCcccc----cCccccCCCCCCCEEEccCccccCCCCCCccccc-ccCCCCCcEEEcccCCCCCCC----chHH
Q 037488 60 SRLELQMNSFYG----FIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSS-LSNCKYLKYFSFSNNSLDGIL----PRAI 130 (628)
Q Consensus 60 ~~L~L~~N~l~~----~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~----p~~~ 130 (628)
++|+|++|+++. .++..|..+++|++|++++|.++...... .... ....++|++|++++|.+++.. +..+
T Consensus 88 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 88 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL-LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH-HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH-HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 999999999984 45888999999999999999987431100 0011 234678999999999998754 4445
Q ss_pred hccccccceeeccCCcccccCCcccc-----CCCCCCEEEccCCcCCcc----ccccccCCCCCCEeecccCcccccC--
Q 037488 131 GNLSQSMEIFWMHSCNISGGIPEEIS-----NLTNLIAIYLGGNKLNGS----IPIALGKLQKLQLLNLEYNQLEGSI-- 199 (628)
Q Consensus 131 ~~l~~~l~~l~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~-- 199 (628)
..++ .|+.|++++|.+....+..+. ..++|+.|++++|.+++. ++..+..+++|++|++++|++....
T Consensus 167 ~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 167 RAKP-DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHCT-TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred hhCC-CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 5555 799999999998765444443 367999999999999864 5677888999999999999987532
Q ss_pred ---CccccCCCCCCEEEccCCcCccc----CCCCccCCCCCcEEEccCCcCCcC-----CCCcc-CCCCCcEEEcCCCCC
Q 037488 200 ---PDDLCRLAALFQLDLGSNKLSGF----VPASFGNLTNLRSLHLGSNQITSI-----PSTLL-NLKDILYLNLSSNFF 266 (628)
Q Consensus 200 ---p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~l-----p~~~~-~l~~L~~L~l~~n~l 266 (628)
+..+..+++|++|++++|.++.. ++..+..+++|++|++++|.++.. ...+. ..++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 22234689999999999999864 466677899999999999998642 22222 236999999999999
Q ss_pred cCC----CCCcccCCccccEEEcCCCcCCCCCccccCC-----CCCCCEEeCCCCcCcc----cCChhhcCCCCCCEEEC
Q 037488 267 TGP----LPLEIGNLKVLIKIDLSMNNFSGVIPITIGY-----LKDLQYLFLEYNRLQG----SIPDSIGDLINLKSLDL 333 (628)
Q Consensus 267 ~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l 333 (628)
++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|++++ .+|..+..+++|+.|++
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence 865 3455677899999999999987654443332 6799999999999986 67888889999999999
Q ss_pred cCCcccccCchhhh-----cCCCCCEEEccCCccee
Q 037488 334 SNNNLSGIIPISLE-----KLLDLKDINVSFNKLEG 364 (628)
Q Consensus 334 ~~N~l~~~~~~~~~-----~l~~L~~l~l~~N~l~~ 364 (628)
++|.+++.....+. ...+|+.|++.++.+..
T Consensus 406 ~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 99999764322222 24468889888776553
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=260.32 Aligned_cols=280 Identities=18% Similarity=0.205 Sum_probs=173.4
Q ss_pred CCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccc
Q 037488 55 NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLS 134 (628)
Q Consensus 55 ~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 134 (628)
.++.....++++|.++.++ ..+. ++|++|++++|.++.+++ ..+.++++|++|++++|.++++.|..
T Consensus 29 ~C~~~~~c~~~~~~l~~iP-~~~~--~~L~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~----- 95 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIP-SGLT--EAVKSLDLSNNRITYISN-----SDLQRCVNLQALVLTSNGINTIEEDS----- 95 (353)
T ss_dssp EECTTSEEECCSTTCSSCC-TTCC--TTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTSCCCEECTTT-----
T ss_pred CCCCCeEeeCCCCCccccc-cccc--ccCcEEECCCCcCcccCH-----HHhccCCCCCEEECCCCccCccCHhh-----
Confidence 3555566778888887653 3333 477888888887776543 24677777888888777776554444
Q ss_pred cccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCC-ccccCCCCCCEEE
Q 037488 135 QSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIP-DDLCRLAALFQLD 213 (628)
Q Consensus 135 ~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~ 213 (628)
|.++++|++|++++|++++..+..+..+++|++|++++|++.+..+ ..+..+++|++|+
T Consensus 96 --------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 96 --------------------FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155 (353)
T ss_dssp --------------------TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred --------------------cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence 4445555555555555554333335555555555555555553222 2455555555555
Q ss_pred ccCC-cCcccCCCCccCCCCCcEEEccCCcCCcC-CCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCC
Q 037488 214 LGSN-KLSGFVPASFGNLTNLRSLHLGSNQITSI-PSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFS 291 (628)
Q Consensus 214 L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (628)
+++| .+....+..|..+++|+.|++++|.++.+ |..+..+++|++|++++|.++...+..+..+++|+.|++++|.++
T Consensus 156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 5555 34444445555555555555555555543 445555555555555555554333333344556666666666665
Q ss_pred CCCcccc---CCCCCCCEEeCCCCcCcc----cCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCccee
Q 037488 292 GVIPITI---GYLKDLQYLFLEYNRLQG----SIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEG 364 (628)
Q Consensus 292 ~~~p~~~---~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~ 364 (628)
+..+..+ .....++.++++++.+.+ .+|..+..+++|+.|++++|+++.+.+..|..+++|+.|++++|++.+
T Consensus 236 ~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp TCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 5443322 234567777777777764 467788899999999999999986655557889999999999999988
Q ss_pred cCC
Q 037488 365 EIP 367 (628)
Q Consensus 365 ~~p 367 (628)
.+|
T Consensus 316 ~~~ 318 (353)
T 2z80_A 316 SCP 318 (353)
T ss_dssp CHH
T ss_pred cCC
Confidence 765
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-29 Score=250.41 Aligned_cols=249 Identities=20% Similarity=0.243 Sum_probs=171.8
Q ss_pred CEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccce
Q 037488 60 SRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEI 139 (628)
Q Consensus 60 ~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~ 139 (628)
+.++.+++.++.++. .+. ++|+.|++++|.++.+++. .|.++++|++|++++|.++...
T Consensus 10 ~~l~c~~~~l~~ip~-~~~--~~l~~L~L~~n~l~~i~~~-----~~~~l~~L~~L~L~~n~l~~~~------------- 68 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GIP--SSATRLELESNKLQSLPHG-----VFDKLTQLTKLSLSSNGLSFKG------------- 68 (306)
T ss_dssp TEEECCSSCCSSCCS-CCC--TTCCEEECCSSCCCCCCTT-----TTTTCTTCSEEECCSSCCCEEE-------------
T ss_pred CEEEcCCCCcccCCC-CCC--CCCCEEECCCCccCccCHh-----HhhccccCCEEECCCCccCccc-------------
Confidence 467778887776543 332 5788888888888766542 3677788888888888775221
Q ss_pred eeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCC-ccccCCCCCCEEEccCCc
Q 037488 140 FWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIP-DDLCRLAALFQLDLGSNK 218 (628)
Q Consensus 140 l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~ 218 (628)
..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.
T Consensus 69 ----------~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 69 ----------CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp ----------EEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred ----------CcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence 11233445677777888877776 455567777888888888887775544 467777778888888887
Q ss_pred CcccCCCCccCCCCCcEEEccCCcCCc--CCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCcc
Q 037488 219 LSGFVPASFGNLTNLRSLHLGSNQITS--IPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPI 296 (628)
Q Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 296 (628)
+.+..+..|..+++|++|++++|.+++ +|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+.
T Consensus 138 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 777777777777777777777777765 566666777777777777777766666677777777777777777666555
Q ss_pred ccCCCCCCCEEeCCCCcCcccCChhhcCCC-CCCEEECcCCcccc
Q 037488 297 TIGYLKDLQYLFLEYNRLQGSIPDSIGDLI-NLKSLDLSNNNLSG 340 (628)
Q Consensus 297 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~N~l~~ 340 (628)
.+..+++|++|++++|++++..|..+..++ +|+.|++++|.++.
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 666666677777777776666666666663 66666666666654
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=252.66 Aligned_cols=249 Identities=23% Similarity=0.285 Sum_probs=183.9
Q ss_pred CEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEE
Q 037488 36 EELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYF 115 (628)
Q Consensus 36 ~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L 115 (628)
+.++++++.++. +|..+ .++|++|+|++|+++.+.+..|.++++|+.|++++|.++.... ....+..+++|++|
T Consensus 10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~~~L~~L 83 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC---CSQSDFGTTSLKYL 83 (306)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE---EEHHHHSCSCCCEE
T ss_pred CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC---cccccccccccCEE
Confidence 467788888874 44433 3689999999999998877788999999999999998875321 01245567888888
Q ss_pred EcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCcccc-ccccCCCCCCEeecccCc
Q 037488 116 SFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIP-IALGKLQKLQLLNLEYNQ 194 (628)
Q Consensus 116 ~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~ 194 (628)
++++|.+.. +|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.
T Consensus 84 ~Ls~n~i~~--------------------------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 84 DLSFNGVIT--------------------------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp ECCSCSEEE--------------------------EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCcccc--------------------------ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence 888887652 12345566777777777777765444 457777777777777777
Q ss_pred ccccCCccccCCCCCCEEEccCCcCcc-cCCCCccCCCCCcEEEccCCcCCcC-CCCccCCCCCcEEEcCCCCCcCCCCC
Q 037488 195 LEGSIPDDLCRLAALFQLDLGSNKLSG-FVPASFGNLTNLRSLHLGSNQITSI-PSTLLNLKDILYLNLSSNFFTGPLPL 272 (628)
Q Consensus 195 l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~ 272 (628)
+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+++..+.
T Consensus 138 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 777777777777777777777777765 4677777777888888888877775 45666777788888888887776666
Q ss_pred cccCCccccEEEcCCCcCCCCCccccCCC-CCCCEEeCCCCcCcc
Q 037488 273 EIGNLKVLIKIDLSMNNFSGVIPITIGYL-KDLQYLFLEYNRLQG 316 (628)
Q Consensus 273 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~l~~n~~~~ 316 (628)
.+..+++|+.|++++|.+++..|..+..+ ++|++|++++|++++
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 77778888888888888887777777776 478888888888764
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=256.27 Aligned_cols=214 Identities=24% Similarity=0.293 Sum_probs=119.6
Q ss_pred CCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCC
Q 037488 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNL 230 (628)
Q Consensus 151 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 230 (628)
.+..|.++++|+.|+|++|.+.+..+..|.++++|++|+|++|+++...+..|..+++|++|+|++|+++...+..|..+
T Consensus 80 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 159 (440)
T 3zyj_A 80 KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159 (440)
T ss_dssp CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC
T ss_pred CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhC
Confidence 33444445555555555555554444445555555555555555554444445555555555555555554444455555
Q ss_pred CCCcEEEccC-CcCCcCCC-CccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEe
Q 037488 231 TNLRSLHLGS-NQITSIPS-TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLF 308 (628)
Q Consensus 231 ~~L~~L~L~~-n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 308 (628)
++|+.|++++ |.+..++. .+..+++|++|++++|.++.. | .+..+++|+.|+|++|.+++..|..|..+++|+.|+
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEE
Confidence 5555555554 33334433 344455555555555555532 2 245556666666666666655566666666666666
Q ss_pred CCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecC
Q 037488 309 LEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEI 366 (628)
Q Consensus 309 l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~ 366 (628)
+++|++++..+..|.++++|+.|+|++|+++++.+..|..+++|+.|++++|++.+..
T Consensus 238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred CCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 6666666666666666666666666666666666666666666666666666665543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=258.17 Aligned_cols=279 Identities=18% Similarity=0.170 Sum_probs=196.8
Q ss_pred CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCC
Q 037488 32 LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKY 111 (628)
Q Consensus 32 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~ 111 (628)
++.....++++|.++. +|..+. ++|++|++++|+++++.+..|.++++|+.|++++|.++.+.+ ..+.++++
T Consensus 30 C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~ 101 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE-----DSFSSLGS 101 (353)
T ss_dssp ECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-----TTTTTCTT
T ss_pred CCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH-----hhcCCCCC
Confidence 4555678889999884 455443 589999999999999888899999999999999999987654 35788999
Q ss_pred CcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCcccc-ccccCCCCCCEeec
Q 037488 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIP-IALGKLQKLQLLNL 190 (628)
Q Consensus 112 L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L 190 (628)
|++|++++|.++++.+..| .++++|++|++++|++.+..+ ..+..+++|++|++
T Consensus 102 L~~L~Ls~n~l~~~~~~~~-------------------------~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l 156 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWF-------------------------KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156 (353)
T ss_dssp CCEEECCSSCCSSCCHHHH-------------------------TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred CCEEECCCCcCCcCCHhHh-------------------------CCCccCCEEECCCCCCcccCchhhhccCCCCcEEEC
Confidence 9999999999886544434 345556666666666653322 24566666666666
Q ss_pred ccC-cccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCcc-CCCCCcEEEcCCCCCcC
Q 037488 191 EYN-QLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLL-NLKDILYLNLSSNFFTG 268 (628)
Q Consensus 191 ~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~l~~n~l~~ 268 (628)
++| .+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.++.+|..+. .+++|++|++++|.+++
T Consensus 157 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred CCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 666 3554555566666666666666666666666666666677777777766666654433 35666777777776665
Q ss_pred CCCCcc---cCCccccEEEcCCCcCCC----CCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCccccc
Q 037488 269 PLPLEI---GNLKVLIKIDLSMNNFSG----VIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGI 341 (628)
Q Consensus 269 ~~~~~~---~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 341 (628)
..+..+ .....++.++++++.+++ .+|..+..+++|++|++++|+++...+..|..+++|+.|++++|.+.+.
T Consensus 237 ~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 444332 234567777888877765 3566778899999999999999854444468999999999999999865
Q ss_pred Cc
Q 037488 342 IP 343 (628)
Q Consensus 342 ~~ 343 (628)
.|
T Consensus 317 ~~ 318 (353)
T 2z80_A 317 CP 318 (353)
T ss_dssp HH
T ss_pred CC
Confidence 44
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-28 Score=256.14 Aligned_cols=230 Identities=22% Similarity=0.250 Sum_probs=180.2
Q ss_pred ccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEcc
Q 037488 136 SMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLG 215 (628)
Q Consensus 136 ~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 215 (628)
.++.|++++|++.+..+..|.++++|+.|+|++|.+.+..+..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 45555555555555566677777888888888888877777778888888888888888876666667778888888888
Q ss_pred CCcCcccCCCCccCCCCCcEEEccC-CcCCcCCC-CccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCC
Q 037488 216 SNKLSGFVPASFGNLTNLRSLHLGS-NQITSIPS-TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGV 293 (628)
Q Consensus 216 ~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 293 (628)
+|+++...+..|..+++|+.|++++ |.+..++. .+..+++|++|++++|.+++. | .+..+++|+.|+|++|.+++.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEE
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCccc
Confidence 8888777777788888888888877 55666655 466778888888888888754 3 477788888888888888888
Q ss_pred CccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCC
Q 037488 294 IPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIP 367 (628)
Q Consensus 294 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p 367 (628)
.|..|..+++|+.|++++|++++..+..|..+++|+.|++++|+++++.+..|..+++|+.|++++|++.+...
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 88888888888888888888888888888888888888888888888777778888888889998888876553
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=257.34 Aligned_cols=246 Identities=24% Similarity=0.242 Sum_probs=197.5
Q ss_pred CEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCE
Q 037488 84 NRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIA 163 (628)
Q Consensus 84 ~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~ 163 (628)
+.++.+++.++.+|..+ .++|++|+|++|.++++.|..|..++ .|+.|++++|.+.+..+..|.++++|+.
T Consensus 57 ~~v~c~~~~l~~iP~~~--------~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 127 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI--------PSNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNT 127 (452)
T ss_dssp CEEECCSSCCSSCCSCC--------CTTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cEEEECCCCcCccCCCC--------CCCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCE
Confidence 44555555555544321 13555666666666555555555554 4666666666666666677888889999
Q ss_pred EEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccC-CcCcccCCCCccCCCCCcEEEccCCc
Q 037488 164 IYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGS-NKLSGFVPASFGNLTNLRSLHLGSNQ 242 (628)
Q Consensus 164 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (628)
|+|++|++++..+..|..+++|++|+|++|++....+..|.++++|++|++++ |.+....+..|..+++|+.|+|++|+
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 99999999877777788899999999999999877777888999999999998 55665556678999999999999999
Q ss_pred CCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhh
Q 037488 243 ITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSI 322 (628)
Q Consensus 243 l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 322 (628)
++.+| .+..+++|++|++++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|
T Consensus 208 l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 208 IKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp CSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred ccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 99887 47788999999999999998888899999999999999999998888889999999999999999998778888
Q ss_pred cCCCCCCEEECcCCccc
Q 037488 323 GDLINLKSLDLSNNNLS 339 (628)
Q Consensus 323 ~~l~~L~~L~l~~N~l~ 339 (628)
..+++|+.|++++|.+.
T Consensus 287 ~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEccCCCcC
Confidence 89999999999999875
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-28 Score=254.03 Aligned_cols=249 Identities=23% Similarity=0.241 Sum_probs=228.4
Q ss_pred CCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCC
Q 037488 81 RNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTN 160 (628)
Q Consensus 81 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~ 160 (628)
...+.++.+++.++.+|..+ .++++.|+|++|+++++.+..|..++ .|+.|++++|.+.+..+..|.++++
T Consensus 43 ~~~~~v~c~~~~l~~iP~~~--------~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 43 NQFSKVICVRKNLREVPDGI--------STNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLAN 113 (440)
T ss_dssp TTSCEEECCSCCCSSCCSCC--------CTTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSS
T ss_pred CCCCEEEeCCCCcCcCCCCC--------CCCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCcc
Confidence 34678999999999887643 26899999999999999889998886 7999999999999988899999999
Q ss_pred CCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccC-CcCcccCCCCccCCCCCcEEEcc
Q 037488 161 LIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGS-NKLSGFVPASFGNLTNLRSLHLG 239 (628)
Q Consensus 161 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~ 239 (628)
|+.|+|++|+++...+..|..+++|++|+|++|++....+..|.++++|++|++++ |.+....+..|.++++|+.|+|+
T Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 99999999999977777899999999999999999988888899999999999999 55665666689999999999999
Q ss_pred CCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCC
Q 037488 240 SNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIP 319 (628)
Q Consensus 240 ~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 319 (628)
+|.++.+|. +..+++|++|++++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++++..+
T Consensus 194 ~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 194 MCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp TSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred CCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 999999984 7789999999999999999989999999999999999999999999999999999999999999998888
Q ss_pred hhhcCCCCCCEEECcCCccc
Q 037488 320 DSIGDLINLKSLDLSNNNLS 339 (628)
Q Consensus 320 ~~~~~l~~L~~L~l~~N~l~ 339 (628)
..|..+++|+.|++++|.+.
T Consensus 273 ~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTSSCTTCCEEECCSSCEE
T ss_pred hHhccccCCCEEEcCCCCcc
Confidence 88999999999999999985
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=246.81 Aligned_cols=195 Identities=23% Similarity=0.272 Sum_probs=119.7
Q ss_pred CccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCC
Q 037488 152 PEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLT 231 (628)
Q Consensus 152 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 231 (628)
|..++.+++|++|+|++|.+. .+|..++.+++|++|++++|++.+.+|..+... ..+..|..++
T Consensus 120 p~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~ 183 (328)
T 4fcg_A 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST---------------DASGEHQGLV 183 (328)
T ss_dssp CSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE---------------C-CCCEEEST
T ss_pred hHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc---------------cchhhhccCC
Confidence 334444455555555555554 344445555555555555544444444433220 0011233466
Q ss_pred CCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCC
Q 037488 232 NLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEY 311 (628)
Q Consensus 232 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 311 (628)
+|++|++++|.++.+|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+.+.+|..++.+++|++|++++
T Consensus 184 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp TCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred CCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 6777777777766666666666677777777777664 334566677777777777777666777777777777777777
Q ss_pred CcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcce
Q 037488 312 NRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLE 363 (628)
Q Consensus 312 n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~ 363 (628)
|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.+++..|.+.
T Consensus 263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 7776677777777777777777777777777777777777777777665443
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-30 Score=273.03 Aligned_cols=224 Identities=21% Similarity=0.194 Sum_probs=172.2
Q ss_pred CchHHhcccc---ccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCcc
Q 037488 126 LPRAIGNLSQ---SMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDD 202 (628)
Q Consensus 126 ~p~~~~~l~~---~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 202 (628)
+|..+..+.. .++.|++++|.+.+..|..|..+++|+.|+|++|.+++..| +..+++|++|+|++|.+.+..+
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-- 97 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-- 97 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE--
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC--
Confidence 4555554432 68888888888888777888888888888888888876555 7888888888888888875432
Q ss_pred ccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcC-CCCccCCCCCcEEEcCCCCCcCCCCCccc-CCccc
Q 037488 203 LCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSI-PSTLLNLKDILYLNLSSNFFTGPLPLEIG-NLKVL 280 (628)
Q Consensus 203 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L 280 (628)
.++|+.|++++|.+++..+.. +++|+.|+|++|.++.+ |..+..+++|++|++++|.+++..|..+. .+++|
T Consensus 98 ---~~~L~~L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 98 ---GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp ---CTTCCEEECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred ---CCCcCEEECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 278888888888888765543 46788888888888876 45667788888888888888877777665 68888
Q ss_pred cEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCC
Q 037488 281 IKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFN 360 (628)
Q Consensus 281 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N 360 (628)
+.|+|++|.+++..+ ...+++|++|+|++|.+++.+| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|
T Consensus 172 ~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 172 EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred cEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence 888888888876533 2357888888888888886444 47788888888888888886 4556777888888888888
Q ss_pred cce
Q 037488 361 KLE 363 (628)
Q Consensus 361 ~l~ 363 (628)
++.
T Consensus 248 ~l~ 250 (487)
T 3oja_A 248 GFH 250 (487)
T ss_dssp CBC
T ss_pred CCc
Confidence 877
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=246.62 Aligned_cols=207 Identities=25% Similarity=0.303 Sum_probs=178.7
Q ss_pred CCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEE
Q 037488 158 LTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLH 237 (628)
Q Consensus 158 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 237 (628)
.+.++.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467788888888887 56767777888888888888887 67777888888888888888887 5677788888888888
Q ss_pred ccCCcC-CcCCCCcc---------CCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEE
Q 037488 238 LGSNQI-TSIPSTLL---------NLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYL 307 (628)
Q Consensus 238 L~~n~l-~~lp~~~~---------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 307 (628)
+++|.+ ..+|..+. .+++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..++.+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 887554 45776654 4999999999999999 678889999999999999999996 55578999999999
Q ss_pred eCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCC
Q 037488 308 FLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPRE 369 (628)
Q Consensus 308 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~ 369 (628)
++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 99999999999999999999999999999999999999999999999999999999999864
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=255.83 Aligned_cols=206 Identities=29% Similarity=0.483 Sum_probs=154.5
Q ss_pred hhhHHHHHhhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCC
Q 037488 417 LTYLELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD 496 (628)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 496 (628)
++..++...+++|...+.||+|+||.||+|+..+|+.||||++........+.+.+|+++++.++||||++++++|..++
T Consensus 29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 108 (321)
T 2qkw_B 29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERN 108 (321)
T ss_dssp -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT
T ss_pred ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC
Confidence 33444556788999999999999999999998889999999987665556778999999999999999999999875432
Q ss_pred cc----------------------------------------------------------------------cccccccc
Q 037488 497 FK----------------------------------------------------------------------ADFGMAKP 506 (628)
Q Consensus 497 ~~----------------------------------------------------------------------~DFGla~~ 506 (628)
.. +|||+++.
T Consensus 109 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~ 188 (321)
T 2qkw_B 109 EMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKK 188 (321)
T ss_dssp CCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCEE
T ss_pred eEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeecccccc
Confidence 11 39999986
Q ss_pred ccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCC-ccHHHHHHhhcC-Ccccee
Q 037488 507 LLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGE-MTLKHWVNDLLP-ISVMKV 584 (628)
Q Consensus 507 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~-~~~~~~~~~~~~-~~~~~~ 584 (628)
..............||+.|+|||++.++.++.++|||||||++|||+||+.||....+.. .....|...... ......
T Consensus 189 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (321)
T 2qkw_B 189 GTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQI 268 (321)
T ss_dssp CSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSS
T ss_pred cccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHh
Confidence 543322223344569999999999999999999999999999999999999997654433 334444322211 122222
Q ss_pred ecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 585 VDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+++.. ....+..++.++.+++.+||+.||++|||+.||
T Consensus 269 ~~~~~------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~el 306 (321)
T 2qkw_B 269 VDPNL------ADKIRPESLRKFGDTAVKCLALSSEDRPSMGDV 306 (321)
T ss_dssp SSSSC------TTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred cChhh------ccccCHHHHHHHHHHHHHHcCCCcccCcCHHHH
Confidence 22221 122345678889999999999999999998764
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-27 Score=255.72 Aligned_cols=269 Identities=23% Similarity=0.277 Sum_probs=191.9
Q ss_pred CCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCC
Q 037488 33 QNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYL 112 (628)
Q Consensus 33 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L 112 (628)
.++++|++++|.++ .+|..+. ++|+.|+|++|.++.+.+ .+++|+.|+|++|+|+.++. .+++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---------~l~~L 103 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---------LPPGL 103 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---------CCTTC
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---------CCCCC
Confidence 35888899999988 4565554 789999999999987644 57899999999999887643 56889
Q ss_pred cEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeeccc
Q 037488 113 KYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEY 192 (628)
Q Consensus 113 ~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 192 (628)
++|++++|.++++.+ ....|+.|++++|.++. +|.. +++|+.|++++|++++ +|. .+.+|+.|++++
T Consensus 104 ~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~ 170 (622)
T 3g06_A 104 LELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYN 170 (622)
T ss_dssp CEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCC
Confidence 999999999886543 23467777787777775 3432 4777888888887774 343 245677788888
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCC
Q 037488 193 NQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPL 272 (628)
Q Consensus 193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 272 (628)
|++++ +| ..+++|+.|++++|+++++ |.. +++|+.|++++|.++.+|.. +++|++|++++|.+++ +|
T Consensus 171 N~l~~-l~---~~~~~L~~L~Ls~N~l~~l-~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp- 237 (622)
T 3g06_A 171 NQLTS-LP---MLPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP- 237 (622)
T ss_dssp SCCSC-CC---CCCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC-
T ss_pred CCCCC-Cc---ccCCCCcEEECCCCCCCCC-CCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC-
Confidence 87774 44 3457777888888877753 332 36777788888887777753 3677778888877775 33
Q ss_pred cccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCC
Q 037488 273 EIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLL 350 (628)
Q Consensus 273 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 350 (628)
..+++|+.|++++|.++. +|. .+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+++..|..+..+.
T Consensus 238 --~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 238 --VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp --CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred --CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 345677777788777774 333 4567777777777777 5677777777777777777777777666655443
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-28 Score=238.67 Aligned_cols=209 Identities=28% Similarity=0.309 Sum_probs=139.7
Q ss_pred CCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCc-CcccCCCCccCCCCCcEEE
Q 037488 159 TNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNK-LSGFVPASFGNLTNLRSLH 237 (628)
Q Consensus 159 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 237 (628)
++|+.|++++|.+++..+..|..+++|++|++++|.+.+..|..|.++++|++|++++|. +....+..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 456666666666665555556666666666666666665556666666666666666665 5555556666666666666
Q ss_pred ccCCcCCcC-CCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcc
Q 037488 238 LGSNQITSI-PSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQG 316 (628)
Q Consensus 238 L~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 316 (628)
+++|.++.+ |..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 666666665 3345556666666666666666555566677777777777777766555566677777777777777776
Q ss_pred cCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCC
Q 037488 317 SIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIP 367 (628)
Q Consensus 317 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p 367 (628)
..|..+..+++|+.|++++|.++++.+..+..+++|+.|++++|++.+..+
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 667777777777777777777776666667777777777777777765543
|
| >3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=269.72 Aligned_cols=178 Identities=21% Similarity=0.239 Sum_probs=132.1
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHH---HHHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNF---DIECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~---~~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
.++|...+.||+|+||.||+|+. .+|+.||||+++... ......+ .+++++++.++|||||++++++.+.+..
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 46899999999999999999987 679999999997532 1112223 3446778888999999999877654321
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+|+.+...
T Consensus 268 ylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~-- 345 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK-- 345 (689)
T ss_dssp EEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC--
T ss_pred EEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEecccceeeecCCC--
Confidence 499999876433
Q ss_pred ccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 513 SLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
...+.+||+.|||||++.+ ..|+.++||||+||++|||++|++||.+..... ........ ...
T Consensus 346 --~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~--~~~i~~~i------------~~~ 409 (689)
T 3v5w_A 346 --KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD--KHEIDRMT------------LTM 409 (689)
T ss_dssp --CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCC--HHHHHHHH------------HHC
T ss_pred --CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH--HHHHHHhh------------cCC
Confidence 2346799999999999975 579999999999999999999999997543222 11111110 000
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
....|...++++++|+.+||++||++|++.
T Consensus 410 ----~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~ 439 (689)
T 3v5w_A 410 ----AVELPDSFSPELRSLLEGLLQRDVNRRLGC 439 (689)
T ss_dssp ----CCCCCTTSCHHHHHHHHHHTCSCGGGCTTC
T ss_pred ----CCCCCccCCHHHHHHHHHHccCCHhHCCCC
Confidence 112334567789999999999999999984
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-30 Score=258.92 Aligned_cols=275 Identities=17% Similarity=0.173 Sum_probs=189.0
Q ss_pred CEEecCccCCCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcc
Q 037488 23 NSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNF 102 (628)
Q Consensus 23 ~~L~l~~n~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~ 102 (628)
..+.+.++ .++.++++.+.+...++..+..+++|++|+|++|+++++.|+.|.++++|+.|+|++|.++..+
T Consensus 3 ~~l~~~g~---~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----- 74 (317)
T 3o53_A 3 HEIKQNGN---RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL----- 74 (317)
T ss_dssp CEEEEETT---EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-----
T ss_pred ccccCCcC---ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-----
Confidence 34444443 3556778888887666667777888999999999998888888889999999999999887543
Q ss_pred cccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCC
Q 037488 103 LSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKL 182 (628)
Q Consensus 103 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 182 (628)
.+..+++|++|++++|.++++. ..++|+.|++++|.+.+..+. .+
T Consensus 75 --~~~~l~~L~~L~Ls~n~l~~l~------------------------------~~~~L~~L~l~~n~l~~~~~~---~~ 119 (317)
T 3o53_A 75 --DLESLSTLRTLDLNNNYVQELL------------------------------VGPSIETLHAANNNISRVSCS---RG 119 (317)
T ss_dssp --EETTCTTCCEEECCSSEEEEEE------------------------------ECTTCCEEECCSSCCSEEEEC---CC
T ss_pred --hhhhcCCCCEEECcCCcccccc------------------------------CCCCcCEEECCCCccCCcCcc---cc
Confidence 2677888888888888776321 124566666666666544332 24
Q ss_pred CCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCc-cCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEc
Q 037488 183 QKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASF-GNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNL 261 (628)
Q Consensus 183 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l 261 (628)
++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.++.+|... .+++|++|++
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~L 198 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDL 198 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc-ccccCCEEEC
Confidence 556666666666665555566666666666666666666555544 35667777777777776664333 3667777777
Q ss_pred CCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCc-ccCChhhcCCCCCCEEECcC-Cccc
Q 037488 262 SSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQ-GSIPDSIGDLINLKSLDLSN-NNLS 339 (628)
Q Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~-N~l~ 339 (628)
++|.+++.++ .+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++. +.+|..+..+++|+.|++++ +.++
T Consensus 199 s~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 199 SSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 7777765433 4677777777777777777 35666777788888888888887 66777788888888888773 4455
Q ss_pred ccCc
Q 037488 340 GIIP 343 (628)
Q Consensus 340 ~~~~ 343 (628)
+..+
T Consensus 277 ~~~~ 280 (317)
T 3o53_A 277 GQNE 280 (317)
T ss_dssp SSSS
T ss_pred CCch
Confidence 5443
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=236.20 Aligned_cols=232 Identities=23% Similarity=0.248 Sum_probs=180.9
Q ss_pred ccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCc-ccccCCccccCCCCCCEEEc
Q 037488 136 SMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQ-LEGSIPDDLCRLAALFQLDL 214 (628)
Q Consensus 136 ~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L 214 (628)
.++.|++++|.+.+..+..|..+++|+.|++++|.+++..|..+..+++|++|++++|+ +....|..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 34444445555554555667778888888888888887777788888888888888887 77666778888888899999
Q ss_pred cCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCC-ccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCC
Q 037488 215 GSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPST-LLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGV 293 (628)
Q Consensus 215 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 293 (628)
++|.+++..+..|..+++|++|++++|+++.+|.. +..+++|++|++++|.+++..+..|..+++|+.|++++|.+++.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 88888887788888888999999999988887754 66788899999999988877777788899999999999999888
Q ss_pred CccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCC
Q 037488 294 IPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPR 368 (628)
Q Consensus 294 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~ 368 (628)
.|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+.. .-...++.+..+.+.+.+..|+
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence 8888889999999999999998777777899999999999999887533211 0011223333556667666664
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-29 Score=252.84 Aligned_cols=236 Identities=22% Similarity=0.226 Sum_probs=142.3
Q ss_pred CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCC
Q 037488 32 LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKY 111 (628)
Q Consensus 32 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~ 111 (628)
+++|++|+|++|.+++..|..|.++++|+.|+|++|+++++.+ |..+++|++|++++|.++.++ ..++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----------~~~~ 100 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----------VGPS 100 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----------ECTT
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----------CCCC
Confidence 3478999999999998888899999999999999999998765 999999999999999988643 3489
Q ss_pred CcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCcccccccc-CCCCCCEeec
Q 037488 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALG-KLQKLQLLNL 190 (628)
Q Consensus 112 L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L 190 (628)
|++|++++|.++++.+..+ ..++.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+. .+++|++|++
T Consensus 101 L~~L~l~~n~l~~~~~~~~----~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 101 IETLHAANNNISRVSCSRG----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp CCEEECCSSCCSEEEECCC----SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred cCEEECCCCccCCcCcccc----CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 9999999999986544321 1345555555555544444455555555555555555444333332 3455555555
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCc-CC
Q 037488 191 EYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFT-GP 269 (628)
Q Consensus 191 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~-~~ 269 (628)
++|++++. + ....+++|++|++++|++++..+ .+..+++|+.|++++|+++.+|..+..+++|++|++++|.++ +.
T Consensus 177 ~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 177 QYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp TTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred CCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcC
Confidence 55554433 1 12224444555555554443222 244444444444444444444444444444444444444444 33
Q ss_pred CCCcccCCccccEEEcC
Q 037488 270 LPLEIGNLKVLIKIDLS 286 (628)
Q Consensus 270 ~~~~~~~l~~L~~L~Ls 286 (628)
++..+..++.|+.++++
T Consensus 254 ~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 254 LRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHhccccceEEECC
Confidence 33334444444444443
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-29 Score=247.54 Aligned_cols=183 Identities=22% Similarity=0.261 Sum_probs=140.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.++|...+.||+|+||.||+|.. .+|+.||||++........+.+.+|+.++++++|||||++++++..++..
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 98 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 98 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence 46899999999999999999986 67999999999866555567789999999999999999999987543311
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||+|+....... .....
T Consensus 99 ~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~ 176 (297)
T 3fxz_A 99 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTM 176 (297)
T ss_dssp CTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC--CBCCC
T ss_pred CCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc--ccCCc
Confidence 49999986543322 23456
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhc
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVI 599 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (628)
+||+.|+|||++.+..|+.++||||+||++|||++|+.||....... ......... ......
T Consensus 177 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~~~~~~-----------------~~~~~~ 238 (297)
T 3fxz_A 177 VGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR-ALYLIATNG-----------------TPELQN 238 (297)
T ss_dssp CSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHHC-----------------SCCCSC
T ss_pred cCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhCC-----------------CCCCCC
Confidence 79999999999999999999999999999999999999996532111 000000000 001122
Q ss_pred hhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 600 KGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 600 ~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..++.++.+++.+||+.||++|||+.|+
T Consensus 239 ~~~~~~~~~~li~~~l~~dp~~Rps~~el 267 (297)
T 3fxz_A 239 PEKLSAIFRDFLNRCLEMDVEKRGSAKEL 267 (297)
T ss_dssp GGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred ccccCHHHHHHHHHHccCChhHCcCHHHH
Confidence 33456779999999999999999998763
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-29 Score=251.87 Aligned_cols=248 Identities=20% Similarity=0.246 Sum_probs=193.1
Q ss_pred ccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCccc-ccCCcccc-------CCCCCCEEEccCCcCCccccc
Q 037488 106 LSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNIS-GGIPEEIS-------NLTNLIAIYLGGNKLNGSIPI 177 (628)
Q Consensus 106 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~p~ 177 (628)
+.+.++|+.|++++|.+ .+|..+.. .++.|++++|.+. ..+|..+. ++++|++|++++|++++..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34456677777777777 45555543 2677777777773 34555554 688899999999999888887
Q ss_pred cc--cCCCCCCEeecccCcccccCCccccCC-----CCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCc---CC
Q 037488 178 AL--GKLQKLQLLNLEYNQLEGSIPDDLCRL-----AALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITS---IP 247 (628)
Q Consensus 178 ~~--~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---lp 247 (628)
.+ ..+++|++|+|++|++.+. |..+..+ ++|++|++++|++.+..|..|+.+++|++|++++|++.+ +|
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 76 8889999999999998876 7777666 889999999999988888889999999999999998764 34
Q ss_pred CCc--cCCCCCcEEEcCCCCCcCC---CCCcccCCccccEEEcCCCcCCCCCc-cccCCCCCCCEEeCCCCcCcccCChh
Q 037488 248 STL--LNLKDILYLNLSSNFFTGP---LPLEIGNLKVLIKIDLSMNNFSGVIP-ITIGYLKDLQYLFLEYNRLQGSIPDS 321 (628)
Q Consensus 248 ~~~--~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~ 321 (628)
..+ ..+++|++|++++|.+++. ....+..+++|+.|++++|++++..| ..+..+++|++|++++|+++ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 444 6788999999999988732 22334577889999999999987765 45566889999999999998 66766
Q ss_pred hcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCccee
Q 037488 322 IGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEG 364 (628)
Q Consensus 322 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~ 364 (628)
+. ++|+.|++++|++++. |. +..+++|+.|++++|++++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 65 7899999999999877 54 8888999999999998864
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-28 Score=248.39 Aligned_cols=249 Identities=21% Similarity=0.178 Sum_probs=160.1
Q ss_pred CCCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccc-cCccccC-------CCCCCCEEEccCccccCCCCCCcc
Q 037488 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYG-FIPNTFG-------NLRNLNRLGLNDNYLTSSTPKLNF 102 (628)
Q Consensus 31 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~f~-------~l~~L~~L~L~~N~l~~~~~~~~~ 102 (628)
..++|++|++++|.+ .+|..+... |+.|+|++|++.. ..|..+. ++++|++|+|++|.++...+..-
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~- 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL- 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS-
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH-
Confidence 356789999999999 566655544 8899999999953 3455454 78999999999999986433210
Q ss_pred cccccCCCCCcEEEcccCCCCCCCchHHhccc----cccceeeccCCcccccCCccccCCCCCCEEEccCCcCCcc--cc
Q 037488 103 LSSLSNCKYLKYFSFSNNSLDGILPRAIGNLS----QSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGS--IP 176 (628)
Q Consensus 103 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~----~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p 176 (628)
.+..+++|++|++++|.+++. |..+..+. ..|+.|++++|.+.+..|..|+.+++|+.|++++|++.+. .+
T Consensus 116 --~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 116 --LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp --SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred --HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 127889999999999999987 77777663 3566666666666666666666666666666666665543 22
Q ss_pred ccc--cCCCCCCEeecccCcccc---cCCccccCCCCCCEEEccCCcCcccCC-CCccCCCCCcEEEccCCcCCcCCCCc
Q 037488 177 IAL--GKLQKLQLLNLEYNQLEG---SIPDDLCRLAALFQLDLGSNKLSGFVP-ASFGNLTNLRSLHLGSNQITSIPSTL 250 (628)
Q Consensus 177 ~~~--~~l~~L~~L~L~~n~l~~---~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~lp~~~ 250 (628)
..+ ..+++|++|++++|++.+ .....+..+++|++|++++|++++..| ..+..+++|++|+|++|+++.+|..+
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~ 272 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhc
Confidence 233 566666666666666652 111223455666666666666665443 34445566666666666666665554
Q ss_pred cCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCC
Q 037488 251 LNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFS 291 (628)
Q Consensus 251 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (628)
. ++|++|++++|++++. |. +..+++|++|++++|.++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 4 5555555555555544 33 555555555555555554
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-28 Score=248.57 Aligned_cols=179 Identities=21% Similarity=0.271 Sum_probs=138.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|...+.||+|+||.||+|.. .+|+.||||++.... ......+.+|+++++.++|||||++++++..+...
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 46899999999999999999997 679999999997532 22245788999999999999999999988664321
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+...... ..
T Consensus 88 ~E~~~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~---~~ 164 (336)
T 3h4j_B 88 IEYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGN---FL 164 (336)
T ss_dssp ECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSB---TT
T ss_pred EECCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccceeccCCc---cc
Confidence 4999998654332 22
Q ss_pred ccccccccccCccccccCcc-CcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 517 TQTLATIGYMAPEYGREGRV-STNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~-~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
...+||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+..... ....... .
T Consensus 165 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~-----------------~~~~i~~----~ 223 (336)
T 3h4j_B 165 KTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPN-----------------LFKKVNS----C 223 (336)
T ss_dssp CCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTT-----------------CBCCCCS----S
T ss_pred ccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHH-----------------HHHHHHc----C
Confidence 45689999999999998886 789999999999999999999997532211 1111110 1
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+...++++.+++.+||+.||++|||+.|+
T Consensus 224 ~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~ei 256 (336)
T 3h4j_B 224 VYVMPDFLSPGAQSLIRRMIVADPMQRITIQEI 256 (336)
T ss_dssp CCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred CCCCcccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 122334456779999999999999999998763
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-29 Score=251.53 Aligned_cols=180 Identities=23% Similarity=0.279 Sum_probs=138.9
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
..++|...+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|+++++.++||||+++++++..++..
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 92 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 92 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence 457899999999999999999987 68999999999754 334566788999999999999999999987654321
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+...... .
T Consensus 93 ~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~---~ 169 (328)
T 3fe3_A 93 MEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG---K 169 (328)
T ss_dssp ECCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSC---G
T ss_pred EECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCC---c
Confidence 4999998654332 2
Q ss_pred cccccccccccCccccccCccC-cccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 516 QTQTLATIGYMAPEYGREGRVS-TNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~-~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
....+||++|+|||++.+..++ .++||||+||++|||++|+.||.+.. ........ ..+.
T Consensus 170 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-----~~~~~~~i------------~~~~-- 230 (328)
T 3fe3_A 170 LDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQN-----LKELRERV------------LRGK-- 230 (328)
T ss_dssp GGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHHH------------HHCC--
T ss_pred cccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCC-----HHHHHHHH------------HhCC--
Confidence 3556899999999999988875 79999999999999999999997532 11111111 0011
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...|..++.++.+++.+||+.||++|||+.|+
T Consensus 231 --~~~p~~~s~~~~~li~~~L~~dP~~R~t~~ei 262 (328)
T 3fe3_A 231 --YRIPFYMSTDCENLLKRFLVLNPIKRGTLEQI 262 (328)
T ss_dssp --CCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHH
T ss_pred --CCCCCCCCHHHHHHHHHHCCCChhHCcCHHHH
Confidence 11223356679999999999999999998763
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-26 Score=247.44 Aligned_cols=263 Identities=24% Similarity=0.277 Sum_probs=220.1
Q ss_pred CCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccc
Q 037488 57 SKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQS 136 (628)
Q Consensus 57 ~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~ 136 (628)
.+++.|++++|.++.+ |..+. ++|+.|+|++|.|+.++. .+++|++|+|++|+++++.+ .+ ..
T Consensus 40 ~~l~~L~ls~n~L~~l-p~~l~--~~L~~L~L~~N~l~~lp~---------~l~~L~~L~Ls~N~l~~lp~----~l-~~ 102 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLTSLPV----LP-PG 102 (622)
T ss_dssp HCCCEEECCSSCCSCC-CSCCC--TTCSEEEECSCCCSCCCC---------CCTTCCEEEECSCCCSCCCC----CC-TT
T ss_pred CCCcEEEecCCCcCcc-ChhhC--CCCcEEEecCCCCCCCCC---------cCCCCCEEEcCCCcCCcCCC----CC-CC
Confidence 4689999999999965 55554 899999999999997653 46899999999999986544 23 47
Q ss_pred cceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccC
Q 037488 137 MEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGS 216 (628)
Q Consensus 137 l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 216 (628)
|+.|++++|.+++. |. .+++|+.|++++|++++ +|.. +++|++|++++|++.+ +|. .+.+|+.|++++
T Consensus 103 L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~ 170 (622)
T 3g06_A 103 LLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYN 170 (622)
T ss_dssp CCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCC
Confidence 99999999999874 33 57899999999999985 5543 4899999999999985 443 357899999999
Q ss_pred CcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCcc
Q 037488 217 NKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPI 296 (628)
Q Consensus 217 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 296 (628)
|.++++ | ..+++|+.|++++|.++.+|.. +++|+.|++++|.++.. |. .+++|+.|++++|.+++ +|
T Consensus 171 N~l~~l-~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~-lp- 237 (622)
T 3g06_A 171 NQLTSL-P---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTS-LP- 237 (622)
T ss_dssp SCCSCC-C---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSC-CC-
T ss_pred CCCCCC-c---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCc-CC-
Confidence 999864 4 4568999999999999999864 47899999999999854 43 34789999999999986 45
Q ss_pred ccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCC
Q 037488 297 TIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPR 368 (628)
Q Consensus 297 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~ 368 (628)
..+++|+.|++++|+++ .+|. .+++|+.|++++|.|+ .+|..+..+++|+.|++++|++++.+|.
T Consensus 238 --~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 238 --VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp --CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred --CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 45689999999999998 4555 6789999999999999 5577899999999999999999977653
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-28 Score=251.08 Aligned_cols=183 Identities=17% Similarity=0.201 Sum_probs=139.6
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchh------HHHHHHHHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYRE------AFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
.+.|...+.||+|+||.||+|+. .+|+.||||+++..... ..+.+.+|+.++++++|||||++++++.++...
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 46789999999999999999987 57999999999754321 246789999999999999999999987653311
Q ss_pred ----------------------------------------------------------------------cccccccccc
Q 037488 499 ----------------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 499 ----------------------------------------------------------------------~DFGla~~~~ 508 (628)
+|||+|+...
T Consensus 91 ~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~ 170 (361)
T 2yab_A 91 VLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE 170 (361)
T ss_dssp EEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECC
T ss_pred EEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcC
Confidence 3999998654
Q ss_pred ccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccc
Q 037488 509 KEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588 (628)
Q Consensus 509 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (628)
... .....+||+.|+|||++.+..|+.++||||+||++|||++|++||.+... ...... .
T Consensus 171 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~-----~~~~~~------------i 230 (361)
T 2yab_A 171 DGV---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK-----QETLAN------------I 230 (361)
T ss_dssp TTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH-----HHHHHH------------H
T ss_pred CCC---ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHH------------H
Confidence 332 22456799999999999999999999999999999999999999965321 111111 1
Q ss_pred ccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...........+..++.++++++.+||..||++|||+.|+
T Consensus 231 ~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~ 270 (361)
T 2yab_A 231 TAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEA 270 (361)
T ss_dssp HTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred HhcCCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHH
Confidence 1111112223344567789999999999999999998753
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-28 Score=247.30 Aligned_cols=209 Identities=33% Similarity=0.529 Sum_probs=156.3
Q ss_pred cccchhhHHHHHhhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccch-hHHHHHHHHHHHhhcccCCCcceeeee
Q 037488 413 GIRRLTYLELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYR-EAFKNFDIECDMMKHIRHRNLIKIISS 491 (628)
Q Consensus 413 ~~~~~~~~~l~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~ 491 (628)
....++..++....++|...+.||+|+||.||+|+..+|+.||||++..... .....+.+|++++++++||||++++++
T Consensus 16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~ 95 (326)
T 3uim_A 16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 95 (326)
T ss_dssp CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEE
T ss_pred ccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEE
Confidence 3456788899999999999999999999999999988899999999975432 223368899999999999999999998
Q ss_pred ccCCCcc-------------------------------------------------------------------------
Q 037488 492 CSNDDFK------------------------------------------------------------------------- 498 (628)
Q Consensus 492 ~~~~~~~------------------------------------------------------------------------- 498 (628)
|..++..
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl 175 (326)
T 3uim_A 96 CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVV 175 (326)
T ss_dssp ECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEE
T ss_pred EecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEe
Confidence 7543211
Q ss_pred ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcc---cCCCccHHHHHHh
Q 037488 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEI---FSGEMTLKHWVND 575 (628)
Q Consensus 499 ~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~---~~~~~~~~~~~~~ 575 (628)
+|||+|+...... ........||++|+|||++.+..++.++||||+||++|||+||+.||+.. .........|+..
T Consensus 176 ~Dfg~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 254 (326)
T 3uim_A 176 GDFGLAKLMDYKD-THVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKG 254 (326)
T ss_dssp CCCSSCEECCSSS-SCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTT
T ss_pred ccCccccccCccc-ccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHH
Confidence 3999998654332 22234456999999999999999999999999999999999999999632 1233445555544
Q ss_pred hcCC-ccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 576 LLPI-SVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 576 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.... ......+.... ...+..++.++.+++.+||+.||++|||+.||
T Consensus 255 ~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el 302 (326)
T 3uim_A 255 LLKEKKLEALVDVDLQ------GNYKDEEVEQLIQVALLCTQSSPMERPKMSEV 302 (326)
T ss_dssp TTSSCCSTTSSCTTCT------TSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHH
T ss_pred HhhchhhhhhcChhhc------cccCHHHHHHHHHHHHHHhCcCCccCCCHHHH
Confidence 3332 12222222221 22344567889999999999999999998764
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-28 Score=251.26 Aligned_cols=182 Identities=18% Similarity=0.288 Sum_probs=138.9
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
.++|...+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|++++++++|||||++++++.+++..
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~ 107 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 107 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 46799999999999999999987 57999999999754 234456789999999999999999999987654321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+......
T Consensus 108 e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~-- 185 (362)
T 2bdw_A 108 DLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSE-- 185 (362)
T ss_dssp CCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCC--
T ss_pred ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCc--
Confidence 3999998654322
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
.....+||++|+|||++.+..|+.++||||+||++|||++|++||.+... ........ ....
T Consensus 186 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~--~~~~~~i~---------------~~~~ 247 (362)
T 2bdw_A 186 -AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ--HRLYAQIK---------------AGAY 247 (362)
T ss_dssp -SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHH---------------HTCC
T ss_pred -ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHH---------------hCCC
Confidence 22456799999999999999999999999999999999999999965321 11111111 1111
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
......+..++.++.+++.+||+.||++|||+.|
T Consensus 248 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e 281 (362)
T 2bdw_A 248 DYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQ 281 (362)
T ss_dssp CCCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred CCCcccccCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence 1112223456778999999999999999999865
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-28 Score=246.03 Aligned_cols=194 Identities=23% Similarity=0.264 Sum_probs=142.5
Q ss_pred cchhhHHHHHhhcC----------CCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCC
Q 037488 415 RRLTYLELFQATNG----------FSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHR 483 (628)
Q Consensus 415 ~~~~~~~l~~~~~~----------~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 483 (628)
..+++.++..+++. |...+.||+|+||.||+|+. .+|+.||||+++.......+.+.+|+.++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 34555665555543 66677899999999999997 47999999999866555567789999999999999
Q ss_pred CcceeeeeccCCCcc-----------------------------------------------------------------
Q 037488 484 NLIKIISSCSNDDFK----------------------------------------------------------------- 498 (628)
Q Consensus 484 niv~l~~~~~~~~~~----------------------------------------------------------------- 498 (628)
||++++++|..++..
T Consensus 103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl 182 (321)
T 2c30_A 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKL 182 (321)
T ss_dssp TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEE
T ss_pred CcceEEEEEEECCEEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCcEEE
Confidence 999999987543211
Q ss_pred ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcC
Q 037488 499 ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLP 578 (628)
Q Consensus 499 ~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~ 578 (628)
+|||+++....... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||...... ..........
T Consensus 183 ~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~--~~~~~~~~~~- 257 (321)
T 2c30_A 183 SDFGFCAQISKDVP--KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPV--QAMKRLRDSP- 257 (321)
T ss_dssp CCCTTCEECCSSSC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHSS-
T ss_pred eeeeeeeecccCcc--ccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHhcCC-
Confidence 49999986543321 224567999999999999999999999999999999999999999653211 1111111000
Q ss_pred CccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 579 ISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .....+..++.++.+++.+||+.||++|||+.|+
T Consensus 258 -------~--------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el 292 (321)
T 2c30_A 258 -------P--------PKLKNSHKVSPVLRDFLERMLVRDPQERATAQEL 292 (321)
T ss_dssp -------C--------CCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred -------C--------CCcCccccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 0 0011122346679999999999999999998763
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-28 Score=255.60 Aligned_cols=185 Identities=19% Similarity=0.216 Sum_probs=138.5
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
..++|...+.||+|+||.||+|.. .+|+.||+|++.... ....+.+.+|+++++.++|||||++++++.+++..
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv 88 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI 88 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence 356789999999999999999986 679999999997543 34456789999999999999999999987654321
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+|+......
T Consensus 89 ~E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~- 167 (444)
T 3soa_A 89 FDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQ- 167 (444)
T ss_dssp ECCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTC-
T ss_pred EEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCC-
Confidence 4999998664332
Q ss_pred ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 513 SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
......+||++|+|||++.+..|+.++||||+||++|||++|++||.+... ....... ..+.
T Consensus 168 -~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~--~~~~~~i---------------~~~~ 229 (444)
T 3soa_A 168 -QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQ--HRLYQQI---------------KAGA 229 (444)
T ss_dssp -CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHH---------------HHTC
T ss_pred -ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccH--HHHHHHH---------------HhCC
Confidence 222456899999999999999999999999999999999999999965321 1111111 1111
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+..+++++++++.+||+.||++|||+.|+
T Consensus 230 ~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~ 265 (444)
T 3soa_A 230 YDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEA 265 (444)
T ss_dssp CCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred CCCCccccccCCHHHHHHHHHHcCCChhHCCCHHHH
Confidence 111122233557789999999999999999998753
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-28 Score=244.89 Aligned_cols=185 Identities=22% Similarity=0.295 Sum_probs=138.0
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch-hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR-EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.++|...+.||+|+||.||+|+. .+++.||||++..... ...+.+.+|+.+++.++|||||++++++..++..
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 46899999999999999999987 5799999999975432 3346688999999999999999999987654321
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|+............
T Consensus 86 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~ 165 (323)
T 3tki_A 86 YCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 165 (323)
T ss_dssp CCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBC
T ss_pred cCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccC
Confidence 3999998664433333334
Q ss_pred cccccccccCccccccCcc-CcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 518 QTLATIGYMAPEYGREGRV-STNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~-~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
..+||+.|+|||++.+..+ +.++||||+||++|||++|+.||............+.... ..
T Consensus 166 ~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~------------------~~ 227 (323)
T 3tki_A 166 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKK------------------TY 227 (323)
T ss_dssp SCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTC------------------TT
T ss_pred CCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhccc------------------cc
Confidence 5689999999999988776 7899999999999999999999976433322222222110 00
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..++.++.+++.+||+.||++|||+.|+
T Consensus 228 ~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ei 259 (323)
T 3tki_A 228 LNPWKKIDSAPLALLHKILVENPSARITIPDI 259 (323)
T ss_dssp STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred CCccccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 11123456678999999999999999998753
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-28 Score=250.34 Aligned_cols=183 Identities=16% Similarity=0.173 Sum_probs=139.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.+.|...+.||+|+||.||+|.. .+|+.||+|++..........+.+|++++++++|||||++++++.++...
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~ 129 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence 46789999999999999999987 57999999999866555566789999999999999999999987543211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+...... .
T Consensus 130 ~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~---~ 206 (387)
T 1kob_A 130 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE---I 206 (387)
T ss_dssp CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS---C
T ss_pred CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCCc---c
Confidence 4999998764332 1
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+... ......+.. .....
T Consensus 207 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~--~~~~~~i~~---------------~~~~~ 269 (387)
T 1kob_A 207 VKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD--LETLQNVKR---------------CDWEF 269 (387)
T ss_dssp EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHHHHHH---------------CCCCC
T ss_pred eeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH--HHHHHHHHh---------------CCCCC
Confidence 2345799999999999999999999999999999999999999975321 111111100 00011
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++.+++.+||+.||++|||+.|+
T Consensus 270 ~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~el 302 (387)
T 1kob_A 270 DEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDA 302 (387)
T ss_dssp CSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred CccccccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 111223456779999999999999999998753
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-27 Score=255.58 Aligned_cols=235 Identities=22% Similarity=0.247 Sum_probs=148.9
Q ss_pred CCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCC
Q 037488 33 QNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYL 112 (628)
Q Consensus 33 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L 112 (628)
++|++|+|++|.+++..|..|.++++|++|+|++|.++++.| |+.+++|+.|+|++|.|+.++ ..++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----------~~~~L 101 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----------VGPSI 101 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----------ECTTC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----------CCCCc
Confidence 356666666666666666666666777777777776666544 666666777777766665432 12566
Q ss_pred cEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeeccc
Q 037488 113 KYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEY 192 (628)
Q Consensus 113 ~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 192 (628)
++|++++|.++++.+. .+++|+.|+|++|.+++..|..++.+++|++|+|++
T Consensus 102 ~~L~L~~N~l~~~~~~----------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (487)
T 3oja_A 102 ETLHAANNNISRVSCS----------------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (487)
T ss_dssp CEEECCSSCCCCEEEC----------------------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT
T ss_pred CEEECcCCcCCCCCcc----------------------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC
Confidence 6666666666543322 234566666666666666666666666666666666
Q ss_pred CcccccCCcccc-CCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCC
Q 037488 193 NQLEGSIPDDLC-RLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLP 271 (628)
Q Consensus 193 n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 271 (628)
|.+.+..|..+. .+++|+.|+|++|.+++..+ +..+++|+.|+|++|.++++|+.+..+++|+.|++++|.+++ +|
T Consensus 154 N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp 230 (487)
T 3oja_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IE 230 (487)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-EC
T ss_pred CCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cc
Confidence 666665555554 56666666666666665422 234666777777777777666666666677777777777664 45
Q ss_pred CcccCCccccEEEcCCCcCC-CCCccccCCCCCCCEEeCC
Q 037488 272 LEIGNLKVLIKIDLSMNNFS-GVIPITIGYLKDLQYLFLE 310 (628)
Q Consensus 272 ~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~ 310 (628)
..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 231 ~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 55666677777777777766 4455566666666666664
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-28 Score=241.47 Aligned_cols=200 Identities=21% Similarity=0.235 Sum_probs=138.6
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.++|...+.||+|+||+||+|+..+|+.||||++.... ....+.+.+|++++++++|||||++++++..++..
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 99 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE 99 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence 46788999999999999999999889999999996532 22346788999999999999999999988654321
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|+...... ....
T Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~--~~~~ 177 (311)
T 3niz_A 100 FMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPV--RSYT 177 (311)
T ss_dssp CCSEEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCC--C---
T ss_pred CCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcCceecCCCc--cccc
Confidence 4999998653322 1224
Q ss_pred cccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC---ccceeecc-----c
Q 037488 518 QTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI---SVMKVVDA-----H 588 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~ 588 (628)
..+||++|+|||++.+ ..|+.++||||+||++|||++|+.||......+ ............ .+....+. .
T Consensus 178 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 256 (311)
T 3niz_A 178 HEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDD-QLPKIFSILGTPNPREWPQVQELPLWKQR 256 (311)
T ss_dssp CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTT-HHHHHHHHHCCCCTTTSGGGTTSHHHHSC
T ss_pred CCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHHCCCChHHhhhhhccchhhhc
Confidence 4579999999999876 568999999999999999999999997644332 222222211111 11000000 0
Q ss_pred ccCC--cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLSQ--EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~~--~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.... ..........++.++.+++.+||+.||++|||+.|+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el 298 (311)
T 3niz_A 257 TFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDA 298 (311)
T ss_dssp CCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred ccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHH
Confidence 0000 000111223456789999999999999999998763
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-28 Score=245.24 Aligned_cols=182 Identities=17% Similarity=0.176 Sum_probs=138.1
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.++|...+.||+|+||.||+|.. .+|+.||+|.+.... .....+.+|+++++.++||||+++++++.+.+..
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 46889999999999999999987 578999999997543 3345688999999999999999999987543211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++...... .
T Consensus 83 ~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~---~ 159 (321)
T 1tki_A 83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD---N 159 (321)
T ss_dssp CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC---E
T ss_pred CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCC---c
Confidence 3999998764332 1
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
.....||+.|+|||++.+..++.++||||+||++|||++|+.||..... ...... ........
T Consensus 160 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~~~~------------i~~~~~~~ 222 (321)
T 1tki_A 160 FRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN-----QQIIEN------------IMNAEYTF 222 (321)
T ss_dssp EEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHH------------HHHTCCCC
T ss_pred cccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH-----HHHHHH------------HHcCCCCC
Confidence 2345799999999999998899999999999999999999999965321 111111 01111111
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++.+++.+||+.||++|||+.|+
T Consensus 223 ~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~ 255 (321)
T 1tki_A 223 DEEAFKEISIEAMDFVDRLLVKERKSRMTASEA 255 (321)
T ss_dssp CHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred ChhhhccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 122334567789999999999999999998763
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-28 Score=244.62 Aligned_cols=185 Identities=22% Similarity=0.326 Sum_probs=138.2
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.++|...+.||+|+||.||+|.. .+++.||+|++........+.+.+|++++++++||||+++++++.+++..
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 88 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY 88 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence 46788899999999999999987 57999999998766666778899999999999999999999987643211
Q ss_pred -------------------------------------------------------------ccccccccccccCccc---
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSL--- 514 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~--- 514 (628)
+|||+|+.........
T Consensus 89 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~ 168 (310)
T 3s95_A 89 IKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGL 168 (310)
T ss_dssp CTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC---------
T ss_pred cCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceeccccccccccc
Confidence 4999998654322110
Q ss_pred ---------ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceee
Q 037488 515 ---------IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVV 585 (628)
Q Consensus 515 ---------~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (628)
.....+||+.|+|||++.+..++.++|||||||++|||++|..|+....+....... ..
T Consensus 169 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~------------~~ 236 (310)
T 3s95_A 169 RSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGL------------NV 236 (310)
T ss_dssp -----------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSB------------CH
T ss_pred ccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhh------------hh
Confidence 111457999999999999999999999999999999999999998754332211000 00
Q ss_pred cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
... .....+..++.++.+++.+||+.||++|||+.|+
T Consensus 237 ~~~------~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l 273 (310)
T 3s95_A 237 RGF------LDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKL 273 (310)
T ss_dssp HHH------HHHTCCTTCCTTHHHHHHHHTCSSGGGSCCHHHH
T ss_pred hcc------ccccCCCCCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 000 0011223455669999999999999999998763
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-28 Score=248.83 Aligned_cols=183 Identities=18% Similarity=0.247 Sum_probs=137.9
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch-----hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR-----EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
.+.|...+.||+|+||.||+|.. .+|+.||||+++.... ...+.+.+|+++++.++|||||++++++..++..
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 45789999999999999999987 6799999999975321 1356789999999999999999999876543211
Q ss_pred ------------------------------------------------------------------------cccccccc
Q 037488 499 ------------------------------------------------------------------------ADFGMAKP 506 (628)
Q Consensus 499 ------------------------------------------------------------------------~DFGla~~ 506 (628)
+|||+|+.
T Consensus 103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~ 182 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQ 182 (351)
T ss_dssp EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEE
T ss_pred EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcceeE
Confidence 39999986
Q ss_pred ccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeec
Q 037488 507 LLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVD 586 (628)
Q Consensus 507 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (628)
..... ......+||++|+|||++.+..|+.++||||+||++|||++|+.||.... ........
T Consensus 183 ~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~--~~~~~~i~------------- 245 (351)
T 3c0i_A 183 LGESG--LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK--ERLFEGII------------- 245 (351)
T ss_dssp CCTTS--CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH--HHHHHHHH-------------
T ss_pred ecCCC--eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH--HHHHHHHH-------------
Confidence 64332 12345679999999999999999999999999999999999999996521 11111111
Q ss_pred ccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 587 AHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..........+..++.++.+++.+||+.||++|||+.|+
T Consensus 246 ---~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~ 284 (351)
T 3c0i_A 246 ---KGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEA 284 (351)
T ss_dssp ---HTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred ---cCCCCCCccccccCCHHHHHHHHHHCCCChhHCcCHHHH
Confidence 111111122233456789999999999999999998653
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-28 Score=248.21 Aligned_cols=179 Identities=20% Similarity=0.209 Sum_probs=131.1
Q ss_pred CcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----------
Q 037488 430 SENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---------- 498 (628)
Q Consensus 430 ~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---------- 498 (628)
...+.||+|+||.||+|.. .+|+.||||+++.......+.+.+|++++++++|||||+++++|..++..
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~ 171 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG 171 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence 3356899999999999987 67999999999876655667899999999999999999999987654321
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||+|+...... .....
T Consensus 172 ~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~---~~~~~ 248 (373)
T 2x4f_A 172 ELFDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE---KLKVN 248 (373)
T ss_dssp EEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC---BCCCC
T ss_pred cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc---ccccc
Confidence 4999998764332 12345
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhc
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVI 599 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (628)
+||++|+|||++.+..++.++|||||||++|||++|+.||...... ..+..+... ........
T Consensus 249 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~-~~~~~i~~~----------------~~~~~~~~ 311 (373)
T 2x4f_A 249 FGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDA-ETLNNILAC----------------RWDLEDEE 311 (373)
T ss_dssp CSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHHT----------------CCCSCSGG
T ss_pred cCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHhc----------------cCCCChhh
Confidence 7999999999999999999999999999999999999999653211 111111111 00111112
Q ss_pred hhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 600 KGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 600 ~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..++.++.+++.+||+.||++|||+.|+
T Consensus 312 ~~~~~~~~~~li~~~L~~dp~~Rps~~e~ 340 (373)
T 2x4f_A 312 FQDISEEAKEFISKLLIKEKSWRISASEA 340 (373)
T ss_dssp GTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred hccCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 23456779999999999999999998763
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-28 Score=244.78 Aligned_cols=183 Identities=17% Similarity=0.227 Sum_probs=137.4
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch------hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR------EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
.+.|...+.||+|+||.||+|+. .+|+.||||+++.... ...+.+.+|++++++++|||||++++++..+...
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 89 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV 89 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 35688899999999999999987 5799999999975432 1356789999999999999999999987653311
Q ss_pred ----------------------------------------------------------------------cccccccccc
Q 037488 499 ----------------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 499 ----------------------------------------------------------------------~DFGla~~~~ 508 (628)
+|||+|+...
T Consensus 90 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~ 169 (326)
T 2y0a_A 90 ILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID 169 (326)
T ss_dssp EEEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECC
T ss_pred EEEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECC
Confidence 3999998654
Q ss_pred ccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccc
Q 037488 509 KEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588 (628)
Q Consensus 509 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (628)
... .....+||+.|+|||++.+..|+.++||||+||++|||++|+.||....... .......
T Consensus 170 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~~~~-------------- 231 (326)
T 2y0a_A 170 FGN---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE-TLANVSA-------------- 231 (326)
T ss_dssp TTS---CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHHHHHH--------------
T ss_pred CCC---ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH-HHHHHHh--------------
Confidence 322 1244679999999999999999999999999999999999999996532110 1111100
Q ss_pred ccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.........+..++.++.+++.+||+.||++|||+.|+
T Consensus 232 --~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~ 269 (326)
T 2y0a_A 232 --VNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDS 269 (326)
T ss_dssp --TCCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred --cCCCcCccccccCCHHHHHHHHHHccCChhhCCCHHHH
Confidence 01111122233456779999999999999999998763
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-28 Score=247.15 Aligned_cols=185 Identities=19% Similarity=0.341 Sum_probs=132.0
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccC--CCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRH--RNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~--- 498 (628)
.+.|...+.||+|+||.||+|...+++.||||++... .....+.+.+|++++++++| |||+++++++..+...
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 4568899999999999999999888999999999754 33445778999999999976 9999999987654321
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|+............
T Consensus 88 ~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~~~~~kl~DFG~a~~~~~~~~~~~~~ 167 (343)
T 3dbq_A 88 MECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKD 167 (343)
T ss_dssp ECCCSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTEEEECCCSSSCCC----------
T ss_pred EeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEECCcEEEeecccccccCcccccccCC
Confidence 4999998765443322334
Q ss_pred cccccccccCcccccc-----------CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeec
Q 037488 518 QTLATIGYMAPEYGRE-----------GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVD 586 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~-----------~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (628)
..+||++|+|||++.+ ..|+.++|||||||++|||++|+.||.............. +
T Consensus 168 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~------------~ 235 (343)
T 3dbq_A 168 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAII------------D 235 (343)
T ss_dssp --CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHH------------C
T ss_pred CCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHh------------c
Confidence 5679999999999865 6789999999999999999999999975322111111110 1
Q ss_pred ccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 587 AHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.. ....+..++.++.+++.+||+.||++|||+.|+
T Consensus 236 ~~~------~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~ 271 (343)
T 3dbq_A 236 PNH------EIEFPDIPEKDLQDVLKCCLKRDPKQRISIPEL 271 (343)
T ss_dssp TTS------CCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred CCc------ccCCcccCCHHHHHHHHHHcCCChhHCCCHHHH
Confidence 100 111222334568999999999999999998763
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-28 Score=244.54 Aligned_cols=193 Identities=20% Similarity=0.243 Sum_probs=136.8
Q ss_pred hhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-------
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF------- 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------- 497 (628)
..++|...+.||+|+||.||+|+.. ++.||||++..... ....+.+|+.++++++|||||++++++..+..
T Consensus 22 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~l 99 (322)
T 3soc_A 22 QSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWL 99 (322)
T ss_dssp TTEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred chhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEE
Confidence 4567889999999999999999876 88999999975433 33456679999999999999999988654221
Q ss_pred ------------------------------------------------------------------------cccccccc
Q 037488 498 ------------------------------------------------------------------------KADFGMAK 505 (628)
Q Consensus 498 ------------------------------------------------------------------------~~DFGla~ 505 (628)
.+|||+|+
T Consensus 100 v~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~ 179 (322)
T 3soc_A 100 ITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLAL 179 (322)
T ss_dssp EEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred EEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCccc
Confidence 03999998
Q ss_pred cccccCcccccccccccccccCcccccc-----CccCcccchhhHhHHHHHHhhCCCCCCcccCCCcc-H----------
Q 037488 506 PLLKEDQSLIQTQTLATIGYMAPEYGRE-----GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMT-L---------- 569 (628)
Q Consensus 506 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~-~---------- 569 (628)
..............+||+.|+|||++.+ ..++.++|||||||++|||+||+.||......... .
T Consensus 180 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~ 259 (322)
T 3soc_A 180 KFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSL 259 (322)
T ss_dssp EECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCH
T ss_pred ccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCch
Confidence 7644433323344679999999999987 45788999999999999999999999764332211 1
Q ss_pred HHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 570 KHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+........ ..... ........++.++.+++.+||+.||++|||+.||
T Consensus 260 ~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el 309 (322)
T 3soc_A 260 EDMQEVVVHKK--------KRPVL-RDYWQKHAGMAMLCETIEECWDHDAEARLSAGCV 309 (322)
T ss_dssp HHHHHHHTTSC--------CCCCC-CGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred hhhhhhhhccc--------CCCCc-cccccccchHHHHHHHHHHHccCChhhCcCHHHH
Confidence 11111111000 00000 0011123456779999999999999999998764
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-28 Score=250.23 Aligned_cols=184 Identities=19% Similarity=0.339 Sum_probs=132.4
Q ss_pred cCCCcccccccCCccEEEEEEecCCcEEEEEEeecc--chhHHHHHHHHHHHhhccc--CCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIR--HRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~---- 498 (628)
..|...+.||+|+||.||+|....++.||||++... .....+.+.+|++++++++ |||||++++++..++..
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 458899999999999999999877999999999754 3345677899999999996 59999999987654321
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+|+.............
T Consensus 136 E~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~kl~DFG~a~~~~~~~~~~~~~~ 215 (390)
T 2zmd_A 136 ECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDS 215 (390)
T ss_dssp ECCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEESSSCEEECCCSSSCCC---------CC
T ss_pred ecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEECCeEEEEecCccccccCCCccccCCC
Confidence 49999987644332223345
Q ss_pred ccccccccCcccccc-----------CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecc
Q 037488 519 TLATIGYMAPEYGRE-----------GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~-----------~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (628)
.+||++|||||++.+ ..|+.++|||||||++|||++|+.||.........+... +++
T Consensus 216 ~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~------------~~~ 283 (390)
T 2zmd_A 216 QVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAI------------IDP 283 (390)
T ss_dssp SCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHH------------HCT
T ss_pred CCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHH------------hCc
Confidence 689999999999865 468999999999999999999999997532211111111 111
Q ss_pred cccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. ....+...+.++.+++.+||+.||++|||+.|+
T Consensus 284 ~~------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~el 318 (390)
T 2zmd_A 284 NH------EIEFPDIPEKDLQDVLKCCLKRDPKQRISIPEL 318 (390)
T ss_dssp TS------CCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred cc------cCCCCccchHHHHHHHHHHcccChhhCCCHHHH
Confidence 00 011122235568999999999999999998763
|
| >3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-27 Score=252.20 Aligned_cols=200 Identities=20% Similarity=0.170 Sum_probs=134.7
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF---- 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 497 (628)
..++|...+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|+++++.++|||||++++++.....
T Consensus 60 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 139 (464)
T 3ttj_A 60 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF 139 (464)
T ss_dssp EETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred ecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence 357899999999999999999986 67999999999753 34456778999999999999999999998754321
Q ss_pred ---c--------------------------------------------------------------ccccccccccccCc
Q 037488 498 ---K--------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 498 ---~--------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
. +|||+|+.....
T Consensus 140 ~~~~lv~E~~~~~l~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~-- 217 (464)
T 3ttj_A 140 QDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS-- 217 (464)
T ss_dssp CEEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCCC-----C--
T ss_pred CeEEEEEeCCCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEEeeeecCCC--
Confidence 0 499999865432
Q ss_pred ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC--cc-c-------
Q 037488 513 SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI--SV-M------- 582 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~--~~-~------- 582 (628)
......+||++|+|||++.+..|+.++||||+||++|||++|++||.+....+ .+...+...... .. .
T Consensus 218 -~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~-~~~~i~~~lg~p~~~~~~~~~~~~~ 295 (464)
T 3ttj_A 218 -FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYID-QWNKVIEQLGTPCPEFMKKLQPTVR 295 (464)
T ss_dssp -CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCSCCHHHHTTSCHHHH
T ss_pred -cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcCCCCHHHHHHcchhhh
Confidence 12345689999999999999999999999999999999999999997532111 111111110000 00 0
Q ss_pred eeec----------ccccCC--cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 583 KVVD----------AHLLSQ--EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 583 ~~~~----------~~~~~~--~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+. +..... ...........+.++++|+.+||+.||++|||+.|+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~ 353 (464)
T 3ttj_A 296 NYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDA 353 (464)
T ss_dssp HHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred hHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 0000 000000 000001112236789999999999999999998763
|
| >3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-27 Score=236.43 Aligned_cols=200 Identities=18% Similarity=0.164 Sum_probs=138.6
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
++|+..+.||+|+||+||+|+. .+|+.||||++.... ....+.+.+|++++++++||||+++++++.+++..
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 5788999999999999999987 579999999997542 33456788999999999999999999987654321
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|+...... ....
T Consensus 82 ~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~ 159 (292)
T 3o0g_A 82 FCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV--RCYS 159 (292)
T ss_dssp CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCC--SCCC
T ss_pred cCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecCCcc--cccc
Confidence 4999998653322 2234
Q ss_pred cccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC---ccceeec---cc--
Q 037488 518 QTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI---SVMKVVD---AH-- 588 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~-- 588 (628)
..+||+.|+|||++.+.. |+.++||||+||++|||++|..|+.................... .+..... ..
T Consensus 160 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 239 (292)
T 3o0g_A 160 AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPY 239 (292)
T ss_dssp SCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCC
T ss_pred CCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhccccccccc
Confidence 567999999999998766 89999999999999999999888643222222222222211111 0000000 00
Q ss_pred -ccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 -LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 -~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...............+.++.+++.+||+.||++|||++|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~ 280 (292)
T 3o0g_A 240 PMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEA 280 (292)
T ss_dssp CCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred ccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHH
Confidence 0000000111223456789999999999999999998763
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-27 Score=235.06 Aligned_cols=206 Identities=28% Similarity=0.459 Sum_probs=150.3
Q ss_pred cccchhhHHHHHhhcCCCcc------cccccCCccEEEEEEecCCcEEEEEEeecc----chhHHHHHHHHHHHhhcccC
Q 037488 413 GIRRLTYLELFQATNGFSEN------NLIDRGGIGYVYKRRIHYGMEVAVKVFDLQ----YREAFKNFDIECDMMKHIRH 482 (628)
Q Consensus 413 ~~~~~~~~~l~~~~~~~~~~------~~ig~G~~g~V~~~~~~~~~~vavK~~~~~----~~~~~~~~~~E~~~l~~l~h 482 (628)
....|++.++..++++|... +.||+|+||.||+|.. +++.||||++... .....+.+.+|++++++++|
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 89 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH 89 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence 34567888899999999877 8899999999999987 4889999998642 23446778999999999999
Q ss_pred CCcceeeeeccCCCcc----------------------------------------------------------------
Q 037488 483 RNLIKIISSCSNDDFK---------------------------------------------------------------- 498 (628)
Q Consensus 483 ~niv~l~~~~~~~~~~---------------------------------------------------------------- 498 (628)
|||+++++++..++..
T Consensus 90 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~ 169 (307)
T 2nru_A 90 ENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEA 169 (307)
T ss_dssp TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTT
T ss_pred CCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCC
Confidence 9999999987653311
Q ss_pred -----ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHH
Q 037488 499 -----ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWV 573 (628)
Q Consensus 499 -----~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~ 573 (628)
+|||+++...............||+.|+|||++.+ .++.++||||+||++|||++|++||....... ....+.
T Consensus 170 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~-~~~~~~ 247 (307)
T 2nru_A 170 FTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQ-LLLDIK 247 (307)
T ss_dssp CCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSS-BTTHHH
T ss_pred CcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchH-HHHHHH
Confidence 39999986544332223344579999999998865 58999999999999999999999997643322 122222
Q ss_pred HhhcC--CccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 574 NDLLP--ISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 574 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..... ......+++.+ ...+..++.++.+++.+||+.||++|||+.||
T Consensus 248 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l 297 (307)
T 2nru_A 248 EEIEDEEKTIEDYIDKKM-------NDADSTSVEAMYSVASQCLHEKKNKRPDIKKV 297 (307)
T ss_dssp HHHHTTSCCHHHHSCSSC-------SCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred HHhhhhhhhhhhhccccc-------cccchHHHHHHHHHHHHHcCCCcccCcCHHHH
Confidence 11111 11111111111 11234567789999999999999999998763
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-27 Score=239.83 Aligned_cols=182 Identities=25% Similarity=0.318 Sum_probs=128.8
Q ss_pred hhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
..++|...+.||+|+||.||+|+. .|+.||||++.... ....+.+.+|++++++++|||||++++++..++..
T Consensus 35 ~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 113 (309)
T 3p86_A 35 PWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVT 113 (309)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEE
T ss_pred ChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEE
Confidence 356788899999999999999987 48899999986543 34457789999999999999999999987653311
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||+|+......
T Consensus 114 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~ 193 (309)
T 3p86_A 114 EYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTF 193 (309)
T ss_dssp ECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC---------
T ss_pred ecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCCCccccccc
Confidence 3999887543221
Q ss_pred cccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 512 QSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
.......||+.|+|||++.+..++.++||||+||++|||++|+.||....... .......
T Consensus 194 --~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~--~~~~~~~---------------- 253 (309)
T 3p86_A 194 --LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQ--VVAAVGF---------------- 253 (309)
T ss_dssp ----------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHH--HHHHHHH----------------
T ss_pred --cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHh----------------
Confidence 12244679999999999999999999999999999999999999997532211 1111100
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+..++.++.+++.+||+.||++|||+.|+
T Consensus 254 -~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l 289 (309)
T 3p86_A 254 -KCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATI 289 (309)
T ss_dssp -SCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred -cCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 000112334556779999999999999999998763
|
| >1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-27 Score=241.94 Aligned_cols=175 Identities=18% Similarity=0.249 Sum_probs=134.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|...+.||+|+||.||+|+. .+|+.||+|+++... ......+.+|+++++.++||||+++++++...+..
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 46788999999999999999987 579999999997542 23456788999999999999999999887654321
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+...... ..
T Consensus 84 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~--~~ 161 (337)
T 1o6l_A 84 MEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG--AT 161 (337)
T ss_dssp EECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT--CC
T ss_pred EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCC--Cc
Confidence 4999998643322 12
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
..+.+||+.|+|||++.+..|+.++||||+||++|||++|+.||..... ....... ....
T Consensus 162 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~~i------------~~~~--- 221 (337)
T 1o6l_A 162 MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----ERLFELI------------LMEE--- 221 (337)
T ss_dssp BCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHH------------HHCC---
T ss_pred ccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH-----HHHHHHH------------HcCC---
Confidence 3456899999999999999999999999999999999999999965211 1111110 0000
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERV 623 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rp 623 (628)
...+..++.++.+++.+||+.||++||
T Consensus 222 -~~~p~~~s~~~~~li~~lL~~dP~~R~ 248 (337)
T 1o6l_A 222 -IRFPRTLSPEAKSLLAGLLKKDPKQRL 248 (337)
T ss_dssp -CCCCTTSCHHHHHHHHHHTCSSTTTST
T ss_pred -CCCCCCCCHHHHHHHHHHhhcCHHHhc
Confidence 112234567799999999999999999
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-27 Score=243.92 Aligned_cols=183 Identities=24% Similarity=0.389 Sum_probs=137.6
Q ss_pred hcCCCcccccccCCccEEEEEEe--------cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCC
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI--------HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHI-RHRNLIKIISSCSND 495 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~--------~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 495 (628)
.++|...+.||+|+||.||+|+. .++..||||+++.. .....+.+.+|+++++++ +|||||+++++|..+
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 46788889999999999999975 24568999999754 334567799999999999 899999999987532
Q ss_pred Ccc-----------------------------------------------------------------------------
Q 037488 496 DFK----------------------------------------------------------------------------- 498 (628)
Q Consensus 496 ~~~----------------------------------------------------------------------------- 498 (628)
+..
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~ 239 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTEN 239 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTT
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhEEECCC
Confidence 100
Q ss_pred -----ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHH
Q 037488 499 -----ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHW 572 (628)
Q Consensus 499 -----~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~ 572 (628)
+|||+|+...............||+.|+|||++.+..|+.++|||||||++|||+| |+.||.+.... .....
T Consensus 240 ~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~--~~~~~ 317 (370)
T 2psq_A 240 NVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE--ELFKL 317 (370)
T ss_dssp CCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHH
T ss_pred CCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHH--HHHHH
Confidence 39999986644332222344568899999999999999999999999999999999 99999753221 11111
Q ss_pred HHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 573 VNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.... .....+..++.++.+++.+||+.||++|||+.|+
T Consensus 318 ~~~~------------------~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~el 355 (370)
T 2psq_A 318 LKEG------------------HRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQL 355 (370)
T ss_dssp HHTT------------------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HhcC------------------CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 1100 0112334567789999999999999999998764
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.5e-28 Score=245.25 Aligned_cols=183 Identities=20% Similarity=0.213 Sum_probs=122.5
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
..+.|...+.||+|+||.||+|+. .+++.||||+++... ..+.+.+|++++++++||||++++++|..++..
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 128 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE 128 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence 356789999999999999999997 468899999997543 335678899999999999999999987654311
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+++......
T Consensus 129 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~--- 205 (349)
T 2w4o_A 129 LVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQV--- 205 (349)
T ss_dssp CCCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC------------
T ss_pred eCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCccc---
Confidence 3999988653321
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
.....+||+.|+|||++.+..++.++|||||||++|||++|+.||............... ....
T Consensus 206 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~----------------~~~~ 269 (349)
T 2w4o_A 206 LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILN----------------CEYY 269 (349)
T ss_dssp -------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHT----------------TCCC
T ss_pred ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHh----------------CCCc
Confidence 224467999999999999999999999999999999999999999653221111111111 0000
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.|+
T Consensus 270 ~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~ 303 (349)
T 2w4o_A 270 FISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQA 303 (349)
T ss_dssp CCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred cCCchhhhCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 1111223456779999999999999999998653
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-27 Score=236.46 Aligned_cols=199 Identities=22% Similarity=0.233 Sum_probs=134.6
Q ss_pred cCCCcccccccCCccEEEEEEecCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
++|...+.||+|+||.||+|+..+|+.||||++.... ....+.+.+|++++++++||||+++++++..++..
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 5788899999999999999998889999999996543 22346788999999999999999999988654321
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+|+...... .....
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~ 159 (288)
T 1ob3_A 82 LDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPV--RKYTH 159 (288)
T ss_dssp CSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------
T ss_pred cCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccccccCccc--ccccc
Confidence 3999998653221 12234
Q ss_pred ccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC---cccee-----ecccc
Q 037488 519 TLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI---SVMKV-----VDAHL 589 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~ 589 (628)
..||+.|+|||++.+. .++.++||||+||++|||++|++||....... ............ .+... .++..
T Consensus 160 ~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (288)
T 1ob3_A 160 EIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEAD-QLMRIFRILGTPNSKNWPNVTELPKYDPNF 238 (288)
T ss_dssp --CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTSTTGGGSTTCCTTC
T ss_pred ccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHHCCCChhhchhhhccccccccc
Confidence 5799999999998764 58999999999999999999999997532211 111111111110 00000 00000
Q ss_pred cCCcc-cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 LSQED-KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 ~~~~~-~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+ .........+.++.+++.+||+.||++|||+.|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~ 278 (288)
T 1ob3_A 239 TVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQA 278 (288)
T ss_dssp CCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred ccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHH
Confidence 00000 0011123456789999999999999999998763
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-28 Score=250.56 Aligned_cols=183 Identities=26% Similarity=0.400 Sum_probs=137.0
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.++|...+.||+|+||.||+|+. .+++.||||+++... ....+.|.+|++++++++|||||+++++|..++..
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 192 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME 192 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEE
Confidence 45778889999999999999998 479999999987542 33455788999999999999999999998754321
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+...........
T Consensus 193 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~ 272 (377)
T 3cbl_A 193 LVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASG 272 (377)
T ss_dssp CCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCS
T ss_pred cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecC
Confidence 499999864332111111
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
....+|+.|+|||++.++.|+.++|||||||++|||+| |+.||...... .....+.. ..
T Consensus 273 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~--~~~~~~~~------------------~~ 332 (377)
T 3cbl_A 273 GLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQ--QTREFVEK------------------GG 332 (377)
T ss_dssp SCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHH--HHHHHHHT------------------TC
T ss_pred CCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHc------------------CC
Confidence 22346888999999999999999999999999999999 99999753211 11111110 01
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+.+..++.++.+++.+||+.||++|||+.+|
T Consensus 333 ~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i 365 (377)
T 3cbl_A 333 RLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTI 365 (377)
T ss_dssp CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence 122334567789999999999999999998763
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-27 Score=236.88 Aligned_cols=201 Identities=20% Similarity=0.223 Sum_probs=124.5
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
..++|...+.||+|+||.||+|.. .+|+.||||+++... ....+.+.+|++++++++|||||++++++..++..
T Consensus 3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 82 (317)
T 2pmi_A 3 SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVF 82 (317)
T ss_dssp ----------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEE
T ss_pred cccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEE
Confidence 457899999999999999999987 579999999997543 22346688999999999999999999987653211
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||+|+......
T Consensus 83 e~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~ 162 (317)
T 2pmi_A 83 EFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPV 162 (317)
T ss_dssp ECCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCSSCEETTSCC
T ss_pred EecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECcCccceecCCCc
Confidence 3999998653322
Q ss_pred cccccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcC--Cccceee---
Q 037488 512 QSLIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLP--ISVMKVV--- 585 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~--- 585 (628)
. .....+||+.|+|||++.+. .|+.++||||+||++|||++|+.||...... ............ ......+
T Consensus 163 ~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~ 239 (317)
T 2pmi_A 163 N--TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDE-EQLKLIFDIMGTPNESLWPSVTKL 239 (317)
T ss_dssp C--CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCSCCTTTCGGGGGC
T ss_pred c--cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHhCCCChhHhhhhhhh
Confidence 1 22445799999999999764 6899999999999999999999999753221 111112111110 0000000
Q ss_pred ---cccccCCcc------cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 ---DAHLLSQED------KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ---~~~~~~~~~------~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+....... .....+...+.++.+++.+||+.||++|||+.|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~ 291 (317)
T 2pmi_A 240 PKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQA 291 (317)
T ss_dssp TTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred hhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHH
Confidence 000000000 0011122356789999999999999999998763
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-27 Score=234.02 Aligned_cols=183 Identities=18% Similarity=0.286 Sum_probs=138.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
.++|...+.||+|+||.||+|.. .+|+.||+|++.... ....+.+.+|++++++++||||+++++++..+...
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 57899999999999999999987 569999999997543 34457788999999999999999999987654321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||++.......
T Consensus 85 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~-- 162 (284)
T 3kk8_A 85 DLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSE-- 162 (284)
T ss_dssp CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSC--
T ss_pred ecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCc--
Confidence 3999987654322
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
......||+.|+|||++.+..++.++||||+||++|||++|+.||...... ........ ...
T Consensus 163 -~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~--~~~~~~~~---------------~~~ 224 (284)
T 3kk8_A 163 -AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH--RLYAQIKA---------------GAY 224 (284)
T ss_dssp -BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHH---------------TCC
T ss_pred -cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchh--HHHHHHHh---------------ccc
Confidence 224467999999999999999999999999999999999999999653211 11111100 001
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+..++.++.+++.+||+.||++|||+.|+
T Consensus 225 ~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~ 259 (284)
T 3kk8_A 225 DYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQA 259 (284)
T ss_dssp CCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred cCCchhhcccCHHHHHHHHHHcccChhhCCCHHHH
Confidence 11111223456779999999999999999998763
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-27 Score=249.18 Aligned_cols=185 Identities=20% Similarity=0.269 Sum_probs=130.7
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--------hhHHHHHHHHHHHhhcccCCCcceeeeeccCC
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--------REAFKNFDIECDMMKHIRHRNLIKIISSCSND 495 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 495 (628)
..++|...+.||+|+||.||+|.. .+++.||||++.... ......+.+|++++++++|||||++++++..+
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~ 212 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE 212 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESS
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecC
Confidence 457899999999999999999987 678999999997532 11223578999999999999999999887543
Q ss_pred Ccc--------------------------------------------------------------------ccccccccc
Q 037488 496 DFK--------------------------------------------------------------------ADFGMAKPL 507 (628)
Q Consensus 496 ~~~--------------------------------------------------------------------~DFGla~~~ 507 (628)
+.. +|||+|+..
T Consensus 213 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~ 292 (419)
T 3i6u_A 213 DYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL 292 (419)
T ss_dssp EEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSC
T ss_pred ceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeecccceec
Confidence 211 399999865
Q ss_pred cccCcccccccccccccccCcccccc---CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcccee
Q 037488 508 LKEDQSLIQTQTLATIGYMAPEYGRE---GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKV 584 (628)
Q Consensus 508 ~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (628)
.... .....+||+.|+|||++.+ ..|+.++||||+||++|||++|++||....... ........
T Consensus 293 ~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~-~~~~~i~~--------- 359 (419)
T 3i6u_A 293 GETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQV-SLKDQITS--------- 359 (419)
T ss_dssp C--------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSC-CHHHHHHT---------
T ss_pred CCCc---cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchH-HHHHHHhc---------
Confidence 4322 2245679999999999864 568999999999999999999999997543222 22211111
Q ss_pred ecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 585 VDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+..+..++.++.+++.+||+.||++|||+.|+
T Consensus 360 ------~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~ 397 (419)
T 3i6u_A 360 ------GKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEA 397 (419)
T ss_dssp ------TCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred ------CCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHH
Confidence 11111122334567789999999999999999998753
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-27 Score=236.57 Aligned_cols=180 Identities=16% Similarity=0.162 Sum_probs=116.2
Q ss_pred ccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhccc-CCCcceeeeeccCCCcc-----------
Q 037488 432 NNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIR-HRNLIKIISSCSNDDFK----------- 498 (628)
Q Consensus 432 ~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~----------- 498 (628)
.+.||+|+||.||+|.. .+|+.||||++... ....+.+|+++++.++ |||||++++++.++...
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 37899999999999987 57999999999643 2345678999999997 99999999987654321
Q ss_pred ----------------------------------------------------------ccccccccccccCccccccccc
Q 037488 499 ----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTL 520 (628)
Q Consensus 499 ----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~ 520 (628)
+|||+|+...... ......+
T Consensus 93 L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~ 170 (325)
T 3kn6_A 93 LFERIKKKKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDN--QPLKTPC 170 (325)
T ss_dssp HHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-----------
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCC--CcccccC
Confidence 3999998654332 2234567
Q ss_pred ccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCC--ccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 521 ATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGE--MTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 521 gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
||+.|+|||++.+..|+.++||||+||++|||++|+.||....... .......... ..+.......
T Consensus 171 ~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i------------~~~~~~~~~~ 238 (325)
T 3kn6_A 171 FTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKI------------KKGDFSFEGE 238 (325)
T ss_dssp -------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHH------------TTTCCCCCSH
T ss_pred CCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHH------------HcCCCCCCcc
Confidence 9999999999999999999999999999999999999997533211 1111111111 1111112222
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+..++.++++++.+||+.||++|||+.|+
T Consensus 239 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~el 268 (325)
T 3kn6_A 239 AWKNVSQEAKDLIQGLLTVDPNKRLKMSGL 268 (325)
T ss_dssp HHHTSCHHHHHHHHHHHCCCTTTCCCTTTS
T ss_pred cccCCCHHHHHHHHHHCCCChhHCCCHHHH
Confidence 334567789999999999999999999886
|
| >3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-27 Score=247.76 Aligned_cols=138 Identities=22% Similarity=0.249 Sum_probs=102.1
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhccc-CCCcceeeeeccCCCc---
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIR-HRNLIKIISSCSNDDF--- 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~--- 497 (628)
..++|...+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+.+++++. |||||++++++..++.
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~ 86 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV 86 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence 457899999999999999999987 67999999998542 3445667889999999997 9999999998854321
Q ss_pred c---------------------------------------------------------------ccccccccccccC---
Q 037488 498 K---------------------------------------------------------------ADFGMAKPLLKED--- 511 (628)
Q Consensus 498 ~---------------------------------------------------------------~DFGla~~~~~~~--- 511 (628)
. +|||+|+......
T Consensus 87 ~lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~ 166 (388)
T 3oz6_A 87 YLVFDYMETDLHAVIRANILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVT 166 (388)
T ss_dssp EEEEECCSEEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCC
T ss_pred EEEecccCcCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCccccccccccccc
Confidence 0 4999998653210
Q ss_pred ----------------cccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcc
Q 037488 512 ----------------QSLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEI 562 (628)
Q Consensus 512 ----------------~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~ 562 (628)
.....+..+||++|+|||++.+ ..|+.++||||+||++|||++|++||.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 234 (388)
T 3oz6_A 167 NNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGS 234 (388)
T ss_dssp CCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred ccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCC
Confidence 0112244679999999999987 67999999999999999999999999753
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-27 Score=236.33 Aligned_cols=200 Identities=15% Similarity=0.200 Sum_probs=140.9
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.+.|...+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|++++++++||||+++++++......
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence 45788899999999999999987 569999999997543 23356788999999999999999999876542200
Q ss_pred ----------------------------------------------------------------------cccccccccc
Q 037488 499 ----------------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 499 ----------------------------------------------------------------------~DFGla~~~~ 508 (628)
+|||+|+...
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~ 167 (319)
T 4euu_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE 167 (319)
T ss_dssp EECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECC
T ss_pred EeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCCCceecC
Confidence 3999998764
Q ss_pred ccCcccccccccccccccCccccc--------cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHH--HHhhcC
Q 037488 509 KEDQSLIQTQTLATIGYMAPEYGR--------EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHW--VNDLLP 578 (628)
Q Consensus 509 ~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~--~~~~~~ 578 (628)
.... .....||+.|+|||++. +..++.++|||||||++|||+||+.||............. .....+
T Consensus 168 ~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p 244 (319)
T 4euu_A 168 DDEQ---FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKP 244 (319)
T ss_dssp TTCC---BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCC
T ss_pred CCCc---eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCC
Confidence 4322 24567999999999986 5679999999999999999999999997533222221111 111122
Q ss_pred Cccceeecccc------cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 579 ISVMKVVDAHL------LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 579 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+.... ..............+..+.+++.+||+.||++|||++|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~el 300 (319)
T 4euu_A 245 SGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQF 300 (319)
T ss_dssp TTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHH
T ss_pred cccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHh
Confidence 11111111000 001111223345677889999999999999999998763
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-27 Score=240.81 Aligned_cols=178 Identities=25% Similarity=0.340 Sum_probs=133.6
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
...|...+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|++++++++|||||+++++|..++..
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 132 (348)
T 1u5q_A 53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV 132 (348)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence 34588889999999999999986 67999999999753 233456789999999999999999999987654311
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+.....
T Consensus 133 ~e~~~g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~----- 207 (348)
T 1u5q_A 133 MEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA----- 207 (348)
T ss_dssp EECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB-----
T ss_pred EecCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC-----
Confidence 499999865322
Q ss_pred cccccccccccCccccc---cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 516 QTQTLATIGYMAPEYGR---EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~---~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
...+||+.|+|||++. ++.|+.++|||||||++|||++|+.||....... ......... .
T Consensus 208 -~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~-~~~~~~~~~---------~------ 270 (348)
T 1u5q_A 208 -NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYHIAQNE---------S------ 270 (348)
T ss_dssp -CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHSC---------C------
T ss_pred -CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHhcC---------C------
Confidence 3467999999999984 5679999999999999999999999996532110 011111000 0
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++.+++.+||+.||++|||+.|+
T Consensus 271 ---~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l 303 (348)
T 1u5q_A 271 ---PALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVL 303 (348)
T ss_dssp ---CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ---CCCCCCCCCHHHHHHHHHHcccChhhCcCHHHH
Confidence 001122345679999999999999999998753
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-27 Score=242.50 Aligned_cols=183 Identities=23% Similarity=0.335 Sum_probs=129.8
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcE----EEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGME----VAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
.++|...+.||+|+||.||+|++ .+|+. ||+|.+.... ....+.+.+|+.++++++|||||+++++|..+...
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 93 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQL 93 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSSEEE
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEE
Confidence 45688889999999999999986 44554 5788775432 33457789999999999999999999988664321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+........
T Consensus 94 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~ 173 (327)
T 3poz_A 94 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE 173 (327)
T ss_dssp EEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC-
T ss_pred EEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccCcceeEccCCccc
Confidence 399999876444333
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.......||+.|+|||++.+..|+.++|||||||++|||+| |+.||...... .........
T Consensus 174 ~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~~~~~---------------- 235 (327)
T 3poz_A 174 YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSILEKG---------------- 235 (327)
T ss_dssp ------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHHTT----------------
T ss_pred ccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHH--HHHHHHHcC----------------
Confidence 23334568999999999999999999999999999999999 99999753221 121111110
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.|+
T Consensus 236 --~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~el 269 (327)
T 3poz_A 236 --ERLPQPPICTIDVYMIMVKCWMIDADSRPKFREL 269 (327)
T ss_dssp --CCCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHH
T ss_pred --CCCCCCccCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 0111233456679999999999999999998763
|
| >1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-27 Score=239.13 Aligned_cols=182 Identities=19% Similarity=0.269 Sum_probs=137.2
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 498 (628)
...++|...+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|.+++..+ +||||+++++++.+++..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 4567899999999999999999997 579999999997542 23356678899999987 999999999887654321
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+|+......
T Consensus 94 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~- 172 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGD- 172 (345)
T ss_dssp EEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT-
T ss_pred EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhhhcccCC-
Confidence 4999998643222
Q ss_pred ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 513 SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
....+.+||+.|+|||++.+..|+.++||||+||++|||++|+.||.+... ....... ....
T Consensus 173 -~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~~i------------~~~~ 234 (345)
T 1xjd_A 173 -AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE-----EELFHSI------------RMDN 234 (345)
T ss_dssp -CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHH------------HHCC
T ss_pred -CcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH-----HHHHHHH------------HhCC
Confidence 123556899999999999999999999999999999999999999965321 1111110 0000
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCC-CC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAK-EI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~-ev 628 (628)
...+..++.++.+++.+||+.||++||++. ||
T Consensus 235 ----~~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i 267 (345)
T 1xjd_A 235 ----PFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDI 267 (345)
T ss_dssp ----CCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCG
T ss_pred ----CCCCcccCHHHHHHHHHHhcCCHhHcCCChHHH
Confidence 112233566799999999999999999986 53
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-27 Score=239.79 Aligned_cols=178 Identities=22% Similarity=0.232 Sum_probs=134.6
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|...+.||+|+||.||+|+. .+++.||+|++.... ....+.+.+|+++++.++|||||++++++...+..
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv 93 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV 93 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 35788899999999999999987 568999999997532 23356788999999999999999999987654321
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+...... .
T Consensus 94 ~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~---~ 170 (384)
T 4fr4_A 94 VDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRET---Q 170 (384)
T ss_dssp ECCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTC---C
T ss_pred EecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEeccceeeeccCCC---c
Confidence 4999998754332 2
Q ss_pred cccccccccccCcccccc---CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 516 QTQTLATIGYMAPEYGRE---GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~---~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
..+.+||+.|+|||++.+ ..|+.++||||+||++|||++|+.||....... ......... .
T Consensus 171 ~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~--~~~~~~~~~------------~-- 234 (384)
T 4fr4_A 171 ITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTS--SKEIVHTFE------------T-- 234 (384)
T ss_dssp BCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSC--HHHHHHHHH------------H--
T ss_pred eeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCcc--HHHHHHHHh------------h--
Confidence 356789999999999874 458999999999999999999999997532221 111111100 0
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
.....+..++.++.+++.+||+.||++||+
T Consensus 235 --~~~~~p~~~s~~~~~li~~lL~~dP~~R~s 264 (384)
T 4fr4_A 235 --TVVTYPSAWSQEMVSLLKKLLEPNPDQRFS 264 (384)
T ss_dssp --CCCCCCTTSCHHHHHHHHHHSCSSGGGSCC
T ss_pred --cccCCCCcCCHHHHHHHHHHhcCCHhHhcc
Confidence 001123345677999999999999999998
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-27 Score=232.47 Aligned_cols=181 Identities=27% Similarity=0.395 Sum_probs=134.0
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchh-------HHHHHHHHHHHhhcccCCCcceeeeeccCCCc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYRE-------AFKNFDIECDMMKHIRHRNLIKIISSCSNDDF 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~-------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 497 (628)
.++|...+.||+|+||.||+|+. .+++.||||++...... ..+.+.+|++++++++||||+++++++.+...
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 97 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPPR 97 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTTE
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCCe
Confidence 46788889999999999999987 67999999998643211 12678999999999999999999998754321
Q ss_pred c------------------------------------------------------------------------ccccccc
Q 037488 498 K------------------------------------------------------------------------ADFGMAK 505 (628)
Q Consensus 498 ~------------------------------------------------------------------------~DFGla~ 505 (628)
. +|||+|+
T Consensus 98 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~ 177 (287)
T 4f0f_A 98 MVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQ 177 (287)
T ss_dssp EEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCB
T ss_pred EEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCCCccc
Confidence 1 3788776
Q ss_pred cccccCcccccccccccccccCccccc--cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccce
Q 037488 506 PLLKEDQSLIQTQTLATIGYMAPEYGR--EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMK 583 (628)
Q Consensus 506 ~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (628)
..... .....||+.|+|||++. +..++.++||||+||++|||++|+.||.................
T Consensus 178 ~~~~~-----~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~------- 245 (287)
T 4f0f_A 178 QSVHS-----VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREE------- 245 (287)
T ss_dssp CCSSC-----EECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHS-------
T ss_pred ccccc-----ccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhcc-------
Confidence 43221 23467999999999984 45689999999999999999999999976433222111111110
Q ss_pred eecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 584 VVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+..++.++.+++.+||+.||++|||+.|+
T Consensus 246 ----------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 280 (287)
T 4f0f_A 246 ----------GLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYI 280 (287)
T ss_dssp ----------CCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ----------CCCCCCCcccCHHHHHHHHHHhcCChhhCcCHHHH
Confidence 01112334556779999999999999999998763
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=220.73 Aligned_cols=210 Identities=23% Similarity=0.276 Sum_probs=170.1
Q ss_pred CCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEc
Q 037488 159 TNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHL 238 (628)
Q Consensus 159 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 238 (628)
++|+.|++++|.+++..+..|..+++|++|++++|++.+..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46788888888887666667888888888888888888777777888888888888888888777778888888888888
Q ss_pred cCCcCCcCCC-CccCCCCCcEEEcCCCCCcCC-CCCcccCCccccEEEcCCCcCCCCCccccCCCCCCC----EEeCCCC
Q 037488 239 GSNQITSIPS-TLLNLKDILYLNLSSNFFTGP-LPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQ----YLFLEYN 312 (628)
Q Consensus 239 ~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~l~~n 312 (628)
++|.++.++. .+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+.+|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 8888887765 567788888888888888764 477888888888888888888877777777666666 8999999
Q ss_pred cCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCC
Q 037488 313 RLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPRE 369 (628)
Q Consensus 313 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~ 369 (628)
++++..+..+.. .+|+.|++++|.++++.+..+..+++|+.|++++|++.+..+..
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 998666655544 47999999999999887777888999999999999999887654
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-27 Score=244.55 Aligned_cols=183 Identities=22% Similarity=0.345 Sum_probs=136.5
Q ss_pred hcCCCcccccccCCccEEEEEEe------cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI------HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
.++|...+.||+|+||.||+|++ .+++.||||+++.. .......+.+|+.++++++|||||++++++..+...
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 35688889999999999999984 24778999999653 344456789999999999999999999987543211
Q ss_pred ----------------------------------------------------------------------------cccc
Q 037488 499 ----------------------------------------------------------------------------ADFG 502 (628)
Q Consensus 499 ----------------------------------------------------------------------------~DFG 502 (628)
+|||
T Consensus 150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG 229 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFG 229 (367)
T ss_dssp EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCH
T ss_pred EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceEEECCCc
Confidence 3999
Q ss_pred ccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCcc
Q 037488 503 MAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISV 581 (628)
Q Consensus 503 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~ 581 (628)
+|+...............||+.|+|||++.+..|+.++|||||||++|||+| |+.||..... ......+...
T Consensus 230 ~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~--~~~~~~i~~~----- 302 (367)
T 3l9p_A 230 MARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--QEVLEFVTSG----- 302 (367)
T ss_dssp HHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHHHHHHHTT-----
T ss_pred cccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHcC-----
Confidence 9986543332223344578999999999999999999999999999999998 9999965321 1111111100
Q ss_pred ceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 582 MKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.||
T Consensus 303 -------------~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ei 336 (367)
T 3l9p_A 303 -------------GRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 336 (367)
T ss_dssp -------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred -------------CCCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHH
Confidence 0111233456779999999999999999998764
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-27 Score=252.01 Aligned_cols=182 Identities=19% Similarity=0.206 Sum_probs=136.1
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
.++|...+.||+|+||+||+|+. .+|+.||||++.... ......+.+|++++++++|||||++++++......
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 100 (486)
T 3mwu_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG 100 (486)
T ss_dssp HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence 45688999999999999999987 579999999996532 23456789999999999999999999987654321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+......
T Consensus 101 e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~-- 178 (486)
T 3mwu_A 101 ELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT-- 178 (486)
T ss_dssp CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC---
T ss_pred EcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCC--
Confidence 4999998654332
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
.....+||++|+|||++.+ .|+.++||||+||++|||++|++||.+... ...... ......
T Consensus 179 -~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~~~~------------i~~~~~ 239 (486)
T 3mwu_A 179 -KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE-----YDILKR------------VETGKY 239 (486)
T ss_dssp ----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHH------------HHHTCC
T ss_pred -ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHH------------HHhCCC
Confidence 2245679999999999875 599999999999999999999999965321 111111 011111
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+.+..++.++++++.+||+.||++|||+.|+
T Consensus 240 ~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~ 274 (486)
T 3mwu_A 240 AFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQC 274 (486)
T ss_dssp CSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred CCCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 11222334567789999999999999999998653
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-27 Score=235.55 Aligned_cols=182 Identities=21% Similarity=0.279 Sum_probs=130.8
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch--------------------------hHHHHHHHHHHHhh
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR--------------------------EAFKNFDIECDMMK 478 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--------------------------~~~~~~~~E~~~l~ 478 (628)
.++|...+.||+|+||.||+|+. .+|+.||||++..... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 46899999999999999999987 6789999999964321 11346889999999
Q ss_pred cccCCCcceeeeeccCCC--cc----------------------------------------------------------
Q 037488 479 HIRHRNLIKIISSCSNDD--FK---------------------------------------------------------- 498 (628)
Q Consensus 479 ~l~h~niv~l~~~~~~~~--~~---------------------------------------------------------- 498 (628)
+++||||+++++++.+.. ..
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~ 171 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVG 171 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEC
Confidence 999999999999876421 10
Q ss_pred -------ccccccccccccCcccccccccccccccCccccccCc---cCcccchhhHhHHHHHHhhCCCCCCcccCCCcc
Q 037488 499 -------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR---VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMT 568 (628)
Q Consensus 499 -------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~ 568 (628)
+|||+|+....... ......||+.|+|||++.+.. ++.++||||+||++|||++|+.||....
T Consensus 172 ~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~----- 244 (298)
T 2zv2_A 172 EDGHIKIADFGVSNEFKGSDA--LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER----- 244 (298)
T ss_dssp TTSCEEECCCTTCEECSSSSC--EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS-----
T ss_pred CCCCEEEecCCCccccccccc--cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc-----
Confidence 39999987543321 224567999999999998765 4789999999999999999999996521
Q ss_pred HHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 569 LKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+....... .. ..+....++.++.+++.+||+.||++|||+.|+
T Consensus 245 ~~~~~~~~~~~--------~~------~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~ 290 (298)
T 2zv2_A 245 IMCLHSKIKSQ--------AL------EFPDQPDIAEDLKDLITRMLDKNPESRIVVPEI 290 (298)
T ss_dssp HHHHHHHHHHC--------CC------CCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHH
T ss_pred HHHHHHHHhcc--------cC------CCCCccccCHHHHHHHHHHhhcChhhCCCHHHH
Confidence 11111110000 00 001112346679999999999999999998763
|
| >4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-27 Score=242.01 Aligned_cols=183 Identities=20% Similarity=0.234 Sum_probs=135.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc--
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~-- 498 (628)
.++|...+.||+|+||.||+|+. .+++.||+|+++... ....+.+.+|..++.++ +|||||++++++..++..
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 46788999999999999999987 568999999997542 23345578899999887 899999999987654321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+|+...... .
T Consensus 131 V~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~--~ 208 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG--D 208 (396)
T ss_dssp EEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT--C
T ss_pred EEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeecceeeecccCC--C
Confidence 4999998643322 2
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCc----cHHHHHHhhcCCccceeeccccc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEM----TLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
...+.+||+.|||||++.+..|+.++||||+||++|||++|++||........ ........ ...
T Consensus 209 ~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~------------i~~ 276 (396)
T 4dc2_A 209 TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQV------------ILE 276 (396)
T ss_dssp CBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHH------------HHH
T ss_pred ccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHH------------Hhc
Confidence 23567899999999999999999999999999999999999999964322110 01101100 000
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
. ....|..++.++.+++.+||+.||++||++.
T Consensus 277 ~----~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~ 308 (396)
T 4dc2_A 277 K----QIRIPRSLSVKAASVLKSFLNKDPKERLGCH 308 (396)
T ss_dssp C----CCCCCTTSCHHHHHHHHHHTCSCTTTSTTCS
T ss_pred c----ccCCCCcCCHHHHHHHHHHhcCCHhHcCCCC
Confidence 0 1123344567799999999999999999973
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-27 Score=249.13 Aligned_cols=130 Identities=22% Similarity=0.244 Sum_probs=92.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
.++|...+.||+|+||+||+|+. .+|+.||||++... .....+.+.+|++++++++|||||++++++...+.
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 47899999999999999999987 57999999999653 34456778999999999999999999998843211
Q ss_pred c-----------------------------------------------------------------ccccccccccccCc
Q 037488 498 K-----------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 498 ~-----------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
. +|||+|+.......
T Consensus 132 ~~lv~e~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~ 211 (458)
T 3rp9_A 132 LYVVLEIADSDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPEN 211 (458)
T ss_dssp EEEEECCCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTT
T ss_pred EEEEEeccccchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeecccccchhccCccc
Confidence 0 49999987542211
Q ss_pred c-------------------------cccccccccccccCcccc-ccCccCcccchhhHhHHHHHHhhC
Q 037488 513 S-------------------------LIQTQTLATIGYMAPEYG-REGRVSTNGDVYSFGIMLIETFTR 555 (628)
Q Consensus 513 ~-------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~DVwS~Gvvl~e~ltg 555 (628)
. ......+||++|||||++ .+..|+.++||||+||++|||++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 212 GNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp CCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred cccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 0 122446799999999986 456799999999999999999993
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-27 Score=251.70 Aligned_cols=182 Identities=24% Similarity=0.368 Sum_probs=138.8
Q ss_pred hhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
..++|...+.||+|+||.||+|....++.||||+++... ...+.|.+|++++++++|||||++++++..+...
T Consensus 186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~~~~lv~e~~ 264 (454)
T 1qcf_A 186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFM 264 (454)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEECCC
T ss_pred chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEeCCccEEEEeec
Confidence 356788889999999999999999878899999997543 2457799999999999999999999988643211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|+...... .....
T Consensus 265 ~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~-~~~~~ 343 (454)
T 1qcf_A 265 AKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE-YTARE 343 (454)
T ss_dssp TTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHH-HHTTC
T ss_pred CCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCc-eeccC
Confidence 4999998653321 11223
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...+|+.|+|||++.++.|+.++|||||||++|||+| |+.||.+.... .....+... ..
T Consensus 344 ~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~--~~~~~i~~~------------------~~ 403 (454)
T 1qcf_A 344 GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP--EVIRALERG------------------YR 403 (454)
T ss_dssp SSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHHHHHHHT------------------CC
T ss_pred CCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcC------------------CC
Confidence 3457889999999998999999999999999999999 99999753211 111111100 11
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+.+..++.++.+++.+||+.||++|||+.+|
T Consensus 404 ~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i 435 (454)
T 1qcf_A 404 MPRPENCPEELYNIMMRCWKNRPEERPTFEYI 435 (454)
T ss_dssp CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 22334567789999999999999999998753
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-27 Score=242.70 Aligned_cols=184 Identities=21% Similarity=0.239 Sum_probs=136.1
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~---- 498 (628)
..++|...+.||+|+||.||+|.. .+|+.||||+++.... .+.+|++++.++ +|||||++++++.+++..
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ 95 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT 95 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence 356789999999999999999987 5799999999975432 235688889888 799999999987654321
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+|+.......
T Consensus 96 E~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~ 175 (342)
T 2qr7_A 96 ELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENG 175 (342)
T ss_dssp CCCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTC
T ss_pred eCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCC
Confidence 39999986543322
Q ss_pred ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 513 SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
...+.+||+.|+|||++.+..|+.++||||+||++|||++|+.||..... .....+.... ..+.
T Consensus 176 --~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~~~~~~~~i------------~~~~ 239 (342)
T 2qr7_A 176 --LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPD--DTPEEILARI------------GSGK 239 (342)
T ss_dssp --CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTT--SCHHHHHHHH------------HHCC
T ss_pred --ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCc--CCHHHHHHHH------------ccCC
Confidence 23456899999999999988899999999999999999999999975321 1122221111 0111
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+..++.++.+++.+||+.||++|||+.|+
T Consensus 240 ~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~i 275 (342)
T 2qr7_A 240 FSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALV 275 (342)
T ss_dssp CCCCSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred cccCccccccCCHHHHHHHHHHCCCChhHCcCHHHH
Confidence 111112233467789999999999999999998653
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-27 Score=232.40 Aligned_cols=181 Identities=18% Similarity=0.192 Sum_probs=136.5
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.++|...+.||+|+||.||+|.. .+++.||+|++........+.+.+|++++++++||||+++++++.++...
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMEL 87 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEec
Confidence 46788899999999999999987 56889999999866555567899999999999999999999987654321
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+...... .
T Consensus 88 ~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~---~ 164 (277)
T 3f3z_A 88 CTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGK---M 164 (277)
T ss_dssp CCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTS---C
T ss_pred cCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCcc---c
Confidence 3999988654332 2
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
.....||+.|+|||++.+. ++.++||||+||++|||++|+.||....... ...... ......
T Consensus 165 ~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-~~~~~~----------------~~~~~~ 226 (277)
T 3f3z_A 165 MRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDSE-VMLKIR----------------EGTFTF 226 (277)
T ss_dssp BCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHH----------------HCCCCC
T ss_pred hhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHHH-HHHHHH----------------hCCCCC
Confidence 2456799999999998754 9999999999999999999999996532111 011110 001111
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
....+..++.++.+++.+||+.||++|||+.|
T Consensus 227 ~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~ 258 (277)
T 3f3z_A 227 PEKDWLNVSPQAESLIRRLLTKSPKQRITSLQ 258 (277)
T ss_dssp CHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred CchhhhcCCHHHHHHHHHHccCChhhCcCHHH
Confidence 11122245677999999999999999999865
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-27 Score=237.96 Aligned_cols=183 Identities=20% Similarity=0.327 Sum_probs=133.9
Q ss_pred hcCCCcccccccCCccEEEEEEec----CCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH----YGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
.++|...+.||+|+||.||+|+.. .+..||||+++.. .....+.+.+|++++++++||||++++++|.+++..
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 127 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI 127 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence 457888899999999999999873 3456999999764 344567799999999999999999999987653321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+........
T Consensus 128 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~ 207 (325)
T 3kul_A 128 VTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDA 207 (325)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSSCEECC----C
T ss_pred EeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCcccccccCccc
Confidence 399999876433211
Q ss_pred -cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 514 -LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 514 -~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
.......||+.|+|||++.+..++.++|||||||++|||++ |+.||...... ........ .
T Consensus 208 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~-----~~~~~~~~------------~ 270 (325)
T 3kul_A 208 AYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNR-----DVISSVEE------------G 270 (325)
T ss_dssp CEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHH-----HHHHHHHT------------T
T ss_pred eeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHH-----HHHHHHHc------------C
Confidence 12233457889999999999999999999999999999999 99999653211 11111000 0
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.||
T Consensus 271 ---~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ei 304 (325)
T 3kul_A 271 ---YRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQI 304 (325)
T ss_dssp ---CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ---CCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHH
Confidence 0112233567789999999999999999998764
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-27 Score=239.73 Aligned_cols=185 Identities=19% Similarity=0.214 Sum_probs=126.9
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
..++|...+.||+|+||.||+|+. .+++.||||++..... ..+.+.+|+.+++.++|||||++++++..++..
T Consensus 18 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 96 (361)
T 3uc3_A 18 DSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIME 96 (361)
T ss_dssp CTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred CCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEE
Confidence 356799999999999999999987 5799999999975432 235678999999999999999999987653321
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+...... .
T Consensus 97 ~~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~---~ 173 (361)
T 3uc3_A 97 YASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHS---Q 173 (361)
T ss_dssp CCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC-----------
T ss_pred eCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCccccccccC---C
Confidence 4999988533221 1
Q ss_pred cccccccccccCccccccCccCcc-cchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTN-GDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~-~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
....+||++|+|||++.+..++.+ +||||+||++|||++|+.||....... ............ ..
T Consensus 174 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~~~~~~~~~------------~~- 239 (361)
T 3uc3_A 174 PKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPR-DYRKTIQRILSV------------KY- 239 (361)
T ss_dssp -------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CC-CHHHHHHHHHTT------------CC-
T ss_pred CCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHH-HHHHHHHHHhcC------------CC-
Confidence 244679999999999988888665 899999999999999999997643222 222222111110 00
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+....++.++.+|+.+||+.||++|||+.|+
T Consensus 240 -~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el 272 (361)
T 3uc3_A 240 -SIPDDIRISPECCHLISRIFVADPATRISIPEI 272 (361)
T ss_dssp -CCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred -CCCCcCCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 011111345679999999999999999998763
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-27 Score=234.69 Aligned_cols=182 Identities=21% Similarity=0.327 Sum_probs=131.0
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|...+.||+|+||.||+|+. .+++.||+|++... .....+.+.+|+.++++++||||+++++++..++..
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 46789999999999999999986 57999999998542 334467789999999999999999999988654321
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+...... ...
T Consensus 90 ~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~ 168 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETS-LTQ 168 (294)
T ss_dssp EECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC--------
T ss_pred EeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCCcccccccc-ccc
Confidence 3999998654322 112
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
....+||+.|+|||++.+..++.++||||+||++|||+||+.||.+.... .......... ....
T Consensus 169 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~-----~~~~~~~~~~-----------~~~~ 232 (294)
T 4eqm_A 169 TNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAV-----SIAIKHIQDS-----------VPNV 232 (294)
T ss_dssp ------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHH-----HHHHHHHSSC-----------CCCH
T ss_pred cCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH-----HHHHHHhhcc-----------CCCc
Confidence 23457999999999999999999999999999999999999999753211 1111110000 0011
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
....+..++..+.+++.+||+.||++||+
T Consensus 233 ~~~~~~~~~~~l~~li~~~l~~dp~~R~~ 261 (294)
T 4eqm_A 233 TTDVRKDIPQSLSNVILRATEKDKANRYK 261 (294)
T ss_dssp HHHSCTTSCHHHHHHHHHHSCSSGGGSCS
T ss_pred chhcccCCCHHHHHHHHHHhcCCHhHccc
Confidence 11223345677999999999999999994
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-26 Score=228.39 Aligned_cols=185 Identities=22% Similarity=0.290 Sum_probs=139.1
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.++|...+.||+|+||.||+|.. .+++.||||+++... ....+.+.+|+.+++.++||||+++++++.++...
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence 46788999999999999999987 579999999997543 33456789999999999999999999987643211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++............
T Consensus 86 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~ 165 (276)
T 2yex_A 86 YCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 165 (276)
T ss_dssp CCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBC
T ss_pred ecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhccc
Confidence 3999998654332222234
Q ss_pred cccccccccCccccccCcc-CcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 518 QTLATIGYMAPEYGREGRV-STNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~-~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...||+.|+|||++.+..+ +.++||||+||++|||++|+.||............+..... .
T Consensus 166 ~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~------------------~ 227 (276)
T 2yex_A 166 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKT------------------Y 227 (276)
T ss_dssp CCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCT------------------T
T ss_pred CCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhccc------------------c
Confidence 5679999999999988775 78999999999999999999999764433222322221100 0
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+...+.++.+++.+||+.||++|||+.|+
T Consensus 228 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i 259 (276)
T 2yex_A 228 LNPWKKIDSAPLALLHKILVENPSARITIPDI 259 (276)
T ss_dssp STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred cCchhhcCHHHHHHHHHHCCCCchhCCCHHHH
Confidence 11122346678999999999999999998753
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-27 Score=241.37 Aligned_cols=189 Identities=20% Similarity=0.324 Sum_probs=140.0
Q ss_pred HHHHhhcCCCcccccccCCccEEEEEEe------cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcc-cCCCcceeeeec
Q 037488 421 ELFQATNGFSENNLIDRGGIGYVYKRRI------HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHI-RHRNLIKIISSC 492 (628)
Q Consensus 421 ~l~~~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~ 492 (628)
.+....++|...+.||+|+||.||+|++ .+++.||||+++... ....+.+.+|+++++++ +|||||+++++|
T Consensus 16 ~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~ 95 (359)
T 3vhe_A 16 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGAC 95 (359)
T ss_dssp HHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred cccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeee
Confidence 3445678899999999999999999973 356899999997643 34456789999999999 899999999876
Q ss_pred cCCCc---------------------------------------------------------------------------
Q 037488 493 SNDDF--------------------------------------------------------------------------- 497 (628)
Q Consensus 493 ~~~~~--------------------------------------------------------------------------- 497 (628)
...+.
T Consensus 96 ~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (359)
T 3vhe_A 96 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSD 175 (359)
T ss_dssp CSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC----------------------------------------------
T ss_pred ecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccch
Confidence 43110
Q ss_pred --------------c--------------------------------------------ccccccccccccCcccccccc
Q 037488 498 --------------K--------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 498 --------------~--------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
. +|||+|+..............
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~ 255 (359)
T 3vhe_A 176 VEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDA 255 (359)
T ss_dssp --------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--C
T ss_pred hhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhcccc
Confidence 1 399999866444333334456
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
.||+.|+|||++.+..|+.++|||||||++|||+| |+.||........ ........ ....
T Consensus 256 ~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~-~~~~~~~~------------------~~~~ 316 (359)
T 3vhe_A 256 RLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE-FCRRLKEG------------------TRMR 316 (359)
T ss_dssp EECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH-HHHHHHHT------------------CCCC
T ss_pred CCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHH-HHHHHHcC------------------CCCC
Confidence 79999999999999999999999999999999999 9999976432221 11111110 0111
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+..++.++.+++.+||+.||++|||+.||
T Consensus 317 ~~~~~~~~l~~li~~~l~~dP~~Rps~~el 346 (359)
T 3vhe_A 317 APDYTTPEMYQTMLDCWHGEPSQRPTFSEL 346 (359)
T ss_dssp CCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCCCHHHHHHHHHHccCChhhCCCHHHH
Confidence 223456679999999999999999998764
|
| >3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-27 Score=239.53 Aligned_cols=178 Identities=20% Similarity=0.245 Sum_probs=131.2
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc-
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~- 498 (628)
..++|...+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|.++++.+ +|||||++++++..++..
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 100 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF 100 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence 357899999999999999999987 579999999997542 33456678999999988 799999999987654321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+......
T Consensus 101 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~-- 178 (353)
T 3txo_A 101 FVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNG-- 178 (353)
T ss_dssp EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC----
T ss_pred EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccccceeecccCC--
Confidence 4999998643322
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
....+.+||+.|||||++.+..|+.++||||+||++|||++|++||..... ....... ....
T Consensus 179 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~-----~~~~~~i------------~~~~- 240 (353)
T 3txo_A 179 VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENE-----DDLFEAI------------LNDE- 240 (353)
T ss_dssp -------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHH------------HHCC-
T ss_pred ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCH-----HHHHHHH------------HcCC-
Confidence 223456899999999999999999999999999999999999999975321 1111111 0011
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
...+...+.++.+++.+||+.||++||++
T Consensus 241 ---~~~p~~~~~~~~~li~~lL~~dP~~R~~~ 269 (353)
T 3txo_A 241 ---VVYPTWLHEDATGILKSFMTKNPTMRLGS 269 (353)
T ss_dssp ---CCCCTTSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred ---CCCCCCCCHHHHHHHHHHhhhCHHHccCC
Confidence 11223356679999999999999999997
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-27 Score=236.45 Aligned_cols=183 Identities=16% Similarity=0.203 Sum_probs=137.0
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch------hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR------EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
.+.|...+.||+|+||.||+|+. .+|+.||||+++.... ...+.+.+|+.++++++||||+++++++.+++..
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 90 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV 90 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence 45688899999999999999987 5799999999975321 1356789999999999999999999987653311
Q ss_pred ----------------------------------------------------------------------cccccccccc
Q 037488 499 ----------------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 499 ----------------------------------------------------------------------~DFGla~~~~ 508 (628)
+|||+++...
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~ 170 (321)
T 2a2a_A 91 VLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE 170 (321)
T ss_dssp EEEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECC
T ss_pred EEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCccceecC
Confidence 3899888654
Q ss_pred ccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccc
Q 037488 509 KEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588 (628)
Q Consensus 509 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (628)
... ......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ........
T Consensus 171 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~i~----------- 231 (321)
T 2a2a_A 171 DGV---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK-----QETLANIT----------- 231 (321)
T ss_dssp TTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH-----HHHHHHHH-----------
T ss_pred ccc---cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCH-----HHHHHHHH-----------
Confidence 322 12345799999999999999999999999999999999999999965321 11111100
Q ss_pred ccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..........+...+.++.+++.+||+.||++|||+.|+
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~ 270 (321)
T 2a2a_A 232 -SVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEA 270 (321)
T ss_dssp -TTCCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHH
T ss_pred -hcccccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 001111122233456779999999999999999998753
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-27 Score=235.53 Aligned_cols=194 Identities=21% Similarity=0.347 Sum_probs=135.7
Q ss_pred hcCCCcccccccCCccEEEEEEe-----cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc--c
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-----HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--K 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--~ 498 (628)
.++|+..+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||++++++|...+. .
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 46788899999999999999983 3689999999987666667889999999999999999999997642110 0
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||+|+......
T Consensus 89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 168 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDK 168 (295)
T ss_dssp EEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCSCC------
T ss_pred EEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEccCcccccccCCc
Confidence 3999998754332
Q ss_pred cc-cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccc-----eee
Q 037488 512 QS-LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVM-----KVV 585 (628)
Q Consensus 512 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 585 (628)
.. .......||..|+|||++.+..++.++|||||||++|||+||..|+..... .+.......... ...
T Consensus 169 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 242 (295)
T 3ugc_A 169 EFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA------EFMRMIGNDKQGQMIVFHLI 242 (295)
T ss_dssp -------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHH------HHHHHHCTTCCTHHHHHHHH
T ss_pred ceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChH------HHHhhhcCccccchhHHHHH
Confidence 21 122334588899999999999999999999999999999999999864211 111000000000 000
Q ss_pred cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+. .. .......+..++.++.+++.+||+.||++|||+.|+
T Consensus 243 ~~-~~--~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el 282 (295)
T 3ugc_A 243 EL-LK--NNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDL 282 (295)
T ss_dssp HH-HH--TTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred HH-Hh--ccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 00 00 011223345677889999999999999999998764
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-27 Score=245.60 Aligned_cols=136 Identities=23% Similarity=0.310 Sum_probs=105.7
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF---- 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 497 (628)
..++|...+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|++++++++|||||++++++.....
T Consensus 24 i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 103 (432)
T 3n9x_A 24 VPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD 103 (432)
T ss_dssp CCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred ecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence 467899999999999999999987 67899999999753 34456788999999999999999999998865421
Q ss_pred -c-----------------------------------------------------------------ccccccccccccC
Q 037488 498 -K-----------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 498 -~-----------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
. +|||+|+......
T Consensus 104 ~~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~ 183 (432)
T 3n9x_A 104 ELYIVLEIADSDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEK 183 (432)
T ss_dssp CEEEEEECCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC----
T ss_pred eEEEEEecCCcCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCCcccccccc
Confidence 0 4999998764322
Q ss_pred cc--------------------cccccccccccccCcccc-ccCccCcccchhhHhHHHHHHhhCCCCCC
Q 037488 512 QS--------------------LIQTQTLATIGYMAPEYG-REGRVSTNGDVYSFGIMLIETFTRKKPTD 560 (628)
Q Consensus 512 ~~--------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~ 560 (628)
.. ......+||++|+|||++ .+..|+.++||||+||++|||++|..||.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~ 253 (432)
T 3n9x_A 184 DTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI 253 (432)
T ss_dssp ---------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred cccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence 11 123556899999999986 55669999999999999999998655553
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-27 Score=253.17 Aligned_cols=182 Identities=19% Similarity=0.258 Sum_probs=137.4
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.+.|...+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|++++++++|||||++++++......
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 45688899999999999999987 579999999996532 33457789999999999999999999987654321
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+|+......
T Consensus 105 ~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~- 183 (484)
T 3nyv_A 105 GEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASK- 183 (484)
T ss_dssp ECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCC-
T ss_pred EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEccccc-
Confidence 3999998654332
Q ss_pred ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 513 SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.....+||++|+|||++.+ .|+.++||||+||++|||++|++||..... ......+ ....
T Consensus 184 --~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i---------------~~~~ 243 (484)
T 3nyv_A 184 --KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANE--YDILKKV---------------EKGK 243 (484)
T ss_dssp --SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHH---------------HHCC
T ss_pred --ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCH--HHHHHHH---------------HcCC
Confidence 2244579999999999876 699999999999999999999999975321 1111111 0111
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+.+..++.++++++.+||+.||++|||+.|+
T Consensus 244 ~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~ 279 (484)
T 3nyv_A 244 YTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDA 279 (484)
T ss_dssp CCCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHH
Confidence 111222334567789999999999999999998753
|
| >3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-26 Score=234.88 Aligned_cols=183 Identities=20% Similarity=0.229 Sum_probs=136.2
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc--
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~-- 498 (628)
.++|...+.||+|+||.||+|+. .+|+.||+|+++.. .....+.+.+|+.+++++ +|||||++++++..++..
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 87 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 87 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence 35788899999999999999997 57999999999754 234456788999999988 899999999987654321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+|+...... .
T Consensus 88 v~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~--~ 165 (345)
T 3a8x_A 88 VIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG--D 165 (345)
T ss_dssp EECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTT--C
T ss_pred EEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEeccccccccCCC--C
Confidence 4999998643222 1
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCC----ccHHHHHHhhcCCccceeeccccc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGE----MTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
...+.+||+.|+|||++.+..|+.++||||+||++|||++|+.||....... ......... ...
T Consensus 166 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~------------i~~ 233 (345)
T 3a8x_A 166 TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQV------------ILE 233 (345)
T ss_dssp CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHH------------HHH
T ss_pred cccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHH------------HHc
Confidence 2345689999999999999999999999999999999999999996432111 001111100 000
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
. ....|...+.++.+++.+||+.||++||++.
T Consensus 234 ~----~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~ 265 (345)
T 3a8x_A 234 K----QIRIPRSLSVKAASVLKSFLNKDPKERLGCH 265 (345)
T ss_dssp C----CCCCCTTSCHHHHHHHHHHTCSSTTTSTTCC
T ss_pred C----CCCCCCCCCHHHHHHHHHHhcCCHhHCCCCC
Confidence 0 1112334567799999999999999999973
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-27 Score=247.23 Aligned_cols=179 Identities=21% Similarity=0.257 Sum_probs=136.4
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch---hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR---EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|...+.||+|+||.||+|+. .+|+.||||+++.... .....+.+|+++++.++||||+++++++...+..
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv 94 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV 94 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 46788899999999999999987 5799999999975432 2356788999999999999999999987654311
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+...... .
T Consensus 95 ~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~---~ 171 (476)
T 2y94_A 95 MEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE---F 171 (476)
T ss_dssp EECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTC---C
T ss_pred EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEeccchhhccccc---c
Confidence 4999998754322 2
Q ss_pred cccccccccccCccccccCcc-CcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 516 QTQTLATIGYMAPEYGREGRV-STNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~-~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
..+.+||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+... ......... +.
T Consensus 172 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~-----~~~~~~i~~------------~~-- 232 (476)
T 2y94_A 172 LRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV-----PTLFKKICD------------GI-- 232 (476)
T ss_dssp BCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS-----HHHHHHHHT------------TC--
T ss_pred ccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH-----HHHHHHHhc------------CC--
Confidence 345689999999999998776 7899999999999999999999975321 111111100 00
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..++.++.+++.+||+.||++|||+.|+
T Consensus 233 --~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~ei 264 (476)
T 2y94_A 233 --FYTPQYLNPSVISLLKHMLQVDPMKRATIKDI 264 (476)
T ss_dssp --CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred --cCCCccCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence 11222345679999999999999999998763
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-27 Score=240.53 Aligned_cols=173 Identities=21% Similarity=0.296 Sum_probs=134.0
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch--------hHHHHHHHHHHHhhcccCCCcceeeeeccCCC
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR--------EAFKNFDIECDMMKHIRHRNLIKIISSCSNDD 496 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 496 (628)
.++|...+.||+|+||.||+|+. .+|+.||||+++.... ...+.+.+|++++++++||||+++++++.+++
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~ 102 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG 102 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence 46789999999999999999986 6799999999975421 12345778999999999999999999876543
Q ss_pred cc-------------------------------------------------------------------ccccccccccc
Q 037488 497 FK-------------------------------------------------------------------ADFGMAKPLLK 509 (628)
Q Consensus 497 ~~-------------------------------------------------------------------~DFGla~~~~~ 509 (628)
.. +|||+|+....
T Consensus 103 ~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~ 182 (335)
T 3dls_A 103 FFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLER 182 (335)
T ss_dssp EEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeecccceECCC
Confidence 21 39999986543
Q ss_pred cCcccccccccccccccCccccccCcc-CcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccc
Q 037488 510 EDQSLIQTQTLATIGYMAPEYGREGRV-STNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588 (628)
Q Consensus 510 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (628)
.. .....+||+.|+|||++.+..+ +.++||||+||++|||++|+.||...... ...
T Consensus 183 ~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-------------------~~~- 239 (335)
T 3dls_A 183 GK---LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET-------------------VEA- 239 (335)
T ss_dssp TC---CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG-------------------TTT-
T ss_pred CC---ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH-------------------Hhh-
Confidence 32 1244679999999999998887 88999999999999999999999652110 000
Q ss_pred ccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++.+++.+||+.||++|||+.|+
T Consensus 240 -------~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~el 272 (335)
T 3dls_A 240 -------AIHPPYLVSKELMSLVSGLLQPVPERRTTLEKL 272 (335)
T ss_dssp -------CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred -------ccCCCcccCHHHHHHHHHHccCChhhCcCHHHH
Confidence 011122346679999999999999999998753
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-26 Score=231.04 Aligned_cols=186 Identities=25% Similarity=0.384 Sum_probs=126.6
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.++|...+.||+|+||.||+|+.. ..||||+++.. .....+.+.+|++++++++||||+++++++..+...
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~ 100 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQW 100 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEEC
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCCccEEEEEe
Confidence 567899999999999999999864 35999999653 344567799999999999999999999977543311
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++............
T Consensus 101 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~ 180 (289)
T 3og7_A 101 CEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFE 180 (289)
T ss_dssp CCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC---------------
T ss_pred cCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccceecccccccccccccc
Confidence 3999998654322222234
Q ss_pred cccccccccCccccc---cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 518 QTLATIGYMAPEYGR---EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~---~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
...||+.|+|||++. +..++.++||||+||++|||++|+.||....... .......... ..+
T Consensus 181 ~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~-~~~~~~~~~~-------~~~------- 245 (289)
T 3og7_A 181 QLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIEMVGRGS-------LSP------- 245 (289)
T ss_dssp ---CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHH-HHHHHHHHTS-------CCC-------
T ss_pred ccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHH-HHHHHhcccc-------cCc-------
Confidence 457999999999986 5678999999999999999999999997643221 1111111100 000
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.|+
T Consensus 246 ~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~el 279 (289)
T 3og7_A 246 DLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRI 279 (289)
T ss_dssp CTTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred chhhccccCCHHHHHHHHHHccCChhhCCCHHHH
Confidence 0011223456779999999999999999998763
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.9e-27 Score=234.19 Aligned_cols=200 Identities=22% Similarity=0.231 Sum_probs=135.2
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch-----hHHHHHHHHHHHhhccc---CCCcceeeeeccCC
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR-----EAFKNFDIECDMMKHIR---HRNLIKIISSCSND 495 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~ 495 (628)
..++|...+.||+|+||.||+|+. .+|+.||||++..... .....+.+|++++++++ ||||++++++|...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 467899999999999999999997 6799999999974321 12345677888877775 99999999987542
Q ss_pred Cc-----c-------------------------------------------------------------------ccccc
Q 037488 496 DF-----K-------------------------------------------------------------------ADFGM 503 (628)
Q Consensus 496 ~~-----~-------------------------------------------------------------------~DFGl 503 (628)
.. . +|||+
T Consensus 87 ~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~ 166 (308)
T 3g33_A 87 RTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGL 166 (308)
T ss_dssp CSSSEEEEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSCEEECSCSC
T ss_pred CCCCceeEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEEeeCcc
Confidence 21 0 39999
Q ss_pred cccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC---c
Q 037488 504 AKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI---S 580 (628)
Q Consensus 504 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~---~ 580 (628)
|+...... .....+||+.|+|||++.+..|+.++||||+||++|||++|++||....... ............ .
T Consensus 167 a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~ 242 (308)
T 3g33_A 167 ARIYSYQM---ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEAD-QLGKIFDLIGLPPEDD 242 (308)
T ss_dssp TTTSTTCC---CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHH-HHHHHHHHHCCCCTTT
T ss_pred ccccCCCc---ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCChhh
Confidence 98654322 2245679999999999999999999999999999999999999997532211 112222111100 0
Q ss_pred cceee---cccccCC-cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 581 VMKVV---DAHLLSQ-EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 581 ~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.... ....... ..........++.++.+++.+||+.||++|||+.|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~ 294 (308)
T 3g33_A 243 WPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRA 294 (308)
T ss_dssp SCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred ccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHH
Confidence 00000 0000000 000011223456789999999999999999998763
|
| >1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-27 Score=240.23 Aligned_cols=197 Identities=24% Similarity=0.230 Sum_probs=132.2
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
.+.|...+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+++++.++||||+++++++..+..
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 46789999999999999999987 67999999999543 33446778999999999999999999998765321
Q ss_pred --c---------------------------------------------------------------ccccccccccccCc
Q 037488 498 --K---------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 498 --~---------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
. +|||+|+.....
T Consensus 104 ~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~-- 181 (367)
T 1cm8_A 104 DFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSE-- 181 (367)
T ss_dssp CCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSS--
T ss_pred eEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeeecccccccc--
Confidence 0 499999865322
Q ss_pred ccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC--ccceeec---
Q 037488 513 SLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI--SVMKVVD--- 586 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--- 586 (628)
....+||++|+|||++.+ ..|+.++||||+||++|||++|++||.+..... .+.......... .....+.
T Consensus 182 ---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~l~~i~~~~g~~~~~~~~~~~~~~ 257 (367)
T 1cm8_A 182 ---MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLD-QLKEIMKVTGTPPAEFVQRLQSDE 257 (367)
T ss_dssp ---CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCHHHHHTCSCHH
T ss_pred ---cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcCCCCHHHHHHhhhHH
Confidence 245689999999999887 679999999999999999999999997532111 111111111000 0000000
Q ss_pred -----ccccCC-cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 587 -----AHLLSQ-EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 587 -----~~~~~~-~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+... ...........++++.+|+.+||+.||++|||+.|+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~ 305 (367)
T 1cm8_A 258 AKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEA 305 (367)
T ss_dssp HHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred HHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHH
Confidence 000000 000011223456789999999999999999998753
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-27 Score=250.79 Aligned_cols=182 Identities=17% Similarity=0.188 Sum_probs=133.0
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
.+.|...+.||+|+||.||+|+. .+++.||||++.... ......+.+|+++++.++|||||+++++|..+...
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 115 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM 115 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 35688899999999999999987 578999999997542 23356788999999999999999999987654321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+......
T Consensus 116 e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~-- 193 (494)
T 3lij_A 116 ECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQK-- 193 (494)
T ss_dssp ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTB--
T ss_pred ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCc--
Confidence 3999998754332
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
.....+||++|+|||++. +.|+.++||||+||++|||++|++||...... ...... .....
T Consensus 194 -~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-----~~~~~i------------~~~~~ 254 (494)
T 3lij_A 194 -KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQ-----EILRKV------------EKGKY 254 (494)
T ss_dssp -CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-----HHHHHH------------HHTCC
T ss_pred -cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHH-----HHHHHH------------HhCCC
Confidence 224567999999999986 56999999999999999999999999753221 111110 01111
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+.+..++.++++++.+||+.||++|||+.|+
T Consensus 255 ~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~ 289 (494)
T 3lij_A 255 TFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQA 289 (494)
T ss_dssp CCCSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred CCCchhcccCCHHHHHHHHHHCCCChhhCccHHHH
Confidence 11122233567789999999999999999998763
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-27 Score=237.04 Aligned_cols=185 Identities=19% Similarity=0.269 Sum_probs=129.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF---- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 497 (628)
.++|...+.||+|+||.||+|+. .+++.||||+++.. .......+.+|++++++++|||||++++++.....
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 46789999999999999999997 67999999999754 23345678999999999999999999987643210
Q ss_pred --c----------------------------------------------------------------ccccccccccccC
Q 037488 498 --K----------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 498 --~----------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
. +|||+|+......
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~ 170 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSG 170 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEECCCSCC-------
T ss_pred cEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEEeeccCcccccccc
Confidence 0 3999998654332
Q ss_pred cc-cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 512 QS-LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 512 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
.. ......+||+.|+|||++.+..++.++||||+||++|||++|+.||....... ..... ..
T Consensus 171 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~-----~~~~~------------~~ 233 (311)
T 3ork_A 171 NSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVS-----VAYQH------------VR 233 (311)
T ss_dssp -----------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH-----HHHHH------------HH
T ss_pred cccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH-----HHHHH------------hc
Confidence 11 12234569999999999999999999999999999999999999996532211 11000 00
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
.........+..++.++.+++.+||+.||++||++.+
T Consensus 234 ~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~ 270 (311)
T 3ork_A 234 EDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAA 270 (311)
T ss_dssp CCCCCHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHH
T ss_pred CCCCCcccccCCCCHHHHHHHHHHHhcCHhhChhhHH
Confidence 0000111122345677999999999999999998654
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-27 Score=246.88 Aligned_cols=190 Identities=21% Similarity=0.213 Sum_probs=139.3
Q ss_pred HHHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCC
Q 037488 421 ELFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDD 496 (628)
Q Consensus 421 ~l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 496 (628)
+.....++|...+.||+|+||.||+|+. .+++.||+|+++... ....+.+.+|+.+++.++|||||+++++|.+++
T Consensus 63 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~ 142 (410)
T 3v8s_A 63 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR 142 (410)
T ss_dssp HHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred hcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECC
Confidence 3445678999999999999999999987 568999999997532 122345789999999999999999999886644
Q ss_pred cc-----------------------------------------------------------------ccccccccccccC
Q 037488 497 FK-----------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 497 ~~-----------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
.. +|||+|+......
T Consensus 143 ~~~lV~E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~ 222 (410)
T 3v8s_A 143 YLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEG 222 (410)
T ss_dssp EEEEEECCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTS
T ss_pred EEEEEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeEeeccCC
Confidence 21 4999998754332
Q ss_pred cccccccccccccccCccccccCc----cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecc
Q 037488 512 QSLIQTQTLATIGYMAPEYGREGR----VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (628)
.....+.+||+.|||||++.+.. |+.++||||+||++|||++|++||...... .....+...
T Consensus 223 -~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~-~~~~~i~~~------------ 288 (410)
T 3v8s_A 223 -MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV-GTYSKIMNH------------ 288 (410)
T ss_dssp -EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHTH------------
T ss_pred -cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChh-hHHHHHHhc------------
Confidence 12234678999999999998655 899999999999999999999999653211 111111100
Q ss_pred cccCCcccchhchhhhHHHHHHHhhcccCCCccc--CCCCCCC
Q 037488 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEE--RVNAKEI 628 (628)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~--Rpt~~ev 628 (628)
.....++.+..++.++++|+.+||+.+|++ ||++.||
T Consensus 289 ----~~~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei 327 (410)
T 3v8s_A 289 ----KNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEI 327 (410)
T ss_dssp ----HHHCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHH
T ss_pred ----cccccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHH
Confidence 000011112235677999999999999988 9998653
|
| >1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-27 Score=234.89 Aligned_cols=173 Identities=20% Similarity=0.226 Sum_probs=133.1
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|...+.||+|+||.||+|+. .+|+.||+|+++... ....+.+.+|+.+++.++|||||++++++.+++..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 46788999999999999999987 579999999997542 23356678999999999999999999987654321
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+.....
T Consensus 85 ~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~----- 159 (318)
T 1fot_A 85 MDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV----- 159 (318)
T ss_dssp ECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC-----
T ss_pred EeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCcceecCCc-----
Confidence 499999865322
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
..+.+||+.|+|||++.+..|+.++||||+||++|||++|+.||..... ....... ....
T Consensus 160 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-----~~~~~~i------------~~~~--- 219 (318)
T 1fot_A 160 TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT-----MKTYEKI------------LNAE--- 219 (318)
T ss_dssp BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHH------------HHCC---
T ss_pred cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH-----HHHHHHH------------HhCC---
Confidence 2456899999999999999999999999999999999999999965321 1111110 0000
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
...+...+.++.+++.+||+.||++||+
T Consensus 220 -~~~p~~~~~~~~~li~~lL~~dp~~R~~ 247 (318)
T 1fot_A 220 -LRFPPFFNEDVKDLLSRLITRDLSQRLG 247 (318)
T ss_dssp -CCCCTTSCHHHHHHHHHHTCSCTTTCTT
T ss_pred -CCCCCCCCHHHHHHHHHHhccCHHHcCC
Confidence 1122334667999999999999999993
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-26 Score=237.51 Aligned_cols=198 Identities=19% Similarity=0.140 Sum_probs=129.8
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
.++|...+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|+.+++.++||||+++++++...+.
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 47899999999999999999987 57999999999753 23445678899999999999999999998765431
Q ss_pred -c---------------------------------------------------------------ccccccccccccCcc
Q 037488 498 -K---------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 498 -~---------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
. +|||+|+......
T Consensus 104 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~-- 181 (371)
T 2xrw_A 104 DVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF-- 181 (371)
T ss_dssp EEEEEEECCSEEHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC----------
T ss_pred ceEEEEEcCCCCHHHHHhhccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEeeccccccccc--
Confidence 0 3999998653321
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcccee---ec----
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKV---VD---- 586 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---- 586 (628)
.....+||+.|+|||++.+..|+.++||||+||++|||++|+.||.+..... ....... .......+. +.
T Consensus 182 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~-~~~~~~~~~~~~~~~~~~ 258 (371)
T 2xrw_A 182 -MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHID-QWNKVIE-QLGTPCPEFMKKLQPTVR 258 (371)
T ss_dssp ---------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHC--CCCCCHHHHTTSCHHHH
T ss_pred -ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHH-HhCCCCHHHHHHhhhHHH
Confidence 2245679999999999999999999999999999999999999997532110 0111110 000000000 00
Q ss_pred ------cc--------ccC--CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 587 ------AH--------LLS--QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 587 ------~~--------~~~--~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+. ... ..+.....+...+.++++|+.+||+.||++|||++|+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~ 316 (371)
T 2xrw_A 259 TYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEA 316 (371)
T ss_dssp HHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred HHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHH
Confidence 00 000 0000111122347789999999999999999998763
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-27 Score=237.91 Aligned_cols=198 Identities=18% Similarity=0.164 Sum_probs=130.3
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchh-HHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYRE-AFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
++|...+.||+|+||.||+|+. .+++.||||++...... ....+.+|++++++++||||+++++++..++..
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 5788999999999999999997 57999999999754322 222456899999999999999999988654321
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+|+...... .....
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~--~~~~~ 159 (324)
T 3mtl_A 82 LDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPT--KTYDN 159 (324)
T ss_dssp CSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEECC-----------
T ss_pred cccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCcccccccCCc--ccccc
Confidence 3999998653322 12244
Q ss_pred ccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC----ccceeecccc----
Q 037488 519 TLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI----SVMKVVDAHL---- 589 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---- 589 (628)
.+||++|+|||++.+ ..|+.++||||+||++|||++|+.||.+.... .....+...... .+........
T Consensus 160 ~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 237 (324)
T 3mtl_A 160 EVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVE--EQLHFIFRILGTPTEETWPGILSNEEFKTY 237 (324)
T ss_dssp ---CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHHHHCCCCTTTSTTGGGCHHHHHT
T ss_pred ccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHHhCCCChHhchhhhcchhhccc
Confidence 579999999999876 56899999999999999999999999763221 111111111111 1111100000
Q ss_pred --c-CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 --L-SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 --~-~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .............+.++.+|+.+||+.||++|||+.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~ 279 (324)
T 3mtl_A 238 NYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDA 279 (324)
T ss_dssp CCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred ccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHH
Confidence 0 00001112223456789999999999999999998764
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=215.94 Aligned_cols=207 Identities=24% Similarity=0.208 Sum_probs=184.2
Q ss_pred cccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCC
Q 037488 154 EISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNL 233 (628)
Q Consensus 154 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 233 (628)
.++++++++.+++++|.++ .+|..+. ++++.|+|++|++.+..+..|..+++|++|++++|.+++..+. ..+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 4677889999999999998 4565553 6899999999999988888999999999999999999876543 788999
Q ss_pred cEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCc
Q 037488 234 RSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNR 313 (628)
Q Consensus 234 ~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 313 (628)
++|++++|+++.+|..+..+++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 99999999999999988899999999999999998888899999999999999999998888888999999999999999
Q ss_pred CcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecC
Q 037488 314 LQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEI 366 (628)
Q Consensus 314 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~ 366 (628)
+++..+..|..+++|+.|++++|+++. +|..+....+|+.+++++|++.+..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccCcC
Confidence 997777778899999999999999985 5666677889999999999987654
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=212.37 Aligned_cols=205 Identities=25% Similarity=0.305 Sum_probs=177.4
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEcc
Q 037488 160 NLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLG 239 (628)
Q Consensus 160 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 239 (628)
+.+.++++++.++ .+|..+. ++|++|+|++|++.+..+..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 5678888888887 4565443 578899999999987777788899999999999999987777778889999999999
Q ss_pred CCcCCcCCCC-ccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccC
Q 037488 240 SNQITSIPST-LLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSI 318 (628)
Q Consensus 240 ~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 318 (628)
+|+++.+|.. +..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 9999988754 467889999999999999888888899999999999999999877777889999999999999999877
Q ss_pred ChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCC
Q 037488 319 PDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIP 367 (628)
Q Consensus 319 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p 367 (628)
+..|..+++|+.|++++|.++++.+..+..+++|+.|++++|++.+...
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 7789999999999999999998888788899999999999999887654
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-26 Score=238.70 Aligned_cols=198 Identities=21% Similarity=0.196 Sum_probs=124.5
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF---- 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 497 (628)
..++|...+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+++++.++||||+++++++.....
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 106 (367)
T 2fst_X 27 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF 106 (367)
T ss_dssp EETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred CCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence 357899999999999999999986 67999999999653 33456778899999999999999999998754210
Q ss_pred ---c---------------------------------------------------------------ccccccccccccC
Q 037488 498 ---K---------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 498 ---~---------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
. +|||+|+.....
T Consensus 107 ~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~- 185 (367)
T 2fst_X 107 NDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADE- 185 (367)
T ss_dssp CCCEEEEECCCEECC-----CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC-----------
T ss_pred CeEEEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeecccccccccc-
Confidence 0 499999864322
Q ss_pred cccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC--c-cceeecc
Q 037488 512 QSLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI--S-VMKVVDA 587 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~ 587 (628)
....+||++|+|||++.+ ..|+.++||||+||++|||++|++||.+.... ..+.......... . ...+...
T Consensus 186 ----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~l~~i~~~~g~p~~~~~~~~~~~ 260 (367)
T 2fst_X 186 ----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHI-DQLKLILRLVGTPGAELLKKISSE 260 (367)
T ss_dssp ---------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCSCCHHHHTTCCCH
T ss_pred ----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCCHHHHHHhhhH
Confidence 245689999999999887 67999999999999999999999999753211 1111111111000 0 0000000
Q ss_pred -------cccCCcc-cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 -------HLLSQED-KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 -------~~~~~~~-~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+..... .........++++.+|+.+||+.||++|||+.|+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~ 309 (367)
T 2fst_X 261 SARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQA 309 (367)
T ss_dssp HHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred HHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHH
Confidence 0000000 0011122346779999999999999999998653
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-26 Score=249.21 Aligned_cols=183 Identities=18% Similarity=0.186 Sum_probs=135.5
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch-------------hHHHHHHHHHHHhhcccCCCcceeee
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR-------------EAFKNFDIECDMMKHIRHRNLIKIIS 490 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-------------~~~~~~~~E~~~l~~l~h~niv~l~~ 490 (628)
..+.|...+.||+|+||.||+|+. .+++.||||++..... ...+.+.+|++++++++|||||++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 357899999999999999999987 5689999999975321 23467889999999999999999999
Q ss_pred eccCCCcc---------------------------------------------------------------------ccc
Q 037488 491 SCSNDDFK---------------------------------------------------------------------ADF 501 (628)
Q Consensus 491 ~~~~~~~~---------------------------------------------------------------------~DF 501 (628)
+|.++... +||
T Consensus 114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Df 193 (504)
T 3q5i_A 114 VFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDF 193 (504)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSEEECCC
T ss_pred EEEcCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccEEEEEC
Confidence 87654321 399
Q ss_pred cccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcc
Q 037488 502 GMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISV 581 (628)
Q Consensus 502 Gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 581 (628)
|+|+...... .....+||++|+|||++. +.|+.++||||+||++|||++|++||.+... ......
T Consensus 194 g~a~~~~~~~---~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~~~~------ 258 (504)
T 3q5i_A 194 GLSSFFSKDY---KLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQND-----QDIIKK------ 258 (504)
T ss_dssp TTCEECCTTS---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHH------
T ss_pred CCCEEcCCCC---ccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHH------
Confidence 9998664332 224567999999999987 4699999999999999999999999975321 111111
Q ss_pred ceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 582 MKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
............+..++.++++++.+||+.||++|||+.|+
T Consensus 259 ------i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~ 299 (504)
T 3q5i_A 259 ------VEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEA 299 (504)
T ss_dssp ------HHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred ------HHcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHH
Confidence 11111111222334567789999999999999999998763
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-26 Score=228.74 Aligned_cols=180 Identities=20% Similarity=0.362 Sum_probs=115.7
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch---hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR---EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|...+.||+|+||.||+|+. .+|+.||||++..... ...+.+.+|++++++++||||+++++++.+++..
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 46789999999999999999987 6799999999975422 2246789999999999999999999987654321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+++.......
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~-- 167 (278)
T 3cok_A 90 LEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHE-- 167 (278)
T ss_dssp EECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCEECC------
T ss_pred EecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCC--
Confidence 39999986543221
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
......||+.|+|||++.+..++.++||||+||++|||++|+.||....... ........
T Consensus 168 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-----------------~~~~~~~~--- 227 (278)
T 3cok_A 168 KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKN-----------------TLNKVVLA--- 227 (278)
T ss_dssp ------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC----------------------CCSS---
T ss_pred cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHH-----------------HHHHHhhc---
Confidence 1234579999999999999899999999999999999999999997532211 00000000
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+...+.++.+++.+||+.||++|||+.|+
T Consensus 228 -~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~ 260 (278)
T 3cok_A 228 -DYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSV 260 (278)
T ss_dssp -CCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred -ccCCccccCHHHHHHHHHHcccCHhhCCCHHHH
Confidence 111233456679999999999999999998763
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-26 Score=240.49 Aligned_cols=203 Identities=16% Similarity=0.234 Sum_probs=135.7
Q ss_pred hhcCCCcccccccC--CccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 425 ATNGFSENNLIDRG--GIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G--~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
..++|+..+.||+| +||.||+|+. .+|+.||||+++... ....+.+.+|+++++.++|||||++++++..++..
T Consensus 23 ~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 102 (389)
T 3gni_B 23 EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW 102 (389)
T ss_dssp CGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred CCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE
Confidence 35678899999999 9999999997 579999999997543 34456788999999999999999999987543211
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||.+.......
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~ 182 (389)
T 3gni_B 103 VVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHG 182 (389)
T ss_dssp EEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGCEECEETT
T ss_pred EEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccceeecccc
Confidence 3999887543221
Q ss_pred cc-----cccccccccccccCcccccc--CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcc---
Q 037488 512 QS-----LIQTQTLATIGYMAPEYGRE--GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISV--- 581 (628)
Q Consensus 512 ~~-----~~~~~~~gt~~y~aPE~~~~--~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~--- 581 (628)
.. ......+||+.|+|||++.+ ..|+.++||||+||++|||++|+.||.+........ .......+...
T Consensus 183 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~-~~~~~~~~~~~~~~ 261 (389)
T 3gni_B 183 QRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLL-EKLNGTVPCLLDTS 261 (389)
T ss_dssp EECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHH-HC------------
T ss_pred ccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHH-HHhcCCCCcccccc
Confidence 11 11223479999999999987 579999999999999999999999997643322111 11110000000
Q ss_pred --------------------ceee---cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 582 --------------------MKVV---DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 582 --------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.... .+............+..++.++.+|+.+||+.||++|||+.|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~el 331 (389)
T 3gni_B 262 TIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTL 331 (389)
T ss_dssp --------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHH
T ss_pred ccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHH
Confidence 0000 0000000000112334456789999999999999999998763
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=237.12 Aligned_cols=189 Identities=17% Similarity=0.219 Sum_probs=135.6
Q ss_pred HHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-----hhHHHHHHHHHHHhhcccCCCcceeeeeccCCC
Q 037488 423 FQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-----REAFKNFDIECDMMKHIRHRNLIKIISSCSNDD 496 (628)
Q Consensus 423 ~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 496 (628)
....++|...+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|++++++++|||||+++++|.+++
T Consensus 22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~ 101 (345)
T 3hko_A 22 LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQ 101 (345)
T ss_dssp HHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred hhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCC
Confidence 45567899999999999999999987 678999999997532 344577899999999999999999998764321
Q ss_pred c-------------------------------------------------------------------------------
Q 037488 497 F------------------------------------------------------------------------------- 497 (628)
Q Consensus 497 ~------------------------------------------------------------------------------- 497 (628)
.
T Consensus 102 ~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l 181 (345)
T 3hko_A 102 YICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSAL 181 (345)
T ss_dssp EEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred -----------------------------cccccccccccccCc--ccccccccccccccCcccccc--CccCcccchhh
Q 037488 498 -----------------------------KADFGMAKPLLKEDQ--SLIQTQTLATIGYMAPEYGRE--GRVSTNGDVYS 544 (628)
Q Consensus 498 -----------------------------~~DFGla~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DVwS 544 (628)
.+|||+|+.+..... ........||+.|+|||++.+ ..|+.++||||
T Consensus 182 ~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~Diws 261 (345)
T 3hko_A 182 HYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWS 261 (345)
T ss_dssp HHHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHH
T ss_pred HHHHHCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHH
Confidence 039999986533221 112245579999999999875 67899999999
Q ss_pred HhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCC
Q 037488 545 FGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 545 ~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
+||++|||++|+.||......+ ....... ............++.++.+++.+||+.||++|||
T Consensus 262 lG~il~el~~g~~pf~~~~~~~-~~~~~~~----------------~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps 324 (345)
T 3hko_A 262 AGVLLHLLLMGAVPFPGVNDAD-TISQVLN----------------KKLCFENPNYNVLSPLARDLLSNLLNRNVDERFD 324 (345)
T ss_dssp HHHHHHHHHHSSCSSCCSSHHH-HHHHHHH----------------CCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCC
T ss_pred HHHHHHHHHHCCCCCCCCChHH-HHHHHHh----------------cccccCCcccccCCHHHHHHHHHHcCCChhHCCC
Confidence 9999999999999996532211 1111111 0001111122235677999999999999999999
Q ss_pred CCCC
Q 037488 625 AKEI 628 (628)
Q Consensus 625 ~~ev 628 (628)
+.|+
T Consensus 325 ~~~~ 328 (345)
T 3hko_A 325 AMRA 328 (345)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9.7e-27 Score=233.45 Aligned_cols=183 Identities=17% Similarity=0.197 Sum_probs=133.9
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
..++|...+.||+|+||.||+|+. .+|+.||||+++.......+.+.+|++++++++||||+++++++.++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 86 (304)
T 2jam_A 7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQ 86 (304)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEE
Confidence 346788899999999999999987 57999999999865444456788999999999999999999987654311
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+++.....
T Consensus 87 ~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~---- 162 (304)
T 2jam_A 87 LVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG---- 162 (304)
T ss_dssp CCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCB----
T ss_pred cCCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCC----
Confidence 388888753221
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
......||+.|+|||++.+..++.++||||+||++|||++|+.||...... ........ ....
T Consensus 163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~i~~---------------~~~~ 225 (304)
T 2jam_A 163 IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETES--KLFEKIKE---------------GYYE 225 (304)
T ss_dssp TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHH---------------CCCC
T ss_pred ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHc---------------CCCC
Confidence 123346999999999999999999999999999999999999999653211 11111100 0011
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.|+
T Consensus 226 ~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~ 259 (304)
T 2jam_A 226 FESPFWDDISESAKDFICHLLEKDPNERYTCEKA 259 (304)
T ss_dssp CCTTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHH
T ss_pred CCccccccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 1112233456779999999999999999998653
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-25 Score=216.54 Aligned_cols=205 Identities=21% Similarity=0.195 Sum_probs=169.1
Q ss_pred ccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEcc
Q 037488 136 SMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLG 215 (628)
Q Consensus 136 ~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 215 (628)
.++.|++++|.+++..+..|.++++|+.|++++|.+.+..+..+..+++|++|++++|++.+..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444455544455567778889999999998887777788889999999999999988877888889999999999
Q ss_pred CCcCcccCCCCccCCCCCcEEEccCCcCCc--CCCCccCCCCCcEEEcCCCCCcCCCCCcccCCcccc----EEEcCCCc
Q 037488 216 SNKLSGFVPASFGNLTNLRSLHLGSNQITS--IPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLI----KIDLSMNN 289 (628)
Q Consensus 216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~Ls~N~ 289 (628)
+|.+.+..+..+..+++|++|++++|.++. +|..+..+++|++|++++|.+++..+..+..+.+|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 999988777788899999999999999987 678888899999999999999887777787777777 89999999
Q ss_pred CCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCccccc
Q 037488 290 FSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGI 341 (628)
Q Consensus 290 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 341 (628)
+++..+..+.. .+|++|++++|++++..+..+..+++|+.|++++|.+...
T Consensus 189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 98766665554 4899999999999977777788999999999999999854
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-26 Score=245.54 Aligned_cols=176 Identities=24% Similarity=0.362 Sum_probs=134.9
Q ss_pred hhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-c-----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF-K----- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-~----- 498 (628)
..++|...+.||+|+||.||+|... |+.||||+++... ..+.|.+|++++++++|||||+++++|...+. .
T Consensus 191 ~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e 267 (450)
T 1k9a_A 191 NMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE 267 (450)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEE
T ss_pred ChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEE
Confidence 3567888899999999999999876 7899999997543 45678999999999999999999998754321 0
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+.....
T Consensus 268 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~----- 342 (450)
T 1k9a_A 268 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST----- 342 (450)
T ss_dssp CCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCEECC-------
T ss_pred ecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCccccccc-----
Confidence 399999854322
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
.....+|+.|+|||++.+..++.++|||||||++|||+| |+.||......+ ....+.. .
T Consensus 343 ~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~------------------~ 402 (450)
T 1k9a_A 343 QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--VVPRVEK------------------G 402 (450)
T ss_dssp ----CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTT--HHHHHHT------------------T
T ss_pred ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHc------------------C
Confidence 123468899999999999999999999999999999999 999997643221 1111110 0
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+...+..++.++.++|.+||+.||++|||+.|+
T Consensus 403 ~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l 436 (450)
T 1k9a_A 403 YKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQL 436 (450)
T ss_dssp CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 1122344677889999999999999999998763
|
| >4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-26 Score=228.88 Aligned_cols=181 Identities=23% Similarity=0.328 Sum_probs=136.1
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
.++|...+.||+|+||.||+|+..+++.||+|++..... ..+.+.+|++++++++||||+++++++.++...
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 87 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 87 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeC
Confidence 467888899999999999999987788999999975432 235689999999999999999999988654321
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+|+...... ......
T Consensus 88 ~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~ 166 (269)
T 4hcu_A 88 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YTSSTG 166 (269)
T ss_dssp TTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH-HHSTTS
T ss_pred CCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEeccccccccccccc-cccccC
Confidence 3999998653322 112234
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccch
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHF 597 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (628)
..||+.|+|||++.+..++.++||||+||++|||++ |+.||..... ......... . ...
T Consensus 167 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~-----~~~~~~~~~------------~---~~~ 226 (269)
T 4hcu_A 167 TKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN-----SEVVEDIST------------G---FRL 226 (269)
T ss_dssp TTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHHHT------------T---CCC
T ss_pred cccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCH-----HHHHHHHhc------------C---ccC
Confidence 568889999999999999999999999999999999 9999975321 111111100 0 011
Q ss_pred hchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 598 VIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 598 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+..++.++.+++.+||+.||++|||+.|+
T Consensus 227 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l 257 (269)
T 4hcu_A 227 YKPRLASTHVYQIMNHCWRERPEDRPAFSRL 257 (269)
T ss_dssp CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCcCCHHHHHHHHHHccCCcccCcCHHHH
Confidence 1222345679999999999999999998763
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-26 Score=231.81 Aligned_cols=177 Identities=26% Similarity=0.395 Sum_probs=126.9
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
.++|...+.||+|+||.||+|+.. ++.||||++... ...+.|.+|++++++++||||+++++++.+....
T Consensus 7 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~lv~e~~~~ 83 (307)
T 2eva_A 7 YKEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYAEG 83 (307)
T ss_dssp GGGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTTTTEEEEECCTT
T ss_pred HhHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCcEEEEEcCCC
Confidence 356888899999999999999876 788999998643 3456789999999999999999999876532100
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+|+.....
T Consensus 84 ~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~---- 159 (307)
T 2eva_A 84 GSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH---- 159 (307)
T ss_dssp CBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC-----------
T ss_pred CCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc----
Confidence 388877654221
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
.....||+.|+|||++.+..++.++|||||||++|||++|+.||........ ........ .
T Consensus 160 -~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~---~~~~~~~~------------~--- 220 (307)
T 2eva_A 160 -MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAF---RIMWAVHN------------G--- 220 (307)
T ss_dssp ------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHH---HHHHHHHT------------T---
T ss_pred -cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHH---HHHHHHhc------------C---
Confidence 1234699999999999999999999999999999999999999975322111 11110000 0
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.|+
T Consensus 221 ~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el 254 (307)
T 2eva_A 221 TRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEI 254 (307)
T ss_dssp CCCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCcccccCHHHHHHHHHHhcCChhhCcCHHHH
Confidence 0111223456679999999999999999998763
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-27 Score=241.25 Aligned_cols=183 Identities=20% Similarity=0.366 Sum_probs=124.7
Q ss_pred hcCCCcccccccCCccEEEEEEec----CCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH----YGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
..+|...+.||+|+||.||+|+.. .+..||||+++.. .....+.|.+|++++++++|||||+++++|..++..
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 357888999999999999999864 5778999999764 344567799999999999999999999988654321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+........
T Consensus 124 v~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~ 203 (373)
T 2qol_A 124 VTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEA 203 (373)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC------------
T ss_pred EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCccccccccCCcc
Confidence 399999876433211
Q ss_pred -cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 514 -LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 514 -~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
.......+|+.|+|||++.+..++.++|||||||++|||++ |+.||..... ....... ...
T Consensus 204 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~-----~~~~~~i---------~~~--- 266 (373)
T 2qol_A 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSN-----QDVIKAV---------DEG--- 266 (373)
T ss_dssp ----------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCH-----HHHHHHH---------HTT---
T ss_pred ceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHH---------HcC---
Confidence 11122346789999999999999999999999999999998 9999965321 1111110 000
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++||++.||
T Consensus 267 ---~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i 300 (373)
T 2qol_A 267 ---YRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQI 300 (373)
T ss_dssp ---EECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ---CCCCCCccccHHHHHHHHHHhCcChhhCcCHHHH
Confidence 0111233456779999999999999999998763
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=8.9e-27 Score=244.07 Aligned_cols=193 Identities=20% Similarity=0.233 Sum_probs=132.6
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCC----C--c-
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSND----D--F- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~----~--~- 497 (628)
...|...+.||+|+||.||+|+. .+|+.||||++..... .+.+|++++++++|||||+++++|... + .
T Consensus 53 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~ 128 (420)
T 1j1b_A 53 EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL 128 (420)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEE
T ss_pred cceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeE
Confidence 34688889999999999999998 5699999999865322 234799999999999999998876321 0 0
Q ss_pred ---------------------------------------------------------------------ccccccccccc
Q 037488 498 ---------------------------------------------------------------------KADFGMAKPLL 508 (628)
Q Consensus 498 ---------------------------------------------------------------------~~DFGla~~~~ 508 (628)
.+|||+|+...
T Consensus 129 ~lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~ 208 (420)
T 1j1b_A 129 NLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLV 208 (420)
T ss_dssp EEEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTCEECC
T ss_pred EeehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEeccchhhhhcc
Confidence 04999998754
Q ss_pred ccCcccccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC--------
Q 037488 509 KEDQSLIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI-------- 579 (628)
Q Consensus 509 ~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~-------- 579 (628)
... .....+||++|+|||++.+. .|+.++||||+||++|||++|++||.+... ...+..++...-..
T Consensus 209 ~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~-~~~l~~i~~~lg~p~~~~~~~~ 284 (420)
T 1j1b_A 209 RGE---PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSG-VDQLVEIIKVLGTPTREQIREM 284 (420)
T ss_dssp TTC---CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCSCCHHHHHHH
T ss_pred cCC---CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHHHhh
Confidence 332 12456899999999998765 799999999999999999999999975321 11122222211100
Q ss_pred --ccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 580 --SVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 580 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
.......+... ........+...+.++++|+.+||+.||++|||+.|
T Consensus 285 ~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e 333 (420)
T 1j1b_A 285 NPNYTEFKFPQIK-AHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLE 333 (420)
T ss_dssp CSCCCCCCCCCCC-CCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred ChhhhhhccCccC-CCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHH
Confidence 00000000000 000001122345678999999999999999999865
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-26 Score=233.47 Aligned_cols=200 Identities=24% Similarity=0.281 Sum_probs=134.9
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
..++|...+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|++++++++||||++++++|..++..
T Consensus 23 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 102 (331)
T 4aaa_A 23 SMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLV 102 (331)
T ss_dssp CGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEE
Confidence 346788899999999999999987 569999999986532 33456688999999999999999999988654321
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++....... .
T Consensus 103 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~ 180 (331)
T 4aaa_A 103 FEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE--V 180 (331)
T ss_dssp EECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC-----------
T ss_pred EecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCcc--c
Confidence 39999986543321 2
Q ss_pred cccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC------------ccc
Q 037488 516 QTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI------------SVM 582 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~------------~~~ 582 (628)
.....||++|+|||++.+. .++.++||||+||++|||++|+.||....... ............ ...
T Consensus 181 ~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (331)
T 4aaa_A 181 YDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDID-QLYHIMMCLGNLIPRHQELFNKNPVFA 259 (331)
T ss_dssp ---CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCSCCHHHHHHHHHCGGGT
T ss_pred cCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHhCCCChhhhhHhhhccccc
Confidence 2445799999999999875 68999999999999999999999997532211 111111110000 000
Q ss_pred eeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 583 KVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+.... ..........++.++.+++.+||+.||++|||+.|+
T Consensus 260 ~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~el 304 (331)
T 4aaa_A 260 GVRLPEIKE-REPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAEL 304 (331)
T ss_dssp TCCCCCCSS-CCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGG
T ss_pred cccCccccc-cchhhhcccchhHHHHHHHHHHhccCcccCCCHHHH
Confidence 000000000 001111223467789999999999999999999875
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-26 Score=232.44 Aligned_cols=176 Identities=18% Similarity=0.153 Sum_probs=127.4
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~---- 498 (628)
++|+..+.||+|+||+||+|+. .+|+.||||++... .......+.+|+..+.++ +|||||+++++|.++...
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 5789999999999999999998 47999999998643 233344556677666665 899999999988654311
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+...... ..
T Consensus 137 e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~---~~ 213 (311)
T 3p1a_A 137 ELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAG---AG 213 (311)
T ss_dssp ECCCCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEECC--------
T ss_pred eccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeeecccCC---CC
Confidence 4999998654332 22
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
....||++|+|||++.+ .++.++|||||||++|||++|..|+.... ....+. . ....
T Consensus 214 ~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~----~~~~~~------------~------~~~~ 270 (311)
T 3p1a_A 214 EVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGE----GWQQLR------------Q------GYLP 270 (311)
T ss_dssp -CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHH----HHHHHT------------T------TCCC
T ss_pred cccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCcc----HHHHHh------------c------cCCC
Confidence 44579999999999876 79999999999999999999977654310 111100 0 0011
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..++.++.+++.+||+.||++|||+.|+
T Consensus 271 ~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~el 302 (311)
T 3p1a_A 271 PEFTAGLSSELRSVLVMMLEPDPKLRATAEAL 302 (311)
T ss_dssp HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred cccccCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 22334567789999999999999999998763
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-26 Score=228.66 Aligned_cols=181 Identities=23% Similarity=0.321 Sum_probs=136.4
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
.++|...+.||+|+||.||+|+..++..||||+++.... ..+.+.+|++++++++||||+++++++.++...
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI 85 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence 467888999999999999999988888999999975432 235688999999999999999999988654321
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+|+...... ......
T Consensus 86 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~-~~~~~~ 164 (268)
T 3sxs_A 86 SNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ-YVSSVG 164 (268)
T ss_dssp TTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTC-EEECCS
T ss_pred CCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccceecchhh-hhcccC
Confidence 3999998654332 122234
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccch
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHF 597 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (628)
..||+.|+|||++.+..++.++||||+||++|||+| |+.||...... ........ . ...
T Consensus 165 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~-----~~~~~~~~------------~---~~~ 224 (268)
T 3sxs_A 165 TKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNS-----EVVLKVSQ------------G---HRL 224 (268)
T ss_dssp CCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHH-----HHHHHHHT------------T---CCC
T ss_pred CCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChH-----HHHHHHHc------------C---CCC
Confidence 557889999999999899999999999999999999 99999653211 11111000 0 001
Q ss_pred hchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 598 VIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 598 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+..++.++.+++.+||+.||++|||+.|+
T Consensus 225 ~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l 255 (268)
T 3sxs_A 225 YRPHLASDTIYQIMYSCWHELPEKRPTFQQL 255 (268)
T ss_dssp CCCTTSCHHHHHHHHHTTCSSGGGSCCHHHH
T ss_pred CCCCcChHHHHHHHHHHcCCChhhCcCHHHH
Confidence 1122345679999999999999999998763
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-26 Score=229.40 Aligned_cols=182 Identities=17% Similarity=0.227 Sum_probs=133.4
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch------hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR------EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
++|...+.||+|+||.||+|+. .+|+.||||+++.... ...+.+.+|++++++++||||+++++++..++..
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 5688899999999999999987 4799999999975321 1356789999999999999999999987654321
Q ss_pred ---------------------------------------------------------------------ccccccccccc
Q 037488 499 ---------------------------------------------------------------------ADFGMAKPLLK 509 (628)
Q Consensus 499 ---------------------------------------------------------------------~DFGla~~~~~ 509 (628)
+|||+++....
T Consensus 85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~ 164 (283)
T 3bhy_A 85 LILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA 164 (283)
T ss_dssp EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC-
T ss_pred EEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEecccceeccC
Confidence 38888876533
Q ss_pred cCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccc
Q 037488 510 EDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589 (628)
Q Consensus 510 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (628)
.. ......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ........
T Consensus 165 ~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~------------ 224 (283)
T 3bhy_A 165 GN---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETK-----QETLTNIS------------ 224 (283)
T ss_dssp ----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHH------------
T ss_pred CC---cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcch-----HHHHHHhH------------
Confidence 22 12345699999999999999999999999999999999999999965321 11111000
Q ss_pred cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..........+..++.++.+++.+||+.||++|||+.|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~ 263 (283)
T 3bhy_A 225 AVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQS 263 (283)
T ss_dssp TTCCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred hcccCCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHH
Confidence 001111122233456779999999999999999998753
|
| >1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-26 Score=235.99 Aligned_cols=203 Identities=19% Similarity=0.172 Sum_probs=132.7
Q ss_pred HHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch-----hHHHHHHHHHHHhhcccCCCcceeeeeccCCC
Q 037488 423 FQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR-----EAFKNFDIECDMMKHIRHRNLIKIISSCSNDD 496 (628)
Q Consensus 423 ~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 496 (628)
....++|...+.||+|+||.||+|+. .+|+.||||++..... ...+.+.+|++++++++||||+++++++...+
T Consensus 6 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 85 (346)
T 1ua2_A 6 KSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS 85 (346)
T ss_dssp -------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred HHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCC
Confidence 34467899999999999999999997 5699999999975321 11346789999999999999999999876533
Q ss_pred cc------------------------------------------------------------------cccccccccccc
Q 037488 497 FK------------------------------------------------------------------ADFGMAKPLLKE 510 (628)
Q Consensus 497 ~~------------------------------------------------------------------~DFGla~~~~~~ 510 (628)
.. +|||+|+.....
T Consensus 86 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~ 165 (346)
T 1ua2_A 86 NISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSP 165 (346)
T ss_dssp CCEEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSC
T ss_pred ceEEEEEcCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEecccceeccCC
Confidence 11 499999875433
Q ss_pred CcccccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC---cccee--
Q 037488 511 DQSLIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI---SVMKV-- 584 (628)
Q Consensus 511 ~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~-- 584 (628)
. ......+||++|+|||++.+. .|+.++||||+||++|||++|++||.+.... ..+.......... .+...
T Consensus 166 ~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~ 242 (346)
T 1ua2_A 166 N--RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDL-DQLTRIFETLGTPTEEQWPDMCS 242 (346)
T ss_dssp C--CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCTTTSSSTTS
T ss_pred c--ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHcCCCChhhhhhhcc
Confidence 2 223456799999999998764 4899999999999999999999998653221 1122222211110 01000
Q ss_pred -ecccccCCccc--chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 585 -VDAHLLSQEDK--HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 585 -~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+.......+. .......++.++.+++.+||+.||++|||+.|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el 289 (346)
T 1ua2_A 243 LPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQA 289 (346)
T ss_dssp STTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHH
T ss_pred CcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHH
Confidence 00000000000 001123456789999999999999999998763
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-26 Score=248.15 Aligned_cols=181 Identities=25% Similarity=0.387 Sum_probs=138.5
Q ss_pred hcCCCcccccccCCccEEEEEEec-CCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH-YGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
..+|...+.||+|+||.||+|.+. +++.||||+++.... ..+.|.+|++++++++|||||+++++|..++..
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~ 297 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 297 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEc
Confidence 456788899999999999999984 589999999975432 356799999999999999999999998654321
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+...... ....
T Consensus 298 ~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~ 376 (495)
T 1opk_A 298 MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT-YTAH 376 (495)
T ss_dssp CTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC-EECC
T ss_pred cCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecccceeccCCc-eeec
Confidence 4999998754322 2222
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
....+|+.|+|||++.++.|+.++|||||||++|||+| |+.||...... .....+.. ..
T Consensus 377 ~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~--~~~~~~~~------------------~~ 436 (495)
T 1opk_A 377 AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLEK------------------DY 436 (495)
T ss_dssp TTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHHHT------------------TC
T ss_pred CCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHc------------------CC
Confidence 34457889999999999999999999999999999999 99999764221 11111111 01
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+...+..++.++.+++.+||+.||++|||+.||
T Consensus 437 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el 469 (495)
T 1opk_A 437 RMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 469 (495)
T ss_dssp CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHH
Confidence 122344567789999999999999999998763
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-26 Score=227.81 Aligned_cols=190 Identities=22% Similarity=0.314 Sum_probs=133.2
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhc--ccCCCcceeeeeccCC--------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKH--IRHRNLIKIISSCSND-------- 495 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~-------- 495 (628)
.++|...+.||+|+||.||+|+. +|+.||||++.... ...+.+|.+++.. ++||||+++++++...
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~ 82 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRD---EKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecccc---chhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence 56899999999999999999987 58999999996543 2445566666665 7999999998864211
Q ss_pred ---------Cc------------------------------------------------------------ccccccccc
Q 037488 496 ---------DF------------------------------------------------------------KADFGMAKP 506 (628)
Q Consensus 496 ---------~~------------------------------------------------------------~~DFGla~~ 506 (628)
+. .+|||+|+.
T Consensus 83 lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~ 162 (301)
T 3q4u_A 83 LITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVM 162 (301)
T ss_dssp EEECCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred EehhhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeee
Confidence 00 049999976
Q ss_pred ccccCcc--cccccccccccccCccccccC------ccCcccchhhHhHHHHHHhhC----------CCCCCcccCCCcc
Q 037488 507 LLKEDQS--LIQTQTLATIGYMAPEYGREG------RVSTNGDVYSFGIMLIETFTR----------KKPTDEIFSGEMT 568 (628)
Q Consensus 507 ~~~~~~~--~~~~~~~gt~~y~aPE~~~~~------~~~~~~DVwS~Gvvl~e~ltg----------~~p~~~~~~~~~~ 568 (628)
....... ......+||+.|+|||++.+. .++.++|||||||++|||+|| +.||....+....
T Consensus 163 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~ 242 (301)
T 3q4u_A 163 HSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPS 242 (301)
T ss_dssp EETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred cccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcc
Confidence 5433211 112334799999999999876 567899999999999999999 8888765554444
Q ss_pred HHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 569 LKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
................. ........++.++.+++.+||+.||++|||+.||
T Consensus 243 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i 293 (301)
T 3q4u_A 243 FEDMRKVVCVDQQRPNI---------PNRWFSDPTLTSLAKLMKECWYQNPSARLTALRI 293 (301)
T ss_dssp HHHHHHHHTTSCCCCCC---------CGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred hhhhhHHHhccCCCCCC---------ChhhccCccHHHHHHHHHHHhhcChhhCCCHHHH
Confidence 43333222111100000 0011223467889999999999999999998764
|
| >3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-26 Score=235.95 Aligned_cols=204 Identities=21% Similarity=0.184 Sum_probs=131.4
Q ss_pred HHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 422 LFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 422 l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
.....++|...+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||++++++..++..
T Consensus 29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (329)
T 3gbz_A 29 SATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRL 108 (329)
T ss_dssp ---CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEE
T ss_pred cccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEE
Confidence 345567899999999999999999986 679999999997543 22345678999999999999999999987654311
Q ss_pred ----------------------------------------------------------------------cccccccccc
Q 037488 499 ----------------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 499 ----------------------------------------------------------------------~DFGla~~~~ 508 (628)
+|||+|+...
T Consensus 109 ~lv~e~~~~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~ 188 (329)
T 3gbz_A 109 HLIFEYAENDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFG 188 (329)
T ss_dssp EEEEECCSEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC
T ss_pred EEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccC
Confidence 4999988653
Q ss_pred ccCcccccccccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhh-cCC--cccee
Q 037488 509 KEDQSLIQTQTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDL-LPI--SVMKV 584 (628)
Q Consensus 509 ~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~-~~~--~~~~~ 584 (628)
... ......+||+.|+|||++.+.. |+.++||||+||++|||++|+.||....... ......... .+. .+...
T Consensus 189 ~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 265 (329)
T 3gbz_A 189 IPI--RQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEID-QLFKIFEVLGLPDDTTWPGV 265 (329)
T ss_dssp -------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCTTTSTTG
T ss_pred Ccc--cccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHH-HHHHHHHHhCCCchhhhhhh
Confidence 221 1224457899999999998754 8999999999999999999999997532211 111111111 111 00000
Q ss_pred ec-----cccc--CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 585 VD-----AHLL--SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 585 ~~-----~~~~--~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. .... .........+..++.++.+|+.+||+.||++|||+.|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~ 316 (329)
T 3gbz_A 266 TALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNA 316 (329)
T ss_dssp GGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred hhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHH
Confidence 00 0000 00000111222356789999999999999999998763
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=236.49 Aligned_cols=173 Identities=17% Similarity=0.154 Sum_probs=134.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|...+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|+++++.++||||+++++++.+++..
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 119 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV 119 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence 46789999999999999999987 579999999997543 23456788999999999999999999887654321
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+.....
T Consensus 120 ~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~----- 194 (350)
T 1rdq_E 120 MEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR----- 194 (350)
T ss_dssp EECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC-----
T ss_pred EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEcccccceeccCC-----
Confidence 499999865332
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
..+.+||+.|+|||++.+..|+.++||||+||++|||++|++||..... ....... ....
T Consensus 195 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~~i------------~~~~--- 254 (350)
T 1rdq_E 195 TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP-----IQIYEKI------------VSGK--- 254 (350)
T ss_dssp BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHH------------HHCC---
T ss_pred cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCH-----HHHHHHH------------HcCC---
Confidence 2356899999999999999999999999999999999999999965321 1111110 0000
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
...+..++.++.+++.+||+.||++||+
T Consensus 255 -~~~p~~~~~~~~~li~~lL~~dp~~R~~ 282 (350)
T 1rdq_E 255 -VRFPSHFSSDLKDLLRNLLQVDLTKRFG 282 (350)
T ss_dssp -CCCCTTCCHHHHHHHHHHSCSCTTTCTT
T ss_pred -CCCCCCCCHHHHHHHHHHhhcCHHhccC
Confidence 1122345677999999999999999998
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-26 Score=235.44 Aligned_cols=183 Identities=23% Similarity=0.335 Sum_probs=128.4
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcE----EEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGME----VAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~----vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
.++|...+.||+|+||.||+|+. .+++. ||+|.+... .....+.+.+|+.++++++||||++++++|..+...
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 93 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQL 93 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSSEEE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCCceE
Confidence 46789999999999999999986 45554 577766432 233457789999999999999999999987654321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+........
T Consensus 94 v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~ 173 (327)
T 3lzb_A 94 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE 173 (327)
T ss_dssp EECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC----------
T ss_pred EEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCcccc
Confidence 399999876443332
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.......||+.|+|||++.+..|+.++||||+||++|||++ |+.||....... ........
T Consensus 174 ~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--~~~~~~~~---------------- 235 (327)
T 3lzb_A 174 YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE--ISSILEKG---------------- 235 (327)
T ss_dssp ------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHHHTT----------------
T ss_pred ccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHH--HHHHHHcC----------------
Confidence 23334568899999999999999999999999999999999 999997642221 11111110
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.|+
T Consensus 236 --~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el 269 (327)
T 3lzb_A 236 --ERLPQPPICTIDVYMIMRKCWMIDADSRPKFREL 269 (327)
T ss_dssp --CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred --CCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 0112233456679999999999999999998763
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-27 Score=243.91 Aligned_cols=192 Identities=17% Similarity=0.185 Sum_probs=138.8
Q ss_pred hHHHHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch---hHHHHHHHHHHHhhcccCCCcceeeeeccC
Q 037488 419 YLELFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR---EAFKNFDIECDMMKHIRHRNLIKIISSCSN 494 (628)
Q Consensus 419 ~~~l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 494 (628)
+.+.....++|...+.||+|+||.||+|+. .+++.||+|+++.... .....+.+|+.++..++|||||+++++|.+
T Consensus 66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 145 (437)
T 4aw2_A 66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD 145 (437)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence 344555678999999999999999999997 5689999999975321 223448899999999999999999998765
Q ss_pred CCcc-------------------------------------------------------------------ccccccccc
Q 037488 495 DDFK-------------------------------------------------------------------ADFGMAKPL 507 (628)
Q Consensus 495 ~~~~-------------------------------------------------------------------~DFGla~~~ 507 (628)
++.. +|||+|+..
T Consensus 146 ~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~ 225 (437)
T 4aw2_A 146 DNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKL 225 (437)
T ss_dssp SSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred CCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhhhc
Confidence 4321 499999866
Q ss_pred cccCcccccccccccccccCccccc-----cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccc
Q 037488 508 LKEDQSLIQTQTLATIGYMAPEYGR-----EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVM 582 (628)
Q Consensus 508 ~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 582 (628)
..... ......+||++|||||++. ++.|+.++||||+||++|||++|++||.+....+ ........
T Consensus 226 ~~~~~-~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~-~~~~i~~~------- 296 (437)
T 4aw2_A 226 MEDGT-VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVE-TYGKIMNH------- 296 (437)
T ss_dssp CTTSC-EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHTH-------
T ss_pred ccCCC-cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhH-HHHhhhhc-------
Confidence 44322 2234468999999999987 5679999999999999999999999997532111 11111100
Q ss_pred eeecccccCCcccchhchhhhHHHHHHHhhcccCCCccc--CCCCCC
Q 037488 583 KVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEE--RVNAKE 627 (628)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~--Rpt~~e 627 (628)
...... +.....++.++++|+.+||..+|++ ||+++|
T Consensus 297 -----~~~~~~---p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~e 335 (437)
T 4aw2_A 297 -----KERFQF---PTQVTDVSENAKDLIRRLICSREHRLGQNGIED 335 (437)
T ss_dssp -----HHHCCC---CSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHH
T ss_pred -----cccccC---CcccccCCHHHHHHHHHHhcccccccCCCCHHH
Confidence 000000 0111235677999999999999988 998865
|
| >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-26 Score=233.64 Aligned_cols=178 Identities=20% Similarity=0.294 Sum_probs=125.5
Q ss_pred hcCCCcccccccCCccEEEEEEe----cCCcEEEEEEeeccc----hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI----HYGMEVAVKVFDLQY----REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 497 (628)
.++|...+.||+|+||.||+|+. .+|+.||+|+++... ......+.+|++++++++|||||++++++..++.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 46789999999999999999986 468999999997532 2334567899999999999999999998765432
Q ss_pred c------------------------------------------------------------------ccccccccccccC
Q 037488 498 K------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 498 ~------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
. +|||+|+......
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~ 175 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDG 175 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSCC-------
T ss_pred EEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCcccccccCC
Confidence 1 3999998643322
Q ss_pred cccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 512 QSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
......+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ....... ...
T Consensus 176 --~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-----~~~~~~i------------~~~ 236 (327)
T 3a62_A 176 --TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENR-----KKTIDKI------------LKC 236 (327)
T ss_dssp -----CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHHHHH------------HHT
T ss_pred --ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCH-----HHHHHHH------------HhC
Confidence 122456799999999999999999999999999999999999999975321 1111110 000
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
. ...+...+.++.+++.+||+.||++||++.
T Consensus 237 ~----~~~p~~~~~~~~~li~~~L~~dp~~R~~~~ 267 (327)
T 3a62_A 237 K----LNLPPYLTQEARDLLKKLLKRNAASRLGAG 267 (327)
T ss_dssp C----CCCCTTSCHHHHHHHHHHSCSCGGGSTTSS
T ss_pred C----CCCCCCCCHHHHHHHHHHHhcCHhhccCCC
Confidence 0 112234566799999999999999999654
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-26 Score=231.10 Aligned_cols=198 Identities=19% Similarity=0.195 Sum_probs=131.6
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
++|...+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|++++++++||||+++++++..++..
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 5788999999999999999997 569999999986532 33456788999999999999999999987654321
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|+....... ...
T Consensus 83 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~ 160 (311)
T 4agu_A 83 YCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSD--YYD 160 (311)
T ss_dssp CCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC---------
T ss_pred eCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCccc--ccC
Confidence 39999986543321 224
Q ss_pred cccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcc---c------eeecc
Q 037488 518 QTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISV---M------KVVDA 587 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~ 587 (628)
..+||++|+|||++.+ ..++.++||||+||++|||++|+.||......+ ............. . .....
T Consensus 161 ~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (311)
T 4agu_A 161 DEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVD--QLYLIRKTLGDLIPRHQQVFSTNQYFSG 238 (311)
T ss_dssp -----GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH--HHHHHHHHHCSCCHHHHHHHHTCGGGTT
T ss_pred CCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHHHhccccccccccccccccccc
Confidence 5579999999999876 568999999999999999999999997532211 1111111110000 0 00000
Q ss_pred cccC---CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLS---QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~---~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.... ...........++.++.+++.+||+.||++|||++|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el 282 (311)
T 4agu_A 239 VKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQL 282 (311)
T ss_dssp CCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHH
T ss_pred CcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHH
Confidence 0000 0000011113456779999999999999999998763
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.2e-27 Score=235.03 Aligned_cols=194 Identities=19% Similarity=0.329 Sum_probs=134.5
Q ss_pred hhhHHHHHhhcCCCcccccccCCccEEEEEEecCCcEEEEEEeecc--chhHHHHHHHHHHHhhccc--CCCcceeeeec
Q 037488 417 LTYLELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIR--HRNLIKIISSC 492 (628)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~ 492 (628)
+.+..+....++|...+.||+|+||.||+|...+++.||||++... .....+.+.+|++++++++ ||||+++++++
T Consensus 18 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~ 97 (313)
T 3cek_A 18 LYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYE 97 (313)
T ss_dssp --CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEE
T ss_pred CCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEe
Confidence 3333444556779999999999999999999888999999999753 3345677899999999997 59999999987
Q ss_pred cCCCcc----------------------------------------------------------------cccccccccc
Q 037488 493 SNDDFK----------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 493 ~~~~~~----------------------------------------------------------------~DFGla~~~~ 508 (628)
..++.. +|||+++...
T Consensus 98 ~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~kL~Dfg~~~~~~ 177 (313)
T 3cek_A 98 ITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQ 177 (313)
T ss_dssp ECSSEEEEEECCCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTEEEECCCSSSCC--
T ss_pred ecCCEEEEEEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEECCeEEEeecccccccc
Confidence 654321 4999998764
Q ss_pred ccCcccccccccccccccCcccccc-----------CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhc
Q 037488 509 KEDQSLIQTQTLATIGYMAPEYGRE-----------GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL 577 (628)
Q Consensus 509 ~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~ 577 (628)
............||+.|+|||++.+ ..++.++||||+||++|||++|+.||..............
T Consensus 178 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~---- 253 (313)
T 3cek_A 178 PDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAII---- 253 (313)
T ss_dssp ------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHH----
T ss_pred CccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH----
Confidence 4332222344579999999999875 4689999999999999999999999975322111111111
Q ss_pred CCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 578 PISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
++.. ....+..++.++.+++.+||+.||++|||+.|+
T Consensus 254 --------~~~~------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el 290 (313)
T 3cek_A 254 --------DPNH------EIEFPDIPEKDLQDVLKCCLKRDPKQRISIPEL 290 (313)
T ss_dssp --------CTTS------CCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred --------hccc------ccCCcccchHHHHHHHHHHccCCcccCcCHHHH
Confidence 1100 011122335668999999999999999998763
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-26 Score=233.96 Aligned_cols=184 Identities=20% Similarity=0.355 Sum_probs=122.7
Q ss_pred HhhcCCCcccccccCCccEEEEEEec-CCc---EEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRIH-YGM---EVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF 497 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~---~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 497 (628)
...++|...+.||+|+||.||+|+.. ++. .||||+++.. .....+.+.+|++++++++||||+++++++...+.
T Consensus 20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 99 (323)
T 3qup_A 20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA 99 (323)
T ss_dssp CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence 34568999999999999999999874 333 7999999754 33456789999999999999999999987643210
Q ss_pred c------------------------------------------------------------------------------c
Q 037488 498 K------------------------------------------------------------------------------A 499 (628)
Q Consensus 498 ~------------------------------------------------------------------------------~ 499 (628)
. +
T Consensus 100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~~~kl~ 179 (323)
T 3qup_A 100 KGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVA 179 (323)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEEC
T ss_pred ccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCCCEEEe
Confidence 0 3
Q ss_pred cccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcC
Q 037488 500 DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLP 578 (628)
Q Consensus 500 DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~ 578 (628)
|||+|+...............||+.|+|||++.+..++.++||||+||++|||++ |+.||....... .......
T Consensus 180 Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--~~~~~~~--- 254 (323)
T 3qup_A 180 DFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAE--IYNYLIG--- 254 (323)
T ss_dssp CCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHHHT---
T ss_pred eccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHH--HHHHHhc---
Confidence 9999987644332222234458889999999999999999999999999999999 999997532211 1111100
Q ss_pred CccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 579 ISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
. .....+..++.++.+++.+||+.||++|||+.|
T Consensus 255 ------------~---~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ 288 (323)
T 3qup_A 255 ------------G---NRLKQPPECMEEVYDLMYQCWSADPKQRPSFTC 288 (323)
T ss_dssp ------------T---CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHH
T ss_pred ------------C---CCCCCCCccCHHHHHHHHHHccCChhhCcCHHH
Confidence 0 011123345677999999999999999999765
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-26 Score=245.44 Aligned_cols=182 Identities=24% Similarity=0.368 Sum_probs=132.7
Q ss_pred hhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
..++|...+.||+|+||.||+|.+..+..||||+++.... ..+.|.+|++++++++|||||+++++|.++...
T Consensus 182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~iv~e~~ 260 (452)
T 1fmk_A 182 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYM 260 (452)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCC
T ss_pred ChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcCCceEEEehhh
Confidence 3456788899999999999999997778899999975432 346789999999999999999999988653211
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|+...... .....
T Consensus 261 ~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~-~~~~~ 339 (452)
T 1fmk_A 261 SKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-YTARQ 339 (452)
T ss_dssp TTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC------------
T ss_pred cCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCccceecCCCc-eeccc
Confidence 4999998654321 11223
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...||+.|+|||++.++.++.++|||||||++|||+| |+.||.+....+ ....+.. ..+
T Consensus 340 ~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~------------------~~~ 399 (452)
T 1fmk_A 340 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--VLDQVER------------------GYR 399 (452)
T ss_dssp ---CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHHHT------------------TCC
T ss_pred CCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHc------------------CCC
Confidence 3458899999999999999999999999999999999 999997532111 1111100 011
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+.+..++.++.+++.+||+.||++|||+++|
T Consensus 400 ~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l 431 (452)
T 1fmk_A 400 MPCPPECPESLHDLMCQCWRKEPEERPTFEYL 431 (452)
T ss_dssp CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 22334567789999999999999999998753
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-26 Score=244.43 Aligned_cols=182 Identities=18% Similarity=0.257 Sum_probs=137.6
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|...+.||+|+||.||+|+. .+|+.||||++.... ......+.+|++++++++|||||++++++...+..
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 46788899999999999999997 579999999997543 22346788999999999999999998876543211
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||+|+......
T Consensus 264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~ 343 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQ 343 (543)
T ss_dssp ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTC
T ss_pred EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecceeeeccCCC
Confidence 4999998754332
Q ss_pred cccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 512 QSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
. .....+||+.|||||++.+..|+.++||||+||++|||++|++||...... .....+..... ..
T Consensus 344 ~--~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~-~~~~~~~~~i~------------~~ 408 (543)
T 3c4z_A 344 T--KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEK-VENKELKQRVL------------EQ 408 (543)
T ss_dssp C--CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCC-CCHHHHHHHHH------------HC
T ss_pred c--ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccc-hhHHHHHHHHh------------hc
Confidence 1 224458999999999999999999999999999999999999999764221 11122211110 00
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
....+..++.++.+++.+||+.||++||++.
T Consensus 409 ----~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~ 439 (543)
T 3c4z_A 409 ----AVTYPDKFSPASKDFCEALLQKDPEKRLGFR 439 (543)
T ss_dssp ----CCCCCTTSCHHHHHHHHHHSCSSGGGSCCCB
T ss_pred ----ccCCCcccCHHHHHHHHHhccCCHhHCCCCc
Confidence 0112334567799999999999999999874
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-26 Score=228.40 Aligned_cols=180 Identities=17% Similarity=0.256 Sum_probs=137.5
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|...+.||+|+||.||+|+. .+++.||+|++... .....+.+.+|+.+++.++||||+++++++.+++..
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 46788899999999999999997 56899999998754 234456788999999999999999999988664321
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++....... .
T Consensus 94 ~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~--~ 171 (294)
T 2rku_A 94 LELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE--R 171 (294)
T ss_dssp EECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTC--C
T ss_pred EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccCceecccCcc--c
Confidence 39999986543221 2
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
.....||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......... .
T Consensus 172 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-----~~~~~~~~~------------~---- 230 (294)
T 2rku_A 172 KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL-----KETYLRIKK------------N---- 230 (294)
T ss_dssp BCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHHT------------T----
T ss_pred cccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHhh------------c----
Confidence 2345799999999999998999999999999999999999999965321 111111000 0
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+...+.++.+++.+||+.||++|||+.|+
T Consensus 231 ~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l 263 (294)
T 2rku_A 231 EYSIPKHINPVAASLIQKMLQTDPTARPTINEL 263 (294)
T ss_dssp CCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGG
T ss_pred cCCCccccCHHHHHHHHHHcccChhhCcCHHHH
Confidence 011222345678999999999999999999875
|
| >2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-26 Score=233.78 Aligned_cols=178 Identities=17% Similarity=0.198 Sum_probs=135.0
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc-
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~- 498 (628)
..++|...+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|.+++..+ +||+|+++++++...+..
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 357899999999999999999987 468999999997542 23456688999999988 899999999877653321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+......
T Consensus 98 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~-- 175 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDG-- 175 (353)
T ss_dssp EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT--
T ss_pred EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCcccccccCC--
Confidence 4999998643222
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
....+.+||+.|+|||++.+..|+.++||||+||++|||++|++||..... ....... ....
T Consensus 176 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~-----~~~~~~i------------~~~~- 237 (353)
T 2i0e_A 176 VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE-----DELFQSI------------MEHN- 237 (353)
T ss_dssp CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHH------------HHCC-
T ss_pred cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH-----HHHHHHH------------HhCC-
Confidence 123456899999999999999999999999999999999999999965321 1111111 0000
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
...|...+.++.+++.+||+.||++||++
T Consensus 238 ---~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 266 (353)
T 2i0e_A 238 ---VAYPKSMSKEAVAICKGLMTKHPGKRLGC 266 (353)
T ss_dssp ---CCCCTTSCHHHHHHHHHHTCSCTTSCTTC
T ss_pred ---CCCCCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence 11223456779999999999999999976
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-26 Score=228.53 Aligned_cols=179 Identities=20% Similarity=0.270 Sum_probs=133.0
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
+.++|...+.||+|+||.||+|.. .+++.||||++.... ......+.+|++++++++||||+++++++.++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 86 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL 86 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence 456789999999999999999987 568899999996532 22346688999999999999999999988664321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||++.......
T Consensus 87 v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~--- 163 (279)
T 3fdn_A 87 ILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR--- 163 (279)
T ss_dssp EECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCEESCC-------
T ss_pred EEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEeccccccCCccc---
Confidence 3999886543221
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
.....||+.|+|||++.+..++.++||||+||++|||++|+.||..... ........ .
T Consensus 164 -~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~------------~---- 221 (279)
T 3fdn_A 164 -RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY-----QETYKRIS------------R---- 221 (279)
T ss_dssp -----CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHH------------H----
T ss_pred -ccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcH-----HHHHHHHH------------h----
Confidence 2345799999999999999999999999999999999999999965211 11111000 0
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.|+
T Consensus 222 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~ 255 (279)
T 3fdn_A 222 VEFTFPDFVTEGARDLISRLLKHNPSQRPMLREV 255 (279)
T ss_dssp TCCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHhccChhhCCCHHHH
Confidence 0011223345678999999999999999998764
|
| >3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-26 Score=237.80 Aligned_cols=196 Identities=21% Similarity=0.224 Sum_probs=134.4
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCC------
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD------ 496 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 496 (628)
...++|...+.||+|+||.||+|+. .+|+.||||++..... ...+|+++++.++|||||++++++....
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~ 79 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP 79 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence 4567899999999999999999987 6799999999865422 2347999999999999999998872210
Q ss_pred --------------------------------cc----------------------------------------------
Q 037488 497 --------------------------------FK---------------------------------------------- 498 (628)
Q Consensus 497 --------------------------------~~---------------------------------------------- 498 (628)
..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~ 159 (383)
T 3eb0_A 80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHS 159 (383)
T ss_dssp ------------------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00
Q ss_pred ------------------------ccccccccccccCcccccccccccccccCccccccCc-cCcccchhhHhHHHHHHh
Q 037488 499 ------------------------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETF 553 (628)
Q Consensus 499 ------------------------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~l 553 (628)
+|||+|+...... .....+||++|+|||++.+.. |+.++||||+||++|||+
T Consensus 160 ~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell 236 (383)
T 3eb0_A 160 LGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE---PSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELI 236 (383)
T ss_dssp TTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS---CCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHH
T ss_pred CcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC---CCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHH
Confidence 3999998664332 224567999999999988754 999999999999999999
Q ss_pred hCCCCCCcccCCCccHHHHHHhhcCCc----------cceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCC
Q 037488 554 TRKKPTDEIFSGEMTLKHWVNDLLPIS----------VMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERV 623 (628)
Q Consensus 554 tg~~p~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp 623 (628)
+|++||.+....+ .+...+....... .....-+.. .........+..++.++.+|+.+||+.||++||
T Consensus 237 ~g~~pf~~~~~~~-~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ 314 (383)
T 3eb0_A 237 LGKPLFSGETSID-QLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTL-KAKDWRKILPEGTPSLAIDLLEQILRYEPDLRI 314 (383)
T ss_dssp HSSCSSCCSSHHH-HHHHHHHHHCCCCHHHHHHHCTTC--CCCCCC-CCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSC
T ss_pred hCCCCCCCCChHH-HHHHHHHHhCCCCHHHHHHhCcccccccCCcc-CcccHHhhCCCCCCHHHHHHHHHHccCChhhCC
Confidence 9999997532211 1222211111100 000000000 001111223445677899999999999999999
Q ss_pred CCCCC
Q 037488 624 NAKEI 628 (628)
Q Consensus 624 t~~ev 628 (628)
|+.|+
T Consensus 315 t~~e~ 319 (383)
T 3eb0_A 315 NPYEA 319 (383)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 98763
|
| >3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-26 Score=233.24 Aligned_cols=197 Identities=17% Similarity=0.154 Sum_probs=136.8
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhccc-CCCcceeeeeccCCCc--c---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIR-HRNLIKIISSCSNDDF--K--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~--~--- 498 (628)
.++|...+.||+|+||.||+|+. .+++.||||+++... .+.+.+|++++++++ ||||+++++++..... .
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv 111 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV 111 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence 46789999999999999999986 679999999997433 356889999999997 9999999998765211 0
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|+....... ..
T Consensus 112 ~e~~~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~ 188 (330)
T 3nsz_A 112 FEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE---YN 188 (330)
T ss_dssp EECCCCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCC---CC
T ss_pred EeccCchhHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCc---cc
Confidence 49999986543322 24
Q ss_pred cccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccce-------------
Q 037488 518 QTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMK------------- 583 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~------------- 583 (628)
...||..|+|||++.+ ..++.++||||+||++|||++|+.||.........+..............
T Consensus 189 ~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (330)
T 3nsz_A 189 VRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRF 268 (330)
T ss_dssp SCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHH
T ss_pred cccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccch
Confidence 5679999999999887 66999999999999999999999999543222111211111110000000
Q ss_pred --eecccccCCc--ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 584 --VVDAHLLSQE--DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 584 --~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......... ......+..++.++.+++.+||+.||++|||+.|+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~ 317 (330)
T 3nsz_A 269 NDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREA 317 (330)
T ss_dssp HHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred hhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHH
Confidence 0000000000 00111222357789999999999999999998764
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-26 Score=232.82 Aligned_cols=181 Identities=17% Similarity=0.254 Sum_probs=138.0
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
..++|...+.||+|+||.||+++. .+++.||+|++... .....+.+.+|+.+++.++||||+++++++.+++..
T Consensus 39 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 118 (335)
T 2owb_A 39 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV 118 (335)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred cCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEE
Confidence 346788899999999999999987 56889999999754 234567789999999999999999999988664321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+++.......
T Consensus 119 v~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~-- 196 (335)
T 2owb_A 119 VLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE-- 196 (335)
T ss_dssp EECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTC--
T ss_pred EEecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCceecccCcc--
Confidence 39999986543221
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
......||+.|+|||++.+..++.++|||||||++|||++|+.||..... ........ ..
T Consensus 197 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~~~------------~~--- 256 (335)
T 2owb_A 197 RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL-----KETYLRIK------------KN--- 256 (335)
T ss_dssp CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHH------------HT---
T ss_pred cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCH-----HHHHHHHh------------cC---
Confidence 22445799999999999999999999999999999999999999965321 11111000 00
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++.+++.+||+.||++|||+.|+
T Consensus 257 -~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el 289 (335)
T 2owb_A 257 -EYSIPKHINPVAASLIQKMLQTDPTARPTINEL 289 (335)
T ss_dssp -CCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGG
T ss_pred -CCCCCccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 011222345668999999999999999999875
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-27 Score=237.48 Aligned_cols=183 Identities=21% Similarity=0.364 Sum_probs=131.7
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcE----EEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGME----VAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
.++|...+.||+|+||.||+|+. .+++. ||+|.+.... ....+.+.+|+.++++++|||||+++++|.++...
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~ 91 (325)
T 3kex_A 12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQL 91 (325)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECBSSEEE
T ss_pred HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCccEE
Confidence 45788889999999999999986 45554 7777775332 22345678899999999999999999988653321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+........
T Consensus 92 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~ 171 (325)
T 3kex_A 92 VTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQ 171 (325)
T ss_dssp EEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTC
T ss_pred EEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCcccccCccccc
Confidence 399999976544333
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.......||..|+|||++.++.|+.++||||+||++|||+| |+.||...... .........
T Consensus 172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--~~~~~~~~~---------------- 233 (325)
T 3kex_A 172 LLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLA--EVPDLLEKG---------------- 233 (325)
T ss_dssp CC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTT--HHHHHHHTT----------------
T ss_pred ccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHH--HHHHHHHcC----------------
Confidence 33345578999999999999999999999999999999999 99999764321 111111110
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.|+
T Consensus 234 --~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el 267 (325)
T 3kex_A 234 --ERLAQPQICTIDVYMVMVKCWMIDENIRPTFKEL 267 (325)
T ss_dssp --CBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHH
T ss_pred --CCCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHH
Confidence 0011122344458899999999999999998763
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-26 Score=230.54 Aligned_cols=184 Identities=20% Similarity=0.335 Sum_probs=137.5
Q ss_pred hcCCCcccccccCCccEEEEEEe------cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI------HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDF 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 497 (628)
.++|...+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|+++++++ +||||++++++|..++.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~ 101 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP 101 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence 46788889999999999999974 357899999997543 34457789999999999 99999999998753210
Q ss_pred ----------------------------------------c---------------------------------------
Q 037488 498 ----------------------------------------K--------------------------------------- 498 (628)
Q Consensus 498 ----------------------------------------~--------------------------------------- 498 (628)
.
T Consensus 102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~ 181 (313)
T 1t46_A 102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHG 181 (313)
T ss_dssp CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEETT
T ss_pred cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEcCC
Confidence 0
Q ss_pred -----ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHH
Q 037488 499 -----ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHW 572 (628)
Q Consensus 499 -----~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~ 572 (628)
+|||+++...............||+.|+|||++.+..++.++||||+||++|||+| |+.||....... .....
T Consensus 182 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-~~~~~ 260 (313)
T 1t46_A 182 RITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDS-KFYKM 260 (313)
T ss_dssp TEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSH-HHHHH
T ss_pred CCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchh-HHHHH
Confidence 39999987654433323344568899999999999999999999999999999999 999997643221 11111
Q ss_pred HHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 573 VNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..... ....+..++.++.+++.+||+.||++|||+.|+
T Consensus 261 ~~~~~------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el 298 (313)
T 1t46_A 261 IKEGF------------------RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQI 298 (313)
T ss_dssp HHHTC------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred hccCC------------------CCCCcccCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence 11110 011123456679999999999999999998763
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-26 Score=227.36 Aligned_cols=179 Identities=25% Similarity=0.367 Sum_probs=125.3
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccch----hHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYR----EAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|...+.||+|+||.||+|+.. |+.||||+++.... ...+.+.+|+++++.++||||++++++|..++..
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 467888999999999999999975 88999999865322 2346788999999999999999999987543211
Q ss_pred -------------------------------------------------------------------------ccccccc
Q 037488 499 -------------------------------------------------------------------------ADFGMAK 505 (628)
Q Consensus 499 -------------------------------------------------------------------------~DFGla~ 505 (628)
+|||+++
T Consensus 85 ~e~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~ 164 (271)
T 3dtc_A 85 MEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAR 164 (271)
T ss_dssp EECCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC--
T ss_pred EEcCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCccc
Confidence 3777776
Q ss_pred cccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceee
Q 037488 506 PLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVV 585 (628)
Q Consensus 506 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (628)
...... .....||+.|+|||++.+..++.++||||+||++|||++|+.||....... .......
T Consensus 165 ~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-----~~~~~~~------- 228 (271)
T 3dtc_A 165 EWHRTT----KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLA-----VAYGVAM------- 228 (271)
T ss_dssp ---------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHH-----HHHHHHT-------
T ss_pred cccccc----ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-----HHHhhhc-------
Confidence 443221 124569999999999999999999999999999999999999997532111 0000000
Q ss_pred cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+..++.++.+++.+||+.||++|||+.|+
T Consensus 229 -------~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~ 264 (271)
T 3dtc_A 229 -------NKLALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNI 264 (271)
T ss_dssp -------SCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred -------CCCCCCCCcccCHHHHHHHHHHhcCCcccCcCHHHH
Confidence 000112233456779999999999999999998763
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-26 Score=237.60 Aligned_cols=199 Identities=15% Similarity=0.187 Sum_probs=140.6
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.+.|...+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||++++++...+..
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 45788899999999999999987 569999999997543 23356778999999999999999999887543210
Q ss_pred ----------------------------------------------------------------------cccccccccc
Q 037488 499 ----------------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 499 ----------------------------------------------------------------------~DFGla~~~~ 508 (628)
+|||+|+...
T Consensus 88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~ 167 (396)
T 4eut_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE 167 (396)
T ss_dssp ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECC
T ss_pred EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEcc
Confidence 3999998754
Q ss_pred ccCcccccccccccccccCcccccc--------CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHH--hhcC
Q 037488 509 KEDQSLIQTQTLATIGYMAPEYGRE--------GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVN--DLLP 578 (628)
Q Consensus 509 ~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~--~~~~ 578 (628)
... .....+||+.|+|||++.+ ..|+.++|||||||++|||++|+.||............... ...+
T Consensus 168 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p 244 (396)
T 4eut_A 168 DDE---QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKP 244 (396)
T ss_dssp CGG---GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCC
T ss_pred CCC---ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCC
Confidence 332 2245679999999999865 56899999999999999999999999754332222221111 1111
Q ss_pred Cccceeeccccc------CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 579 ISVMKVVDAHLL------SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 579 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
......+..... ...+.........+..+.+++.+||+.||++|||++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e 299 (396)
T 4eut_A 245 SGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQ 299 (396)
T ss_dssp TTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHH
T ss_pred cccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHH
Confidence 111111111000 1111122333567788999999999999999999875
|
| >3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-26 Score=234.60 Aligned_cols=204 Identities=19% Similarity=0.168 Sum_probs=139.5
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc----
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF---- 497 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 497 (628)
...++|...+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++||||+++++++.....
T Consensus 24 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 103 (364)
T 3qyz_A 24 DVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK 103 (364)
T ss_dssp CCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred cccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccc
Confidence 3456899999999999999999987 578999999997533 3445778999999999999999999998754321
Q ss_pred --c---------------------------------------------------------------ccccccccccccCc
Q 037488 498 --K---------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 498 --~---------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
. +|||+|+.......
T Consensus 104 ~~~iv~e~~~~~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~ 183 (364)
T 3qyz_A 104 DVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHD 183 (364)
T ss_dssp CEEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGC
T ss_pred eEEEEEcccCcCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcceEecCCCCC
Confidence 0 39999986543321
Q ss_pred c-cccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcc---ceeec-
Q 037488 513 S-LIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISV---MKVVD- 586 (628)
Q Consensus 513 ~-~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~- 586 (628)
. ......+||++|+|||++.+ ..++.++||||+||++|||++|++||.+....+ .............. ....+
T Consensus 184 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~ 262 (364)
T 3qyz_A 184 HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLD-QLNHILGILGSPSQEDLNCIINL 262 (364)
T ss_dssp BCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGG-HHHHHHHHHCSCCHHHHHTCCCH
T ss_pred ccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHH-HHHHHHHHhCCCCHHHHHHhhhh
Confidence 1 11244589999999998765 458999999999999999999999997643221 11111111111000 00000
Q ss_pred -------ccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 587 -------AHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 587 -------~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
................++.++.+++.+||+.||++|||+.|+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~ 311 (364)
T 3qyz_A 263 KARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQA 311 (364)
T ss_dssp HHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred hHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 000000000011223456779999999999999999998763
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-26 Score=233.98 Aligned_cols=200 Identities=16% Similarity=0.154 Sum_probs=130.8
Q ss_pred cCCCcc-cccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc-----
Q 037488 427 NGFSEN-NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 427 ~~~~~~-~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~----- 498 (628)
+.|... +.||+|+||.||+|.. .+++.||||+++.......+.+.+|+++++++ +||||+++++++.+++..
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e 91 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE 91 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence 567664 6899999999999986 57999999999765544567789999999985 799999999987543311
Q ss_pred ----------------------------------------------------------------ccccccccccccCc--
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQ-- 512 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~-- 512 (628)
+|||+++.......
T Consensus 92 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~ 171 (316)
T 2ac3_A 92 KMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCS 171 (316)
T ss_dssp CCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC---------
T ss_pred cCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccc
Confidence 38998876532211
Q ss_pred ---ccccccccccccccCcccccc-----CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcccee
Q 037488 513 ---SLIQTQTLATIGYMAPEYGRE-----GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKV 584 (628)
Q Consensus 513 ---~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (628)
.......+||+.|+|||++.+ ..|+.++||||+||++|||++|+.||......+....... ..+......
T Consensus 172 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~--~~~~~~~~~ 249 (316)
T 2ac3_A 172 PISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGE--ACPACQNML 249 (316)
T ss_dssp ----------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC------CCHHHHHHH
T ss_pred cccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccc--cchhHHHHH
Confidence 111223469999999999875 5689999999999999999999999976433221000000 000000000
Q ss_pred ecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 585 VDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...............+..++.++.+++.+||+.||++|||+.|+
T Consensus 250 ~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~ 293 (316)
T 2ac3_A 250 FESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQV 293 (316)
T ss_dssp HHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred HHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHH
Confidence 00001111111111223456779999999999999999998763
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-26 Score=229.62 Aligned_cols=184 Identities=20% Similarity=0.240 Sum_probs=125.3
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
..++|...+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+.++++++||||+++++++..++..
T Consensus 32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l 111 (309)
T 2h34_A 32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV 111 (309)
T ss_dssp --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence 357899999999999999999987 579999999997542 23357789999999999999999999987653321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+++...... ..
T Consensus 112 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~-~~ 190 (309)
T 2h34_A 112 DMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTDEK-LT 190 (309)
T ss_dssp EEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC-----------
T ss_pred EEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccCccccccc-cc
Confidence 3999987654322 11
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
......||+.|+|||++.+..++.++||||+||++|||++|+.||...... ........ ...
T Consensus 191 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~----------------~~~ 252 (309)
T 2h34_A 191 QLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS--VMGAHINQ----------------AIP 252 (309)
T ss_dssp ------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH--HHHHHHHS----------------CCC
T ss_pred cccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH--HHHHHhcc----------------CCC
Confidence 223457999999999999999999999999999999999999999653211 11111100 000
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCC-CCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERV-NAKE 627 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-t~~e 627 (628)
.....+..++.++.+++.+||+.||++|| |+++
T Consensus 253 ~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~ 286 (309)
T 2h34_A 253 RPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGD 286 (309)
T ss_dssp CGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHH
T ss_pred CccccCCCCCHHHHHHHHHhccCCHHHHHHhHHH
Confidence 11122334566799999999999999999 6654
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-26 Score=228.25 Aligned_cols=181 Identities=24% Similarity=0.375 Sum_probs=131.1
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--------
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-------- 498 (628)
.|.....||+|+||.||+|.. .+++.||||++........+.+.+|+.+++.++||||+++++++...+..
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 102 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP 102 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence 455566899999999999987 67899999999876555567789999999999999999999987543211
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++...... ...
T Consensus 103 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~--~~~ 180 (295)
T 2clq_A 103 GGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN--PCT 180 (295)
T ss_dssp EEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-------
T ss_pred CCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccccCCCC--Ccc
Confidence 3899887653321 112
Q ss_pred ccccccccccCccccccCc--cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 517 TQTLATIGYMAPEYGREGR--VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~--~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
....||+.|+|||++.++. ++.++|||||||++|||++|+.||.......... +..... .
T Consensus 181 ~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~--~~~~~~----------------~ 242 (295)
T 2clq_A 181 ETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAM--FKVGMF----------------K 242 (295)
T ss_dssp CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHH--HHHHHH----------------C
T ss_pred cccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHH--Hhhccc----------------c
Confidence 3457999999999997654 8999999999999999999999996532211110 000000 0
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.|+
T Consensus 243 ~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l 276 (295)
T 2clq_A 243 VHPEIPESMSAEAKAFILKCFEPDPDKRACANDL 276 (295)
T ss_dssp CCCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHH
T ss_pred ccccccccCCHHHHHHHHHHccCChhhCCCHHHH
Confidence 0112233456779999999999999999998653
|
| >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-26 Score=235.03 Aligned_cols=178 Identities=21% Similarity=0.242 Sum_probs=126.7
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHH-hhcccCCCcceeeeeccCCCcc--
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDM-MKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
.++|...+.||+|+||.||+|+. .+++.||||+++... ......+.+|..+ ++.++|||||++++++..++..
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 46788999999999999999987 568999999997543 2234556777776 5778999999999887654321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+|+...... .
T Consensus 117 v~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~--~ 194 (373)
T 2r5t_A 117 VLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHN--S 194 (373)
T ss_dssp EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCC--C
T ss_pred EEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCccccccccCC--C
Confidence 4999998643322 2
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
...+.+||+.|+|||++.+..|+.++||||+||++|||++|+.||..... ....... ....
T Consensus 195 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~-----~~~~~~i------------~~~~-- 255 (373)
T 2r5t_A 195 TTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT-----AEMYDNI------------LNKP-- 255 (373)
T ss_dssp CCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBH-----HHHHHHH------------HHSC--
T ss_pred ccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH-----HHHHHHH------------Hhcc--
Confidence 23556899999999999999999999999999999999999999965321 1111111 0000
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
...+..++.++.+++.+||+.||++||++.
T Consensus 256 --~~~~~~~~~~~~~li~~lL~~dp~~R~~~~ 285 (373)
T 2r5t_A 256 --LQLKPNITNSARHLLEGLLQKDRTKRLGAK 285 (373)
T ss_dssp --CCCCSSSCHHHHHHHHHHTCSSGGGSTTTT
T ss_pred --cCCCCCCCHHHHHHHHHHcccCHHhCCCCC
Confidence 112234566799999999999999999985
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-26 Score=237.96 Aligned_cols=183 Identities=24% Similarity=0.374 Sum_probs=136.5
Q ss_pred hcCCCcccccccCCccEEEEEEe--------cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCC
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI--------HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHI-RHRNLIKIISSCSND 495 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~--------~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 495 (628)
.++|...+.||+|+||.||+|+. ..++.||||+++.. .....+.+.+|+++++++ +|||||+++++|..+
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 147 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence 46788889999999999999985 22467999999754 344567789999999999 999999999987542
Q ss_pred Cc--------------------------------------c---------------------------------------
Q 037488 496 DF--------------------------------------K--------------------------------------- 498 (628)
Q Consensus 496 ~~--------------------------------------~--------------------------------------- 498 (628)
+. .
T Consensus 148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~ 227 (382)
T 3tt0_A 148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTED 227 (382)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTT
T ss_pred CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceEEEcCC
Confidence 11 0
Q ss_pred -----ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHH
Q 037488 499 -----ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHW 572 (628)
Q Consensus 499 -----~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~ 572 (628)
+|||+|+...............||+.|+|||++.+..++.++|||||||++|||++ |+.||..... ..+
T Consensus 228 ~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~-----~~~ 302 (382)
T 3tt0_A 228 NVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV-----EEL 302 (382)
T ss_dssp CCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH-----HHH
T ss_pred CcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH-----HHH
Confidence 39999987644332223344568999999999999999999999999999999999 9999965321 111
Q ss_pred HHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 573 VNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....... .....+..++.++.+++.+||+.||++|||+.||
T Consensus 303 ~~~~~~~---------------~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~el 343 (382)
T 3tt0_A 303 FKLLKEG---------------HRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQL 343 (382)
T ss_dssp HHHHHTT---------------CCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHHHHcC---------------CCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 1111000 0111233456779999999999999999998764
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-26 Score=228.34 Aligned_cols=183 Identities=20% Similarity=0.310 Sum_probs=126.6
Q ss_pred hhcCCCcccccccCCccEEEEEEec----CCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIH----YGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
..++|...+.||+|+||.||+|... .+..||+|+++.. .....+.+.+|+.++++++||||+++++++.++...
T Consensus 13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~l 92 (281)
T 1mp8_A 13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWI 92 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEE
T ss_pred ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEccCccEE
Confidence 3567888999999999999999863 2567999998653 334456789999999999999999999987553321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+.......
T Consensus 93 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~- 171 (281)
T 1mp8_A 93 IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY- 171 (281)
T ss_dssp EEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC-------------
T ss_pred EEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECccccccccCcccc-
Confidence 39999986543221
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.......||+.|+|||++.+..++.++||||+||++|||++ |+.||......+ ........
T Consensus 172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~--~~~~i~~~---------------- 233 (281)
T 1mp8_A 172 YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND--VIGRIENG---------------- 233 (281)
T ss_dssp -------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHHHTT----------------
T ss_pred cccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHH--HHHHHHcC----------------
Confidence 12233457889999999998999999999999999999997 999997543221 11111100
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.|+
T Consensus 234 --~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l 267 (281)
T 1mp8_A 234 --ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL 267 (281)
T ss_dssp --CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred --CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 0112233567779999999999999999998763
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-26 Score=235.46 Aligned_cols=181 Identities=20% Similarity=0.270 Sum_probs=131.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF------ 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------ 497 (628)
.++|+..+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||+++++|.+...
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 45788899999999999999997 479999999997543 3345778999999999999999999987522110
Q ss_pred --------------------------------------------------------------------------------
Q 037488 498 -------------------------------------------------------------------------------- 497 (628)
Q Consensus 498 -------------------------------------------------------------------------------- 497 (628)
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~ 164 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG 164 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence
Q ss_pred ----------------------------------------cccccccccccccCcc----------cccccccccccccC
Q 037488 498 ----------------------------------------KADFGMAKPLLKEDQS----------LIQTQTLATIGYMA 527 (628)
Q Consensus 498 ----------------------------------------~~DFGla~~~~~~~~~----------~~~~~~~gt~~y~a 527 (628)
.+|||+|+........ ......+||+.|+|
T Consensus 165 ~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a 244 (332)
T 3qd2_B 165 VCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMS 244 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccC
Confidence 0399999876443211 12234579999999
Q ss_pred ccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHH
Q 037488 528 PEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFV 607 (628)
Q Consensus 528 PE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (628)
||++.+..++.++||||+||++|||++|..|+... ....... .... .+..+...++++
T Consensus 245 PE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~-------~~~~~~~------------~~~~---~~~~~~~~~~~~ 302 (332)
T 3qd2_B 245 PEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER-------VRIITDV------------RNLK---FPLLFTQKYPQE 302 (332)
T ss_dssp HHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH-------HHHHHHH------------HTTC---CCHHHHHHCHHH
T ss_pred hHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH-------HHHHHHh------------hccC---CCcccccCChhH
Confidence 99999999999999999999999999998775321 0000000 0000 111223345668
Q ss_pred HHHhhcccCCCcccCCCCCCC
Q 037488 608 FNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 608 ~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+++.+||+.||++|||+.|+
T Consensus 303 ~~li~~~l~~~p~~Rps~~~~ 323 (332)
T 3qd2_B 303 HMMVQDMLSPSPTERPEATDI 323 (332)
T ss_dssp HHHHHHHHCSSGGGSCCHHHH
T ss_pred HHHHHHHccCCCCcCCCHHHH
Confidence 999999999999999998763
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-26 Score=230.19 Aligned_cols=184 Identities=23% Similarity=0.372 Sum_probs=137.6
Q ss_pred hhcCCCcccccccCCccEEEEEEe------cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI------HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 497 (628)
..++|...+.||+|+||.||+|.. .+++.||||+++.. .....+.+.+|++++++++||||+++++++..++.
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 100 (314)
T 2ivs_A 21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP 100 (314)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence 356788889999999999999975 23588999999754 34456778999999999999999999987643210
Q ss_pred ----------------------------------------------c---------------------------------
Q 037488 498 ----------------------------------------------K--------------------------------- 498 (628)
Q Consensus 498 ----------------------------------------------~--------------------------------- 498 (628)
.
T Consensus 101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dikp~N 180 (314)
T 2ivs_A 101 LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARN 180 (314)
T ss_dssp CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGG
T ss_pred eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCcccccchhe
Confidence 0
Q ss_pred -----------ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCC
Q 037488 499 -----------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGE 566 (628)
Q Consensus 499 -----------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~ 566 (628)
+|||+++...............||+.|+|||++.+..++.++||||+||++|||+| |+.||.......
T Consensus 181 Ili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~ 260 (314)
T 2ivs_A 181 ILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPER 260 (314)
T ss_dssp EEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG
T ss_pred EEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence 39999986644333222344568899999999999999999999999999999999 999997543211
Q ss_pred ccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 567 MTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
........ .....+..++.++.+++.+||+.||++|||+.|+
T Consensus 261 --~~~~~~~~------------------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l 302 (314)
T 2ivs_A 261 --LFNLLKTG------------------HRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADI 302 (314)
T ss_dssp --HHHHHHTT------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred --HHHHhhcC------------------CcCCCCccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 11111110 0112233456779999999999999999998763
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-26 Score=234.13 Aligned_cols=186 Identities=22% Similarity=0.321 Sum_probs=137.0
Q ss_pred HHhhcCCCcccccccCCccEEEEEEec------CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCC
Q 037488 423 FQATNGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSND 495 (628)
Q Consensus 423 ~~~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 495 (628)
....++|...+.||+|+||.||+|+.. +++.||||+++... ....+.+.+|++++++++||||++++++|..+
T Consensus 43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~ 122 (343)
T 1luf_A 43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVG 122 (343)
T ss_dssp BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC
Confidence 345678999999999999999999873 35889999997543 34467789999999999999999999986532
Q ss_pred Cc----------------------------------------------c-------------------------------
Q 037488 496 DF----------------------------------------------K------------------------------- 498 (628)
Q Consensus 496 ~~----------------------------------------------~------------------------------- 498 (628)
+. .
T Consensus 123 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp 202 (343)
T 1luf_A 123 KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLAT 202 (343)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSG
T ss_pred CceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCc
Confidence 10 0
Q ss_pred -------------ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccC
Q 037488 499 -------------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFS 564 (628)
Q Consensus 499 -------------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~ 564 (628)
+|||+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.....
T Consensus 203 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~ 282 (343)
T 1luf_A 203 RNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAH 282 (343)
T ss_dssp GGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH
T ss_pred ceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCCh
Confidence 39999986543322222344578999999999999999999999999999999999 9999965321
Q ss_pred CCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 565 GEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......... . ....+..++.++.+++.+||+.||++|||+.|+
T Consensus 283 -----~~~~~~~~~~------------~---~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~ 326 (343)
T 1luf_A 283 -----EEVIYYVRDG------------N---ILACPENCPLELYNLMRLCWSKLPADRPSFCSI 326 (343)
T ss_dssp -----HHHHHHHHTT------------C---CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred -----HHHHHHHhCC------------C---cCCCCCCCCHHHHHHHHHHcccCcccCCCHHHH
Confidence 1111111000 0 011233456779999999999999999998753
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-26 Score=229.18 Aligned_cols=180 Identities=22% Similarity=0.281 Sum_probs=128.6
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
+.|...+.||+|+||.||+|+. .+++.||+|++.... ....+.+.+|++++++++||||+++++++.+....
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 101 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET 101 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence 5688889999999999999987 578999999997643 23457789999999999999999999987653211
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||+|+......
T Consensus 102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~ 181 (285)
T 3is5_A 102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDE 181 (285)
T ss_dssp CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-----
T ss_pred CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcc
Confidence 3999997654322
Q ss_pred cccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 512 QSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
......||+.|+|||++. +.++.++||||+||++|||++|+.||....... .........+ ..
T Consensus 182 ---~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~--~~~~~~~~~~---------~~-- 244 (285)
T 3is5_A 182 ---HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEE--VQQKATYKEP---------NY-- 244 (285)
T ss_dssp --------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHCCC---------CC--
T ss_pred ---cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHH--HHhhhccCCc---------cc--
Confidence 124557999999999875 568999999999999999999999997532111 1111100000 00
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......++++.+++.+||+.||++|||+.||
T Consensus 245 -----~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~ 276 (285)
T 3is5_A 245 -----AVECRPLTPQAVDLLKQMLTKDPERRPSAAQV 276 (285)
T ss_dssp -----CC--CCCCHHHHHHHHHHTCSCTTTSCCHHHH
T ss_pred -----ccccCcCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 00011235568999999999999999998764
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-26 Score=234.85 Aligned_cols=186 Identities=20% Similarity=0.257 Sum_probs=136.6
Q ss_pred HHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--------hhHHHHHHHHHHHhhcc-cCCCcceeeeec
Q 037488 423 FQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--------REAFKNFDIECDMMKHI-RHRNLIKIISSC 492 (628)
Q Consensus 423 ~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l-~h~niv~l~~~~ 492 (628)
....++|...+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|+.+++++ +||||+++++++
T Consensus 90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 169 (365)
T 2y7j_A 90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY 169 (365)
T ss_dssp HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence 34457799999999999999999998 579999999986432 12245688999999999 799999999987
Q ss_pred cCCCcc------------------------------------------------------------------cccccccc
Q 037488 493 SNDDFK------------------------------------------------------------------ADFGMAKP 506 (628)
Q Consensus 493 ~~~~~~------------------------------------------------------------------~DFGla~~ 506 (628)
...... +|||+++.
T Consensus 170 ~~~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~ 249 (365)
T 2y7j_A 170 ESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCH 249 (365)
T ss_dssp EBSSEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred eeCCEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEecCcccc
Confidence 643311 39999987
Q ss_pred ccccCcccccccccccccccCcccccc------CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc
Q 037488 507 LLKEDQSLIQTQTLATIGYMAPEYGRE------GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS 580 (628)
Q Consensus 507 ~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~ 580 (628)
+.... .....+||+.|+|||++.+ ..|+.++||||+||++|||++|+.||..... ........
T Consensus 250 ~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~--~~~~~~i~------ 318 (365)
T 2y7j_A 250 LEPGE---KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQ--ILMLRMIM------ 318 (365)
T ss_dssp CCTTC---CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHH------
T ss_pred cCCCc---ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCH--HHHHHHHH------
Confidence 64332 2245679999999999863 3589999999999999999999999965211 11111110
Q ss_pred cceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 581 VMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
........+.+..++.++.+++.+||+.||++|||+.|+
T Consensus 319 ---------~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~el 357 (365)
T 2y7j_A 319 ---------EGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQA 357 (365)
T ss_dssp ---------HTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred ---------hCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 011111112223456779999999999999999998763
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=213.09 Aligned_cols=200 Identities=25% Similarity=0.247 Sum_probs=142.0
Q ss_pred CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCC
Q 037488 32 LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKY 111 (628)
Q Consensus 32 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~ 111 (628)
+++++++++++|.++. +|..+. ++++.|+|++|+++++.+..|.++++|+.|+|++|.++.++. ...+++
T Consensus 9 l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~l~~ 78 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------DGTLPV 78 (290)
T ss_dssp STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-------CSCCTT
T ss_pred cCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-------CCCCCc
Confidence 4456666666666664 343332 678888888888888888888888888888888888776532 256777
Q ss_pred CcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecc
Q 037488 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLE 191 (628)
Q Consensus 112 L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 191 (628)
|++|++++|.++. +|..+..+++|+.|++++|++++..+..|..+++|++|+|+
T Consensus 79 L~~L~Ls~N~l~~--------------------------l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 79 LGTLDLSHNQLQS--------------------------LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132 (290)
T ss_dssp CCEEECCSSCCSS--------------------------CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCc--------------------------CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC
Confidence 7777777777652 23345566777777888887776666677777777777777
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCc
Q 037488 192 YNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFT 267 (628)
Q Consensus 192 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~ 267 (628)
+|++.+..+..|..+++|+.|+|++|+++...+..|..+++|+.|+|++|+++.+|..++...+|++|++++|.+.
T Consensus 133 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 7777766666667777777777777777766666677777777777777777777777666666666666666554
|
| >4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-26 Score=236.50 Aligned_cols=197 Identities=19% Similarity=0.164 Sum_probs=134.8
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
.++|...+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+.+++.++||||+++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 46888899999999999999987 57999999999753 233457788999999999999999999987653310
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+.....
T Consensus 121 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~--- 197 (371)
T 4exu_A 121 DFYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAE--- 197 (371)
T ss_dssp CCEEEEECCCEEHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC---------
T ss_pred eEEEEEccccccHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCcccccccC---
Confidence 399999864322
Q ss_pred cccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhc-CC-ccceee-----
Q 037488 514 LIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL-PI-SVMKVV----- 585 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~-~~-~~~~~~----- 585 (628)
....+||++|+|||++.+ ..++.++||||+||++|||++|+.||......+ .+........ +. .....+
T Consensus 198 --~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 274 (371)
T 4exu_A 198 --MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILKVTGVPGTEFVQKLNDKAA 274 (371)
T ss_dssp ----CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCHHHHTTCSCHHH
T ss_pred --cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCcHHHHHHhhhhhh
Confidence 244679999999999887 679999999999999999999999997532111 1111111100 00 000000
Q ss_pred ----cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 ----DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..............+..++.++.+|+.+||+.||++|||+.|+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el 321 (371)
T 4exu_A 275 KSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQA 321 (371)
T ss_dssp HHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred hhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHH
Confidence 0000000000111223457789999999999999999998753
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-26 Score=237.19 Aligned_cols=179 Identities=17% Similarity=0.177 Sum_probs=123.8
Q ss_pred cCCCcc-cccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhc-ccCCCcceeeeeccC----CCc--
Q 037488 427 NGFSEN-NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKH-IRHRNLIKIISSCSN----DDF-- 497 (628)
Q Consensus 427 ~~~~~~-~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~l~~~~~~----~~~-- 497 (628)
++|... +.||+|+||+||+|.. .+|+.||||+++.. ..+.+|++++.+ .+||||+++++++.. +..
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~ 135 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 135 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence 456655 6899999999999987 57999999999632 345678888754 589999999887642 100
Q ss_pred ---------------------------------------------------------------------ccccccccccc
Q 037488 498 ---------------------------------------------------------------------KADFGMAKPLL 508 (628)
Q Consensus 498 ---------------------------------------------------------------------~~DFGla~~~~ 508 (628)
.+|||+|+...
T Consensus 136 lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~ 215 (400)
T 1nxk_A 136 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT 215 (400)
T ss_dssp EEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred EEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecccccccC
Confidence 04999998653
Q ss_pred ccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCcc--HHHHHHhhcCCccceeec
Q 037488 509 KEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMT--LKHWVNDLLPISVMKVVD 586 (628)
Q Consensus 509 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 586 (628)
... ...+.+||++|+|||++.+..|+.++|||||||++|||++|+.||......... ......
T Consensus 216 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~------------ 280 (400)
T 1nxk_A 216 SHN---SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIR------------ 280 (400)
T ss_dssp --------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHH------------
T ss_pred CCC---ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHH------------
Confidence 322 224568999999999999999999999999999999999999999754332211 111111
Q ss_pred ccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 587 AHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+........+..++.++.+|+.+||+.||++|||+.|+
T Consensus 281 ---~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ei 319 (400)
T 1nxk_A 281 ---MGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEF 319 (400)
T ss_dssp ---HTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred ---cCcccCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHH
Confidence 011111112233467789999999999999999998753
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-26 Score=233.91 Aligned_cols=185 Identities=19% Similarity=0.336 Sum_probs=136.1
Q ss_pred hhcCCCcccccccCCccEEEEEEe------cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCC
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI------HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDD 496 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 496 (628)
..++|...+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|+++++++ +||||+++++++..++
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 122 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG 122 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence 457888899999999999999985 246789999997542 33456789999999999 9999999999764321
Q ss_pred c---------------------------------------------c---------------------------------
Q 037488 497 F---------------------------------------------K--------------------------------- 498 (628)
Q Consensus 497 ~---------------------------------------------~--------------------------------- 498 (628)
. .
T Consensus 123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~N 202 (344)
T 1rjb_A 123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARN 202 (344)
T ss_dssp SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGG
T ss_pred ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhh
Confidence 0 0
Q ss_pred -----------ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCC
Q 037488 499 -----------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGE 566 (628)
Q Consensus 499 -----------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~ 566 (628)
+|||+|+...............||+.|+|||++.++.++.++|||||||++|||+| |+.||.......
T Consensus 203 Ill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~ 282 (344)
T 1rjb_A 203 VLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDA 282 (344)
T ss_dssp EEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH
T ss_pred EEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcHH
Confidence 39999987654433333344568999999999999999999999999999999998 999997643221
Q ss_pred ccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 567 MTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......... .....+..++.++.+++.+||+.||++|||+.||
T Consensus 283 -~~~~~~~~~------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 325 (344)
T 1rjb_A 283 -NFYKLIQNG------------------FKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNL 325 (344)
T ss_dssp -HHHHHHHTT------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred -HHHHHHhcC------------------CCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence 111111110 0111223456779999999999999999998763
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-26 Score=246.59 Aligned_cols=181 Identities=18% Similarity=0.249 Sum_probs=136.4
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
..++|...+.||+|+||.||+|+. .+|+.||||++.... ......+.+|++++++++|||||++++++.+++..
T Consensus 182 ~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~l 261 (576)
T 2acx_A 182 TKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCL 261 (576)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred cccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEE
Confidence 456799999999999999999987 579999999997532 22346688999999999999999999887653311
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+|+......
T Consensus 262 VmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~- 340 (576)
T 2acx_A 262 VLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQ- 340 (576)
T ss_dssp EECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTC-
T ss_pred EEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccceecccCc-
Confidence 4999998764332
Q ss_pred ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 513 SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.....+||+.|||||++.+..|+.++||||+||++|||++|++||....... .......... ..
T Consensus 341 --~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~-~~~~i~~~i~------------~~- 404 (576)
T 2acx_A 341 --TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI-KREEVERLVK------------EV- 404 (576)
T ss_dssp --CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCC-CHHHHHHHHH------------HC-
T ss_pred --cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccch-hHHHHHHHhh------------cc-
Confidence 2245689999999999999999999999999999999999999997643211 1111111100 00
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
....+...+.++.+++.+||+.||++||++
T Consensus 405 ---~~~~p~~~s~~~~dLI~~lL~~dP~~R~g~ 434 (576)
T 2acx_A 405 ---PEEYSERFSPQARSLCSQLLCKDPAERLGC 434 (576)
T ss_dssp ---CCCCCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred ---cccCCccCCHHHHHHHHHhccCCHHHcCCC
Confidence 011223456779999999999999999953
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-26 Score=230.94 Aligned_cols=185 Identities=21% Similarity=0.414 Sum_probs=137.5
Q ss_pred hhcCCCcccccccCCccEEEEEEec-CC-----cEEEEEEeeccc-hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCC
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIH-YG-----MEVAVKVFDLQY-REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDD 496 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~-----~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 496 (628)
..++|...+.||+|+||.||+|... ++ +.||+|++.... ....+.+.+|+++++++ +||||++++++|..++
T Consensus 44 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 123 (333)
T 2i1m_A 44 PRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGG 123 (333)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCC
Confidence 3577888999999999999999863 33 479999997543 34457789999999999 8999999999875432
Q ss_pred cc------------------------------------------------------------------------------
Q 037488 497 FK------------------------------------------------------------------------------ 498 (628)
Q Consensus 497 ~~------------------------------------------------------------------------------ 498 (628)
..
T Consensus 124 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~ 203 (333)
T 2i1m_A 124 PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVA 203 (333)
T ss_dssp SCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEGGGEE
T ss_pred ceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEECCCCeE
Confidence 10
Q ss_pred --ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHh
Q 037488 499 --ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVND 575 (628)
Q Consensus 499 --~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~ 575 (628)
+|||+|+...............||+.|+|||++.+..++.++|||||||++|||+| |+.||.+..... ........
T Consensus 204 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~-~~~~~~~~ 282 (333)
T 2i1m_A 204 KIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNS-KFYKLVKD 282 (333)
T ss_dssp EBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSH-HHHHHHHH
T ss_pred EECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhH-HHHHHHhc
Confidence 39999987644433333344568999999999999999999999999999999999 999997643221 11111111
Q ss_pred hcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 576 LLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. ....+..++.++.+++.+||+.||++|||+.||
T Consensus 283 ~~------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l 317 (333)
T 2i1m_A 283 GY------------------QMAQPAFAPKNIYSIMQACWALEPTHRPTFQQI 317 (333)
T ss_dssp TC------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CC------------------CCCCCCCCCHHHHHHHHHHhccChhhCcCHHHH
Confidence 10 011122345679999999999999999998763
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-26 Score=227.50 Aligned_cols=182 Identities=17% Similarity=0.306 Sum_probs=133.2
Q ss_pred hhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
..++|...+.||+|+||.||+|...++..||||+++.... ..+.+.+|++++++++||||++++++|.++...
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 100 (283)
T 3gen_A 22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY 100 (283)
T ss_dssp CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECC
T ss_pred CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEec
Confidence 3567888899999999999999988888999999975432 235688999999999999999999988654321
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++...... .....
T Consensus 101 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~-~~~~~ 179 (283)
T 3gen_A 101 MANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-YTSSV 179 (283)
T ss_dssp CTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH-HHSTT
T ss_pred cCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEccccccccccccc-ccccc
Confidence 3999998653321 11223
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...||+.|+|||++.+..++.++||||+||++|||+| |+.||...... ........ . ..
T Consensus 180 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~-----~~~~~~~~---------~------~~ 239 (283)
T 3gen_A 180 GSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS-----ETAEHIAQ---------G------LR 239 (283)
T ss_dssp STTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHH-----HHHHHHHT---------T------CC
T ss_pred CCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChh-----HHHHHHhc---------c------cC
Confidence 4457889999999998999999999999999999998 99999753211 11111000 0 00
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..++.++.+++.+||+.||++|||+.|+
T Consensus 240 ~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l 271 (283)
T 3gen_A 240 LYRPHLASEKVYTIMYSCWHEKADERPTFKIL 271 (283)
T ss_dssp CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHH
T ss_pred CCCCCcCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 11122345679999999999999999998763
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-26 Score=228.14 Aligned_cols=182 Identities=18% Similarity=0.242 Sum_probs=134.9
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc----hhHHHHHHHHHHHhhcccCCCcceeeeeccCCC--cc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY----REAFKNFDIECDMMKHIRHRNLIKIISSCSNDD--FK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~ 498 (628)
.++|...+.||+|+||.||+|.. .+++.||||+++... ....+.+.+|++++++++||||+++++++...+ ..
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 47899999999999999999997 578999999997542 234567899999999999999999999873221 10
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||+++......
T Consensus 84 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~ 163 (305)
T 2wtk_C 84 YMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFA 163 (305)
T ss_dssp EEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTC
T ss_pred EEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeeccccccccCccc
Confidence 3999998654332
Q ss_pred cccccccccccccccCccccccCc--cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccc
Q 037488 512 QSLIQTQTLATIGYMAPEYGREGR--VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (628)
.........||+.|+|||++.+.. ++.++||||+||++|||++|+.||.... .........
T Consensus 164 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~~~~~i~------------ 226 (305)
T 2wtk_C 164 ADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDN-----IYKLFENIG------------ 226 (305)
T ss_dssp SSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSS-----HHHHHHHHH------------
T ss_pred cccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHh------------
Confidence 222334557999999999987644 4889999999999999999999996521 111111100
Q ss_pred cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. ....+..++.++.+++.+||+.||++|||+.|+
T Consensus 227 ~~----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 261 (305)
T 2wtk_C 227 KG----SYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQI 261 (305)
T ss_dssp HC----CCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred cC----CCCCCCccCHHHHHHHHHHccCChhhCCCHHHH
Confidence 00 011223456679999999999999999998763
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-26 Score=232.70 Aligned_cols=184 Identities=21% Similarity=0.273 Sum_probs=133.1
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--------hhHHHHHHHHHHHhhcccCCCcceeeeeccCCC
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--------REAFKNFDIECDMMKHIRHRNLIKIISSCSNDD 496 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 496 (628)
.++|...+.||+|+||.||+|.. .+++.||||++.... ......+.+|++++++++||||+++++++..++
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 88 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED 88 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence 46789999999999999999987 568999999986432 122345889999999999999999999875543
Q ss_pred cc--------------------------------------------------------------------cccccccccc
Q 037488 497 FK--------------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 497 ~~--------------------------------------------------------------------~DFGla~~~~ 508 (628)
.. +|||+++...
T Consensus 89 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~ 168 (322)
T 2ycf_A 89 YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG 168 (322)
T ss_dssp EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEECC
T ss_pred eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCccceecc
Confidence 21 3899887653
Q ss_pred ccCcccccccccccccccCccccc---cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceee
Q 037488 509 KEDQSLIQTQTLATIGYMAPEYGR---EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVV 585 (628)
Q Consensus 509 ~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (628)
... ......||+.|+|||++. +..++.++||||+||++|||++|+.||....... .+......
T Consensus 169 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~---------- 234 (322)
T 2ycf_A 169 ETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQV-SLKDQITS---------- 234 (322)
T ss_dssp CCH---HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSS-CHHHHHHH----------
T ss_pred ccc---ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHH-HHHHHHHh----------
Confidence 221 123456999999999974 4678999999999999999999999997543322 22221111
Q ss_pred cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.........+..++.++.+++.+||+.||++|||+.|+
T Consensus 235 -----~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~ 272 (322)
T 2ycf_A 235 -----GKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEA 272 (322)
T ss_dssp -----TCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred -----CccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHH
Confidence 01111122233456779999999999999999998653
|
| >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-26 Score=237.88 Aligned_cols=131 Identities=20% Similarity=0.212 Sum_probs=106.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc------cCCCcceeeeeccCCCcc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI------RHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l~~~~~~~~~~ 498 (628)
..+|...+.||+|+||.||+|.. .+++.||||+++... ...+.+.+|+++++.+ +|+||+++++++..+...
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 174 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI 174 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence 45789999999999999999987 568999999997542 3345677888888887 567999999876532210
Q ss_pred ---------------------------------------------------------------------ccccccccccc
Q 037488 499 ---------------------------------------------------------------------ADFGMAKPLLK 509 (628)
Q Consensus 499 ---------------------------------------------------------------------~DFGla~~~~~ 509 (628)
+|||+|+....
T Consensus 175 ~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~ 254 (429)
T 3kvw_A 175 CMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQ 254 (429)
T ss_dssp EEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTCEETTC
T ss_pred EEEEeccCCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEeecccceecCC
Confidence 49999975432
Q ss_pred cCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcc
Q 037488 510 EDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEI 562 (628)
Q Consensus 510 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~ 562 (628)
. ..+.+||+.|+|||++.+..|+.++|||||||++|||+||++||...
T Consensus 255 ~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~ 302 (429)
T 3kvw_A 255 R-----VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE 302 (429)
T ss_dssp C-----CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred c-----ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence 2 23568999999999999999999999999999999999999999753
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-26 Score=229.72 Aligned_cols=187 Identities=20% Similarity=0.324 Sum_probs=138.8
Q ss_pred HHhhcCCCcccccccCCccEEEEEEe------cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcc-cCCCcceeeeeccC
Q 037488 423 FQATNGFSENNLIDRGGIGYVYKRRI------HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHI-RHRNLIKIISSCSN 494 (628)
Q Consensus 423 ~~~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 494 (628)
....++|...+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|+++++++ +||||++++++|..
T Consensus 23 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 102 (316)
T 2xir_A 23 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK 102 (316)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECC
T ss_pred ecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEec
Confidence 34567899999999999999999974 357899999997543 33456789999999999 79999999998653
Q ss_pred CCc---------------------------------------c-------------------------------------
Q 037488 495 DDF---------------------------------------K------------------------------------- 498 (628)
Q Consensus 495 ~~~---------------------------------------~------------------------------------- 498 (628)
.+. .
T Consensus 103 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~ 182 (316)
T 2xir_A 103 PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLS 182 (316)
T ss_dssp TTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC
T ss_pred CCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEEC
Confidence 210 0
Q ss_pred -------ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHH
Q 037488 499 -------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLK 570 (628)
Q Consensus 499 -------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~ 570 (628)
+|||+++...............||+.|+|||++.+..++.++||||+||++|||+| |+.||........ ..
T Consensus 183 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~-~~ 261 (316)
T 2xir_A 183 EKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE-FC 261 (316)
T ss_dssp GGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHH-HH
T ss_pred CCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHH-HH
Confidence 39999986644433333344568999999999999999999999999999999998 9999976432221 11
Q ss_pred HHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 571 HWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....... ....+..++.++.+++.+||+.||++|||+.|+
T Consensus 262 ~~~~~~~------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el 301 (316)
T 2xir_A 262 RRLKEGT------------------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSEL 301 (316)
T ss_dssp HHHHHTC------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHhccCc------------------cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 1111100 011222345679999999999999999998764
|
| >2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-26 Score=234.65 Aligned_cols=187 Identities=14% Similarity=0.122 Sum_probs=134.6
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~----- 498 (628)
.++|...+.||+|+||.||+|+. .+|+.||||++..... .+.+.+|+++++++ +||||+++++++..++..
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e 85 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE 85 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence 46789999999999999999986 6799999999875432 24578999999999 999999999876543211
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+|+.......
T Consensus 86 ~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~ 165 (330)
T 2izr_A 86 LLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPET 165 (330)
T ss_dssp CCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTT
T ss_pred eCCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCC
Confidence 49999987543321
Q ss_pred cc-----ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecc
Q 037488 513 SL-----IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587 (628)
Q Consensus 513 ~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (628)
.. .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+..... ......... ..
T Consensus 166 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~--~~~~~~~i~--------~~ 235 (330)
T 2izr_A 166 KKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADT--LKERYQKIG--------DT 235 (330)
T ss_dssp CCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSS--HHHHHHHHH--------HH
T ss_pred CccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCcccccccc--HHHHHHHHH--------hh
Confidence 11 1245679999999999999999999999999999999999999998643222 111111100 00
Q ss_pred cccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..... .......++ ++.+++.+||+.||++||++++|
T Consensus 236 ~~~~~---~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l 272 (330)
T 2izr_A 236 KRATP---IEVLCENFP-EMATYLRYVRRLDFFEKPDYDYL 272 (330)
T ss_dssp HHHSC---HHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHH
T ss_pred hccCC---HHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHH
Confidence 00000 000111234 79999999999999999998653
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-26 Score=234.54 Aligned_cols=207 Identities=18% Similarity=0.173 Sum_probs=135.2
Q ss_pred hhHHHHHhhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccc-----------hhHHHHHHHHHHHhhcccCCCcc
Q 037488 418 TYLELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY-----------REAFKNFDIECDMMKHIRHRNLI 486 (628)
Q Consensus 418 ~~~~l~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~-----------~~~~~~~~~E~~~l~~l~h~niv 486 (628)
...++....++|...+.||+|+||.||+|....|+.||||++.... ....+.+.+|++++++++||||+
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 3456777889999999999999999999998779999999985421 12246789999999999999999
Q ss_pred eeeeeccCCC-----cc---------------------------------------------------------------
Q 037488 487 KIISSCSNDD-----FK--------------------------------------------------------------- 498 (628)
Q Consensus 487 ~l~~~~~~~~-----~~--------------------------------------------------------------- 498 (628)
++++++...+ ..
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~ 172 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNND 172 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCC
T ss_pred ceeeeEEeccCCCcceEEEEEccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCC
Confidence 9999873211 00
Q ss_pred ---ccccccccccccCcccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHH
Q 037488 499 ---ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVN 574 (628)
Q Consensus 499 ---~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~ 574 (628)
+|||+|+...... ......||++|+|||++.+ ..++.++||||+||++|||++|+.||....... .......
T Consensus 173 ~kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~i~~ 248 (362)
T 3pg1_A 173 ITICDFNLAREDTADA---NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYN-QLNKIVE 248 (362)
T ss_dssp EEECCTTC------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHH
T ss_pred EEEEecCccccccccc---ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHH-HHHHHHH
Confidence 3999998543322 2244679999999999887 679999999999999999999999997532111 1111111
Q ss_pred hhcCCccc-----------eeecccccCC-cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 575 DLLPISVM-----------KVVDAHLLSQ-EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 575 ~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
........ .......... ...........++.+.+++.+||+.||++|||+.|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el 314 (362)
T 3pg1_A 249 VVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQA 314 (362)
T ss_dssp HHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHH
Confidence 11000000 0000000000 000111223456779999999999999999998753
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-26 Score=239.27 Aligned_cols=192 Identities=20% Similarity=0.268 Sum_probs=137.5
Q ss_pred hhHHHHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeecc
Q 037488 418 TYLELFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCS 493 (628)
Q Consensus 418 ~~~~l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 493 (628)
.+.+.....++|...+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|..++..++|||||++++++.
T Consensus 52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 131 (412)
T 2vd5_A 52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ 131 (412)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence 4445556678999999999999999999987 579999999997532 223455889999999999999999998876
Q ss_pred CCCcc-------------------------------------------------------------------cccccccc
Q 037488 494 NDDFK-------------------------------------------------------------------ADFGMAKP 506 (628)
Q Consensus 494 ~~~~~-------------------------------------------------------------------~DFGla~~ 506 (628)
+++.. +|||+|+.
T Consensus 132 ~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~~ 211 (412)
T 2vd5_A 132 DENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLK 211 (412)
T ss_dssp CSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred eCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhhee
Confidence 54321 49999987
Q ss_pred ccccCcccccccccccccccCccccc-------cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC
Q 037488 507 LLKEDQSLIQTQTLATIGYMAPEYGR-------EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI 579 (628)
Q Consensus 507 ~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~ 579 (628)
...... ......+||+.|||||++. ++.|+.++||||+||++|||++|++||......+ .........
T Consensus 212 ~~~~~~-~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~-~~~~i~~~~--- 286 (412)
T 2vd5_A 212 LRADGT-VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAE-TYGKIVHYK--- 286 (412)
T ss_dssp CCTTSC-EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHTHH---
T ss_pred ccCCCc-cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHH-HHHHHHhcc---
Confidence 644322 1223468999999999987 4579999999999999999999999996532111 111111000
Q ss_pred ccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCC---CCCC
Q 037488 580 SVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERV---NAKE 627 (628)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp---t~~e 627 (628)
... . .+..+..++.++++++.+||. +|++|+ +++|
T Consensus 287 -------~~~--~---~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~e 324 (412)
T 2vd5_A 287 -------EHL--S---LPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGD 324 (412)
T ss_dssp -------HHC--C---CC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHH
T ss_pred -------cCc--C---CCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHH
Confidence 000 0 001122456779999999999 999985 5543
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-26 Score=245.42 Aligned_cols=175 Identities=19% Similarity=0.237 Sum_probs=123.9
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|...+.||+|+||.||+|+. .+|+.||||+++.. .......+.+|+++++.++||||++++++|..++..
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 46789999999999999999987 67999999999753 233446678999999999999999999987543311
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+|+...... .
T Consensus 227 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~--~ 304 (446)
T 4ejn_A 227 MEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDG--A 304 (446)
T ss_dssp ECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-----
T ss_pred EeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCCceeccCCC--c
Confidence 4999998643322 2
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
.....+||++|||||++.+..|+.++||||+||++|||++|+.||..... ....... ....
T Consensus 305 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~~i------------~~~~-- 365 (446)
T 4ejn_A 305 TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----EKLFELI------------LMEE-- 365 (446)
T ss_dssp --CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHH------------HHCC--
T ss_pred ccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH-----HHHHHHH------------HhCC--
Confidence 23456899999999999999999999999999999999999999965321 1111110 0000
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERV 623 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp 623 (628)
...+...+.++.+++.+||+.||++||
T Consensus 366 --~~~p~~~~~~~~~li~~~L~~dP~~R~ 392 (446)
T 4ejn_A 366 --IRFPRTLGPEAKSLLSGLLKKDPKQRL 392 (446)
T ss_dssp --CCCCTTSCHHHHHHHHHHTCSSTTTST
T ss_pred --CCCCccCCHHHHHHHHHHcccCHHHhC
Confidence 112234566799999999999999999
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-26 Score=231.52 Aligned_cols=192 Identities=18% Similarity=0.179 Sum_probs=136.1
Q ss_pred hhhHHHHHhhcCCCcc-cccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcc-cCCCcceeeee
Q 037488 417 LTYLELFQATNGFSEN-NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHI-RHRNLIKIISS 491 (628)
Q Consensus 417 ~~~~~l~~~~~~~~~~-~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~l~~~ 491 (628)
+.+.....-.+.|... +.||+|+||.||+|.. .+|+.||||+++... ......+.+|+.+++.+ +||||++++++
T Consensus 18 ~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~ 97 (327)
T 3lm5_A 18 LYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEV 97 (327)
T ss_dssp CCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEE
T ss_pred hHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEE
Confidence 3334444455667766 7899999999999987 579999999997543 22356788999999999 56999999998
Q ss_pred ccCCCcc-----------------------------------------------------------------------cc
Q 037488 492 CSNDDFK-----------------------------------------------------------------------AD 500 (628)
Q Consensus 492 ~~~~~~~-----------------------------------------------------------------------~D 500 (628)
+..+... +|
T Consensus 98 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~D 177 (327)
T 3lm5_A 98 YENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVD 177 (327)
T ss_dssp EECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECC
T ss_pred EEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEee
Confidence 7543211 39
Q ss_pred ccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc
Q 037488 501 FGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS 580 (628)
Q Consensus 501 FGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~ 580 (628)
||+|+...... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||....... ........
T Consensus 178 fg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~----- 248 (327)
T 3lm5_A 178 FGMSRKIGHAC---ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQE-TYLNISQV----- 248 (327)
T ss_dssp GGGCEEC------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHT-----
T ss_pred CccccccCCcc---ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchH-HHHHHHhc-----
Confidence 99998654332 1234579999999999999999999999999999999999999996532111 01111000
Q ss_pred cceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 581 VMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
........+..++.++.+++.+||+.||++|||+.|+
T Consensus 249 -----------~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~l 285 (327)
T 3lm5_A 249 -----------NVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEIC 285 (327)
T ss_dssp -----------CCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred -----------ccccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 0111112223456779999999999999999998753
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.8e-26 Score=227.54 Aligned_cols=184 Identities=22% Similarity=0.262 Sum_probs=124.1
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|...+.||+|+||.||+|.. .+|+.||||++... .......+.+|++++++++||||+++++++..++..
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 35788999999999999999987 67999999999742 344567789999999999999999999887543211
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||+++......
T Consensus 111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~ 190 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT 190 (310)
T ss_dssp EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC----------
T ss_pred EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCC
Confidence 3999988653322
Q ss_pred cccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 512 QSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
.......||+.|+|||++.+..++.++|||||||++|||++|+.||...... ...+.........
T Consensus 191 --~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~---------- 255 (310)
T 2wqm_A 191 --TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN---LYSLCKKIEQCDY---------- 255 (310)
T ss_dssp ----------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CC---HHHHHHHHHTTCS----------
T ss_pred --ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchh---HHHHHHHhhcccC----------
Confidence 1123457999999999999999999999999999999999999999653221 1111111100000
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++.+++.+||+.||++|||+.||
T Consensus 256 ----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~i 288 (310)
T 2wqm_A 256 ----PPLPSDHYSEELRQLVNMCINPDPEKRPDVTYV 288 (310)
T ss_dssp ----CCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ----CCCcccccCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 001112356679999999999999999998763
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-26 Score=224.14 Aligned_cols=183 Identities=22% Similarity=0.323 Sum_probs=133.9
Q ss_pred hhcCCCcccccccCCccEEEEEEec----CCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIH----YGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
..++|...+.||+|+||.||+|... .+..||||++... .....+.+.+|++++++++||||+++++++.++...
T Consensus 10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 89 (281)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTWI 89 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSSSCEE
T ss_pred cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCEE
Confidence 3567888999999999999999853 2456999999754 334567799999999999999999999987654321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+++.......
T Consensus 90 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~- 168 (281)
T 3cc6_A 90 IMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDY- 168 (281)
T ss_dssp EEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC------
T ss_pred EEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCccCCCcccccccc-
Confidence 39999986543321
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.......||+.|+|||++.+..++.++||||+||++|||+| |+.||...... .........
T Consensus 169 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~--~~~~~~~~~---------------- 230 (281)
T 3cc6_A 169 YKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENK--DVIGVLEKG---------------- 230 (281)
T ss_dssp ----CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGG--GHHHHHHHT----------------
T ss_pred cccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChH--HHHHHHhcC----------------
Confidence 12234468899999999998999999999999999999998 99999653221 111111110
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.|+
T Consensus 231 --~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~el 264 (281)
T 3cc6_A 231 --DRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTEL 264 (281)
T ss_dssp --CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred --CCCCCCCCCCHHHHHHHHHHccCCchhCcCHHHH
Confidence 0011223356679999999999999999998763
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-26 Score=231.30 Aligned_cols=202 Identities=20% Similarity=0.253 Sum_probs=135.2
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
.++|...+.||+|+||.||+|+. .+|+.||||++.... ......+.+|+++++.++||||+++++++.....
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 46788999999999999999997 679999999986432 2234567899999999999999999998754210
Q ss_pred ---c------------------------------------------------------------------cccccccccc
Q 037488 498 ---K------------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 498 ---~------------------------------------------------------------------~DFGla~~~~ 508 (628)
. +|||+|+...
T Consensus 96 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~ 175 (351)
T 3mi9_A 96 KGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFS 175 (351)
T ss_dssp -CEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred CceEEEEEeccCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEccchhccccc
Confidence 0 3999998654
Q ss_pred ccC--cccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhh--cCCcc-c
Q 037488 509 KED--QSLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDL--LPISV-M 582 (628)
Q Consensus 509 ~~~--~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~--~~~~~-~ 582 (628)
... ........+||++|+|||++.+ ..|+.++||||+||++|||+||++||.+..... ......... .+... .
T Consensus 176 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~ 254 (351)
T 3mi9_A 176 LAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQH-QLALISQLCGSITPEVWP 254 (351)
T ss_dssp CCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTST
T ss_pred ccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCChhhcc
Confidence 221 1122345679999999999876 458999999999999999999999997632211 111111111 11110 0
Q ss_pred eeecccccCCc----ccchhch-----hhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 583 KVVDAHLLSQE----DKHFVIK-----GQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 583 ~~~~~~~~~~~----~~~~~~~-----~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..-........ ....... ...++++.+|+.+||+.||++|||+.|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~ 309 (351)
T 3mi9_A 255 NVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDA 309 (351)
T ss_dssp TGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred ccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHH
Confidence 00000000000 0000000 0124568999999999999999998763
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-24 Score=208.45 Aligned_cols=202 Identities=28% Similarity=0.374 Sum_probs=153.1
Q ss_pred CCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCc
Q 037488 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLK 113 (628)
Q Consensus 34 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~ 113 (628)
+.+.+++++|.++. +|..+. ++|+.|+|++|+++++.+.+|.++++|++|++++|.++.+++. .|.++++|+
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~-----~~~~l~~L~ 88 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG-----IFKELKNLE 88 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT-----TTSSCTTCC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh-----hhcCCCCCC
Confidence 46778888888874 454443 6789999999999988888899999999999999998877543 367788899
Q ss_pred EEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccC
Q 037488 114 YFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYN 193 (628)
Q Consensus 114 ~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 193 (628)
+|++++|.++++.+ ..|..+++|+.|++++|++++..+..|..+++|++|+|++|
T Consensus 89 ~L~l~~n~l~~~~~-------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 89 TLWVTDNKLQALPI-------------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp EEECCSSCCCCCCT-------------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCcCCH-------------------------hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 99988888775433 33455667777777777777666666777777888888887
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCC-ccCCCCCcEEEcCCCCCcC
Q 037488 194 QLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPST-LLNLKDILYLNLSSNFFTG 268 (628)
Q Consensus 194 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~ 268 (628)
++.+..+..|..+++|++|++++|++++..+..|..+++|+.|++++|+++.+|.. +..+++|++|++++|.+..
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 77766555677777888888888887776666777788888888888888777654 5567788888888887654
|
| >3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-26 Score=233.30 Aligned_cols=141 Identities=23% Similarity=0.239 Sum_probs=112.8
Q ss_pred cchhhHHHHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhccc-----CCCccee
Q 037488 415 RRLTYLELFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIR-----HRNLIKI 488 (628)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~l 488 (628)
..+++.+.....++|...+.||+|+||.||+|+. .+++.||||+++.. ....+.+.+|+++++.++ |||||++
T Consensus 23 ~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~ 101 (360)
T 3llt_A 23 VHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKY 101 (360)
T ss_dssp GSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCE
T ss_pred eeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeecc
Confidence 3445555556678999999999999999999987 67999999999743 234456788999999986 9999999
Q ss_pred eeeccCCCc-----------------------------------------------------------------------
Q 037488 489 ISSCSNDDF----------------------------------------------------------------------- 497 (628)
Q Consensus 489 ~~~~~~~~~----------------------------------------------------------------------- 497 (628)
++++...+.
T Consensus 102 ~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~ 181 (360)
T 3llt_A 102 HGKFMYYDHMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLIT 181 (360)
T ss_dssp EEEEEETTEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEEEEE
T ss_pred cceeeECCeeEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccccccccccc
Confidence 987643211
Q ss_pred ---------------------cccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCC
Q 037488 498 ---------------------KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRK 556 (628)
Q Consensus 498 ---------------------~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~ 556 (628)
.+|||+|+..... ....+||+.|+|||++.+..|+.++||||+||++|||++|+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~ 256 (360)
T 3llt_A 182 VRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY-----HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGS 256 (360)
T ss_dssp EECTTTCCEEEEEEESCCCEEECCCTTCEETTSC-----CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSS
T ss_pred hhcccccccccccccCCCCEEEEeccCceecCCC-----CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCC
Confidence 1378877753221 23467999999999999999999999999999999999999
Q ss_pred CCCCc
Q 037488 557 KPTDE 561 (628)
Q Consensus 557 ~p~~~ 561 (628)
.||..
T Consensus 257 ~pf~~ 261 (360)
T 3llt_A 257 LLFRT 261 (360)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 99975
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-25 Score=224.03 Aligned_cols=183 Identities=19% Similarity=0.352 Sum_probs=135.1
Q ss_pred hcCCCccc-ccccCCccEEEEEEe---cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 426 TNGFSENN-LIDRGGIGYVYKRRI---HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 426 ~~~~~~~~-~ig~G~~g~V~~~~~---~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
.++|...+ .||+|+||.||+|.. .+++.||||+++.. .....+.+.+|++++++++||||+++++++..+...
T Consensus 8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv 87 (287)
T 1u59_A 8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLV 87 (287)
T ss_dssp GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEE
T ss_pred HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecCCCcEEE
Confidence 34555555 899999999999975 35888999999764 344567789999999999999999999987543211
Q ss_pred ----------------------------------------------------------------ccccccccccccCcc-
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQS- 513 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~- 513 (628)
+|||+++........
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~ 167 (287)
T 1u59_A 88 MEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYY 167 (287)
T ss_dssp EECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEE
T ss_pred EEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECcccceeeeccCccee
Confidence 399999876433221
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.......||+.|+|||++.+..++.++||||+||++|||+| |+.||...... .........
T Consensus 168 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~i~~~---------------- 229 (287)
T 1u59_A 168 TARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQG---------------- 229 (287)
T ss_dssp CCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH--HHHHHHHTT----------------
T ss_pred eccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHhcC----------------
Confidence 11233457899999999998899999999999999999999 99999753221 111111100
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.|+
T Consensus 230 --~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l 263 (287)
T 1u59_A 230 --KRMECPPECPPELYALMSDCWIYKWEDRPDFLTV 263 (287)
T ss_dssp --CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHH
T ss_pred --CcCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 0112233566789999999999999999998763
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-26 Score=232.03 Aligned_cols=197 Identities=21% Similarity=0.282 Sum_probs=139.2
Q ss_pred hcCCCcccccccCCccEEEEEEe-----cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc--c
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-----HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--K 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--~ 498 (628)
.++|...+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++...+. .
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 101 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL 101 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence 46788889999999999999983 4689999999987666667789999999999999999999997753211 0
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||+++......
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~ 181 (327)
T 3lxl_A 102 RLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDK 181 (327)
T ss_dssp EEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCGGGCEECCTTC
T ss_pred EEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEcccccceecccCC
Confidence 3999998754332
Q ss_pred cc-cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC-ccceeecccc
Q 037488 512 QS-LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI-SVMKVVDAHL 589 (628)
Q Consensus 512 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 589 (628)
.. .......||..|+|||++.+..++.++||||+||++|||++|+.||...... ........... ......+...
T Consensus 182 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 258 (327)
T 3lxl_A 182 DYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAE---FLRMMGCERDVPALSRLLELLE 258 (327)
T ss_dssp SEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHH---HHHHCC----CCHHHHHHHHHH
T ss_pred ccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccch---hhhhcccccccccHHHHHHHhh
Confidence 21 1223456899999999999999999999999999999999999998642110 00000000000 0000000000
Q ss_pred cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+..++.++.+++.+||+.||++|||+.|+
T Consensus 259 ---~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~el 294 (327)
T 3lxl_A 259 ---EGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSAL 294 (327)
T ss_dssp ---TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ---cccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHH
Confidence 001122344567889999999999999999998763
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-26 Score=227.14 Aligned_cols=181 Identities=23% Similarity=0.315 Sum_probs=136.9
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.+.|...+.||+|+||.||+|.. .+++.||||+++... ....+.+.+|+.++++++||||+++++++..+...
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 45688889999999999999986 679999999997543 33457789999999999999999999987543211
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+++...... .....
T Consensus 101 ~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~ 178 (303)
T 3a7i_A 101 YLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ--IKRNT 178 (303)
T ss_dssp CCTTEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTB--CCBCC
T ss_pred eCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccceecCccc--cccCc
Confidence 3999998654332 12245
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
..||+.|+|||++.+..++.++|||||||++|||++|+.||...... .......... ...
T Consensus 179 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~------------------~~~ 238 (303)
T 3a7i_A 179 FVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM--KVLFLIPKNN------------------PPT 238 (303)
T ss_dssp CCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHSC------------------CCC
T ss_pred cCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH--HHHHHhhcCC------------------CCC
Confidence 67999999999999999999999999999999999999999653211 1111110000 011
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+..++.++.+++.+||+.||++|||+.|+
T Consensus 239 ~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 268 (303)
T 3a7i_A 239 LEGNYSKPLKEFVEACLNKEPSFRPTAKEL 268 (303)
T ss_dssp CCSSCCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred CccccCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 222345679999999999999999998763
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-26 Score=228.27 Aligned_cols=184 Identities=21% Similarity=0.311 Sum_probs=131.3
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
..+.|+..+.||+|+||.||+|+. .+|+.||+|++........+.+.+|++++++++||||+++++++..++..
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 96 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE 96 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence 457788999999999999999998 56999999999766555567889999999999999999999987654311
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++...... ...
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~ 174 (302)
T 2j7t_A 97 FCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTL--QKR 174 (302)
T ss_dssp CCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHH--HC-
T ss_pred eCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCccccccc--ccc
Confidence 3888876432211 112
Q ss_pred ccccccccccCcccc-----ccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 517 TQTLATIGYMAPEYG-----REGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~-----~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
....||+.|+|||++ .+..++.++||||+||++|||++|+.||....... ........
T Consensus 175 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~~---------------- 237 (302)
T 2j7t_A 175 DSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR-VLLKIAKS---------------- 237 (302)
T ss_dssp ----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHS----------------
T ss_pred ccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHH-HHHHHhcc----------------
Confidence 345799999999998 35678999999999999999999999997532111 01111100
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ......+..++.++.+++.+||+.||++|||+.|+
T Consensus 238 ~-~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 273 (302)
T 2j7t_A 238 D-PPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQL 273 (302)
T ss_dssp C-CCCCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred C-CcccCCccccCHHHHHHHHHHcccChhhCCCHHHH
Confidence 0 00011233456779999999999999999998653
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=224.50 Aligned_cols=184 Identities=20% Similarity=0.234 Sum_probs=135.6
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---------hhHHHHHHHHHHHhhccc-CCCcceeeeecc
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---------REAFKNFDIECDMMKHIR-HRNLIKIISSCS 493 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---------~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~ 493 (628)
..++|...+.||+|+||.||+|.. .+|+.||||+++... ....+.+.+|++++++++ ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 357889999999999999999987 578999999997532 223467889999999996 999999999886
Q ss_pred CCCcc------------------------------------------------------------------ccccccccc
Q 037488 494 NDDFK------------------------------------------------------------------ADFGMAKPL 507 (628)
Q Consensus 494 ~~~~~------------------------------------------------------------------~DFGla~~~ 507 (628)
.+... +|||+++..
T Consensus 95 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~ 174 (298)
T 1phk_A 95 TNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQL 174 (298)
T ss_dssp CSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred cCCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEEecccchhhc
Confidence 54321 399999865
Q ss_pred cccCcccccccccccccccCccccc------cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcc
Q 037488 508 LKEDQSLIQTQTLATIGYMAPEYGR------EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISV 581 (628)
Q Consensus 508 ~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 581 (628)
.... ......||+.|+|||++. ...++.++||||+||++|||++|+.||..... .........
T Consensus 175 ~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~~~~~~~------ 243 (298)
T 1phk_A 175 DPGE---KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ--MLMLRMIMS------ 243 (298)
T ss_dssp CTTC---CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHH------
T ss_pred CCCc---ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccH--HHHHHHHhc------
Confidence 4332 224457999999999985 45689999999999999999999999965321 111111100
Q ss_pred ceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 582 MKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.........+..++.++.+++.+||+.||++|||+.|+
T Consensus 244 ---------~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 281 (298)
T 1phk_A 244 ---------GNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEA 281 (298)
T ss_dssp ---------TCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred ---------CCcccCcccccccCHHHHHHHHHHccCCcccCCCHHHH
Confidence 00111111223456779999999999999999998653
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-26 Score=224.25 Aligned_cols=178 Identities=18% Similarity=0.224 Sum_probs=135.0
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|...+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++||||+++++++.+++..
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 92 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM 92 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence 36788899999999999999987 568899999996532 22246788999999999999999999988654321
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||++...... .
T Consensus 93 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~----~ 168 (284)
T 2vgo_A 93 LEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL----R 168 (284)
T ss_dssp ECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSS----C
T ss_pred EEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEecccccccCccc----c
Confidence 399988754322 1
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
.....||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......... .
T Consensus 169 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~~~~------------~---- 227 (284)
T 2vgo_A 169 RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSH-----TETHRRIVN------------V---- 227 (284)
T ss_dssp BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHHT------------T----
T ss_pred cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCH-----hHHHHHHhc------------c----
Confidence 2345799999999999999999999999999999999999999965321 111111000 0
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+...+.++.+++.+||+.||++|||+.|+
T Consensus 228 ~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l 260 (284)
T 2vgo_A 228 DLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGV 260 (284)
T ss_dssp CCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred ccCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHH
Confidence 011223345679999999999999999998753
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-26 Score=246.74 Aligned_cols=182 Identities=24% Similarity=0.361 Sum_probs=137.6
Q ss_pred hhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
..++|...+.||+|+||.||+|.+..++.||||+++.... ..+.|.+|++++++++|||||+++++|.++...
T Consensus 265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~lv~e~~ 343 (535)
T 2h8h_A 265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYM 343 (535)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCC
T ss_pred chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEeeccceEeeehh
Confidence 3456788899999999999999997778899999975432 346789999999999999999999988653221
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++...... .....
T Consensus 344 ~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~~ 422 (535)
T 2h8h_A 344 SKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-YTARQ 422 (535)
T ss_dssp TTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHH-HHTTC
T ss_pred cCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCc-eeccc
Confidence 4999998654321 11123
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...+|..|+|||++.++.|+.++|||||||++|||+| |+.||.+.... .....+.. ..+
T Consensus 423 ~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~--~~~~~i~~------------------~~~ 482 (535)
T 2h8h_A 423 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR--EVLDQVER------------------GYR 482 (535)
T ss_dssp STTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHH--HHHHHHHT------------------TCC
T ss_pred CCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHc------------------CCC
Confidence 3457899999999999999999999999999999999 99999753211 11111100 011
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..++.++.++|.+||+.||++|||+.+|
T Consensus 483 ~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l 514 (535)
T 2h8h_A 483 MPCPPECPESLHDLMCQCWRKEPEERPTFEYL 514 (535)
T ss_dssp CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 12234567789999999999999999998753
|
| >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.3e-26 Score=231.80 Aligned_cols=203 Identities=23% Similarity=0.206 Sum_probs=136.5
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
..++|...+.||+|+||.||+|+. .+|+.||||++... .......+.+|++++++++||||+++++++..+..
T Consensus 9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 88 (353)
T 2b9h_A 9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNE 88 (353)
T ss_dssp SCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCC
T ss_pred cccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccce
Confidence 357899999999999999999987 57999999999653 33445678899999999999999999998764310
Q ss_pred c----------------------------------------------------------------ccccccccccccCcc
Q 037488 498 K----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 498 ~----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
. +|||+|+........
T Consensus 89 ~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~ 168 (353)
T 2b9h_A 89 VYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAAD 168 (353)
T ss_dssp EEEEECCCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECC-----
T ss_pred EEEEEeccCccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEeccccccccccccc
Confidence 0 399999865432111
Q ss_pred --------cccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhc-CC--cc
Q 037488 514 --------LIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL-PI--SV 581 (628)
Q Consensus 514 --------~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~-~~--~~ 581 (628)
......+||+.|+|||++.+ ..++.++||||+||++|||++|++||....... .......... +. ..
T Consensus 169 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~ 247 (353)
T 2b9h_A 169 NSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRH-QLLLIFGIIGTPHSDND 247 (353)
T ss_dssp -----------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCSTTT
T ss_pred ccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHhCCCchhcc
Confidence 01223579999999998764 679999999999999999999999997532111 1111111100 00 00
Q ss_pred -ceeecc-------ccc-CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 582 -MKVVDA-------HLL-SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 582 -~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...... ... .........+..++.++.+++.+||+.||++|||+.|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el 303 (353)
T 2b9h_A 248 LRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEA 303 (353)
T ss_dssp TTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred ccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHH
Confidence 000000 000 00000111223567789999999999999999998763
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=224.14 Aligned_cols=183 Identities=20% Similarity=0.201 Sum_probs=121.7
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
..++|+..+.||+|+||.||+|+. .+|+.||||+++... ....+.+.++...++.++||||+++++++..++..
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 84 (290)
T 3fme_A 5 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 84 (290)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEE
T ss_pred cHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEE
Confidence 356789999999999999999987 679999999997542 22334455566668889999999999987654311
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||+|+......
T Consensus 85 ~e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 164 (290)
T 3fme_A 85 MELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDV 164 (290)
T ss_dssp EECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC----------
T ss_pred EehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecCCcccccccc
Confidence 3999887654332
Q ss_pred cccccccccccccccCcccc----ccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecc
Q 037488 512 QSLIQTQTLATIGYMAPEYG----REGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (628)
......||+.|+|||++ .+..++.++||||+||++|||+||+.||..................
T Consensus 165 ---~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~---------- 231 (290)
T 3fme_A 165 ---AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPS---------- 231 (290)
T ss_dssp --------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCC----------
T ss_pred ---cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCC----------
Confidence 12334799999999996 5567899999999999999999999999653221111111111100
Q ss_pred cccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++.+++.+||+.||++|||+.|+
T Consensus 232 --------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~ 264 (290)
T 3fme_A 232 --------PQLPADKFSAEFVDFTSQCLKKNSKERPTYPEL 264 (290)
T ss_dssp --------CCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred --------CCcccccCCHHHHHHHHHHhhcChhhCcCHHHH
Confidence 001112346679999999999999999998763
|
| >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-26 Score=228.17 Aligned_cols=201 Identities=16% Similarity=0.203 Sum_probs=132.6
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCC---------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSND--------- 495 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--------- 495 (628)
.++|...+.||+|+||.||+|.. .+|+.||||++........+.+.+|++++++++||||+++++++...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 46789999999999999999997 46999999999876666678899999999999999999999876321
Q ss_pred -----Cc-----------------------------------------------------------------cccccccc
Q 037488 496 -----DF-----------------------------------------------------------------KADFGMAK 505 (628)
Q Consensus 496 -----~~-----------------------------------------------------------------~~DFGla~ 505 (628)
.. .+|||+++
T Consensus 90 ~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~ 169 (320)
T 2i6l_A 90 SLTELNSVYIVQEYMETDLANVLEQGPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLAR 169 (320)
T ss_dssp -CCSCSEEEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEECCCTTCB
T ss_pred cccccCceeEEeeccCCCHHHHhhcCCccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEEccCcccc
Confidence 00 03999998
Q ss_pred cccccCc-ccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccce
Q 037488 506 PLLKEDQ-SLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMK 583 (628)
Q Consensus 506 ~~~~~~~-~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (628)
....... ........||.+|+|||++.+ ..++.++|||||||++|||++|+.||....... ...... ...+.....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-~~~~~~-~~~~~~~~~ 247 (320)
T 2i6l_A 170 IMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELE-QMQLIL-ESIPVVHEE 247 (320)
T ss_dssp CC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHH-HHSCCCCHH
T ss_pred ccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHH-HHHHHH-HhcCCCchh
Confidence 6532211 112234568999999998865 679999999999999999999999997532211 111111 111110000
Q ss_pred -----------eecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 584 -----------VVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 584 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
................+..++.++.+++.+||+.||++|||+.|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el 303 (320)
T 2i6l_A 248 DRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEA 303 (320)
T ss_dssp HHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred hhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHH
Confidence 000000000000111223467789999999999999999998763
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-26 Score=248.97 Aligned_cols=175 Identities=19% Similarity=0.376 Sum_probs=127.7
Q ss_pred ccccCCccEEEEEEec---CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----------
Q 037488 434 LIDRGGIGYVYKRRIH---YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----------- 498 (628)
Q Consensus 434 ~ig~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----------- 498 (628)
.||+|+||.||+|.+. ++..||||+++... ....+.|.+|++++++++|||||+++++|..+...
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~lv~E~~~~g~L 422 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPL 422 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEESSSEEEEEECCTTCBH
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEeccCCeEEEEEeCCCCcH
Confidence 7999999999999763 46789999997643 33567899999999999999999999998653311
Q ss_pred -------------------------------------------------------ccccccccccccCcc-ccccccccc
Q 037488 499 -------------------------------------------------------ADFGMAKPLLKEDQS-LIQTQTLAT 522 (628)
Q Consensus 499 -------------------------------------------------------~DFGla~~~~~~~~~-~~~~~~~gt 522 (628)
+|||+|+........ .......+|
T Consensus 423 ~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~ 502 (613)
T 2ozo_A 423 HKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWP 502 (613)
T ss_dssp HHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------------C
T ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCc
Confidence 499999876433211 111233467
Q ss_pred ccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchh
Q 037488 523 IGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKG 601 (628)
Q Consensus 523 ~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (628)
+.|+|||++.++.|+.++|||||||++|||+| |+.||...... .....+.. ......+.
T Consensus 503 ~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i~~------------------~~~~~~p~ 562 (613)
T 2ozo_A 503 LKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQ------------------GKRMECPP 562 (613)
T ss_dssp CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSH--HHHHHHHT------------------TCCCCCCT
T ss_pred cceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHc------------------CCCCCCCC
Confidence 89999999999999999999999999999998 99999764321 11111110 01122344
Q ss_pred hhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 602 QCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 602 ~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.++.++.++|.+||+.||++|||+.+|
T Consensus 563 ~~~~~l~~li~~cl~~dP~~RPs~~~l 589 (613)
T 2ozo_A 563 ECPPELYALMSDCWIYKWEDRPDFLTV 589 (613)
T ss_dssp TCCHHHHHHHHHTTCSSTTTSCCHHHH
T ss_pred cCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 577889999999999999999998763
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-27 Score=262.19 Aligned_cols=341 Identities=17% Similarity=0.155 Sum_probs=181.3
Q ss_pred CCCCCCEEecCccCC------------CC-CCEEEccCCcc-ee-cCCccccCCCCCCEEeccCCccccc----CccccC
Q 037488 18 NVSTLNSLYLQNVQL------------QN-LEELLLWGNNF-SG-TIPSFIFNASKLSRLELQMNSFYGF----IPNTFG 78 (628)
Q Consensus 18 ~l~~L~~L~l~~n~l------------~~-L~~L~ls~N~l-~~-~~p~~~~~l~~L~~L~L~~N~l~~~----~~~~f~ 78 (628)
++++|++|+|++|.+ ++ |++|+|++|.. +. .++....++++|++|+|++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 788999999988853 24 99999988872 21 1223334788999999999987665 233456
Q ss_pred CCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCccc---ccCCccc
Q 037488 79 NLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNIS---GGIPEEI 155 (628)
Q Consensus 79 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~---~~~~~~~ 155 (628)
++++|+.|++++|.++..... .....+.++++|++|++++|.+.+ +|..+..++ .|+.+.++.+... ...+..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPK-DLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA-NLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHH-HHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT-TCCEEEECBCCCCTTCTTSSSCC
T ss_pred cCCCccEEEeeccCCCccCHH-HHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh-HHHhhcccccccccchHHHHHHh
Confidence 788899999999888643211 112234578889999999988875 556676664 6777777643222 1222344
Q ss_pred cCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCC-ccccCCCCCCEEEccCCcCcc-cCCCCccC----
Q 037488 156 SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIP-DDLCRLAALFQLDLGSNKLSG-FVPASFGN---- 229 (628)
Q Consensus 156 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~---- 229 (628)
..+++|+.|+++++.. ..+|..+..+++|++|+|++|.+.+... ..+..+++|+.|+++ +.+.. ..+..+..
T Consensus 267 ~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred hccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence 4555555555555432 2344445555555555555555432211 123444555555554 22211 11122233
Q ss_pred --------------------------------CCCCcEEEccCCcCCc-CCCCccC-CCCCcEEEcC----CCCCcCC--
Q 037488 230 --------------------------------LTNLRSLHLGSNQITS-IPSTLLN-LKDILYLNLS----SNFFTGP-- 269 (628)
Q Consensus 230 --------------------------------l~~L~~L~L~~n~l~~-lp~~~~~-l~~L~~L~l~----~n~l~~~-- 269 (628)
+++|+.|+++.|.++. .+..+.. +++|++|+++ .|.+++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 4444444444444432 1112221 4455555553 3444432
Q ss_pred ---CCCcccCCccccEEEcCCCc--CCCCCccccC-CCCCCCEEeCCCCcCcc-cCChhhcCCCCCCEEECcCCccccc-
Q 037488 270 ---LPLEIGNLKVLIKIDLSMNN--FSGVIPITIG-YLKDLQYLFLEYNRLQG-SIPDSIGDLINLKSLDLSNNNLSGI- 341 (628)
Q Consensus 270 ---~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~-~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~N~l~~~- 341 (628)
++..+.++++|+.|+++++. +++..+..+. .+++|++|++++|++++ .++..+..+++|+.|++++|.+++.
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 504 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence 11113345555555554322 3322222221 25556666666666543 2233345556666666666665432
Q ss_pred CchhhhcCCCCCEEEccCCcce
Q 037488 342 IPISLEKLLDLKDINVSFNKLE 363 (628)
Q Consensus 342 ~~~~~~~l~~L~~l~l~~N~l~ 363 (628)
++.....+++|+.|++++|+++
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHHHhcCccCeeECcCCcCC
Confidence 2233345566666666666554
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-26 Score=228.80 Aligned_cols=185 Identities=22% Similarity=0.345 Sum_probs=137.7
Q ss_pred HhhcCCCcccccccCCccEEEEEEec------CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCC
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDD 496 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 496 (628)
...++|...+.||+|+||.||+|+.. +++.||||++.... ......+.+|++++++++||||+++++++..++
T Consensus 22 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 101 (322)
T 1p4o_A 22 VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ 101 (322)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS
T ss_pred chhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCC
Confidence 44577889999999999999999753 47889999997543 344567899999999999999999999875432
Q ss_pred cc----------------------------------------------------------------------------cc
Q 037488 497 FK----------------------------------------------------------------------------AD 500 (628)
Q Consensus 497 ~~----------------------------------------------------------------------------~D 500 (628)
.. +|
T Consensus 102 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~~~kl~D 181 (322)
T 1p4o_A 102 PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGD 181 (322)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEECC
T ss_pred ccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCCCeEEECc
Confidence 11 39
Q ss_pred ccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCC
Q 037488 501 FGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPI 579 (628)
Q Consensus 501 FGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~ 579 (628)
||+++...............||+.|+|||++.+..++.++||||+||++|||++ |+.||..... ..........
T Consensus 182 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~-----~~~~~~~~~~ 256 (322)
T 1p4o_A 182 FGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN-----EQVLRFVMEG 256 (322)
T ss_dssp TTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH-----HHHHHHHHTT
T ss_pred CccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH-----HHHHHHHHcC
Confidence 999986544332222344568999999999999999999999999999999999 8999865321 1111111000
Q ss_pred ccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 580 SVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ....+..++.++.+++.+||+.||++|||+.|+
T Consensus 257 --------~-------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~ 290 (322)
T 1p4o_A 257 --------G-------LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEI 290 (322)
T ss_dssp --------C-------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred --------C-------cCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence 0 011223456779999999999999999998763
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=99.92 E-value=7e-26 Score=235.32 Aligned_cols=194 Identities=20% Similarity=0.216 Sum_probs=132.1
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc------c-
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF------K- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------~- 498 (628)
..+|...+.||+|+||+||+|+...+..||+|++..... ...+|+++++.++|||||+++++|..... .
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 346888999999999999999986666699999864322 12479999999999999999988732110 0
Q ss_pred ---------------------------------------------------------------------ccccccccccc
Q 037488 499 ---------------------------------------------------------------------ADFGMAKPLLK 509 (628)
Q Consensus 499 ---------------------------------------------------------------------~DFGla~~~~~ 509 (628)
+|||+|+....
T Consensus 115 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~ 194 (394)
T 4e7w_A 115 LVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIA 194 (394)
T ss_dssp EEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred EEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccC
Confidence 49999987643
Q ss_pred cCcccccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccc--eeec
Q 037488 510 EDQSLIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVM--KVVD 586 (628)
Q Consensus 510 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 586 (628)
.. .....+||++|+|||++.+. .|+.++||||+||++|||++|++||.+.... ..+............. ....
T Consensus 195 ~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~-~~l~~i~~~~g~p~~~~~~~~~ 270 (394)
T 4e7w_A 195 GE---PNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGI-DQLVEIIKVLGTPSREQIKTMN 270 (394)
T ss_dssp TC---CCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCHHHHHHHC
T ss_pred CC---CCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCCHHHHHhhC
Confidence 32 22456799999999998765 5999999999999999999999999763221 1122222111100000 0000
Q ss_pred cccc-------CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 587 AHLL-------SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 587 ~~~~-------~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
+... .........+..+++++.+|+.+||+.||++|||+.|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e 318 (394)
T 4e7w_A 271 PNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIE 318 (394)
T ss_dssp GGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHH
T ss_pred hhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHH
Confidence 0000 0001111123346778999999999999999999865
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9e-26 Score=227.41 Aligned_cols=185 Identities=19% Similarity=0.340 Sum_probs=126.8
Q ss_pred HhhcCCCcccccccCCccEEEEEEec----CCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRIH----YGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF 497 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 497 (628)
...++|...+.||+|+||.||+|... +++.||||+++.. .....+.+.+|++++++++||||+++++++...+.
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 110 (313)
T 3brb_A 31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSS 110 (313)
T ss_dssp CCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC---
T ss_pred cCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccc
Confidence 34567888899999999999999763 4568999999754 34446778999999999999999999997643210
Q ss_pred ---------------------------------c--------------------------------------------cc
Q 037488 498 ---------------------------------K--------------------------------------------AD 500 (628)
Q Consensus 498 ---------------------------------~--------------------------------------------~D 500 (628)
. +|
T Consensus 111 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kl~D 190 (313)
T 3brb_A 111 QGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVAD 190 (313)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTSCEEECS
T ss_pred cCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEEee
Confidence 0 39
Q ss_pred ccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCC
Q 037488 501 FGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPI 579 (628)
Q Consensus 501 FGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~ 579 (628)
||+++...............||+.|+|||++.+..++.++|||||||++|||++ |+.||...... ........
T Consensus 191 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~~~~~---- 264 (313)
T 3brb_A 191 FGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNH--EMYDYLLH---- 264 (313)
T ss_dssp CSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHHHT----
T ss_pred cCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHH--HHHHHHHc----
Confidence 999986543322222234468899999999999999999999999999999999 89998653221 11111110
Q ss_pred ccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 580 SVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .....+..++.++.+++.+||+.||++|||+.++
T Consensus 265 -----------~---~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 299 (313)
T 3brb_A 265 -----------G---HRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVL 299 (313)
T ss_dssp -----------T---CCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHH
T ss_pred -----------C---CCCCCCccccHHHHHHHHHHcCCChhhCcCHHHH
Confidence 0 0112233456779999999999999999998753
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=7e-26 Score=233.12 Aligned_cols=181 Identities=23% Similarity=0.374 Sum_probs=123.2
Q ss_pred CCCcccccccCCccEEEEEEec--C--CcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCC-cc---
Q 037488 428 GFSENNLIDRGGIGYVYKRRIH--Y--GMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD-FK--- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~~--~--~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~--- 498 (628)
.|...+.||+|+||.||+|+.. + +..||||.++.. .....+.|.+|+.++++++|||||+++++|...+ ..
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv 169 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV 169 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence 4566789999999999999862 2 346899998653 3345678999999999999999999999864322 10
Q ss_pred ----------------------------------------------------------------ccccccccccccCcc-
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQS- 513 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~- 513 (628)
+|||+|+........
T Consensus 170 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~ 249 (373)
T 3c1x_A 170 LPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDS 249 (373)
T ss_dssp EECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-------------
T ss_pred EECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeecccccccccccccc
Confidence 399999865332211
Q ss_pred -cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 514 -LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 514 -~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
.......||+.|+|||++.+..++.++|||||||++|||+| |.+||......+ ........
T Consensus 250 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~--~~~~~~~~--------------- 312 (373)
T 3c1x_A 250 VHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD--ITVYLLQG--------------- 312 (373)
T ss_dssp --------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSC--HHHHHHTT---------------
T ss_pred ccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHH--HHHHHHcC---------------
Confidence 11233468899999999999999999999999999999999 678886543221 11111110
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.|+
T Consensus 313 ---~~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~el 346 (373)
T 3c1x_A 313 ---RRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSEL 346 (373)
T ss_dssp ---CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ---CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 0111233456779999999999999999998763
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=223.87 Aligned_cols=183 Identities=24% Similarity=0.365 Sum_probs=139.0
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
...++|...+.||+|+||.||+|.. .+++.||||++.... ...+.+.+|++++++++||||+++++++..++..
T Consensus 10 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 88 (288)
T 3kfa_A 10 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT 88 (288)
T ss_dssp CCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEE
T ss_pred ccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEE
Confidence 3466788889999999999999997 568999999997543 3456789999999999999999999988654321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+|+...... ..
T Consensus 89 e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~-~~ 167 (288)
T 3kfa_A 89 EFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT-YT 167 (288)
T ss_dssp ECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS-SE
T ss_pred EcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCccceeccCCc-cc
Confidence 3999998654332 12
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
......||+.|+|||++.+..++.++||||+||++|||++ |+.||...... .........
T Consensus 168 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~--~~~~~~~~~----------------- 228 (288)
T 3kfa_A 168 AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLEKD----------------- 228 (288)
T ss_dssp EETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHHHTT-----------------
T ss_pred cccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHhcc-----------------
Confidence 2334568899999999999999999999999999999999 99999753221 111111110
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.|+
T Consensus 229 -~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~ 262 (288)
T 3kfa_A 229 -YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262 (288)
T ss_dssp -CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred -CCCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHH
Confidence 0112233456779999999999999999998763
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-26 Score=222.70 Aligned_cols=176 Identities=19% Similarity=0.304 Sum_probs=128.2
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCC--Ccc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSND--DFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~--- 498 (628)
.++|...+.||+|+||.||+|+.. |+.||||+++... ....+.+.+|++++++++||||++++++|... ...
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 457888999999999999999986 8899999997542 34456799999999999999999999998654 210
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
.|||++..
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~----- 162 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFS----- 162 (271)
T ss_dssp EECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCT-----
T ss_pred ecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccceee-----
Confidence 02222221
Q ss_pred cccccccccccccccCccccccCccCc---ccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccc
Q 037488 512 QSLIQTQTLATIGYMAPEYGREGRVST---NGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (628)
.......||+.|+|||++.+..++. ++||||+||++|||++|+.||........ .......
T Consensus 163 --~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-~~~~~~~------------- 226 (271)
T 3kmu_A 163 --FQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEI-GMKVALE------------- 226 (271)
T ss_dssp --TSCTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHH-HHHHHHS-------------
T ss_pred --ecccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHH-HHHHHhc-------------
Confidence 1113356899999999998766554 89999999999999999999975321110 0000000
Q ss_pred ccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+..++.++.+++.+||+.||++|||+.|+
T Consensus 227 -----~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i 261 (271)
T 3kmu_A 227 -----GLRPTIPPGISPHVSKLMKICMNEDPAKRPKFDMI 261 (271)
T ss_dssp -----CCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred -----CCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 00112233456779999999999999999998763
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-25 Score=225.92 Aligned_cols=185 Identities=22% Similarity=0.228 Sum_probs=112.7
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHH-HhhcccCCCcceeeeeccCCCcc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECD-MMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
.++|...+.||+|+||.||+|.. .+|+.||||+++... ......+.+|+. +++.++||||+++++++..++..
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~ 100 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM 100 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence 46788889999999999999987 579999999997542 333445666665 77888999999999987543211
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||+++......
T Consensus 101 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~ 180 (327)
T 3aln_A 101 ELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSI 180 (327)
T ss_dssp CCCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC-----
T ss_pred eecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCCCEEEccCCCceeccccc
Confidence 3999988654322
Q ss_pred cccccccccccccccCcccc----ccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecc
Q 037488 512 QSLIQTQTLATIGYMAPEYG----REGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (628)
......||+.|+|||++ .+..++.++|||||||++|||++|+.||........ . .......
T Consensus 181 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~----~--------~~~~~~~ 245 (327)
T 3aln_A 181 ---AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFD----Q--------LTQVVKG 245 (327)
T ss_dssp ----------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------------------CCCCCS
T ss_pred ---ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHH----H--------HHHHhcC
Confidence 12334799999999998 456799999999999999999999999975321100 0 0000000
Q ss_pred cccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. .......+..++.++.+++.+||+.||++|||+.|+
T Consensus 246 ~~---~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el 283 (327)
T 3aln_A 246 DP---PQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKEL 283 (327)
T ss_dssp CC---CCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CC---CCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHH
Confidence 00 000011122456779999999999999999998763
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-26 Score=228.83 Aligned_cols=185 Identities=19% Similarity=0.234 Sum_probs=133.2
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCC---------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSND--------- 495 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--------- 495 (628)
.++|...+.||+|+||.||+|+. .+|+.||||++........+.+.+|+++++.++||||+++++++...
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 107 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL 107 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence 46789999999999999999987 67999999999776666677899999999999999999999987521
Q ss_pred --------Cc-------------c--------------------------------------------cccccccccccc
Q 037488 496 --------DF-------------K--------------------------------------------ADFGMAKPLLKE 510 (628)
Q Consensus 496 --------~~-------------~--------------------------------------------~DFGla~~~~~~ 510 (628)
.. . +|||+++.....
T Consensus 108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~ 187 (317)
T 2buj_A 108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIH 187 (317)
T ss_dssp EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCSSCEESCEE
T ss_pred EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEEecCcchhcccc
Confidence 00 0 389988754321
Q ss_pred Ccc-------cccccccccccccCccccccCc---cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc
Q 037488 511 DQS-------LIQTQTLATIGYMAPEYGREGR---VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS 580 (628)
Q Consensus 511 ~~~-------~~~~~~~gt~~y~aPE~~~~~~---~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~ 580 (628)
... .......||+.|+|||++.+.. ++.++|||||||++|||++|+.||.................
T Consensus 188 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~---- 263 (317)
T 2buj_A 188 VEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQ---- 263 (317)
T ss_dssp EESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC----
T ss_pred cccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhcc----
Confidence 110 0112345899999999987654 79999999999999999999999965322222221111100
Q ss_pred cceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 581 VMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+.+..++.++.+++.+||+.||++|||+.|+
T Consensus 264 --------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 297 (317)
T 2buj_A 264 --------------LSIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLL 297 (317)
T ss_dssp ----------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred --------------CCCCccccCCHHHHHHHHHHhhcChhhCCCHHHH
Confidence 0011122346679999999999999999998753
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-26 Score=230.25 Aligned_cols=183 Identities=24% Similarity=0.394 Sum_probs=134.9
Q ss_pred hcCCCcccccccCCccEEEEEEe--------cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCC
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI--------HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHI-RHRNLIKIISSCSND 495 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~--------~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 495 (628)
.++|...+.||+|+||.||+|+. .+++.||||+++.. .....+.+.+|+++++++ +||||++++++|..+
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 46788899999999999999986 24678999999754 334567789999999999 899999999987532
Q ss_pred Cc--------------------------------------c---------------------------------------
Q 037488 496 DF--------------------------------------K--------------------------------------- 498 (628)
Q Consensus 496 ~~--------------------------------------~--------------------------------------- 498 (628)
+. .
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~ 193 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTEN 193 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTT
T ss_pred CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccceEEEcCC
Confidence 10 0
Q ss_pred -----ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHH
Q 037488 499 -----ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHW 572 (628)
Q Consensus 499 -----~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~ 572 (628)
+|||+++...............||+.|+|||++.+..++.++||||+||++|||++ |+.||.+.... .....
T Consensus 194 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~ 271 (334)
T 2pvf_A 194 NVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE--ELFKL 271 (334)
T ss_dssp CCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHHHH
T ss_pred CCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHH--HHHHH
Confidence 39999986544332222334568899999999998899999999999999999999 99999653211 11111
Q ss_pred HHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 573 VNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.... .....+..++.++.+++.+||+.||++|||+.|+
T Consensus 272 ~~~~------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el 309 (334)
T 2pvf_A 272 LKEG------------------HRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQL 309 (334)
T ss_dssp HHHT------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HhcC------------------CCCCCCccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 1110 0011233456779999999999999999998763
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-26 Score=237.80 Aligned_cols=172 Identities=12% Similarity=0.078 Sum_probs=126.2
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHH---HHhhcccCCCcceee-------ee
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIEC---DMMKHIRHRNLIKII-------SS 491 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~---~~l~~l~h~niv~l~-------~~ 491 (628)
.++|...+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|+ +++++++|||||+++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 56788899999999999999997 67999999999742 334567789999 566666899999887 32
Q ss_pred ccCCC-------------------c-------------------------------------------------------
Q 037488 492 CSNDD-------------------F------------------------------------------------------- 497 (628)
Q Consensus 492 ~~~~~-------------------~------------------------------------------------------- 497 (628)
+..+. +
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrD 231 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTY 231 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECCSEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred hhccCCccccccccCCCceEEEEEEEEEeccCCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence 22110 0
Q ss_pred ---------------cccccccccccccCcccccccccccccccCccccccC-----------ccCcccchhhHhHHHHH
Q 037488 498 ---------------KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREG-----------RVSTNGDVYSFGIMLIE 551 (628)
Q Consensus 498 ---------------~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~DVwS~Gvvl~e 551 (628)
.+|||+|+.... .....+| +.|+|||++.+. .|+.++|||||||++||
T Consensus 232 ikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~e 305 (377)
T 3byv_A 232 LRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYW 305 (377)
T ss_dssp CCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHH
T ss_pred CCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHH
Confidence 049999985322 2245578 999999999887 89999999999999999
Q ss_pred HhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 552 TFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 552 ~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
|++|+.||....... ...... ..+..++.++.+++.+||+.||++|||+.|+
T Consensus 306 lltg~~Pf~~~~~~~-----------------~~~~~~--------~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~ 357 (377)
T 3byv_A 306 IWCADLPITKDAALG-----------------GSEWIF--------RSCKNIPQPVRALLEGFLRYPKEDRLLPLQA 357 (377)
T ss_dssp HHHSSCCC------C-----------------CSGGGG--------SSCCCCCHHHHHHHHHHTCSSGGGCCCHHHH
T ss_pred HHHCCCCCccccccc-----------------chhhhh--------hhccCCCHHHHHHHHHHcCCCchhCCCHHHH
Confidence 999999996532211 001110 0112346679999999999999999998763
|
| >3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-25 Score=230.36 Aligned_cols=197 Identities=19% Similarity=0.185 Sum_probs=134.2
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
.++|...+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+.+++.++||||+++++++.....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 46788999999999999999987 67999999999653 23345678999999999999999999998765321
Q ss_pred --c--------------------------------------------------------------ccccccccccccCcc
Q 037488 498 --K--------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 498 --~--------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
. +|||+++.....
T Consensus 103 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~--- 179 (353)
T 3coi_A 103 DFYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAE--- 179 (353)
T ss_dssp CCEEEEECCSEEGGGTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTCTTC-------
T ss_pred eEEEEeccccCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeecccccCCCCC---
Confidence 0 399998864322
Q ss_pred cccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhh-cCC-ccc-ee-----
Q 037488 514 LIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDL-LPI-SVM-KV----- 584 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~-~~~-~~~-~~----- 584 (628)
....+||++|+|||++.+ ..++.++||||+||++|||++|+.||.+....+ .+....... .+. ... .+
T Consensus 180 --~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 3coi_A 180 --MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILKVTGVPGTEFVQKLNDKAA 256 (353)
T ss_dssp ------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHH-HHHHHHHHHCBCCHHHHTTCSCHHH
T ss_pred --ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCCHHHHHHHhhHHH
Confidence 234579999999999887 678999999999999999999999997532111 111111110 000 000 00
Q ss_pred ---ecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 585 ---VDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 585 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...............+..++.++.+++.+||+.||++|||+.|+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~ 303 (353)
T 3coi_A 257 KSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQA 303 (353)
T ss_dssp HHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred HHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHH
Confidence 00000000000011223457789999999999999999998653
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-26 Score=224.36 Aligned_cols=182 Identities=23% Similarity=0.339 Sum_probs=136.7
Q ss_pred hhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
..++|...+.||+|+||.||+|+..+++.||||++..... ..+.+.+|++++++++||||+++++++.++...
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~ 89 (279)
T 1qpc_A 11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYM 89 (279)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECC
T ss_pred CHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-cHHHHHHHHHHHHhCCCcCcceEEEEEcCCCcEEEEecC
Confidence 3467888999999999999999988788999999975432 346789999999999999999999987653311
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+++...... .....
T Consensus 90 ~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~ 168 (279)
T 1qpc_A 90 ENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-YTARE 168 (279)
T ss_dssp TTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC-EECCT
T ss_pred CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCcccccccCcc-ccccc
Confidence 3999998654322 11223
Q ss_pred cccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 518 QTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...||..|+|||++.++.++.++||||+||++|||++ |+.||.+.... ......... ..
T Consensus 169 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~~~~~~------------------~~ 228 (279)
T 1qpc_A 169 GAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP--EVIQNLERG------------------YR 228 (279)
T ss_dssp TCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTT------------------CC
T ss_pred CCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHH--HHHHHHhcc------------------cC
Confidence 4467889999999998899999999999999999999 99999653211 111111000 00
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..++.++.+++.+||+.||++|||+.++
T Consensus 229 ~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l 260 (279)
T 1qpc_A 229 MVRPDNCPEELYQLMRLCWKERPEDRPTFDYL 260 (279)
T ss_dssp CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCcccccHHHHHHHHHHhccChhhCCCHHHH
Confidence 11223456779999999999999999998653
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-26 Score=230.32 Aligned_cols=183 Identities=22% Similarity=0.345 Sum_probs=131.0
Q ss_pred hcCCCcccccccCCccEEEEEEe------cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI------HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
.++|...+.||+|+||.||+|+. .+++.||||++... .......+.+|+.++++++||||+++++++..+...
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 46788899999999999999984 35778999999643 334456789999999999999999999987643211
Q ss_pred ----------------------------------------------------------------------------cccc
Q 037488 499 ----------------------------------------------------------------------------ADFG 502 (628)
Q Consensus 499 ----------------------------------------------------------------------------~DFG 502 (628)
+|||
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg 188 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFG 188 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCH
T ss_pred EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEECccc
Confidence 3888
Q ss_pred ccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCcc
Q 037488 503 MAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISV 581 (628)
Q Consensus 503 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~ 581 (628)
+++...............||+.|+|||++.+..++.++|||||||++|||+| |+.||..... ..........
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~~~~~----- 261 (327)
T 2yfx_A 189 MARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--QEVLEFVTSG----- 261 (327)
T ss_dssp HHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHHHHHHHTT-----
T ss_pred cccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCH--HHHHHHHhcC-----
Confidence 8875433322222234568999999999999999999999999999999998 9999865321 1111111100
Q ss_pred ceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 582 MKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.||
T Consensus 262 -------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 295 (327)
T 2yfx_A 262 -------------GRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 295 (327)
T ss_dssp -------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred -------------CCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHH
Confidence 0011223456679999999999999999998763
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-25 Score=230.19 Aligned_cols=203 Identities=19% Similarity=0.140 Sum_probs=127.4
Q ss_pred HHHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc--
Q 037488 421 ELFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF-- 497 (628)
Q Consensus 421 ~l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-- 497 (628)
......++|...+.||+|+||.||+|+. .+|+.||||++.... .....+.+|++.++.++|||||++++++.....
T Consensus 17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~ 95 (360)
T 3e3p_A 17 RSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERD 95 (360)
T ss_dssp HHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSC
T ss_pred hchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhcccccc
Confidence 4456678999999999999999999987 579999999986432 223456778888999999999999887632100
Q ss_pred -----------------------------------------------------------------------------ccc
Q 037488 498 -----------------------------------------------------------------------------KAD 500 (628)
Q Consensus 498 -----------------------------------------------------------------------------~~D 500 (628)
.+|
T Consensus 96 ~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~kl~D 175 (360)
T 3e3p_A 96 RRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCD 175 (360)
T ss_dssp TTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEEECC
T ss_pred ccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEEEee
Confidence 039
Q ss_pred ccccccccccCcccccccccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC
Q 037488 501 FGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI 579 (628)
Q Consensus 501 FGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~ 579 (628)
||+|+...... ......||++|+|||++.+.. ++.++|||||||++|||++|+.||...... .....+.......
T Consensus 176 fg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~-~~~~~~~~~~~~~ 251 (360)
T 3e3p_A 176 FGSAKKLSPSE---PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSA-GQLHEIVRVLGCP 251 (360)
T ss_dssp CTTCBCCCTTS---CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCC
T ss_pred CCCceecCCCC---CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChH-HHHHHHHHHcCCC
Confidence 99998654332 224567999999999987654 899999999999999999999999763221 1122221111000
Q ss_pred --ccceeecc-----cccCCcc-----cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 580 --SVMKVVDA-----HLLSQED-----KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 580 --~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......++ ....... .........+.++.+++.+||+.||++|||+.|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~ 312 (360)
T 3e3p_A 252 SREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEA 312 (360)
T ss_dssp CHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHH
Confidence 00000000 0000000 0001122357789999999999999999998763
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.3e-26 Score=224.63 Aligned_cols=182 Identities=19% Similarity=0.220 Sum_probs=134.6
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
.++|...+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++||||+++++++......
T Consensus 21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 100 (287)
T 2wei_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG 100 (287)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEE
Confidence 46799999999999999999987 479999999997542 23456789999999999999999999987653311
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+++......
T Consensus 101 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~-- 178 (287)
T 2wei_A 101 ELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT-- 178 (287)
T ss_dssp CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCS--
T ss_pred EccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcceeecCCC--
Confidence 3899887653322
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
......||+.|+|||++.+ .++.++||||+||++|||++|+.||...... ........ ...
T Consensus 179 -~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~---------------~~~ 239 (287)
T 2wei_A 179 -KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEY--DILKRVET---------------GKY 239 (287)
T ss_dssp -SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHH---------------CCC
T ss_pred -ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHH--HHHHHHHc---------------CCC
Confidence 1234469999999999875 5999999999999999999999999653211 11111100 011
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+.+..++.++.+++.+||+.||++|||+.|+
T Consensus 240 ~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el 274 (287)
T 2wei_A 240 AFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQC 274 (287)
T ss_dssp CCCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCchhhhhcCHHHHHHHHHHcccChhhCcCHHHH
Confidence 11111223456779999999999999999998753
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-26 Score=221.70 Aligned_cols=181 Identities=23% Similarity=0.328 Sum_probs=135.6
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
.++|...+.||+|+||.||+|...+++.||+|++..... ..+.+.+|++++++++||||+++++++..++..
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFM 85 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCC
T ss_pred hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCC
Confidence 457888899999999999999988888999999975432 235789999999999999999999988654321
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+++...... ......
T Consensus 86 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~-~~~~~~ 164 (267)
T 3t9t_A 86 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YTSSTG 164 (267)
T ss_dssp TTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH-HHSTTS
T ss_pred CCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEccccccccccccc-cccccc
Confidence 3999998653321 112234
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccch
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHF 597 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (628)
..||..|+|||++.+..++.++||||+||++|||++ |+.||..... ......... . ...
T Consensus 165 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~~~~~i~~------------~---~~~ 224 (267)
T 3t9t_A 165 TKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN-----SEVVEDIST------------G---FRL 224 (267)
T ss_dssp TTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHHHT------------T---CCC
T ss_pred ccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCH-----HHHHHHHhc------------C---CcC
Confidence 568889999999998899999999999999999999 8999965321 111111100 0 001
Q ss_pred hchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 598 VIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 598 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+..++.++.+++.+||+.||++|||+.|+
T Consensus 225 ~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l 255 (267)
T 3t9t_A 225 YKPRLASTHVYQIMNHCWRERPEDRPAFSRL 255 (267)
T ss_dssp CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCccCcHHHHHHHHHHccCChhhCcCHHHH
Confidence 1122345679999999999999999998763
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-26 Score=227.14 Aligned_cols=175 Identities=21% Similarity=0.316 Sum_probs=127.0
Q ss_pred hcCCCcccccccCCccEEEEEEec-CC-------cEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH-YG-------MEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 497 (628)
.++|...+.||+|+||.||+|+.. ++ +.||+|++........+.+.+|++++++++||||+++++++..++.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE 86 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence 467888899999999999999863 33 5799999977666667789999999999999999999998765432
Q ss_pred c---------------------------------------------------------------------------cccc
Q 037488 498 K---------------------------------------------------------------------------ADFG 502 (628)
Q Consensus 498 ~---------------------------------------------------------------------------~DFG 502 (628)
. +|||
T Consensus 87 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg 166 (289)
T 4fvq_A 87 NILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPG 166 (289)
T ss_dssp CEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccceeeeccCc
Confidence 1 2677
Q ss_pred ccccccccCcccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCC-CCCcccCCCccHHHHHHhhcCCc
Q 037488 503 MAKPLLKEDQSLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKK-PTDEIFSGEMTLKHWVNDLLPIS 580 (628)
Q Consensus 503 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~-p~~~~~~~~~~~~~~~~~~~~~~ 580 (628)
+++..... ....||+.|+|||++.+ ..++.++||||+||++|||++|.. |+... ... .........
T Consensus 167 ~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~-~~~-~~~~~~~~~---- 234 (289)
T 4fvq_A 167 ISITVLPK------DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSAL-DSQ-RKLQFYEDR---- 234 (289)
T ss_dssp SCTTTSCH------HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTS-CHH-HHHHHHHTT----
T ss_pred ccccccCc------cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCcccc-chH-HHHHHhhcc----
Confidence 66543211 23458999999999987 679999999999999999999654 44331 111 011111000
Q ss_pred cceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 581 VMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+...+.++.+++.+||+.||++|||+.|+
T Consensus 235 ----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 266 (289)
T 4fvq_A 235 ----------------HQLPAPKAAELANLINNCMDYEPDHRPSFRAI 266 (289)
T ss_dssp ----------------CCCCCCSSCTTHHHHHHHSCSSGGGSCCHHHH
T ss_pred ----------------CCCCCCCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 00111223448899999999999999998763
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-26 Score=222.79 Aligned_cols=179 Identities=22% Similarity=0.265 Sum_probs=126.8
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|...+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|+++++.++||||+++++++..++..
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 46789999999999999999997 479999999997543 22356788999999999999999999987654321
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++...... .
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~---~ 166 (276)
T 2h6d_A 90 MEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE---F 166 (276)
T ss_dssp EECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC------
T ss_pred EeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeecccccccCCCc---c
Confidence 3999988654322 1
Q ss_pred cccccccccccCccccccCcc-CcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 516 QTQTLATIGYMAPEYGREGRV-STNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~-~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
.....||+.|+|||++.+..+ +.++||||+||++|||++|+.||.... ......... ...
T Consensus 167 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~-----~~~~~~~~~------------~~~-- 227 (276)
T 2h6d_A 167 LRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH-----VPTLFKKIR------------GGV-- 227 (276)
T ss_dssp ----------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHHHH------------HCC--
T ss_pred eecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCc-----HHHHHHHhh------------cCc--
Confidence 234579999999999988775 689999999999999999999996521 111111100 000
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..++.++.+++.+||+.||++|||+.|+
T Consensus 228 --~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~ 259 (276)
T 2h6d_A 228 --FYIPEYLNRSVATLLMHMLQVDPLKRATIKDI 259 (276)
T ss_dssp --CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred --ccCchhcCHHHHHHHHHHccCChhhCCCHHHH
Confidence 11122345668999999999999999998763
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-26 Score=228.77 Aligned_cols=193 Identities=20% Similarity=0.273 Sum_probs=134.0
Q ss_pred CCcccccccCCccEEEEEEe-----cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc--c--
Q 037488 429 FSENNLIDRGGIGYVYKRRI-----HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--K-- 498 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--~-- 498 (628)
|...+.||+|+||.||++.+ .+|+.||||+++... ....+.+.+|++++++++||||+++++++.+.+. .
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 48889999999999998864 268899999997643 3446778999999999999999999998865311 0
Q ss_pred ---------------------------------------------------------------ccccccccccccCcc-c
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQS-L 514 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~-~ 514 (628)
+|||+|+........ .
T Consensus 113 v~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~ 192 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYR 192 (318)
T ss_dssp EECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEE
T ss_pred EEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCccccccccccccccc
Confidence 399999876433221 1
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccce--eecccccCC
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMK--VVDAHLLSQ 592 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 592 (628)
......||..|+|||++.+..++.++||||+||++|||+||+.||....... ..+. ........ .+.....
T Consensus 193 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~-- 265 (318)
T 3lxp_A 193 VREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKF---LELI--GIAQGQMTVLRLTELLE-- 265 (318)
T ss_dssp C---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHH---HHHH--CSCCHHHHHHHHHHHHH--
T ss_pred cccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhh---hhhh--cccccchhHHHHHHHHh--
Confidence 2234568999999999999999999999999999999999999986421100 0000 00000000 0000000
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+..++.++.+++.+||+.||++|||+.|+
T Consensus 266 ~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~el 301 (318)
T 3lxp_A 266 RGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENL 301 (318)
T ss_dssp TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred cccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHH
Confidence 001122344567789999999999999999998763
|
| >1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-25 Score=224.75 Aligned_cols=186 Identities=11% Similarity=0.044 Sum_probs=136.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~----- 498 (628)
.++|...+.||+|+||.||+|+. .+|+.||||++.... ..+.+.+|+++++.+ +|+|++++++++..+...
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e 86 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 86 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence 46799999999999999999986 679999999986432 234578899999999 899999998876543211
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+|+.......
T Consensus 87 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~ 166 (298)
T 1csn_A 87 LLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVT 166 (298)
T ss_dssp CCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTT
T ss_pred ecCCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccc
Confidence 49999986643321
Q ss_pred c-----cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCcc--HHHHHHhhcCCccceee
Q 037488 513 S-----LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMT--LKHWVNDLLPISVMKVV 585 (628)
Q Consensus 513 ~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 585 (628)
. .......||+.|+|||++.+..++.++||||+||++|||++|+.||......... .........
T Consensus 167 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~-------- 238 (298)
T 1csn_A 167 KQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQ-------- 238 (298)
T ss_dssp CCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHH--------
T ss_pred cccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhcc--------
Confidence 1 1224457999999999999999999999999999999999999999764322211 111110000
Q ss_pred cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .........++.++.+++.+||+.||++|||+++|
T Consensus 239 ----~---~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l 274 (298)
T 1csn_A 239 ----S---TPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYL 274 (298)
T ss_dssp ----H---SCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHH
T ss_pred ----C---ccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHH
Confidence 0 00011222456789999999999999999998753
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-25 Score=222.15 Aligned_cols=182 Identities=21% Similarity=0.341 Sum_probs=130.2
Q ss_pred CCCcccccccCCccEEEEEEe-cC---CcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HY---GMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~---~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
.|...+.||+|+||.||+|+. .+ +..||+|++... .....+.+.+|++++++++||||+++++++...+..
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 345568899999999999985 22 347999999753 334567889999999999999999999988643211
Q ss_pred ----------------------------------------------------------------ccccccccccccCc--
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQ-- 512 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~-- 512 (628)
+|||+|+.......
T Consensus 102 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~ 181 (298)
T 3pls_A 102 LPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYS 181 (298)
T ss_dssp ECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGC
T ss_pred EecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccc
Confidence 39999986533221
Q ss_pred ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 513 SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
........||+.|+|||.+.+..++.++||||+||++|||++|..|+..... ............
T Consensus 182 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~-~~~~~~~~~~~~--------------- 245 (298)
T 3pls_A 182 VQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHID-PFDLTHFLAQGR--------------- 245 (298)
T ss_dssp SCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC-GGGHHHHHHTTC---------------
T ss_pred cccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCC-HHHHHHHhhcCC---------------
Confidence 1122345689999999999999999999999999999999996555432211 111211111100
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++.+++.+||+.||++|||+.|+
T Consensus 246 ---~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l 278 (298)
T 3pls_A 246 ---RLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVL 278 (298)
T ss_dssp ---CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ---CCCCCccchHHHHHHHHHHccCChhhCcCHHHH
Confidence 111223456679999999999999999998753
|
| >3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-26 Score=233.13 Aligned_cols=194 Identities=14% Similarity=0.093 Sum_probs=133.5
Q ss_pred hhcCCCcccccccCCccEEEEEEecC------CcEEEEEEeeccchhH-----------HHHHHHHHHHhhcccCCCcce
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIHY------GMEVAVKVFDLQYREA-----------FKNFDIECDMMKHIRHRNLIK 487 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~~------~~~vavK~~~~~~~~~-----------~~~~~~E~~~l~~l~h~niv~ 487 (628)
..++|...+.||+|+||.||+|.+.. ++.||||++....... ...+.+|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 35689999999999999999998743 4789999986543211 123456777888899999999
Q ss_pred eeeeccCCCc----------------------------------------------------------------------
Q 037488 488 IISSCSNDDF---------------------------------------------------------------------- 497 (628)
Q Consensus 488 l~~~~~~~~~---------------------------------------------------------------------- 497 (628)
+++++.....
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~~~~ 192 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQ 192 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECEEEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESSCTTC
T ss_pred EEeeeeeccCCcceEEEEEeCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecCCCCe
Confidence 9988654210
Q ss_pred --cccccccccccccCcc-----cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHH
Q 037488 498 --KADFGMAKPLLKEDQS-----LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLK 570 (628)
Q Consensus 498 --~~DFGla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~ 570 (628)
.+|||+|+.+...... ......+||+.|||||++.+..++.++|||||||++|||+||+.||.+..... ...
T Consensus 193 ~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~-~~~ 271 (364)
T 3op5_A 193 VYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDP-KYV 271 (364)
T ss_dssp EEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCH-HHH
T ss_pred EEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCH-HHH
Confidence 0499999876433211 11133459999999999999999999999999999999999999998643322 111
Q ss_pred HHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 571 HWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...............++.+ ....++.++.+++.+||+.||++||++.+|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~li~~cl~~~p~~RP~~~~l 320 (364)
T 3op5_A 272 RDSKIRYRENIASLMDKCF---------PAANAPGEIAKYMETVKLLDYTEKPLYENL 320 (364)
T ss_dssp HHHHHHHHHCHHHHHHHHS---------CTTCCCHHHHHHHHHHHTCCTTCCCCHHHH
T ss_pred HHHHHHhhhhHHHHHHHhc---------ccccCHHHHHHHHHHHhcCCCCCCCCHHHH
Confidence 1111111111111111111 112346779999999999999999998753
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.3e-26 Score=226.09 Aligned_cols=193 Identities=22% Similarity=0.350 Sum_probs=134.4
Q ss_pred cCCCcccccccCCccEEEEEEe-----cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc--c
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-----HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--K 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--~ 498 (628)
..|...+.||+|+||.||+|++ .+++.||||+++... ....+.+.+|++++++++||||+++++++...+. .
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 100 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence 4477889999999999999983 468999999997543 2345678999999999999999999998765411 0
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||+|+......
T Consensus 101 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 180 (302)
T 4e5w_A 101 KLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDK 180 (302)
T ss_dssp EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTC
T ss_pred EEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECcccccccccCCC
Confidence 3999998764432
Q ss_pred cc-cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcc----ceeec
Q 037488 512 QS-LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISV----MKVVD 586 (628)
Q Consensus 512 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 586 (628)
.. .......||..|+|||++.+..++.++||||+||++|||+||+.|+.... ..+.....+... .....
T Consensus 181 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~ 254 (302)
T 4e5w_A 181 EYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPM------ALFLKMIGPTHGQMTVTRLVN 254 (302)
T ss_dssp CEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH------HHHHHHHCSCCGGGHHHHHHH
T ss_pred cceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchh------hHHhhccCCcccccCHHHHHH
Confidence 21 22234569999999999999999999999999999999999999864321 111110000000 00000
Q ss_pred ccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 587 AHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
... .......+..++.++.+++.+||+.||++|||+.|+
T Consensus 255 -~~~--~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 293 (302)
T 4e5w_A 255 -TLK--EGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNL 293 (302)
T ss_dssp -HHH--TTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHH
T ss_pred -HHh--ccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHH
Confidence 000 011122344567789999999999999999998763
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-25 Score=219.42 Aligned_cols=178 Identities=22% Similarity=0.293 Sum_probs=129.7
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCC----Ccc--
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSND----DFK-- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~----~~~-- 498 (628)
.|...+.||+|+||.||+|.. .++..||+|++... .....+.+.+|+.++++++||||+++++++... ...
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 106 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL 106 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence 366678899999999999987 67889999999754 244567789999999999999999999875421 000
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||+|+.....
T Consensus 107 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~- 185 (290)
T 1t4h_A 107 VTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS- 185 (290)
T ss_dssp EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTT-
T ss_pred EEEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCccccccc-
Confidence 388888643222
Q ss_pred cccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 512 QSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
......||+.|+|||++. +.++.++||||+||++|||++|+.||...... ..........
T Consensus 186 ---~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~----~~~~~~~~~~------------ 245 (290)
T 1t4h_A 186 ---FAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNA----AQIYRRVTSG------------ 245 (290)
T ss_dssp ---SBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH----HHHHHHHTTT------------
T ss_pred ---ccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcH----HHHHHHHhcc------------
Confidence 123457999999999886 45999999999999999999999999653221 1111111100
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .....+...++++.+++.+||+.||++|||+.|+
T Consensus 246 ~--~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el 280 (290)
T 1t4h_A 246 V--KPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDL 280 (290)
T ss_dssp C--CCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred C--CccccCCCCCHHHHHHHHHHccCChhhCCCHHHH
Confidence 0 0111222345679999999999999999998763
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-25 Score=224.80 Aligned_cols=182 Identities=24% Similarity=0.286 Sum_probs=130.7
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
..+.|...+.||+|+||.||+|.. .+|+.||||++.... ..+.+.+|++++++++||||+++++++..+...
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence 456789999999999999999987 569999999997543 345688999999999999999999987543211
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++...... ...
T Consensus 105 ~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~--~~~ 182 (314)
T 3com_A 105 YCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTM--AKR 182 (314)
T ss_dssp CCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTB--SCB
T ss_pred cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhc--ccc
Confidence 3999998654322 122
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
....||+.|+|||++.+..++.++||||+||++|||++|+.||....... ........ ....
T Consensus 183 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~~----------------~~~~ 244 (314)
T 3com_A 183 NTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMR--AIFMIPTN----------------PPPT 244 (314)
T ss_dssp CCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHH--HHHHHHHS----------------CCCC
T ss_pred CccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHH--HHHHHhcC----------------CCcc
Confidence 44579999999999999999999999999999999999999997532110 00000000 0001
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..++.++.+++.+||+.||++|||+.|+
T Consensus 245 ~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~l 276 (314)
T 3com_A 245 FRKPELWSDNFTDFVKQCLVKSPEQRATATQL 276 (314)
T ss_dssp CSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHH
T ss_pred cCCcccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 11233456679999999999999999998753
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-24 Score=211.56 Aligned_cols=161 Identities=30% Similarity=0.341 Sum_probs=76.0
Q ss_pred CCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEE
Q 037488 157 NLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSL 236 (628)
Q Consensus 157 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 236 (628)
.+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|++++|++++..+..|..+++|+.|
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 44455555555555554444444555555555555555544444444445555555555555544444444444444444
Q ss_pred EccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcc
Q 037488 237 HLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQG 316 (628)
Q Consensus 237 ~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 316 (628)
++++|+++.+| +..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+
T Consensus 163 ~l~~n~l~~~~-----------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 163 DLSYNQLQSLP-----------------------EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp ECCSSCCCCCC-----------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCCcCccC-----------------------HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 44444444443 3333444444444444444444444444444444444444444432
Q ss_pred cCChhhcCCCCCCEEECcCCcccccCchhhh
Q 037488 317 SIPDSIGDLINLKSLDLSNNNLSGIIPISLE 347 (628)
Q Consensus 317 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 347 (628)
. +++|+.|+++.|.++|.+|..+.
T Consensus 220 ~-------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 220 T-------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp C-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred c-------CcHHHHHHHHHHhCCCcccCccc
Confidence 2 22344455555555555554443
|
| >4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-25 Score=246.49 Aligned_cols=176 Identities=21% Similarity=0.364 Sum_probs=128.4
Q ss_pred cccccCCccEEEEEEe---cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRI---HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||.||+|.+ ..++.||||+++... ....+.+.+|++++++++|||||+++++|..+...
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~lv~E~~~~g 454 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELG 454 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTE
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEEEccCCC
Confidence 4799999999999965 357889999997543 33457899999999999999999999998654321
Q ss_pred --------------------------------------------------------ccccccccccccCcc-cccccccc
Q 037488 499 --------------------------------------------------------ADFGMAKPLLKEDQS-LIQTQTLA 521 (628)
Q Consensus 499 --------------------------------------------------------~DFGla~~~~~~~~~-~~~~~~~g 521 (628)
+|||+|+.+...... .......|
T Consensus 455 ~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~ 534 (635)
T 4fl3_A 455 PLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 534 (635)
T ss_dssp EHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------
T ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCC
Confidence 499999876433221 12233457
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhch
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (628)
|+.|+|||++.+..|+.++|||||||++|||++ |+.||.+.... .....+.. ......+
T Consensus 535 t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i~~------------------~~~~~~p 594 (635)
T 4fl3_A 535 PVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLEK------------------GERMGCP 594 (635)
T ss_dssp CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHT------------------TCCCCCC
T ss_pred ceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHc------------------CCCCCCC
Confidence 899999999999999999999999999999998 99999753221 11111110 0012233
Q ss_pred hhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 601 GQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 601 ~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..++.++.+++.+||+.||++|||+.+|
T Consensus 595 ~~~~~~l~~li~~cl~~dP~~RPs~~~l 622 (635)
T 4fl3_A 595 AGCPREMYDLMNLCWTYDVENRPGFAAV 622 (635)
T ss_dssp TTCCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHhHCcCHHHH
Confidence 4567789999999999999999998763
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-25 Score=230.94 Aligned_cols=132 Identities=20% Similarity=0.327 Sum_probs=108.6
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.++|...+.||+|+||.||+|+. .+|+.||+|++... .....+.+.+|++++++++||||+++++++..++..
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 111 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 111 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence 46788999999999999999987 57999999999764 334457789999999999999999999987543311
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+..... ..
T Consensus 112 ~~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~ 187 (360)
T 3eqc_A 112 HMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MA 187 (360)
T ss_dssp CCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH----C-
T ss_pred CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc----cc
Confidence 389988754322 12
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDE 561 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~ 561 (628)
....||+.|+|||++.+..++.++||||+||++|||++|+.||..
T Consensus 188 ~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~ 232 (360)
T 3eqc_A 188 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPP 232 (360)
T ss_dssp ---CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSC
T ss_pred cCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 345799999999999999999999999999999999999999975
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-25 Score=221.10 Aligned_cols=175 Identities=24% Similarity=0.351 Sum_probs=126.4
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-c------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF-K------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-~------ 498 (628)
.++|...+.||+|+||.||+|+.. |+.||||+++... ..+.+.+|++++++++||||+++++++.+.+. .
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~ 96 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence 467888899999999999999875 8899999997543 44678999999999999999999998643321 0
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++......
T Consensus 97 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~----- 171 (278)
T 1byg_A 97 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ----- 171 (278)
T ss_dssp CTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC-------------
T ss_pred CCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeeccccccccccc-----
Confidence 3999887543221
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
....+|+.|+|||++.+..++.++||||+||++|||+| |+.||...... .....+.. ..
T Consensus 172 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~--~~~~~~~~------------------~~ 231 (278)
T 1byg_A 172 DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DVVPRVEK------------------GY 231 (278)
T ss_dssp ----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG--GHHHHHTT------------------TC
T ss_pred cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHhc------------------CC
Confidence 23468899999999998999999999999999999998 99999753221 11111100 00
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++.+++.+||+.||++|||+.|+
T Consensus 232 ~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l 264 (278)
T 1byg_A 232 KMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQL 264 (278)
T ss_dssp CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCcccCCHHHHHHHHHHhcCChhhCCCHHHH
Confidence 112233456779999999999999999998753
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-25 Score=226.95 Aligned_cols=180 Identities=20% Similarity=0.234 Sum_probs=116.6
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhccc-CCCcceeeeeccC--------C
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIR-HRNLIKIISSCSN--------D 495 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~--------~ 495 (628)
..+|...+.||+|+||.||+|+. .+|+.||||++........+.+.+|+.+++++. ||||+++++++.. .
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 35788889999999999999997 579999999997666666778899999999996 9999999887721 0
Q ss_pred Cc----------------------------------------------------------------------cccccccc
Q 037488 496 DF----------------------------------------------------------------------KADFGMAK 505 (628)
Q Consensus 496 ~~----------------------------------------------------------------------~~DFGla~ 505 (628)
.. .+|||+++
T Consensus 107 ~~~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~ 186 (337)
T 3ll6_A 107 AEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSAT 186 (337)
T ss_dssp EEEEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCCTTCB
T ss_pred ceEEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEEEecCccce
Confidence 00 03999998
Q ss_pred cccccCccc----------ccccccccccccCcccc---ccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHH
Q 037488 506 PLLKEDQSL----------IQTQTLATIGYMAPEYG---REGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHW 572 (628)
Q Consensus 506 ~~~~~~~~~----------~~~~~~gt~~y~aPE~~---~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~ 572 (628)
......... ......||+.|+|||++ .+..++.++|||||||++|||++|+.||....... .
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~-----~ 261 (337)
T 3ll6_A 187 TISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR-----I 261 (337)
T ss_dssp CCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-------------
T ss_pred eccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHH-----h
Confidence 654322110 11234699999999998 56778999999999999999999999996532110 0
Q ss_pred HHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 573 VNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...... ...+..++..+.+++.+||+.||++|||+.|+
T Consensus 262 ------------~~~~~~------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~ 299 (337)
T 3ll6_A 262 ------------VNGKYS------IPPHDTQYTVFHSLIRAMLQVNPEERLSIAEV 299 (337)
T ss_dssp ----------------CC------CCTTCCSSGGGHHHHHHHSCSSGGGSCCHHHH
T ss_pred ------------hcCccc------CCcccccchHHHHHHHHHccCChhhCcCHHHH
Confidence 000000 01111223447899999999999999998763
|
| >2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-25 Score=230.01 Aligned_cols=193 Identities=16% Similarity=0.164 Sum_probs=129.0
Q ss_pred hcCCCcccccccCCccEEEEEEec----CCcEEEEEEeeccchh-----------HHHHHHHHHHHhhcccCCCcceeee
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH----YGMEVAVKVFDLQYRE-----------AFKNFDIECDMMKHIRHRNLIKIIS 490 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~niv~l~~ 490 (628)
.++|...+.||+|+||.||+|+.. +++.||||++...... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 467888999999999999999874 6788999998753211 1234678999999999999999999
Q ss_pred eccC----CCcc-------------------------------------------------------------------c
Q 037488 491 SCSN----DDFK-------------------------------------------------------------------A 499 (628)
Q Consensus 491 ~~~~----~~~~-------------------------------------------------------------------~ 499 (628)
++.. +... +
T Consensus 116 ~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kL~ 195 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERLGIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLA 195 (345)
T ss_dssp EEEEESSSCEEEEEEEECEEEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSSTTSEEEC
T ss_pred ccccccCCCcEEEEEEeccCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCCCCcEEEE
Confidence 8754 1110 4
Q ss_pred cccccccccccCcc-----cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHH
Q 037488 500 DFGMAKPLLKEDQS-----LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVN 574 (628)
Q Consensus 500 DFGla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~ 574 (628)
|||+|+.+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||...............
T Consensus 196 Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~ 275 (345)
T 2v62_A 196 DYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKT 275 (345)
T ss_dssp CCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHH
T ss_pred eCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHH
Confidence 99999876432211 1123457999999999999999999999999999999999999999653332222211111
Q ss_pred hhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 575 DLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+. . ..... .......++.++.+++.+||+.||++|||+.+|
T Consensus 276 ~~~~~-~----~~~~~-----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 319 (345)
T 2v62_A 276 NLLDE-L----PQSVL-----KWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQAL 319 (345)
T ss_dssp HHHHT-T----THHHH-----HHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHH
T ss_pred hhccc-c----cHHHH-----hhccccccHHHHHHHHHHHhhcCcccCCCHHHH
Confidence 11000 0 00000 000011456679999999999999999998763
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-25 Score=220.61 Aligned_cols=183 Identities=23% Similarity=0.363 Sum_probs=130.2
Q ss_pred hcCCCcccccccCCccEEEEEEecC----CcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHY----GMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~----~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
...|...+.||+|+||.||+|.... +..||+|.+... .....+.+.+|++++++++||||++++++|...+..
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 3457788999999999999998632 346899998753 344567789999999999999999999986432210
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+|+.......
T Consensus 104 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~ 183 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEY 183 (298)
T ss_dssp EEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGG
T ss_pred EEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECcccccccccccch
Confidence 39999986543221
Q ss_pred --ccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccc
Q 037488 513 --SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589 (628)
Q Consensus 513 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (628)
........||+.|+|||++.+..++.++||||+||++|||++ |.+||....... ........
T Consensus 184 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~--~~~~~~~~------------- 248 (298)
T 3f66_A 184 YSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD--ITVYLLQG------------- 248 (298)
T ss_dssp CBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTT--HHHHHHTT-------------
T ss_pred hccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHH--HHHHHhcC-------------
Confidence 112234568899999999999999999999999999999999 566665432211 11111110
Q ss_pred cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.|+
T Consensus 249 -----~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~el 282 (298)
T 3f66_A 249 -----RRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSEL 282 (298)
T ss_dssp -----CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred -----CCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 0011123346679999999999999999998763
|
| >1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-25 Score=225.01 Aligned_cols=201 Identities=22% Similarity=0.242 Sum_probs=136.4
Q ss_pred HhhcCCCcccccccCCccEEEEEEe--cCCcEEEEEEeeccch--hHHHHHHHHHHHhhcc---cCCCcceeeeecc---
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI--HYGMEVAVKVFDLQYR--EAFKNFDIECDMMKHI---RHRNLIKIISSCS--- 493 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~--~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l---~h~niv~l~~~~~--- 493 (628)
...++|...+.||+|+||.||+|+. .+|+.||||+++.... .....+.+|+.+++.+ +||||++++++|.
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~ 87 (326)
T 1blx_A 8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR 87 (326)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence 4567899999999999999999987 4688999999975432 2233567788887776 8999999999875
Q ss_pred --CCCcc-------------------------------------------------------------------cccccc
Q 037488 494 --NDDFK-------------------------------------------------------------------ADFGMA 504 (628)
Q Consensus 494 --~~~~~-------------------------------------------------------------------~DFGla 504 (628)
.+... +|||++
T Consensus 88 ~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~Dfg~~ 167 (326)
T 1blx_A 88 TDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA 167 (326)
T ss_dssp CSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSC
T ss_pred cCCCceEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEecCccc
Confidence 11100 399999
Q ss_pred ccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhc-CC--cc
Q 037488 505 KPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL-PI--SV 581 (628)
Q Consensus 505 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~-~~--~~ 581 (628)
+...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||...... ........... +. .+
T Consensus 168 ~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~ 243 (326)
T 1blx_A 168 RIYSFQM---ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV-DQLGKILDVIGLPGEEDW 243 (326)
T ss_dssp CCCCGGG---GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCCGGGS
T ss_pred ccccCCC---CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHH-HHHHHHHHHcCCCCcccC
Confidence 8654322 224567999999999999999999999999999999999999999753221 11111111110 00 00
Q ss_pred cee---eccccc-CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 582 MKV---VDAHLL-SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 582 ~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
... ...... .........+..++.++.+++.+||+.||++|||+.|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~ 294 (326)
T 1blx_A 244 PRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSA 294 (326)
T ss_dssp CTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred ccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHH
Confidence 000 000000 00001112233567789999999999999999998653
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-25 Score=222.68 Aligned_cols=183 Identities=20% Similarity=0.340 Sum_probs=132.5
Q ss_pred hcCCCccc-ccccCCccEEEEEEe---cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 426 TNGFSENN-LIDRGGIGYVYKRRI---HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 426 ~~~~~~~~-~ig~G~~g~V~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
..+|...+ .||+|+||.||+|.+ .+++.||||+++... ....+.+.+|+++++.++||||+++++++..+...
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~l 94 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWML 94 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEE
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECCCCcEE
Confidence 45677777 899999999999954 357899999997542 33357789999999999999999999988543211
Q ss_pred ----------------------------------------------------------------ccccccccccccCcc-
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQS- 513 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~- 513 (628)
+|||+++........
T Consensus 95 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~ 174 (291)
T 1xbb_A 95 VMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY 174 (291)
T ss_dssp EEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEE
T ss_pred EEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCcc
Confidence 399999876433221
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.......||+.|+|||++.+..++.++||||+||++|||++ |+.||...... .........
T Consensus 175 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~~~~~---------------- 236 (291)
T 1xbb_A 175 KAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLEKG---------------- 236 (291)
T ss_dssp EC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTT----------------
T ss_pred cccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHHcC----------------
Confidence 11223457899999999998899999999999999999999 99999753211 111111100
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.||
T Consensus 237 --~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 270 (291)
T 1xbb_A 237 --ERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAV 270 (291)
T ss_dssp --CCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred --CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 0112233456779999999999999999998763
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-25 Score=222.12 Aligned_cols=181 Identities=18% Similarity=0.216 Sum_probs=132.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCC--Ccc--
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSND--DFK-- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~-- 498 (628)
.++|...+.||+|+||.||+|+. .+|+.||+|++.... ....+.+.+|++++++++||||+++++++.+. ...
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 46789999999999999999987 579999999997542 34456789999999999999999999976321 100
Q ss_pred -------------------------------------------------------------------------ccccccc
Q 037488 499 -------------------------------------------------------------------------ADFGMAK 505 (628)
Q Consensus 499 -------------------------------------------------------------------------~DFGla~ 505 (628)
+|||+++
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~ 164 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR 164 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHH
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchhe
Confidence 2777776
Q ss_pred cccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceee
Q 037488 506 PLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVV 585 (628)
Q Consensus 506 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (628)
...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||..... .........
T Consensus 165 ~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~i~~---------- 230 (279)
T 2w5a_A 165 ILNHDT--SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ--KELAGKIRE---------- 230 (279)
T ss_dssp HC---C--HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHH----------
T ss_pred eecccc--ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCH--HHHHHHHhh----------
Confidence 543221 111234699999999999999999999999999999999999999975321 111111110
Q ss_pred cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. ....+..++.++.+++.+||+.||++|||+.||
T Consensus 231 -----~~---~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l 265 (279)
T 2w5a_A 231 -----GK---FRRIPYRYSDELNEIITRMLNLKDYHRPSVEEI 265 (279)
T ss_dssp -----TC---CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred -----cc---cccCCcccCHHHHHHHHHHcCCCcccCCCHHHH
Confidence 00 011223456679999999999999999998764
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-25 Score=225.76 Aligned_cols=195 Identities=21% Similarity=0.331 Sum_probs=137.8
Q ss_pred hcCCCcccccccCCccEEEEEEe-----cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc--c
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-----HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF--K 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--~ 498 (628)
.++|...+.||+|+||.||+|++ .+|+.||||++........+.+.+|++++++++||||+++++++...+. .
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 119 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 119 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence 45688889999999999999983 4689999999987666667789999999999999999999998754320 0
Q ss_pred -------------------------------------------------------------------ccccccccccccC
Q 037488 499 -------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 499 -------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
+|||+|+......
T Consensus 120 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~ 199 (326)
T 2w1i_A 120 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDK 199 (326)
T ss_dssp EEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCSSC
T ss_pred EEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCcchhhccccc
Confidence 3999998764332
Q ss_pred cc-cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcccee----ec
Q 037488 512 QS-LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKV----VD 586 (628)
Q Consensus 512 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 586 (628)
.. .......||..|+|||++.+..++.++||||+||++|||+||+.|+.... ..+............ +.
T Consensus 200 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 273 (326)
T 2w1i_A 200 EYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP------AEFMRMIGNDKQGQMIVFHLI 273 (326)
T ss_dssp SEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHH------HHHHHHHCTTCCTHHHHHHHH
T ss_pred cccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCH------HHHHHhhccccchhhhHHHHH
Confidence 21 11233468889999999999899999999999999999999999875321 001000000000000 00
Q ss_pred ccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 587 AHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+.. ......+..++.++.+++.+||+.||++|||+.||
T Consensus 274 ~~~~~--~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el 313 (326)
T 2w1i_A 274 ELLKN--NGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDL 313 (326)
T ss_dssp HHHHT--TCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred HHhhc--CCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHH
Confidence 00000 01122344567889999999999999999998763
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-25 Score=222.86 Aligned_cols=184 Identities=23% Similarity=0.400 Sum_probs=126.4
Q ss_pred hcCCCcccccccCCccEEEEEEe--cCC--cEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI--HYG--MEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~--~~~--~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
.++|...+.||+|+||.||+|++ .++ ..||||+++.. .....+.+.+|++++++++||||+++++++..+...
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~ 96 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMK 96 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCE
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCCce
Confidence 45788899999999999999985 233 36999998753 234567789999999999999999999987654321
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+++.......
T Consensus 97 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~ 176 (291)
T 1u46_A 97 MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDD 176 (291)
T ss_dssp EEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CC
T ss_pred eeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEcccccccccccccc
Confidence 39999987643322
Q ss_pred c-cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 513 S-LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 513 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
. .......||..|+|||++.+..++.++||||+||++|||++ |+.||..... ..........
T Consensus 177 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~~~~~~~~~----------- 240 (291)
T 1u46_A 177 HYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG-----SQILHKIDKE----------- 240 (291)
T ss_dssp EEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHHHTS-----------
T ss_pred chhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCH-----HHHHHHHHcc-----------
Confidence 1 12233468899999999998899999999999999999999 9999965321 1111111000
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+..++.++.+++.+||+.||++|||+.++
T Consensus 241 ---~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l 275 (291)
T 1u46_A 241 ---GERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVAL 275 (291)
T ss_dssp ---CCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ---CCCCCCCcCcCHHHHHHHHHHccCCcccCcCHHHH
Confidence 00111233456779999999999999999998753
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-24 Score=220.22 Aligned_cols=193 Identities=21% Similarity=0.329 Sum_probs=130.1
Q ss_pred HHhhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhc--ccCCCcceeeeeccCCC----
Q 037488 423 FQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKH--IRHRNLIKIISSCSNDD---- 496 (628)
Q Consensus 423 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~---- 496 (628)
....++|...+.||+|+||.||+|+.. |+.||||++..... ..+.+|.+++.. ++||||+++++++....
T Consensus 33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 108 (337)
T 3mdy_A 33 RTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTEE---ASWFRETEIYQTVLMRHENILGFIAADIKGTGSWT 108 (337)
T ss_dssp TTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGC
T ss_pred cccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecccc---chhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCC
Confidence 344578999999999999999999876 89999999964332 334455555554 49999999998765431
Q ss_pred cc-------------------------------------------------------------------------ccccc
Q 037488 497 FK-------------------------------------------------------------------------ADFGM 503 (628)
Q Consensus 497 ~~-------------------------------------------------------------------------~DFGl 503 (628)
.. +|||+
T Consensus 109 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~ 188 (337)
T 3mdy_A 109 QLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL 188 (337)
T ss_dssp EEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred ceEEEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCC
Confidence 00 39999
Q ss_pred cccccccCcc--cccccccccccccCccccccCccCcc------cchhhHhHHHHHHhhC----------CCCCCcccCC
Q 037488 504 AKPLLKEDQS--LIQTQTLATIGYMAPEYGREGRVSTN------GDVYSFGIMLIETFTR----------KKPTDEIFSG 565 (628)
Q Consensus 504 a~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~------~DVwS~Gvvl~e~ltg----------~~p~~~~~~~ 565 (628)
|+........ ......+||+.|+|||++.+..++.+ +|||||||++|||+|| +.||....+.
T Consensus 189 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~ 268 (337)
T 3mdy_A 189 AVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPS 268 (337)
T ss_dssp CEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCS
T ss_pred ceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCC
Confidence 8765433211 11234579999999999988776655 9999999999999999 6666554443
Q ss_pred CccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 566 EMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+......... ....+ .......++.++.+++.+||+.||++|||+.||
T Consensus 269 ~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~el 322 (337)
T 3mdy_A 269 DPSYEDMREIVCIKKL--------RPSFP-NRWSSDECLRQMGKLMTECWAHNPASRLTALRV 322 (337)
T ss_dssp SCCHHHHHHHHTTSCC--------CCCCC-GGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred CCchhhhHHHHhhhcc--------Ccccc-ccchhhHHHHHHHHHHHHhhhhChhhCCCHHHH
Confidence 3333332221111100 00000 011223678889999999999999999998764
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.7e-26 Score=226.02 Aligned_cols=195 Identities=21% Similarity=0.235 Sum_probs=117.5
Q ss_pred HHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 423 FQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 423 ~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
....++|...+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++||||+++++++..++..
T Consensus 11 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 90 (303)
T 2vwi_A 11 SINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWL 90 (303)
T ss_dssp --CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEE
T ss_pred ccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEE
Confidence 34467899999999999999999987 578999999986543 33456788999999999999999999876532210
Q ss_pred ------------------------------------------------------------------------cccccccc
Q 037488 499 ------------------------------------------------------------------------ADFGMAKP 506 (628)
Q Consensus 499 ------------------------------------------------------------------------~DFGla~~ 506 (628)
+|||+++.
T Consensus 91 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~ 170 (303)
T 2vwi_A 91 VMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAF 170 (303)
T ss_dssp EEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCHHHHH
T ss_pred EehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEEEeccchhe
Confidence 39998876
Q ss_pred ccccCc---ccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccc
Q 037488 507 LLKEDQ---SLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVM 582 (628)
Q Consensus 507 ~~~~~~---~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 582 (628)
...... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||........ . .......+....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~-~~~~~~~~~~~~ 248 (303)
T 2vwi_A 171 LATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKV-L-MLTLQNDPPSLE 248 (303)
T ss_dssp CC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGH-H-HHHHTSSCCCTT
T ss_pred eccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhH-H-HHHhccCCCccc
Confidence 533211 111234579999999999876 5689999999999999999999999976432211 1 111100000000
Q ss_pred eeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 583 KVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. .........++.++.+++.+||+.||++|||+.|+
T Consensus 249 ~~---------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l 285 (303)
T 2vwi_A 249 TG---------VQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAEL 285 (303)
T ss_dssp C--------------CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred cc---------cccchhhhhhhHHHHHHHHHHccCChhhCcCHHHH
Confidence 00 00011222346679999999999999999998763
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-25 Score=244.68 Aligned_cols=178 Identities=17% Similarity=0.198 Sum_probs=136.6
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc-
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~- 498 (628)
..++|...+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|.+++..+ +||+|+++++++.+.+..
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 457899999999999999999987 578999999997532 23456688899999988 799999999887654321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+......
T Consensus 419 lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~-- 496 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDG-- 496 (674)
T ss_dssp EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCTTCEECCCTT--
T ss_pred EEEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecceeeccccCC--
Confidence 4999998643332
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
....+.+||+.|||||++.+..|+.++||||+||++|||++|++||.+... ....... +...
T Consensus 497 ~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~-----~~~~~~i------------~~~~- 558 (674)
T 3pfq_A 497 VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE-----DELFQSI------------MEHN- 558 (674)
T ss_dssp CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHH------------HSSC-
T ss_pred cccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH-----HHHHHHH------------HhCC-
Confidence 223567899999999999999999999999999999999999999975321 1111111 1111
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
...|...+.++.+|+.+||+.||++||++
T Consensus 559 ---~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 587 (674)
T 3pfq_A 559 ---VAYPKSMSKEAVAICKGLMTKHPGKRLGC 587 (674)
T ss_dssp ---CCCCTTSCHHHHHHHHHHSCSSSTTCTTC
T ss_pred ---CCCCccCCHHHHHHHHHHccCCHHHCCCC
Confidence 11233456779999999999999999997
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=206.67 Aligned_cols=218 Identities=23% Similarity=0.274 Sum_probs=185.4
Q ss_pred eeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCc
Q 037488 139 IFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNK 218 (628)
Q Consensus 139 ~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 218 (628)
.+.+..+.+... .....+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+. ..+..+++|++|++++|.
T Consensus 23 ~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 23 KANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSC
T ss_pred HHHhcCcccccc--cccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCc
Confidence 344445544433 235578899999999999874 33 478899999999999999863 478899999999999999
Q ss_pred CcccCCCCccCCCCCcEEEccCCcCCcCCCC-ccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccc
Q 037488 219 LSGFVPASFGNLTNLRSLHLGSNQITSIPST-LLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPIT 297 (628)
Q Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 297 (628)
+++..+..|..+++|++|++++|+++.+|.. +..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 176 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence 9988888899999999999999999988765 577899999999999999888888899999999999999999888888
Q ss_pred cCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCC
Q 037488 298 IGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPRE 369 (628)
Q Consensus 298 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~ 369 (628)
++.+++|++|++++|++++..+..+..+++|+.|++++|.+.+. +++++.++++.|.++|.+|..
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 89999999999999999988888889999999999999988754 457888889999999998864
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-24 Score=204.20 Aligned_cols=196 Identities=17% Similarity=0.212 Sum_probs=150.3
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEeecccCc-ccccCCccccCCCCCCEEEccC-CcCcccCCCCccCCCCCcEEE
Q 037488 160 NLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQ-LEGSIPDDLCRLAALFQLDLGS-NKLSGFVPASFGNLTNLRSLH 237 (628)
Q Consensus 160 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 237 (628)
+|+.|++++|++++..+..|..+++|++|++++|+ ++...+..|.++++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67788888888876666677778888888888886 7766666777888888888887 788777777788888888888
Q ss_pred ccCCcCCcCCCCccCCCCCc---EEEcCCC-CCcCCCCCcccCCcccc-EEEcCCCcCCCCCccccCCCCCCCEEeCCCC
Q 037488 238 LGSNQITSIPSTLLNLKDIL---YLNLSSN-FFTGPLPLEIGNLKVLI-KIDLSMNNFSGVIPITIGYLKDLQYLFLEYN 312 (628)
Q Consensus 238 L~~n~l~~lp~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n 312 (628)
+++|+++.+|. +..+++|+ +|++++| .+++..+..|..+++|+ .|++++|.++...+..+.. ++|+.|++++|
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence 88888888776 66677777 8888888 78777777788888888 8888888887544445554 78888888888
Q ss_pred c-CcccCChhhcCC-CCCCEEECcCCcccccCchhhhcCCCCCEEEccCC
Q 037488 313 R-LQGSIPDSIGDL-INLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFN 360 (628)
Q Consensus 313 ~-~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N 360 (628)
+ +++..+..|..+ ++|+.|++++|.++++.+. .+.+|+.|+++++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 4 876667778888 8888888888888765543 5667888887765
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=220.61 Aligned_cols=194 Identities=19% Similarity=0.314 Sum_probs=137.5
Q ss_pred HHHhhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhc--ccCCCcceeeeeccCCC---
Q 037488 422 LFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKH--IRHRNLIKIISSCSNDD--- 496 (628)
Q Consensus 422 l~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~--- 496 (628)
.....++|...+.||+|+||.||+|+.. |+.||||++.... ...+.+|+++++. ++||||+++++++....
T Consensus 37 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~---~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~ 112 (342)
T 1b6c_B 37 QRTIARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTW 112 (342)
T ss_dssp HHHHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEECGGG---HHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSC
T ss_pred cccccccEEEEeeecCCCCcEEEEEEEc-CccEEEEEeCchh---HHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCcc
Confidence 3445678999999999999999999874 8999999996432 3457788888887 79999999998875542
Q ss_pred -cc-------------------------------------------------------------------------cccc
Q 037488 497 -FK-------------------------------------------------------------------------ADFG 502 (628)
Q Consensus 497 -~~-------------------------------------------------------------------------~DFG 502 (628)
.. +|||
T Consensus 113 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg 192 (342)
T 1b6c_B 113 TQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG 192 (342)
T ss_dssp CCEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCT
T ss_pred ceeEEEEeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECC
Confidence 00 3899
Q ss_pred ccccccccCccc--ccccccccccccCccccccC------ccCcccchhhHhHHHHHHhhC----------CCCCCcccC
Q 037488 503 MAKPLLKEDQSL--IQTQTLATIGYMAPEYGREG------RVSTNGDVYSFGIMLIETFTR----------KKPTDEIFS 564 (628)
Q Consensus 503 la~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~DVwS~Gvvl~e~ltg----------~~p~~~~~~ 564 (628)
+|+......... ......||+.|+|||++.+. .++.++|||||||++|||+|| +.||.....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~ 272 (342)
T 1b6c_B 193 LAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVP 272 (342)
T ss_dssp TCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSC
T ss_pred CceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCc
Confidence 887654332110 12345799999999998875 355799999999999999999 778866544
Q ss_pred CCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 565 GEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+.......... + ..+.. .....++..+.+++.+||+.||++|||+.||
T Consensus 273 ~~~~~~~~~~~~~~~~~~----~----~~~~~-~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i 327 (342)
T 1b6c_B 273 SDPSVEEMRKVVCEQKLR----P----NIPNR-WQSCEALRVMAKIMRECWYANGAARLTALRI 327 (342)
T ss_dssp SSCCHHHHHHHHTTSCCC----C----CCCGG-GGTSHHHHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred CcccHHHHHHHHHHHHhC----C----CCccc-ccchhHHHHHHHHHHHHhccChhhCCCHHHH
Confidence 444444433322211110 0 00000 0123567789999999999999999998764
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-25 Score=224.11 Aligned_cols=183 Identities=23% Similarity=0.373 Sum_probs=127.4
Q ss_pred hcCCCcccccccCCccEEEEEEec-C----CcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH-Y----GMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~-~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
...|...+.||+|+||.||+|... + +..||||+++... ......+.+|++++++++||||+++++++...+..
T Consensus 43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 122 (333)
T 1mqb_A 43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM 122 (333)
T ss_dssp TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE
Confidence 356777899999999999999863 2 3469999997543 34456789999999999999999999988654321
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+++.......
T Consensus 123 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~ 202 (333)
T 1mqb_A 123 IITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPE 202 (333)
T ss_dssp EEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC---------
T ss_pred EEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCcchhhccccc
Confidence 39999987543321
Q ss_pred c-cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 513 S-LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 513 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
. .......||+.|+|||++.+..++.++|||||||++|||++ |+.||..... .........
T Consensus 203 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~-----~~~~~~~~~------------ 265 (333)
T 1mqb_A 203 ATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN-----HEVMKAIND------------ 265 (333)
T ss_dssp --------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHHHT------------
T ss_pred cccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCH-----HHHHHHHHC------------
Confidence 1 11223357889999999999999999999999999999999 9999965321 111111000
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .....+..++.++.+++.+||+.||++||++.|+
T Consensus 266 ~---~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l 300 (333)
T 1mqb_A 266 G---FRLPTPMDCPSAIYQLMMQCWQQERARRPKFADI 300 (333)
T ss_dssp T---CCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred C---CcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 0 0111233456779999999999999999998753
|
| >4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-25 Score=222.60 Aligned_cols=188 Identities=18% Similarity=0.177 Sum_probs=131.2
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCC-Cc----
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSND-DF---- 497 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-~~---- 497 (628)
...++|...+.||+|+||.||+|+. .+++.||||++..... ...+.+|+++++.++|++++..+++|... +.
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv 83 (296)
T 4hgt_A 6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV 83 (296)
T ss_dssp -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEE
T ss_pred ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEE
Confidence 4467899999999999999999986 6799999998764322 24578899999999999888776655221 10
Q ss_pred -----------------------------------------------------------------cccccccccccccCc
Q 037488 498 -----------------------------------------------------------------KADFGMAKPLLKEDQ 512 (628)
Q Consensus 498 -----------------------------------------------------------------~~DFGla~~~~~~~~ 512 (628)
.+|||+|+.......
T Consensus 84 ~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~ 163 (296)
T 4hgt_A 84 MELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDART 163 (296)
T ss_dssp EECCCCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTT
T ss_pred EEccCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCccc
Confidence 049999987643322
Q ss_pred c-----cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCc--cHHHHHHhhcCCccceee
Q 037488 513 S-----LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEM--TLKHWVNDLLPISVMKVV 585 (628)
Q Consensus 513 ~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 585 (628)
. .......||+.|+|||++.+..++.++||||+||++|||++|+.||........ ..........+
T Consensus 164 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~------- 236 (296)
T 4hgt_A 164 HQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMS------- 236 (296)
T ss_dssp CCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHH-------
T ss_pred CccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhccccc-------
Confidence 1 112345799999999999999999999999999999999999999976433221 11111111000
Q ss_pred cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ........++.++.+++.+||+.||++|||++||
T Consensus 237 -----~---~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l 271 (296)
T 4hgt_A 237 -----T---PIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYL 271 (296)
T ss_dssp -----S---CHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHH
T ss_pred -----c---hhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHH
Confidence 0 0011112346779999999999999999998753
|
| >3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-25 Score=222.64 Aligned_cols=187 Identities=17% Similarity=0.168 Sum_probs=135.0
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCC-c-----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD-F----- 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~----- 497 (628)
..++|...+.||+|+||.||+|+. .+|+.||||++..... .+.+.+|+++++.++|++++..++++.... .
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 3uzp_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred eccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEE
Confidence 357899999999999999999997 6799999999865432 245789999999999998877665542111 0
Q ss_pred ----------------------------------------------------------------cccccccccccccCcc
Q 037488 498 ----------------------------------------------------------------KADFGMAKPLLKEDQS 513 (628)
Q Consensus 498 ----------------------------------------------------------------~~DFGla~~~~~~~~~ 513 (628)
.+|||+|+........
T Consensus 85 e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~ 164 (296)
T 3uzp_A 85 ELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH 164 (296)
T ss_dssp ECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTC
T ss_pred EecCCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccc
Confidence 0499999875433221
Q ss_pred -----cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCC--ccHHHHHHhhcCCccceeec
Q 037488 514 -----LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGE--MTLKHWVNDLLPISVMKVVD 586 (628)
Q Consensus 514 -----~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 586 (628)
.......||+.|+|||++.+..++.++|||||||++|||++|+.||....... ............
T Consensus 165 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~-------- 236 (296)
T 3uzp_A 165 QHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMS-------- 236 (296)
T ss_dssp CBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHH--------
T ss_pred cccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccC--------
Confidence 11234579999999999999999999999999999999999999997643221 111111111000
Q ss_pred ccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 587 AHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .....+..++.++.+++.+||+.||++|||+.||
T Consensus 237 ----~---~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 271 (296)
T 3uzp_A 237 ----T---PIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYL 271 (296)
T ss_dssp ----S---CHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHH
T ss_pred ----C---chHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHH
Confidence 0 0011223456779999999999999999998763
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.4e-25 Score=229.86 Aligned_cols=133 Identities=20% Similarity=0.202 Sum_probs=92.3
Q ss_pred CCCc-ccccccCCccEEEEEEec---CCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccC--CCc----
Q 037488 428 GFSE-NNLIDRGGIGYVYKRRIH---YGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSN--DDF---- 497 (628)
Q Consensus 428 ~~~~-~~~ig~G~~g~V~~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~---- 497 (628)
.|.. .+.||+|+||.||+|+.. +++.||||++..... ...+.+|++++++++|||||++++++.. +..
T Consensus 21 ~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv 98 (405)
T 3rgf_A 21 LFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI--SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLL 98 (405)
T ss_dssp HEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC--CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEE
T ss_pred hhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC--CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEE
Confidence 3554 457999999999999864 578999999975322 2457899999999999999999998732 110
Q ss_pred --------------------------------------------------------------------------cccccc
Q 037488 498 --------------------------------------------------------------------------KADFGM 503 (628)
Q Consensus 498 --------------------------------------------------------------------------~~DFGl 503 (628)
.+|||+
T Consensus 99 ~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~ 178 (405)
T 3rgf_A 99 FDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGF 178 (405)
T ss_dssp EECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEECCTTC
T ss_pred EeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEEECCC
Confidence 039999
Q ss_pred cccccccCc-ccccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcc
Q 037488 504 AKPLLKEDQ-SLIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEI 562 (628)
Q Consensus 504 a~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~ 562 (628)
|+....... .......+||++|+|||++.+. .|+.++||||+||++|||++|++||...
T Consensus 179 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 239 (405)
T 3rgf_A 179 ARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR 239 (405)
T ss_dssp CC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred ceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence 986543211 1122446799999999999874 5899999999999999999999999653
|
| >1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-25 Score=230.32 Aligned_cols=181 Identities=20% Similarity=0.284 Sum_probs=130.6
Q ss_pred hcCCCcccccccCCccEEEEEEe----cCCcEEEEEEeeccc----hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCC
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI----HYGMEVAVKVFDLQY----REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDD 496 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 496 (628)
.++|...+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|+++++++ +||||+++++++..+.
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 46789999999999999999987 368999999986432 22345577899999999 6999999998775432
Q ss_pred cc------------------------------------------------------------------cccccccccccc
Q 037488 497 FK------------------------------------------------------------------ADFGMAKPLLKE 510 (628)
Q Consensus 497 ~~------------------------------------------------------------------~DFGla~~~~~~ 510 (628)
.. +|||+|+.....
T Consensus 133 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~ 212 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVAD 212 (355)
T ss_dssp EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGG
T ss_pred eEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeCCCCeecccC
Confidence 11 499999865433
Q ss_pred CcccccccccccccccCccccccC--ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccc
Q 037488 511 DQSLIQTQTLATIGYMAPEYGREG--RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588 (628)
Q Consensus 511 ~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (628)
.. ......+||+.|+|||++.++ .++.++|||||||++|||++|+.||....... ....+.....
T Consensus 213 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~-~~~~~~~~~~----------- 279 (355)
T 1vzo_A 213 ET-ERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKN-SQAEISRRIL----------- 279 (355)
T ss_dssp GG-GGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCC-CHHHHHHHHH-----------
T ss_pred CC-CcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccc-hHHHHHHHHh-----------
Confidence 21 223446799999999999863 47899999999999999999999997532221 1222211110
Q ss_pred ccCCcccchhchhhhHHHHHHHhhcccCCCcccCCC
Q 037488 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVN 624 (628)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt 624 (628)
.. ....+..++..+.+++.+||+.||++||+
T Consensus 280 -~~----~~~~~~~~~~~~~~li~~~L~~dP~~R~~ 310 (355)
T 1vzo_A 280 -KS----EPPYPQEMSALAKDLIQRLLMKDPKKRLG 310 (355)
T ss_dssp -HC----CCCCCTTSCHHHHHHHHHHTCSSGGGSTT
T ss_pred -cc----CCCCCcccCHHHHHHHHHHhhhCHHHhcC
Confidence 00 11123345667999999999999999993
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-25 Score=231.30 Aligned_cols=182 Identities=19% Similarity=0.254 Sum_probs=123.8
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCc-------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDF------- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~------- 497 (628)
..+|...+.||+|+||+||.....+|+.||||++..... ..+.+|+++++++ +|||||++++++.++..
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~ 99 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIEL 99 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEEC
Confidence 345788899999999997665556799999999965322 2356899999999 89999999987654321
Q ss_pred ----------------------------------------------------------------cccccccccccccCc-
Q 037488 498 ----------------------------------------------------------------KADFGMAKPLLKEDQ- 512 (628)
Q Consensus 498 ----------------------------------------------------------------~~DFGla~~~~~~~~- 512 (628)
.+|||+|+.......
T Consensus 100 ~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~ 179 (432)
T 3p23_A 100 CAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHS 179 (432)
T ss_dssp CSEEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------
T ss_pred CCCCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcc
Confidence 149999987643321
Q ss_pred ccccccccccccccCccccc---cCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeeccc
Q 037488 513 SLIQTQTLATIGYMAPEYGR---EGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (628)
.......+||++|+|||++. +..++.++||||+||++|||+| |+.||...... ..... ....
T Consensus 180 ~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~---~~~~~---~~~~-------- 245 (432)
T 3p23_A 180 FSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQR---QANIL---LGAC-------- 245 (432)
T ss_dssp ------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTH---HHHHH---TTCC--------
T ss_pred eeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHH---HHHHH---hccC--------
Confidence 12234467999999999997 4567889999999999999999 99998542211 11110 0000
Q ss_pred ccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......+...+..+.+++.+||+.||++|||+.||
T Consensus 246 ----~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ev 281 (432)
T 3p23_A 246 ----SLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHV 281 (432)
T ss_dssp ----CCTTSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred ----CccccCccccccHHHHHHHHHHHhCCHhhCCCHHHH
Confidence 000001112345668999999999999999998763
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.3e-25 Score=229.75 Aligned_cols=182 Identities=21% Similarity=0.326 Sum_probs=124.8
Q ss_pred CCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCc---------
Q 037488 428 GFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDF--------- 497 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~--------- 497 (628)
.|...+.||+|+||+||.+...+|+.||||++.... .+.+.+|+++++++ +|||||++++++..++.
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~ 92 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF---CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN 92 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG---HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS
T ss_pred eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC
Confidence 345567899999999987666679999999986543 34578899999987 89999999887643221
Q ss_pred ----------------------------------------------------------------------------cccc
Q 037488 498 ----------------------------------------------------------------------------KADF 501 (628)
Q Consensus 498 ----------------------------------------------------------------------------~~DF 501 (628)
.+||
T Consensus 93 gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DF 172 (434)
T 2rio_A 93 LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDF 172 (434)
T ss_dssp EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCC
T ss_pred CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEccc
Confidence 1388
Q ss_pred cccccccccCccc--ccccccccccccCcccccc-------CccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHH
Q 037488 502 GMAKPLLKEDQSL--IQTQTLATIGYMAPEYGRE-------GRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKH 571 (628)
Q Consensus 502 Gla~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~-------~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~ 571 (628)
|+|+......... .....+||++|+|||++.+ ..++.++||||+||++|||+| |+.||.+..... ..
T Consensus 173 G~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~---~~ 249 (434)
T 2rio_A 173 GLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE---SN 249 (434)
T ss_dssp TTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH---HH
T ss_pred ccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH---HH
Confidence 8888654332111 1234579999999999876 568999999999999999999 999996532211 11
Q ss_pred HHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 572 WVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+....... .......+..++.++.+++.+||+.||++|||+.||
T Consensus 250 i~~~~~~~-------------~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ei 293 (434)
T 2rio_A 250 IIRGIFSL-------------DEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKV 293 (434)
T ss_dssp HHHTCCCC-------------CCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HhcCCCCc-------------ccccccccccchHHHHHHHHHHhhCChhhCCCHHHH
Confidence 11111000 000111223467789999999999999999998763
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=234.26 Aligned_cols=196 Identities=20% Similarity=0.264 Sum_probs=133.9
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccC------CCc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSN------DDF 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~~ 497 (628)
.++|...+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|++++++++|||||++++++.. ++.
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 37899999999999999999987 67999999998754 34456778999999999999999999887643 110
Q ss_pred ------------------------------------------------------------------------cccccccc
Q 037488 498 ------------------------------------------------------------------------KADFGMAK 505 (628)
Q Consensus 498 ------------------------------------------------------------------------~~DFGla~ 505 (628)
.+|||+|+
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~ 172 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAK 172 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCCCCC
T ss_pred EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEccccccc
Confidence 03899988
Q ss_pred cccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccce-e
Q 037488 506 PLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMK-V 584 (628)
Q Consensus 506 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~ 584 (628)
...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.... ....|........... .
T Consensus 173 ~~~~~~---~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~----~~~~~~~~i~~~~~~~~~ 245 (676)
T 3qa8_A 173 ELDQGE---LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNW----QPVQWHGKVREKSNEHIV 245 (676)
T ss_dssp BTTSCC---CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSC----HHHHSSTTCC------CC
T ss_pred cccccc---ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCccc----chhhhhhhhhcccchhhh
Confidence 654332 2245679999999999999999999999999999999999999996421 1111111110000000 0
Q ss_pred ecccccC------CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 585 VDAHLLS------QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 585 ~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+ ..+.........+.++.+++.+||+.||++|||+.|+
T Consensus 246 ~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~el 295 (676)
T 3qa8_A 246 VYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQN 295 (676)
T ss_dssp SCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTC
T ss_pred hhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHH
Confidence 0000000 0111112334578889999999999999999999874
|
| >2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-25 Score=227.79 Aligned_cols=188 Identities=9% Similarity=0.058 Sum_probs=130.5
Q ss_pred hcCCCcccccccCCccEEEEEEec---------CCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcce---------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH---------YGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIK--------- 487 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~---------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------- 487 (628)
.++|...+.||+|+||.||+|+.. .++.||||++... +.+.+|++++++++|||||+
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 367899999999999999999874 3789999998744 35788999999999999997
Q ss_pred ------eeeeccC-CCc---------------------------------------------------------------
Q 037488 488 ------IISSCSN-DDF--------------------------------------------------------------- 497 (628)
Q Consensus 488 ------l~~~~~~-~~~--------------------------------------------------------------- 497 (628)
+++++.. +..
T Consensus 116 ~~~i~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~~~ 195 (352)
T 2jii_A 116 LLAIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDPE 195 (352)
T ss_dssp TCSCCCCCEEEEETTTEEEEEEECCCEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEEEETT
T ss_pred ccCccchhhccccCCcEEEEEecCCCcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEEcCC
Confidence 3333322 100
Q ss_pred ------cccccccccccccCcc-----cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCC
Q 037488 498 ------KADFGMAKPLLKEDQS-----LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGE 566 (628)
Q Consensus 498 ------~~DFGla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~ 566 (628)
.+|||+|+........ .......||+.|+|||++.+..++.++|||||||++|||++|+.||....+..
T Consensus 196 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~ 275 (352)
T 2jii_A 196 DQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNT 275 (352)
T ss_dssp EEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCH
T ss_pred CCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCH
Confidence 0499999876433211 11133479999999999999999999999999999999999999998654332
Q ss_pred ccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 567 MTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
............ ......+. ...+..++.++.+++.+||+.||++|||+.||
T Consensus 276 ~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 327 (352)
T 2jii_A 276 EDIMKQKQKFVD-KPGPFVGP---------CGHWIRPSETLQKYLKVVMALTYEEKPPYAML 327 (352)
T ss_dssp HHHHHHHHHHHH-SCCCEECT---------TSCEECCCHHHHHHHHHHHTCCTTCCCCHHHH
T ss_pred HHHHHHHHhccC-Chhhhhhh---------ccccCCCcHHHHHHHHHHHhCChhhCCCHHHH
Confidence 222222211100 00011110 01112346679999999999999999998763
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.6e-25 Score=220.76 Aligned_cols=183 Identities=18% Similarity=0.204 Sum_probs=116.4
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
.++|...+.||+|+||.||+|+. .+|+.||||++.... ....+.+.++..+++.++||||+++++++..++..
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 46788889999999999999997 579999999997543 22233445556678888999999999987654321
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+++...... .
T Consensus 104 e~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~---~ 180 (318)
T 2dyl_A 104 ELMGTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDK---A 180 (318)
T ss_dssp CCCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTTC-----------
T ss_pred eccCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCc---c
Confidence 3899887653322 1
Q ss_pred cccccccccccCccccc-----cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 516 QTQTLATIGYMAPEYGR-----EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~-----~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
.....||+.|+|||++. +..++.++|||||||++|||++|+.||..................
T Consensus 181 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~------------- 247 (318)
T 2dyl_A 181 KDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEP------------- 247 (318)
T ss_dssp ------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCC-------------
T ss_pred ccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCC-------------
Confidence 23457999999999984 456899999999999999999999999753221111111111000
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+....++.++.+++.+||+.||++|||+.|+
T Consensus 248 ----~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 281 (318)
T 2dyl_A 248 ----PLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKL 281 (318)
T ss_dssp ----CCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHH
T ss_pred ----CCCCccCCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 0001112345679999999999999999998753
|
| >1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-24 Score=226.72 Aligned_cols=197 Identities=18% Similarity=0.113 Sum_probs=133.8
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhccc--------CCCcceeeeecc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIR--------HRNLIKIISSCS--- 493 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~l~~~~~--- 493 (628)
.++|...+.||+|+||.||+|+. .+++.||||+++.. ....+.+.+|+++++.++ ||||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 46799999999999999999986 67899999999743 334567889999999996 788999988764
Q ss_pred -CCCc---------------------------------------------------------------------------
Q 037488 494 -NDDF--------------------------------------------------------------------------- 497 (628)
Q Consensus 494 -~~~~--------------------------------------------------------------------------- 497 (628)
.+..
T Consensus 115 ~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~~~~~~~~~~~ 194 (397)
T 1wak_A 115 VNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEA 194 (397)
T ss_dssp TTEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCHHHHHHHHHHH
T ss_pred CCCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccchhhhhhhhhh
Confidence 1100
Q ss_pred ------------------------------------------cccccccccccccCcccccccccccccccCccccccCc
Q 037488 498 ------------------------------------------KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535 (628)
Q Consensus 498 ------------------------------------------~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~ 535 (628)
.+|||+|+..... ....+||+.|+|||++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~ 269 (397)
T 1wak_A 195 TEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQYRSLEVLIGSG 269 (397)
T ss_dssp C---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGGCCHHHHHTSC
T ss_pred HHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCCcccCChhhcCCC
Confidence 0255555543211 23457999999999999999
Q ss_pred cCcccchhhHhHHHHHHhhCCCCCCcccCCCcc----HHHHHHhhcCCccce----------eeccc--cc---------
Q 037488 536 VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMT----LKHWVNDLLPISVMK----------VVDAH--LL--------- 590 (628)
Q Consensus 536 ~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~----~~~~~~~~~~~~~~~----------~~~~~--~~--------- 590 (628)
|+.++||||+||++|||+||+.||......... ............... ..... ..
T Consensus 270 ~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (397)
T 1wak_A 270 YNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWG 349 (397)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCC
T ss_pred CCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcc
Confidence 999999999999999999999999764332211 011111110000000 00000 00
Q ss_pred --CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 591 --SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 591 --~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.........+...+.++.+|+.+||+.||++|||+.||
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~ 389 (397)
T 1wak_A 350 LFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAEC 389 (397)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHH
T ss_pred hhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHH
Confidence 00000112334567889999999999999999998764
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-25 Score=226.35 Aligned_cols=186 Identities=12% Similarity=0.068 Sum_probs=120.7
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcc--cCCCcceeee-------ec
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHI--RHRNLIKIIS-------SC 492 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l--~h~niv~l~~-------~~ 492 (628)
...|...+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|+.+++.+ +|||||+++. ++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 34588889999999999999997 579999999997643 23456677885544444 6999877431 11
Q ss_pred cC-----------------------------CC----------------c------------------------------
Q 037488 493 SN-----------------------------DD----------------F------------------------------ 497 (628)
Q Consensus 493 ~~-----------------------------~~----------------~------------------------------ 497 (628)
.. ++ .
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHrDi 220 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHF 220 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEETTC
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccCcC
Confidence 00 00 0
Q ss_pred --------------cccccccccccccCcccccccccccccccCcccccc--CccCcccchhhHhHHHHHHhhCCCCCCc
Q 037488 498 --------------KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGRE--GRVSTNGDVYSFGIMLIETFTRKKPTDE 561 (628)
Q Consensus 498 --------------~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DVwS~Gvvl~e~ltg~~p~~~ 561 (628)
.+|||+|+..... .....||+.|+|||++.+ ..|+.++|||||||++|||+||+.||..
T Consensus 221 kp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~ 295 (371)
T 3q60_A 221 TPDNLFIMPDGRLMLGDVSALWKVGTR-----GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGL 295 (371)
T ss_dssp SGGGEEECTTSCEEECCGGGEEETTCE-----EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTB
T ss_pred CHHHEEECCCCCEEEEecceeeecCCC-----ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCC
Confidence 0499999865321 124567899999999987 6799999999999999999999999986
Q ss_pred ccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 562 IFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+.... ..... ..............+..++.++.+++.+||+.||++|||+.|+
T Consensus 296 ~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~ 350 (371)
T 3q60_A 296 VTPGIKG-----------SWKRP-SLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEA 350 (371)
T ss_dssp CCTTCTT-----------CCCBC-CTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHH
T ss_pred cCccccc-----------chhhh-hhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 5332110 00000 0000011111122233567789999999999999999998653
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-24 Score=221.81 Aligned_cols=194 Identities=15% Similarity=0.185 Sum_probs=133.2
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhH-----------------HHHHHHHHHHhhcccCCCccee
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREA-----------------FKNFDIECDMMKHIRHRNLIKI 488 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-----------------~~~~~~E~~~l~~l~h~niv~l 488 (628)
.++|...+.||+|+||.||+|+. +|+.||||++....... .+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46899999999999999999998 89999999997532211 1778999999999999999999
Q ss_pred eeeccCCCcc----------------------------------------------------------------------
Q 037488 489 ISSCSNDDFK---------------------------------------------------------------------- 498 (628)
Q Consensus 489 ~~~~~~~~~~---------------------------------------------------------------------- 498 (628)
++++.+++..
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~~~ 188 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKN 188 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEECTT
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEcCC
Confidence 8876432110
Q ss_pred -----ccccccccccccCcccccccccccccccCccccccC-ccCc-ccchhhHhHHHHHHhhCCCCCCcccCCCccHHH
Q 037488 499 -----ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREG-RVST-NGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKH 571 (628)
Q Consensus 499 -----~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~ 571 (628)
+|||+++..... ......||+.|+|||++.+. .++. ++||||+||++|||++|+.||....... ....
T Consensus 189 ~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~ 263 (348)
T 2pml_X 189 GRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLV-ELFN 263 (348)
T ss_dssp SCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSH-HHHH
T ss_pred CcEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHH-HHHH
Confidence 388887754322 22445799999999999887 6776 9999999999999999999997543211 1111
Q ss_pred HHHhh-cCCc--cceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 572 WVNDL-LPIS--VMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 572 ~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..... .+.. ......+.. .......+..++.++.+++.+||+.||++|||+.|+
T Consensus 264 ~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~ 320 (348)
T 2pml_X 264 NIRTKNIEYPLDRNHFLYPLT---NKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDA 320 (348)
T ss_dssp HHTSCCCCCCCSSSSSTTTTC---C--------CCCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred HHhccCcCCccchhhhhcccc---ccccccchhhcCHHHHHHHHHHccCChhhCCCHHHH
Confidence 11110 0000 000000000 000001113456789999999999999999998763
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-25 Score=223.59 Aligned_cols=201 Identities=21% Similarity=0.233 Sum_probs=124.9
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeecc------------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCS------------ 493 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~------------ 493 (628)
.++|...+.||+|+||.||+|+. +++.||||++....... ....+|+..+..++||||+++++++.
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~-~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~l 89 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQN-FINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLL 89 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGGHHH-HHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEE
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccchhh-HHHHHHHHHHHhccCcchhhheecccccccCCCceEEE
Confidence 46888999999999999999976 58999999997543322 11234445556689999999986321
Q ss_pred ------CCCc-------------------------------------------------------------ccccccccc
Q 037488 494 ------NDDF-------------------------------------------------------------KADFGMAKP 506 (628)
Q Consensus 494 ------~~~~-------------------------------------------------------------~~DFGla~~ 506 (628)
.++. .+|||+|+.
T Consensus 90 v~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~ 169 (336)
T 3g2f_A 90 VMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMR 169 (336)
T ss_dssp EECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEE
T ss_pred EEecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccceee
Confidence 1000 049999986
Q ss_pred ccccCc------ccccccccccccccCcccccc-------CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHH
Q 037488 507 LLKEDQ------SLIQTQTLATIGYMAPEYGRE-------GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWV 573 (628)
Q Consensus 507 ~~~~~~------~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~ 573 (628)
+..... .......+||+.|+|||++.+ ..++.++|||||||++|||++|+.|+............+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~ 249 (336)
T 3g2f_A 170 LTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQ 249 (336)
T ss_dssp CSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTH
T ss_pred cccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhh
Confidence 543211 112234579999999999987 4678899999999999999999777543221111000000
Q ss_pred HhhcCCccce-----eecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 574 NDLLPISVMK-----VVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 574 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......... +.........+........++.++.+++.+||+.||++|||+.||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~ 309 (336)
T 3g2f_A 250 TEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXA 309 (336)
T ss_dssp HHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred cccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHH
Confidence 0000000000 000000111111112223467789999999999999999998764
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-25 Score=218.11 Aligned_cols=174 Identities=17% Similarity=0.123 Sum_probs=129.6
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~--- 498 (628)
.++|...+.||+|+||.||+|.. .+++.||||+++.. .......+.+|+..+..+ +||||+++++++.+++..
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv 89 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ 89 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence 46788999999999999999987 57999999999753 233456788999999999 999999999987543211
Q ss_pred --------------------------------------------------------------------------------
Q 037488 499 -------------------------------------------------------------------------------- 498 (628)
Q Consensus 499 -------------------------------------------------------------------------------- 498 (628)
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~ 169 (289)
T 1x8b_A 90 NEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASN 169 (289)
T ss_dssp EECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC--------------------
T ss_pred EEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccccCC
Confidence
Q ss_pred ------ccccccccccccCcccccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHH
Q 037488 499 ------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKH 571 (628)
Q Consensus 499 ------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~ 571 (628)
+|||.++..... ....||+.|+|||++.+. .++.++||||+||++|||++|++|+... .....
T Consensus 170 ~~~~kl~Dfg~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~----~~~~~ 239 (289)
T 1x8b_A 170 KVMFKIGDLGHVTRISSP------QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG----DQWHE 239 (289)
T ss_dssp CCCEEECCCTTCEETTCS------CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS----HHHHH
T ss_pred ceEEEEcccccccccCCc------cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch----hHHHH
Confidence 267766654221 234699999999999876 5778999999999999999999876431 11111
Q ss_pred HHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 572 WVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..... ....+..++.++.+++.+||+.||++|||+.|+
T Consensus 240 ~~~~~-------------------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l 277 (289)
T 1x8b_A 240 IRQGR-------------------LPRIPQVLSQEFTELLKVMIHPDPERRPSAMAL 277 (289)
T ss_dssp HHTTC-------------------CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHcCC-------------------CCCCCcccCHHHHHHHHHHhCCCcccCCCHHHH
Confidence 11100 011223456679999999999999999998763
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=201.43 Aligned_cols=195 Identities=18% Similarity=0.220 Sum_probs=86.4
Q ss_pred CCCEEeccCCcccccCccccCCCCCCCEEEccCcc-ccCCCCCCcccccccCCCCCcEEEccc-CCCCCCCchHHhcccc
Q 037488 58 KLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNY-LTSSTPKLNFLSSLSNCKYLKYFSFSN-NSLDGILPRAIGNLSQ 135 (628)
Q Consensus 58 ~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~ 135 (628)
+|+.|++++|+++++.+.+|.++++|+.|++++|. ++.+++ ..|.++++|++|++++ |.++++.+..|..++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-----~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~- 105 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-----HSFYNLSKVTHIEIRNTRNLTYIDPDALKELP- 105 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT-----TTEESCTTCCEEEEEEETTCCEECTTSEECCT-
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH-----hHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC-
Confidence 45555555555555554455555555555555554 444332 1244555555555554 444432222211111
Q ss_pred ccceeeccCCcccccCCccccCCCCCC---EEEccCC-cCCccccccccCCCCCC-EeecccCcccccCCccccCCCCCC
Q 037488 136 SMEIFWMHSCNISGGIPEEISNLTNLI---AIYLGGN-KLNGSIPIALGKLQKLQ-LLNLEYNQLEGSIPDDLCRLAALF 210 (628)
Q Consensus 136 ~l~~l~l~~n~~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~ 210 (628)
.|+.|++++|.+++ +|. |..+++|+ .|++++| .+.+..+..|..+++|+ +|++++|+++...+..+.. ++|+
T Consensus 106 ~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~ 182 (239)
T 2xwt_C 106 LLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLD 182 (239)
T ss_dssp TCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEE
T ss_pred CCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCC
Confidence 11111111111111 111 23333333 5555555 55444444455555555 5555555554322222222 4555
Q ss_pred EEEccCCc-CcccCCCCccCC-CCCcEEEccCCcCCcCCCCccCCCCCcEEEcCC
Q 037488 211 QLDLGSNK-LSGFVPASFGNL-TNLRSLHLGSNQITSIPSTLLNLKDILYLNLSS 263 (628)
Q Consensus 211 ~L~L~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~ 263 (628)
.|++++|+ ++...+..|..+ ++|+.|++++|+++.+|.. .+++|+.|++++
T Consensus 183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARN 235 (239)
T ss_dssp EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTT
T ss_pred EEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccC
Confidence 55555553 554444455555 5555555555555555443 334444444444
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-25 Score=224.97 Aligned_cols=186 Identities=22% Similarity=0.289 Sum_probs=128.7
Q ss_pred HHHHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCC--
Q 037488 421 ELFQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDD-- 496 (628)
Q Consensus 421 ~l~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~-- 496 (628)
++....+.|...+.||+|+||.||+|+. .+|+.||||++..... ..+.+.+|+.+++++ +||||+++++++....
T Consensus 18 ~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~ 96 (326)
T 2x7f_A 18 ALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP 96 (326)
T ss_dssp CCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--
T ss_pred hccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCc
Confidence 3345578899999999999999999997 6799999999975432 346688999999999 8999999999875321
Q ss_pred ----cc--------------------------------------------------------------------cccccc
Q 037488 497 ----FK--------------------------------------------------------------------ADFGMA 504 (628)
Q Consensus 497 ----~~--------------------------------------------------------------------~DFGla 504 (628)
.. +|||++
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~ 176 (326)
T 2x7f_A 97 GMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVS 176 (326)
T ss_dssp CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCTTT
T ss_pred cccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEEEeeCcCc
Confidence 00 399998
Q ss_pred ccccccCcccccccccccccccCccccc-----cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC
Q 037488 505 KPLLKEDQSLIQTQTLATIGYMAPEYGR-----EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI 579 (628)
Q Consensus 505 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~ 579 (628)
+...... .......||+.|+|||++. +..++.++||||+||++|||++|+.||....... ........ +
T Consensus 177 ~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~~--~- 250 (326)
T 2x7f_A 177 AQLDRTV--GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMR-ALFLIPRN--P- 250 (326)
T ss_dssp C---------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHS--C-
T ss_pred eecCcCc--cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHH-HHHHhhcC--c-
Confidence 8653221 1123457999999999987 5678999999999999999999999996532111 00000000 0
Q ss_pred ccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 580 SVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+ ...+..++.++.+++.+||+.||++|||+.|+
T Consensus 251 ------~~---------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 284 (326)
T 2x7f_A 251 ------AP---------RLKSKKWSKKFQSFIESCLVKNHSQRPATEQL 284 (326)
T ss_dssp ------CC---------CCSCSCSCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred ------cc---------cCCccccCHHHHHHHHHHhccChhhCCCHHHH
Confidence 00 00112345679999999999999999998753
|
| >2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.3e-25 Score=226.23 Aligned_cols=132 Identities=20% Similarity=0.217 Sum_probs=105.5
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhccc-CC-----CcceeeeeccCCCc
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIR-HR-----NLIKIISSCSNDDF 497 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~l~~~~~~~~~ 497 (628)
..++|...+.||+|+||.||+|+. .+++.||||+++... .....+.+|+++++.++ |+ +|+++++++..++.
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~ 130 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH 130 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence 357899999999999999999987 578999999997432 33566788999988885 55 38888776543211
Q ss_pred -----------------------------------------------------------------------ccccccccc
Q 037488 498 -----------------------------------------------------------------------KADFGMAKP 506 (628)
Q Consensus 498 -----------------------------------------------------------------------~~DFGla~~ 506 (628)
.+|||+|+.
T Consensus 131 ~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~ 210 (382)
T 2vx3_A 131 LCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQ 210 (382)
T ss_dssp EEEEEECCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTTCEE
T ss_pred eEEEEecCCCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccCcee
Confidence 049999886
Q ss_pred ccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcc
Q 037488 507 LLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEI 562 (628)
Q Consensus 507 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~ 562 (628)
.... ....+||+.|+|||++.+..|+.++|||||||++|||+||++||...
T Consensus 211 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~ 261 (382)
T 2vx3_A 211 LGQR-----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA 261 (382)
T ss_dssp TTCC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cccc-----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 5322 23567999999999999999999999999999999999999999753
|
| >1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.6e-25 Score=226.00 Aligned_cols=197 Identities=13% Similarity=0.124 Sum_probs=133.6
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhccc-----------CCCcceeeeecc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIR-----------HRNLIKIISSCS 493 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~l~~~~~ 493 (628)
.++|...+.||+|+||.||+|+. .+++.||||++.... ...+.+.+|++++++++ ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 46789999999999999999987 679999999997432 34466789999999887 899999988764
Q ss_pred CCC----c------------------------------------------------------------------------
Q 037488 494 NDD----F------------------------------------------------------------------------ 497 (628)
Q Consensus 494 ~~~----~------------------------------------------------------------------------ 497 (628)
... .
T Consensus 97 ~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~ 176 (373)
T 1q8y_A 97 HKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQ 176 (373)
T ss_dssp EEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEE
T ss_pred ccCCCCceEEEEEecCCCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcce
Confidence 321 0
Q ss_pred --cccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCC-----ccHH
Q 037488 498 --KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGE-----MTLK 570 (628)
Q Consensus 498 --~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~-----~~~~ 570 (628)
.+|||+|+..... ....+||+.|+|||++.+..++.++||||+||++|||+||+.||....... ..+.
T Consensus 177 ~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~ 251 (373)
T 1q8y_A 177 IKIADLGNACWYDEH-----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIA 251 (373)
T ss_dssp EEECCCTTCEETTBC-----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHH
T ss_pred EEEcccccccccCCC-----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHH
Confidence 0388888754322 234579999999999999999999999999999999999999997543211 1111
Q ss_pred HHHHhhc--CCc-----------------cceeecccc---cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 571 HWVNDLL--PIS-----------------VMKVVDAHL---LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 571 ~~~~~~~--~~~-----------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....... +.. ...+..... ..........+..++.++.+|+.+||+.||++|||+.||
T Consensus 252 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el 331 (373)
T 1q8y_A 252 QIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGL 331 (373)
T ss_dssp HHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHH
T ss_pred HHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHH
Confidence 1111100 000 000000000 000001112345678889999999999999999998764
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-25 Score=222.32 Aligned_cols=179 Identities=25% Similarity=0.388 Sum_probs=127.6
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcE--EEEEEeecc-chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGME--VAVKVFDLQ-YREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDF---- 497 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~--vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~---- 497 (628)
++|...+.||+|+||.||+|+. .+|+. ||||+++.. .....+.+.+|+++++++ +||||+++++++..++.
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 6788889999999999999987 55665 499998753 233456788999999999 99999999987643210
Q ss_pred ----------------------------------c--------------------------------------------c
Q 037488 498 ----------------------------------K--------------------------------------------A 499 (628)
Q Consensus 498 ----------------------------------~--------------------------------------------~ 499 (628)
. +
T Consensus 105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kL~ 184 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIA 184 (327)
T ss_dssp ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEEC
T ss_pred EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEcCCCeEEEc
Confidence 0 3
Q ss_pred cccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcC
Q 037488 500 DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLP 578 (628)
Q Consensus 500 DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~ 578 (628)
|||+++...... ......+|+.|+|||++.+..++.++||||+||++|||+| |+.||..... .........
T Consensus 185 Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~-----~~~~~~~~~ 256 (327)
T 1fvr_A 185 DFGLSRGQEVYV---KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-----AELYEKLPQ 256 (327)
T ss_dssp CTTCEESSCEEC---CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHGGG
T ss_pred ccCcCccccccc---cccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcH-----HHHHHHhhc
Confidence 999887432221 1233458899999999998899999999999999999998 9999965321 111111100
Q ss_pred CccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 579 ISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .....+..++.++.+++.+||+.||++|||+.|+
T Consensus 257 ------------~---~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el 291 (327)
T 1fvr_A 257 ------------G---YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQI 291 (327)
T ss_dssp ------------T---CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ------------C---CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 0 0112233456779999999999999999998753
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.2e-25 Score=240.59 Aligned_cols=183 Identities=20% Similarity=0.316 Sum_probs=133.5
Q ss_pred hhcCCCcccccccCCccEEEEEEec----CCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIH----YGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
..++|...+.||+|+||.||+|... .+..||||+++.. .....+.+.+|+.++++++|||||++++++.++...
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~l 467 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWI 467 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEE
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCceEE
Confidence 3567888999999999999999863 2567999998753 334457799999999999999999999988653321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+.......
T Consensus 468 v~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~- 546 (656)
T 2j0j_A 468 IMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY- 546 (656)
T ss_dssp EEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC----
T ss_pred EEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCCCeecCCCcc-
Confidence 49999987643321
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
.......||+.|||||++.+..|+.++|||||||++|||++ |+.||.+.... ........ .
T Consensus 547 ~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~--~~~~~i~~---------------~- 608 (656)
T 2j0j_A 547 YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIGRIEN---------------G- 608 (656)
T ss_dssp -------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHH---------------T-
T ss_pred eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHH--HHHHHHHc---------------C-
Confidence 12233468899999999998999999999999999999997 99999753211 11111110 0
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..++.++.+++.+||+.||++|||+.||
T Consensus 609 --~~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el 642 (656)
T 2j0j_A 609 --ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL 642 (656)
T ss_dssp --CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred --CCCCCCccccHHHHHHHHHHcCCChhHCcCHHHH
Confidence 0112334567789999999999999999998763
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-25 Score=223.58 Aligned_cols=175 Identities=21% Similarity=0.270 Sum_probs=132.2
Q ss_pred HHhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch------hHHHHHHHHHHHhhccc--CCCcceeeeecc
Q 037488 423 FQATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR------EAFKNFDIECDMMKHIR--HRNLIKIISSCS 493 (628)
Q Consensus 423 ~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~--h~niv~l~~~~~ 493 (628)
....++|...+.||+|+||.||+|.. .+++.||||+++.... ...+.+.+|+.++++++ ||||+++++++.
T Consensus 39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~ 118 (320)
T 3a99_A 39 EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFE 118 (320)
T ss_dssp -CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEE
T ss_pred CCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEe
Confidence 34467899999999999999999986 6799999999975432 12345678999999996 599999999876
Q ss_pred CCCcc--------------------------------------------------------------------ccccccc
Q 037488 494 NDDFK--------------------------------------------------------------------ADFGMAK 505 (628)
Q Consensus 494 ~~~~~--------------------------------------------------------------------~DFGla~ 505 (628)
.++.. +|||+++
T Consensus 119 ~~~~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~ 198 (320)
T 3a99_A 119 RPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGA 198 (320)
T ss_dssp CSSEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred cCCcEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeCcccc
Confidence 53311 3999998
Q ss_pred cccccCcccccccccccccccCccccccCcc-CcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcccee
Q 037488 506 PLLKEDQSLIQTQTLATIGYMAPEYGREGRV-STNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKV 584 (628)
Q Consensus 506 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (628)
...... .....||+.|+|||++.+..+ +.++|||||||++|||++|+.||.... .....
T Consensus 199 ~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~-------~~~~~--------- 258 (320)
T 3a99_A 199 LLKDTV----YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-------EIIRG--------- 258 (320)
T ss_dssp ECCSSC----BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------HHHHC---------
T ss_pred cccccc----ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh-------hhhcc---------
Confidence 654321 234579999999999987776 788999999999999999999996421 01000
Q ss_pred ecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 585 VDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ...+..++.++.+++.+||+.||++|||+.||
T Consensus 259 ---~--------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l 291 (320)
T 3a99_A 259 ---Q--------VFFRQRVSSECQHLIRWCLALRPSDRPTFEEI 291 (320)
T ss_dssp ---C--------CCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ---c--------ccccccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 0 01122345679999999999999999998763
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-25 Score=218.95 Aligned_cols=171 Identities=25% Similarity=0.372 Sum_probs=129.4
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccC----------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSN---------- 494 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~---------- 494 (628)
.++|...+.||+|+||.||+|+. .+|+.||||+++... ..+.+|++++++++||||+++++++..
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 85 (284)
T 2a19_B 10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK 85 (284)
T ss_dssp HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence 45688899999999999999997 479999999997543 246789999999999999999887532
Q ss_pred -------------------CCcc-------------------------------------------------------cc
Q 037488 495 -------------------DDFK-------------------------------------------------------AD 500 (628)
Q Consensus 495 -------------------~~~~-------------------------------------------------------~D 500 (628)
+... +|
T Consensus 86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~D 165 (284)
T 2a19_B 86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGD 165 (284)
T ss_dssp ---CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECC
T ss_pred cccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCCCEEECc
Confidence 0000 39
Q ss_pred ccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc
Q 037488 501 FGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS 580 (628)
Q Consensus 501 FGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~ 580 (628)
||+++...... ......||+.|+|||++.+..++.++||||+||++|||++|+.|+.... .+.....
T Consensus 166 fg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~-------~~~~~~~--- 232 (284)
T 2a19_B 166 FGLVTSLKNDG---KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETS-------KFFTDLR--- 232 (284)
T ss_dssp CTTCEESSCCS---CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHH-------HHHHHHH---
T ss_pred chhheeccccc---cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHH-------HHHHHhh---
Confidence 99998764432 1234579999999999999999999999999999999999998874310 0110000
Q ss_pred cceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 581 VMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. ..+..++.++.+++.+||+.||++|||+.|+
T Consensus 233 -----~~----------~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~ 265 (284)
T 2a19_B 233 -----DG----------IISDIFDKKEKTLLQKLLSKKPEDRPNTSEI 265 (284)
T ss_dssp -----TT----------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred -----cc----------cccccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 00 0112235568999999999999999998763
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-25 Score=242.80 Aligned_cols=358 Identities=14% Similarity=0.039 Sum_probs=243.3
Q ss_pred CcccCCCcccCCChhccCC--CCCCEEecCccC-------------CCCCCEEEccCCcceec----CCccccCCCCCCE
Q 037488 1 MAFSFNKLVGVVPTTIFNV--STLNSLYLQNVQ-------------LQNLEELLLWGNNFSGT----IPSFIFNASKLSR 61 (628)
Q Consensus 1 l~ls~N~l~~~~p~~~~~l--~~L~~L~l~~n~-------------l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~ 61 (628)
|+|++|.+++..+..+... .+|++|++++|. +++|++|+|++|.+++. ++..+.++++|+.
T Consensus 117 L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~ 196 (592)
T 3ogk_B 117 VHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEV 196 (592)
T ss_dssp EEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCE
T ss_pred EEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccE
Confidence 4677777776666666553 348888887663 56788888888877654 2334456777777
Q ss_pred EeccCCcccccC----ccccCCCCCCCEEEccCccccCCCC---------------------CCcccccccCCCCCcEEE
Q 037488 62 LELQMNSFYGFI----PNTFGNLRNLNRLGLNDNYLTSSTP---------------------KLNFLSSLSNCKYLKYFS 116 (628)
Q Consensus 62 L~L~~N~l~~~~----~~~f~~l~~L~~L~L~~N~l~~~~~---------------------~~~~~~~~~~l~~L~~L~ 116 (628)
|++++|.++++. +..+.++++|+.|++++|.+..++. .......+..+++|+.|+
T Consensus 197 L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ 276 (592)
T 3ogk_B 197 LNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276 (592)
T ss_dssp EECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEE
T ss_pred EEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccC
Confidence 777777776332 3344567777777777776544210 001123455667777777
Q ss_pred cccCCCCCCCchHHhccccccceeeccCCcccccCC-ccccCCCCCCEEEccCCcCCccccccccCCCCCCEeeccc---
Q 037488 117 FSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIP-EEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEY--- 192 (628)
Q Consensus 117 l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~--- 192 (628)
++++.. ..+|..+..++ .|+.|++++|.++.... ..+..+++|+.|+++++-..+.++.....+++|++|++++
T Consensus 277 l~~~~~-~~l~~~~~~~~-~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~ 354 (592)
T 3ogk_B 277 LSYMGP-NEMPILFPFAA-QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGAD 354 (592)
T ss_dssp ETTCCT-TTGGGGGGGGG-GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCC
T ss_pred ccccch-hHHHHHHhhcC-CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcc
Confidence 776533 34566565554 79999999998765433 3467899999999984433333444456789999999993
Q ss_pred --------Cccccc-CCccccCCCCCCEEEccCCcCcccCCCCccC-CCCCcEEEcc----CCcCCcCCCC------ccC
Q 037488 193 --------NQLEGS-IPDDLCRLAALFQLDLGSNKLSGFVPASFGN-LTNLRSLHLG----SNQITSIPST------LLN 252 (628)
Q Consensus 193 --------n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~lp~~------~~~ 252 (628)
|.+++. ++..+..+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.++..|.. +..
T Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~ 434 (592)
T 3ogk_B 355 EQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG 434 (592)
T ss_dssp SSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH
T ss_pred ccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh
Confidence 555532 1222456899999999999998766556655 8899999996 7788875532 556
Q ss_pred CCCCcEEEcCCCC--CcCCCCCcc-cCCccccEEEcCCCcCCC-CCccccCCCCCCCEEeCCCCcCccc-CChhhcCCCC
Q 037488 253 LKDILYLNLSSNF--FTGPLPLEI-GNLKVLIKIDLSMNNFSG-VIPITIGYLKDLQYLFLEYNRLQGS-IPDSIGDLIN 327 (628)
Q Consensus 253 l~~L~~L~l~~n~--l~~~~~~~~-~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~ 327 (628)
+++|++|++++|. +++.....+ ..+++|+.|++++|.+++ .++..+..+++|++|++++|.++.. ++..+..+++
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 514 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS 514 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCc
Confidence 8999999997643 443333333 347889999999999875 3455567889999999999998654 3445567899
Q ss_pred CCEEECcCCcccccCchhh-hcCCCCCEEEccCC
Q 037488 328 LKSLDLSNNNLSGIIPISL-EKLLDLKDINVSFN 360 (628)
Q Consensus 328 L~~L~l~~N~l~~~~~~~~-~~l~~L~~l~l~~N 360 (628)
|+.|++++|+++......+ ..++.+....+..+
T Consensus 515 L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 515 LRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 9999999999886533333 35566655555444
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-24 Score=216.65 Aligned_cols=183 Identities=19% Similarity=0.224 Sum_probs=124.5
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCC--------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD-------- 496 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-------- 496 (628)
.++|+..+.||+|+||.||+|+. .+|+.||||++... ....+.+.+|++++++++||||+++++++.+..
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA 83 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence 46788999999999999999997 57999999999653 344577899999999999999999988753210
Q ss_pred ------------------cc------------------------------------------------------cccccc
Q 037488 497 ------------------FK------------------------------------------------------ADFGMA 504 (628)
Q Consensus 497 ------------------~~------------------------------------------------------~DFGla 504 (628)
.. +|||++
T Consensus 84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~ 163 (303)
T 1zy4_A 84 VKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLA 163 (303)
T ss_dssp --CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCCC
T ss_pred cccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEEEeeCcch
Confidence 00 399999
Q ss_pred ccccccCc------------ccccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHH
Q 037488 505 KPLLKEDQ------------SLIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKH 571 (628)
Q Consensus 505 ~~~~~~~~------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~ 571 (628)
+....... ........||+.|+|||++.+. .++.++||||+||++|||++ ||.... ....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~----~~~~ 236 (303)
T 1zy4_A 164 KNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGM----ERVN 236 (303)
T ss_dssp SCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHH----HHHH
T ss_pred hhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCch----hHHH
Confidence 86532110 1122345699999999999864 68999999999999999998 553211 1111
Q ss_pred HHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 572 WVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....... .........+..++..+.+++.+||+.||++|||+.|+
T Consensus 237 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l 281 (303)
T 1zy4_A 237 ILKKLRS------------VSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTL 281 (303)
T ss_dssp HHHHHHS------------TTCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHHhccc------------cccccCccccccchHHHHHHHHHHHhcCcccCcCHHHH
Confidence 1111100 00011112233456678999999999999999998763
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-23 Score=208.17 Aligned_cols=228 Identities=16% Similarity=0.180 Sum_probs=106.1
Q ss_pred CCCcEEEcccCCCCCCCchHH---hccccccceeeccCCcccccCCccc--cCCCCCCEEEccCCcCCcccc----cccc
Q 037488 110 KYLKYFSFSNNSLDGILPRAI---GNLSQSMEIFWMHSCNISGGIPEEI--SNLTNLIAIYLGGNKLNGSIP----IALG 180 (628)
Q Consensus 110 ~~L~~L~l~~n~l~~~~p~~~---~~l~~~l~~l~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~ 180 (628)
..++.+.+.++.+....-..+ ..+ ..++.|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 346677777666542110000 011 124444444444444444444 445555555555555544322 2233
Q ss_pred CCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcc---cC-CCCccCCCCCcEEEccCCcCCcCCCCccCCCCC
Q 037488 181 KLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSG---FV-PASFGNLTNLRSLHLGSNQITSIPSTLLNLKDI 256 (628)
Q Consensus 181 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~---~~-~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L 256 (628)
.+++|++|+|++|++.+..+..+..+++|++|+|++|++.+ .. +..+..+++|++|+|++|+++.++....
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~----- 217 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA----- 217 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH-----
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH-----
Confidence 44555555555555544444445555555555555555432 11 1122444455555555555443332100
Q ss_pred cEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCC---CCCCEEeCCCCcCcccCChhhcCCCCCCEEEC
Q 037488 257 LYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYL---KDLQYLFLEYNRLQGSIPDSIGDLINLKSLDL 333 (628)
Q Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 333 (628)
..+..+++|++|+|++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++
T Consensus 218 ---------------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 218 ---------------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDL 279 (310)
T ss_dssp ---------------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEEC
T ss_pred ---------------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEEC
Confidence 012344455555555555554444433333 35555555555555 3344332 45666666
Q ss_pred cCCcccccCchhhhcCCCCCEEEccCCcce
Q 037488 334 SNNNLSGIIPISLEKLLDLKDINVSFNKLE 363 (628)
Q Consensus 334 ~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~ 363 (628)
++|+++++ |. +..+++|+.|++++|+++
T Consensus 280 s~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 280 SSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 66666543 21 445566666666666554
|
| >1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-24 Score=217.55 Aligned_cols=195 Identities=18% Similarity=0.182 Sum_probs=132.8
Q ss_pred hcCCCcccccccCCccEEEEEEe--cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCC------cceeeeeccCCCc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI--HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRN------LIKIISSCSNDDF 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~--~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~~~ 497 (628)
.++|...+.||+|+||.||+|.. .+|+.||||+++... ...+.+.+|+++++.++|++ ++++++++..++.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 46899999999999999999986 468999999997532 34567889999999998765 8888886643211
Q ss_pred --------------------------------------------------------------------------------
Q 037488 498 -------------------------------------------------------------------------------- 497 (628)
Q Consensus 498 -------------------------------------------------------------------------------- 497 (628)
T Consensus 92 ~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~ 171 (339)
T 1z57_A 92 ICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTL 171 (339)
T ss_dssp EEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CEEEEE
T ss_pred EEEEEcCCCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCccccccccc
Confidence
Q ss_pred ------cccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHH
Q 037488 498 ------KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKH 571 (628)
Q Consensus 498 ------~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~ 571 (628)
.+|||+|+..... ....+||+.|+|||++.+..++.++||||+||++|||++|+.||...... ....
T Consensus 172 ~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~--~~~~ 244 (339)
T 1z57_A 172 INPDIKVVDFGSATYDDEH-----HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSK--EHLA 244 (339)
T ss_dssp SCCCEEECCCSSCEETTSC-----CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHH--HHHH
T ss_pred cCCCceEeeCcccccCccc-----cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChH--HHHH
Confidence 1377777653221 23457999999999999999999999999999999999999999753221 1111
Q ss_pred HHHhhcCCccceeec----------ccc---------------cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 572 WVNDLLPISVMKVVD----------AHL---------------LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 572 ~~~~~~~~~~~~~~~----------~~~---------------~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
.+............. ... .............++.++.+++.+||+.||++|||+.
T Consensus 245 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ 324 (339)
T 1z57_A 245 MMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLR 324 (339)
T ss_dssp HHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHH
T ss_pred HHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHH
Confidence 111111100000000 000 0000000112234577899999999999999999987
Q ss_pred CC
Q 037488 627 EI 628 (628)
Q Consensus 627 ev 628 (628)
|+
T Consensus 325 el 326 (339)
T 1z57_A 325 EA 326 (339)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.3e-25 Score=219.86 Aligned_cols=174 Identities=20% Similarity=0.289 Sum_probs=126.1
Q ss_pred HhhcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch------hHHHHHHHHHHHhhcc----cCCCcceeeeec
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR------EAFKNFDIECDMMKHI----RHRNLIKIISSC 492 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l----~h~niv~l~~~~ 492 (628)
...++|...+.||+|+||.||+|+. .+++.||||+++.... .....+.+|+++++++ +||||+++++++
T Consensus 28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~ 107 (312)
T 2iwi_A 28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF 107 (312)
T ss_dssp -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence 3457899999999999999999987 6789999999965432 1233466799999998 899999999987
Q ss_pred cCCCcc--------------------------------------------------------------------cccccc
Q 037488 493 SNDDFK--------------------------------------------------------------------ADFGMA 504 (628)
Q Consensus 493 ~~~~~~--------------------------------------------------------------------~DFGla 504 (628)
..++.. +|||++
T Consensus 108 ~~~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~dfg~~ 187 (312)
T 2iwi_A 108 ETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSG 187 (312)
T ss_dssp -----CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEECCCSSC
T ss_pred ecCCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEEEEcchh
Confidence 543211 399998
Q ss_pred ccccccCcccccccccccccccCccccccCccC-cccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccce
Q 037488 505 KPLLKEDQSLIQTQTLATIGYMAPEYGREGRVS-TNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMK 583 (628)
Q Consensus 505 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (628)
+...... .....||..|+|||++.+..+. .++||||+||++|||++|+.||.... ....
T Consensus 188 ~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-------~~~~--------- 247 (312)
T 2iwi_A 188 ALLHDEP----YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ-------EILE--------- 247 (312)
T ss_dssp EECCSSC----BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------HHHH---------
T ss_pred hhcccCc----ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH-------HHhh---------
Confidence 8654321 2345799999999999877764 58999999999999999999996421 0100
Q ss_pred eecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 584 VVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ....+..++.++.+++.+||+.||++|||+.|+
T Consensus 248 ---~--------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~ 281 (312)
T 2iwi_A 248 ---A--------ELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEI 281 (312)
T ss_dssp ---T--------CCCCCTTSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred ---h--------ccCCcccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 0 011123345678999999999999999998763
|
| >3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-24 Score=229.13 Aligned_cols=188 Identities=15% Similarity=0.154 Sum_probs=131.5
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceee-eeccCCCc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKII-SSCSNDDF------ 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~-~~~~~~~~------ 497 (628)
.++|...+.||+|+||.||+|+. .+++.||||+++.... ...+.+|+++++.++|++.+..+ .++..++.
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 46899999999999999999986 6799999999865432 23578899999999875544333 32221110
Q ss_pred ---------------------------------------------------------------cccccccccccccCcc-
Q 037488 498 ---------------------------------------------------------------KADFGMAKPLLKEDQS- 513 (628)
Q Consensus 498 ---------------------------------------------------------------~~DFGla~~~~~~~~~- 513 (628)
.+|||+|+.+......
T Consensus 84 ~~g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~ 163 (483)
T 3sv0_A 84 LLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQ 163 (483)
T ss_dssp CCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCC
T ss_pred CCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCcccc
Confidence 0499999876443221
Q ss_pred ----cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccc
Q 037488 514 ----LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589 (628)
Q Consensus 514 ----~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (628)
......+||+.|+|||++.+..++.++|||||||++|||++|+.||......... ...... .....
T Consensus 164 ~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~--~~~~~i--------~~~~~ 233 (483)
T 3sv0_A 164 HIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKK--QKYEKI--------SEKKV 233 (483)
T ss_dssp BCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHH--HHHHHH--------HHHHH
T ss_pred ccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHH--HHHHHH--------hhccc
Confidence 1123567999999999999999999999999999999999999999864432211 111100 00000
Q ss_pred cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. .....+..++.++.+++.+||+.||++||++.+|
T Consensus 234 ~~---~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el 269 (483)
T 3sv0_A 234 AT---SIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYL 269 (483)
T ss_dssp HS---CHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHH
T ss_pred cc---cHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHH
Confidence 00 0011223456789999999999999999998753
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-24 Score=218.37 Aligned_cols=183 Identities=16% Similarity=0.115 Sum_probs=106.3
Q ss_pred hhcCCCccc-ccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccC----CCc-
Q 037488 425 ATNGFSENN-LIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSN----DDF- 497 (628)
Q Consensus 425 ~~~~~~~~~-~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~- 497 (628)
..++|...+ .||+|+||.||+|+. .+|+.||||++..... .. .+....++.++||||+++++++.. +..
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~---~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 101 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPK-AR---QEVDHHWQASGGPHIVCILDVYENMHHGKRCL 101 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHH-HH---HHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHH-HH---HHHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence 356788754 699999999999987 5799999999965321 11 122334566789999999887643 100
Q ss_pred ----------------------------------------------------------------------cccccccccc
Q 037488 498 ----------------------------------------------------------------------KADFGMAKPL 507 (628)
Q Consensus 498 ----------------------------------------------------------------------~~DFGla~~~ 507 (628)
.+|||+|+..
T Consensus 102 ~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~ 181 (336)
T 3fhr_A 102 LIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKET 181 (336)
T ss_dssp EEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC
T ss_pred EEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccccceec
Confidence 0389988754
Q ss_pred cccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecc
Q 037488 508 LKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587 (628)
Q Consensus 508 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (628)
... .....+||+.|+|||++.+..|+.++||||+||++|||++|+.||.......... .. ...
T Consensus 182 ~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~-~~------------~~~ 244 (336)
T 3fhr_A 182 TQN----ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISP-GM------------KRR 244 (336)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC----------------------------
T ss_pred ccc----ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhh-hH------------HHh
Confidence 322 1234579999999999999999999999999999999999999996533221100 00 000
Q ss_pred cccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
............+..++.++.+++.+||+.||++|||+.|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el 285 (336)
T 3fhr_A 245 IRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQF 285 (336)
T ss_dssp ------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred hhccccccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHH
Confidence 00011111112223567789999999999999999998763
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-24 Score=223.47 Aligned_cols=256 Identities=18% Similarity=0.214 Sum_probs=122.7
Q ss_pred EEccCCcceecCCccccCCCCCCEEeccCCcccccCc----cccCCCC-CCCEEEccCccccCCCCCCcccccccCC-CC
Q 037488 38 LLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIP----NTFGNLR-NLNRLGLNDNYLTSSTPKLNFLSSLSNC-KY 111 (628)
Q Consensus 38 L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~----~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~~l-~~ 111 (628)
++++.|.+++.+|..+...++|++|+|++|.+++..+ ++|.+++ +|++|+|++|.++...+.. +...+... ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE-LVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH-HHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH-HHHHHhccCCC
Confidence 4566666666666655555556666666666666555 5566666 6666666666665432110 00111111 66
Q ss_pred CcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCC-CCCCEEEccCCcCCccccccc----cC-CCCC
Q 037488 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNL-TNLIAIYLGGNKLNGSIPIAL----GK-LQKL 185 (628)
Q Consensus 112 L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~~----~~-l~~L 185 (628)
|++|+|++|.+++..+..+... +..+ ++|+.|++++|.+++..+..+ .. .++|
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~---------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 140 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKT---------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHH---------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTC
T ss_pred ccEEECcCCcCChHHHHHHHHH---------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCce
Confidence 6666666666665544443321 1122 345555555555543333222 12 1355
Q ss_pred CEeecccCcccccC----CccccCCC-CCCEEEccCCcCcccCCCC----ccCC-CCCcEEEccCCcCCc-----CCCCc
Q 037488 186 QLLNLEYNQLEGSI----PDDLCRLA-ALFQLDLGSNKLSGFVPAS----FGNL-TNLRSLHLGSNQITS-----IPSTL 250 (628)
Q Consensus 186 ~~L~L~~n~l~~~~----p~~~~~l~-~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~-----lp~~~ 250 (628)
++|+|++|++.... +..+..++ +|++|+|++|++++..+.. +..+ ++|+.|+|++|.++. ++..+
T Consensus 141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 220 (362)
T 3goz_A 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF 220 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence 55555555554321 12223333 5555555555554433322 2223 355555555555554 33333
Q ss_pred cC-CCCCcEEEcCCCCCcCCCC----CcccCCccccEEEcCCCcCCCCCc-------cccCCCCCCCEEeCCCCcCc
Q 037488 251 LN-LKDILYLNLSSNFFTGPLP----LEIGNLKVLIKIDLSMNNFSGVIP-------ITIGYLKDLQYLFLEYNRLQ 315 (628)
Q Consensus 251 ~~-l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~p-------~~~~~l~~L~~L~l~~n~~~ 315 (628)
.. .++|++|++++|.++...+ ..+..+++|+.|+|++|.+....+ ..+..+++|+.|++++|++.
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 33 2355555555555543322 223444555555555555333222 12334444455555555444
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=203.50 Aligned_cols=195 Identities=25% Similarity=0.373 Sum_probs=158.0
Q ss_pred ccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCc
Q 037488 155 ISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLR 234 (628)
Q Consensus 155 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 234 (628)
+..+++|+.|++++|.+.. +| .+..+++|++|++++|++.+..+ +..+++|++|++++|++++. +.+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 4457788888888888874 44 57788888888888888875433 88888888888888888764 3688888889
Q ss_pred EEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcC
Q 037488 235 SLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRL 314 (628)
Q Consensus 235 ~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 314 (628)
.|++++|.++.++. +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 99998888888765 7788889999999988886544 7888889999999998886544 78888999999999998
Q ss_pred cccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCccee
Q 037488 315 QGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEG 364 (628)
Q Consensus 315 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~ 364 (628)
++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 75433 7888899999999999987653 7888999999999998875
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-23 Score=208.24 Aligned_cols=222 Identities=18% Similarity=0.190 Sum_probs=157.0
Q ss_pred CCCEEEccCCcCCccc-c--ccccCCCCCCEeecccCcccccCCccc--cCCCCCCEEEccCCcCcccCC----CCccCC
Q 037488 160 NLIAIYLGGNKLNGSI-P--IALGKLQKLQLLNLEYNQLEGSIPDDL--CRLAALFQLDLGSNKLSGFVP----ASFGNL 230 (628)
Q Consensus 160 ~L~~L~L~~n~l~~~~-p--~~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l 230 (628)
.++.+.+.++.+.... . ..+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4556666666554210 0 012234567777777777777777666 777777777777777775433 234467
Q ss_pred CCCcEEEccCCcCCcCC-CCccCCCCCcEEEcCCCCCcCC----CCCcccCCccccEEEcCCCcCCCCCcc---ccCCCC
Q 037488 231 TNLRSLHLGSNQITSIP-STLLNLKDILYLNLSSNFFTGP----LPLEIGNLKVLIKIDLSMNNFSGVIPI---TIGYLK 302 (628)
Q Consensus 231 ~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~ 302 (628)
++|++|+|++|.++.++ ..+..+++|++|++++|.+.+. .+..+..+++|++|+|++|+++...+. .++.++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 78888888888887765 4566778888888888876541 123346788899999999998733221 346789
Q ss_pred CCCEEeCCCCcCcccCChhhcCC---CCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCCCccccccccc
Q 037488 303 DLQYLFLEYNRLQGSIPDSIGDL---INLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAES 379 (628)
Q Consensus 303 ~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~ 379 (628)
+|++|++++|++++..|..+..+ ++|+.|++++|.++.+ |..+. ++|+.|++++|++++. |....+..+....
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~ 300 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLT 300 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEE
Confidence 99999999999998878777776 6999999999999954 55543 7999999999999974 3334456666667
Q ss_pred ccCCCc
Q 037488 380 FKGNEL 385 (628)
Q Consensus 380 ~~~~~~ 385 (628)
+.+|+.
T Consensus 301 L~~N~l 306 (310)
T 4glp_A 301 LDGNPF 306 (310)
T ss_dssp CSSTTT
T ss_pred CcCCCC
Confidence 777754
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-22 Score=192.38 Aligned_cols=177 Identities=24% Similarity=0.297 Sum_probs=93.8
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEcc
Q 037488 160 NLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLG 239 (628)
Q Consensus 160 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 239 (628)
+.+.++++++.++ .+|..+. +.|+.|+|++|++.+..+..|.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3455666666665 3444333 456666666666665555556666666666666666665555556666666666666
Q ss_pred CCcCCcCCC-CccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccC
Q 037488 240 SNQITSIPS-TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSI 318 (628)
Q Consensus 240 ~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 318 (628)
+|+++.+|. .+..+++|++|++++|.+++..+..|..+++|+.|+|++|++++..+..++.+++|++|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 666655543 2334555555555555555444444444555555555555544444434444444444444444444443
Q ss_pred ChhhcCCCCCCEEECcCCccc
Q 037488 319 PDSIGDLINLKSLDLSNNNLS 339 (628)
Q Consensus 319 ~~~~~~l~~L~~L~l~~N~l~ 339 (628)
+..+..+++|+.|++++|.+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBC
T ss_pred HHHHhCCCCCCEEEeeCCcee
Confidence 434444444444444444443
|
| >2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-23 Score=216.33 Aligned_cols=195 Identities=18% Similarity=0.163 Sum_probs=130.8
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCC-cEEEEEEeeccchhHHHHHHHHHHHhhcccCCC------cceeeeeccCCCc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYG-MEVAVKVFDLQYREAFKNFDIECDMMKHIRHRN------LIKIISSCSNDDF 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~-~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~~~ 497 (628)
.++|...+.||+|+||.||+|.. .++ +.||||+++.. ....+.+.+|++++++++|++ ++.+++++.....
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 46889999999999999999987 344 78999999743 234567888999999998876 7777765432110
Q ss_pred --------------------------------------------------------------------------------
Q 037488 498 -------------------------------------------------------------------------------- 497 (628)
Q Consensus 498 -------------------------------------------------------------------------------- 497 (628)
T Consensus 97 ~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~ 176 (355)
T 2eu9_A 97 MCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSV 176 (355)
T ss_dssp EEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEE
T ss_pred EEEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeccccccccccccccccccc
Confidence
Q ss_pred ------cccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHH
Q 037488 498 ------KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKH 571 (628)
Q Consensus 498 ------~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~ 571 (628)
.+|||+|+..... ....+||+.|+|||++.+..++.++||||+||++|||++|+.||...... ....
T Consensus 177 ~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~--~~~~ 249 (355)
T 2eu9_A 177 KNTSIRVADFGSATFDHEH-----HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENR--EHLV 249 (355)
T ss_dssp SCCCEEECCCTTCEETTSC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHH
T ss_pred CCCcEEEeecCcccccccc-----ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH--HHHH
Confidence 1388888753222 23457999999999999999999999999999999999999999753221 1111
Q ss_pred HHHhhcCCcccee----------eccccc---------------CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 572 WVNDLLPISVMKV----------VDAHLL---------------SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 572 ~~~~~~~~~~~~~----------~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
.+........... ...... .............+.++.+++.+||+.||++|||+.
T Consensus 250 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ 329 (355)
T 2eu9_A 250 MMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLA 329 (355)
T ss_dssp HHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHH
T ss_pred HHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHH
Confidence 1111111000000 000000 000000011123466899999999999999999987
Q ss_pred CC
Q 037488 627 EI 628 (628)
Q Consensus 627 ev 628 (628)
|+
T Consensus 330 e~ 331 (355)
T 2eu9_A 330 EA 331 (355)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-23 Score=214.67 Aligned_cols=173 Identities=12% Similarity=0.069 Sum_probs=125.5
Q ss_pred hhcCCCcccccccCCccEEEEEE------ecCCcEEEEEEeeccchhHHHHHHHHHHHhhccc---CCCcceeeeeccCC
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRR------IHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIR---HRNLIKIISSCSND 495 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~------~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~ 495 (628)
..+.|...+.||+|+||.||+|. ..+++.||||+++.... ..+.+|+++++.++ |+||+++++++..+
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~ 139 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANP---WEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ 139 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCH---HHHHHHHHHHHHSCGGGGGGBCCEEEEEECS
T ss_pred CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCCh---hHHHHHHHHHHHhhhhhhhhhhhhheeeecC
Confidence 35678889999999999999994 35688999999975433 34667777777775 99999998876432
Q ss_pred Ccc-----------------------------------------------------------------------------
Q 037488 496 DFK----------------------------------------------------------------------------- 498 (628)
Q Consensus 496 ~~~----------------------------------------------------------------------------- 498 (628)
+..
T Consensus 140 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~~~ 219 (365)
T 3e7e_A 140 NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLS 219 (365)
T ss_dssp SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC------C
T ss_pred CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCcccccccc
Confidence 210
Q ss_pred -----ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHH
Q 037488 499 -----ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWV 573 (628)
Q Consensus 499 -----~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~ 573 (628)
+|||+|+.+............+||++|||||++.+..|+.++|||||||++|||+||+.||.....+..
T Consensus 220 ~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~------ 293 (365)
T 3e7e_A 220 AGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGEC------ 293 (365)
T ss_dssp TTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEE------
T ss_pred CCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCce------
Confidence 399999765433223334566899999999999999999999999999999999999999864322110
Q ss_pred HhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 574 NDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
....... . ...+..+.+++.+|++.+|.+|++.
T Consensus 294 ----------~~~~~~~-~--------~~~~~~~~~~~~~~l~~~p~~r~~~ 326 (365)
T 3e7e_A 294 ----------KPEGLFR-R--------LPHLDMWNEFFHVMLNIPDCHHLPS 326 (365)
T ss_dssp ----------EECSCCT-T--------CSSHHHHHHHHHHHHCCCCTTCCCC
T ss_pred ----------eechhcc-c--------cCcHHHHHHHHHHHcCCCCCCcchH
Confidence 0011000 0 0124567899999999999999653
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=190.60 Aligned_cols=179 Identities=26% Similarity=0.301 Sum_probs=123.2
Q ss_pred CCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCC-CccCCCCCcEEEcC
Q 037488 184 KLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLS 262 (628)
Q Consensus 184 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~ 262 (628)
..++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|+|++|.++.++. .+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3456777777766 3444443 467777777777776666667777777777777777776544 35567777777777
Q ss_pred CCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccC
Q 037488 263 SNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGII 342 (628)
Q Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 342 (628)
+|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..|..+++|+.|++++|.++++.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 77777666666677777777777777777666666667777777777777777655556777777777777777777666
Q ss_pred chhhhcCCCCCEEEccCCcceec
Q 037488 343 PISLEKLLDLKDINVSFNKLEGE 365 (628)
Q Consensus 343 ~~~~~~l~~L~~l~l~~N~l~~~ 365 (628)
+..+..+++|+.|++++|++.+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 66677777777777777777655
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-24 Score=224.17 Aligned_cols=138 Identities=22% Similarity=0.269 Sum_probs=68.4
Q ss_pred cccCCCCCCEEEccCCcCCc----cccccccCCCCCCEeecccCcccccCCcccc----CC---------CCCCEEEccC
Q 037488 154 EISNLTNLIAIYLGGNKLNG----SIPIALGKLQKLQLLNLEYNQLEGSIPDDLC----RL---------AALFQLDLGS 216 (628)
Q Consensus 154 ~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~L~~ 216 (628)
.+..+++|++|+|++|.+.. .+|..+..+++|++|+|++|.+....+..+. .+ ++|++|++++
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 34455666666666666654 3455556666666666666666433222222 22 5666666666
Q ss_pred CcCc-ccCC---CCccCCCCCcEEEccCCcCCc------CCCCccCCCCCcEEEcCCCCCc----CCCCCcccCCccccE
Q 037488 217 NKLS-GFVP---ASFGNLTNLRSLHLGSNQITS------IPSTLLNLKDILYLNLSSNFFT----GPLPLEIGNLKVLIK 282 (628)
Q Consensus 217 n~l~-~~~~---~~~~~l~~L~~L~L~~n~l~~------lp~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~ 282 (628)
|+++ ...+ ..+..+++|++|++++|.++. +|..+..+++|++|++++|.++ ..+|..+..+++|+.
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 6654 1222 234455556666666655541 2224444445555555555443 223333444444444
Q ss_pred EEcCCCcCC
Q 037488 283 IDLSMNNFS 291 (628)
Q Consensus 283 L~Ls~N~l~ 291 (628)
|+|++|.++
T Consensus 249 L~L~~n~i~ 257 (386)
T 2ca6_A 249 LGLNDCLLS 257 (386)
T ss_dssp EECTTCCCC
T ss_pred EECCCCCCc
Confidence 444444443
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.1e-24 Score=213.68 Aligned_cols=183 Identities=20% Similarity=0.267 Sum_probs=127.3
Q ss_pred hhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
..++|...+.||+|+||.||+|+... .||+|+++... ....+.+.+|+.++++++||||+++++++..++..
T Consensus 31 ~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~ 108 (319)
T 2y4i_B 31 PFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIIT 108 (319)
T ss_dssp CCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEEC
T ss_pred CHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEe
Confidence 35778889999999999999998753 49999986532 22345678899999999999999999987654311
Q ss_pred --------------------------------------------------------------ccccccccccccC---cc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKED---QS 513 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~---~~ 513 (628)
+|||+|+...... ..
T Consensus 109 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~~~~~~l~Dfg~~~~~~~~~~~~~~ 188 (319)
T 2y4i_B 109 SLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYDNGKVVITDFGLFSISGVLQAGRRE 188 (319)
T ss_dssp BCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC--CCEECCCSCCC----------C
T ss_pred ecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEeCCCEEEeecCCccccccccccccc
Confidence 3999987542211 11
Q ss_pred cccccccccccccCcccccc---------CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCcccee
Q 037488 514 LIQTQTLATIGYMAPEYGRE---------GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKV 584 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~---------~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (628)
.......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... ..........
T Consensus 189 ~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-----~~~~~~~~~~---- 259 (319)
T 2y4i_B 189 DKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAE-----AIIWQMGTGM---- 259 (319)
T ss_dssp CSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHH-----HHHHHHHTTC----
T ss_pred cccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-----HHHHHhccCC----
Confidence 12233469999999999874 45799999999999999999999999753211 1111110000
Q ss_pred ecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 585 VDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+. ..+..++.++.+++.+||+.||++|||+.|+
T Consensus 260 -~~~---------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l 293 (319)
T 2y4i_B 260 -KPN---------LSQIGMGKEISDILLFCWAFEQEERPTFTKL 293 (319)
T ss_dssp -CCC---------CCCSSCCTTHHHHHHHHHCSSTTTSCCHHHH
T ss_pred -CCC---------CCcCCCCHHHHHHHHHHhcCChhhCcCHHHH
Confidence 000 0011234458999999999999999998753
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-22 Score=199.66 Aligned_cols=192 Identities=27% Similarity=0.446 Sum_probs=137.7
Q ss_pred CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCC
Q 037488 32 LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKY 111 (628)
Q Consensus 32 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~ 111 (628)
+++|++|++++|.++. +| .+..+++|+.|+|++|+++++.+ |.++++|+.|++++|.++.+ ..+..+++
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-------~~~~~l~~ 108 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-------SAIAGLQS 108 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-------GGGTTCTT
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-------hhhcCCCC
Confidence 5567777777777764 33 46778888888888888877655 78888888888888887764 24677788
Q ss_pred CcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecc
Q 037488 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLE 191 (628)
Q Consensus 112 L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 191 (628)
|++|++++|.++++. .+..+++|+.|++++|.+++..+ +..+++|++|+++
T Consensus 109 L~~L~l~~n~l~~~~---------------------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 109 IKTLDLTSTQITDVT---------------------------PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIG 159 (308)
T ss_dssp CCEEECTTSCCCCCG---------------------------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred CCEEECCCCCCCCch---------------------------hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEcc
Confidence 888888888776421 14566777777777777765433 6677777777777
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcC
Q 037488 192 YNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTG 268 (628)
Q Consensus 192 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~ 268 (628)
+|++.+..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|+++.+++ +..+++|++|++++|.+++
T Consensus 160 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 160 NAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred CCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 777765332 7777777777777777775443 6777778888888887777763 6677778888888877764
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.8e-22 Score=201.13 Aligned_cols=240 Identities=20% Similarity=0.147 Sum_probs=128.5
Q ss_pred CEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccce
Q 037488 60 SRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEI 139 (628)
Q Consensus 60 ~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~ 139 (628)
++++.++++++.+ |..+ .+++++|+|++|+|+.+++. +|.++++|++|+|++|++.+.+|
T Consensus 12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~~i~~~-----~f~~l~~L~~L~Ls~N~i~~~i~------------ 71 (350)
T 4ay9_X 12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKG-----AFSGFGDLEKIEISQNDVLEVIE------------ 71 (350)
T ss_dssp TEEEEESTTCCSC-CTTC--CTTCSEEEEESCCCSEECTT-----SSTTCTTCCEEEEECCTTCCEEC------------
T ss_pred CEEEecCCCCCcc-CcCc--CCCCCEEEccCCcCCCcCHH-----HHcCCCCCCEEECcCCCCCCccC------------
Confidence 4566677777654 3333 24677777777777765542 46677777777777776643322
Q ss_pred eeccCCcccccCCccccCCCCCCE-EEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccC-C
Q 037488 140 FWMHSCNISGGIPEEISNLTNLIA-IYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGS-N 217 (628)
Q Consensus 140 l~l~~n~~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n 217 (628)
+..|.+++++.. +.+++|++....|..|..+++|++|++++|++....+..+....++..|++.+ +
T Consensus 72 ------------~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~ 139 (350)
T 4ay9_X 72 ------------ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139 (350)
T ss_dssp ------------TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT
T ss_pred ------------hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccc
Confidence 123444444433 34444555544455555556666666666655544444444455555555543 4
Q ss_pred cCcccCCCCccCCC-CCcEEEccCCcCCcCCCCccCCCCCcEEEcCC-CCCcCCCCCcccCCccccEEEcCCCcCCCCCc
Q 037488 218 KLSGFVPASFGNLT-NLRSLHLGSNQITSIPSTLLNLKDILYLNLSS-NFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIP 295 (628)
Q Consensus 218 ~l~~~~~~~~~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 295 (628)
++....+..|..+. .++.|+|++|+|+++|..++...+|++|++++ |.++...+..|..+++|+.|++++|+++...+
T Consensus 140 ~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred ccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 45544444555543 45666666666666666555555666666653 44554444555666666666666666654333
Q ss_pred cccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcC
Q 037488 296 ITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSN 335 (628)
Q Consensus 296 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 335 (628)
.. +.+|+.|.+.++.-...+|. +..+++|+.+++++
T Consensus 220 ~~---~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 YG---LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp SS---CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred hh---hccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 22 33344444333322223332 44555555555543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-24 Score=219.33 Aligned_cols=212 Identities=20% Similarity=0.233 Sum_probs=118.0
Q ss_pred cccCCC-CCCEEEccCCcCCccccccccCC-----CCCCEeecccCcccccCCccc----cCC-CCCCEEEccCCcCccc
Q 037488 154 EISNLT-NLIAIYLGGNKLNGSIPIALGKL-----QKLQLLNLEYNQLEGSIPDDL----CRL-AALFQLDLGSNKLSGF 222 (628)
Q Consensus 154 ~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~~----~~l-~~L~~L~L~~n~l~~~ 222 (628)
.+..++ +|++|+|++|.+.+..+..+..+ ++|++|+|++|++.+..+..+ ..+ ++|++|++++|++++.
T Consensus 45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 344455 56666666666655444444443 566666666666654443322 223 5666666666666544
Q ss_pred CCCCc----cC-CCCCcEEEccCCcCCc-----CCCCccCCC-CCcEEEcCCCCCcCCCCCccc----CC-ccccEEEcC
Q 037488 223 VPASF----GN-LTNLRSLHLGSNQITS-----IPSTLLNLK-DILYLNLSSNFFTGPLPLEIG----NL-KVLIKIDLS 286 (628)
Q Consensus 223 ~~~~~----~~-l~~L~~L~L~~n~l~~-----lp~~~~~l~-~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~Ls 286 (628)
.+..+ .. .++|++|+|++|.++. ++..+..++ +|++|++++|.+++..+..+. .. ++|+.|+|+
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence 33322 22 2466666666666652 233333343 666777777766654443332 23 467777777
Q ss_pred CCcCCCC----CccccCC-CCCCCEEeCCCCcCcccCC----hhhcCCCCCCEEECcCCcccccCc-------hhhhcCC
Q 037488 287 MNNFSGV----IPITIGY-LKDLQYLFLEYNRLQGSIP----DSIGDLINLKSLDLSNNNLSGIIP-------ISLEKLL 350 (628)
Q Consensus 287 ~N~l~~~----~p~~~~~-l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~N~l~~~~~-------~~~~~l~ 350 (628)
+|.++.. ++..+.. .++|++|+|++|.++...+ ..+..+++|+.|++++|.+.++.+ ..+..++
T Consensus 205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~ 284 (362)
T 3goz_A 205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284 (362)
T ss_dssp TSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC
T ss_pred CCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC
Confidence 7776642 2223333 3467777777777765433 234556777777777777544332 2345566
Q ss_pred CCCEEEccCCcceec
Q 037488 351 DLKDINVSFNKLEGE 365 (628)
Q Consensus 351 ~L~~l~l~~N~l~~~ 365 (628)
+|+.|++++|++...
T Consensus 285 ~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 285 KIILVDKNGKEIHPS 299 (362)
T ss_dssp EEEEECTTSCBCCGG
T ss_pred ceEEEecCCCcCCCc
Confidence 777778888876644
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-22 Score=202.57 Aligned_cols=240 Identities=20% Similarity=0.218 Sum_probs=132.5
Q ss_pred CEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcE-
Q 037488 36 EELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKY- 114 (628)
Q Consensus 36 ~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~- 114 (628)
++++.++++++. +|..+ .+++++|+|++|+|+.+.+++|.++++|++|+|++|++.+..+. ..|.++++|+.
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~----~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA----DVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT----TSBCSCTTCCEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh----hHhhcchhhhhh
Confidence 456677777763 45444 35678888888888877777888888888888888877543221 24666666554
Q ss_pred EEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeeccc-C
Q 037488 115 FSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEY-N 193 (628)
Q Consensus 115 L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n 193 (628)
+.+++|+++.+. |..|..+++|+.|++++|++....+..+....++..|++.+ +
T Consensus 85 l~~~~N~l~~l~-------------------------~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~ 139 (350)
T 4ay9_X 85 RIEKANNLLYIN-------------------------PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139 (350)
T ss_dssp EEEEETTCCEEC-------------------------TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT
T ss_pred hcccCCcccccC-------------------------chhhhhccccccccccccccccCCchhhcccchhhhhhhcccc
Confidence 444455555333 34445555555555555555544444444444555555543 3
Q ss_pred cccccCCccccCCC-CCCEEEccCCcCcccCCCCccCCCCCcEEEcc-CCcCCcCCCC-ccCCCCCcEEEcCCCCCcCCC
Q 037488 194 QLEGSIPDDLCRLA-ALFQLDLGSNKLSGFVPASFGNLTNLRSLHLG-SNQITSIPST-LLNLKDILYLNLSSNFFTGPL 270 (628)
Q Consensus 194 ~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~ 270 (628)
++....+..|..+. .++.|+|++|+|+.+.+..| ...+|+.|+++ +|.++.+|.. +..+++|++|++++|+++..+
T Consensus 140 ~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred ccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 44444444444443 45556666666654443333 23456666664 3555566543 345566666666666666544
Q ss_pred CCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCC
Q 037488 271 PLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYN 312 (628)
Q Consensus 271 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n 312 (628)
+..|.++++|+.+++ +.+. .+| .+..+++|+.++++++
T Consensus 219 ~~~~~~L~~L~~l~~--~~l~-~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 219 SYGLENLKKLRARST--YNLK-KLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp SSSCTTCCEEECTTC--TTCC-CCC-CTTTCCSCCEEECSCH
T ss_pred hhhhccchHhhhccC--CCcC-cCC-CchhCcChhhCcCCCC
Confidence 444444433332221 2222 334 2455666666666554
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-23 Score=217.81 Aligned_cols=171 Identities=12% Similarity=0.055 Sum_probs=119.9
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccC-CCcceeeee---------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRH-RNLIKIISS--------- 491 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h-~niv~l~~~--------- 491 (628)
+..|...+.||+|+||+||+|++ .+|+.||||++.... ....+.+.+|+.+++.++| +|......+
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 156 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence 34567778999999999999996 679999999987432 2235678999999999987 221110000
Q ss_pred ------------ccCC--------------------------------C-------------------------------
Q 037488 492 ------------CSND--------------------------------D------------------------------- 496 (628)
Q Consensus 492 ------------~~~~--------------------------------~------------------------------- 496 (628)
+... .
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrD 236 (413)
T 3dzo_A 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTY 236 (413)
T ss_dssp EECCC---------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred cccCCCCccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 0000 0
Q ss_pred --------------ccccccccccccccCcccccccccccccccCcccc----------ccCccCcccchhhHhHHHHHH
Q 037488 497 --------------FKADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYG----------REGRVSTNGDVYSFGIMLIET 552 (628)
Q Consensus 497 --------------~~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~DVwS~Gvvl~e~ 552 (628)
..+|||+|+..... ....+| +.|||||++ .+..|+.++|||||||++|||
T Consensus 237 iKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~el 310 (413)
T 3dzo_A 237 LRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWI 310 (413)
T ss_dssp CCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHH
T ss_pred cccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHH
Confidence 01499999864322 245678 999999999 566789999999999999999
Q ss_pred hhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 553 FTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 553 ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
+||+.||....... ....... ....++.++.+++.+||+.||++|||+.|
T Consensus 311 ltg~~Pf~~~~~~~-----------------~~~~~~~--------~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ 360 (413)
T 3dzo_A 311 WCADLPNTDDAALG-----------------GSEWIFR--------SCKNIPQPVRALLEGFLRYPKEDRLLPLQ 360 (413)
T ss_dssp HHSSCCCCTTGGGS-----------------CSGGGGS--------SCCCCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred HHCCCCCCCcchhh-----------------hHHHHHh--------hcccCCHHHHHHHHHHccCChhhCcCHHH
Confidence 99999997532211 1111111 11134567999999999999999999754
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.5e-25 Score=240.65 Aligned_cols=126 Identities=14% Similarity=0.161 Sum_probs=85.5
Q ss_pred ccCCCCCCEEecCccC------------CCCCCEEEccCC-cceec-CCccccCCCCCCEEeccCCcccccCccccC---
Q 037488 16 IFNVSTLNSLYLQNVQ------------LQNLEELLLWGN-NFSGT-IPSFIFNASKLSRLELQMNSFYGFIPNTFG--- 78 (628)
Q Consensus 16 ~~~l~~L~~L~l~~n~------------l~~L~~L~ls~N-~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~--- 78 (628)
+..+++|++|++++|. +++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+.
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 3578899999999874 578999999998 45432 445556899999999999998775554443
Q ss_pred -CCCCCCEEEccCccccCCCCCCcccc-cccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCC
Q 037488 79 -NLRNLNRLGLNDNYLTSSTPKLNFLS-SLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSC 145 (628)
Q Consensus 79 -~l~~L~~L~L~~N~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n 145 (628)
.+++|+.|++++|. ..+.. ..+. ...++++|++|++++|.-.+.++..+..++ .|+.+.+..+
T Consensus 181 ~~~~~L~~L~l~~~~-~~~~~--~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~-~L~~L~l~~~ 245 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA-SEVSF--SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP-QLEELGTGGY 245 (594)
T ss_dssp TTCCCCCEEECTTCC-SCCCH--HHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT-TCSEEECSBC
T ss_pred hcCCcCcEEEecccC-CcCCH--HHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC-cceEcccccc
Confidence 67799999999886 21110 0111 124578999999998832222555565554 5777765443
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-23 Score=211.43 Aligned_cols=250 Identities=20% Similarity=0.217 Sum_probs=190.9
Q ss_pred CCcEEEcccCCCCCCCchHHhcc-ccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCcc-ccccccCCCCCCEe
Q 037488 111 YLKYFSFSNNSLDGILPRAIGNL-SQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGS-IPIALGKLQKLQLL 188 (628)
Q Consensus 111 ~L~~L~l~~n~l~~~~p~~~~~l-~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L 188 (628)
.++.+++++|.+. +..+..+ ...++.+++++|.+.+..+. +..+++|+.|++++|.+.+. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4677777777665 4444444 13577777777777766554 55788999999999988765 77778889999999
Q ss_pred ecccCcccccCCccccCCCCCCEEEccCC-cCccc-CCCCccCCCCCcEEEccCC-cCCc--CCCCccCCC-CCcEEEcC
Q 037488 189 NLEYNQLEGSIPDDLCRLAALFQLDLGSN-KLSGF-VPASFGNLTNLRSLHLGSN-QITS--IPSTLLNLK-DILYLNLS 262 (628)
Q Consensus 189 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~--lp~~~~~l~-~L~~L~l~ 262 (628)
++++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99999988777788888999999999998 67652 5556788899999999999 8875 566677788 99999999
Q ss_pred CC--CCc-CCCCCcccCCccccEEEcCCCc-CCCCCccccCCCCCCCEEeCCCCc-CcccCChhhcCCCCCCEEECcCCc
Q 037488 263 SN--FFT-GPLPLEIGNLKVLIKIDLSMNN-FSGVIPITIGYLKDLQYLFLEYNR-LQGSIPDSIGDLINLKSLDLSNNN 337 (628)
Q Consensus 263 ~n--~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~N~ 337 (628)
+| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 99 444 3455667788999999999998 776777788889999999999995 32222235788999999999998
Q ss_pred ccccCchhhhcC-CCCCEEEccCCcceecCCC
Q 037488 338 LSGIIPISLEKL-LDLKDINVSFNKLEGEIPR 368 (628)
Q Consensus 338 l~~~~~~~~~~l-~~L~~l~l~~N~l~~~~p~ 368 (628)
++. ..+..+ ..+..|++++|++++..|.
T Consensus 283 i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 283 VPD---GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence 443 233333 2366677899999987775
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.3e-24 Score=219.93 Aligned_cols=242 Identities=24% Similarity=0.240 Sum_probs=190.2
Q ss_pred ccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcC---Cccccccc-
Q 037488 104 SSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKL---NGSIPIAL- 179 (628)
Q Consensus 104 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l---~~~~p~~~- 179 (628)
..+..+++|++|+|++|.+....+..+ +..+..+++|+.|+|++|.+ .+.+|..+
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l---------------------~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~ 84 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWL---------------------SENIASKKDLEIAEFSDIFTGRVKDEIPEALR 84 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHH---------------------HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHH---------------------HHHHHhCCCccEEeCcccccCccccchhHHHH
Confidence 345566777788877777664333222 23456788999999998644 44455444
Q ss_pred ------cCCCCCCEeecccCcccc----cCCccccCCCCCCEEEccCCcCcccCCCCc----cCC---------CCCcEE
Q 037488 180 ------GKLQKLQLLNLEYNQLEG----SIPDDLCRLAALFQLDLGSNKLSGFVPASF----GNL---------TNLRSL 236 (628)
Q Consensus 180 ------~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l---------~~L~~L 236 (628)
..+++|++|+|++|.+.. .+|..+..+++|++|+|++|.++...+..+ ..+ ++|++|
T Consensus 85 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 85 LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred HHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 789999999999999986 467788899999999999999975443333 333 899999
Q ss_pred EccCCcCC--cCC---CCccCCCCCcEEEcCCCCCcC-----CCCCcccCCccccEEEcCCCcCC----CCCccccCCCC
Q 037488 237 HLGSNQIT--SIP---STLLNLKDILYLNLSSNFFTG-----PLPLEIGNLKVLIKIDLSMNNFS----GVIPITIGYLK 302 (628)
Q Consensus 237 ~L~~n~l~--~lp---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~ 302 (628)
++++|+++ .+| ..+..+++|++|++++|.++. ..+..+..+++|+.|+|++|.++ ..+|..+..++
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 99999997 345 456678899999999999872 34557889999999999999996 56777888999
Q ss_pred CCCEEeCCCCcCccc----CChhhcC--CCCCCEEECcCCcccc----cCchhh-hcCCCCCEEEccCCcceecC
Q 037488 303 DLQYLFLEYNRLQGS----IPDSIGD--LINLKSLDLSNNNLSG----IIPISL-EKLLDLKDINVSFNKLEGEI 366 (628)
Q Consensus 303 ~L~~L~l~~n~~~~~----~~~~~~~--l~~L~~L~l~~N~l~~----~~~~~~-~~l~~L~~l~l~~N~l~~~~ 366 (628)
+|++|+|++|.+++. ++..+.. +++|+.|++++|.+++ .+|..+ ..+++|+.|++++|++++..
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 999999999999865 5666644 8999999999999997 366666 66899999999999988554
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.4e-23 Score=208.22 Aligned_cols=198 Identities=18% Similarity=0.231 Sum_probs=93.9
Q ss_pred CCEEEccCCcceecCCccccCC--CCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCC
Q 037488 35 LEELLLWGNNFSGTIPSFIFNA--SKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYL 112 (628)
Q Consensus 35 L~~L~ls~N~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L 112 (628)
++.+++++|.+. |..+..+ ++++.|++++|.+.+..+. +..+++|+.|++++|.++... ....+..+++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~----~~~~~~~~~~L 120 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST----LHGILSQCSKL 120 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH----HHHHHTTBCCC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH----HHHHHhhCCCC
Confidence 555666666554 3344444 5666666666666655444 334666666666666554210 11234555666
Q ss_pred cEEEcccCCCCCCCchHHhccccccceeeccCC-cccc-cCCccccCCCCCCEEEccCC-cCCcc-ccccccCCC-CCCE
Q 037488 113 KYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSC-NISG-GIPEEISNLTNLIAIYLGGN-KLNGS-IPIALGKLQ-KLQL 187 (628)
Q Consensus 113 ~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n-~~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~-~L~~ 187 (628)
++|++++|.+++..+..+..++ .|+.|++++| .+++ .++..+..+++|+.|++++| .+++. ++..+..++ +|++
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~-~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCT-TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CEEeCcCcccCHHHHHHHhcCC-CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 6666666655544444444332 3444444444 2332 13333444455555555555 44432 233344444 5555
Q ss_pred eecccCc--cc-ccCCccccCCCCCCEEEccCCc-CcccCCCCccCCCCCcEEEccCC
Q 037488 188 LNLEYNQ--LE-GSIPDDLCRLAALFQLDLGSNK-LSGFVPASFGNLTNLRSLHLGSN 241 (628)
Q Consensus 188 L~L~~n~--l~-~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 241 (628)
|++++|. ++ +.++..+..+++|+.|++++|. +++..+..+..+++|+.|++++|
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 5555542 22 1223333444444455544444 33333334444444444444444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-22 Score=225.72 Aligned_cols=167 Identities=19% Similarity=0.209 Sum_probs=129.3
Q ss_pred hcCCCcccccccCCccEEEEEEec--CCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH--YGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~--~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
.++|...+.||+|+||.||+|.+. +|+.||||++... .......+.+|++++++++|||||+++++|...+.
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 478999999999999999999874 6899999998643 33455678999999999999999999998764321
Q ss_pred -c--------------------------------------------------------------ccccccccccccCccc
Q 037488 498 -K--------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 498 -~--------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
. +|||+++.....
T Consensus 159 ~~lv~E~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~~~kl~DFG~a~~~~~~---- 234 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEEQLKLIDLGAVSRINSF---- 234 (681)
T ss_dssp EEEEEECCCCEECC----CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSCEEECCCTTCEETTCC----
T ss_pred eEEEEEeCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeCCcEEEEecccchhcccC----
Confidence 0 399999865322
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
...+||++|||||++.++ ++.++|||||||++|||++|.+||....... +..
T Consensus 235 --~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~----------------------~~~--- 286 (681)
T 2pzi_A 235 --GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVDG----------------------LPE--- 286 (681)
T ss_dssp --SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECSS----------------------CCT---
T ss_pred --CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCccccccc----------------------ccc---
Confidence 345799999999998765 4899999999999999999999876422111 000
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
.......+..+.+++.+||+.||++||+..
T Consensus 287 --~~~~~~~~~~l~~li~~~l~~dP~~R~~~~ 316 (681)
T 2pzi_A 287 --DDPVLKTYDSYGRLLRRAIDPDPRQRFTTA 316 (681)
T ss_dssp --TCHHHHHCHHHHHHHHHHTCSSGGGSCSSH
T ss_pred --cccccccCHHHHHHHhhhccCChhhCCCHH
Confidence 001112345689999999999999999754
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-22 Score=196.24 Aligned_cols=181 Identities=11% Similarity=0.018 Sum_probs=122.0
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCccc--
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFKA-- 499 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~-- 499 (628)
.++|...+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|++++++++||||+++++++..++...
T Consensus 30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 109 (286)
T 3uqc_A 30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV 109 (286)
T ss_dssp TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence 36789999999999999999997 569999999997542 344577899999999999999999999987654320
Q ss_pred -------------------------------------cccccccccccCccc---ccccccccccccCccccccCccCcc
Q 037488 500 -------------------------------------DFGMAKPLLKEDQSL---IQTQTLATIGYMAPEYGREGRVSTN 539 (628)
Q Consensus 500 -------------------------------------DFGla~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~ 539 (628)
+-|+.+.-....... .....+++.+|++| ++.+
T Consensus 110 ~e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~~~~~-------~~~~ 182 (286)
T 3uqc_A 110 AEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPATMPD-------ANPQ 182 (286)
T ss_dssp EECCCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCCCCTT-------CCHH
T ss_pred EEecCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEeccccCC-------CCch
Confidence 112221100000000 00112356677764 7899
Q ss_pred cchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCc
Q 037488 540 GDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESP 619 (628)
Q Consensus 540 ~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp 619 (628)
+|||||||++|||+||+.||.+...... ..................+..++.++.+++.+||+.||
T Consensus 183 ~Di~slG~il~elltg~~Pf~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP 248 (286)
T 3uqc_A 183 DDIRGIGASLYALLVNRWPLPEAGVRSG--------------LAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDG 248 (286)
T ss_dssp HHHHHHHHHHHHHHHSEECSCCCSBCCC--------------SEECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTS
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCcchh--------------hHHHHHHhccCCCChhhcccCCCHHHHHHHHHHcccCC
Confidence 9999999999999999999976432110 00000111111111122334567889999999999999
Q ss_pred ccCCCCCCC
Q 037488 620 EERVNAKEI 628 (628)
Q Consensus 620 ~~Rpt~~ev 628 (628)
++| |+.|+
T Consensus 249 ~~R-s~~el 256 (286)
T 3uqc_A 249 GIR-SASTL 256 (286)
T ss_dssp SCC-CHHHH
T ss_pred ccC-CHHHH
Confidence 999 98653
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-23 Score=226.26 Aligned_cols=344 Identities=16% Similarity=0.143 Sum_probs=206.5
Q ss_pred hccCCCCCCEEecCccC--------------------------CCCCCEEEccCCcceecCCcccc-CCCCCCEEeccCC
Q 037488 15 TIFNVSTLNSLYLQNVQ--------------------------LQNLEELLLWGNNFSGTIPSFIF-NASKLSRLELQMN 67 (628)
Q Consensus 15 ~~~~l~~L~~L~l~~n~--------------------------l~~L~~L~ls~N~l~~~~p~~~~-~l~~L~~L~L~~N 67 (628)
.+..++.|+.|+++++. +++|++|+|++|.+++..+..+. .+++|++|+|++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 45677899999998752 45899999999999877666665 6899999999999
Q ss_pred -ccccc-CccccCCCCCCCEEEccCccccCCCCCCcccc-cccCCCCCcEEEcccCCCCCCCchHHhcc---ccccceee
Q 037488 68 -SFYGF-IPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLS-SLSNCKYLKYFSFSNNSLDGILPRAIGNL---SQSMEIFW 141 (628)
Q Consensus 68 -~l~~~-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l---~~~l~~l~ 141 (628)
.++.. .+..+.++++|++|+|++|.++..... .+. ....+++|++|++++|. ..+....+..+ ...|+.|+
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~--~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~ 217 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH--WLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLK 217 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGG--GGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchH--HHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEe
Confidence 45432 334455899999999999998764321 122 23478899999999997 32333333322 24799999
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcC-------Cc-----------------------cccccccCCCCCCEeecc
Q 037488 142 MHSCNISGGIPEEISNLTNLIAIYLGGNKL-------NG-----------------------SIPIALGKLQKLQLLNLE 191 (628)
Q Consensus 142 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l-------~~-----------------------~~p~~~~~l~~L~~L~L~ 191 (628)
+++|...+.++..+..+++|+.|+++.+.. .+ .++..+..+++|++|+++
T Consensus 218 L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 218 LNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297 (594)
T ss_dssp CCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECT
T ss_pred cCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEcc
Confidence 999844444777788888888888655421 11 122222245566666666
Q ss_pred cCcccccCC-ccccCCCCCCEEEccCCcCccc-CCCCccCCCCCcEEEccC---------CcCCc--CCCCccCCCCCcE
Q 037488 192 YNQLEGSIP-DDLCRLAALFQLDLGSNKLSGF-VPASFGNLTNLRSLHLGS---------NQITS--IPSTLLNLKDILY 258 (628)
Q Consensus 192 ~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~---------n~l~~--lp~~~~~l~~L~~ 258 (628)
+|.+.+... ..+..+++|+.|++++| +... .+.....+++|+.|++++ +.++. +..-...+++|++
T Consensus 298 ~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 298 YATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred CCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence 666543211 12345666666666655 3211 111222356666666622 33332 1111112566666
Q ss_pred EEcCCCCCcCCCCCccc-CCccccEEEcC--C----CcCCCCC-----ccccCCCCCCCEEeCCCCcCcccCChhhcC-C
Q 037488 259 LNLSSNFFTGPLPLEIG-NLKVLIKIDLS--M----NNFSGVI-----PITIGYLKDLQYLFLEYNRLQGSIPDSIGD-L 325 (628)
Q Consensus 259 L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~~-----p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l 325 (628)
|.+..|.+++.....+. .+++|+.|+++ + |.++... +..+..+++|+.|++++ .++...+..+.. +
T Consensus 377 L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~ 455 (594)
T 2p1m_B 377 VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYA 455 (594)
T ss_dssp EEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHC
T ss_pred HHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhc
Confidence 66666666543333332 45667777776 3 3444211 11134566777777765 444433334443 6
Q ss_pred CCCCEEECcCCcccccCchhh-hcCCCCCEEEccCCcce
Q 037488 326 INLKSLDLSNNNLSGIIPISL-EKLLDLKDINVSFNKLE 363 (628)
Q Consensus 326 ~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~l~l~~N~l~ 363 (628)
++|+.|++++|.+++.....+ ..+++|+.|++++|+++
T Consensus 456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 677777777777654433333 55677777777777664
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=174.23 Aligned_cols=157 Identities=25% Similarity=0.275 Sum_probs=69.2
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEcc
Q 037488 160 NLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLG 239 (628)
Q Consensus 160 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 239 (628)
+|+.|++++|++++..+..+..+++|++|++++|++.+..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444455444443333334444444444444444443333334444444444444444444433344444444444444
Q ss_pred CCcCCcCCCC-ccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccC
Q 037488 240 SNQITSIPST-LLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSI 318 (628)
Q Consensus 240 ~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 318 (628)
+|+++.+|.. +..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .+++|+.|+++.|+++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 4444444332 2334444444444444444333334444444444444443331 2233444444444444444
Q ss_pred Chhhc
Q 037488 319 PDSIG 323 (628)
Q Consensus 319 ~~~~~ 323 (628)
|..++
T Consensus 182 p~~~~ 186 (208)
T 2o6s_A 182 RNSAG 186 (208)
T ss_dssp BCTTS
T ss_pred eccCc
Confidence 44433
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-20 Score=197.05 Aligned_cols=167 Identities=26% Similarity=0.334 Sum_probs=95.5
Q ss_pred CCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEc
Q 037488 159 TNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHL 238 (628)
Q Consensus 159 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 238 (628)
++|+.|+|++|+++ .+| ..+++|++|+|++|++++ +|. +.+ +|++|+|++|++++ +|. .+++|+.|+|
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 45666666666665 344 334566666666666654 444 433 56666666666655 333 4556666666
Q ss_pred cCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCC-------CEEeCCC
Q 037488 239 GSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDL-------QYLFLEY 311 (628)
Q Consensus 239 ~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~l~~ 311 (628)
++|.|+.+|. .+++|++|++++|.+++ +|. |. ++|+.|+|++|.++ .+|. +.. +| +.|+|++
T Consensus 148 s~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 148 DNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCS
T ss_pred CCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCC
Confidence 6666666655 34566666666666665 333 43 56666666666666 3333 332 45 6666666
Q ss_pred CcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcC
Q 037488 312 NRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKL 349 (628)
Q Consensus 312 n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 349 (628)
|+++ .+|..+..+++|+.|++++|.+++..|..+..+
T Consensus 217 N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred Ccce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 6666 455555556666666666666666666555543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=173.81 Aligned_cols=149 Identities=28% Similarity=0.333 Sum_probs=78.7
Q ss_pred EEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCc
Q 037488 163 AIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQ 242 (628)
Q Consensus 163 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (628)
.++++++.++ .+|..+ .++|++|++++|++.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4455555554 233322 3456666666666665544455566666666666666665555555556666666666666
Q ss_pred CCcCCCC-ccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcC
Q 037488 243 ITSIPST-LLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRL 314 (628)
Q Consensus 243 l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 314 (628)
++.+|.. +..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 5555443 33455555555555555544444445555555555555555444443444444444555444444
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=195.18 Aligned_cols=182 Identities=25% Similarity=0.304 Sum_probs=155.5
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEcc
Q 037488 160 NLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLG 239 (628)
Q Consensus 160 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 239 (628)
+|+.|++++|.+++ +|..+ +++|++|+|++|+++ .+| ..+++|+.|++++|++++ +|. +.. +|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999986 66655 378999999999998 566 457899999999999997 565 665 99999999
Q ss_pred CCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCC
Q 037488 240 SNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIP 319 (628)
Q Consensus 240 ~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 319 (628)
+|+|+.+|. .+++|++|++++|.+++ +|. .+++|+.|+|++|.+++ +|. +. ++|+.|+|++|+++ .+|
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 999999998 67999999999999997 444 57899999999999997 555 65 89999999999998 666
Q ss_pred hhhcCCCCC-------CEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCC
Q 037488 320 DSIGDLINL-------KSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPR 368 (628)
Q Consensus 320 ~~~~~l~~L-------~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~ 368 (628)
. +.. +| +.|++++|.|+. +|..+..+++|+.|++++|++++.+|.
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp C-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 6 654 77 999999999995 566677799999999999999987764
|
| >3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.8e-21 Score=189.80 Aligned_cols=184 Identities=12% Similarity=0.102 Sum_probs=110.5
Q ss_pred cCCCcc-cccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHh-hcccCCCcceeeeeccC----CCcc-
Q 037488 427 NGFSEN-NLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMM-KHIRHRNLIKIISSCSN----DDFK- 498 (628)
Q Consensus 427 ~~~~~~-~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~----~~~~- 498 (628)
++|... +.||+|+||.||+|.. .+++.||||+++.. ..+.+|++++ +..+||||+++++++.. +...
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 91 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 91 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEE
Confidence 456665 7799999999999987 67999999999642 3467888888 55699999999998754 1110
Q ss_pred -----c-------------------------------------cccccccccccCccccc----ccccccccccCccccc
Q 037488 499 -----A-------------------------------------DFGMAKPLLKEDQSLIQ----TQTLATIGYMAPEYGR 532 (628)
Q Consensus 499 -----~-------------------------------------DFGla~~~~~~~~~~~~----~~~~gt~~y~aPE~~~ 532 (628)
+ +-|+.+.-......... ...+--..|-..+...
T Consensus 92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~ 171 (299)
T 3m2w_A 92 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT 171 (299)
T ss_dssp EEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECT
T ss_pred EEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEeccccccccc
Confidence 0 11111110000000000 0000000111122334
Q ss_pred cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhh
Q 037488 533 EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAM 612 (628)
Q Consensus 533 ~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 612 (628)
+..|+.++||||+||++|||++|+.||........ ...................+..++.++.+++.
T Consensus 172 ~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 238 (299)
T 3m2w_A 172 GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI-------------SPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIR 238 (299)
T ss_dssp TCGGGGHHHHHHHHHHHHHHHHSSCSCCC--------------------CCSCCSSCTTCCSSCHHHHTTSCHHHHHHHH
T ss_pred cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhh-------------hHHHHHHHhhccccCCchhcccCCHHHHHHHH
Confidence 56799999999999999999999999965322110 00000111111111112223456788999999
Q ss_pred cccCCCcccCCCCCCC
Q 037488 613 KCTVESPEERVNAKEI 628 (628)
Q Consensus 613 ~cl~~dp~~Rpt~~ev 628 (628)
+||+.||++|||+.|+
T Consensus 239 ~~l~~dP~~Rps~~e~ 254 (299)
T 3m2w_A 239 NLLKTEPTQRMTITEF 254 (299)
T ss_dssp HHTCSSTTTSCCHHHH
T ss_pred HHcccChhhCCCHHHH
Confidence 9999999999998763
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=179.94 Aligned_cols=170 Identities=26% Similarity=0.351 Sum_probs=85.2
Q ss_pred CCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEE
Q 037488 157 NLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSL 236 (628)
Q Consensus 157 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 236 (628)
.+++|+.|++++|.+... + .+..+++|++|++++|++.+..+ +.++++|++|++++|++++. ..+..+++|+.|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 444555555555555432 2 24445555555555555543322 44555555555555555432 124444455555
Q ss_pred EccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcc
Q 037488 237 HLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQG 316 (628)
Q Consensus 237 ~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 316 (628)
++++|+++.++ .+..+++|+.|++++|.+++. ..++.+++|+.|++++|++++
T Consensus 118 ~L~~n~i~~~~-------------------------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 118 SLEHNGISDIN-------------------------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp ECTTSCCCCCG-------------------------GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred ECCCCcCCCCh-------------------------hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 55554444442 344455555555555555433 334455555555555555553
Q ss_pred cCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcce
Q 037488 317 SIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLE 363 (628)
Q Consensus 317 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~ 363 (628)
..+ +..+++|+.|++++|.++++ + .+..+++|+.|++++|++.
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred chh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 332 55555566666666655543 2 2555566666666666554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=171.11 Aligned_cols=154 Identities=22% Similarity=0.261 Sum_probs=101.4
Q ss_pred EEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCC--CccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCC
Q 037488 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS--TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMN 288 (628)
Q Consensus 211 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N 288 (628)
.+++++|.++. +|..+. ..++.|+|++|+++.++. .+..+++|++|++++|.+++..+..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45555555543 233222 234556666666655522 2445666666666666666655566677777777777777
Q ss_pred cCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCC
Q 037488 289 NFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIP 367 (628)
Q Consensus 289 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p 367 (628)
.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|++++|.++++.|..|..+++|+.|++++|++.+..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 7776666667777777777777777776667777777777777777777777777777777777777887777776554
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=183.89 Aligned_cols=178 Identities=27% Similarity=0.277 Sum_probs=99.6
Q ss_pred CEEEccCCcCCccccccccCCCCCCEeecccCcccccCCcccc-CCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccC
Q 037488 162 IAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLC-RLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGS 240 (628)
Q Consensus 162 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 240 (628)
+.++++++.++ .+|..+. +.++.|+|++|++++..+..+. ++++|++|+|++|+|++..+..|..+++|+.|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 35566666665 3443332 2355566666665555444444 555555555555555555555555555555555555
Q ss_pred CcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCCh
Q 037488 241 NQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPD 320 (628)
Q Consensus 241 n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 320 (628)
|+|+.+ .+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+.
T Consensus 98 N~l~~~-----------------------~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 98 NHLHTL-----------------------DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp SCCCEE-----------------------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred CcCCcC-----------------------CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 555544 344445555555555555555555555555555566666666665543333
Q ss_pred hh---cCCCCCCEEECcCCcccccCchhhhcCCC--CCEEEccCCcceec
Q 037488 321 SI---GDLINLKSLDLSNNNLSGIIPISLEKLLD--LKDINVSFNKLEGE 365 (628)
Q Consensus 321 ~~---~~l~~L~~L~l~~N~l~~~~~~~~~~l~~--L~~l~l~~N~l~~~ 365 (628)
.| ..+++|+.|+|++|.|+++.+..+..++. ++.|++++|++.+.
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 33 45667777777777777666566666665 36777777777654
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.4e-19 Score=166.63 Aligned_cols=150 Identities=26% Similarity=0.327 Sum_probs=85.0
Q ss_pred CEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCC
Q 037488 162 IAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSN 241 (628)
Q Consensus 162 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 241 (628)
+.++++++.++ .+|..+. ++|+.|++++|++.+..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 35666666665 3444332 46666777777666655556666666666666666666666666666666666666666
Q ss_pred cCCcCCCCc-cCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcC
Q 037488 242 QITSIPSTL-LNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRL 314 (628)
Q Consensus 242 ~l~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 314 (628)
+|+.+|..+ ..+++|++|++++|.+++..|..|..+++|+.|+|++|.+++..+..+..+++|++|++++|++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 666665442 3455555555555555554444555555555555555555444444444444444444444443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-19 Score=178.34 Aligned_cols=189 Identities=28% Similarity=0.363 Sum_probs=136.6
Q ss_pred CCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeec
Q 037488 111 YLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNL 190 (628)
Q Consensus 111 ~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 190 (628)
.+..+.+..+.+.+..+. ..+. .++.+++++|.+... + .+..+++|+.|++++|++++..+ +..+++|++|++
T Consensus 25 ~~~~~~l~~~~~~~~~~~--~~l~-~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l 97 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVTQ--NELN-SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHHTTCSCTTSEECH--HHHH-TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred HHHHHHhcCCCcccccch--hhcC-cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence 344445666666654332 3343 689999999999865 3 58899999999999999997655 899999999999
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCC
Q 037488 191 EYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPL 270 (628)
Q Consensus 191 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~ 270 (628)
++|++.+. ..+..+++|++|++++|++++. +.+..+++|+.|++++|+++.+ ..+..+++|++|++++|.+++..
T Consensus 98 ~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 98 DENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp CSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccch
Confidence 99999853 3589999999999999999864 4688899999999999988877 45666667777777776666544
Q ss_pred CCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCc
Q 037488 271 PLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQ 315 (628)
Q Consensus 271 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 315 (628)
+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|+++
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred h--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 3 55555666666666655532 2 2444445555555554443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=165.52 Aligned_cols=134 Identities=24% Similarity=0.295 Sum_probs=78.2
Q ss_pred CCcEEEccCCcCCcCCC-CccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCC
Q 037488 232 NLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLE 310 (628)
Q Consensus 232 ~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 310 (628)
+|+.|++++|.|+.+|. .+..+++|++|++++|.+++..|..|.++++|++|+|++|.++...+..|..+++|++|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 44445555555544433 33444555555555555554445555555556666666666655444555556666666666
Q ss_pred CCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceec
Q 037488 311 YNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGE 365 (628)
Q Consensus 311 ~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~ 365 (628)
+|++++..|..|..+++|+.|++++|.++++.+..|..+++|+.|++++|++.+.
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 6666655566666666666666666666666655666666666677777666543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-19 Score=194.94 Aligned_cols=173 Identities=27% Similarity=0.359 Sum_probs=101.3
Q ss_pred cCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcE
Q 037488 156 SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRS 235 (628)
Q Consensus 156 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 235 (628)
..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|++.+..+ +..+++|+.|+|++|.+.+. ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 445566666666666653 22 35566666666666666654333 55666666666666666542 24566666666
Q ss_pred EEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCc
Q 037488 236 LHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQ 315 (628)
Q Consensus 236 L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 315 (628)
|+|++|.+..++ .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|+++
T Consensus 114 L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 114 LSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 666666666553 355566666666666666543 345566666666666666665444 555666666666666665
Q ss_pred ccCChhhcCCCCCCEEECcCCccccc
Q 037488 316 GSIPDSIGDLINLKSLDLSNNNLSGI 341 (628)
Q Consensus 316 ~~~~~~~~~l~~L~~L~l~~N~l~~~ 341 (628)
+. ..+..+++|+.|+|++|.+.+.
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CC--hHHccCCCCCEEEccCCcCcCC
Confidence 32 2355666666666666666543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-19 Score=182.00 Aligned_cols=155 Identities=26% Similarity=0.240 Sum_probs=106.0
Q ss_pred cceeeccCCcccccCCcccc-CCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEcc
Q 037488 137 MEIFWMHSCNISGGIPEEIS-NLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLG 215 (628)
Q Consensus 137 l~~l~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 215 (628)
++.|++++|.+++..+..|. .+++|+.|+|++|++.+..+..|..+++|++|+|++|++.+..+..|.++++|++|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 34444444444444455555 67778888888888876666677778888888888888877666677778888888888
Q ss_pred CCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCc----cCCCCCcEEEcCCCCCcCCCCCcccCCcc--ccEEEcCCCc
Q 037488 216 SNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTL----LNLKDILYLNLSSNFFTGPLPLEIGNLKV--LIKIDLSMNN 289 (628)
Q Consensus 216 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~Ls~N~ 289 (628)
+|+|+...+..|..+++|+.|+|++|+|+.+|..+ ..+++|++|+|++|.++...+..+..++. ++.|+|++|.
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 88887777777788888888888888887777654 34666677777777666555455555554 2556666665
Q ss_pred CC
Q 037488 290 FS 291 (628)
Q Consensus 290 l~ 291 (628)
+.
T Consensus 201 ~~ 202 (361)
T 2xot_A 201 LE 202 (361)
T ss_dssp EE
T ss_pred cc
Confidence 54
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-19 Score=191.63 Aligned_cols=192 Identities=23% Similarity=0.324 Sum_probs=166.1
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEcc
Q 037488 160 NLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLG 239 (628)
Q Consensus 160 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 239 (628)
.+..+.++.+.+....+ +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+ +..+++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 34445666676665443 5678999999999999985 34 68999999999999999997655 8999999999999
Q ss_pred CCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCC
Q 037488 240 SNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIP 319 (628)
Q Consensus 240 ~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 319 (628)
+|.++.+| .+..+++|++|+|++|.+++. ..+..+++|+.|+|++|.+++. ..++.+++|+.|+|++|++.+..|
T Consensus 96 ~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 96 ENKIKDLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SSCCCCCT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCCCh-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 99999987 688899999999999999864 4588999999999999999875 567899999999999999997666
Q ss_pred hhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecC
Q 037488 320 DSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEI 366 (628)
Q Consensus 320 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~ 366 (628)
+..+++|+.|+|++|.++++ ..+..+++|+.|+|++|++.+..
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 89999999999999999875 35889999999999999998653
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=164.61 Aligned_cols=131 Identities=22% Similarity=0.253 Sum_probs=73.4
Q ss_pred CEEEccCCcCcccCC-CCccCCCCCcEEEccCCcCCcCCC-CccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCC
Q 037488 210 FQLDLGSNKLSGFVP-ASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSM 287 (628)
Q Consensus 210 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 287 (628)
++|+|++|++++..+ ..|..+++|+.|+|++|+|+.++. .+..+++|++|++++|.+++..+..|..+++|++|+|++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence 344444444443322 234444444445554444444433 344445555555555555554455555666666666666
Q ss_pred CcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccc
Q 037488 288 NNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSG 340 (628)
Q Consensus 288 N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 340 (628)
|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|.+..
T Consensus 115 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 66665556666666666666666666666656666666677777777776654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-18 Score=163.22 Aligned_cols=133 Identities=31% Similarity=0.359 Sum_probs=70.9
Q ss_pred CCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCC-ccCCCCCcEEEc
Q 037488 183 QKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPST-LLNLKDILYLNL 261 (628)
Q Consensus 183 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l 261 (628)
++|++|+|++|++.+..|..|..+++|++|+|++|+++...+..|..+++|+.|+|++|+|+.+|.. +..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 4455555555555544444455555555555555555444444455555555555555555554433 234555555555
Q ss_pred CCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcc
Q 037488 262 SSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQG 316 (628)
Q Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 316 (628)
++|.++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 555555 334445555555556666665555544555556666666666666553
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.1e-18 Score=161.41 Aligned_cols=154 Identities=27% Similarity=0.371 Sum_probs=80.7
Q ss_pred CEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCC
Q 037488 186 QLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNF 265 (628)
Q Consensus 186 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~ 265 (628)
+.++.+++.+. .+|..+. ++|++|+|++|.+++..|..|..+++|+.|+|++|+++.+|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~------------------ 80 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP------------------ 80 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------------
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC------------------
Confidence 34555555554 3343322 45555555555555555555555555555555555555554
Q ss_pred CcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchh
Q 037488 266 FTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPIS 345 (628)
Q Consensus 266 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 345 (628)
+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|+++++.+..
T Consensus 81 -----~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 81 -----VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp -----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred -----hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 333444444555555555554444444445555555555555554 44444555555555555555555544445
Q ss_pred hhcCCCCCEEEccCCcceecC
Q 037488 346 LEKLLDLKDINVSFNKLEGEI 366 (628)
Q Consensus 346 ~~~l~~L~~l~l~~N~l~~~~ 366 (628)
|..+++|+.|++++|++.+..
T Consensus 155 ~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTTCTTCCEEECTTSCBCTTB
T ss_pred HhCCCCCCEEEeeCCCccCCc
Confidence 555555555555555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-20 Score=204.37 Aligned_cols=216 Identities=22% Similarity=0.148 Sum_probs=115.3
Q ss_pred cCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCC
Q 037488 107 SNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQ 186 (628)
Q Consensus 107 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 186 (628)
..+++|+.|+|++|.++ .+|..++.+. .|+.|++++|......|..+ ..+...+..|..++.+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhcc
Confidence 45667777777777776 4566666665 46666665443211111000 01112334555555566666
Q ss_pred Eee-cccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCC
Q 037488 187 LLN-LEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNF 265 (628)
Q Consensus 187 ~L~-L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~ 265 (628)
.|+ ++.|.+. .|..+.+++|.++...+. .|+.|+|++|.|+++|. +..+++|+.|+|++|.
T Consensus 413 ~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~~------~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 413 AVDPMRAAYLD-----------DLRSKFLLENSVLKMEYA------DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp HHCGGGHHHHH-----------HHHHHHHHHHHHHHHHHT------TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC
T ss_pred cCcchhhcccc-----------hhhhhhhhcccccccCcc------CceEEEecCCCCCCCcC-ccccccCcEeecCccc
Confidence 665 4444332 122333344444332211 25555555555555554 5555555555555555
Q ss_pred CcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccC-ChhhcCCCCCCEEECcCCcccccCch
Q 037488 266 FTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSI-PDSIGDLINLKSLDLSNNNLSGIIPI 344 (628)
Q Consensus 266 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~ 344 (628)
++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|++|+|++|++++.. |..++.+++|+.|++++|.+++.+|.
T Consensus 475 l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 475 LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 55 344555566666666666666654 34 5556666666666666666554 66666666666666666666655432
Q ss_pred ---hhhcCCCCCEEE
Q 037488 345 ---SLEKLLDLKDIN 356 (628)
Q Consensus 345 ---~~~~l~~L~~l~ 356 (628)
.+..+++|+.|+
T Consensus 552 ~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 552 QERLAEMLPSVSSIL 566 (567)
T ss_dssp TTHHHHHCTTCSEEE
T ss_pred HHHHHHHCcccCccC
Confidence 233466666665
|
| >2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-20 Score=188.87 Aligned_cols=171 Identities=15% Similarity=0.120 Sum_probs=114.8
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccc--------hhHHHHHHHHHHHhhccc---------CCCccee
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY--------REAFKNFDIECDMMKHIR---------HRNLIKI 488 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~---------h~niv~l 488 (628)
.++|...+.||+|+||.||+|+. +|+.||||++.... ....+.+.+|+++++.++ |||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 46788889999999999999987 68999999997542 223467889999999886 6666555
Q ss_pred eee-----------------ccC-------------CCc-----------------------------------------
Q 037488 489 ISS-----------------CSN-------------DDF----------------------------------------- 497 (628)
Q Consensus 489 ~~~-----------------~~~-------------~~~----------------------------------------- 497 (628)
.++ +.. +..
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~l 177 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVA 177 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 443 211 100
Q ss_pred ---------------------------------------------cccccccccccccCcccccccccccccccCccccc
Q 037488 498 ---------------------------------------------KADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGR 532 (628)
Q Consensus 498 ---------------------------------------------~~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~ 532 (628)
.+|||+|+.... ...+||+.|||||++.
T Consensus 178 H~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~-------~~~~gt~~y~aPE~~~ 250 (336)
T 2vuw_A 178 EASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD-------GIVVFCDVSMDEDLFT 250 (336)
T ss_dssp HHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET-------TEEECCCCTTCSGGGC
T ss_pred HHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC-------CcEEEeecccChhhhc
Confidence 037887775422 2347999999999998
Q ss_pred cCccCcccchhhHhHH-HHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHh
Q 037488 533 EGRVSTNGDVYSFGIM-LIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLA 611 (628)
Q Consensus 533 ~~~~~~~~DVwS~Gvv-l~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 611 (628)
+.. +.++||||+|++ .+++++|..||... .|..... ..+.... ..........+..+++++.+|+
T Consensus 251 g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~--------~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~s~~~~dli 316 (336)
T 2vuw_A 251 GDG-DYQFDIYRLMKKENNNRWGEYHPYSNV--------LWLHYLT----DKMLKQM-TFKTKCNTPAMKQIKRKIQEFH 316 (336)
T ss_dssp CCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH--------HHHHHHH----HHHHHTC-CCSSCCCSHHHHHHHHHHHHHH
T ss_pred CCC-ccceehhhhhCCCCcccccccCCCcch--------hhhhHHH----Hhhhhhh-ccCcccchhhhhhcCHHHHHHH
Confidence 766 899999998777 78889999998531 1100000 0000000 0011111233456788999999
Q ss_pred hcccCCC
Q 037488 612 MKCTVES 618 (628)
Q Consensus 612 ~~cl~~d 618 (628)
.+||++|
T Consensus 317 ~~~L~~d 323 (336)
T 2vuw_A 317 RTMLNFS 323 (336)
T ss_dssp HHGGGSS
T ss_pred HHHhccC
Confidence 9999987
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-19 Score=171.90 Aligned_cols=169 Identities=20% Similarity=0.312 Sum_probs=95.9
Q ss_pred CCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEE
Q 037488 158 LTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLH 237 (628)
Q Consensus 158 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 237 (628)
+.++..+++++|.+++.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|++++..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344555566666665332 35566666677777666653 33 56666666667776666665443 66666777777
Q ss_pred ccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCccc
Q 037488 238 LGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGS 317 (628)
Q Consensus 238 L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 317 (628)
+++|+++.+|.... ++|++|++++|.+++. ..+..+++|+.|++++|++++. + .++.+++|+.|++++|++++.
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCCccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 77776666654322 5666666666665542 1355555555555555555543 2 344555555555555555533
Q ss_pred CChhhcCCCCCCEEECcCCcccc
Q 037488 318 IPDSIGDLINLKSLDLSNNNLSG 340 (628)
Q Consensus 318 ~~~~~~~l~~L~~L~l~~N~l~~ 340 (628)
..+..+++|+.|++++|.+..
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEEC
T ss_pred --HHhccCCCCCEEeCCCCcccC
Confidence 334555555555555555543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-20 Score=201.49 Aligned_cols=191 Identities=21% Similarity=0.179 Sum_probs=142.6
Q ss_pred cCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcE
Q 037488 156 SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRS 235 (628)
Q Consensus 156 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 235 (628)
..+++|+.|+|++|++. .+|..++.+++|+.|++++|......|..+ ..+.+.+..|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhccc
Confidence 45667777777777775 567777777777777776554110000000 001122334444555555555
Q ss_pred EE--------------ccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCC
Q 037488 236 LH--------------LGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYL 301 (628)
Q Consensus 236 L~--------------L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 301 (628)
|+ +++|.++.+|. ..|+.|++++|.+++ +|. ++.+++|+.|+|++|.++ .+|..++.+
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred CcchhhcccchhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence 55 44445555443 258999999999997 455 999999999999999999 778899999
Q ss_pred CCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccC-chhhhcCCCCCEEEccCCcceecCCC
Q 037488 302 KDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGII-PISLEKLLDLKDINVSFNKLEGEIPR 368 (628)
Q Consensus 302 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~l~l~~N~l~~~~p~ 368 (628)
++|+.|+|++|++++ +| .++.+++|+.|++++|.+++.. |..+..+++|+.|++++|++++.+|.
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 999999999999996 66 7999999999999999999887 99999999999999999999987764
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-18 Score=157.44 Aligned_cols=132 Identities=23% Similarity=0.291 Sum_probs=98.8
Q ss_pred cEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCC-cccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCC
Q 037488 234 RSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPL-EIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYN 312 (628)
Q Consensus 234 ~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n 312 (628)
+.+++++|.++.+|..+.. ++++|++++|.+++..+. .|..+++|++|+|++|++++..|..|..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5677777777777765543 677777777777765554 3677777777788777777777777777778888888888
Q ss_pred cCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCC
Q 037488 313 RLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIP 367 (628)
Q Consensus 313 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p 367 (628)
++++..+..|..+++|+.|++++|++++..|..+..+++|+.|++++|++.+.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 8877777777777888888888888877777777778888888888888776654
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-18 Score=158.16 Aligned_cols=153 Identities=16% Similarity=0.228 Sum_probs=84.4
Q ss_pred cCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEE
Q 037488 180 GKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYL 259 (628)
Q Consensus 180 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L 259 (628)
..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.++ .+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~------------------------~~~~-~l~~l~~L~~L 93 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA------------------------TNYN-PISGLSNLERL 93 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC------------------------SCCG-GGTTCTTCCEE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC------------------------Ccch-hhhcCCCCCEE
Confidence 34455556666665555 233 345555555555555544 3332 33444555555
Q ss_pred EcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCc-CcccCChhhcCCCCCCEEECcCCcc
Q 037488 260 NLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNR-LQGSIPDSIGDLINLKSLDLSNNNL 338 (628)
Q Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~N~l 338 (628)
++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|++++|+ ++ .+| .+..+++|+.|++++|.+
T Consensus 94 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 94 RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp EEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCC
T ss_pred EeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCC
Confidence 555555554444555555666666666666655555555666666666666665 43 333 466666666666666666
Q ss_pred cccCchhhhcCCCCCEEEccCCcce
Q 037488 339 SGIIPISLEKLLDLKDINVSFNKLE 363 (628)
Q Consensus 339 ~~~~~~~~~~l~~L~~l~l~~N~l~ 363 (628)
++.. .+..+++|+.|++++|++.
T Consensus 172 ~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 172 HDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCCT--TGGGCSSCCEEEECBC---
T ss_pred cChH--HhccCCCCCEEEeeCcccC
Confidence 6532 4566667777777776654
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-18 Score=167.55 Aligned_cols=171 Identities=22% Similarity=0.293 Sum_probs=149.4
Q ss_pred CCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEE
Q 037488 181 KLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLN 260 (628)
Q Consensus 181 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~ 260 (628)
.+.++..+++++|.+.+.. .+..+++|+.|++++|.++.. + .+..+++|+.|++++|+++.+|. +..+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 4567788899999998543 578899999999999999864 4 78999999999999999999987 88999999999
Q ss_pred cCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccc
Q 037488 261 LSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSG 340 (628)
Q Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 340 (628)
+++|.+++..+. .. ++|+.|++++|++++. + .+..+++|+.|++++|++++. + .+..+++|+.|++++|.+++
T Consensus 92 L~~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNLNGI--PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCCTTC--CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcCcc--cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 999999875432 23 8999999999999864 3 588999999999999999864 4 68999999999999999997
Q ss_pred cCchhhhcCCCCCEEEccCCcceec
Q 037488 341 IIPISLEKLLDLKDINVSFNKLEGE 365 (628)
Q Consensus 341 ~~~~~~~~l~~L~~l~l~~N~l~~~ 365 (628)
. ..+..+++|+.|++++|++.+.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 7 6788999999999999998865
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-18 Score=194.55 Aligned_cols=196 Identities=19% Similarity=0.174 Sum_probs=105.6
Q ss_pred CCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCC
Q 037488 81 RNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTN 160 (628)
Q Consensus 81 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~ 160 (628)
+.++.|+|.+|.+...+. ..|+.++|+.|.|.+. .+..|.+. ..+..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~~~~-----------~~l~~l~Ls~~~i~~~---------------~~~~n~~~-~~~~~~~~l~~ 225 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ-----------ALLQHKKLSQYSIDED---------------DDIENRMV-MPKDSKYDDQL 225 (727)
T ss_dssp ----------------------------------------------------------------------------CCCC
T ss_pred CccceEEeeCCCCCcchh-----------hHhhcCccCcccccCc---------------ccccccee-cChhhhccCCC
Confidence 445666666666554321 2345555555555422 12233333 45667778888
Q ss_pred CCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccC
Q 037488 161 LIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGS 240 (628)
Q Consensus 161 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 240 (628)
|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.++++|++|+|++|+|+ .+|..|+.+++|++|+|++
T Consensus 226 L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 226 WHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCS
T ss_pred CcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCC
Confidence 888888888887 56666668888888888888887 67777888888888888888887 5577788888888888888
Q ss_pred CcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCcc-ccEEEcCCCcCCCCCccccCCCCCCCEEeCCCC
Q 037488 241 NQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKV-LIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYN 312 (628)
Q Consensus 241 n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n 312 (628)
|.|+.+|..+..+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.. |+.|++++|
T Consensus 303 N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 303 NMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp SCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred CCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 888888887878888888888888888777766654322 223667777777766643 445555555
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-17 Score=152.59 Aligned_cols=152 Identities=14% Similarity=0.202 Sum_probs=93.5
Q ss_pred cCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcE
Q 037488 156 SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRS 235 (628)
Q Consensus 156 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 235 (628)
..+++|+.|++++|.+. .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|++++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44556666666666665 334 45666666666666665542 235666666666666666666555666666666666
Q ss_pred EEccCCcCCc-CCCCccCCCCCcEEEcCCCC-CcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCc
Q 037488 236 LHLGSNQITS-IPSTLLNLKDILYLNLSSNF-FTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNR 313 (628)
Q Consensus 236 L~L~~n~l~~-lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 313 (628)
|++++|+++. .|..+..+++|++|++++|. ++. +| .+..+++|+.|++++|.+++. + .+..+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 6666666664 44555666666777776666 443 33 466667777777777776643 2 45666777777777776
Q ss_pred Cc
Q 037488 314 LQ 315 (628)
Q Consensus 314 ~~ 315 (628)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 64
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-18 Score=191.25 Aligned_cols=189 Identities=24% Similarity=0.244 Sum_probs=103.3
Q ss_pred EccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCC
Q 037488 165 YLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT 244 (628)
Q Consensus 165 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (628)
++..|.+. ..|..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|..+++|++|+|++|.|+
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 44455554 55667777888888888888877 56666667788888888888887 56777778888888888888888
Q ss_pred cCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCC-CCEEeCCCCcCcccCChhhc
Q 037488 245 SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKD-LQYLFLEYNRLQGSIPDSIG 323 (628)
Q Consensus 245 ~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~l~~n~~~~~~~~~~~ 323 (628)
.+|..+..+++|++|+|++|.++ .+|..|+.+++|+.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~--- 359 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH--- 359 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc---
Confidence 88877777888888888888776 45666788888888888888887777766543321 22366777777776665
Q ss_pred CCCCCCEEECcCC--------cccccCchhhhcCCCCCEEEccCCcce
Q 037488 324 DLINLKSLDLSNN--------NLSGIIPISLEKLLDLKDINVSFNKLE 363 (628)
Q Consensus 324 ~l~~L~~L~l~~N--------~l~~~~~~~~~~l~~L~~l~l~~N~l~ 363 (628)
.|+.|++++| .+.+..+..+..+..+....+++|-+.
T Consensus 360 ---~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 360 ---ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---C-----------------------------------------CCC
T ss_pred ---ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 3445556555 222222333334444444555555543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-17 Score=165.90 Aligned_cols=272 Identities=13% Similarity=0.100 Sum_probs=169.3
Q ss_pred CCCCCEEecCcc----------C-CCCCCEEEccCCcce--ecCCccccCCCCCCEEeccCCcccccCccccCC------
Q 037488 19 VSTLNSLYLQNV----------Q-LQNLEELLLWGNNFS--GTIPSFIFNASKLSRLELQMNSFYGFIPNTFGN------ 79 (628)
Q Consensus 19 l~~L~~L~l~~n----------~-l~~L~~L~ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~------ 79 (628)
+.+|+.|.++++ + +++|++|||++|++. ...+..+. .+..+.+..| .+.+.+|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~---~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMAN---FVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTT---EECTTTTEEEETTEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccc---cccccccccc---ccCHHHhcccccccc
Confidence 456777777764 1 677999999999887 32222222 2344444444 234556666
Q ss_pred --CCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCc----ccccCCc
Q 037488 80 --LRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCN----ISGGIPE 153 (628)
Q Consensus 80 --l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~----~~~~~~~ 153 (628)
+++|+.|+|.+ .++.+.. .+|.+|++|+.+++++|.+..+.+.+|..+. .+..+....+. .......
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~-----~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~-~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIED-----AAFKGCDNLKICQIRKKTAPNLLPEALADSV-TAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECT-----TTTTTCTTCCEEEBCCSSCCEECTTSSCTTT-CEEEECTTCTHHHHTSTTTTTS
T ss_pred cccCCCcEEECCc-cccchhH-----HHhhcCcccceEEcCCCCccccchhhhcCCC-ceEEecCcchhhhhcccccccc
Confidence 77777777766 5665543 2466677777777777766666666665543 22222222211 1112233
Q ss_pred cccCCCCCC-EEEccCCcCCccccccc----cCCCCCCEeecccCcccccCCccc-cCCCCCCEEEccCCcCcccCCCCc
Q 037488 154 EISNLTNLI-AIYLGGNKLNGSIPIAL----GKLQKLQLLNLEYNQLEGSIPDDL-CRLAALFQLDLGSNKLSGFVPASF 227 (628)
Q Consensus 154 ~~~~l~~L~-~L~L~~n~l~~~~p~~~----~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~ 227 (628)
.|.++.+|+ .+.+.... .++..+ ....++..+.+.++-.... ...+ ..+++|+.++|++|+++.+.+.+|
T Consensus 171 ~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~l~~~~~~L~~l~L~~n~i~~I~~~aF 246 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNAD-FKLIRDYMPNLVSLDISKTNATTIPDFTF 246 (329)
T ss_dssp CEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHH-HHHHHHHCTTCCEEECTTBCCCEECTTTT
T ss_pred ccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHH-HHHHHHhcCCCeEEECCCCCcceecHhhh
Confidence 455666666 44443321 222211 1244556666655422111 1111 236788888888888887777788
Q ss_pred cCCCCCcEEEccCCcCCcCCC-CccCCCCCc-EEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCC
Q 037488 228 GNLTNLRSLHLGSNQITSIPS-TLLNLKDIL-YLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQ 305 (628)
Q Consensus 228 ~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 305 (628)
.++++|+.|+|++| ++.++. .|.++.+|+ .+++.+ .++.+.+..|.++++|+.++++.|.++.+.+..|.++++|+
T Consensus 247 ~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 88888888888887 777765 455788888 888887 67767778888889999999888888877788888888888
Q ss_pred EEeC
Q 037488 306 YLFL 309 (628)
Q Consensus 306 ~L~l 309 (628)
.++.
T Consensus 325 ~ly~ 328 (329)
T 3sb4_A 325 LIYK 328 (329)
T ss_dssp EEEC
T ss_pred hhcc
Confidence 8864
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-16 Score=143.92 Aligned_cols=130 Identities=28% Similarity=0.385 Sum_probs=98.2
Q ss_pred cEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCc
Q 037488 234 RSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNR 313 (628)
Q Consensus 234 ~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 313 (628)
+.+++++|.++.+|..+. ++|++|++++|.++ .+|..|..+++|+.|+|++|.+++..+..|..+++|++|+|++|+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 466777777777776543 46777777777776 445667777777777888787777777777778888888888888
Q ss_pred CcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecC
Q 037488 314 LQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEI 366 (628)
Q Consensus 314 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~ 366 (628)
+++..+..|..+++|+.|++++|.++.+.+..|..+++|+.|++++|++.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 87777777888888888888888888777767778888888888888887544
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-15 Score=155.39 Aligned_cols=262 Identities=10% Similarity=0.093 Sum_probs=150.6
Q ss_pred CCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCc
Q 037488 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLK 113 (628)
Q Consensus 34 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~ 113 (628)
.++.+.+.+ .++.+.+.+|.++ +|+.+.+..| ++.+...+|.+. +|+.+.+.. .++.+.. .+|.+|++|+
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~-----~aF~~c~~L~ 183 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKE-----DIFYYCYNLK 183 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECS-----STTTTCTTCC
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehH-----HHhhCcccCC
Confidence 344444432 3444555555554 5666666544 555555666553 466666654 3443332 2455666666
Q ss_pred EEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccC
Q 037488 114 YFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYN 193 (628)
Q Consensus 114 ~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 193 (628)
.+++++|.++.+... .|. .++|+.+.+..+ +......+|.++++|+.+++..|
T Consensus 184 ~l~l~~n~l~~I~~~-------------------------aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 184 KADLSKTKITKLPAS-------------------------TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp EEECTTSCCSEECTT-------------------------TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT
T ss_pred eeecCCCcceEechh-------------------------hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC
Confidence 666666555544333 333 345555555533 44444445666666666666543
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCC-----cCC-CCccCCCCCcEEEcCCCCCc
Q 037488 194 QLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT-----SIP-STLLNLKDILYLNLSSNFFT 267 (628)
Q Consensus 194 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~lp-~~~~~l~~L~~L~l~~n~l~ 267 (628)
++.....+|.+ .+|+.+.+. +.++.+...+|.++++|+.+++.+|.+. .++ ..|..+++|+.+.+.. .++
T Consensus 237 -l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~ 312 (401)
T 4fdw_A 237 -VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR 312 (401)
T ss_dssp -CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred -ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE
Confidence 34344445555 566666663 4455555666666666666666666554 343 3445566777777763 355
Q ss_pred CCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCC-CCCEEECcCCcc
Q 037488 268 GPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLI-NLKSLDLSNNNL 338 (628)
Q Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~N~l 338 (628)
......|.++.+|+.+++..| ++.+....|.++ +|+.+++.+|.+....+..|.+++ +++.|++..+.+
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 555666777777777777544 555556677777 777777777777655666676664 567777766554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.67 E-value=6e-16 Score=141.28 Aligned_cols=133 Identities=25% Similarity=0.285 Sum_probs=102.3
Q ss_pred CcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCC
Q 037488 233 LRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYN 312 (628)
Q Consensus 233 L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n 312 (628)
.+.+++++|.++.+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4567777777777775543 57778888888777766666777888888888888887766666777888888888888
Q ss_pred cCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCC
Q 037488 313 RLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIP 367 (628)
Q Consensus 313 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p 367 (628)
++++..+..+..+++|+.|++++|.++++.+..+..+++|+.|++++|++.+.+|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8887666677788888888888888887766667778888888888888877655
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=158.43 Aligned_cols=259 Identities=15% Similarity=0.136 Sum_probs=174.4
Q ss_pred CCCCCEEEccCccccCCCCCCcccccccC-CCCCcEEEcccCCCC--CCCchHHhccccccceeeccCCcccccCCcccc
Q 037488 80 LRNLNRLGLNDNYLTSSTPKLNFLSSLSN-CKYLKYFSFSNNSLD--GILPRAIGNLSQSMEIFWMHSCNISGGIPEEIS 156 (628)
Q Consensus 80 l~~L~~L~L~~N~l~~~~~~~~~~~~~~~-l~~L~~L~l~~n~l~--~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~ 156 (628)
+.+|+.|.++++ +... .+..+.. +++|++|||++|++. ...+..+. .+..+.+..+. ..+..|.
T Consensus 24 ~~~l~~L~l~g~-i~~~-----~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~----~~~~~~~~~~~---I~~~aF~ 90 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAE-----DFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP----NGKFYIYMANF---VPAYAFS 90 (329)
T ss_dssp HHHCSEEEEEEE-ECHH-----HHHHHHHSCTTCCEEEEEEEEECCEEESSSSSG----GGCCEEECTTE---ECTTTTE
T ss_pred hCceeEEEEecc-ccHH-----HHHHHHHhhccCeEEecCcceeEEecCcccccc----ccccccccccc---cCHHHhc
Confidence 567889999875 2110 1123333 789999999999988 22222221 13334444442 3345677
Q ss_pred C--------CCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCc----CcccCC
Q 037488 157 N--------LTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNK----LSGFVP 224 (628)
Q Consensus 157 ~--------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~----l~~~~~ 224 (628)
+ +++|+.|+|.+ .++...+.+|.++++|+.+++++|.+....+..|.++.++..+.+..+. ...+..
T Consensus 91 ~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~ 169 (329)
T 3sb4_A 91 NVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH 169 (329)
T ss_dssp EEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT
T ss_pred ccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc
Confidence 7 99999999988 7886667789999999999999999887888888888888777766532 222334
Q ss_pred CCccCCCCCc-EEEccCCcCCcCCCCc----------------------------cCCCCCcEEEcCCCCCcCCCCCccc
Q 037488 225 ASFGNLTNLR-SLHLGSNQITSIPSTL----------------------------LNLKDILYLNLSSNFFTGPLPLEIG 275 (628)
Q Consensus 225 ~~~~~l~~L~-~L~L~~n~l~~lp~~~----------------------------~~l~~L~~L~l~~n~l~~~~~~~~~ 275 (628)
..|.++.+|+ .+.+.... .++..+ ..+++|+.+++++|.++.+.+..|.
T Consensus 170 ~~f~~~~~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~ 247 (329)
T 3sb4_A 170 FAFIEGEPLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA 247 (329)
T ss_dssp SCEEESCCCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred cccccccccceeEEecCCC--cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence 4566666665 34333211 111100 0256777888887777777777777
Q ss_pred CCccccEEEcCCCcCCCCCccccCCCCCCC-EEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCE
Q 037488 276 NLKVLIKIDLSMNNFSGVIPITIGYLKDLQ-YLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKD 354 (628)
Q Consensus 276 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 354 (628)
++.+|+.+++.+| ++.+.+..|.++.+|+ .+++.+ .++...+.+|.++++|+.|++++|.++.+.+..|.++++|+.
T Consensus 248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 7878888888776 6666667777777787 787777 566566677778888888888777777777777777777777
Q ss_pred EE
Q 037488 355 IN 356 (628)
Q Consensus 355 l~ 356 (628)
++
T Consensus 326 ly 327 (329)
T 3sb4_A 326 IY 327 (329)
T ss_dssp EE
T ss_pred hc
Confidence 65
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.6e-16 Score=142.90 Aligned_cols=129 Identities=23% Similarity=0.280 Sum_probs=87.1
Q ss_pred CEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCC--ccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCC
Q 037488 210 FQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPST--LLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSM 287 (628)
Q Consensus 210 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 287 (628)
+.+++++|.++. +|..+. .+|+.|++++|+++.++.. +..+++|++|++++|.+++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 455666665543 333332 2566666666666666542 55666777777777777766666777777777777777
Q ss_pred CcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCccccc
Q 037488 288 NNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGI 341 (628)
Q Consensus 288 N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 341 (628)
|++++..+..|..+++|++|+|++|++++..|..+..+++|+.|++++|.+.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 777776666677777777777777777777777777777777777777777654
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-16 Score=141.40 Aligned_cols=131 Identities=24% Similarity=0.188 Sum_probs=57.3
Q ss_pred CCCEEEccCCcCc-ccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcC
Q 037488 208 ALFQLDLGSNKLS-GFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLS 286 (628)
Q Consensus 208 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 286 (628)
+|+.|++++|.++ +.+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+++.+|..+..+++|+.|+++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 4444444444443 23334444444444444444444444 334444444444444444443333333344444444444
Q ss_pred CCcCCCCCc-cccCCCCCCCEEeCCCCcCcccCC---hhhcCCCCCCEEECcCCccc
Q 037488 287 MNNFSGVIP-ITIGYLKDLQYLFLEYNRLQGSIP---DSIGDLINLKSLDLSNNNLS 339 (628)
Q Consensus 287 ~N~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~N~l~ 339 (628)
+|.+++... ..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.+.
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 444443211 334444444444444444443322 23444444444444444443
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-15 Score=151.56 Aligned_cols=266 Identities=14% Similarity=0.153 Sum_probs=204.5
Q ss_pred CCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccc
Q 037488 55 NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLS 134 (628)
Q Consensus 55 ~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 134 (628)
.+..++.+.+. |.++.|...+|.+. +|+.+.+..| ++.+.. .+|.++ +|+.+.+..
T Consensus 111 ~~~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~-----~aF~~~-~L~~i~lp~--------------- 166 (401)
T 4fdw_A 111 ILKGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGD-----MAFFNS-TVQEIVFPS--------------- 166 (401)
T ss_dssp ECSSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECT-----TTTTTC-CCCEEECCT---------------
T ss_pred ecCCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECH-----HhcCCC-CceEEEeCC---------------
Confidence 34566666665 34566666666663 5666666655 444432 234443 455555432
Q ss_pred cccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEc
Q 037488 135 QSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDL 214 (628)
Q Consensus 135 ~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 214 (628)
.+...-+.+|.++++|+.+++.+|+++.....+|. ..+|+.+.|..+ +..+...+|.++++|+.+++
T Consensus 167 -----------~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 167 -----------TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp -----------TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred -----------CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 23334456788999999999999999866666676 589999999855 77677789999999999999
Q ss_pred cCCcCcccCCCCccCCCCCcEEEccCCcCCcCCC-CccCCCCCcEEEcCCCCCc-----CCCCCcccCCccccEEEcCCC
Q 037488 215 GSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFT-----GPLPLEIGNLKVLIKIDLSMN 288 (628)
Q Consensus 215 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~Ls~N 288 (628)
..| ++.+...+|.+ .+|+.+.+ .+.++.++. .|..+++|+.+.+.+|.+. ...+..|.++++|+.+++. +
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~ 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E 309 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T
T ss_pred CCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C
Confidence 875 67677788988 79999999 456888854 6668999999999988765 4667889999999999999 4
Q ss_pred cCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCC-CCCEEEccCCcce
Q 037488 289 NFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLL-DLKDINVSFNKLE 363 (628)
Q Consensus 289 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~l~l~~N~l~ 363 (628)
.++.+....|.++.+|+.+.|..| ++.....+|.++ +|+.+++.+|.+..+.+..|..++ +++.|++..+.+.
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 577777889999999999999765 666778899999 999999999999888788888874 7889999887654
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=139.93 Aligned_cols=128 Identities=26% Similarity=0.309 Sum_probs=104.5
Q ss_pred CEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCc
Q 037488 210 FQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNN 289 (628)
Q Consensus 210 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (628)
+.+++++|.++. +|..+. ++|+.|++++|.++.+|..+..+++|++|++++|.+++..+..|.++++|++|+|++|+
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 467777777764 344332 57888888888888888778888888888888888888777888888899999999999
Q ss_pred CCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccc
Q 037488 290 FSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSG 340 (628)
Q Consensus 290 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 340 (628)
+++..|..|..+++|++|+|++|+++...+..|..+++|+.|++++|.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 988888888888999999999999987667778889999999999998863
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6.7e-16 Score=139.65 Aligned_cols=133 Identities=22% Similarity=0.209 Sum_probs=120.4
Q ss_pred CCCCcEEEccCCcCC--cCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEE
Q 037488 230 LTNLRSLHLGSNQIT--SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYL 307 (628)
Q Consensus 230 l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 307 (628)
.++|+.|++++|.++ .+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 478999999999999 8998888999999999999999876 778999999999999999998788888889999999
Q ss_pred eCCCCcCcccC-ChhhcCCCCCCEEECcCCcccccCc---hhhhcCCCCCEEEccCCccee
Q 037488 308 FLEYNRLQGSI-PDSIGDLINLKSLDLSNNNLSGIIP---ISLEKLLDLKDINVSFNKLEG 364 (628)
Q Consensus 308 ~l~~n~~~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~l~l~~N~l~~ 364 (628)
++++|++++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999998643 2789999999999999999998766 578999999999999998764
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=135.24 Aligned_cols=126 Identities=21% Similarity=0.256 Sum_probs=76.9
Q ss_pred CCCcEEEccCCcCC--cCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEe
Q 037488 231 TNLRSLHLGSNQIT--SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLF 308 (628)
Q Consensus 231 ~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 308 (628)
++|+.|++++|.++ .+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555555 4555555555555555555555544 4455666666666666666655565555566667777
Q ss_pred CCCCcCccc-CChhhcCCCCCCEEECcCCcccccCc---hhhhcCCCCCEEEcc
Q 037488 309 LEYNRLQGS-IPDSIGDLINLKSLDLSNNNLSGIIP---ISLEKLLDLKDINVS 358 (628)
Q Consensus 309 l~~n~~~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~l~l~ 358 (628)
+++|++++. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777666642 23556667777777777777766555 456667777777665
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=6.6e-16 Score=136.66 Aligned_cols=127 Identities=22% Similarity=0.181 Sum_probs=76.6
Q ss_pred CCCCEEEccCCcCc-ccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEc
Q 037488 207 AALFQLDLGSNKLS-GFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDL 285 (628)
Q Consensus 207 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 285 (628)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 34555555555554 34444555555555555555555555 44555556666666666666545555555666666666
Q ss_pred CCCcCCCC-CccccCCCCCCCEEeCCCCcCcccCC---hhhcCCCCCCEEECc
Q 037488 286 SMNNFSGV-IPITIGYLKDLQYLFLEYNRLQGSIP---DSIGDLINLKSLDLS 334 (628)
Q Consensus 286 s~N~l~~~-~p~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~ 334 (628)
++|.+++. .+..++.+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66666643 23556667777777777777765544 467777777777765
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=132.50 Aligned_cols=110 Identities=23% Similarity=0.221 Sum_probs=53.2
Q ss_pred CCcEEEccCCcCCcCCCC-ccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCC
Q 037488 232 NLRSLHLGSNQITSIPST-LLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLE 310 (628)
Q Consensus 232 ~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 310 (628)
+|+.|++++|+++.+|.. +..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 344444444444443322 2334444444444444443333444445555555555555554444444555555555555
Q ss_pred CCcCcccCChhhcCCCCCCEEECcCCccccc
Q 037488 311 YNRLQGSIPDSIGDLINLKSLDLSNNNLSGI 341 (628)
Q Consensus 311 ~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 341 (628)
+|++++..+..+..+++|+.|++++|.+.+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 5555544444445555666666666655543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-15 Score=135.83 Aligned_cols=132 Identities=20% Similarity=0.152 Sum_probs=72.8
Q ss_pred cCCCCCcEEEccCCcCCcCCCCccCC-CCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCE
Q 037488 228 GNLTNLRSLHLGSNQITSIPSTLLNL-KDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQY 306 (628)
Q Consensus 228 ~~l~~L~~L~L~~n~l~~lp~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 306 (628)
..+.+|+.|++++|.++.+|. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 344455555555555554432 2222 2555555555555543 34555556666666666665444444455666666
Q ss_pred EeCCCCcCcccCCh--hhcCCCCCCEEECcCCcccccCch---hhhcCCCCCEEEccCCcce
Q 037488 307 LFLEYNRLQGSIPD--SIGDLINLKSLDLSNNNLSGIIPI---SLEKLLDLKDINVSFNKLE 363 (628)
Q Consensus 307 L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~l~l~~N~l~ 363 (628)
|++++|++. .+|. .+..+++|+.|++++|.++...+. .+..+++|+.|+++.|...
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 666666664 3343 566666666666666666543322 3666677777777766554
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-15 Score=136.02 Aligned_cols=109 Identities=23% Similarity=0.270 Sum_probs=54.2
Q ss_pred ccCCCCCCEEEccCCcCCccccccccCC-CCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCC
Q 037488 155 ISNLTNLIAIYLGGNKLNGSIPIALGKL-QKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNL 233 (628)
Q Consensus 155 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 233 (628)
+..+.+|+.|++++|.++. +|. +..+ ++|++|++++|.+++. ..+..+++|++|++++|++++..+..|..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4455566666666666653 233 2222 2555566655555543 345555555555555555554433333555555
Q ss_pred cEEEccCCcCCcCCC--CccCCCCCcEEEcCCCCCc
Q 037488 234 RSLHLGSNQITSIPS--TLLNLKDILYLNLSSNFFT 267 (628)
Q Consensus 234 ~~L~L~~n~l~~lp~--~~~~l~~L~~L~l~~n~l~ 267 (628)
+.|++++|+++.+|. .+..+++|++|++++|.++
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 555555555554443 3334444444444444443
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.53 E-value=7e-13 Score=137.36 Aligned_cols=307 Identities=14% Similarity=0.070 Sum_probs=207.3
Q ss_pred CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCC
Q 037488 32 LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKY 111 (628)
Q Consensus 32 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~ 111 (628)
+.+|+.+.|.. .++.+...+|.++++|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+.. .+|.++..
T Consensus 70 c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~-----~aF~~~~~ 141 (394)
T 4fs7_A 70 CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV-----EAFKGCDF 141 (394)
T ss_dssp CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT-----TTTTTCCC
T ss_pred CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc-----eeeecccc
Confidence 34556666653 366677788999999999999754 77788888999999988877654 333221 24555544
Q ss_pred CcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecc
Q 037488 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLE 191 (628)
Q Consensus 112 L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 191 (628)
++...... +..+...+|..+. .|+.+.+..+ +.......|.++.+|+.+.+..+ ++.....+|.++..|+.+.+.
T Consensus 142 ~~~~~~~~--~~~i~~~aF~~c~-~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 142 KEITIPEG--VTVIGDEAFATCE-SLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp SEEECCTT--CCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred cccccCcc--ccccchhhhcccC-CCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 33332222 2223344555554 4666666433 33344566778888888888765 444455567788888888777
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCC
Q 037488 192 YNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLP 271 (628)
Q Consensus 192 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 271 (628)
.+... +.+.+....+|+.+.+..+ ++.+....|..+..|+.+.+..+...--...+.....++.+....+.+ ..
T Consensus 217 ~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i---~~ 290 (394)
T 4fs7_A 217 NSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV---PE 290 (394)
T ss_dssp TTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE---CT
T ss_pred CCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceee---cc
Confidence 65432 2334445567888877643 444556678888888888887764433344556677788777766543 33
Q ss_pred CcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCC
Q 037488 272 LEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLD 351 (628)
Q Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 351 (628)
..|..+.+|+.+.+..+ ++.+....|.++.+|+.+++..+ ++..-..+|.++.+|+.+++..+ ++.+...+|.++.+
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 56778888888888755 55566677888899999999754 66556778889999999999776 77677788999999
Q ss_pred CCEEEccCC
Q 037488 352 LKDINVSFN 360 (628)
Q Consensus 352 L~~l~l~~N 360 (628)
|+.+++..+
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 999988654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.7e-17 Score=150.53 Aligned_cols=152 Identities=26% Similarity=0.309 Sum_probs=72.7
Q ss_pred CCCCCEeecccCcccccCCc------cccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCC
Q 037488 182 LQKLQLLNLEYNQLEGSIPD------DLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKD 255 (628)
Q Consensus 182 l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~ 255 (628)
...++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++.+|..+..+++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~ 94 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADT 94 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCc
Confidence 34444445555544444333 44555555555555555544 23 455555555555555555555443333444
Q ss_pred CcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCC-hhhcCCCCCCEEECc
Q 037488 256 ILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIP-DSIGDLINLKSLDLS 334 (628)
Q Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~ 334 (628)
|++|++++|.+++. | .+.. +++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 95 L~~L~L~~N~l~~l-~-~~~~------------------------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 95 LEELWISYNQIASL-S-GIEK------------------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp CSEEEEEEEECCCH-H-HHHH------------------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred CCEEECcCCcCCcC-C-cccc------------------------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence 44444444444431 1 2333 4444444444444442211 244555555555555
Q ss_pred CCcccccCch----------hhhcCCCCCEEEccCCcce
Q 037488 335 NNNLSGIIPI----------SLEKLLDLKDINVSFNKLE 363 (628)
Q Consensus 335 ~N~l~~~~~~----------~~~~l~~L~~l~l~~N~l~ 363 (628)
+|.+.+..|. .+..+++|+.|| +|+++
T Consensus 149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 5555443332 255666666664 44443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=124.67 Aligned_cols=106 Identities=22% Similarity=0.218 Sum_probs=71.5
Q ss_pred CcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCC
Q 037488 233 LRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYN 312 (628)
Q Consensus 233 L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n 312 (628)
.+.|++++|.++++|..+. ++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4677777777777776553 66777777777777666666777777777777777776666656666666666666666
Q ss_pred cCcccCChhhcCCCCCCEEECcCCcccc
Q 037488 313 RLQGSIPDSIGDLINLKSLDLSNNNLSG 340 (628)
Q Consensus 313 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 340 (628)
++++..+..|..+++|+.|++++|.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 6665555556666666666666666653
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-16 Score=148.12 Aligned_cols=120 Identities=25% Similarity=0.309 Sum_probs=93.0
Q ss_pred CcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhc
Q 037488 244 TSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIG 323 (628)
Q Consensus 244 ~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 323 (628)
+.+|..+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++ +| .+.
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~ 112 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIE 112 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccc
Confidence 3344456666777777777777765 44 6777777888888888877 456666667889999999999885 44 588
Q ss_pred CCCCCCEEECcCCcccccCc-hhhhcCCCCCEEEccCCcceecCCC
Q 037488 324 DLINLKSLDLSNNNLSGIIP-ISLEKLLDLKDINVSFNKLEGEIPR 368 (628)
Q Consensus 324 ~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~l~l~~N~l~~~~p~ 368 (628)
.+++|+.|++++|.+++..+ ..+..+++|+.|++++|++.+.+|.
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 89999999999999986543 5788999999999999999887664
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-13 Score=123.11 Aligned_cols=105 Identities=21% Similarity=0.201 Sum_probs=74.6
Q ss_pred cEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCc
Q 037488 234 RSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNR 313 (628)
Q Consensus 234 ~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 313 (628)
+.+++++|.++.+|..+. ++|++|++++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 577777787777777654 677777777777777767777777777777777777776655556667777777777777
Q ss_pred CcccCChhhcCCCCCCEEECcCCcccc
Q 037488 314 LQGSIPDSIGDLINLKSLDLSNNNLSG 340 (628)
Q Consensus 314 ~~~~~~~~~~~l~~L~~L~l~~N~l~~ 340 (628)
+++..+..|..+++|+.|++++|.+..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 765555556667777777777776653
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=121.64 Aligned_cols=109 Identities=21% Similarity=0.190 Sum_probs=98.7
Q ss_pred CcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcC
Q 037488 256 ILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSN 335 (628)
Q Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 335 (628)
.+.+++++|.++. +|..+ .++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 5789999999986 45444 37899999999999999899999999999999999999988888899999999999999
Q ss_pred CcccccCchhhhcCCCCCEEEccCCcceecCC
Q 037488 336 NNLSGIIPISLEKLLDLKDINVSFNKLEGEIP 367 (628)
Q Consensus 336 N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p 367 (628)
|+++++.+..|..+++|+.|++++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 99999888889999999999999999987665
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-12 Score=131.76 Aligned_cols=295 Identities=15% Similarity=0.051 Sum_probs=218.0
Q ss_pred cceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCC
Q 037488 44 NFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLD 123 (628)
Q Consensus 44 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 123 (628)
+++.+...+|.++.+|+.+.+.. .++.|...+|.++.+|+.+++.++ ++.+.. .+|.++++|+.+.+..+ +.
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-----~aF~~c~~L~~i~~p~~-l~ 129 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGR-----CTFSGCYALKSILLPLM-LK 129 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECT-----TTTTTCTTCCCCCCCTT-CC
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccc-----hhhcccccchhhcccCc-ee
Confidence 46667788999999999999984 588888999999999999999866 555443 36888999998877654 44
Q ss_pred CCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccc
Q 037488 124 GILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDL 203 (628)
Q Consensus 124 ~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 203 (628)
.+...+|.... ..+..... .....-..+|.++++|+.+.+.++. .......|.++.+|+.+.+..+ +.......|
T Consensus 130 ~i~~~aF~~~~-~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F 204 (394)
T 4fs7_A 130 SIGVEAFKGCD-FKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCF 204 (394)
T ss_dssp EECTTTTTTCC-CSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTT
T ss_pred eecceeeeccc-ccccccCc--cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhh
Confidence 45556666553 22222222 2222345678899999999997654 3355567888999999999876 555666788
Q ss_pred cCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCC-CCccCCCCCcEEEcCCCCCcCCCCCcccCCccccE
Q 037488 204 CRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP-STLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIK 282 (628)
Q Consensus 204 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 282 (628)
.++..|+.+.+..+... +.+.+....+|+.+.+..+ ++.+. ..+.....++.+.+..+... .....|.....++.
T Consensus 205 ~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~ 280 (394)
T 4fs7_A 205 AECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKK 280 (394)
T ss_dssp TTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCE
T ss_pred ccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccce
Confidence 88999998888766543 2334445578888888643 45554 34557788999999877543 56677888888988
Q ss_pred EEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCC
Q 037488 283 IDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFN 360 (628)
Q Consensus 283 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N 360 (628)
+....+.+ ....|..+.+|+.+.+..+ ++.....+|.++.+|+.+++.++ ++.+...+|.++.+|+.+++..|
T Consensus 281 ~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 281 VIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp EEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred eccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 88776543 3456778899999999765 55566778999999999999754 77777889999999999998765
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.4e-13 Score=119.30 Aligned_cols=108 Identities=23% Similarity=0.274 Sum_probs=96.8
Q ss_pred cEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCC
Q 037488 257 LYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNN 336 (628)
Q Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N 336 (628)
+.+++++|.++. +|..+. ++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 689999999975 555443 78999999999999999999999999999999999999877777899999999999999
Q ss_pred cccccCchhhhcCCCCCEEEccCCcceecCC
Q 037488 337 NLSGIIPISLEKLLDLKDINVSFNKLEGEIP 367 (628)
Q Consensus 337 ~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p 367 (628)
+|+++.+..|..+++|+.|++++|++.+..+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 9998887779999999999999999986554
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-11 Score=123.81 Aligned_cols=108 Identities=10% Similarity=0.099 Sum_probs=57.8
Q ss_pred ccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCC
Q 037488 250 LLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLK 329 (628)
Q Consensus 250 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 329 (628)
|.....|+.+.+..+.. ......|.++..|+.+.+. +.++.+....|.++.+|+.+.|..+ ++..-..+|.++.+|+
T Consensus 261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 33445555555544332 2334455555666666654 3344344455566666666666543 3334445566666666
Q ss_pred EEECcCCcccccCchhhhcCCCCCEEEccCCc
Q 037488 330 SLDLSNNNLSGIIPISLEKLLDLKDINVSFNK 361 (628)
Q Consensus 330 ~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~ 361 (628)
.+.+..+ ++.+....|.++.+|+.+++.+|.
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 6666433 444555566666666666666553
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-10 Score=116.24 Aligned_cols=321 Identities=12% Similarity=0.138 Sum_probs=169.6
Q ss_pred cccCCChhccCCC-CCCEEecCccCCCCCCEEEccCCcceecCCccccCCCCCCEEeccCCc---ccccCccccCCCCCC
Q 037488 8 LVGVVPTTIFNVS-TLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNS---FYGFIPNTFGNLRNL 83 (628)
Q Consensus 8 l~~~~p~~~~~l~-~L~~L~l~~n~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~---l~~~~~~~f~~l~~L 83 (628)
.+.+-..+|.+.. .|+.+.+-++ ++.+...+|.++++|+.+.+..|. ++.+...+|.+..+|
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s--------------vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L 116 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT--------------VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSEL 116 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT--------------CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTC
T ss_pred eeEcCHhhccCCCCcCEEEEECCC--------------eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccc
Confidence 3445566677763 4666665432 333444555555555555555442 444445555555555
Q ss_pred CEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCE
Q 037488 84 NRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIA 163 (628)
Q Consensus 84 ~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~ 163 (628)
+.+.+..+ ++.+.. ..|.++.+|+.+.+..+ +..+...+|..+. .|+.+.+..+ +...-..+|.. .+|+.
T Consensus 117 ~~i~~~~~-~~~I~~-----~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~-~L~~i~~~~~-~~~I~~~aF~~-~~l~~ 186 (394)
T 4gt6_A 117 TDIPILDS-VTEIDS-----EAFHHCEELDTVTIPEG-VTSVADGMFSYCY-SLHTVTLPDS-VTAIEERAFTG-TALTQ 186 (394)
T ss_dssp CBCGGGTT-CSEECT-----TTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTT-CCCSE
T ss_pred eeeccCCc-cceehh-----hhhhhhcccccccccce-eeeecccceeccc-ccccccccce-eeEeccccccc-cceeE
Confidence 55554433 222211 23445555555555432 2223333333332 3343333322 22222233332 44555
Q ss_pred EEccCCcCCccccccccCCCCCCEeecccCcccccCCc--------------cccCCCCCCEEEccCCcCcccCCCCccC
Q 037488 164 IYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPD--------------DLCRLAALFQLDLGSNKLSGFVPASFGN 229 (628)
Q Consensus 164 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 229 (628)
+.+..+-. ..-..+|....++.......+.... ... .+.....+..+.+. +.+......+|..
T Consensus 187 i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~ 263 (394)
T 4gt6_A 187 IHIPAKVT-RIGTNAFSECFALSTITSDSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDS 263 (394)
T ss_dssp EEECTTCC-EECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTT
T ss_pred EEECCccc-ccccchhhhccccceeccccccccc-ccceeecccccccccccccccccccceEEcC-CcceEcccceeee
Confidence 55543322 2333345555555555443332221 110 01122234444443 3344455667888
Q ss_pred CCCCcEEEccCCcCCcCC-CCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEe
Q 037488 230 LTNLRSLHLGSNQITSIP-STLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLF 308 (628)
Q Consensus 230 l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 308 (628)
+.+|+.+.+..+. ..+. ..+.+..+|+.+.+.. .++......|.++.+|+.+++..+ ++.+....|.++.+|+.+.
T Consensus 264 c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 264 CAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp CSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 8888888886543 3343 4556678888888863 455566677888888888888754 5556667888889999998
Q ss_pred CCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcc
Q 037488 309 LEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKL 362 (628)
Q Consensus 309 l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l 362 (628)
+..+ ++..-..+|.++.+|+.+++.++.... ..+.....|+.+.+..|.+
T Consensus 341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 341 IPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred ECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 8755 554556788899999999988876532 3456677888887776644
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-13 Score=147.91 Aligned_cols=123 Identities=14% Similarity=0.007 Sum_probs=71.4
Q ss_pred ccccCCccEEEEEEe-cCCcEEEEEEeecc----------chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc---
Q 037488 434 LIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ----------YREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 434 ~ig~G~~g~V~~~~~-~~~~~vavK~~~~~----------~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~--- 498 (628)
..+.|+.|.+..++. -.|+.+|||++... .....+.|.+|+++|+++ .|+||++++++++++...
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV 320 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV 320 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence 456677777766543 45889999999642 123456799999999999 799999999998765422
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+|+...... ....+
T Consensus 321 MEyv~G~~L~d~i~~~~~l~~~~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~--~~~~t 398 (569)
T 4azs_A 321 MEKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDC--SWPTN 398 (569)
T ss_dssp EECCCSEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEESCC-----CCSHH
T ss_pred EecCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHCCceeccCchHhEEECCCCCEEEeecccCeeCCCCC--ccccC
Confidence 4999999764432 22345
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCC
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPT 559 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~ 559 (628)
.+||++|||||++.+ .+..++|+||.|++++++.++..++
T Consensus 399 ~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~~ 438 (569)
T 4azs_A 399 LVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSNW 438 (569)
T ss_dssp HHHHHHHHHHHHC------------------CCCCTTHHHH
T ss_pred ceechhhccHHHhCC-CCCCcccccccccchhhhccccchh
Confidence 689999999999875 5778899999999999887765543
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=124.74 Aligned_cols=101 Identities=19% Similarity=0.219 Sum_probs=46.4
Q ss_pred EccCC-cCCcCCCCccCCCCCcEEEcCC-CCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcC
Q 037488 237 HLGSN-QITSIPSTLLNLKDILYLNLSS-NFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRL 314 (628)
Q Consensus 237 ~L~~n-~l~~lp~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 314 (628)
+++++ .|+++|. +..+++|++|+|++ |.+++..+..|.++++|+.|+|++|++++..|..|..+++|++|+|++|++
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44444 4444444 44444444444443 444444444444444444444444444444444444444444444444444
Q ss_pred cccCChhhcCCCCCCEEECcCCccc
Q 037488 315 QGSIPDSIGDLINLKSLDLSNNNLS 339 (628)
Q Consensus 315 ~~~~~~~~~~l~~L~~L~l~~N~l~ 339 (628)
++..+..|..++ |+.|+|.+|.+.
T Consensus 93 ~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 93 ESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ceeCHHHcccCC-ceEEEeeCCCcc
Confidence 433333333333 444444444443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.7e-11 Score=122.17 Aligned_cols=103 Identities=23% Similarity=0.210 Sum_probs=70.9
Q ss_pred EEEccCC-cCCccccccccCCCCCCEeeccc-CcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccC
Q 037488 163 AIYLGGN-KLNGSIPIALGKLQKLQLLNLEY-NQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGS 240 (628)
Q Consensus 163 ~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 240 (628)
.++++++ .++ .+|. +..+++|++|+|++ |++.+..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3466666 665 3555 77777777777775 777766666677777777777777777777777777777777777777
Q ss_pred CcCCcCCCCccCCCCCcEEEcCCCCCc
Q 037488 241 NQITSIPSTLLNLKDILYLNLSSNFFT 267 (628)
Q Consensus 241 n~l~~lp~~~~~l~~L~~L~l~~n~l~ 267 (628)
|+|+.+|..++....|++|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 777777665554334777777776665
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-12 Score=137.42 Aligned_cols=130 Identities=13% Similarity=0.093 Sum_probs=88.6
Q ss_pred CcccccccCCccEEEEEEecCCcEEEEEEeeccc--------hhHHHHHHHHHHHhhcccCCCcc--eeeeeccCC----
Q 037488 430 SENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY--------REAFKNFDIECDMMKHIRHRNLI--KIISSCSND---- 495 (628)
Q Consensus 430 ~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv--~l~~~~~~~---- 495 (628)
...+.||+|+||.||+|... ++.+|+|+..... ....+.+.+|++++++++||||+ +++++..+.
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSYL-DFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEECS-SCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEEC-CCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 44578999999999999554 7889999864321 11245689999999999999999 444432111
Q ss_pred -------C-------------------------------------------ccccccccccccccCccc-----cccccc
Q 037488 496 -------D-------------------------------------------FKADFGMAKPLLKEDQSL-----IQTQTL 520 (628)
Q Consensus 496 -------~-------------------------------------------~~~DFGla~~~~~~~~~~-----~~~~~~ 520 (628)
+ ..+|||+|+......... ...+.+
T Consensus 418 mE~~~ggsL~~~l~~~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~ 497 (540)
T 3en9_A 418 MSYINGKLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDKDLYIIDFGLGKISNLDEDKAVDLIVFKKAVL 497 (540)
T ss_dssp EECCCSEEHHHHSTTCTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESSSEEECCCTTCEECCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECCeEEEEECccCEECCCccccccchhhhhhhhc
Confidence 1 014999999764322111 123567
Q ss_pred ccccccCcccccc--CccCcccchhhHhHHHHHHhhCCCCCC
Q 037488 521 ATIGYMAPEYGRE--GRVSTNGDVYSFGIMLIETFTRKKPTD 560 (628)
Q Consensus 521 gt~~y~aPE~~~~--~~~~~~~DVwS~Gvvl~e~ltg~~p~~ 560 (628)
||++|||||++.+ ..|+.++|+||..+-..+.+.++.+|.
T Consensus 498 GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 498 STHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred CCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 9999999999987 568999999999999999998888774
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-13 Score=139.68 Aligned_cols=172 Identities=19% Similarity=0.170 Sum_probs=83.7
Q ss_pred CCCCEEEccCCcCCccccccccC-----CCCCCEeecccCcccccCCccc-cCCCCCCEEEccCCcCcccCCCCc-----
Q 037488 159 TNLIAIYLGGNKLNGSIPIALGK-----LQKLQLLNLEYNQLEGSIPDDL-CRLAALFQLDLGSNKLSGFVPASF----- 227 (628)
Q Consensus 159 ~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~----- 227 (628)
+.|+.|+|++|.++......+.. .++|++|+|++|.+.......+ ..+.+|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45667777777665432222221 2466666666666543211111 123345555555555543222111
Q ss_pred cCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCC----CccccCCCCC
Q 037488 228 GNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGV----IPITIGYLKD 303 (628)
Q Consensus 228 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~ 303 (628)
...++|+.|+|++|.|+.... ..++..+...++|++|+|++|.++.. +...+...++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~-------------------~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~ 212 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGV-------------------AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ 212 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHH-------------------HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred hcCCccceeeCCCCCCChHHH-------------------HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence 123344444444444432100 01112223444555555555555421 1233444566
Q ss_pred CCEEeCCCCcCccc----CChhhcCCCCCCEEECcCCcccccCchhhhcC
Q 037488 304 LQYLFLEYNRLQGS----IPDSIGDLINLKSLDLSNNNLSGIIPISLEKL 349 (628)
Q Consensus 304 L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 349 (628)
|++|+|++|.++.. +...+...++|+.|+|++|.|+......+..+
T Consensus 213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 77777777777542 33444556778888888888775544444443
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.4e-09 Score=106.01 Aligned_cols=296 Identities=13% Similarity=0.114 Sum_probs=155.6
Q ss_pred CCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCC
Q 037488 33 QNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYL 112 (628)
Q Consensus 33 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L 112 (628)
.+|+.+.+.. .++.+...+|.++.+|+.++|.. .++.|...+|.+. +|+.+.+..+ ++.+.. .+|.+. +|
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~-----~aF~~~-~L 115 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGD-----YVFQGT-DL 115 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECT-----TTTTTC-CC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEecc-----ceeccC-Cc
Confidence 3456666643 46667777888888888888864 4777778888876 6777777544 444332 234443 68
Q ss_pred cEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeeccc
Q 037488 113 KYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEY 192 (628)
Q Consensus 113 ~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 192 (628)
+.+.+..+ +..+...+|... .++...+.. .++..-...|..+.+++.+.+..+.......... . .
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~--~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~---------~--~ 180 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNS--SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV---------L--Y 180 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTC--CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTE---------E--E
T ss_pred ccccCCCc-cccccccccccc--eeeeeeccc-eeeccccchhcccccccccccccccceeecccce---------e--c
Confidence 88887654 333333444433 233222221 2233334455666666666655443321110000 0 0
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCC-CCccCCCCCcEEEcCCCCCcCCCC
Q 037488 193 NQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIP-STLLNLKDILYLNLSSNFFTGPLP 271 (628)
Q Consensus 193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~ 271 (628)
+.. ......+.....+..+.+.... .......+....+|+.+.+..+ +..++ ..+.....|+.+.+..+ ++....
T Consensus 181 ~~~-~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~ 256 (379)
T 4h09_A 181 NKN-KTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS 256 (379)
T ss_dssp ETT-SSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT
T ss_pred ccc-cceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc
Confidence 000 0011122333344444433222 2233445555555666555433 33332 23444556666666544 333444
Q ss_pred CcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCC
Q 037488 272 LEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLD 351 (628)
Q Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 351 (628)
..|.+..+|+.+.+..+ +.......|.++.+|+.+.+.++.++.....+|.++.+|+.+.|..+ ++.+...+|.++.+
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 55666666666666533 33344455666667777777666665555566677777777776543 55555566666677
Q ss_pred CCEEEccC
Q 037488 352 LKDINVSF 359 (628)
Q Consensus 352 L~~l~l~~ 359 (628)
|+.+.+..
T Consensus 335 L~~i~ip~ 342 (379)
T 4h09_A 335 LSTISYPK 342 (379)
T ss_dssp CCCCCCCT
T ss_pred CCEEEECC
Confidence 77666644
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.9e-12 Score=130.84 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=62.1
Q ss_pred CCCEEEccCCcCCccccccc-----cCCCCCCEeecccCccccc----CCccccCCCCCCEEEccCCcCccc----CCCC
Q 037488 160 NLIAIYLGGNKLNGSIPIAL-----GKLQKLQLLNLEYNQLEGS----IPDDLCRLAALFQLDLGSNKLSGF----VPAS 226 (628)
Q Consensus 160 ~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~ 226 (628)
+|+.|+|++|.++......+ ...++|++|+|++|.++.. ++..+...++|++|+|++|.++.. ++..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 45555555555543222222 1345566666666665431 223334566666666666666532 2344
Q ss_pred ccCCCCCcEEEccCCcCCc-----CCCCccCCCCCcEEEcCCCCCcC
Q 037488 227 FGNLTNLRSLHLGSNQITS-----IPSTLLNLKDILYLNLSSNFFTG 268 (628)
Q Consensus 227 ~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~ 268 (628)
+...++|+.|+|++|.|+. +...+...++|++|+|++|.++.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 5556677777777777764 23334455778888888887764
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-08 Score=102.67 Aligned_cols=269 Identities=11% Similarity=0.082 Sum_probs=169.5
Q ss_pred ccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHH
Q 037488 51 SFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAI 130 (628)
Q Consensus 51 ~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 130 (628)
.++....+|+.+.+. ..++.|...+|.++.+|+.+.|..+ ++.+.. .+|.++ +|+.+.+..+ ++.+...+|
T Consensus 40 ~~~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~-----~aF~~c-~l~~i~~~~~-l~~I~~~aF 110 (379)
T 4h09_A 40 PWYKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGD-----GAFADT-KLQSYTGMER-VKKFGDYVF 110 (379)
T ss_dssp TTGGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECT-----TTTTTC-CCCEEEECTT-CCEECTTTT
T ss_pred cccccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEech-----hhhcCC-CCceEECCce-eeEecccee
Confidence 345667789998887 4577888889999999999999755 655543 356666 5666665432 333333333
Q ss_pred hccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCC
Q 037488 131 GNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210 (628)
Q Consensus 131 ~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 210 (628)
.. .+|+.+.+..+ +...-...|.+. +|+.+.+..+ ++......|..+..++
T Consensus 111 ~~--------------------------~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~ 161 (379)
T 4h09_A 111 QG--------------------------TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLE 161 (379)
T ss_dssp TT--------------------------CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCC
T ss_pred cc--------------------------CCcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhccccccc
Confidence 32 23444444332 111112223222 3333333222 2223333444555555
Q ss_pred EEEccCCcCcc------------cCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCc
Q 037488 211 QLDLGSNKLSG------------FVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLK 278 (628)
Q Consensus 211 ~L~L~~n~l~~------------~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 278 (628)
.+.+..+.... .....+.....+..+.+...........+....+|+.+.+..+ ++......|.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~ 240 (379)
T 4h09_A 162 KIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMK 240 (379)
T ss_dssp EEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCS
T ss_pred ccccccccceeecccceecccccceeccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCc
Confidence 55444332211 1112344455566666554433333445566788899888765 4445667788899
Q ss_pred cccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEcc
Q 037488 279 VLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVS 358 (628)
Q Consensus 279 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~ 358 (628)
.|+.+.+..+ ++.+....|..+.+|+.+.+..+ +.......|.++.+|+.+.+.++.++.+....|.++.+|+.+++.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 9999999876 55566778888999999999765 554666789999999999999999988888999999999999997
Q ss_pred CC
Q 037488 359 FN 360 (628)
Q Consensus 359 ~N 360 (628)
.+
T Consensus 319 ~~ 320 (379)
T 4h09_A 319 TA 320 (379)
T ss_dssp TT
T ss_pred cc
Confidence 55
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-09 Score=108.93 Aligned_cols=84 Identities=20% Similarity=0.222 Sum_probs=54.9
Q ss_pred CCccccEEEcCCCcCCCCCcccc---CCCCCCCEEeCCCCcCccc----CChhhcCCCCCCEEECcCCcccccCchhhhc
Q 037488 276 NLKVLIKIDLSMNNFSGVIPITI---GYLKDLQYLFLEYNRLQGS----IPDSIGDLINLKSLDLSNNNLSGIIPISLEK 348 (628)
Q Consensus 276 ~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 348 (628)
.+++|+.|+|++|.+....+..+ ..+++|++|+|+.|.+... ++..+..+++|+.|++++|.++...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 45677777777777653222111 2467888899988888753 2333455688999999999887544344443
Q ss_pred -CCCCCEEEccCCc
Q 037488 349 -LLDLKDINVSFNK 361 (628)
Q Consensus 349 -l~~L~~l~l~~N~ 361 (628)
+ ...++++.|+
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 3 4668888876
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.68 E-value=5e-09 Score=105.96 Aligned_cols=136 Identities=19% Similarity=0.190 Sum_probs=80.6
Q ss_pred ccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcc--cCCccccEEEcCC--CcCCCC-----Cccc
Q 037488 227 FGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEI--GNLKVLIKIDLSM--NNFSGV-----IPIT 297 (628)
Q Consensus 227 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~--N~l~~~-----~p~~ 297 (628)
+..+++|+.|+|++|.-..++. + .+++|++|++..+.++......+ ..+++|+.|+|+. |...+. +...
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 3445566666665552123333 2 25566666666655432211112 2466667766642 211111 0011
Q ss_pred c--CCCCCCCEEeCCCCcCcccCChhhc---CCCCCCEEECcCCcccccC----chhhhcCCCCCEEEccCCccee
Q 037488 298 I--GYLKDLQYLFLEYNRLQGSIPDSIG---DLINLKSLDLSNNNLSGII----PISLEKLLDLKDINVSFNKLEG 364 (628)
Q Consensus 298 ~--~~l~~L~~L~l~~n~~~~~~~~~~~---~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~l~l~~N~l~~ 364 (628)
+ ..+++|++|+|.+|.+....+..+. .+++|++|+|+.|.+.+.- +..+..+++|+.|++++|.++.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 2 3478999999999998753333332 5789999999999997642 3334567899999999998763
|
| >1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-08 Score=98.70 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=54.1
Q ss_pred hhhHHHHHhhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccch------------------hHHHHHHHHHHHhh
Q 037488 417 LTYLELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYR------------------EAFKNFDIECDMMK 478 (628)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~E~~~l~ 478 (628)
+...........|...+.||+|+||.||+|...+|+.||||+++.... .....+.+|+++++
T Consensus 80 ~~l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~ 159 (282)
T 1zar_A 80 YSLHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQ 159 (282)
T ss_dssp HHHHHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHH
Confidence 344455566677778899999999999999987799999999964321 13456899999999
Q ss_pred cccCCCccee
Q 037488 479 HIRHRNLIKI 488 (628)
Q Consensus 479 ~l~h~niv~l 488 (628)
+++|+++...
T Consensus 160 ~l~~~~v~~~ 169 (282)
T 1zar_A 160 KLQGLAVPKV 169 (282)
T ss_dssp HTTTSSSCCE
T ss_pred hccCCCcCeE
Confidence 9985544443
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.4e-07 Score=90.40 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=18.2
Q ss_pred CCCCcEEEcCCCCCcCC--CCCcccCCccccEEEcCCCcCC
Q 037488 253 LKDILYLNLSSNFFTGP--LPLEIGNLKVLIKIDLSMNNFS 291 (628)
Q Consensus 253 l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~ 291 (628)
+++|+.|+|++|.+++. +|..+..+++|+.|+|++|+++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 34455555555555442 2233344455555555555544
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.8e-07 Score=85.20 Aligned_cols=113 Identities=17% Similarity=0.124 Sum_probs=62.3
Q ss_pred cccCCCCCCEEEccCC-cCCcc----ccccccCCCCCCEeecccCccccc----CCccccCCCCCCEEEccCCcCccc--
Q 037488 154 EISNLTNLIAIYLGGN-KLNGS----IPIALGKLQKLQLLNLEYNQLEGS----IPDDLCRLAALFQLDLGSNKLSGF-- 222 (628)
Q Consensus 154 ~~~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~-- 222 (628)
.+...++|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.|...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4556677778888877 66532 233455566777777777776532 122334445666777777766542
Q ss_pred --CCCCccCCCCCcEEEc--cCCcCCc-----CCCCccCCCCCcEEEcCCCCC
Q 037488 223 --VPASFGNLTNLRSLHL--GSNQITS-----IPSTLLNLKDILYLNLSSNFF 266 (628)
Q Consensus 223 --~~~~~~~l~~L~~L~L--~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l 266 (628)
+...+...++|++|+| ++|.+.. +...+...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2334455556666666 5565543 222223334555555555544
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.3e-07 Score=84.51 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=8.3
Q ss_pred hcCCCCCEEEccCCcc
Q 037488 347 EKLLDLKDINVSFNKL 362 (628)
Q Consensus 347 ~~l~~L~~l~l~~N~l 362 (628)
...++|++|++++|.+
T Consensus 148 ~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 148 EKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHCSSCCEEECCCSSH
T ss_pred HhCCCcCEEeccCCCC
Confidence 3345555555555544
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.15 E-value=5.5e-07 Score=86.19 Aligned_cols=78 Identities=22% Similarity=0.306 Sum_probs=41.7
Q ss_pred CCCCCCEeecccCcccc--cCCccccCCCCCCEEEccCCcCcccCCCCccCCC--CCcEEEccCCcCCc-CCC-------
Q 037488 181 KLQKLQLLNLEYNQLEG--SIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLT--NLRSLHLGSNQITS-IPS------- 248 (628)
Q Consensus 181 ~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~-lp~------- 248 (628)
++++|+.|+|++|+|.+ .+|..+..+++|+.|+|++|+|++. ..+..+. +|+.|+|++|.+.. +|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45566666666666654 2234445566666666666666543 2223333 66666666666653 331
Q ss_pred CccCCCCCcEEE
Q 037488 249 TLLNLKDILYLN 260 (628)
Q Consensus 249 ~~~~l~~L~~L~ 260 (628)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 133456666654
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.54 E-value=4.5e-05 Score=67.51 Aligned_cols=83 Identities=12% Similarity=0.074 Sum_probs=46.0
Q ss_pred cccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCc-CcccCChhhcCC----CCCCEEECcCCc-ccccCchhhhcCCCC
Q 037488 279 VLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNR-LQGSIPDSIGDL----INLKSLDLSNNN-LSGIIPISLEKLLDL 352 (628)
Q Consensus 279 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~l~~N~-l~~~~~~~~~~l~~L 352 (628)
.|+.||++++.++..--..+..+++|++|+|++|. ++..--..+..+ ++|+.|++++|. |+..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45566666665544333344566666666666664 443222334443 257777777653 554333345566777
Q ss_pred CEEEccCCc
Q 037488 353 KDINVSFNK 361 (628)
Q Consensus 353 ~~l~l~~N~ 361 (628)
+.|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777776653
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.41 E-value=3.9e-05 Score=67.90 Aligned_cols=34 Identities=15% Similarity=-0.050 Sum_probs=17.0
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEeecccC
Q 037488 160 NLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYN 193 (628)
Q Consensus 160 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 193 (628)
.|+.||++++.++..--..+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555554332233445555555555555
|
| >1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00014 Score=69.74 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=45.6
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcE--EEEEEeeccch------------------------hHHHHHHHHHHHhhc
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGME--VAVKVFDLQYR------------------------EAFKNFDIECDMMKH 479 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~--vavK~~~~~~~------------------------~~~~~~~~E~~~l~~ 479 (628)
.-|+..+.||+|+||.||+|.. .+|+. ||||+++.... .....+.+|++++++
T Consensus 47 ~~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~ 126 (258)
T 1zth_A 47 YITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLER 126 (258)
T ss_dssp SEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHH
T ss_pred CchhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHH
Confidence 3466778999999999999998 77999 99998753211 112357899999999
Q ss_pred ccCCCc
Q 037488 480 IRHRNL 485 (628)
Q Consensus 480 l~h~ni 485 (628)
++|+++
T Consensus 127 l~~~~i 132 (258)
T 1zth_A 127 AKEAGV 132 (258)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 998864
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0018 Score=54.46 Aligned_cols=54 Identities=26% Similarity=0.305 Sum_probs=28.7
Q ss_pred EEEccCCcCC--cCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcC
Q 037488 235 SLHLGSNQIT--SIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNF 290 (628)
Q Consensus 235 ~L~L~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (628)
.++.+++.++ .+|..+. .+|++|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5566666666 5664432 2455555555555554444455555555555555543
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0019 Score=54.35 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=28.6
Q ss_pred EEEccCCcce-ecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccc
Q 037488 37 ELLLWGNNFS-GTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYL 93 (628)
Q Consensus 37 ~L~ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l 93 (628)
.++.+++.++ ..+|..+ -++|+.|+|++|+|+.+.++.|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 1233221 12456666666666655555555555555555555544
|
| >4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00046 Score=69.48 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=35.5
Q ss_pred hhHHHHHhhcCCCcccccccCCccEEEEEEecCCcEEEEEEee
Q 037488 418 TYLELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFD 460 (628)
Q Consensus 418 ~~~~l~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~ 460 (628)
.+..+.....-|++...||+|+||.||+|...+|+.||||+++
T Consensus 86 AL~~L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r 128 (397)
T 4gyi_A 86 ALHTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHR 128 (397)
T ss_dssp HHHHHHHTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEEC
T ss_pred HHHHHHHCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEe
Confidence 3344445455689999999999999999999889999999875
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0018 Score=58.34 Aligned_cols=62 Identities=19% Similarity=0.200 Sum_probs=35.1
Q ss_pred CCCCCEEeCCCCcCccc----CChhhcCCCCCCEEECcCCc---ccc----cCchhhhcCCCCCEEEccCCcc
Q 037488 301 LKDLQYLFLEYNRLQGS----IPDSIGDLINLKSLDLSNNN---LSG----IIPISLEKLLDLKDINVSFNKL 362 (628)
Q Consensus 301 l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~N~---l~~----~~~~~~~~l~~L~~l~l~~N~l 362 (628)
-+.|++|+|++|.|... +-..+..-+.|+.|+|++|. +.. .+...+..-+.|+.|+++.|.+
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 34566666666666431 22334444567777777543 221 1233456667788888877654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0011 Score=59.67 Aligned_cols=84 Identities=14% Similarity=0.102 Sum_probs=41.5
Q ss_pred CCCCCCEEEccCC-cCCc----cccccccCCCCCCEeecccCcccccCC----ccccCCCCCCEEEccCCcCccc----C
Q 037488 157 NLTNLIAIYLGGN-KLNG----SIPIALGKLQKLQLLNLEYNQLEGSIP----DDLCRLAALFQLDLGSNKLSGF----V 223 (628)
Q Consensus 157 ~l~~L~~L~L~~n-~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~----~ 223 (628)
+-+.|+.|+|++| .|.. .+-.++..-+.|+.|+|++|+|...-- +.+..-+.|+.|+|++|.|... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4456677777664 5542 122334455566666666666653211 1222335566666666665432 1
Q ss_pred CCCccCCCCCcEEEccC
Q 037488 224 PASFGNLTNLRSLHLGS 240 (628)
Q Consensus 224 ~~~~~~l~~L~~L~L~~ 240 (628)
...+..-+.|+.|+|++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 12233334455555554
|
| >3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A* | Back alignment and structure |
|---|
Probab=91.33 E-value=0.29 Score=46.24 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=52.6
Q ss_pred HhhcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhccc-CCCcceeeeeccC
Q 037488 424 QATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIR-HRNLIKIISSCSN 494 (628)
Q Consensus 424 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~ 494 (628)
....+|......+.|+++.||++... ++.+++|+...........+.+|+++++.+. |..+.++++++..
T Consensus 11 ~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~ 81 (263)
T 3tm0_A 11 KLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERH 81 (263)
T ss_dssp HHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEE
T ss_pred HHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 34467888888888999999998755 6889999986532223345889999999884 6677788887754
|
| >3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A | Back alignment and structure |
|---|
Probab=87.42 E-value=0.069 Score=55.48 Aligned_cols=59 Identities=7% Similarity=-0.061 Sum_probs=16.7
Q ss_pred ccccccCCccEEEEEEecC-CcEEEE------EEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeecc
Q 037488 432 NNLIDRGGIGYVYKRRIHY-GMEVAV------KVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCS 493 (628)
Q Consensus 432 ~~~ig~G~~g~V~~~~~~~-~~~vav------K~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 493 (628)
.+.+| ||.||+|.+.. ...||| |..+... .+....|.+|..+++..+|||+++.+++..
T Consensus 147 ~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 147 YEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp TTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred cccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 45565 99999998843 467888 6654322 233456889999999999999999987643
|
| >1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6 | Back alignment and structure |
|---|
Probab=85.63 E-value=0.74 Score=43.17 Aligned_cols=65 Identities=9% Similarity=0.045 Sum_probs=44.1
Q ss_pred CCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCc--ceeeeeccCC
Q 037488 428 GFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNL--IKIISSCSND 495 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni--v~l~~~~~~~ 495 (628)
+|......+.|..+.||++...+|+.+++|..... ....+.+|+++++.+++.++ .++++++..+
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~ 87 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEA 87 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECS
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCC
Confidence 34433333456669999998777888999997543 22457789999999865554 4577766543
|
| >3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX} | Back alignment and structure |
|---|
Probab=83.37 E-value=0.98 Score=43.32 Aligned_cols=54 Identities=11% Similarity=-0.013 Sum_probs=41.8
Q ss_pred CCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhccc
Q 037488 428 GFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIR 481 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~ 481 (628)
.......+|.|..+.||+.+..+|+.|.+|+-..........|.+|.+.|+.+.
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~ 69 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLG 69 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHT
T ss_pred CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHH
Confidence 445567889999999999999999999999865433333345788999998884
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 628 | ||||
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-26 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-25 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 7e-21 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-19 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 9e-14 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 9e-05 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-25 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-20 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 6e-18 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-17 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-13 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-06 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-05 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-20 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-12 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 0.001 | |
| d1uwha_ | 276 | d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) | 8e-18 | |
| d1uwha_ | 276 | d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) | 6e-07 | |
| d1t4ha_ | 270 | d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa | 9e-16 | |
| d1r0pa_ | 311 | d.144.1.7 (A:) Hepatocyte growth factor receptor, | 8e-15 | |
| d1qpca_ | 272 | d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom | 2e-14 | |
| d1sm2a_ | 263 | d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu | 2e-14 | |
| d1fmka3 | 285 | d.144.1.7 (A:249-533) c-src tyrosine kinase {Human | 2e-14 | |
| d1fmka3 | 285 | d.144.1.7 (A:249-533) c-src tyrosine kinase {Human | 3e-08 | |
| d1mqba_ | 283 | d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum | 5e-14 | |
| d1k2pa_ | 258 | d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum | 5e-14 | |
| d1nvra_ | 271 | d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 { | 7e-14 | |
| d1nvra_ | 271 | d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 { | 4e-07 | |
| d1vjya_ | 303 | d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human | 2e-13 | |
| d1vjya_ | 303 | d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human | 2e-07 | |
| d1xbba_ | 277 | d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human | 5e-13 | |
| d1xkka_ | 317 | d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb- | 5e-13 | |
| d1u59a_ | 285 | d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum | 5e-13 | |
| d1u59a_ | 285 | d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum | 3e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 7e-13 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.001 | |
| d1jpaa_ | 299 | d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou | 8e-13 | |
| d2java1 | 269 | d.144.1.7 (A:3-271) Serine/threonine-protein kinas | 1e-12 | |
| d1rjba_ | 325 | d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s | 1e-12 | |
| d1rjba_ | 325 | d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s | 5e-05 | |
| d1lufa_ | 301 | d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n | 2e-12 | |
| d1t46a_ | 311 | d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens | 2e-12 | |
| d1t46a_ | 311 | d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens | 4e-05 | |
| d1byga_ | 262 | d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) | 4e-12 | |
| d1u46a_ | 273 | d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum | 4e-12 | |
| d1u46a_ | 273 | d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum | 8e-07 | |
| d1yhwa1 | 293 | d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [ | 8e-12 | |
| d1yhwa1 | 293 | d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [ | 7e-09 | |
| d1mp8a_ | 273 | d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma | 2e-11 | |
| d1p4oa_ | 308 | d.144.1.7 (A:) Insulin-like growth factor 1 recept | 3e-11 | |
| d2j4za1 | 263 | d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur | 5e-11 | |
| d2j4za1 | 263 | d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur | 2e-06 | |
| d1s9ja_ | 322 | d.144.1.7 (A:) Dual specificity mitogen-activated | 5e-11 | |
| d1s9ja_ | 322 | d.144.1.7 (A:) Dual specificity mitogen-activated | 2e-09 | |
| d1opja_ | 287 | d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou | 7e-11 | |
| d1opja_ | 287 | d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou | 2e-08 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-10 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-08 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-08 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-06 | |
| d1fgka_ | 299 | d.144.1.7 (A:) Fibroblast growth factor receptor 1 | 2e-10 | |
| d1ckia_ | 299 | d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n | 3e-10 | |
| d1fvra_ | 309 | d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [ | 5e-10 | |
| d1fvra_ | 309 | d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [ | 3e-05 | |
| d1jksa_ | 293 | d.144.1.7 (A:) Death-associated protein kinase, Da | 1e-09 | |
| d1jksa_ | 293 | d.144.1.7 (A:) Death-associated protein kinase, Da | 3e-06 | |
| d1koba_ | 352 | d.144.1.7 (A:) Twitchin, kinase domain {California | 2e-09 | |
| d1koba_ | 352 | d.144.1.7 (A:) Twitchin, kinase domain {California | 1e-07 | |
| d1uu3a_ | 288 | d.144.1.7 (A:) 3-phosphoinositide dependent protei | 3e-09 | |
| d1uu3a_ | 288 | d.144.1.7 (A:) 3-phosphoinositide dependent protei | 2e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-09 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-09 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-04 | |
| d1a06a_ | 307 | d.144.1.7 (A:) Calmodulin-dependent protein kinase | 3e-09 | |
| d1a06a_ | 307 | d.144.1.7 (A:) Calmodulin-dependent protein kinase | 6e-07 | |
| d2jfla1 | 288 | d.144.1.7 (A:21-308) STE20-like serine/threonine-p | 5e-09 | |
| d2jfla1 | 288 | d.144.1.7 (A:21-308) STE20-like serine/threonine-p | 2e-08 | |
| d1ywna1 | 299 | d.144.1.7 (A:818-1166) Vascular endothelial growth | 6e-09 | |
| d1o6ya_ | 277 | d.144.1.7 (A:) Mycobacterial protein kinase PknB, | 7e-09 | |
| d1o6ya_ | 277 | d.144.1.7 (A:) Mycobacterial protein kinase PknB, | 3e-07 | |
| d1u5ra_ | 309 | d.144.1.7 (A:) Serine/threonine protein kinase TAO | 1e-08 | |
| d1u5ra_ | 309 | d.144.1.7 (A:) Serine/threonine protein kinase TAO | 1e-08 | |
| d1koaa2 | 350 | d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C | 1e-08 | |
| d1koaa2 | 350 | d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C | 1e-07 | |
| d1tkia_ | 321 | d.144.1.7 (A:) Titin, kinase domain {Human (Homo s | 1e-08 | |
| d1tkia_ | 321 | d.144.1.7 (A:) Titin, kinase domain {Human (Homo s | 8e-06 | |
| d1pmea_ | 345 | d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien | 2e-08 | |
| d1pmea_ | 345 | d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien | 9e-06 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 3e-08 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 2e-06 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 2e-05 | |
| d1xjda_ | 320 | d.144.1.7 (A:) Protein kinase C, theta type {Human | 3e-08 | |
| d1xjda_ | 320 | d.144.1.7 (A:) Protein kinase C, theta type {Human | 2e-04 | |
| d1unla_ | 292 | d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H | 3e-08 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 3e-08 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 3e-07 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.004 | |
| d1gz8a_ | 298 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H | 4e-08 | |
| d1gz8a_ | 298 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H | 5e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-08 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-07 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 5e-08 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 1e-07 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-06 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 4e-05 | |
| d1blxa_ | 305 | d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H | 8e-08 | |
| d2ozaa1 | 335 | d.144.1.7 (A:51-385) MAP kinase activated protein | 8e-08 | |
| d2ozaa1 | 335 | d.144.1.7 (A:51-385) MAP kinase activated protein | 0.004 | |
| d1omwa3 | 364 | d.144.1.7 (A:186-549) G-protein coupled receptor k | 2e-07 | |
| d1ua2a_ | 299 | d.144.1.7 (A:) Cell division protein kinase 7, CDK | 3e-07 | |
| d1ua2a_ | 299 | d.144.1.7 (A:) Cell division protein kinase 7, CDK | 1e-06 | |
| d1csna_ | 293 | d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast | 3e-07 | |
| d1fota_ | 316 | d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni | 5e-07 | |
| d1fota_ | 316 | d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni | 5e-05 | |
| d2gfsa1 | 348 | d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa | 5e-07 | |
| d2gfsa1 | 348 | d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa | 6e-04 | |
| d3blha1 | 318 | d.144.1.7 (A:8-325) Cell division protein kinase 9 | 5e-07 | |
| d1q5ka_ | 350 | d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs | 6e-07 | |
| d1q5ka_ | 350 | d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs | 2e-05 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 6e-07 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 9e-07 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 5e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 6e-07 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 4e-06 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 1e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 8e-07 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 8e-05 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 1e-04 | |
| d1xwsa_ | 273 | d.144.1.7 (A:) Proto-oncogene serine/threonine-pro | 1e-06 | |
| d1xwsa_ | 273 | d.144.1.7 (A:) Proto-oncogene serine/threonine-pro | 2e-04 | |
| d1cm8a_ | 346 | d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s | 2e-06 | |
| d1cm8a_ | 346 | d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s | 4e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 9e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.003 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.003 | |
| d1ob3a_ | 286 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod | 2e-06 | |
| d1ob3a_ | 286 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod | 3e-06 | |
| d1phka_ | 277 | d.144.1.7 (A:) gamma-subunit of glycogen phosphory | 3e-06 | |
| d1o6la_ | 337 | d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap | 3e-06 | |
| d1o6la_ | 337 | d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap | 3e-05 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 9e-06 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 1e-05 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 4e-04 | |
| d3bqca1 | 328 | d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu | 6e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 2e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 3e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.003 | |
| d1rdqe_ | 350 | d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni | 2e-04 | |
| d1vzoa_ | 322 | d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5 | 4e-04 | |
| d1vzoa_ | 322 | d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5 | 0.001 | |
| d1m9la_ | 198 | c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree | 5e-04 | |
| d1q8ya_ | 362 | d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces | 6e-04 | |
| d2b1pa1 | 355 | d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3 | 0.001 |
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 106 bits (265), Expect = 5e-26
Identities = 61/268 (22%), Positives = 104/268 (38%), Gaps = 11/268 (4%)
Query: 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKL 171
NN + I NL + + + IS P + L L +YL N+L
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKN-LHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91
Query: 172 NGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLT 231
LQ+L++ E ++ S+ + L + +L K SG +F +
Sbjct: 92 KELPEKMPKTLQELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLKSSGIENGAFQGMK 150
Query: 232 NLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFS 291
L + + IT+IP L + L+L N T + L L K+ LS N+ S
Sbjct: 151 KLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208
Query: 292 GVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGI------IPIS 345
V ++ L+ L L N+L +P + D ++ + L NNN+S I P
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267
Query: 346 LEKLLDLKDINVSFNKLEGEIPREGSFR 373
K +++ N ++ + +FR
Sbjct: 268 NTKKASYSGVSLFSNPVQYWEIQPSTFR 295
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 103 bits (257), Expect = 5e-25
Identities = 62/304 (20%), Positives = 99/304 (32%), Gaps = 32/304 (10%)
Query: 33 QNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNY 92
+ L L N + N L L L N P F L L RL L+ N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 93 LTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEI-FWMHSCNISGGI 151
L K+ K L+ N + + L+Q + + + SG
Sbjct: 91 LKELPEKM--------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142
Query: 152 PEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQ 211
+ L I + + I G L L+L+ N++ L L L +
Sbjct: 143 NGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 199
Query: 212 LDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLP 271
L L N +S S N +LR LHL +N++ +P L + K I + L +N +
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA--- 256
Query: 272 LEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGS--IPDSIGDLINLK 329
+ N+F P + L N +Q P + +
Sbjct: 257 -------------IGSNDFCP--PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301
Query: 330 SLDL 333
++ L
Sbjct: 302 AVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 91.6 bits (226), Expect = 7e-21
Identities = 48/218 (22%), Positives = 87/218 (39%), Gaps = 5/218 (2%)
Query: 174 SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNL 233
+P L LL+L+ N++ D L L L L +NK+S P +F L L
Sbjct: 24 KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81
Query: 234 RSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGV 293
L+L NQ+ +P + L ++ + N +++++ + SG+
Sbjct: 82 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141
Query: 294 IPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLK 353
+K L Y+ + + +IP + +L L L N ++ + SL+ L +L
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLA 198
Query: 354 DINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPN 391
+ +SFN + + L E N L +P
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 87.4 bits (215), Expect = 2e-19
Identities = 52/246 (21%), Positives = 89/246 (36%), Gaps = 5/246 (2%)
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210
+P+++ + + L NK+ L+ L L L N++ P L L
Sbjct: 25 VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPL 270
+L L N+L L LR ++ LN ++ L + +G
Sbjct: 83 RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142
Query: 271 PLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKS 330
+K L I ++ N + I G L L L+ N++ S+ L NL
Sbjct: 143 NGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 199
Query: 331 LDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMP 390
L LS N++S + SL L++++++ NKL + N +
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 259
Query: 391 NLQVPP 396
N PP
Sbjct: 260 NDFCPP 265
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.1 bits (170), Expect = 9e-14
Identities = 54/280 (19%), Positives = 89/280 (31%), Gaps = 53/280 (18%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQNVQ-----------LQNLEELLLWGNNFSGTIPS 51
NK+ + N+ L++L L N + L LE L L N
Sbjct: 38 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 97
Query: 52 FIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKY 111
+L E N + F L + + L N L SS + +
Sbjct: 98 MPKTLQELRVHE---NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK--- 151
Query: 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKL 171
L Y ++ ++ I +L ++L GNK+
Sbjct: 152 LSYIRIADTNITTIPQ----------------------------GLPPSLTELHLDGNKI 183
Query: 172 NGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLT 231
+L L L L L +N + L L +L L +NKL VP +
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 242
Query: 232 NLRSLHLGSNQITSIPST-------LLNLKDILYLNLSSN 264
++ ++L +N I++I S ++L SN
Sbjct: 243 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.0 bits (136), Expect = 2e-09
Identities = 23/142 (16%), Positives = 43/142 (30%)
Query: 280 LIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLS 339
+DL N + + LK+L L L N++ P + L+ L+ L LS N L
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 340 GIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPCRT 399
+ + L +L+ K+ + + + + +
Sbjct: 93 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152
Query: 400 RIHHTSRKNGLLIGIRRLTYLE 421
+ N I L
Sbjct: 153 SYIRIADTNITTIPQGLPPSLT 174
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.3 bits (98), Expect = 9e-05
Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 35/195 (17%)
Query: 6 NKLVGVVPTTIFNVSTLNSLYLQNVQL--------QNLEELLLWGNNFSGTIPSFIFNAS 57
K G+ + L+ + + + + +L EL L GN + + + +
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLN 195
Query: 58 KLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSF 117
L++L L NS + N +L L LN+N L L++ KY++
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV------KVPGGLADHKYIQVVYL 249
Query: 118 SNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGS--I 175
NN++ I P + + + L N +
Sbjct: 250 HNNNISAIGSNDFCP-------------------PGYNTKKASYSGVSLFSNPVQYWEIQ 290
Query: 176 PIALGKLQKLQLLNL 190
P + + L
Sbjct: 291 PSTFRCVYVRAAVQL 305
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 106 bits (265), Expect = 2e-25
Identities = 79/340 (23%), Positives = 130/340 (38%), Gaps = 30/340 (8%)
Query: 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND 90
L NL ++ N + P + N +KL + + N P L N
Sbjct: 64 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 121
Query: 91 NYLTSSTPK----------LNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIF 140
N +S +S L + + + NL+ +
Sbjct: 122 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181
Query: 141 WMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIP 200
+ ++ LTNL ++ N+++ P+ + L L+L NQL+
Sbjct: 182 ISSNKVS---DISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--I 234
Query: 201 DDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLN 260
L L L LDL +N++S P LT L L LG+NQI++I L L + L
Sbjct: 235 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLE 291
Query: 261 LSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPD 320
L+ N P I NLK L + L NN S + P+ L LQ LF N++
Sbjct: 292 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFANNKVSD--VS 345
Query: 321 SIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFN 360
S+ +L N+ L +N +S + P++ L + + ++
Sbjct: 346 SLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQ 383
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.6 bits (223), Expect = 1e-20
Identities = 55/261 (21%), Positives = 93/261 (35%), Gaps = 10/261 (3%)
Query: 81 RNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIF 140
R+ L+ N ++ +S C+ L +N L I A L+ ++
Sbjct: 32 AASQRIFLHGNRISHVPA-----ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86
Query: 141 WMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIP 200
+ + P L L ++L L P L LQ L L+ N L+
Sbjct: 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146
Query: 201 DDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSI-PSTLLNLKDILYL 259
D L L L L N++S +F L +L L L N++ + P +L ++ L
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206
Query: 260 NLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIP 319
L +N + + L+ L + L+ N + LQ + + S+P
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP 265
Query: 320 DSIGDLINLKSLDLSNNNLSG 340
L L+ N+L G
Sbjct: 266 QR---LAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.2 bits (201), Expect = 6e-18
Identities = 51/259 (19%), Positives = 82/259 (31%), Gaps = 8/259 (3%)
Query: 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYL 93
+ + L GN S + L+ L L N F L L +L L+DN
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 94 TSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPE 153
S F L L + +++ ++ + +
Sbjct: 93 LRSVDPATF----HGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 154 EISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLD 213
+L NL ++L GN+++ A L L L L N++ P L L L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 214 LGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLE 273
L +N LS + L L+ L L N + SS+ LP
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267
Query: 274 IGNLKVLIKIDLSMNNFSG 292
+ + L+ N+ G
Sbjct: 268 LAGRDLK---RLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.9 bits (195), Expect = 4e-17
Identities = 58/259 (22%), Positives = 92/259 (35%), Gaps = 30/259 (11%)
Query: 132 NLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSI---------------- 175
+ + + ++H IS NL ++L N L
Sbjct: 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88
Query: 176 ---------PIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPAS 226
P L +L L+L+ L+ P LAAL L L N L +
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 227 FGNLTNLRSLHLGSNQITSIP-STLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDL 285
F +L NL L L N+I+S+P L + L L N P +L L+ + L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 286 SMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPIS 345
NN S + + L+ LQYL L N + L+ S++ + +P
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLP-- 265
Query: 346 LEKLLDLKDINVSFNKLEG 364
++L ++ N L+G
Sbjct: 266 -QRLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.9 bits (164), Expect = 4e-13
Identities = 61/242 (25%), Positives = 89/242 (36%), Gaps = 4/242 (1%)
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210
+P I I+L GN+++ + + L +L L N L LA L
Sbjct: 26 VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83
Query: 211 QLDLGSNKLSGFV-PASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYL-NLSSNFFTG 268
QLDL N V PA+F L L +LHL + + L L L N
Sbjct: 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143
Query: 269 PLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINL 328
+L L + L N S V L L L L NR+ P + DL L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203
Query: 329 KSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCG 388
+L L NNLS + +L L L+ + ++ N + + +E+ C
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS 263
Query: 389 MP 390
+P
Sbjct: 264 LP 265
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 5e-06
Identities = 27/175 (15%), Positives = 51/175 (29%), Gaps = 3/175 (1%)
Query: 235 SLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVI 294
+ + ++P + + L N + + L + L N + +
Sbjct: 15 TTSCPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 295 PITIGYLKDLQYLFLEYNRLQGSI-PDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLK 353
L L+ L L N S+ P + L L +L L L + P L L+
Sbjct: 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132
Query: 354 DINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPCRTRIHHTSRKN 408
+ + N L+ L F + +P + +N
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 3e-05
Identities = 36/197 (18%), Positives = 56/197 (28%), Gaps = 47/197 (23%)
Query: 1 MAFSFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLS 60
+ N L + T ++ NL L L GN S L
Sbjct: 134 LYLQDNALQALPDDTFRDL-------------GNLTHLFLHGNRISSVPERAFRGLHSLD 180
Query: 61 RLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNN 120
RL L N P+ F +L L L L N L++ + + + L+Y ++N
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL-----APLRALQYLRLNDN 235
Query: 121 SLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALG 180
C L +++ S+P
Sbjct: 236 PWVC-------------------DCRA-------RPLWAWLQKFRGSSSEVPCSLP---Q 266
Query: 181 KLQKLQLLNLEYNQLEG 197
+L L L N L+G
Sbjct: 267 RLAGRDLKRLAANDLQG 283
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 91.0 bits (224), Expect = 1e-20
Identities = 68/296 (22%), Positives = 117/296 (39%), Gaps = 29/296 (9%)
Query: 104 SSLSNCKYLKYFSFSNNSLDGI--LPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNL 161
+ + + S +L +P ++ NL ++ N+ G IP I+ LT L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 162 IAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSG 221
+Y+ ++G+IP L +++ L L+ YN L G++P + L L + N++SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 222 FVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLI 281
+P S+G+ + L + S + L S +
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 282 KIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGI 341
+ N +G K+L L L NR+ G++P + L L SL++S NNL
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC-- 281
Query: 342 IPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPC 397
GEIP+ G+ + F ++ N+ LCG P +P C
Sbjct: 282 ----------------------GEIPQGGNLQRFDVSAYANNKCLCGSP---LPAC 312
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 66.7 bits (161), Expect = 1e-12
Identities = 52/277 (18%), Positives = 93/277 (33%), Gaps = 21/277 (7%)
Query: 10 GVVPTTIFNVSTLNSLYLQNVQLQNLEEL--------------LLWGNNFSGTIPSFIFN 55
GV+ T +N+L L + L + + NN G IP I
Sbjct: 40 GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99
Query: 56 ASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYF 115
++L L + + G IP+ ++ L L + N L+ + P S+S+ L
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-----PSISSLPNLVGI 154
Query: 116 SFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSI 175
+F N + G +P + G+ S+ + ++ + +A +
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT--GKIPPTFANLNLAFVDLSRNMLEGD 212
Query: 176 PIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRS 235
L K + L LDL +N++ G +P L L S
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 236 LHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPL 272
L++ N + NL+ ++N PL
Sbjct: 273 LNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 39.0 bits (89), Expect = 0.001
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 14/66 (21%)
Query: 4 SFNKLVGVVPTTIFNVSTLNSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLE 63
N++ G +P + L+ L L + NN G IP N +
Sbjct: 252 RNNRIYGTLPQGLTQ-------------LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA 297
Query: 64 LQMNSF 69
N
Sbjct: 298 YANNKC 303
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.9 bits (202), Expect = 8e-18
Identities = 39/157 (24%), Positives = 58/157 (36%), Gaps = 20/157 (12%)
Query: 477 MKHIRHRNL-IKIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEY---G 531
K I HR+L I + K DFG+A + S Q +I +MAPE
Sbjct: 122 AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQ 181
Query: 532 REGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591
+ S DVY+FGI+L E T + P I + + + L + KV
Sbjct: 182 DKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRS----- 236
Query: 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
C + L +C + +ER +I
Sbjct: 237 ----------NCPKAMKRLMAECLKKKRDERPLFPQI 263
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (117), Expect = 6e-07
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 433 NLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIIS 490
I G G VYK + + +VAVK+ ++ + + F E +++ RH N++ +
Sbjct: 14 QRIGSGSFGTVYKGK--WHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMG 71
Query: 491 SCSNDDF 497
+
Sbjct: 72 YSTAPQL 78
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.4 bits (185), Expect = 9e-16
Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 30/198 (15%)
Query: 434 LIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLI--KIISS 491
L+ G + KR ++V R+ K I HR+L I +
Sbjct: 93 LMTSGTLKTYLKRFKVMKIKVLRSWC----RQILKGLQFLHTRTPPIIHRDLKCDNIFIT 148
Query: 492 CSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLI 550
K D G+A L + + + T +MAPE E + + DVY+FG+ ++
Sbjct: 149 GPTGSVKIGDLGLAT-LKRASFA---KAVIGTPEFMAPEM-YEEKYDESVDVYAFGMCML 203
Query: 551 ETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNL 610
E T + P E + + + + P S KV + +
Sbjct: 204 EMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVK------------------EI 245
Query: 611 AMKCTVESPEERVNAKEI 628
C ++ +ER + K++
Sbjct: 246 IEGCIRQNKDERYSIKDL 263
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.7 bits (180), Expect = 8e-15
Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 23/161 (14%)
Query: 472 IECDMMKHIRHRNL-IKIISSCSNDDFK-ADFGMAKPLLKED--QSLIQTQTLATIGYMA 527
++ K HR+L + K ADFG+A+ + ++ +T + +MA
Sbjct: 143 MKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 202
Query: 528 PEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587
E + + +T DV+SFG++L E TR P ++ LL
Sbjct: 203 LESLQTQKFTTKSDVWSFGVLLWELMTRGAP----PYPDVNTFDITVYLL---------- 248
Query: 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ + + C ++ + +KC E R + E+
Sbjct: 249 -----QGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSEL 284
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.0 bits (176), Expect = 2e-14
Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 22/153 (14%)
Query: 478 KHIRHRNL--IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535
++ HR+L I+ S + ADFG+A+ L+++++ + I + APE G
Sbjct: 128 RNYIHRDLRAANILVSDTLSCKIADFGLAR-LIEDNEYTAREGAKFPIKWTAPEAINYGT 186
Query: 536 VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595
+ DV+SFGI+L E T + + +++
Sbjct: 187 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRM----------------- 229
Query: 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
V C ++ L C E PE+R +
Sbjct: 230 --VRPDNCPEELYQLMRLCWKERPEDRPTFDYL 260
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.3 bits (174), Expect = 2e-14
Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 22/159 (13%)
Query: 472 IECDMMKHIRHRNLI-KIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPE 529
+ + HR+L + N K +DFGM + + +DQ T T + + +PE
Sbjct: 114 MAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTR-FVLDDQYTSSTGTKFPVKWASPE 172
Query: 530 YGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589
R S+ DV+SFG+++ E F+ K E S ++ ++ L
Sbjct: 173 VFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGF------RLYKPRL 226
Query: 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
S V+ + C E PE+R +
Sbjct: 227 ASTH-------------VYQIMNHCWKERPEDRPAFSRL 252
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.7 bits (175), Expect = 2e-14
Identities = 40/212 (18%), Positives = 73/212 (34%), Gaps = 36/212 (16%)
Query: 419 YLELFQATNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMK 478
Y+ + G + L G + + ++A + ++
Sbjct: 87 YIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE--------------RM 132
Query: 479 HIRHRNL-IKIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRV 536
+ HR+L I N K ADFG+A+ L+++++ + I + APE GR
Sbjct: 133 NYVHRDLRAANILVGENLVCKVADFGLAR-LIEDNEYTARQGAKFPIKWTAPEAALYGRF 191
Query: 537 STNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596
+ DV+SFGI+L E T+ + L
Sbjct: 192 TIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRM------------------ 233
Query: 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+C + +L +C + PEER + +
Sbjct: 234 -PCPPECPESLHDLMCQCWRKEPEERPTFEYL 264
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (127), Expect = 3e-08
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 429 FSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKI 488
+ +G G V+ + VA+K + F E +MK +RH L+++
Sbjct: 19 LRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP-EAFLQEAQVMKKLRHEKLVQL 77
Query: 489 ISSCSNDDF 497
+ S +
Sbjct: 78 YAVVSEEPI 86
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (172), Expect = 5e-14
Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 22/159 (13%)
Query: 473 ECDMMKHIRHRNL-IKIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLA-TIGYMAPE 529
+ + HR+L + I SN K +DFG+++ L + ++ T I + APE
Sbjct: 124 KYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPE 183
Query: 530 YGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589
+ ++ DV+SFGI++ E T + S +K + + M A
Sbjct: 184 AISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSA-- 241
Query: 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
++ L M+C + R +I
Sbjct: 242 -----------------IYQLMMQCWQQERARRPKFADI 263
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.1 bits (171), Expect = 5e-14
Identities = 30/162 (18%), Positives = 65/162 (40%), Gaps = 27/162 (16%)
Query: 474 CDMMKHIRHRNLIKIISSCSN----DDFK---ADFGMAKPLLKEDQSLIQTQTLATIGYM 526
C+ M+++ + + + N D +DFG+++ + +D+ + + +
Sbjct: 110 CEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSR-YVLDDEYTSSVGSKFPVRWS 168
Query: 527 APEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVD 586
PE + S+ D+++FG+++ E ++ K E F+ T +H L
Sbjct: 169 PPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRL------YR 222
Query: 587 AHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
HL S++ V+ + C E +ER K +
Sbjct: 223 PHLASEK-------------VYTIMYSCWHEKADERPTFKIL 251
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.0 bits (171), Expect = 7e-14
Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 21/154 (13%)
Query: 478 KHIRHRNLI-KIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535
I HR++ + + D+ K +DFG+A ++ + + T+ Y+APE +
Sbjct: 122 IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRRE 181
Query: 536 VSTNG-DVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594
DV+S GI+L + P D+ W ++ K +D+ L
Sbjct: 182 FHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPL---- 237
Query: 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
L K VE+P R+ +I
Sbjct: 238 --------------ALLHKILVENPSARITIPDI 257
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (118), Expect = 4e-07
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 429 FSEN----NLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYR-EAFKNFDIECDMMKHIRH 482
F E+ + G G V VAVK+ D++ + +N E + K + H
Sbjct: 3 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNH 62
Query: 483 RNLIKIISSCSNDDF 497
N++K +
Sbjct: 63 ENVVKFYGHRREGNI 77
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.7 bits (167), Expect = 2e-13
Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 13/169 (7%)
Query: 472 IECDMMKHIRHRNLIKIISSCSNDDFK---ADFGMAKPLLKEDQSL--IQTQTLATIGYM 526
+ I HR+ +K + + AD G+A ++ + T YM
Sbjct: 121 VGTQGKPAIAHRD-LKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYM 179
Query: 527 APEY------GREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS 580
APE + D+Y+ G++ E R ++ V +
Sbjct: 180 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE 239
Query: 581 VM-KVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
M KVV L + + + + + +C + R+ A I
Sbjct: 240 EMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRI 288
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (120), Expect = 2e-07
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 435 IDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSN 494
I +G G V++ + G EVAVK+F + ++ + E +RH N++ I++ +
Sbjct: 11 IGKGRFGEVWRGK-WRGEEVAVKIFSSREERSWF-REAEIYQTVMLRHENILGFIAADNK 68
Query: 495 DD 496
D+
Sbjct: 69 DN 70
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.4 bits (164), Expect = 5e-13
Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 22/155 (14%)
Query: 477 MKHIRHRNLI--KIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLA-TIGYMAPEYGRE 533
+ HR+L ++ + +DFG++K L ++ + + APE
Sbjct: 125 ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINY 184
Query: 534 GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593
+ S+ DV+SFG+++ E F+ + P MK + + ++
Sbjct: 185 YKFSSKSDVWSFGVLMWEAFSYGQK-------------------PYRGMKGSEVTAMLEK 225
Query: 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ C +++L C E R +
Sbjct: 226 GERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAV 260
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.9 bits (165), Expect = 5e-13
Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 21/159 (13%)
Query: 472 IECDMMKHIRHRNLI-KIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPE 529
+ + + HR+L + + + K DFG+AK L E++ I +MA E
Sbjct: 124 MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALE 183
Query: 530 YGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589
+ DV+S+G+ + E T P + +
Sbjct: 184 SILHRIYTHQSDVWSYGVTVWELMTFGSK-------------------PYDGIPASEISS 224
Query: 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ ++ + C V+ + +KC + + R +E+
Sbjct: 225 ILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFREL 263
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.4 bits (164), Expect = 5e-13
Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 22/155 (14%)
Query: 477 MKHIRHRNLI--KIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLA-TIGYMAPEYGRE 533
K+ HR+L ++ + +DFG++K L +D + + APE
Sbjct: 127 EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINF 186
Query: 534 GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593
+ S+ DV+S+G+ + E + + P MK + ++
Sbjct: 187 RKFSSRSDVWSYGVTMWEALSYGQK-------------------PYKKMKGPEVMAFIEQ 227
Query: 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
K +C ++ L C + E+R + +
Sbjct: 228 GKRMECPPECPPELYALMSDCWIYKWEDRPDFLTV 262
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (119), Expect = 3e-07
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 421 ELFQATNGFS-ENNLIDRGGIGYVYK---RRIHYGMEVAVKVFDLQYREAF-KNFDIECD 475
+LF + + + G G V + R ++VA+KV +A + E
Sbjct: 2 KLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQ 61
Query: 476 MMKHIRHRNLIKIISSCSNDDF 497
+M + + ++++I C +
Sbjct: 62 IMHQLDNPYIVRLIGVCQAEAL 83
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.0 bits (162), Expect = 7e-13
Identities = 50/209 (23%), Positives = 77/209 (36%), Gaps = 6/209 (2%)
Query: 154 EISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLD 213
E+S + + + + L ++P L K +L+L N L L L QL+
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 214 LGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLE 273
L + G L L +L L NQ+ S+P L + L++S N T
Sbjct: 62 LDRAE--LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 274 IGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDL 333
+ L L ++ L N + P + L+ L L N L + L NL +L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
Query: 334 SNNNLSGIIPISLEKLLDLKDINVSFNKL 362
N+L IP L + N
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.7 bits (143), Expect = 2e-10
Identities = 43/211 (20%), Positives = 67/211 (31%), Gaps = 13/211 (6%)
Query: 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND 90
++ + E+ N + +P + + L L N Y F T L +L L+
Sbjct: 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD- 63
Query: 91 NYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGG 150
+ L L S +G ++ + + ++
Sbjct: 64 RAELTKLQVDGTLPVLGTLDLSHNQLQSLPL--------LGQTLPALTVLDVSFNRLTSL 115
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210
+ L L +YL GN+L P L KL+ L+L N L L L L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSN 241
L L N L +P F L L N
Sbjct: 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 3e-06
Identities = 39/211 (18%), Positives = 65/211 (30%), Gaps = 7/211 (3%)
Query: 105 SLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAI 164
+S + +L + P +L + I + + + T L +
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPP----DLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 165 YLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVP 224
L +L G L L L+L +NQL+ A + S +
Sbjct: 61 NLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 225 ASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKID 284
A G G+ T P L + L+L++N T + L+ L +
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 285 LSMNNFSGVIPITIGYLKDLQYLFLEYNRLQ 315
L N+ IP L + FL N
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.001
Identities = 33/179 (18%), Positives = 50/179 (27%), Gaps = 17/179 (9%)
Query: 3 FSFNKLVGVVPTTIFNVSTLNSLYLQNVQ---------LQNLEELLLWGNNFSGTIPSFI 53
S N L T+ + L L L + L L L L N
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ 97
Query: 54 FNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLK 113
+ ++ N L L L L N L + P L L+
Sbjct: 98 TLPALTVL-DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT-----PTPKLE 151
Query: 114 YFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLN 172
S +NN+L + + L + + + IP+ L +L GN
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.1 bits (163), Expect = 8e-13
Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 24/162 (14%)
Query: 472 IECDMMKHIRHRNLI-KIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTL---ATIGYM 526
++ + HR+L + I SN K +DFG+++ L + T L I +
Sbjct: 141 MKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWT 200
Query: 527 APEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVD 586
APE + + ++ DV+S+GI++ E + + P M D
Sbjct: 201 APEAIQYRKFTSASDVWSYGIVMWEVMSYGER-------------------PYWDMTNQD 241
Query: 587 AHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
++D C S + L + C + R +I
Sbjct: 242 VINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQI 283
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.6 bits (162), Expect = 1e-12
Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 25/186 (13%)
Query: 445 KRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNL-IKIISSCSNDDFK-ADFG 502
K R + E ++V Q A K D + HR+L + + K DFG
Sbjct: 101 KERQYLDEEFVLRVM-TQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFG 159
Query: 503 MAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEI 562
+A+ +L D S + T YM+PE + D++S G +L E P
Sbjct: 160 LAR-ILNHDTSFAKAFV-GTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF 217
Query: 563 FSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEER 622
E+ K I + S E + + R
Sbjct: 218 SQKELAGKIREGKFRRIP-------YRYSDELNEII-------------TRMLNLKDYHR 257
Query: 623 VNAKEI 628
+ +EI
Sbjct: 258 PSVEEI 263
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.7 bits (162), Expect = 1e-12
Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 20/153 (13%)
Query: 478 KHIRHRNL--IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535
K HR+L ++ + DFG+A+ ++ + +++ + +MAPE EG
Sbjct: 183 KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGI 242
Query: 536 VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595
+ DV+S+GI+L E F+ + + Q
Sbjct: 243 YTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLI------------------QNGF 284
Query: 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
++ + C +R + +
Sbjct: 285 KMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNL 317
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 5e-05
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 434 LIDRGGIGYVYK------RRIHYGMEVAVKVFDLQYREAF-KNFDIECDMMKHI-RHRNL 485
++ G G V + ++VAVK+ + + + E MM + H N+
Sbjct: 44 VLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENI 103
Query: 486 IKIISSCSNDD 496
+ ++ +C+
Sbjct: 104 VNLLGACTLSG 114
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.4 bits (161), Expect = 2e-12
Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 26/162 (16%)
Query: 474 CDMMKHIRHRNLIKIISSCSN----DDFK---ADFGMAKPLLKEDQSLIQTQTLATIGYM 526
M ++ R + + N ++ ADFG+++ + D I +M
Sbjct: 150 AAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWM 209
Query: 527 APEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVD 586
PE R +T DV+++G++L E F+ + E + V D
Sbjct: 210 PPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVI------------YYVRD 257
Query: 587 AHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
++L+ + C ++NL C + P +R + I
Sbjct: 258 GNILACPEN-------CPLELYNLMRLCWSKLPADRPSFCSI 292
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (161), Expect = 2e-12
Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 20/153 (13%)
Query: 478 KHIRHRNL-IKIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535
K+ HR+L + I K DFG+A+ + + +++ + +MAPE
Sbjct: 164 KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCV 223
Query: 536 VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595
+ DV+S+GI L E F+ + + +E
Sbjct: 224 YTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMI------------------KEGF 265
Query: 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ + ++++ C P +R K+I
Sbjct: 266 RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQI 298
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 4e-05
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 429 FSENNLIDRGGIGYVYKRRIHY------GMEVAVKVFDLQYREAFKN-FDIECDMMKHI- 480
S + G G V + + M VAVK+ + E ++ ++
Sbjct: 25 LSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLG 84
Query: 481 RHRNLIKIISSCSNDD 496
H N++ ++ +C+
Sbjct: 85 NHMNIVNLLGACTIGG 100
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.6 bits (157), Expect = 4e-12
Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 26/153 (16%)
Query: 478 KHIRHRNLI--KIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535
+ HR+L ++ S N +DFG+ K + S Q + + APE RE +
Sbjct: 122 NNFVHRDLAARNVLVSEDNVAKVSDFGLTK-----EASSTQDTGKLPVKWTAPEALREKK 176
Query: 536 VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595
ST DV+SFGI+L E ++ + P + + D ++
Sbjct: 177 FSTKSDVWSFGILLWEIYSFGRV-------------------PYPRIPLKDVVPRVEKGY 217
Query: 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
C V+ + C R + ++
Sbjct: 218 KMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQL 250
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.8 bits (157), Expect = 4e-12
Identities = 32/188 (17%), Positives = 67/188 (35%), Gaps = 23/188 (12%)
Query: 442 YVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFKADF 501
+ K + H+ + + +Q E + + + + + RN ++ + + DF
Sbjct: 100 RLRKHQGHFLLGTLSRYA-VQVAEGMGYLESKRFIHRDLAARN---LLLATRDLVKIGDF 155
Query: 502 GMAKPLLK-EDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTD 560
G+ + L + +D ++Q + APE + S D + FG+ L E FT +
Sbjct: 156 GLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPW 215
Query: 561 EIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPE 620
+G L E + C ++N+ ++C PE
Sbjct: 216 IGLNGSQILHKIDK------------------EGERLPRPEDCPQDIYNVMVQCWAHKPE 257
Query: 621 ERVNAKEI 628
+R +
Sbjct: 258 DRPTFVAL 265
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (115), Expect = 8e-07
Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 19/95 (20%)
Query: 411 LIGIRRLTYLELFQATNGFSENNLIDRGGIGYVYKRRIH----YGMEVAVKVFDLQY--- 463
LIG + L LE + G G V + + VAVK
Sbjct: 4 LIGEKDLRLLEK------------LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQ 51
Query: 464 REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK 498
EA +F E + M + HRNLI++ K
Sbjct: 52 PEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMK 86
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.9 bits (155), Expect = 8e-12
Identities = 29/153 (18%), Positives = 48/153 (31%), Gaps = 22/153 (14%)
Query: 478 KHIRHRNLI-KIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535
+ HR++ I + K DFG + E + + T +MAPE
Sbjct: 135 NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKR--STMVGTPYWMAPEVVTRKA 192
Query: 536 VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595
D++S GIM IE + P N + + + A
Sbjct: 193 YGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFR----- 247
Query: 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ +C E+R +AKE+
Sbjct: 248 -------------DFLNRCLDMDVEKRGSAKEL 267
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (133), Expect = 7e-09
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 433 NLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISS 491
I +G G VY + G EVA++ +LQ + + E +M+ ++ N++ + S
Sbjct: 26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 85
Query: 492 CSNDD 496
D
Sbjct: 86 YLVGD 90
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.5 bits (151), Expect = 2e-11
Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 22/159 (13%)
Query: 472 IECDMMKHIRHRNLI-KIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPE 529
+ K HR++ + + SND K DFG+++ +++ ++ I +MAPE
Sbjct: 121 LAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSR-YMEDSTYYKASKGKLPIKWMAPE 179
Query: 530 YGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589
R ++ DV+ FG+ + E + + N
Sbjct: 180 SINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIEN--------------- 224
Query: 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ + C +++L KC P R E+
Sbjct: 225 ----GERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL 259
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.6 bits (151), Expect = 3e-11
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 23/160 (14%)
Query: 472 IECDMMKHIRHRNLIKIISSCSNDDFK---ADFGMAKPLLKEDQSLIQTQTLATIGYMAP 528
+ HR+L + +DF DFGM + + + D + L + +M+P
Sbjct: 146 MAYLNANKFVHRDL-AARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSP 204
Query: 529 EYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588
E ++G +T DV+SFG++L E T + + S E L+ V++
Sbjct: 205 ESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLR------------FVMEGG 252
Query: 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
LL + D C +F L C +P+ R + EI
Sbjct: 253 LLDKPDN-------CPDMLFELMRMCWQYNPKMRPSFLEI 285
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.5 bits (149), Expect = 5e-11
Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 27/153 (17%)
Query: 478 KHIRHRNL-IKIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535
K + HR++ + + S + K ADFG + ++ + T+ Y+ PE
Sbjct: 125 KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCG----TLDYLPPEMIEGRM 180
Query: 536 VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595
D++S G++ E K P F + + IS ++ +++ +
Sbjct: 181 HDEKVDLWSLGVLCYEFLVGKPP----FEANTYQETYKR----ISRVEFTFPDFVTEGAR 232
Query: 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ + +P +R +E+
Sbjct: 233 DLI-------------SRLLKHNPSQRPMLREV 252
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (112), Expect = 2e-06
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 433 NLIDRGGIGYVYK-RRIHYGMEVAVKVFD---LQYREAFKNFDIECDMMKHIRHRNLIKI 488
+ +G G VY R +A+KV L+ E ++ H+RH N++++
Sbjct: 12 RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRL 71
Query: 489 ISSCSNDDF 497
+
Sbjct: 72 YGYFHDATR 80
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.0 bits (150), Expect = 5e-11
Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 29/177 (16%)
Query: 477 MKHIRHRNL-IKIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREG 534
I HR++ I S + K DFG++ L+ + + T YM+PE +
Sbjct: 123 KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MANSFVGTRSYMSPERLQGT 178
Query: 535 RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594
S D++S G+ L+E + P + E+ L +
Sbjct: 179 HYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLS 238
Query: 595 KHFVIKGQCVSF-----------------------VFNLAMKCTVESPEERVNAKEI 628
+ + ++ + KC +++P ER + K++
Sbjct: 239 SYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQL 295
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.4 bits (138), Expect = 2e-09
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 420 LELFQATNGFSENNLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKN-FDIECDMM 477
+EL + F + + + G G V+K G+ +A K+ L+ + A +N E ++
Sbjct: 1 MEL--KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL 58
Query: 478 KHIRHRNLIKIISSCSNDD 496
++ + +D
Sbjct: 59 HECNSPYIVGFYGAFYSDG 77
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.3 bits (148), Expect = 7e-11
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 22/153 (14%)
Query: 478 KHIRHRNL-IKIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535
K+ HR+L + N K ADFG+++ L+ D I + APE +
Sbjct: 134 KNFIHRDLAARNCLVGENHLVKVADFGLSR-LMTGDTYTAHAGAKFPIKWTAPESLAYNK 192
Query: 536 VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595
S DV++FG++L E T + V ++++ + +
Sbjct: 193 FSIKSDVWAFGVLLWEIATYGMS-------------PYPGIDLSQVYELLEKDYRMERPE 239
Query: 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
C V+ L C +P +R + EI
Sbjct: 240 G------CPEKVYELMRACWQWNPSDRPSFAEI 266
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 54.0 bits (129), Expect = 2e-08
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 429 FSENNLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIK 487
+ + + G G VY+ Y + VAVK E + F E +MK I+H NL++
Sbjct: 19 ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQ 77
Query: 488 IISSCSNDD 496
++ C+ +
Sbjct: 78 LLGVCTREP 86
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.4 bits (138), Expect = 1e-10
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 5/109 (4%)
Query: 234 RSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGV 293
R LHL +T + L L + +L+LS N P + L+ L + S N V
Sbjct: 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58
Query: 294 IPITIGYLKDLQYLFLEYNRLQG-SIPDSIGDLINLKSLDLSNNNLSGI 341
+ LQ L L NRLQ + + L L+L N+L
Sbjct: 59 DGVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.6 bits (123), Expect = 1e-08
Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 6/118 (5%)
Query: 212 LDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLP 271
L L L+ V L + L L N++ ++P L L+ + L S N
Sbjct: 3 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60
Query: 272 LEIGNLKVLIKIDLSMNNFSGVIPI-TIGYLKDLQYLFLEYNRLQGSIPDSIGDLINL 328
+ ++ L N I + L L L+ N L L +
Sbjct: 61 VANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.9 bits (121), Expect = 2e-08
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210
+ + L + + L N+L P AL L+ L++L N D + L L
Sbjct: 12 VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--LENVDGVANLPRLQ 68
Query: 211 QLDLGSNKLSGF-VPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDIL 257
+L L +N+L + L L+L N + L ++L
Sbjct: 69 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.7 bits (105), Expect = 3e-06
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 6/120 (5%)
Query: 258 YLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGS 317
L+L+ T L L ++ +DLS N + P + L+ L+ L + +
Sbjct: 2 VLHLAHKDLTVLCHL--EQLLLVTHLDLSHNRLRALPP-ALAALRCLEVL--QASDNALE 56
Query: 318 IPDSIGDLINLKSLDLSNNNLSGIIPI-SLEKLLDLKDINVSFNKLEGEIPREGSFRNFL 376
D + +L L+ L L NN L I L L +N+ N L E + L
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (144), Expect = 2e-10
Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 21/159 (13%)
Query: 472 IECDMMKHIRHRNL-IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLA-TIGYMAPE 529
+E K HR+L + + ++ K + +T + +MAPE
Sbjct: 148 MEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPE 207
Query: 530 YGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589
+ + DV+SFG++L E FT P + V +
Sbjct: 208 ALFDRIYTHQSDVWSFGVLLWEIFTLGGS-------------------PYPGVPVEELFK 248
Query: 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
L +E C + ++ + C P +R K++
Sbjct: 249 LLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQL 287
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.5 bits (143), Expect = 3e-10
Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 18/158 (11%)
Query: 476 MMKHIRHRNLIKIISSCSNDDFKADFGMAKPL-----LKEDQSLIQTQTLATIGYMAPEY 530
+ + ++ N + + N + DFG+AK + T Y +
Sbjct: 125 IHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINT 184
Query: 531 GREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590
S D+ S G +L+ P + + K+ +S V
Sbjct: 185 HLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGY 244
Query: 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
E ++ C +++ + +
Sbjct: 245 PSEFATYL-------------NFCRSLRFDDKPDYSYL 269
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.0 bits (142), Expect = 5e-10
Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 24/159 (15%)
Query: 472 IECDMMKHIRHRNLI-KIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPE 529
++ K HR+L + I N K ADFG+++ ++ + +T + +MA E
Sbjct: 140 MDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR---GQEVYVKKTMGRLPVRWMAIE 196
Query: 530 YGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589
+TN DV+S+G++L E + P M + +
Sbjct: 197 SLNYSVYTTNSDVWSYGVLLWEIVSLGGT-------------------PYCGMTCAELYE 237
Query: 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ C V++L +C E P ER + +I
Sbjct: 238 KLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQI 276
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (103), Expect = 3e-05
Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 427 NGFSENNLIDRGGIGYVYK---RRIHYGMEVAVKVFDLQY-REAFKNFDIECDMMKHI-R 481
N ++I G G V K ++ M+ A+K ++ ++F E +++ +
Sbjct: 10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69
Query: 482 HRNLIKIISSCSNDDF 497
H N+I ++ +C + +
Sbjct: 70 HPNIINLLGACEHRGY 85
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (138), Expect = 1e-09
Identities = 30/196 (15%), Positives = 63/196 (32%), Gaps = 22/196 (11%)
Query: 434 LIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCS 493
L+ G + + E A + Q ++ N++ + +
Sbjct: 94 LVAGGELFDFLAEKESLTEEEATEFL-KQILNGVYYLHSLQIAHFDLKPENIMLLDRNVP 152
Query: 494 NDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIET 552
K DFG+A + D T ++APE + D++S G++
Sbjct: 153 KPRIKIIDFGLAHKI---DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYIL 209
Query: 553 FTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAM 612
+ P F G+ + V A ED++F + +
Sbjct: 210 LSGASP----FLGDT----------KQETLANVSAVNYEFEDEYF---SNTSALAKDFIR 252
Query: 613 KCTVESPEERVNAKEI 628
+ V+ P++R+ ++
Sbjct: 253 RLLVKDPKKRMTIQDS 268
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (111), Expect = 3e-06
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 434 LIDRGGIGYVYK-RRIHYGMEVAVKVFDLQY------REAFKNFDIECDMMKHIRHRNLI 486
+ G V K R G++ A K + + ++ + E ++K I+H N+I
Sbjct: 17 ELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVI 76
Query: 487 KIISSCSNDDF 497
+ N
Sbjct: 77 TLHEVYENKTD 87
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Score = 57.8 bits (139), Expect = 2e-09
Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 24/155 (15%)
Query: 478 KHIRHRNLIK---IISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGRE 533
I H ++ + + K DFG+A L + I T AT + APE
Sbjct: 146 HSIVHLDIKPENIMCETKKASSVKIIDFGLATKL---NPDEIVKVTTATAEFAAPEIVDR 202
Query: 534 GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593
V D+++ G++ + P F+GE L+ V E
Sbjct: 203 EPVGFYTDMWAIGVLGYVLLSGLSP----FAGEDDLETL---------QNVKRCDWEFDE 249
Query: 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
D + + F+ + P +R+ +
Sbjct: 250 DAFSSVSPEAKDFI----KNLLQKEPRKRLTVHDA 280
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Score = 51.6 bits (123), Expect = 1e-07
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 434 LIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSC 492
+ G G V++ G K + Y E +M + H LI + +
Sbjct: 36 ELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAF 95
Query: 493 SNDDF 497
+
Sbjct: 96 EDKYE 100
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (135), Expect = 3e-09
Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 25/160 (15%)
Query: 472 IECDMMKHIRHRNLIKIISSCSNDDFKA---DFGMAKPLLKEDQSLIQTQTLATIGYMAP 528
+E K I HR+ +K + N+D DFG AK L E + + T Y++P
Sbjct: 121 LEYLHGKGIIHRD-LKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSP 179
Query: 529 EYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588
E E + D+++ G ++ + P + + + +
Sbjct: 180 ELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA-GNEYLIFQKIIKLEYDFP-------E 231
Query: 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ + V K V +R+ +E+
Sbjct: 232 KFFPKARDLV-------------EKLLVLDATKRLGCEEM 258
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (121), Expect = 2e-07
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 429 FSENNLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRN 484
F ++ G V R + E A+K+ + ++ E D+M + H
Sbjct: 10 FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 69
Query: 485 LIKIISSCSNDD 496
+K+ + +D+
Sbjct: 70 FVKLYFTFQDDE 81
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 56.8 bits (135), Expect = 3e-09
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 217 NKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGN 276
N S + + +L L++ +N++ +P+ L+ L S N +P N
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLE---RLIASFNHLAE-VPELPQN 325
Query: 277 LKVLIKIDLSMNNFSGVIPITIGYLKDLQ 305
LK L + N P ++DL+
Sbjct: 326 LKQL---HVEYNPLRE-FPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 56.0 bits (133), Expect = 6e-09
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 189 NLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS 248
N I +L +L++ +NKL PA L L N + +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-PALPP---RLERLIASFNHLAEVPE 321
Query: 249 TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNN 289
NLK L++ N P +++ DL MN+
Sbjct: 322 LPQNLK---QLHVEYNPLRE-FPDIPESVE-----DLRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 51.4 bits (121), Expect = 2e-07
Identities = 57/331 (17%), Positives = 101/331 (30%), Gaps = 21/331 (6%)
Query: 27 LQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRL 86
L++ + EL L S ++P + L L NS +P +L++L
Sbjct: 32 LRDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSL-TELPELPQSLKSLLVD 86
Query: 87 GLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCN 146
N L+ P L +L +N +++ L I +
Sbjct: 87 NNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 146
Query: 147 ISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRL 206
EE+ L NL + N + L ++ E +L L
Sbjct: 147 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 206
Query: 207 AALFQL------DLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLN 260
++ + LT+L L + + L ++
Sbjct: 207 TTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL 266
Query: 261 LSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPD 320
N + + L ++++S N +P L + L +N L +P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLA-EVPE 321
Query: 321 SIGDLINLKSLDLSNNNLSGI--IPISLEKL 349
NLK L + N L IP S+E L
Sbjct: 322 LPQ---NLKQLHVEYNPLREFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.2 bits (92), Expect = 6e-04
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 23 NSLYLQNVQLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRN 82
N + +LEEL + N +P+ +L RL N +P NL+
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHL-AEVPELPQNLKQ 328
Query: 83 LNRLGLNDNYLTSSTPKLNFLSSL 106
L+ + N L + L
Sbjct: 329 LH---VEYNPLREFPDIPESVEDL 349
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.2 bits (135), Expect = 3e-09
Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 25/158 (15%)
Query: 476 MMKHIRHRNL----IKIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEY 530
I HR+L + S + +DFG++K ED + + T GY+APE
Sbjct: 124 HDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK---MEDPGSVLSTACGTPGYVAPEV 180
Query: 531 GREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590
+ S D +S G++ P F E + K+ + L
Sbjct: 181 LAQKPYSKAVDCWSIGVIAYILLCGYPP----FYDE-------------NDAKLFEQILK 223
Query: 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
++ + + + PE+R ++
Sbjct: 224 AEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQA 261
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.3 bits (117), Expect = 6e-07
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 433 NLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAF-KNFDIECDMMKHIRHRNLIKIIS 490
+++ G V VA+K + E + + E ++ I+H N++ +
Sbjct: 15 DVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDD 74
Query: 491 SCSNDD 496
+
Sbjct: 75 IYESGG 80
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (133), Expect = 5e-09
Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 27/158 (17%)
Query: 478 KHIRHRNL-IKIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEY----- 530
I HR+L I + D K ADFG++ + Q + T +MAPE
Sbjct: 129 NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRR--DSFIGTPYWMAPEVVMCET 186
Query: 531 GREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590
++ DV+S GI LIE + P E+ + LK ++ ++ ++
Sbjct: 187 SKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFK 246
Query: 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ KC ++ + R ++
Sbjct: 247 ------------------DFLKKCLEKNVDARWTTSQL 266
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (128), Expect = 2e-08
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 433 NLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISS 491
+ G G VYK + + A KV D + E +++ +E D++ H N++K++ +
Sbjct: 18 GELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDA 77
Query: 492 CSNDD 496
++
Sbjct: 78 FYYEN 82
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.7 bits (133), Expect = 6e-09
Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 20/153 (13%)
Query: 478 KHIRHRNLI-KIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535
+ HR+L + I + K DFG+A+ + K+ + + + +MAPE +
Sbjct: 153 RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV 212
Query: 536 VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595
+ DV+SFG++L E F+ + G + + L +E
Sbjct: 213 YTIQSDVWSFGVLLWEIFSLGAS---PYPGVKIDEEFCRRL---------------KEGT 254
Query: 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
++ + C P +R E+
Sbjct: 255 RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSEL 287
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 55.1 bits (132), Expect = 7e-09
Identities = 39/154 (25%), Positives = 60/154 (38%), Gaps = 20/154 (12%)
Query: 472 IECDMMKHIRHRNL--IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLA-TIGYMAP 528
+ I HR++ I+ S +N DFG+A+ + S+ QT + T Y++P
Sbjct: 124 LNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSP 183
Query: 529 EYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588
E R V DVYS G +L E T + P + +H D +P S
Sbjct: 184 EQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPS----ARHE 239
Query: 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEER 622
LS + V +K ++PE R
Sbjct: 240 GLSADLDAVV-------------LKALAKNPENR 260
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 49.7 bits (118), Expect = 3e-07
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 434 LIDRGGIGYVYK-RRIHYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKII 489
++ GG+ V+ R + +VAVKV + F E + H ++ +
Sbjct: 14 ILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVY 73
Query: 490 SSCSNDD 496
+ +
Sbjct: 74 DTGEAET 80
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.6 bits (131), Expect = 1e-08
Identities = 31/156 (19%), Positives = 51/156 (32%), Gaps = 30/156 (19%)
Query: 478 KHIRHRNLI-KIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEY---GR 532
++ HR++ I K DFG A + + T +MAPE
Sbjct: 134 HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA------NSFVGTPYWMAPEVILAMD 187
Query: 533 EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592
EG+ DV+S GI IE RK P + + Q
Sbjct: 188 EGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIA-------------------Q 228
Query: 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ + G + N C + P++R ++ +
Sbjct: 229 NESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVL 264
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.6 bits (131), Expect = 1e-08
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 429 FSENNLIDRGGIGYVYK-RRIHYGMEVAVKVFDL---QYREAFKNFDIECDMMKHIRHRN 484
FS+ I G G VY R + VA+K Q E +++ E ++ +RH N
Sbjct: 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76
Query: 485 LIKIISSCSNDD 496
I+ +
Sbjct: 77 TIQYRGCYLREH 88
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Score = 55.1 bits (132), Expect = 1e-08
Identities = 25/161 (15%), Positives = 47/161 (29%), Gaps = 24/161 (14%)
Query: 472 IECDMMKHIRHRNL----IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGYMA 527
+ + H +L I + SN+ DFG+ L + + T T + A
Sbjct: 137 LCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTA---EFAA 193
Query: 528 PEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587
PE V D++S G++ + P F GE + + +
Sbjct: 194 PEVAEGKPVGYYTDMWSVGVLSYILLSGLSP----FGGE-------------NDDETLRN 236
Query: 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ + K + P R+ +
Sbjct: 237 VKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQA 277
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Score = 51.6 bits (123), Expect = 1e-07
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 434 LIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSC 492
+ G G V++ G A K + + E M +RH L+ + +
Sbjct: 33 ELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAF 92
Query: 493 SNDD 496
+D+
Sbjct: 93 EDDN 96
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (131), Expect = 1e-08
Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 29/179 (16%)
Query: 459 FDLQYREAFKNFDIECDMMKHIRHRNLIK--------IISSCSNDDFK-ADFGMAKPLLK 509
F+L RE C+ ++ + N+ I + + K +FG A+ L
Sbjct: 97 FELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKP 156
Query: 510 EDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTL 569
D Y APE + VST D++S G ++ + P F E
Sbjct: 157 GDNF---RLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINP----FLAE--- 206
Query: 570 KHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
+ ++++ + ++ + + + V+ + R+ A E
Sbjct: 207 ----------TNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEA 255
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (108), Expect = 8e-06
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 434 LIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSC 492
+ RG G V++ K ++ + E ++ RHRN++ + S
Sbjct: 12 DLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQ-VLVKKEISILNIARHRNILHLHESF 70
Query: 493 SNDD 496
+ +
Sbjct: 71 ESME 74
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.1 bits (129), Expect = 2e-08
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 421 ELFQATNGFSENNLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAF-KNFDIECDMMK 478
++F ++ + I G G V + VA+K + + + E ++
Sbjct: 2 QVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILL 61
Query: 479 HIRHRNLIKIISSCSNDDFK 498
RH N+I I +
Sbjct: 62 RFRHENIIGINDIIRAPTIE 81
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 9e-06
Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 14/171 (8%)
Query: 472 IECDMMKHIRHRNL-IKIISSCSNDDFK-ADFGMAKPLLK-EDQSLIQTQTLATIGYMAP 528
++ ++ HR+L + + D K DFG+A+ D + T+ +AT Y AP
Sbjct: 122 LKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAP 181
Query: 529 EYGREGRVSTN-GDVYSFGIMLIETFTRKKP------TDEIFSGEMTLKHWVNDLLPISV 581
E + T D++S G +L E + + D++ L + L +
Sbjct: 182 EIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCII 241
Query: 582 MKVVDAHLLSQEDKHFVIKGQCVSFV----FNLAMKCTVESPEERVNAKEI 628
+LLS K+ V + +L K +P +R+ ++
Sbjct: 242 NLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQA 292
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 52.1 bits (123), Expect = 3e-08
Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 3/158 (1%)
Query: 234 RSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEI-GNLKVLIKIDLSMNNFSG 292
++ + IP + L L+ N + G L L+K++L N +G
Sbjct: 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68
Query: 293 VIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDL 352
+ P +Q L L N+++ L LK+L+L +N +S ++P S E L L
Sbjct: 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128
Query: 353 KDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMP 390
+N++ N +S G CG P
Sbjct: 129 TSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 46.7 bits (109), Expect = 2e-06
Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 6/173 (3%)
Query: 118 SNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPI 177
+ L I PR I + + + IS L +L+ + L N+L G P
Sbjct: 16 TGRGLKEI-PRDIPLHTTELLLNDNELGRIS--SDGLFGRLPHLVKLELKRNQLTGIEPN 72
Query: 178 ALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLH 237
A +Q L L N+++ L L L+L N++S +P SF +L +L SL+
Sbjct: 73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132
Query: 238 LGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNF 290
L SN + + +L+ P ++ ++++ DL + F
Sbjct: 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIK---DLPHSEF 182
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 43.6 bits (101), Expect = 2e-05
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 6/174 (3%)
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIAL-GKLQKLQLLNLEYNQLEGSIPDDLCRLAAL 209
IP +I + + L N+L L G+L L L L+ NQL G P+ + +
Sbjct: 23 IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80
Query: 210 FQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGP 269
+L LG NK+ F L L++L+L NQI+ + + L ++
Sbjct: 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
Query: 270 LPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIG 323
+ L K L+ P ++D+Q L ++ + S +S G
Sbjct: 141 NCHLAWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEFKCSSENSEG 191
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (127), Expect = 3e-08
Identities = 35/161 (21%), Positives = 56/161 (34%), Gaps = 31/161 (19%)
Query: 472 IECDMMKHIRHRNLI--KIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGYMAPE 529
++ K I +R+L I+ ADFGM K + D T Y+APE
Sbjct: 116 LQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAK--TNTFCGTPDYIAPE 173
Query: 530 YGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGE---MTLKHWVNDLLPISVMKVVD 586
+ + + D +SFG++L E + P F G+ D
Sbjct: 174 ILLGQKYNHSVDWWSFGVLLYEMLIGQSP----FHGQDEEELFHSIRMDNPFYP------ 223
Query: 587 AHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627
L +E K + +K V PE+R+ +
Sbjct: 224 -RWLEKEAKDLL-------------VKLFVREPEKRLGVRG 250
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (97), Expect = 2e-04
Identities = 9/74 (12%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Query: 429 FSENNLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQY---REAFKNFDIECD-MMKHIRHR 483
F + ++ +G G V+ A+K + + +E + H
Sbjct: 4 FILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHP 63
Query: 484 NLIKIISSCSNDDF 497
L + + +
Sbjct: 64 FLTHMFCTFQTKEN 77
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.0 bits (126), Expect = 3e-08
Identities = 28/169 (16%), Positives = 60/169 (35%), Gaps = 14/169 (8%)
Query: 472 IECDMMKHIRHRNL-IKIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPE 529
+ +++ HR+L + + N + K A+FG+A+ + + + T+ Y P+
Sbjct: 114 LGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCY--SAEVVTLWYRPPD 171
Query: 530 -YGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588
ST+ D++S G + E +P + LK L + +
Sbjct: 172 VLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMT 231
Query: 589 LLSQEDKHFVIKGQCVSFVF---------NLAMKCTVESPEERVNAKEI 628
L + + +L +P +R++A+E
Sbjct: 232 KLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEA 280
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (121), Expect = 3e-08
Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 5/156 (3%)
Query: 237 HLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPI 296
L Q+ + + D L ++ + + ++ ++ + + I
Sbjct: 3 ELKPEQVEQLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRR-SSMAATLRI 59
Query: 297 TIGYLKDLQYLFLEYNRLQG--SIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKD 354
+ +L L L NRL + + NLK L+LS N L + K L L++
Sbjct: 60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 119
Query: 355 INVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMP 390
+ + N L + ++ + + E F L G
Sbjct: 120 LWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHE 155
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (114), Expect = 3e-07
Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 6/146 (4%)
Query: 174 SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNL 233
+ + + K L+ L DL L+ S+ + N+ L
Sbjct: 11 QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAATL-RIIEENIPEL 67
Query: 234 RSLHLGSNQITS---IPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNF 290
SL+L +N++ + S + ++ LNLS N L+ L ++ L N+
Sbjct: 68 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127
Query: 291 SGVIPITIGYLKDLQYLFLEYNRLQG 316
S Y+ ++ F + RL G
Sbjct: 128 SDTFRDQSTYISAIRERFPKLLRLDG 153
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.004
Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 11/142 (7%)
Query: 73 IPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGN 132
+ + ++ L+ L L + ++ L N
Sbjct: 12 LKLIMSKRYDGSQQALDLK-------GLRSDPDLVAQNIDVVLNRRSSMAA-TLRIIEEN 63
Query: 133 LSQSMEIFWMHSCNISG--GIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNL 190
+ + + + + + + + NL + L GN+L + K KL+ L L
Sbjct: 64 IPE-LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122
Query: 191 EYNQLEGSIPDDLCRLAALFQL 212
+ N L + D ++A+ +
Sbjct: 123 DGNSLSDTFRDQSTYISAIRER 144
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (126), Expect = 4e-08
Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 13/168 (7%)
Query: 472 IECDMMKHIRHRNL--IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGYMAPE 529
+ + HR+L ++ + ADFG+A+ + T + T+ Y APE
Sbjct: 115 LAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR--TYTHEVVTLWYRAPE 172
Query: 530 -YGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588
ST D++S G + E TR+ + + + P V+
Sbjct: 173 ILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTS 232
Query: 589 LLSQEDKHFVIKGQCVSFVF--------NLAMKCTVESPEERVNAKEI 628
+ + Q S V +L + P +R++AK
Sbjct: 233 MPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAA 280
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (109), Expect = 5e-06
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 429 FSENNLIDRGGIGYVYK-RRIHYGMEVAVKVF--DLQYREAFKNFDIECDMMKHIRHRNL 485
F + I G G VYK R G VA+K D + E ++K + H N+
Sbjct: 4 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 63
Query: 486 IKIISSCSNDD 496
+K++ ++
Sbjct: 64 VKLLDVIHTEN 74
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (125), Expect = 4e-08
Identities = 45/276 (16%), Positives = 88/276 (31%), Gaps = 19/276 (6%)
Query: 40 LWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPK 99
L G N + + + + + + F R + + L+++ + ST
Sbjct: 7 LTGKNLHPDVTGRLL-SQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLH 64
Query: 100 LNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNIS-GGIPEEISNL 158
LS C L+ S L + + S + + S + +S+
Sbjct: 65 ----GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120
Query: 159 TNLIAIYLGGNKLNG------SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQL 212
+ L + L ++ + +L L N + + + R L L
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180
Query: 213 DLGSN-KLSGFVPASFGNLTNLRSLHL-GSNQIT-SIPSTLLNLKDILYLNLSSNFFTGP 269
DL + L F L L+ L L I L + + L + G
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240
Query: 270 LPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQ 305
L L L + ++ ++F+ + TIG K+ +
Sbjct: 241 LQLLKEALP---HLQINCSHFTTIARPTIGNKKNQE 273
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (121), Expect = 1e-07
Identities = 38/289 (13%), Positives = 86/289 (29%), Gaps = 29/289 (10%)
Query: 61 RLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNN 120
L+L + + P+ G L + + P S +++ SN+
Sbjct: 4 TLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR----VQHMDLSNS 56
Query: 121 SLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALG 180
++ I + ++ + +S I ++ +NL+ + L G +
Sbjct: 57 VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116
Query: 181 KLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGS 240
+L L + + A + LSG+ + + +
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 176
Query: 241 NQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLS-MNNFSGVIPITIG 299
S E L L + LS + + +G
Sbjct: 177 LVH--------------LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 222
Query: 300 YLKDLQYLFLEYNRLQGSIPDSIGDLI--NLKSLDLSNNNLSGIIPISL 346
+ L+ L ++ G +PD L+ L L ++ ++ + I ++
Sbjct: 223 EIPTLKTL-----QVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTI 266
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 4e-07
Identities = 36/246 (14%), Positives = 79/246 (32%), Gaps = 38/246 (15%)
Query: 144 SCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEG-SIPDD 202
N+ + + + +IA + ++ + ++Q ++L + +E ++
Sbjct: 9 GKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLHGI 66
Query: 203 LCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSL------HLGSNQITSIPSTLLNLKDI 256
L + + L L L +LS + + +NL L + ++ S+ L ++
Sbjct: 67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 126
Query: 257 LY---------------------------LNLSSNFFTGPLPLEIGNLKVLIKIDLSMN- 288
N L + L+ +DLS +
Sbjct: 127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 186
Query: 289 NFSGVIPITIGYLKDLQYLFLEY-NRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLE 347
L LQ+L L + +G++ LK+L + G + + E
Sbjct: 187 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKE 246
Query: 348 KLLDLK 353
L L+
Sbjct: 247 ALPHLQ 252
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 52.0 bits (123), Expect = 5e-08
Identities = 34/221 (15%), Positives = 68/221 (30%), Gaps = 25/221 (11%)
Query: 55 NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKY 114
+ ++ ++ + T +L + L +T+ + + L
Sbjct: 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-------IEGVQYLNNLIG 67
Query: 115 FSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGG------ 168
+N + + P +E+ N+S + +L + +
Sbjct: 68 LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127
Query: 169 -------NKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSG 221
I L L + S L L+ L L NK+S
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187
Query: 222 FVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLS 262
P +L NL +HL +NQI+ + L N ++ + L+
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 50.8 bits (120), Expect = 1e-07
Identities = 38/218 (17%), Positives = 67/218 (30%), Gaps = 25/218 (11%)
Query: 157 NLTNLIAIYLGGNKLNGSIPIA-LGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLG 215
L N I I G + + ++ A L + L +EG + L L L+L
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELK 71
Query: 216 SNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS---------------TLLNLKDILYLN 260
N+++ P L + S + T + L
Sbjct: 72 DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131
Query: 261 LSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPD 320
+ + LS+ N + L L L + N++ P
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190
Query: 321 SIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVS 358
+ L NL + L NN +S + P L +L + ++
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 46.6 bits (109), Expect = 3e-06
Identities = 36/212 (16%), Positives = 63/212 (29%), Gaps = 23/212 (10%)
Query: 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND 90
L + L +G + + + L LEL+ N P +NL ++ +
Sbjct: 39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAPL-----KNLTKITELE 91
Query: 91 NYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGG 150
S + + + L + S
Sbjct: 92 LSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT 151
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210
+ +S S L L KL L + N++ P L L L
Sbjct: 152 NLQYLSI-----------GNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLI 198
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQ 242
++ L +N++S P N +NL + L +NQ
Sbjct: 199 EVHLKNNQISDVSP--LANTSNLFIVTL-TNQ 227
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 43.1 bits (100), Expect = 4e-05
Identities = 34/257 (13%), Positives = 70/257 (27%), Gaps = 47/257 (18%)
Query: 79 NLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSME 138
L N ++ + +T + ++ + S + I
Sbjct: 17 ALANAIKIAAGKSNVTD-------TVTQADLDGITTLSAFGTGVTTI------------- 56
Query: 139 IFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGS 198
E + L NLI + L N++ P+ L+ + +
Sbjct: 57 --------------EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA 102
Query: 199 IPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILY 258
I ++ ++ L + I +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL---------YLDLNQITNISPLAGLTNL 153
Query: 259 LNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSI 318
LS + NL L + N S + P+ L +L + L+ N++
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQISDVS 211
Query: 319 PDSIGDLINLKSLDLSN 335
P + + NL + L+N
Sbjct: 212 P--LANTSNLFIVTLTN 226
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (124), Expect = 8e-08
Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 13/160 (8%)
Query: 478 KHIRHRNL--IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535
+ HR+L I+ + S ADFG+A+ + T + T+ Y APE +
Sbjct: 135 HRVVHRDLKPQNILVTSSGQIKLADFGLAR---IYSFQMALTSVVVTLWYRAPEVLLQSS 191
Query: 536 VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595
+T D++S G + E F RK S L ++ + L ++
Sbjct: 192 YATPVDLWSVGCIFAEMFRRKPLFRGS-SDVDQLGKILDVIGLPGEEDWPRDVALPRQAF 250
Query: 596 HFVIKGQCVSFV-------FNLAMKCTVESPEERVNAKEI 628
H FV +L +KC +P +R++A
Sbjct: 251 HSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSA 290
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (124), Expect = 8e-08
Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 21/156 (13%)
Query: 478 KHIRHRNL----IKIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGR 532
+I HR++ + S N K DFG AK + T T Y+APE
Sbjct: 130 INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNS---LTTPCYTPYYVAPEVLG 186
Query: 533 EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592
+ + D++S G+++ P ++ + + +S+
Sbjct: 187 PEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSE 246
Query: 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
E K + P +R+ E
Sbjct: 247 EVKMLI-------------RNLLKTEPTQRMTITEF 269
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (86), Expect = 0.004
Identities = 8/62 (12%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 434 LIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSC 492
++ G G V + + A+K+ +A + ++ + + ++++I+
Sbjct: 19 VLGLGINGKVLQIFNKRTQEKFALKMLQ-DCPKARREVEL---HWRASQCPHIVRIVDVY 74
Query: 493 SN 494
N
Sbjct: 75 EN 76
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.9 bits (121), Expect = 2e-07
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 427 NGFSENNLIDRGGIGYVYK-RRIHYGMEVAVKVFDL------QYREAFKNFDIECDMMKH 479
N FS + +I RGG G VY R+ G A+K D Q N I ++
Sbjct: 4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63
Query: 480 IRHRNLIKIISSCSNDD 496
++ + + D
Sbjct: 64 GDCPFIVCMSYAFHTPD 80
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (119), Expect = 3e-07
Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 23/204 (11%)
Query: 438 GGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF 497
+ + K +K + L + + + + ++ N + N
Sbjct: 84 TDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNN----LLLDENGVL 139
Query: 498 K-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRV-STNGDVYSFGIMLIETFTR 555
K ADFG+AK +++ T + T Y APE R+ D+++ G +L E R
Sbjct: 140 KLADFGLAKSFGSPNRA--YTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLR 197
Query: 556 KKPTDEIFSGE---MTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVF---- 608
G+ L L + + D L G + +F
Sbjct: 198 VPF----LPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAG 253
Query: 609 ----NLAMKCTVESPEERVNAKEI 628
+L + +P R+ A +
Sbjct: 254 DDLLDLIQGLFLFNPCARITATQA 277
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (114), Expect = 1e-06
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 433 NLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYR-----EAFKNFDIECDMMKHIRHRNLI 486
+ + G VYK R + VA+K L +R + E +++ + H N+I
Sbjct: 4 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63
Query: 487 KIISSCSNDD 496
++ + +
Sbjct: 64 GLLDAFGHKS 73
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 50.2 bits (119), Expect = 3e-07
Identities = 21/163 (12%), Positives = 45/163 (27%), Gaps = 25/163 (15%)
Query: 478 KHIRHRNLI-------KIISSCSNDDFKADFGMAK----PLLKEDQSLIQTQTLA-TIGY 525
K + +R++ + S +N + DFGM K P+ K+ + + L+ T Y
Sbjct: 120 KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARY 179
Query: 526 MAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVV 585
M+ S D+ + G + + W + K
Sbjct: 180 MSINTHLGREQSRRDDLEALGHVFMYFLRGS-------------LPWQGLKAATNKQKYE 226
Query: 586 DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
Q + + + + + +
Sbjct: 227 RIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYL 269
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.7 bits (118), Expect = 5e-07
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 433 NLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKI 488
+ G G V+ R H G A+KV + + ++ + E M+ + H +I++
Sbjct: 10 RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRM 69
Query: 489 ISSCSNDDF 497
+ +
Sbjct: 70 WGTFQDAQQ 78
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.5 bits (102), Expect = 5e-05
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 472 IECDMMKHIRHRNLI-KIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPE 529
+E K I +R+L + I N K DFG AK + +L T Y+APE
Sbjct: 117 LEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGT-----PDYIAPE 171
Query: 530 YGREGRVSTNGDVYSFGIMLIETFTRKKP 558
+ + D +SFGI++ E P
Sbjct: 172 VVSTKPYNKSIDWWSFGILIYEMLAGYTP 200
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.9 bits (118), Expect = 5e-07
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 422 LFQATNGFSENNLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYR--EAFKNFDIECDMMK 478
+++ + + + G G V G+ VAVK ++ K E ++K
Sbjct: 13 IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLK 72
Query: 479 HIRHRNLIKIISSCSNDDFKADFGM 503
H++H N+I ++ + +F
Sbjct: 73 HMKHENVIGLLDVFTPARSLEEFND 97
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 6e-04
Identities = 29/224 (12%), Positives = 61/224 (27%), Gaps = 21/224 (9%)
Query: 419 YLELFQATNGFSENNLI----DRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIEC 474
L++F E N + G + + V+ Q K
Sbjct: 82 LLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSAD 141
Query: 475 DMMKHIRHRNLIKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREG 534
+ + ++ N + + + DFG+A+ E + T
Sbjct: 142 IIHRDLKPSN---LAVNEDCELKILDFGLARHTDDEMTGYVAT----RWYRAPEIMLNWM 194
Query: 535 RVSTNGDVYSFGIMLIETFTRKKP---------TDEIFSGEMTLKHWVNDLLPISVMKVV 585
+ D++S G ++ E T + I T + + +
Sbjct: 195 HYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNY 254
Query: 586 DAHLLSQEDKHFVIKGQCVS-FVFNLAMKCTVESPEERVNAKEI 628
L +F + +L K V ++R+ A +
Sbjct: 255 IQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQA 298
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (117), Expect = 5e-07
Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 16/173 (9%)
Query: 472 IECDMMKHIRHRNL-IKIISSCSNDDFK-ADFGMAKPL--LKEDQSLIQTQTLATIGYMA 527
+ I HR++ + + K ADFG+A+ K Q T + T+ Y
Sbjct: 130 LYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRP 189
Query: 528 PEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTD-----------EIFSGEMTLKHWVND 575
PE R D++ G ++ E +TR G +T + W N
Sbjct: 190 PELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNV 249
Query: 576 LLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
K+ ++ K + + +L K V P +R+++ +
Sbjct: 250 DNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDA 302
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (117), Expect = 6e-07
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 429 FSENNLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIK 487
+++ +I G G VY+ + G VA+K + + + E +M+ + H N+++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVR 77
Query: 488 IISSCSNDDFKAD 500
+ + K D
Sbjct: 78 LRYFFYSSGEKKD 90
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 2e-05
Identities = 30/166 (18%), Positives = 51/166 (30%), Gaps = 21/166 (12%)
Query: 478 KHIRHRNLIKIISSCSNDDFK---ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREG 534
I HR++ D DFG AK L + +
Sbjct: 141 FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL--VRGEPNVSYICSRYYRAPELIFGAT 198
Query: 535 RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEM---TLKHWVNDLLPISVMKVVDAHLLS 591
+++ DV+S G +L E + F G+ L + L + ++ + +
Sbjct: 199 DYTSSIDVWSAGCVLAELLLGQPI----FPGDSGVDQLVEIIKVLGTPTREQIREMNPNY 254
Query: 592 QEDKHFVIKGQCVSFVF---------NLAMKCTVESPEERVNAKEI 628
E K IK + VF L + +P R+ E
Sbjct: 255 TEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEA 300
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 48.5 bits (114), Expect = 6e-07
Identities = 38/214 (17%), Positives = 75/214 (35%), Gaps = 21/214 (9%)
Query: 151 IPEEIS------NLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLC 204
+P I I L + ++ +L + + + ++ +
Sbjct: 10 VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQ 65
Query: 205 RLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSN 264
L + +L L NKL+ L NL++L + +LS
Sbjct: 66 YLPNVTKLFLNGNKLTDIK-----PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120
Query: 265 FFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGD 324
+ +L L + L N + + ++ L L L LE N++ +P +
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAG 176
Query: 325 LINLKSLDLSNNNLSGIIPISLEKLLDLKDINVS 358
L L++L LS N++S + L L +L + +
Sbjct: 177 LTKLQNLYLSKNHISDLRA--LAGLKNLDVLELF 208
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 47.7 bits (112), Expect = 9e-07
Identities = 41/209 (19%), Positives = 84/209 (40%), Gaps = 21/209 (10%)
Query: 55 NASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKY 114
++ + L+ S + L +++++ N++ + S + + +
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS-------VQGIQYLPNVTK 72
Query: 115 FSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGS 174
+ N L + + NL +F + +++ L +L + G + +NG
Sbjct: 73 LFLNGNKLTD--IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGL 130
Query: 175 IPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLR 234
+ + QL +L + + L RL L L L N++S VP LT L+
Sbjct: 131 VHLP-------QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181
Query: 235 SLHLGSNQITSIPSTLLNLKDILYLNLSS 263
+L+L N I+ + + L LK++ L L S
Sbjct: 182 NLYLSKNHISDLRA-LAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 39.6 bits (91), Expect = 5e-04
Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 13/172 (7%)
Query: 31 QLQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLND 90
+L ++++++ ++ I +++L L N P L N
Sbjct: 44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK 101
Query: 91 NYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFW--------M 142
SS L L SLS L + +GN + +
Sbjct: 102 VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL 161
Query: 143 HSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQ 194
+ ++ LT L +YL N ++ + AL L+ L +L L ++Q
Sbjct: 162 SLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLEL-FSQ 210
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (114), Expect = 6e-07
Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 4/215 (1%)
Query: 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYL 93
N EL L ++E+ N I +
Sbjct: 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE--IRIEK 87
Query: 94 TSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPE 153
++ +N + + + I +L + + + +
Sbjct: 88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147
Query: 154 EISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLD 213
+ + ++L N + A Q +L + N LE D + LD
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207
Query: 214 LGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS 248
+ ++ NL LR+ + +P+
Sbjct: 208 ISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (107), Expect = 4e-06
Identities = 27/218 (12%), Positives = 63/218 (28%), Gaps = 5/218 (2%)
Query: 48 TIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLS 107
IPS + L + F +L ++ ++ N + F +
Sbjct: 22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79
Query: 108 NCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLG 167
+ + + ++ + + NL + + + I +
Sbjct: 80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139
Query: 168 GNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASF 227
+ + + + G + +L L N ++ +N L F
Sbjct: 140 IHTIERNSFV--GLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVF 197
Query: 228 GNLTNLRSLHLGSNQITSIPSTLL-NLKDILYLNLSSN 264
+ L + +I S+PS L NLK + + +
Sbjct: 198 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (97), Expect = 1e-04
Identities = 30/216 (13%), Positives = 59/216 (27%), Gaps = 7/216 (3%)
Query: 151 IPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALF 210
IP ++ N I + KL A L+ + + N + I D+
Sbjct: 23 IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80
Query: 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQIT-----SIPSTLLNLKDILYLNLSSNF 265
+ +L + + K +L + + N
Sbjct: 81 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140
Query: 266 FTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDL 325
T +G + + L+ N + + + + N L+ D
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200
Query: 326 INLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNK 361
LD+S + + LE L L+ + K
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (111), Expect = 8e-07
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 6/136 (4%)
Query: 225 ASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKID 284
A + N R L L +I I + L ++ S N L+ L +
Sbjct: 12 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLL 69
Query: 285 LSMNNFSGVIPITIGYLKDLQYLFLEYNRLQG-SIPDSIGDLINLKSLDLSNNN---LSG 340
++ N + L DL L L N L D + L +L L + N
Sbjct: 70 VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129
Query: 341 IIPISLEKLLDLKDIN 356
+ K+ ++ ++
Sbjct: 130 YRLYVIYKVPQVRVLD 145
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 8e-05
Identities = 23/144 (15%), Positives = 52/144 (36%), Gaps = 12/144 (8%)
Query: 49 IPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSN 108
+ NA + L+L+ I N L + + +DN + L
Sbjct: 11 AAQYT-NAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNE-------IRKLDGFPL 61
Query: 109 CKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGG 168
+ LK +NN + I L E+ ++ + G + +++L +L + +
Sbjct: 62 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 121
Query: 169 NK---LNGSIPIALGKLQKLQLLN 189
N + K+ ++++L+
Sbjct: 122 NPVTNKKHYRLYVIYKVPQVRVLD 145
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 1e-04
Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 6/130 (4%)
Query: 209 LFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTG 268
+LDL K+ + L ++ N+I + L+ + L +++N
Sbjct: 20 DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGF-PLLRRLKTLLVNNNRICR 77
Query: 269 PLPLEIGNLKVLIKIDLSMNNFSGVIPIT-IGYLKDLQYLFLE---YNRLQGSIPDSIGD 324
L L ++ L+ N+ + + + LK L YL + + I
Sbjct: 78 IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK 137
Query: 325 LINLKSLDLS 334
+ ++ LD
Sbjct: 138 VPQVRVLDFQ 147
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (115), Expect = 1e-06
Identities = 33/164 (20%), Positives = 54/164 (32%), Gaps = 41/164 (25%)
Query: 472 IECDMMKHIRHRNL--IKIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAP 528
+ + HR++ I+ + + K DFG L + + T T Y P
Sbjct: 123 VRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALL----KDTVYTDFDGTRVYSPP 178
Query: 529 EYGREGRVSTNG-DVYSFGIMLIETFTRKKP---TDEIFSGEMTLKHWVNDLLPISVMKV 584
E+ R R V+S GI+L + P +EI G++ + V
Sbjct: 179 EWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------- 227
Query: 585 VDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
S E +H + C P +R +EI
Sbjct: 228 ------SSECQHLI-------------RWCLALRPSDRPTFEEI 252
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (96), Expect = 2e-04
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 434 LIDRGGIGYVYK-RRIHYGMEVAVKVF------DLQYREAFKNFDIECDMMKHIR--HRN 484
L+ GG G VY R+ + VA+K D +E ++K +
Sbjct: 11 LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 70
Query: 485 LIKIISSCSNDD 496
+I+++ D
Sbjct: 71 VIRLLDWFERPD 82
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (113), Expect = 2e-06
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 434 LIDRGGIGYVYK-RRIHYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIIS 490
+ G G V G +VA+K + K E ++KH+RH N+I ++
Sbjct: 25 PVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLD 84
Query: 491 SCSNDDFKADF 501
+ D+ DF
Sbjct: 85 VFTPDETLDDF 95
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 4e-04
Identities = 35/163 (21%), Positives = 51/163 (31%), Gaps = 16/163 (9%)
Query: 478 KHIRHRNL--IKIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535
I HR+L + + + DFG+A+ + S + + R
Sbjct: 140 AGIIHRDLKPGNLAVNEDCELKILDFGLAR----QADSEMTGYVVTRWYRAPEVILNWMR 195
Query: 536 VSTNGDVYSFGIMLIETFTRKKP---------TDEIFSGEMTLKHWVNDLLPISVMKVVD 586
+ D++S G ++ E T K EI T L K
Sbjct: 196 YTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYM 255
Query: 587 AHLLSQEDKHFVIKGQCVSFVF-NLAMKCTVESPEERVNAKEI 628
L E K F S + NL K V E+RV A E
Sbjct: 256 KGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEA 298
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (112), Expect = 2e-06
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 276 NLKVLIKIDLSMNNFSGV----IPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLI----- 326
VL + L+ + S + T+ L+ L L N L + + + +
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 327 NLKSLDLSNNNLSGIIPISLEKLLDLK 353
L+ L L + S + L+ L K
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDK 453
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (109), Expect = 5e-06
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 276 NLKVLIKIDLSMNNFSGV-IPITIGYLKDLQYLFLEYNRLQG----SIPDSIGDLINLKS 330
+++ L D+ S + L+ Q + L+ L I ++ L
Sbjct: 3 DIQSL---DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59
Query: 331 LDLSNNNLSGIIPISLEKLL 350
L+L +N L + + + L
Sbjct: 60 LNLRSNELGDVGVHCVLQGL 79
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (106), Expect = 1e-05
Identities = 17/90 (18%), Positives = 26/90 (28%), Gaps = 11/90 (12%)
Query: 212 LDLGSNKLSGF-VPASFGNLTNLRSLHLGSNQIT-----SIPSTLLNLKDILYLNLSSNF 265
LD+ +LS L + + L +T I S L + LNL SN
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66
Query: 266 FTGPLPLEIG-----NLKVLIKIDLSMNNF 290
+ + K+ L
Sbjct: 67 LGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (103), Expect = 3e-05
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 224 PASFGNLTNLRSLHLGSNQIT-----SIPSTLLNLKDILYLNLSSNFFTGPLPLEIG--- 275
+ LR L L ++ S+ +TLL + L+LS+N L++
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 276 --NLKVLIKIDLSMNNFSGVIPITIGYLK 302
+L ++ L +S + + L+
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALE 450
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 9e-05
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 304 LQYLFLEYNRLQG----SIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLD-----LKD 354
L+ L+L + S+ ++ +L+ LDLSNN L + L + + L+
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430
Query: 355 INVSFNKLEGEIPRE 369
+ + E+
Sbjct: 431 LVLYDIYWSEEMEDR 445
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (98), Expect = 1e-04
Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 5/91 (5%)
Query: 255 DILYLNLSSNFFT-GPLPLEIGNLKVLIKIDLSMNNFSGVIPITIG----YLKDLQYLFL 309
DI L++ + + L+ + L + I L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 310 EYNRLQGSIPDSIGDLINLKSLDLSNNNLSG 340
N L + + S + +L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (98), Expect = 1e-04
Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 232 NLRSLHLGSNQITS--IPSTLLNLKDILYLNLSSNFFTG----PLPLEIGNLKVLIKIDL 285
+++SL + +++ L L+ + L T + + L +++L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 286 SMNNFSGVIPITIGYLKDLQYLFLEYNRLQG 316
N V + ++ LQ
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (97), Expect = 2e-04
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 160 NLIAIYLGGNKLNGS-IPIALGKLQKLQLLNLEYNQLEG----SIPDDLCRLAALFQLDL 214
++ ++ + +L+ + L LQ+ Q++ L+ L I L AL +L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 215 GSNKLSGFVPASFG-----NLTNLRSLHLGSNQ 242
SN+L ++ L L +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (95), Expect = 3e-04
Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 9/103 (8%)
Query: 137 MEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNG----SIPIALGKLQKLQLLNLEY 192
+ + + + L ++L ++ S+ L L+ L+L
Sbjct: 347 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 406
Query: 193 NQLEGSIPDDLCR-----LAALFQLDLGSNKLSGFVPASFGNL 230
N L + L L QL L S + L
Sbjct: 407 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (95), Expect = 3e-04
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 9/109 (8%)
Query: 107 SNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISG----GIPEEISNLTNLI 162
+ + ++ L + +G + + W+ C++S + + +L
Sbjct: 341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 400
Query: 163 AIYLGGNKLNGSIPIALGKLQK-----LQLLNLEYNQLEGSIPDDLCRL 206
+ L N L + + L + + L+ L L + D L L
Sbjct: 401 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 5e-04
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 5/86 (5%)
Query: 142 MHSCNIS-GGIPEEISNLTNLIAIYLGGNKLNG----SIPIALGKLQKLQLLNLEYNQLE 196
+ +S E + L + L L I AL L LNL N+L
Sbjct: 9 IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68
Query: 197 GSIPDDLCRLAALFQLDLGSNKLSGF 222
+ + + L
Sbjct: 69 DVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 6e-04
Identities = 10/90 (11%), Positives = 27/90 (30%), Gaps = 4/90 (4%)
Query: 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISG----GIPEEISNLTNLIAIYLG 167
++ L + L Q ++ + C ++ I + L + L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 168 GNKLNGSIPIALGKLQKLQLLNLEYNQLEG 197
N+L + + + ++ L+
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (90), Expect = 0.001
Identities = 13/100 (13%), Positives = 23/100 (23%), Gaps = 4/100 (4%)
Query: 41 WGNNFSGTIPSFIFNASKLSRLELQMNSF----YGFIPNTFGNLRNLNRLGLNDNYLTSS 96
S L L L + T +L L L++N L +
Sbjct: 353 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412
Query: 97 TPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQS 136
S L+ + + + L +
Sbjct: 413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKD 452
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (86), Expect = 0.003
Identities = 13/118 (11%), Positives = 30/118 (25%), Gaps = 5/118 (4%)
Query: 34 NLEELLLWGNNFSGT-IPSFIFNASKLSRLELQMNSF----YGFIPNTFGNLRNLNRLGL 88
+++ L + S + + + L I + L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 89 NDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCN 146
N L + ++ S N L G + + +++ +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (86), Expect = 0.003
Identities = 16/113 (14%), Positives = 29/113 (25%), Gaps = 21/113 (18%)
Query: 72 FIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIG 131
L L L D ++ S+ + ++L L+ SNN L +
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCS-SLAATLLANHSLRELDLSNNCLGDAGILQLV 418
Query: 132 NLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQK 184
+ L + L + + L L+K
Sbjct: 419 ESVRQ--------------------PGCLLEQLVLYDIYWSEEMEDRLQALEK 451
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Score = 47.2 bits (111), Expect = 2e-06
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 433 NLIDRGGIGYVYKRRIHYGMEVAVKVFDL--QYREAFKNFDIECDMMKHIRHRNLIKIIS 490
I G G VYK + +YG A+K L + E ++K ++H N++K+
Sbjct: 8 EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYD 67
Query: 491 SCSND 495
Sbjct: 68 VIHTK 72
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Score = 47.2 bits (111), Expect = 3e-06
Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 13/162 (8%)
Query: 478 KHIRHRNLIKIISSCSNDD--FKADFGMAKPLLKEDQSLIQTQTLATIGYMAPE-YGREG 534
+ + HR+L + + ADFG+A+ + + T+ Y AP+
Sbjct: 119 RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHE--IVTLWYRAPDVLMGSK 176
Query: 535 RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLP-------ISVMKVVDA 587
+ ST D++S G + E + + ++ + P ++ + D
Sbjct: 177 KYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDP 236
Query: 588 HLLSQEDKHFVIKGQCVSFVF-NLAMKCTVESPEERVNAKEI 628
+ E + + + +L K P +R+ AK+
Sbjct: 237 NFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQA 278
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 47.0 bits (111), Expect = 3e-06
Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 28/159 (17%)
Query: 478 KHIRHRNL-IKIISSCSNDDFK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGR 535
+I HR+L + I + + K DFG + L D + T Y+APE
Sbjct: 129 LNIVHRDLKPENILLDDDMNIKLTDFGFSCQL---DPGEKLREVCGTPSYLAPEIIECSM 185
Query: 536 VSTNG------DVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589
+ D++S G+++ P F M ++ +
Sbjct: 186 NDNHPGYGKEVDMWSTGVIMYTLLAGSPP----FWHR-------------KQMLMLRMIM 228
Query: 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628
V +L + V P++R A+E
Sbjct: 229 SGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEA 267
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (111), Expect = 3e-06
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 427 NGFSENNLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRH 482
N F L+ +G G V R G A+K+ + ++ + E ++++ RH
Sbjct: 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64
Query: 483 RNLIKIISSCSNDDF 497
L + + D
Sbjct: 65 PFLTALKYAFQTHDR 79
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (103), Expect = 3e-05
Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 9/123 (7%)
Query: 438 GGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLI-KIISSCSNDD 496
GG + + R E + + + A +E + + +R++ + + +
Sbjct: 89 GGELFFHLSRERVFTEERARFYGAEIVSA-----LEYLHSRDVVYRDIKLENLMLDKDGH 143
Query: 497 FK-ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR 555
K DFG+ K + + ++ T Y+APE + D + G+++ E
Sbjct: 144 IKITDFGLCKEGISDGATMKTF--CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG 201
Query: 556 KKP 558
+ P
Sbjct: 202 RLP 204
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 44.7 bits (104), Expect = 9e-06
Identities = 38/199 (19%), Positives = 76/199 (38%), Gaps = 19/199 (9%)
Query: 156 SNLTNLIAIYLGGNKLNGSIPIA-LGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDL 214
+ L + LG + ++ L ++ LQ L ++G + L L Q++
Sbjct: 15 TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINF 69
Query: 215 GSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEI 274
+N+L+ P NLT L + + +NQI I ++ +
Sbjct: 70 SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 127
Query: 275 GNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLS 334
NL L ++++ S + +T + + + + +L L+ LD+S
Sbjct: 128 TNLNRLELSSNTISDISALSGLTSLQQLNFSSNQV-------TDLKPLANLTTLERLDIS 180
Query: 335 NNNLSGIIPIS----LEKL 349
+N +S I ++ LE L
Sbjct: 181 SNKVSDISVLAKLTNLESL 199
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 1e-05
Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 19/165 (11%)
Query: 231 TNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEI-GNLKVLIKIDLSMNN 289
L + L +++ L + + L L L L + + +
Sbjct: 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 290 FSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPIS-LEK 348
V P + L L L +N L+ S+ ++L+ L LS N L + L++
Sbjct: 68 LRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126
Query: 349 LLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQ 393
+ V KL+ L MPN
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGP----------------LAHMPNAS 155
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 4e-04
Identities = 24/151 (15%), Positives = 41/151 (27%), Gaps = 5/151 (3%)
Query: 202 DLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQ-ITSIPS-TLLNLKDILYL 259
D C L + NL L++ + Q + + L L ++ L
Sbjct: 3 DACCPHGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61
Query: 260 NLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSI- 318
+ + P L +++LS N + LQ L L N L S
Sbjct: 62 TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCA 120
Query: 319 PDSIGDLINLKSLDLSNNNLSGIIPISLEKL 349
+ + L L +
Sbjct: 121 LRWLQRWEEEGLGGVPEQKLQCHGQGPLAHM 151
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Score = 42.9 bits (100), Expect = 6e-05
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 433 NLIDRGGIGYVYK-RRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIR-HRNLIKIIS 490
+ RG V++ I +V VK+ ++ K E +++++R N+I +
Sbjct: 41 RKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKR---EIKILENLRGGPNIITLAD 97
Query: 491 SCSNDDFK 498
+ +
Sbjct: 98 IVKDPVSR 105
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 41.8 bits (96), Expect = 2e-04
Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 25/132 (18%)
Query: 132 NLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALG------KLQKL 185
L + S + + + NL + L L+ A+ + L
Sbjct: 216 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 275
Query: 186 QLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITS 245
Q L L+YN++E L + +L L L N+ +
Sbjct: 276 QTLRLQYNEIELDAVRTLK-------------------TVIDEKMPDLLFLELNGNRFSE 316
Query: 246 IPSTLLNLKDIL 257
+ ++++
Sbjct: 317 EDDVVDEIREVF 328
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 41.0 bits (94), Expect = 3e-04
Identities = 48/329 (14%), Positives = 98/329 (29%), Gaps = 32/329 (9%)
Query: 86 LGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDG----ILPRAIGNLS--QSMEI 139
L + +T+ K + + L +K S N++ L I + + E
Sbjct: 8 KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66
Query: 140 FWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSI 199
+ + + IPE + L + + + S Q+ + L + +
Sbjct: 67 SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126
Query: 200 PDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYL 259
L + V N LRS+ G N++ + +
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186
Query: 260 NL--------------SSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQ 305
L + L + ++ + + S + I + +L+
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246
Query: 306 YLFLEYNRLQGSIPDSIGD------LINLKSLDLSNNNLSGIIPISL-----EKLLDLKD 354
L L L ++ D I L++L L N + +L EK+ DL
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306
Query: 355 INVSFNKLEGEIPREGSFRNFLAESFKGN 383
+ ++ N+ E R + +G
Sbjct: 307 LELNGNRFSEEDDVVDEIREVFSTRGRGE 335
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 37.9 bits (86), Expect = 0.003
Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 5/106 (4%)
Query: 302 KDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSG----IIPISLEKLLDLKDINV 357
K L+ + + S+ + + ++K + LS N + + ++ DL+
Sbjct: 8 KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66
Query: 358 SFNKLEGEIPREGSFRNFLAESFKGNELLCGMPNLQVPPCRTRIHH 403
S L ++ L + T
Sbjct: 67 SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP 112
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.7 bits (97), Expect = 2e-04
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 4/90 (4%)
Query: 435 IDRGGIGYVYK-RRIHYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIIS 490
+ G G V + G A+K+ D Q + ++ E +++ + L+K+
Sbjct: 49 LGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEF 108
Query: 491 SCSNDDFKADFGMAKPLLKEDQSLIQTQTL 520
S ++ + L +
Sbjct: 109 SFKDNSNLYMVMEYVAGGEMFSHLRRIGRF 138
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 4e-04
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 433 NLIDRGGIGYVYKRR----IHYGMEVAVKVFD----LQYREAFKNFDIECDMMKHIRHRN 484
++ G G V+ R G A+KV +Q + ++ E +++HIR
Sbjct: 30 KVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSP 89
Query: 485 LIKIISSCSNDDFKADFGM 503
+ + + K +
Sbjct: 90 FLVTLHYAFQTETKLHLIL 108
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 0.001
Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 22/155 (14%)
Query: 472 IECDMMKHIRHRNLI--KIISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGYMAPE 529
+E I +R++ I+ + DFG++ D++ TI YMAP+
Sbjct: 142 LEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLS-KEFVADETERAYDFCGTIEYMAPD 200
Query: 530 YGREGRVSTNG--DVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587
R G + D +S G+++ E T P F+ + I +
Sbjct: 201 IVRGGDSGHDKAVDWWSLGVLMYELLTGASP----FTVDGEKNSQAEISRRILKSEPPYP 256
Query: 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEER 622
+S K + + ++ P++R
Sbjct: 257 QEMSALAKDLI-------------QRLLMKDPKKR 278
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 39.3 bits (90), Expect = 5e-04
Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 12/175 (6%)
Query: 198 SIPDDLCRLAALFQ---LDLGSNKLSGFVP------ASFGNLTNLRSLHLGSNQITSIPS 248
+I D + + +L G +P A+ L + L L +N I I S
Sbjct: 6 TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS 65
Query: 249 TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLF 308
L ++++ L+L N L+ + ++ N + +
Sbjct: 66 -LSGMENLRILSLGRNLIKKIENLD--AVADTLEELWISYNQIASLSGIEKLVNLRVLYM 122
Query: 309 LEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLE 363
D + L L+ L L+ N L + ++ L+
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.0 bits (92), Expect = 6e-04
Identities = 20/185 (10%), Positives = 50/185 (27%), Gaps = 30/185 (16%)
Query: 474 CDMMKHIRHRNLIK---IISSCSNDDFKADFGMAKPLLKEDQSLIQTQTLATIGYMAPEY 530
I H ++ ++ + + +A T ++ T Y +PE
Sbjct: 141 MHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEV 200
Query: 531 GREGRVSTNGDVYSFGIMLIETFTRKKP---------------------------TDEIF 563
D++S ++ E T + +
Sbjct: 201 LLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLR 260
Query: 564 SGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERV 623
+G+ T + + L ++ K+ L + + + + P +R
Sbjct: 261 NGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA 320
Query: 624 NAKEI 628
+A +
Sbjct: 321 DAGGL 325
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (90), Expect = 0.001
Identities = 32/181 (17%), Positives = 59/181 (32%), Gaps = 28/181 (15%)
Query: 472 IECDMMKHIRHRNLIKIISSCSNDDFK---ADFGMAKPLLKEDQSLIQTQTLATIGYMAP 528
I+ I HR+ +K + D DFG+A+ S + T + T Y AP
Sbjct: 132 IKHLHSAGIIHRD-LKPSNIVVKSDCTLKILDFGLAR---TAGTSFMMTPYVVTRYYRAP 187
Query: 529 EYGREGRVSTNGDVYSFGIMLIETFTRKKP---------------------TDEIFSGEM 567
E N D++S G ++ E K + + +
Sbjct: 188 EVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQP 247
Query: 568 TLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627
T++++V + + + S S +L K V P +R++ +
Sbjct: 248 TVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDD 307
Query: 628 I 628
Sbjct: 308 A 308
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 628 | |||
| d1nvra_ | 271 | Cell cycle checkpoint kinase chk1 {Human (Homo sap | 100.0 | |
| d1uwha_ | 276 | B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1yhwa1 | 293 | pak1 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1uu3a_ | 288 | 3-phosphoinositide dependent protein kinase-1 Pdk1 | 100.0 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 100.0 | |
| d1k2pa_ | 258 | Bruton's tyrosine kinase (Btk) {Human (Homo sapien | 100.0 | |
| d2jfla1 | 288 | STE20-like serine/threonine-protein kinase, SLK {H | 100.0 | |
| d1qpca_ | 272 | Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax | 100.0 | |
| d1a06a_ | 307 | Calmodulin-dependent protein kinase {Rat (Rattus n | 100.0 | |
| d1sm2a_ | 263 | Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie | 100.0 | |
| d2java1 | 269 | Serine/threonine-protein kinase Nek2 {Human (Homo | 100.0 | |
| d1jksa_ | 293 | Death-associated protein kinase, Dap {Human (Homo | 100.0 | |
| d1koaa2 | 350 | Twitchin, kinase domain {Caenorhabditis elegans, p | 100.0 | |
| d1u59a_ | 285 | Tyrosine-protein kinase ZAP-70 {Human (Homo sapien | 100.0 | |
| d1xkka_ | 317 | EGF receptor tyrosine kinase, Erbb-1 {Human (Homo | 100.0 | |
| d1u5ra_ | 309 | Serine/threonine protein kinase TAO2 {Rat (Rattus | 100.0 | |
| d1mqba_ | 283 | epha2 receptor tyrosine kinase {Human (Homo sapien | 99.98 | |
| d1koba_ | 352 | Twitchin, kinase domain {California sea hare (Aply | 99.98 | |
| d1opja_ | 287 | Abelsone tyrosine kinase (abl) {Mouse (Mus musculu | 99.98 | |
| d1t4ha_ | 270 | Protein kinase wnk1 {Human (Homo sapiens) [TaxId: | 99.98 | |
| d1xbba_ | 277 | Tyrosine-protein kinase SYK {Human (Homo sapiens) | 99.98 | |
| d1s9ja_ | 322 | Dual specificity mitogen-activated protein kinase | 99.98 | |
| d1jpaa_ | 299 | ephb2 receptor tyrosine kinase {Mouse (Mus musculu | 99.98 | |
| d1fmka3 | 285 | c-src tyrosine kinase {Human (Homo sapiens) [TaxId | 99.97 | |
| d1lufa_ | 301 | Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax | 99.97 | |
| d1rjba_ | 325 | Fl cytokine receptor {Human (Homo sapiens) [TaxId: | 99.97 | |
| d1mp8a_ | 273 | Focal adhesion kinase 1 (fak) {Human (Homo sapiens | 99.97 | |
| d1u46a_ | 273 | Activated CDC42 kinase 1, ACK1 {Human (Homo sapien | 99.97 | |
| d1byga_ | 262 | Carboxyl-terminal src kinase (csk) {Human (Homo sa | 99.97 | |
| d1o6la_ | 337 | Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9 | 99.97 | |
| d1fota_ | 316 | cAMP-dependent PK, catalytic subunit {Baker's yeas | 99.97 | |
| d1o6ya_ | 277 | Mycobacterial protein kinase PknB, catalytic domai | 99.97 | |
| d1xjda_ | 320 | Protein kinase C, theta type {Human (Homo sapiens) | 99.97 | |
| d1rdqe_ | 350 | cAMP-dependent PK, catalytic subunit {Mouse (Mus m | 99.97 | |
| d1tkia_ | 321 | Titin, kinase domain {Human (Homo sapiens) [TaxId: | 99.97 | |
| d2ozaa1 | 335 | MAP kinase activated protein kinase 2, mapkap2 {Hu | 99.97 | |
| d1r0pa_ | 311 | Hepatocyte growth factor receptor, c-MET {Human (H | 99.97 | |
| d1ua2a_ | 299 | Cell division protein kinase 7, CDK7 {Human (Homo | 99.97 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.97 | |
| d1phka_ | 277 | gamma-subunit of glycogen phosphorylase kinase (Ph | 99.97 | |
| d1p4oa_ | 308 | Insulin-like growth factor 1 receptor {Human (Homo | 99.97 | |
| d1t46a_ | 311 | c-KIT receptor {Human (Homo sapiens) [TaxId: 9606] | 99.97 | |
| d1blxa_ | 305 | Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T | 99.97 | |
| d1gz8a_ | 298 | Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T | 99.97 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 99.96 | |
| d1xwsa_ | 273 | Proto-oncogene serine/threonine-protein kinase Pim | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d1ob3a_ | 286 | Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) | 99.96 | |
| d1fvra_ | 309 | Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1ywna1 | 299 | Vascular endothelial growth factor receptor 2 (kdr | 99.96 | |
| d1vjya_ | 303 | Type I TGF-beta receptor R4 {Human (Homo sapiens) | 99.96 | |
| d1fgka_ | 299 | Fibroblast growth factor receptor 1 {Human (Homo s | 99.96 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d3blha1 | 318 | Cell division protein kinase 9, CDK9 {Human (Homo | 99.96 | |
| d1cm8a_ | 346 | MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: | 99.95 | |
| d1unla_ | 292 | Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T | 99.95 | |
| d1ckia_ | 299 | Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax | 99.95 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 99.95 | |
| d1pmea_ | 345 | MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606 | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.95 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1q5ka_ | 350 | Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho | 99.95 | |
| d3bqca1 | 328 | Protein kinase CK2, alpha subunit {Rattus norvegic | 99.95 | |
| d1vzoa_ | 322 | Ribosomal protein S6 kinase alpha 5, Msk1 {Human ( | 99.95 | |
| d1csna_ | 293 | Casein kinase-1, CK1 {Fission yeast (Schizosacchar | 99.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.94 | |
| d2gfsa1 | 348 | MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606] | 99.94 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.92 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.91 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.81 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.8 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.78 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.78 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.77 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.77 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.74 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.74 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.74 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.71 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.69 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.66 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.56 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.53 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.53 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.53 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.45 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.45 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.45 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.43 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.36 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.33 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.29 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.27 | |
| d1zara2 | 191 | Rio2 serine protein kinase C-terminal domain {Arch | 98.77 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.34 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.33 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.34 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.33 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.45 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.14 |
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-35 Score=286.66 Aligned_cols=185 Identities=22% Similarity=0.297 Sum_probs=139.2
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.++|+..+.||+|+||+||+|+. .+|+.||||+++... .+..+.+.+|++++++++|||||++++++.+++..
T Consensus 4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmE 83 (271)
T d1nvra_ 4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 83 (271)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEe
Confidence 35789999999999999999987 679999999997543 23456789999999999999999999987654321
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|+............
T Consensus 84 y~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~ 163 (271)
T d1nvra_ 84 YCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 163 (271)
T ss_dssp CCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBC
T ss_pred ccCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeeccCCcccccc
Confidence 4999999765544333445
Q ss_pred cccccccccCccccccCcc-CcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 518 QTLATIGYMAPEYGREGRV-STNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~~-~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
+.+||+.|||||++.+..| +.++||||+||++|||+||++||............+... ...
T Consensus 164 ~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~------------------~~~ 225 (271)
T d1nvra_ 164 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEK------------------KTY 225 (271)
T ss_dssp CCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTT------------------CTT
T ss_pred ceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcC------------------CCC
Confidence 6789999999999988876 578999999999999999999997643322222221110 001
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..+++++++|+.+||+.||++|||++|+
T Consensus 226 ~~~~~~~s~~~~~li~~~L~~dP~~R~t~~ei 257 (271)
T d1nvra_ 226 LNPWKKIDSAPLALLHKILVENPSARITIPDI 257 (271)
T ss_dssp STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred CCccccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 11223456779999999999999999998764
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.8e-35 Score=285.84 Aligned_cols=186 Identities=25% Similarity=0.366 Sum_probs=134.7
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.++|...+.||+|+||+||+|+.. ..||||+++.. .....+.|.+|++++++++|||||+++|++.++...
T Consensus 7 ~~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~~~~lv~Ey 84 (276)
T d1uwha_ 7 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQW 84 (276)
T ss_dssp TTCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEEC
T ss_pred cccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEeccEEEEEEec
Confidence 567889999999999999999864 35999999653 344567899999999999999999999998764421
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|+............
T Consensus 85 ~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~ 164 (276)
T d1uwha_ 85 CEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE 164 (276)
T ss_dssp CCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSCC-----------
T ss_pred CCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEccccceeeccccCCccccc
Confidence 4999998765433333345
Q ss_pred cccccccccCcccccc---CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 518 QTLATIGYMAPEYGRE---GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~---~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
+..||+.|||||++.+ +.|+.++|||||||++|||+||+.||.+...... ....+..... .+
T Consensus 165 ~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~-~~~~~~~~~~--------------~p 229 (276)
T d1uwha_ 165 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ-IIFMVGRGYL--------------SP 229 (276)
T ss_dssp -CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH-HHHHHHHTSC--------------CC
T ss_pred ccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHH-HHHHHhcCCC--------------CC
Confidence 5689999999999864 3589999999999999999999999976432211 1111111000 00
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..+++++.+++.+||+.||++||||+||
T Consensus 230 ~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i 263 (276)
T d1uwha_ 230 DLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQI 263 (276)
T ss_dssp CGGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred cchhccccchHHHHHHHHHHcCCCHhHCcCHHHH
Confidence 1122344567889999999999999999998764
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-35 Score=286.62 Aligned_cols=182 Identities=22% Similarity=0.256 Sum_probs=142.2
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
++|+..+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|++++++++|||||++++++..++..
T Consensus 20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~ 99 (293)
T d1yhwa1 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL 99 (293)
T ss_dssp TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEec
Confidence 4799999999999999999987 67999999999866555567799999999999999999999987654421
Q ss_pred ----------------------------------------------------------ccccccccccccCccccccccc
Q 037488 499 ----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQTL 520 (628)
Q Consensus 499 ----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~~ 520 (628)
+|||+|+.+.... ......+
T Consensus 100 ~gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~--~~~~~~~ 177 (293)
T d1yhwa1 100 AGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ--SKRSTMV 177 (293)
T ss_dssp TTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTT--CCBCCCC
T ss_pred CCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeecccc--ccccccc
Confidence 4999999764432 2235568
Q ss_pred ccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhch
Q 037488 521 ATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600 (628)
Q Consensus 521 gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (628)
||+.|||||++.++.|+.++||||+||++|||+||++||.+..... .+....... ......+
T Consensus 178 gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~-~~~~~~~~~-----------------~~~~~~~ 239 (293)
T d1yhwa1 178 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR-ALYLIATNG-----------------TPELQNP 239 (293)
T ss_dssp SCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHHC-----------------SCCCSSG
T ss_pred cCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHH-HHHHHHhCC-----------------CCCCCCc
Confidence 9999999999999999999999999999999999999996532111 111111100 0111233
Q ss_pred hhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 601 GQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 601 ~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..++.++++|+.+||+.||++|||+.|+
T Consensus 240 ~~~s~~~~~li~~~L~~dP~~R~s~~ei 267 (293)
T d1yhwa1 240 EKLSAIFRDFLNRCLDMDVEKRGSAKEL 267 (293)
T ss_dssp GGSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred ccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 4567789999999999999999998763
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-35 Score=287.51 Aligned_cols=181 Identities=18% Similarity=0.264 Sum_probs=137.6
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||++++++.+++..
T Consensus 8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm 87 (288)
T d1uu3a_ 8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 87 (288)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence 5799999999999999999987 679999999997532 23456789999999999999999999988765422
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+.+.........
T Consensus 88 Ey~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~ 167 (288)
T d1uu3a_ 88 SYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARA 167 (288)
T ss_dssp CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC--------
T ss_pred EccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceecccCCccccc
Confidence 499999976544333334
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
.+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.+... ....... ....
T Consensus 168 ~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~-----~~~~~~i------------~~~~---- 226 (288)
T d1uu3a_ 168 NSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE-----YLIFQKI------------IKLE---- 226 (288)
T ss_dssp --CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHH------------HTTC----
T ss_pred ccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCH-----HHHHHHH------------HcCC----
Confidence 556899999999999999999999999999999999999999975321 1111111 1111
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...|..+++++++|+.+||+.||++|||++|+
T Consensus 227 ~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e~ 258 (288)
T d1uu3a_ 227 YDFPEKFFPKARDLVEKLLVLDATKRLGCEEM 258 (288)
T ss_dssp CCCCTTCCHHHHHHHHTTSCSSGGGSTTSGGG
T ss_pred CCCCccCCHHHHHHHHHHccCCHhHCcCHHHH
Confidence 11233456779999999999999999999874
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.6e-35 Score=281.33 Aligned_cols=177 Identities=19% Similarity=0.273 Sum_probs=138.7
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|+..+.||+|+||+||+|+. .+|+.||||++.... ....+.+.+|++++++++|||||++++++.+++..
T Consensus 6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm 85 (263)
T d2j4za1 6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL 85 (263)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence 5788999999999999999997 679999999997532 23356789999999999999999999988765422
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+...... .
T Consensus 86 Ey~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~----~ 161 (263)
T d2j4za1 86 EYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR----R 161 (263)
T ss_dssp ECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCC----C
T ss_pred eecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeeecCCCc----c
Confidence 4999998653321 2
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
...+||+.|||||++.+..|+.++||||+||++|||+||+.||.+... ......... . .
T Consensus 162 ~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~-----~~~~~~i~~------------~----~ 220 (263)
T d2j4za1 162 TTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY-----QETYKRISR------------V----E 220 (263)
T ss_dssp EETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHHT------------T----C
T ss_pred cccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCH-----HHHHHHHHc------------C----C
Confidence 456799999999999999999999999999999999999999965321 111111100 0 1
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..|..+++++++|+.+||+.||++|||++|+
T Consensus 221 ~~~p~~~s~~~~~li~~~L~~dp~~R~t~~ei 252 (263)
T d2j4za1 221 FTFPDFVTEGARDLISRLLKHNPSQRPMLREV 252 (263)
T ss_dssp CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCccCCHHHHHHHHHHccCCHhHCcCHHHH
Confidence 12233457789999999999999999998764
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-34 Score=278.27 Aligned_cols=181 Identities=18% Similarity=0.321 Sum_probs=141.3
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
.++|+..+.||+|+||+||+|+.++++.||||+++.... ..+.|.+|++++++++|||||+++|+|.++...
T Consensus 3 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~-~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~ 81 (258)
T d1k2pa_ 3 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM 81 (258)
T ss_dssp CCCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS-CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECC
T ss_pred hHHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC-CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEcc
Confidence 367889999999999999999998888999999976433 346799999999999999999999998764321
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+|+...... ......
T Consensus 82 ~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~-~~~~~~ 160 (258)
T d1k2pa_ 82 ANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-YTSSVG 160 (258)
T ss_dssp TTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSS-CCCCCC
T ss_pred CCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccCCC-ceeecc
Confidence 4999998764432 223345
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccch
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHF 597 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (628)
..||+.|||||++.+..|+.++|||||||++|||+| |+.||......+ ....+.. ..+.
T Consensus 161 ~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~--~~~~i~~------------------~~~~ 220 (258)
T d1k2pa_ 161 SKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE--TAEHIAQ------------------GLRL 220 (258)
T ss_dssp SCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH--HHHHHHT------------------TCCC
T ss_pred cCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHH--HHHHHHh------------------CCCC
Confidence 679999999999999999999999999999999998 899997542211 1111110 0112
Q ss_pred hchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 598 VIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 598 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..|..++.++.+|+.+||+.||++||||+||
T Consensus 221 ~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei 251 (258)
T d1k2pa_ 221 YRPHLASEKVYTIMYSCWHEKADERPTFKIL 251 (258)
T ss_dssp CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHH
T ss_pred CCcccccHHHHHHHHHHccCCHhHCcCHHHH
Confidence 2334566789999999999999999998764
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-34 Score=284.44 Aligned_cols=183 Identities=21% Similarity=0.306 Sum_probs=141.0
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.+.|+..+.||+|+||.||+|+. .+|+.||||+++.......+.+.+|++++++++|||||++++++.+++..
T Consensus 11 ~d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy 90 (288)
T d2jfla1 11 EDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEF 90 (288)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred ccCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEec
Confidence 35688899999999999999987 67999999999876666677899999999999999999999987654321
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||+|+...... ....
T Consensus 91 ~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~--~~~~ 168 (288)
T d2jfla1 91 CAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTI--QRRD 168 (288)
T ss_dssp CTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHH--HHHT
T ss_pred CCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccCCCc--cccc
Confidence 4999998653321 1234
Q ss_pred cccccccccCccccc-----cCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCC
Q 037488 518 QTLATIGYMAPEYGR-----EGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQ 592 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~-----~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (628)
+.+||+.|||||++. +..|+.++||||+||++|||+||+.||.+..+.+ .+...... .
T Consensus 169 ~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~-~~~~i~~~----------------~ 231 (288)
T d2jfla1 169 SFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMR-VLLKIAKS----------------E 231 (288)
T ss_dssp CCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGG-HHHHHHHS----------------C
T ss_pred ccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHH-HHHHHHcC----------------C
Confidence 568999999999984 4568999999999999999999999997643222 11111110 0
Q ss_pred cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 593 EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 593 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+..+++++++|+.+||+.||++|||++|+
T Consensus 232 -~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~el 266 (288)
T d2jfla1 232 -PPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQL 266 (288)
T ss_dssp -CCCCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred -CCCCCccccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 01122334567789999999999999999998763
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.8e-35 Score=283.23 Aligned_cols=182 Identities=23% Similarity=0.331 Sum_probs=138.3
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
.++|+..+.||+|+||.||+|++.+++.||||+++... ...+.|.+|++++++++|||||+++|+|.++...
T Consensus 12 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~iv~Ey~~ 90 (272)
T d1qpca_ 12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYME 90 (272)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCT
T ss_pred HHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCc-CCHHHHHHHHHHHHhCCCCCEeEEEeeeccCCeEEEEEeCC
Confidence 45788889999999999999999888999999997543 2346799999999999999999999998765422
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+|+...... ......
T Consensus 91 ~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~-~~~~~~ 169 (272)
T d1qpca_ 91 NGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-YTAREG 169 (272)
T ss_dssp TCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC-EECCTT
T ss_pred CCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEEccCCc-cccccc
Confidence 4999999764332 223345
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
..||+.|||||++.++.|+.++|||||||++|||+||..|+..... ......... . ..+..
T Consensus 170 ~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~----~~~~~~~i~------------~---~~~~~ 230 (272)
T d1qpca_ 170 AKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMT----NPEVIQNLE------------R---GYRMV 230 (272)
T ss_dssp CCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCC----HHHHHHHHH------------T---TCCCC
T ss_pred cCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCC----HHHHHHHHH------------h---cCCCC
Confidence 6799999999999999999999999999999999996555432211 111111100 0 01122
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.|..++.++.+|+.+||+.||++||||+||
T Consensus 231 ~p~~~~~~l~~li~~cl~~~P~~Rpt~~ei 260 (272)
T d1qpca_ 231 RPDNCPEELYQLMRLCWKERPEDRPTFDYL 260 (272)
T ss_dssp CCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CcccChHHHHHHHHHHcCCCHhHCcCHHHH
Confidence 344567789999999999999999998764
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=8.1e-35 Score=287.83 Aligned_cols=183 Identities=15% Similarity=0.178 Sum_probs=124.7
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.+.|+..+.||+|+||+||+|+. .+|+.||||++.... ....+.+.+|++++++++|||||++++++.+++..
T Consensus 8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE 87 (307)
T d1a06a_ 8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQ 87 (307)
T ss_dssp GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence 46689999999999999999987 579999999997543 22345678999999999999999999987654321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+|+......
T Consensus 88 ~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~--- 164 (307)
T d1a06a_ 88 LVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGS--- 164 (307)
T ss_dssp CCCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC-------------
T ss_pred ccCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCCC---
Confidence 4999998654332
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQED 594 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (628)
...+.+||+.|||||++.+..|+.++||||+||++|||++|++||.+.... ..... .......
T Consensus 165 ~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~-----~~~~~------------i~~~~~~ 227 (307)
T d1a06a_ 165 VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDA-----KLFEQ------------ILKAEYE 227 (307)
T ss_dssp --------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-----HHHHH------------HHTTCCC
T ss_pred eeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHH-----HHHHH------------HhccCCC
Confidence 234568999999999999999999999999999999999999999753211 11111 1111111
Q ss_pred cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 595 KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 595 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+.+..+++++.+|+.+||+.||++|||+.|+
T Consensus 228 ~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~ei 261 (307)
T d1a06a_ 228 FDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQA 261 (307)
T ss_dssp CCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred CCCccccCCCHHHHHHHHHHccCCHhHCcCHHHH
Confidence 1222334567789999999999999999998763
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-34 Score=281.05 Aligned_cols=180 Identities=22% Similarity=0.314 Sum_probs=127.2
Q ss_pred cCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-------- 498 (628)
++|+..+.||+|+||.||+|++.+++.||||+++.... ..+.|.+|++++++++|||||+++|+|..++..
T Consensus 5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~-~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~ 83 (263)
T d1sm2a_ 5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME 83 (263)
T ss_dssp SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcC-cHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecC
Confidence 57888899999999999999998888999999975432 346799999999999999999999998754321
Q ss_pred -----------------------------------------------------------ccccccccccccCcccccccc
Q 037488 499 -----------------------------------------------------------ADFGMAKPLLKEDQSLIQTQT 519 (628)
Q Consensus 499 -----------------------------------------------------------~DFGla~~~~~~~~~~~~~~~ 519 (628)
+|||+|+....... ......
T Consensus 84 ~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~-~~~~~~ 162 (263)
T d1sm2a_ 84 HGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY-TSSTGT 162 (263)
T ss_dssp TCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC-----------------
T ss_pred CCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheeccCCCc-eeecce
Confidence 49999987644322 222345
Q ss_pred cccccccCccccccCccCcccchhhHhHHHHHHhhC-CCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 520 LATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR-KKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 520 ~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
.||+.|||||++.+..|+.++|||||||++|||+|+ ++||... .. ......+... .+..
T Consensus 163 ~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~-~~-~~~~~~i~~~------------------~~~~ 222 (263)
T d1sm2a_ 163 KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR-SN-SEVVEDISTG------------------FRLY 222 (263)
T ss_dssp --CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSC-CH-HHHHHHHHHT------------------CCCC
T ss_pred ecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCC-CH-HHHHHHHHhc------------------CCCC
Confidence 799999999999999999999999999999999995 5555432 11 1111111110 0112
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.|..+++++.+++.+||+.||++||||+||
T Consensus 223 ~p~~~~~~l~~li~~cl~~~p~~Rps~~~i 252 (263)
T d1sm2a_ 223 KPRLASTHVYQIMNHCWKERPEDRPAFSRL 252 (263)
T ss_dssp CCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CccccCHHHHHHHHHHccCCHhHCcCHHHH
Confidence 234567789999999999999999999764
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-34 Score=281.59 Aligned_cols=181 Identities=18% Similarity=0.204 Sum_probs=134.1
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc---c-
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF---K- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---~- 498 (628)
.++|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||++++++.+... .
T Consensus 3 ~edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~i 82 (269)
T d2java1 3 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 82 (269)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEE
T ss_pred chhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEE
Confidence 36799999999999999999987 679999999997542 3445678999999999999999999998753210 0
Q ss_pred -------------------------------------------------------------------------ccccccc
Q 037488 499 -------------------------------------------------------------------------ADFGMAK 505 (628)
Q Consensus 499 -------------------------------------------------------------------------~DFGla~ 505 (628)
+|||+|+
T Consensus 83 vmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~ 162 (269)
T d2java1 83 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR 162 (269)
T ss_dssp EEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHH
T ss_pred EEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeecccee
Confidence 4999999
Q ss_pred cccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceee
Q 037488 506 PLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVV 585 (628)
Q Consensus 506 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (628)
.+.... ....+.+||++|||||++.+..|+.++|||||||++|||+||++||.+... .......
T Consensus 163 ~~~~~~--~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~-----~~~~~~i--------- 226 (269)
T d2java1 163 ILNHDT--SFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ-----KELAGKI--------- 226 (269)
T ss_dssp HC-------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHHHHH---------
T ss_pred ecccCC--CccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCH-----HHHHHHH---------
Confidence 764432 223456899999999999999999999999999999999999999975321 1111110
Q ss_pred cccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 586 DAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..... ...+..+++++.+|+.+||+.||++|||++|+
T Consensus 227 ---~~~~~---~~~~~~~s~~l~~li~~~L~~dp~~Rps~~el 263 (269)
T d2java1 227 ---REGKF---RRIPYRYSDELNEIITRMLNLKDYHRPSVEEI 263 (269)
T ss_dssp ---HHTCC---CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ---HcCCC---CCCCcccCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 00000 11233456789999999999999999998764
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5e-34 Score=281.42 Aligned_cols=183 Identities=16% Similarity=0.204 Sum_probs=141.4
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc------hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY------REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
.+.|...+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||++++++.+++..
T Consensus 9 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~ 88 (293)
T d1jksa_ 9 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV 88 (293)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence 46799999999999999999997 679999999996532 12356789999999999999999999988765422
Q ss_pred ----------------------------------------------------------------------cccccccccc
Q 037488 499 ----------------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 499 ----------------------------------------------------------------------~DFGla~~~~ 508 (628)
+|||+|+...
T Consensus 89 ~iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~ 168 (293)
T d1jksa_ 89 ILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID 168 (293)
T ss_dssp EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECT
T ss_pred EEEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhcC
Confidence 4999998764
Q ss_pred ccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccc
Q 037488 509 KEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAH 588 (628)
Q Consensus 509 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (628)
... ...+..||+.|||||++.+..|+.++||||+||++|||+||+.||.+.... ..... .
T Consensus 169 ~~~---~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~-----~~~~~------------i 228 (293)
T d1jksa_ 169 FGN---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ-----ETLAN------------V 228 (293)
T ss_dssp TSC---BCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-----HHHHH------------H
T ss_pred CCc---cccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHH-----HHHHH------------H
Confidence 332 224568999999999999999999999999999999999999999753211 11111 1
Q ss_pred ccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...........+..++.++++|+.+||+.||++|||++|+
T Consensus 229 ~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~ei 268 (293)
T d1jksa_ 229 SAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDS 268 (293)
T ss_dssp HTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred HhcCCCCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 1111112233344567789999999999999999998763
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Probab=100.00 E-value=2.7e-34 Score=288.95 Aligned_cols=183 Identities=16% Similarity=0.171 Sum_probs=142.1
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.++|+..+.||+|+||.||+|+. .+|+.||||++........+.+.+|++++++++|||||++++++.+++..
T Consensus 25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~ 104 (350)
T d1koaa2 25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 104 (350)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECC
T ss_pred ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence 35799999999999999999987 67999999999776666667899999999999999999999987653321
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+.+.... .
T Consensus 105 ~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~---~ 181 (350)
T d1koaa2 105 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ---S 181 (350)
T ss_dssp CCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTS---C
T ss_pred CCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheeccccc---c
Confidence 4999998764432 2
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
..+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.+... ....... .......
T Consensus 182 ~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~-----~~~~~~i------------~~~~~~~ 244 (350)
T d1koaa2 182 VKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND-----DETLRNV------------KSCDWNM 244 (350)
T ss_dssp EEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHH------------HHTCCCS
T ss_pred cceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCH-----HHHHHHH------------HhCCCCC
Confidence 2456899999999999999999999999999999999999999965321 1111110 0111111
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++++|+.+||+.||++|||++|+
T Consensus 245 ~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~ei 277 (350)
T d1koaa2 245 DDSAFSGISEDGKDFIRKLLLADPNTRMTIHQA 277 (350)
T ss_dssp CCGGGGGCCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred CcccccCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 122233456789999999999999999998763
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-34 Score=279.44 Aligned_cols=182 Identities=19% Similarity=0.373 Sum_probs=138.2
Q ss_pred cCCCcccc-cccCCccEEEEEEec---CCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 427 NGFSENNL-IDRGGIGYVYKRRIH---YGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 427 ~~~~~~~~-ig~G~~g~V~~~~~~---~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
++|...+. ||+|+||+||+|.+. ++..||||+++.. .....+.|.+|++++++++|||||+++|+|..+...
T Consensus 8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~lvm 87 (285)
T d1u59a_ 8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVM 87 (285)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEE
T ss_pred cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccCeEEEEE
Confidence 45556664 999999999999752 3568999999754 344567899999999999999999999998764321
Q ss_pred ---------------------------------------------------------------ccccccccccccCcc-c
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQS-L 514 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~-~ 514 (628)
+|||+|+.+...... .
T Consensus 88 E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~ 167 (285)
T d1u59a_ 88 EMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYT 167 (285)
T ss_dssp ECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEEC
T ss_pred EeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhhcccccccccc
Confidence 499999976543322 2
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
......||+.|||||++.++.|+.++|||||||++|||+| |+.||.+.... .....+..
T Consensus 168 ~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~--~~~~~i~~------------------ 227 (285)
T d1u59a_ 168 ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQ------------------ 227 (285)
T ss_dssp CCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH--HHHHHHHT------------------
T ss_pred cccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHH--HHHHHHHc------------------
Confidence 2234569999999999999999999999999999999998 99999764221 11111110
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..++..|..++.++.+|+.+||+.||++||||.+|
T Consensus 228 ~~~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i 262 (285)
T d1u59a_ 228 GKRMECPPECPPELYALMSDCWIYKWEDRPDFLTV 262 (285)
T ss_dssp TCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHH
Confidence 11223445677889999999999999999998653
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-34 Score=286.25 Aligned_cols=182 Identities=24% Similarity=0.349 Sum_probs=134.6
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCc----EEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGM----EVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~----~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
.+|+..+.||+|+||+||+|++ .+|+ .||||+++.. .....+.|.+|++++++++|||||+++|+|.+++..
T Consensus 9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~v 88 (317)
T d1xkka_ 9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI 88 (317)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEE
T ss_pred HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeeEE
Confidence 4699999999999999999986 4554 5888888643 334467899999999999999999999998765432
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+|+.........
T Consensus 89 ~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~~ 168 (317)
T d1xkka_ 89 TQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 168 (317)
T ss_dssp EECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC--
T ss_pred EEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeeccccceecccccccc
Confidence 4999999765444333
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
......||+.|||||++.++.|+.++|||||||++|||+| |++||++....+ +...+..
T Consensus 169 ~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~--~~~~i~~------------------ 228 (317)
T d1xkka_ 169 HAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE--ISSILEK------------------ 228 (317)
T ss_dssp ------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGG--HHHHHHH------------------
T ss_pred cccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHH--HHHHHHc------------------
Confidence 3344579999999999999999999999999999999999 789987643221 1111111
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+.+.|..++.++.+++.+||+.||++||||.||
T Consensus 229 ~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei 263 (317)
T d1xkka_ 229 GERLPQPPICTIDVYMIMVKCWMIDADSRPKFREL 263 (317)
T ss_dssp TCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHhCCCChhhCcCHHHH
Confidence 01123344567789999999999999999998764
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=5.9e-34 Score=281.65 Aligned_cols=177 Identities=25% Similarity=0.339 Sum_probs=135.4
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
..|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||++++++.+++..
T Consensus 15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~ 94 (309)
T d1u5ra_ 15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 94 (309)
T ss_dssp HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEE
Confidence 3588899999999999999986 679999999997542 34456799999999999999999999988654321
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+.....
T Consensus 95 E~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~------ 168 (309)
T d1u5ra_ 95 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA------ 168 (309)
T ss_dssp ECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB------
T ss_pred EecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccCCC------
Confidence 499999865322
Q ss_pred ccccccccccCcccccc---CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 517 TQTLATIGYMAPEYGRE---GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~---~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
...+||+.|||||++.+ +.|+.++|||||||++|||++|+.||.+..... .+...... ..
T Consensus 169 ~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~-~~~~i~~~----------------~~ 231 (309)
T d1u5ra_ 169 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYHIAQN----------------ES 231 (309)
T ss_dssp CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHS----------------CC
T ss_pred CccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHH-HHHHHHhC----------------CC
Confidence 34689999999999864 469999999999999999999999997532211 01111100 00
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..+++++++|+.+||+.||++|||++|+
T Consensus 232 --~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~el 264 (309)
T d1u5ra_ 232 --PALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVL 264 (309)
T ss_dssp --CCCSCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred --CCCCCCCCCHHHHHHHHHHCcCChhHCcCHHHH
Confidence 011122456779999999999999999998763
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=6e-34 Score=279.15 Aligned_cols=184 Identities=22% Similarity=0.355 Sum_probs=128.8
Q ss_pred hcCCCcccccccCCccEEEEEEecC-C----cEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHY-G----MEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~-~----~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
...|+..+.||+|+||.||+|.+.. + ..||||+++... ......|.+|++++++++|||||+++|+|.+.+..
T Consensus 6 ~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~ 85 (283)
T d1mqba_ 6 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM 85 (283)
T ss_dssp TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceE
Confidence 3567888999999999999998642 2 479999997543 33456789999999999999999999998764421
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+|+.+.....
T Consensus 86 ~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~ 165 (283)
T d1mqba_ 86 IITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPE 165 (283)
T ss_dssp EEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC---------
T ss_pred EEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhhcccCCCc
Confidence 49999997644322
Q ss_pred c-cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 513 S-LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 513 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
. .......||+.|||||++.++.|+.++|||||||++|||+||..|+...... ....... ..
T Consensus 166 ~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~----~~~~~~i---------~~---- 228 (283)
T d1mqba_ 166 ATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN----HEVMKAI---------ND---- 228 (283)
T ss_dssp --------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH----HHHHHHH---------HT----
T ss_pred cceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCH----HHHHHHH---------hc----
Confidence 1 1223456999999999999999999999999999999999976655332211 1111111 00
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+.+.+..++.++.+++.+||+.||++||||.||
T Consensus 229 --~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~ei 263 (283)
T d1mqba_ 229 --GFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADI 263 (283)
T ss_dssp --TCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred --cCCCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHH
Confidence 01123344567789999999999999999998764
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Probab=99.98 E-value=7.3e-34 Score=286.08 Aligned_cols=182 Identities=16% Similarity=0.159 Sum_probs=141.8
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
+.|+..+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|++++++++|||||++++++.+++..
T Consensus 29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~ 108 (352)
T d1koba_ 29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL 108 (352)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence 5699999999999999999987 67999999999876555667789999999999999999999987654321
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+.+.... ..
T Consensus 109 ~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~---~~ 185 (352)
T d1koba_ 109 SGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE---IV 185 (352)
T ss_dssp CCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS---CE
T ss_pred CCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCCC---ce
Confidence 4999999765432 23
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
.+..||+.|||||++.+..|+.++||||+||++|||+||++||.+.... ..... .........
T Consensus 186 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~-----~~~~~------------i~~~~~~~~ 248 (352)
T d1koba_ 186 KVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDL-----ETLQN------------VKRCDWEFD 248 (352)
T ss_dssp EEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH-----HHHHH------------HHHCCCCCC
T ss_pred eeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH-----HHHHH------------HHhCCCCCC
Confidence 4567999999999999999999999999999999999999999653211 11111 011111111
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..+++++.+|+.+||+.||++|||+.|+
T Consensus 249 ~~~~~~~s~~~~~li~~~L~~dp~~R~s~~ei 280 (352)
T d1koba_ 249 EDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDA 280 (352)
T ss_dssp SSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred cccccCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 22334567789999999999999999998763
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.98 E-value=5e-34 Score=279.74 Aligned_cols=182 Identities=24% Similarity=0.359 Sum_probs=138.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
.++|...+.||+|+||+||+|++ .+|+.||||+++.... ..++|.+|++++++++|||||+++|+|.+++..
T Consensus 16 ~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~ 94 (287)
T d1opja_ 16 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 94 (287)
T ss_dssp GGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccc-hHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeec
Confidence 45678889999999999999987 5689999999975432 356799999999999999999999998765422
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+...... ....
T Consensus 95 ~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~-~~~~ 173 (287)
T d1opja_ 95 MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT-YTAH 173 (287)
T ss_dssp CTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSS-SEEE
T ss_pred ccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceeecCCCC-ceee
Confidence 4999999764432 2223
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
....||+.|||||++.++.|+.++|||||||++|||++|..|+....... .....+.. ...
T Consensus 174 ~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~-~~~~~i~~------------------~~~ 234 (287)
T d1opja_ 174 AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS-QVYELLEK------------------DYR 234 (287)
T ss_dssp TTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-HHHHHHHT------------------TCC
T ss_pred ccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHH-HHHHHHhc------------------CCC
Confidence 34568999999999999999999999999999999999776654321111 11111110 011
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..+..++.++++|+.+||+.||++||||+||
T Consensus 235 ~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei 266 (287)
T d1opja_ 235 MERPEGCPEKVYELMRACWQWNPSDRPSFAEI 266 (287)
T ss_dssp CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCccchHHHHHHHHHHcCCCHhHCcCHHHH
Confidence 23344567789999999999999999998764
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2.1e-33 Score=272.23 Aligned_cols=176 Identities=23% Similarity=0.317 Sum_probs=131.1
Q ss_pred CcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCC---C-cc----
Q 037488 430 SENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSND---D-FK---- 498 (628)
Q Consensus 430 ~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~---~-~~---- 498 (628)
...+.||+|+||+||+|+. .+++.||+|++... .....+.|.+|++++++++|||||++++++... + ..
T Consensus 12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivm 91 (270)
T d1t4ha_ 12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 91 (270)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEE
Confidence 4456799999999999987 57899999999754 234466799999999999999999999886431 0 00
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+.....
T Consensus 92 E~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~--- 168 (270)
T d1t4ha_ 92 ELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS--- 168 (270)
T ss_dssp ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTT---
T ss_pred eCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCC---
Confidence 499999854322
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
...+.+||+.|||||++.+ +|+.++||||+||++|||++|+.||.+... .......... ..
T Consensus 169 -~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~----~~~~~~~i~~------------~~- 229 (270)
T d1t4ha_ 169 -FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN----AAQIYRRVTS------------GV- 229 (270)
T ss_dssp -SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS----HHHHHHHHTT------------TC-
T ss_pred -ccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCccc----HHHHHHHHHc------------CC-
Confidence 2245689999999999865 699999999999999999999999965322 1111111110 00
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....+..+++++.+++.+||+.||++|||+.|+
T Consensus 230 -~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~el 263 (270)
T d1t4ha_ 230 -KPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDL 263 (270)
T ss_dssp -CCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred -CCcccCccCCHHHHHHHHHHccCCHhHCcCHHHH
Confidence 0112233456679999999999999999998764
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=6.4e-34 Score=277.47 Aligned_cols=176 Identities=21% Similarity=0.364 Sum_probs=131.4
Q ss_pred cccccCCccEEEEEEec---CCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---------
Q 037488 433 NLIDRGGIGYVYKRRIH---YGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--------- 498 (628)
Q Consensus 433 ~~ig~G~~g~V~~~~~~---~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--------- 498 (628)
+.||+|+||+||+|.+. .++.||||+++.. .....+.|.+|++++++++|||||+++|+|..+...
T Consensus 13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~~~~lvmE~~~~g 92 (277)
T d1xbba_ 13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELG 92 (277)
T ss_dssp EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTE
T ss_pred CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccCCEEEEEEcCCCC
Confidence 47999999999999763 4678999999643 233456799999999999999999999998765422
Q ss_pred --------------------------------------------------------ccccccccccccCcc-cccccccc
Q 037488 499 --------------------------------------------------------ADFGMAKPLLKEDQS-LIQTQTLA 521 (628)
Q Consensus 499 --------------------------------------------------------~DFGla~~~~~~~~~-~~~~~~~g 521 (628)
+|||+|+........ .......|
T Consensus 93 ~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~g 172 (277)
T d1xbba_ 93 PLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 172 (277)
T ss_dssp EHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CC
T ss_pred cHHHHHhhccCCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhhccccccccccccccCC
Confidence 499999976443222 12234569
Q ss_pred cccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchhch
Q 037488 522 TIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIK 600 (628)
Q Consensus 522 t~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (628)
|+.|||||++.++.|+.++|||||||++|||+| |++||.+.... .....+.. ..++..|
T Consensus 173 t~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~--~~~~~i~~------------------~~~~~~p 232 (277)
T d1xbba_ 173 PVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLEK------------------GERMGCP 232 (277)
T ss_dssp CGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHT------------------TCCCCCC
T ss_pred CceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHH--HHHHHHHc------------------CCCCCCC
Confidence 999999999999999999999999999999998 89999753211 11111110 0122344
Q ss_pred hhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 601 GQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 601 ~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..++.++.+|+.+||+.||++||||+||
T Consensus 233 ~~~~~~~~~li~~cl~~dp~~RPs~~~i 260 (277)
T d1xbba_ 233 AGCPREMYDLMNLCWTYDVENRPGFAAV 260 (277)
T ss_dssp TTCCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred cccCHHHHHHHHHHcCCCHhHCcCHHHH
Confidence 5677889999999999999999998763
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=6e-34 Score=284.46 Aligned_cols=133 Identities=20% Similarity=0.318 Sum_probs=112.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
.++|+..+.||+|+||+||+|+. .+|+.||+|+++.. .....+.+.+|++++++++|||||+++++|.+++..
T Consensus 5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmE 84 (322)
T d1s9ja_ 5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 84 (322)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence 56899999999999999999997 67999999999754 233456789999999999999999999988765422
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+..... ..
T Consensus 85 y~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~----~~ 160 (322)
T d1s9ja_ 85 HMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MA 160 (322)
T ss_dssp CCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH----TC
T ss_pred cCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccccCCC----cc
Confidence 499999975432 22
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEI 562 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~ 562 (628)
.+.+||++|||||++.+.+|+.++||||+||++|||++|+.||...
T Consensus 161 ~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~ 206 (322)
T d1s9ja_ 161 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP 206 (322)
T ss_dssp ---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred ccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 4568999999999999999999999999999999999999999753
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.98 E-value=9.3e-34 Score=279.52 Aligned_cols=182 Identities=20% Similarity=0.318 Sum_probs=125.9
Q ss_pred cCCCcccccccCCccEEEEEEec-CC---cEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIH-YG---MEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~-~~---~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
+.|...+.||+|+||+||+|+.. +| ..||||++... .....+.|.+|+++|++++|||||+++|+|..++..
T Consensus 26 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv 105 (299)
T d1jpaa_ 26 SCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMII 105 (299)
T ss_dssp GGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred hhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEE
Confidence 45666789999999999999873 33 36899998653 344567899999999999999999999998764321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+|+.........
T Consensus 106 ~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~ 185 (299)
T d1jpaa_ 106 TEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDP 185 (299)
T ss_dssp EECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-------------
T ss_pred EEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcccceEccCCCCcc
Confidence 4999999764432211
Q ss_pred ---ccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 515 ---IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 515 ---~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
......||+.|||||++.++.|+.++|||||||++|||+| |++||.+.... .....+..
T Consensus 186 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~--~~~~~i~~--------------- 248 (299)
T d1jpaa_ 186 TYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQ--DVINAIEQ--------------- 248 (299)
T ss_dssp ----------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHT---------------
T ss_pred eeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHH--HHHHHHHc---------------
Confidence 1123458999999999999999999999999999999998 89999753221 11111110
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..+.+.+..++.++.+++.+||+.||++||||+||
T Consensus 249 ---~~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei 283 (299)
T d1jpaa_ 249 ---DYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQI 283 (299)
T ss_dssp ---TCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred ---CCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHH
Confidence 01122344677889999999999999999998764
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2e-33 Score=274.47 Aligned_cols=182 Identities=23% Similarity=0.333 Sum_probs=133.0
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------- 498 (628)
.++|+..+.||+|+||.||+|++.+++.||||+++.... ..+.|.+|+.++++++|||||+++|+|.+++..
T Consensus 16 ~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~-~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~lv~Ey~~ 94 (285)
T d1fmka3 16 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMS 94 (285)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCT
T ss_pred HHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccC-CHHHHHHHHHHHHhcccCCEeEEEEEEecCCeEEEEEecC
Confidence 357888999999999999999998788899999975432 346799999999999999999999998765422
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+|+...... ......
T Consensus 95 ~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~-~~~~~~ 173 (285)
T d1fmka3 95 KGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-YTARQG 173 (285)
T ss_dssp TCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC-------------
T ss_pred CCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhccCCC-ceeecc
Confidence 4999998654332 222334
Q ss_pred ccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccchh
Q 037488 519 TLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFV 598 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (628)
..||+.|||||++.++.++.++|||||||++|||+||..|+....... .....+... ...+
T Consensus 174 ~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~-~~~~~i~~~------------------~~~~ 234 (285)
T d1fmka3 174 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR-EVLDQVERG------------------YRMP 234 (285)
T ss_dssp --CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH-HHHHHHHTT------------------CCCC
T ss_pred ccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHH-HHHHHHHhc------------------CCCC
Confidence 579999999999999999999999999999999999766654322111 111111110 1122
Q ss_pred chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 599 IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 599 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+..++.++++++.+||+.||++||||++|
T Consensus 235 ~~~~~~~~l~~li~~cl~~dP~~Rps~~~i 264 (285)
T d1fmka3 235 CPPECPESLHDLMCQCWRKEPEERPTFEYL 264 (285)
T ss_dssp CCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCcccCHHHHHHHHHHcccCHhHCcCHHHH
Confidence 344567889999999999999999998764
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=2.5e-33 Score=277.45 Aligned_cols=187 Identities=22% Similarity=0.337 Sum_probs=140.6
Q ss_pred HHHhhcCCCcccccccCCccEEEEEEec------CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccC
Q 037488 422 LFQATNGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSN 494 (628)
Q Consensus 422 l~~~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 494 (628)
+....++|+..+.||+|+||+||+|+.. +++.||||+++... ....+.|.+|++++++++||||++++++|..
T Consensus 8 ~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~ 87 (301)
T d1lufa_ 8 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV 87 (301)
T ss_dssp TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred ccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeecc
Confidence 3345678999999999999999999863 46789999997543 3346779999999999999999999998865
Q ss_pred CCcc----------------------------------------------------------------------------
Q 037488 495 DDFK---------------------------------------------------------------------------- 498 (628)
Q Consensus 495 ~~~~---------------------------------------------------------------------------- 498 (628)
++..
T Consensus 88 ~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDlK 167 (301)
T d1lufa_ 88 GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLA 167 (301)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred CCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEEc
Confidence 3211
Q ss_pred --------------ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCC-CCCCccc
Q 037488 499 --------------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRK-KPTDEIF 563 (628)
Q Consensus 499 --------------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~-~p~~~~~ 563 (628)
+|||+|+...........++..||+.|||||++.+..|+.++|||||||++|||++|. +||.+..
T Consensus 168 p~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~ 247 (301)
T d1lufa_ 168 TRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA 247 (301)
T ss_dssp GGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred ccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCC
Confidence 4999998765544444445667999999999999999999999999999999999985 6775432
Q ss_pred CCCccHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 564 SGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .+....... + ..+..|..+++++++|+.+||+.||++||||.||
T Consensus 248 ~-----~e~~~~v~~------------~---~~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev 292 (301)
T d1lufa_ 248 H-----EEVIYYVRD------------G---NILACPENCPLELYNLMRLCWSKLPADRPSFCSI 292 (301)
T ss_dssp H-----HHHHHHHHT------------T---CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred H-----HHHHHHHHc------------C---CCCCCCccchHHHHHHHHHHcCCChhHCcCHHHH
Confidence 1 111111100 0 0122344567789999999999999999999764
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.8e-33 Score=278.98 Aligned_cols=184 Identities=19% Similarity=0.336 Sum_probs=137.8
Q ss_pred hcCCCcccccccCCccEEEEEEec-C-----CcEEEEEEeecc-chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH-Y-----GMEVAVKVFDLQ-YREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDF 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~-~-----~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 497 (628)
.++|+..+.||+|+||+||+|+.. . ...||||++... .......+.+|+.++.++ +|||||+++++|.+.+.
T Consensus 36 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~ 115 (325)
T d1rjba_ 36 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGP 115 (325)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCe
Confidence 357888899999999999999863 2 246999998643 333456789999999998 89999999998754321
Q ss_pred c-------------------------------------------------------------------------------
Q 037488 498 K------------------------------------------------------------------------------- 498 (628)
Q Consensus 498 ~------------------------------------------------------------------------------- 498 (628)
.
T Consensus 116 ~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlKp~Ni 195 (325)
T d1rjba_ 116 IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNV 195 (325)
T ss_dssp CEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGE
T ss_pred EEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCchhcc
Confidence 0
Q ss_pred ----------ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCc
Q 037488 499 ----------ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEM 567 (628)
Q Consensus 499 ----------~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~ 567 (628)
+|||+|+............+..||+.|||||++.++.|+.++|||||||++|||+| |++||.+.....
T Consensus 196 ll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~- 274 (325)
T d1rjba_ 196 LVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDA- 274 (325)
T ss_dssp EEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH-
T ss_pred ccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCHHH-
Confidence 49999997655443333445679999999999999999999999999999999998 899997643221
Q ss_pred cHHHHHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 568 TLKHWVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+...+... .++..|..++.++++||.+||+.||++||||+||
T Consensus 275 ~~~~~~~~~------------------~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei 317 (325)
T d1rjba_ 275 NFYKLIQNG------------------FKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNL 317 (325)
T ss_dssp HHHHHHHTT------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHHHHHhcC------------------CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 122221110 1123345567889999999999999999999764
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=8e-33 Score=269.92 Aligned_cols=182 Identities=20% Similarity=0.320 Sum_probs=128.4
Q ss_pred hcCCCcccccccCCccEEEEEEec----CCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH----YGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 498 (628)
.++|+..+.||+|+||.||+|++. .+..||||+++... ....+.|.+|++++++++|||||+++|+|.++...
T Consensus 6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~iv 85 (273)
T d1mp8a_ 6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWII 85 (273)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEE
T ss_pred HHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCeEEEE
Confidence 457888999999999999999863 24579999986533 34456799999999999999999999998754321
Q ss_pred ----------------------------------------------------------------ccccccccccccCccc
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQSL 514 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~~ 514 (628)
+|||+|+...... ..
T Consensus 86 ~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~-~~ 164 (273)
T d1mp8a_ 86 MELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST-YY 164 (273)
T ss_dssp EECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC--------------
T ss_pred EEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhheeccCCc-ce
Confidence 4999998754332 22
Q ss_pred ccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCc
Q 037488 515 IQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQE 593 (628)
Q Consensus 515 ~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (628)
......||++|||||++.++.|+.++|||||||++|||+| |++||.+....+ ....+.. +
T Consensus 165 ~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~--~~~~i~~---------------~-- 225 (273)
T d1mp8a_ 165 KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND--VIGRIEN---------------G-- 225 (273)
T ss_dssp ------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHHHT---------------T--
T ss_pred eccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHH--HHHHHHc---------------C--
Confidence 2345579999999999999999999999999999999998 899997643221 1111110 0
Q ss_pred ccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 594 DKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 594 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+.+..++.++.+|+.+||+.||++||||.||
T Consensus 226 -~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei 259 (273)
T d1mp8a_ 226 -ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL 259 (273)
T ss_dssp -CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred -CCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHH
Confidence 1123445677889999999999999999998764
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.9e-33 Score=272.14 Aligned_cols=183 Identities=24% Similarity=0.415 Sum_probs=128.9
Q ss_pred cCCCcccccccCCccEEEEEEe--cC--CcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI--HY--GMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~--~~--~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 498 (628)
++|+..+.||+|+||.||+|+. .+ +..||||+++.. ..+..+.|.+|++++++++|||||+++|+|.++...
T Consensus 8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~~~~l 87 (273)
T d1u46a_ 8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKM 87 (273)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEE
T ss_pred HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeecchhe
Confidence 5688899999999999999985 22 347899998653 234467899999999999999999999998764321
Q ss_pred -----------------------------------------------------------------ccccccccccccCcc
Q 037488 499 -----------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 499 -----------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
+|||+|+........
T Consensus 88 v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~ 167 (273)
T d1u46a_ 88 VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH 167 (273)
T ss_dssp EEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCE
T ss_pred eeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhhhcccCCCc
Confidence 499999976443322
Q ss_pred -cccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 514 -LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 514 -~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
.......||.+|||||++.+..|+.++|||||||++|||+| |+.||.+.... .....+..
T Consensus 168 ~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~--~~~~~i~~---------------- 229 (273)
T d1u46a_ 168 YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS--QILHKIDK---------------- 229 (273)
T ss_dssp EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHT----------------
T ss_pred ceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHH--HHHHHHHh----------------
Confidence 22234468999999999999999999999999999999998 89999653211 11111110
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+++.+..++.++.+++.+||+.||++||||.||
T Consensus 230 -~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei 265 (273)
T d1u46a_ 230 -EGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVAL 265 (273)
T ss_dssp -SCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred -CCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHH
Confidence 011223344567789999999999999999998764
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=8.1e-33 Score=266.86 Aligned_cols=175 Identities=25% Similarity=0.369 Sum_probs=128.2
Q ss_pred hcCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCC--cc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD--FK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~----- 498 (628)
.++|+..+.||+|+||.||+|++. |+.||||+++... ..+.|.+|++++++++|||||+++|+|.+++ ..
T Consensus 6 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~vAvK~i~~~~--~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey 82 (262)
T d1byga_ 6 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 82 (262)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred HHHeEEeEEEecCCCeEEEEEEEC-CeEEEEEEECcHH--HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEec
Confidence 356777889999999999999985 7889999997543 3467899999999999999999999985432 11
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+++..... .
T Consensus 83 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~-----~ 157 (262)
T d1byga_ 83 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST-----Q 157 (262)
T ss_dssp CTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC-------------
T ss_pred cCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeecccccceecCCC-----C
Confidence 399999865332 2
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
....+|..|||||++.++.|+.++|||||||++|||+| |++||...... .....+. ...
T Consensus 158 ~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~--~~~~~i~------------------~~~ 217 (262)
T d1byga_ 158 DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DVVPRVE------------------KGY 217 (262)
T ss_dssp ----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG--GHHHHHT------------------TTC
T ss_pred ccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHH--HHHHHHH------------------cCC
Confidence 34568999999999999999999999999999999998 68887653221 1111111 011
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+++.+..+++++.+++.+||+.||++||||.||
T Consensus 218 ~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l 250 (262)
T d1byga_ 218 KMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQL 250 (262)
T ss_dssp CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCCccCCHHHHHHHHHHcccCHhHCcCHHHH
Confidence 233444567789999999999999999998764
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.5e-32 Score=272.76 Aligned_cols=177 Identities=18% Similarity=0.248 Sum_probs=138.9
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc---
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 498 (628)
.++|+..+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|+++|++++|||||++++++.+++..
T Consensus 4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv 83 (337)
T d1o6la_ 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccc
Confidence 46799999999999999999987 689999999997542 23457789999999999999999999988765432
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+....... .
T Consensus 84 ~ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~--~ 161 (337)
T d1o6la_ 84 MEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA--T 161 (337)
T ss_dssp EECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTC--C
T ss_pred eeccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecccccccccCCc--c
Confidence 49999997543322 2
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
..+.+||+.|||||++.+..|+.++||||+||++|||++|++||.+... ....... ...
T Consensus 162 ~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~-----~~~~~~i------------~~~---- 220 (337)
T d1o6la_ 162 MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----ERLFELI------------LME---- 220 (337)
T ss_dssp BCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHH------------HHC----
T ss_pred cccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCH-----HHHHHHH------------hcC----
Confidence 3557899999999999999999999999999999999999999975321 1111110 111
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
....|..+++++++|+.+||++||++||+.
T Consensus 221 ~~~~p~~~s~~~~dli~~~L~~dP~~R~~~ 250 (337)
T d1o6la_ 221 EIRFPRTLSPEAKSLLAGLLKKDPKQRLGG 250 (337)
T ss_dssp CCCCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred CCCCCccCCHHHHHHHHhhccCCchhhccc
Confidence 112334567789999999999999999963
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.5e-32 Score=272.67 Aligned_cols=171 Identities=20% Similarity=0.220 Sum_probs=134.7
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+.+++.++|||||++++++.+++..
T Consensus 4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm 83 (316)
T d1fota_ 4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM 83 (316)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence 5689999999999999999997 679999999997532 33457789999999999999999999987664422
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+..... .
T Consensus 84 E~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~-----~ 158 (316)
T d1fota_ 84 DYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV-----T 158 (316)
T ss_dssp CCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC-----B
T ss_pred eecCCccccccccccccccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceEeccc-----c
Confidence 499999975432 2
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
.+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.+... ...... .....
T Consensus 159 ~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~-----~~~~~~------------i~~~~---- 217 (316)
T d1fota_ 159 YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT-----MKTYEK------------ILNAE---- 217 (316)
T ss_dssp CCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHH------------HHHCC----
T ss_pred ccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCH-----HHHHHH------------HHcCC----
Confidence 456899999999999999999999999999999999999999975321 111111 11111
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERV 623 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rp 623 (628)
...|...++++.+++.+||+.||++||
T Consensus 218 ~~~p~~~s~~~~~li~~~L~~dp~~R~ 244 (316)
T d1fota_ 218 LRFPPFFNEDVKDLLSRLITRDLSQRL 244 (316)
T ss_dssp CCCCTTSCHHHHHHHHHHTCSCTTTCT
T ss_pred CCCCCCCCHHHHHHHHHHhhhCHHhcc
Confidence 112334567799999999999999997
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.97 E-value=2e-32 Score=267.77 Aligned_cols=185 Identities=20% Similarity=0.277 Sum_probs=130.4
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc---chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ---YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF---- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 497 (628)
.++|+..+.||+|+||+||+|+. .+|+.||||+++.. .....+.|.+|+++++.++|||||++++++...+.
T Consensus 6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~ 85 (277)
T d1o6ya_ 6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 85 (277)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence 46799999999999999999987 67999999999753 23445679999999999999999999998754321
Q ss_pred --c----------------------------------------------------------------ccccccccccccC
Q 037488 498 --K----------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 498 --~----------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
. +|||.++......
T Consensus 86 ~~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~ 165 (277)
T d1o6ya_ 86 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSG 165 (277)
T ss_dssp EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEECC---
T ss_pred EEEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhhhhhcccc
Confidence 0 3999887653322
Q ss_pred c-ccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeeccccc
Q 037488 512 Q-SLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLL 590 (628)
Q Consensus 512 ~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (628)
. .....+.+||+.|||||++.+..|+.++||||+||++|||+||++||.+..+. ...... +.
T Consensus 166 ~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~-----~~~~~~------------~~ 228 (277)
T d1o6ya_ 166 NSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPV-----SVAYQH------------VR 228 (277)
T ss_dssp -------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH-----HHHHHH------------HH
T ss_pred ccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHH-----HHHHHH------------Hh
Confidence 1 12334567999999999999999999999999999999999999999753211 111110 00
Q ss_pred CCcccchhchhhhHHHHHHHhhcccCCCcccCC-CCCC
Q 037488 591 SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERV-NAKE 627 (628)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-t~~e 627 (628)
.........+..+++++.+++.+||+.||++|| |+++
T Consensus 229 ~~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~ 266 (277)
T d1o6ya_ 229 EDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAE 266 (277)
T ss_dssp CCCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHH
T ss_pred cCCCCCchhccCCCHHHHHHHHHHccCCHhHCHhHHHH
Confidence 111111122334677899999999999999999 5554
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.1e-32 Score=269.26 Aligned_cols=177 Identities=19% Similarity=0.266 Sum_probs=135.8
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhh-cccCCCcceeeeeccCCCcc---
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMK-HIRHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~-~l~h~niv~l~~~~~~~~~~--- 498 (628)
++|...+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+.++. .++|||||++++++.+++..
T Consensus 2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv 81 (320)
T d1xjda_ 2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV 81 (320)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence 5789999999999999999987 679999999997532 233456777877765 68999999999988765432
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+...... ..
T Consensus 82 mEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~--~~ 159 (320)
T d1xjda_ 82 MEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGD--AK 159 (320)
T ss_dssp EECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT--CC
T ss_pred EeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhhccccc--cc
Confidence 4999998654332 22
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
....+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.... ...... ...
T Consensus 160 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~-----~~~~~i------------~~~---- 218 (320)
T d1xjda_ 160 TNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE-----ELFHSI------------RMD---- 218 (320)
T ss_dssp BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-----HHHHHH------------HHC----
T ss_pred ccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHH-----HHHHHH------------HcC----
Confidence 34568999999999999999999999999999999999999999753211 111110 001
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
.+..|..+++++++|+.+||+.||++|||+.
T Consensus 219 ~~~~p~~~s~~~~dli~~~L~~dP~~R~s~~ 249 (320)
T d1xjda_ 219 NPFYPRWLEKEAKDLLVKLFVREPEKRLGVR 249 (320)
T ss_dssp CCCCCTTSCHHHHHHHHHHSCSSGGGSBTTB
T ss_pred CCCCCccCCHHHHHHHHHhcccCCCCCcCHH
Confidence 1122334567799999999999999999985
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=2.9e-32 Score=274.29 Aligned_cols=171 Identities=17% Similarity=0.156 Sum_probs=134.0
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
++|+..+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|+++++.++|||||++++++......
T Consensus 41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~ 120 (350)
T d1rdqe_ 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence 5799999999999999999987 679999999997532 23356789999999999999999999987654321
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+.+... .
T Consensus 121 e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~-----~ 195 (350)
T d1rdqe_ 121 EYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR-----T 195 (350)
T ss_dssp ECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC-----B
T ss_pred ccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeeecccc-----c
Confidence 499999976432 2
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
.+.+||+.|||||++.+..|+.++||||+||++|||+||++||.+... ....... ... .
T Consensus 196 ~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~-----~~~~~~i------------~~~----~ 254 (350)
T d1rdqe_ 196 WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP-----IQIYEKI------------VSG----K 254 (350)
T ss_dssp CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHH------------HHC----C
T ss_pred ccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCH-----HHHHHHH------------hcC----C
Confidence 456899999999999999999999999999999999999999965311 1111110 000 1
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERV 623 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rp 623 (628)
...+..+++++.+++.+||+.||++|+
T Consensus 255 ~~~p~~~s~~~~~li~~~L~~dP~kR~ 281 (350)
T d1rdqe_ 255 VRFPSHFSSDLKDLLRNLLQVDLTKRF 281 (350)
T ss_dssp CCCCTTCCHHHHHHHHHHSCSCTTTCT
T ss_pred CCCCccCCHHHHHHHHHHhhhCHHhcc
Confidence 122334567799999999999999995
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.1e-32 Score=270.30 Aligned_cols=182 Identities=17% Similarity=0.172 Sum_probs=139.3
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
-++|...+.||+|+||+||+|.. .+|+.||||+++.... ....+.+|+++|+.++|||||++++++.+++..
T Consensus 4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~-~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~ 82 (321)
T d1tkia_ 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT-DQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTH-HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcc-cHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEec
Confidence 36789999999999999999987 6799999999976543 335688999999999999999999987543211
Q ss_pred ---------------------------------------------------------------ccccccccccccCcccc
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQSLI 515 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~~~ 515 (628)
+|||+|+...... .
T Consensus 83 ~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~---~ 159 (321)
T d1tkia_ 83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD---N 159 (321)
T ss_dssp CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC---E
T ss_pred CCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhccccCC---c
Confidence 4999998764332 2
Q ss_pred cccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCccc
Q 037488 516 QTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDK 595 (628)
Q Consensus 516 ~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (628)
.....||+.|+|||...+..|+.++||||+||++|||++|+.||...... ..... ........
T Consensus 160 ~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~-----~~~~~------------i~~~~~~~ 222 (321)
T d1tkia_ 160 FRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ-----QIIEN------------IMNAEYTF 222 (321)
T ss_dssp EEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHH-----HHHHH------------HHHTCCCC
T ss_pred ccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHH-----HHHHH------------HHhCCCCC
Confidence 24567999999999999999999999999999999999999999753211 11111 11111111
Q ss_pred chhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 596 HFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 596 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....+..++.++++|+.+||+.||++|||++|+
T Consensus 223 ~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~ei 255 (321)
T d1tkia_ 223 DEEAFKEISIEAMDFVDRLLVKERKSRMTASEA 255 (321)
T ss_dssp CHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred ChhhccCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 222334567789999999999999999998763
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1e-31 Score=268.89 Aligned_cols=182 Identities=16% Similarity=0.139 Sum_probs=133.4
Q ss_pred hcCCCccc-ccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcc-cCCCcceeeeeccCC----Ccc
Q 037488 426 TNGFSENN-LIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHI-RHRNLIKIISSCSND----DFK 498 (628)
Q Consensus 426 ~~~~~~~~-~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~----~~~ 498 (628)
.++|.+.. .||+|+||+||+|+. .+|+.||||+++.. ..+.+|++++.++ +|||||++++++.+. ...
T Consensus 10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~-----~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~ 84 (335)
T d2ozaa1 10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 84 (335)
T ss_dssp GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc-----HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEE
Confidence 45788764 699999999999987 67999999999642 3467899987655 899999999876421 000
Q ss_pred -----------------------------------------------------------------------ccccccccc
Q 037488 499 -----------------------------------------------------------------------ADFGMAKPL 507 (628)
Q Consensus 499 -----------------------------------------------------------------------~DFGla~~~ 507 (628)
+|||+|+..
T Consensus 85 ~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~ 164 (335)
T d2ozaa1 85 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET 164 (335)
T ss_dssp EEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEEC
T ss_pred EEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCccccccccccccccccccccccccccceeeec
Confidence 499999876
Q ss_pred cccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecc
Q 037488 508 LKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587 (628)
Q Consensus 508 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (628)
..... ....+||++|||||++.+..|+.++||||+||++|||+||++||.+...... .. .+...
T Consensus 165 ~~~~~---~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~-~~------------~~~~~ 228 (335)
T d2ozaa1 165 TSHNS---LTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI-SP------------GMKTR 228 (335)
T ss_dssp CCCCC---CCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC---------------------C
T ss_pred cCCCc---cccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHH-HH------------HHHHH
Confidence 44322 2456899999999999999999999999999999999999999975322110 00 01111
Q ss_pred cccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
............+..+++++++|+.+||+.||++|||+.|+
T Consensus 229 i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~ei 269 (335)
T d2ozaa1 229 IRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEF 269 (335)
T ss_dssp CCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred HhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 11112222223344567889999999999999999998763
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.3e-31 Score=265.31 Aligned_cols=178 Identities=24% Similarity=0.390 Sum_probs=130.9
Q ss_pred ccccccCCccEEEEEEecC----CcEEEEEEeec-cchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-c-------
Q 037488 432 NNLIDRGGIGYVYKRRIHY----GMEVAVKVFDL-QYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF-K------- 498 (628)
Q Consensus 432 ~~~ig~G~~g~V~~~~~~~----~~~vavK~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-~------- 498 (628)
.++||+|+||+||+|++.. ...||||+++. ......+.|.+|++++++++|||||+++|+|...+. .
T Consensus 32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~ 111 (311)
T d1r0pa_ 32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM 111 (311)
T ss_dssp EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence 3679999999999998732 23689999974 345566889999999999999999999998754321 0
Q ss_pred ------------------------------------------------------------ccccccccccccCcc--ccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQS--LIQ 516 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~--~~~ 516 (628)
+|||+++........ ...
T Consensus 112 ~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~ 191 (311)
T d1r0pa_ 112 KHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNK 191 (311)
T ss_dssp TTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCT
T ss_pred ecCchhhhhccccccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhccccccccceec
Confidence 499999976443221 122
Q ss_pred ccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccCCcccc
Q 037488 517 TQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLSQEDKH 596 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (628)
....||+.|+|||++.++.|+.++|||||||++|||+||+.||........ ...++.. + .+
T Consensus 192 ~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~-~~~~i~~---------------g---~~ 252 (311)
T d1r0pa_ 192 TGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD-ITVYLLQ---------------G---RR 252 (311)
T ss_dssp TCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC-------CHHHHHT---------------T---CC
T ss_pred ccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHH-HHHHHHc---------------C---CC
Confidence 345699999999999999999999999999999999998887754322111 1111110 1 11
Q ss_pred hhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 597 FVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 597 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+..|..++.++.+++.+||+.||++||||.||
T Consensus 253 ~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei 284 (311)
T d1r0pa_ 253 LLQPEYCPDPLYEVMLKCWHPKAEMRPSFSEL 284 (311)
T ss_dssp CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCcccCcHHHHHHHHHHcCCCHhHCcCHHHH
Confidence 22334567789999999999999999999764
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.8e-31 Score=264.17 Aligned_cols=195 Identities=20% Similarity=0.197 Sum_probs=131.9
Q ss_pred cccccccCCccEEEEEEe-cCCcEEEEEEeeccchh-----HHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 431 ENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYRE-----AFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 431 ~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~-----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
..+.||+|+||+||+|+. .+|+.||||+++..... ..+.+.+|++++++++|||||++++++..++..
T Consensus 2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~ 81 (299)
T d1ua2a_ 2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF 81 (299)
T ss_dssp EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhh
Confidence 357899999999999997 67999999999653221 234688999999999999999999998765432
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+|+....... ...+
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~--~~~~ 159 (299)
T d1ua2a_ 82 METDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR--AYTH 159 (299)
T ss_dssp CSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCC--CCCC
T ss_pred hcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccccCCCcc--cccc
Confidence 49999987644322 2345
Q ss_pred ccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC---ccceee---cccccC
Q 037488 519 TLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI---SVMKVV---DAHLLS 591 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~ 591 (628)
.+||+.|||||++.++ .|+.++||||+||++|||+||++||.+....+ .+.......... .+.... ......
T Consensus 160 ~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (299)
T d1ua2a_ 160 QVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLD-QLTRIFETLGTPTEEQWPDMCSLPDYVTFK 238 (299)
T ss_dssp SCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCTTTSSSTTSSTTCCCCC
T ss_pred eecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHH-HHHHHHHhcCCCChhhccchhccchhhhhc
Confidence 6899999999998754 58999999999999999999999997532211 111121111110 000000 000000
Q ss_pred Ccc--cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 QED--KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~~~--~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
... .........++++++|+.+||+.||++|||++|+
T Consensus 239 ~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~ 277 (299)
T d1ua2a_ 239 SFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQA 277 (299)
T ss_dssp CCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHH
T ss_pred cCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 000 0011122456789999999999999999998763
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.97 E-value=5.1e-30 Score=255.98 Aligned_cols=243 Identities=37% Similarity=0.618 Sum_probs=214.8
Q ss_pred cCCccccCCCCCCEEEccC-CcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCcc
Q 037488 150 GIPEEISNLTNLIAIYLGG-NKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFG 228 (628)
Q Consensus 150 ~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 228 (628)
.+|+.++++++|++|+|++ |.+.|.+|.+++++++|++|+|++|++.+..+..+..+.+|+.+++++|.+.+..|..+.
T Consensus 67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~ 146 (313)
T d1ogqa_ 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred CCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhc
Confidence 3677888899999999986 788888898999999999999999999988888888899999999999998888888999
Q ss_pred CCCCCcEEEccCCcCC-cCCCCccCCCCC-cEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCE
Q 037488 229 NLTNLRSLHLGSNQIT-SIPSTLLNLKDI-LYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQY 306 (628)
Q Consensus 229 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 306 (628)
.+++|+.+++++|.+. .+|..+..+..+ +.+++++|++++..|..+..+..+ .++++.+.+.+.+|..+..+++++.
T Consensus 147 ~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~ 225 (313)
T d1ogqa_ 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSE
T ss_pred cCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 9999999999999987 478888877776 889999999998888888887654 6999999999999999999999999
Q ss_pred EeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCCCCCcccccccccccCCCcc
Q 037488 307 LFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIPREGSFRNFLAESFKGNELL 386 (628)
Q Consensus 307 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~~ 386 (628)
+++++|.+.+.+| .++.+++|+.|++++|++++.+|..+.++++|+.|+|++|+++|.+|+...+..+....+.+|+.+
T Consensus 226 l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l 304 (313)
T d1ogqa_ 226 IHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred ccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccc
Confidence 9999999987655 588899999999999999999999999999999999999999999998777888888899999999
Q ss_pred cCCCCCCCCCc
Q 037488 387 CGMPNLQVPPC 397 (628)
Q Consensus 387 ~~~~~~~~~~~ 397 (628)
||.| +|+|
T Consensus 305 ~g~p---lp~c 312 (313)
T d1ogqa_ 305 CGSP---LPAC 312 (313)
T ss_dssp ESTT---SSCC
T ss_pred cCCC---CCCC
Confidence 9975 3566
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.97 E-value=2.1e-31 Score=259.03 Aligned_cols=182 Identities=20% Similarity=0.223 Sum_probs=137.5
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---------hhHHHHHHHHHHHhhccc-CCCcceeeeeccCC
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---------REAFKNFDIECDMMKHIR-HRNLIKIISSCSND 495 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---------~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~ 495 (628)
++|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+.++++++ |||||++++++.++
T Consensus 3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 82 (277)
T d1phka_ 3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN 82 (277)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence 5789999999999999999987 679999999996532 122456889999999997 99999999988765
Q ss_pred Ccc------------------------------------------------------------------ccccccccccc
Q 037488 496 DFK------------------------------------------------------------------ADFGMAKPLLK 509 (628)
Q Consensus 496 ~~~------------------------------------------------------------------~DFGla~~~~~ 509 (628)
+.. +|||+|+....
T Consensus 83 ~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~ 162 (277)
T d1phka_ 83 TFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDP 162 (277)
T ss_dssp SEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCT
T ss_pred cceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccchheeEccC
Confidence 432 49999997644
Q ss_pred cCcccccccccccccccCcccccc------CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccce
Q 037488 510 EDQSLIQTQTLATIGYMAPEYGRE------GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMK 583 (628)
Q Consensus 510 ~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (628)
.. .....+||+.|+|||++.+ ..|+.++||||+||++|||+||+.||.+..... ......
T Consensus 163 ~~---~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~-~~~~i~---------- 228 (277)
T d1phka_ 163 GE---KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQML-MLRMIM---------- 228 (277)
T ss_dssp TC---CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHH----------
T ss_pred CC---ceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHH-HHHHHH----------
Confidence 32 2345689999999999864 347889999999999999999999997532111 111111
Q ss_pred eecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 584 VVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.............+++++++|+.+||+.||++|||+.||
T Consensus 229 ------~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~ei 267 (277)
T d1phka_ 229 ------SGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEA 267 (277)
T ss_dssp ------HTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred ------hCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 111111122334567889999999999999999998764
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.4e-31 Score=265.35 Aligned_cols=183 Identities=22% Similarity=0.351 Sum_probs=139.3
Q ss_pred hcCCCcccccccCCccEEEEEEec------CCcEEEEEEeecc-chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQ-YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
.++|...+.||+|+||.||+|.+. +++.||||+++.. .......|.+|++++++++|||||+++|+|..++..
T Consensus 19 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~ 98 (308)
T d1p4oa_ 19 REKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPT 98 (308)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSC
T ss_pred HHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCce
Confidence 367778899999999999999763 3678999999753 334456789999999999999999999988654321
Q ss_pred ----------------------------------------------------------------------------cccc
Q 037488 499 ----------------------------------------------------------------------------ADFG 502 (628)
Q Consensus 499 ----------------------------------------------------------------------------~DFG 502 (628)
+|||
T Consensus 99 ~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~~~Kl~DFG 178 (308)
T d1p4oa_ 99 LVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFG 178 (308)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEECCTT
T ss_pred eEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCceEEEeecc
Confidence 4999
Q ss_pred ccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCC-CCCCcccCCCccHHHHHHhhcCCcc
Q 037488 503 MAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRK-KPTDEIFSGEMTLKHWVNDLLPISV 581 (628)
Q Consensus 503 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~-~p~~~~~~~~~~~~~~~~~~~~~~~ 581 (628)
+|+.+.............||+.|||||.+.++.|+.++|||||||++|||+||+ +||.+.. ..++.....
T Consensus 179 la~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~-----~~~~~~~i~---- 249 (308)
T d1p4oa_ 179 MTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS-----NEQVLRFVM---- 249 (308)
T ss_dssp CCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC-----HHHHHHHHH----
T ss_pred cceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCC-----HHHHHHHHH----
Confidence 999765544333345557999999999999999999999999999999999984 6775421 112111110
Q ss_pred ceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 582 MKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+. .....+..++.++++++.+||+.||++||||.||
T Consensus 250 ----~~-------~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~i 285 (308)
T d1p4oa_ 250 ----EG-------GLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEI 285 (308)
T ss_dssp ----TT-------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ----hC-------CCCCCcccchHHHHHHHHHHcCCChhHCcCHHHH
Confidence 10 1122344567789999999999999999998764
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.8e-31 Score=263.77 Aligned_cols=184 Identities=20% Similarity=0.345 Sum_probs=139.2
Q ss_pred hcCCCcccccccCCccEEEEEEe------cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI------HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDF 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 497 (628)
.++|+..+.||+|+||.||+|++ .+++.||||+++... ......|.+|+.+++++ +|||||+++|+|.+++.
T Consensus 22 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~ 101 (311)
T d1t46a_ 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP 101 (311)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCE
Confidence 46778889999999999999975 346789999997543 34556789999999999 69999999999875432
Q ss_pred c-------------------------------------------------------------------------------
Q 037488 498 K------------------------------------------------------------------------------- 498 (628)
Q Consensus 498 ~------------------------------------------------------------------------------- 498 (628)
.
T Consensus 102 ~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NIl~~~~ 181 (311)
T d1t46a_ 102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHG 181 (311)
T ss_dssp CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEETT
T ss_pred EEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeeccccccccccccc
Confidence 1
Q ss_pred -----ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHH
Q 037488 499 -----ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHW 572 (628)
Q Consensus 499 -----~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~ 572 (628)
+|||+|+..............+||+.|||||++.++.++.++|||||||++|||+| |++||... .....+...
T Consensus 182 ~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~-~~~~~~~~~ 260 (311)
T d1t46a_ 182 RITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM-PVDSKFYKM 260 (311)
T ss_dssp TEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC-CSSHHHHHH
T ss_pred CcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCC-CHHHHHHHH
Confidence 39999997654443344455679999999999999999999999999999999999 55555443 222222222
Q ss_pred HHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 573 VNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.... +...+..++.++.+|+.+||+.||++||||.||
T Consensus 261 i~~~~------------------~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~i 298 (311)
T d1t46a_ 261 IKEGF------------------RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQI 298 (311)
T ss_dssp HHHTC------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HhcCC------------------CCCCcccccHHHHHHHHHHcCCChhHCcCHHHH
Confidence 22111 112233456779999999999999999999764
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.3e-31 Score=266.46 Aligned_cols=200 Identities=22% Similarity=0.233 Sum_probs=136.9
Q ss_pred hhcCCCcccccccCCccEEEEEEe-cC-CcEEEEEEeeccc--hhHHHHHHHHHHHhhcc---cCCCcceeeeeccCCC-
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRI-HY-GMEVAVKVFDLQY--REAFKNFDIECDMMKHI---RHRNLIKIISSCSNDD- 496 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~-~~-~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~~~- 496 (628)
..++|+..+.||+|+||+||+|+. .+ ++.||||+++... ......+.+|+.+++.+ +|||||+++++|....
T Consensus 5 ~~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~ 84 (305)
T d1blxa_ 5 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 84 (305)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred CcCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccc
Confidence 357899999999999999999986 44 6789999997542 22234567888887766 7999999999874210
Q ss_pred ----cc-------------------------------------------------------------------ccccccc
Q 037488 497 ----FK-------------------------------------------------------------------ADFGMAK 505 (628)
Q Consensus 497 ----~~-------------------------------------------------------------------~DFGla~ 505 (628)
.. +|||+++
T Consensus 85 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~~ 164 (305)
T d1blxa_ 85 DRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR 164 (305)
T ss_dssp SSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCC
T ss_pred ccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchhhhh
Confidence 00 4999998
Q ss_pred cccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc---cc
Q 037488 506 PLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS---VM 582 (628)
Q Consensus 506 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~---~~ 582 (628)
...... .....+||+.|||||++.+..|+.++||||+||++|||+||++||.+.... ..+........... +.
T Consensus 165 ~~~~~~---~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~ 240 (305)
T d1blxa_ 165 IYSFQM---ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV-DQLGKILDVIGLPGEEDWP 240 (305)
T ss_dssp CCCGGG---GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCCGGGSC
T ss_pred hhcccc---cCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHH-HHHHHHHHhhCCCchhccc
Confidence 654332 235678999999999999999999999999999999999999999753221 11222211111100 00
Q ss_pred e---eecccc-cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 583 K---VVDAHL-LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 583 ~---~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ...... ..........+...++++++|+.+||+.||++|||+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~ 290 (305)
T d1blxa_ 241 RDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSA 290 (305)
T ss_dssp TTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred ccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHH
Confidence 0 000000 000111112234457789999999999999999998763
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.1e-31 Score=263.25 Aligned_cols=199 Identities=23% Similarity=0.228 Sum_probs=137.3
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
++|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||++++++..++..
T Consensus 2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e 81 (298)
T d1gz8a_ 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 81 (298)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence 5799999999999999999997 679999999996543 22356789999999999999999999988654321
Q ss_pred --------------------------------------------------------------ccccccccccccCccccc
Q 037488 499 --------------------------------------------------------------ADFGMAKPLLKEDQSLIQ 516 (628)
Q Consensus 499 --------------------------------------------------------------~DFGla~~~~~~~~~~~~ 516 (628)
+|||+|+...... ...
T Consensus 82 ~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~--~~~ 159 (298)
T d1gz8a_ 82 FLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV--RTY 159 (298)
T ss_dssp CCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCS--BCT
T ss_pred ecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceeccCCc--ccc
Confidence 4999998764332 223
Q ss_pred ccccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhc-CC-c-cceeec-ccccC
Q 037488 517 TQTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL-PI-S-VMKVVD-AHLLS 591 (628)
Q Consensus 517 ~~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~-~~-~-~~~~~~-~~~~~ 591 (628)
...+||+.|+|||++.... ++.++||||+||++|||++|+.||.+....+ .+........ +. . ...... +....
T Consensus 160 ~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (298)
T d1gz8a_ 160 THEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEID-QLFRIFRTLGTPDEVVWPGVTSMPDYKP 238 (298)
T ss_dssp TCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTSTTGGGSTTCCT
T ss_pred eeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHH-HHHHHHHhcCCCchhhcccccccccccc
Confidence 4568999999999887766 5789999999999999999999997532211 1111111111 11 0 000000 00000
Q ss_pred C-----cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 592 Q-----EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 592 ~-----~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. ...........+.++++|+.+||+.||++|||++|+
T Consensus 239 ~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~el 280 (298)
T d1gz8a_ 239 SFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAA 280 (298)
T ss_dssp TSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred ccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 0 000011122456789999999999999999998763
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=3.5e-31 Score=267.83 Aligned_cols=178 Identities=21% Similarity=0.239 Sum_probs=131.9
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc---hhHHHHHH---HHHHHhhcccCCCcceeeeeccCCCcc
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY---REAFKNFD---IECDMMKHIRHRNLIKIISSCSNDDFK 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~---~E~~~l~~l~h~niv~l~~~~~~~~~~ 498 (628)
.++|+..+.||+|+||.||+|+. .+|+.||||++.... ......+. +|+++++.++|||||++++++..++..
T Consensus 3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~ 82 (364)
T d1omwa3 3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 82 (364)
T ss_dssp STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEE
Confidence 36799999999999999999997 679999999996432 11122333 457778888999999999987664421
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+|+......
T Consensus 83 ~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~- 161 (364)
T d1omwa3 83 SFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK- 161 (364)
T ss_dssp EEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSSC-
T ss_pred EEEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeeceeeecCCCc-
Confidence 4999999764332
Q ss_pred ccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccccC
Q 037488 513 SLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHLLS 591 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (628)
....+||+.|||||++.+ ..|+.++||||+||++|||+||+.||....... .........
T Consensus 162 ---~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~--~~~~~~~~~-------------- 222 (364)
T d1omwa3 162 ---PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD--KHEIDRMTL-------------- 222 (364)
T ss_dssp ---CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSC--HHHHHHHSS--------------
T ss_pred ---ccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHhcc--------------
Confidence 245689999999999875 568999999999999999999999997643222 111111110
Q ss_pred CcccchhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 592 QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
......+..+++++.+|+.+||+.||++|||+
T Consensus 223 --~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~ 254 (364)
T d1omwa3 223 --TMAVELPDSFSPELRSLLEGLLQRDVNRRLGC 254 (364)
T ss_dssp --SCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTT
T ss_pred --cCCCCCCCCCCHHHHHHHHHHcccCHHHhCCC
Confidence 01122333467779999999999999999995
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.2e-32 Score=264.48 Aligned_cols=172 Identities=22% Similarity=0.300 Sum_probs=132.8
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccch------hHHHHHHHHHHHhhccc--CCCcceeeeeccCCC
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYR------EAFKNFDIECDMMKHIR--HRNLIKIISSCSNDD 496 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~ 496 (628)
.++|+..+.||+|+||+||+|+. .+|+.||||+++.... .....+.+|+.++++++ |||||++++++.+++
T Consensus 3 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~ 82 (273)
T d1xwsa_ 3 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD 82 (273)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS
T ss_pred CCeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCC
Confidence 35799999999999999999987 6799999999975321 12344678999999996 899999999887644
Q ss_pred cc--------------------------------------------------------------------cccccccccc
Q 037488 497 FK--------------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 497 ~~--------------------------------------------------------------------~DFGla~~~~ 508 (628)
.. +|||+|+...
T Consensus 83 ~~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~ 162 (273)
T d1xwsa_ 83 SFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLK 162 (273)
T ss_dssp EEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECC
T ss_pred eEEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceecc
Confidence 21 4999998653
Q ss_pred ccCcccccccccccccccCccccccCcc-CcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecc
Q 037488 509 KEDQSLIQTQTLATIGYMAPEYGREGRV-STNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587 (628)
Q Consensus 509 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (628)
.. ..++.+||+.|||||++.+..| +.++||||+||++|||+||+.||.... ....
T Consensus 163 ~~----~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~-------~i~~------------- 218 (273)
T d1xwsa_ 163 DT----VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-------EIIR------------- 218 (273)
T ss_dssp SS----CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------HHHH-------------
T ss_pred cc----cccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCch-------HHhh-------------
Confidence 32 2345689999999999988776 577999999999999999999996421 0100
Q ss_pred cccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. ...+..+++++.+++.+||+.||++|||++|+
T Consensus 219 ---~~----~~~~~~~s~~~~~li~~~L~~dp~~R~s~~ei 252 (273)
T d1xwsa_ 219 ---GQ----VFFRQRVSSECQHLIRWCLALRPSDRPTFEEI 252 (273)
T ss_dssp ---CC----CCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ---cc----cCCCCCCCHHHHHHHHHHccCCHhHCcCHHHH
Confidence 00 01222356779999999999999999998763
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=2.1e-28 Score=251.66 Aligned_cols=194 Identities=32% Similarity=0.497 Sum_probs=154.8
Q ss_pred CccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCC
Q 037488 152 PEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLT 231 (628)
Q Consensus 152 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 231 (628)
...+..+++++.+++++|.+++..| +...++|+.|++++|+++.. +.+..+++|+.|++++|.+++.. .+..++
T Consensus 190 ~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~ 263 (384)
T d2omza2 190 ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLT 263 (384)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCT
T ss_pred ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccc
Confidence 3456678888899999998886654 45678889999999988742 46778888999999999887654 377888
Q ss_pred CCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCC
Q 037488 232 NLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEY 311 (628)
Q Consensus 232 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 311 (628)
+|+.|++++|+++.+++ +..+..++.+.++.|.+++. ..+..+++++.|++++|++++..+ +..+++|++|++++
T Consensus 264 ~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~ 338 (384)
T d2omza2 264 KLTELKLGANQISNISP-LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFAN 338 (384)
T ss_dssp TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCS
T ss_pred cCCEeeccCcccCCCCc-cccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCC
Confidence 89999999998888764 66778888999988888753 347788888999999998886543 67788899999999
Q ss_pred CcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCC
Q 037488 312 NRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFN 360 (628)
Q Consensus 312 n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N 360 (628)
|++++ ++ .+.++++|+.|++++|+++++.| +.++++|+.|++++|
T Consensus 339 n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 339 NKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp SCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 98874 44 58888999999999999887654 788889999999887
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Probab=99.96 E-value=3.6e-31 Score=260.39 Aligned_cols=199 Identities=21% Similarity=0.226 Sum_probs=137.2
Q ss_pred cCCCcccccccCCccEEEEEEecCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 498 (628)
++|...+.||+|+||+||+|+..+|+.||||+++... ....+.+.+|+.++++++|||||++++++.++...
T Consensus 2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~ 81 (286)
T d1ob3a_ 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (286)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence 5789999999999999999999889999999996543 22357799999999999999999999988765432
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||.|....... .....
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~--~~~~~ 159 (286)
T d1ob3a_ 82 LDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPV--RKYTH 159 (286)
T ss_dssp CSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------
T ss_pred ehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceecccCc--cccce
Confidence 4999998754332 12244
Q ss_pred ccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC---ccceee-----cccc
Q 037488 519 TLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI---SVMKVV-----DAHL 589 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~ 589 (628)
.+||+.|+|||++.+. .++.++||||+||++|||++|+.||.+....+ .+.......... .+.... ....
T Consensus 160 ~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (286)
T d1ob3a_ 160 EIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEAD-QLMRIFRILGTPNSKNWPNVTELPKYDPNF 238 (286)
T ss_dssp --CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTSTTGGGSTTCCTTC
T ss_pred ecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHH-HHHHHHHhhCCCChhhccchhhhhhccccc
Confidence 5799999999998765 46999999999999999999999997542211 112211111111 000000 0000
Q ss_pred c-CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 590 L-SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 590 ~-~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
. .............++++.+|+.+||+.||++|||++|+
T Consensus 239 ~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~el 278 (286)
T d1ob3a_ 239 TVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQA 278 (286)
T ss_dssp CCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred ccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 0 00001111223456789999999999999999998764
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2e-31 Score=264.53 Aligned_cols=179 Identities=25% Similarity=0.390 Sum_probs=129.7
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCc--EEEEEEeecc-chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCCcc---
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGM--EVAVKVFDLQ-YREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDDFK--- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~--~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~--- 498 (628)
++|+..+.||+|+||+||+|++ .+|. .||||+++.. ..+..+.|.+|+++++++ +|||||+++|+|.+++..
T Consensus 10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV 89 (309)
T d1fvra_ 10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 89 (309)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence 5677789999999999999987 4454 5788888643 334556799999999999 799999999987654311
Q ss_pred -------------------------------------------------------------------------------c
Q 037488 499 -------------------------------------------------------------------------------A 499 (628)
Q Consensus 499 -------------------------------------------------------------------------------~ 499 (628)
+
T Consensus 90 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~~~kl~ 169 (309)
T d1fvra_ 90 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIA 169 (309)
T ss_dssp ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEEC
T ss_pred EEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEcCCCceEEc
Confidence 4
Q ss_pred cccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCC-CCCCcccCCCccHHHHHHhhcC
Q 037488 500 DFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRK-KPTDEIFSGEMTLKHWVNDLLP 578 (628)
Q Consensus 500 DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~-~p~~~~~~~~~~~~~~~~~~~~ 578 (628)
|||+|+....... .....||..|+|||.+.++.|+.++|||||||++|||++|. +||.+.. ........
T Consensus 170 DfG~a~~~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~-----~~~~~~~i-- 239 (309)
T d1fvra_ 170 DFGLSRGQEVYVK---KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT-----CAELYEKL-- 239 (309)
T ss_dssp CTTCEESSCEECC---C----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC-----HHHHHHHG--
T ss_pred ccccccccccccc---ccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCC-----HHHHHHHH--
Confidence 9999986533321 23456999999999999999999999999999999999975 5665421 11111111
Q ss_pred CccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 579 ISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.. ..++..+..+++++.+|+.+||+.||++||||+||
T Consensus 240 ----------~~---~~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~ei 276 (309)
T d1fvra_ 240 ----------PQ---GYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQI 276 (309)
T ss_dssp ----------GG---TCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred ----------Hh---cCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 00 11233445677889999999999999999999764
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=9.3e-31 Score=259.03 Aligned_cols=185 Identities=20% Similarity=0.347 Sum_probs=129.4
Q ss_pred hhcCCCcccccccCCccEEEEEEec------CCcEEEEEEeecc-chhHHHHHHHHHHHhhcc-cCCCcceeeeeccCCC
Q 037488 425 ATNGFSENNLIDRGGIGYVYKRRIH------YGMEVAVKVFDLQ-YREAFKNFDIECDMMKHI-RHRNLIKIISSCSNDD 496 (628)
Q Consensus 425 ~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 496 (628)
..++|...+.||+|+||.||+|++. +++.||||+++.. .....+.+.+|..++.++ +|||||++++++...+
T Consensus 11 ~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~ 90 (299)
T d1ywna1 11 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG 90 (299)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT
T ss_pred cHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCC
Confidence 3467899999999999999999852 3578999999753 234456788888888887 7899999988764321
Q ss_pred cc------------------------------------------------------------------------------
Q 037488 497 FK------------------------------------------------------------------------------ 498 (628)
Q Consensus 497 ~~------------------------------------------------------------------------------ 498 (628)
..
T Consensus 91 ~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NILl~~~ 170 (299)
T d1ywna1 91 GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEK 170 (299)
T ss_dssp SCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGG
T ss_pred CeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCccceeECCC
Confidence 00
Q ss_pred -----ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhC-CCCCCcccCCCccHHHH
Q 037488 499 -----ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTR-KKPTDEIFSGEMTLKHW 572 (628)
Q Consensus 499 -----~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg-~~p~~~~~~~~~~~~~~ 572 (628)
+|||+|+............+.+||+.|||||++.++.|+.++|||||||++|||+|| ++||....... .+...
T Consensus 171 ~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~-~~~~~ 249 (299)
T d1ywna1 171 NVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-EFCRR 249 (299)
T ss_dssp GCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSH-HHHHH
T ss_pred CcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHH-HHHHH
Confidence 499999976544433344556899999999999999999999999999999999997 56776432221 11111
Q ss_pred HHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 573 VNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+... ..+..+..+++++++++.+||+.||++||||+||
T Consensus 250 ~~~~------------------~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~ei 287 (299)
T d1ywna1 250 LKEG------------------TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSEL 287 (299)
T ss_dssp HHHT------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HhcC------------------CCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 1110 1122344567789999999999999999998764
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.3e-31 Score=260.33 Aligned_cols=191 Identities=19% Similarity=0.256 Sum_probs=127.6
Q ss_pred cCCCcccccccCCccEEEEEEecCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc--------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK-------- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-------- 498 (628)
+.|...+.||+|+||.||+|+.. |+.||||+++..... ...+.+|+..+++++|||||+++|+|..++..
T Consensus 3 ~~~~l~~~iG~G~fg~Vy~~~~~-g~~vAvK~~~~~~~~-~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~ 80 (303)
T d1vjya_ 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEEC-CEEEEEEEECccchh-HHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEE
Confidence 45667789999999999999864 899999999754322 12233466666788999999999998643210
Q ss_pred ---------------------------------------------------------------------ccccccccccc
Q 037488 499 ---------------------------------------------------------------------ADFGMAKPLLK 509 (628)
Q Consensus 499 ---------------------------------------------------------------------~DFGla~~~~~ 509 (628)
+|||+|+....
T Consensus 81 Ey~~~g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~ 160 (303)
T d1vjya_ 81 DYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDS 160 (303)
T ss_dssp ECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEET
T ss_pred ecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccC
Confidence 49999997644
Q ss_pred cCcc--cccccccccccccCccccccC------ccCcccchhhHhHHHHHHhhCCCCCCcccCCCc----------cHHH
Q 037488 510 EDQS--LIQTQTLATIGYMAPEYGREG------RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEM----------TLKH 571 (628)
Q Consensus 510 ~~~~--~~~~~~~gt~~y~aPE~~~~~------~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~----------~~~~ 571 (628)
.... ......+||++|||||++.+. .++.|+|||||||++|||+||++|+........ ....
T Consensus 161 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (303)
T d1vjya_ 161 ATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEE 240 (303)
T ss_dssp TTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHH
T ss_pred CCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHH
Confidence 3221 122346799999999998754 378899999999999999999988754222111 1111
Q ss_pred HHHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 572 WVNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...... +.......+ ......+++.++.+++.+||+.||++||||.||
T Consensus 241 ~~~~~~--------~~~~~p~~~-~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei 288 (303)
T d1vjya_ 241 MRKVVC--------EQKLRPNIP-NRWQSCEALRVMAKIMRECWYANGAARLTALRI 288 (303)
T ss_dssp HHHHHT--------TSCCCCCCC-GGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHH
T ss_pred HHHHHh--------ccccCCCCC-cccCChHHHHHHHHHHHHHcccCHhHCcCHHHH
Confidence 111111 111100100 111123456779999999999999999998764
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.4e-31 Score=258.75 Aligned_cols=183 Identities=24% Similarity=0.390 Sum_probs=133.1
Q ss_pred hcCCCcccccccCCccEEEEEEec-C-------CcEEEEEEeeccc-hhHHHHHHHHHHHhhcc-cCCCcceeeeeccCC
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRIH-Y-------GMEVAVKVFDLQY-REAFKNFDIECDMMKHI-RHRNLIKIISSCSND 495 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~~-~-------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 495 (628)
.++|...+.||+|+||.||+|+.. . +..||||+++... ......+.+|+..+.++ +|||||+++++|.++
T Consensus 12 ~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~ 91 (299)
T d1fgka_ 12 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 91 (299)
T ss_dssp GGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccC
Confidence 457888899999999999999752 2 3579999997643 34457789999999998 899999999988654
Q ss_pred Ccc-----------------------------------------------------------------------------
Q 037488 496 DFK----------------------------------------------------------------------------- 498 (628)
Q Consensus 496 ~~~----------------------------------------------------------------------------- 498 (628)
+..
T Consensus 92 ~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiLl~~~ 171 (299)
T d1fgka_ 92 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTED 171 (299)
T ss_dssp SSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTT
T ss_pred CeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeecccceeecCC
Confidence 311
Q ss_pred -----ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhh-CCCCCCcccCCCccHHHH
Q 037488 499 -----ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFT-RKKPTDEIFSGEMTLKHW 572 (628)
Q Consensus 499 -----~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~lt-g~~p~~~~~~~~~~~~~~ 572 (628)
+|||+++...............||+.|||||++.++.|+.++|||||||++|||++ |++||.+.... .....
T Consensus 172 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~--~~~~~ 249 (299)
T d1fgka_ 172 NVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE--ELFKL 249 (299)
T ss_dssp CCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHHHH
T ss_pred CCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHH--HHHHH
Confidence 39999997655443333445679999999999999999999999999999999998 68888653211 11111
Q ss_pred HHhhcCCccceeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 573 VNDLLPISVMKVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
+.. ...+..|..+++++++|+.+||+.||++||||.||
T Consensus 250 i~~------------------~~~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~ei 287 (299)
T d1fgka_ 250 LKE------------------GHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQL 287 (299)
T ss_dssp HHT------------------TCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHc------------------CCCCCCCccchHHHHHHHHHHccCCHhHCcCHHHH
Confidence 110 01122334567789999999999999999999764
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=6.7e-29 Score=247.80 Aligned_cols=249 Identities=30% Similarity=0.506 Sum_probs=205.1
Q ss_pred CCcEEEcccCCCCCC--CchHHhccccccceeeccC-CcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCE
Q 037488 111 YLKYFSFSNNSLDGI--LPRAIGNLSQSMEIFWMHS-CNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQL 187 (628)
Q Consensus 111 ~L~~L~l~~n~l~~~--~p~~~~~l~~~l~~l~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 187 (628)
+++.|+|++|.+.+. +|..++.++ .|+.|++++ |++.+.+|..|+++++|++|+|++|++.+..+..+..+..|+.
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCc-cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence 466677777776653 566777665 577777765 6777778888888888999999999888888888888888999
Q ss_pred eecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCC-cEEEccCCcCCcC-CCCccCCCCCcEEEcCCCC
Q 037488 188 LNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNL-RSLHLGSNQITSI-PSTLLNLKDILYLNLSSNF 265 (628)
Q Consensus 188 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~l-p~~~~~l~~L~~L~l~~n~ 265 (628)
+++++|.+.+.+|..+.+++.++.+++++|.+.+.+|+.+..+.++ +.+++++|+++.. |..+..+ .+.+++++++.
T Consensus 130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~~~ 208 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSE
T ss_pred cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 9999888888888888888899999999998888888888877775 7888888888864 4444444 45578999998
Q ss_pred CcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchh
Q 037488 266 FTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPIS 345 (628)
Q Consensus 266 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 345 (628)
..+.+|..+..+++++.+++++|.+.+.+| .++.+++|+.|+|++|++++.+|..++.+++|+.|+|++|+++|.+|.
T Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~- 286 (313)
T d1ogqa_ 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ- 286 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-
Confidence 888888888999999999999999987655 578889999999999999999999999999999999999999988874
Q ss_pred hhcCCCCCEEEccCCcce
Q 037488 346 LEKLLDLKDINVSFNKLE 363 (628)
Q Consensus 346 ~~~l~~L~~l~l~~N~l~ 363 (628)
+..+.+|+.+++++|+..
T Consensus 287 ~~~L~~L~~l~l~~N~~l 304 (313)
T d1ogqa_ 287 GGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp STTGGGSCGGGTCSSSEE
T ss_pred cccCCCCCHHHhCCCccc
Confidence 567888999999999743
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.6e-30 Score=256.58 Aligned_cols=202 Identities=19% Similarity=0.205 Sum_probs=133.7
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
.++|+..+.||+|+||+||+|+. .+|+.||||++.... ....+++.+|+++|++++||||+++++++.....
T Consensus 9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~ 88 (318)
T d3blha1 9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 88 (318)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence 47899999999999999999997 689999999986532 2335678899999999999999999987643210
Q ss_pred ---c------------------------------------------------------------------cccccccccc
Q 037488 498 ---K------------------------------------------------------------------ADFGMAKPLL 508 (628)
Q Consensus 498 ---~------------------------------------------------------------------~DFGla~~~~ 508 (628)
. +|||+|+...
T Consensus 89 ~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~ 168 (318)
T d3blha1 89 KGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFS 168 (318)
T ss_dssp --CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred CceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeeecceeeecc
Confidence 0 3999998654
Q ss_pred ccCc--ccccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhc--CCc-cc
Q 037488 509 KEDQ--SLIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLL--PIS-VM 582 (628)
Q Consensus 509 ~~~~--~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~--~~~-~~ 582 (628)
.... .....+.+||++|+|||++.+. .|+.++||||+||++|||++|++||.+.... ........... +.. ..
T Consensus 169 ~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~ 247 (318)
T d3blha1 169 LAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQ-HQLALISQLCGSITPEVWP 247 (318)
T ss_dssp C-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCCTTTST
T ss_pred cccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHH-HHHHHHHHhcCCCChhhcc
Confidence 3221 1222345799999999998765 6899999999999999999999999753211 11111111111 110 00
Q ss_pred eeecc----cccCCcccchh-----chhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 583 KVVDA----HLLSQEDKHFV-----IKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 583 ~~~~~----~~~~~~~~~~~-----~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
..... ........... ......+++++|+.+||+.||++||||+|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~el 302 (318)
T d3blha1 248 NVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDA 302 (318)
T ss_dssp TCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred ccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHH
Confidence 00000 00000000000 011234578899999999999999999764
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=7.9e-30 Score=257.80 Aligned_cols=197 Identities=24% Similarity=0.214 Sum_probs=132.5
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK---- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 498 (628)
.+.|...+.||+|+||+||+|.. .+|+.||||+++.. .....+.+.+|+++|++++|||||+++++|...+..
T Consensus 17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~ 96 (346)
T d1cm8a_ 17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 96 (346)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence 46899999999999999999987 67999999999753 334467789999999999999999999988654310
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+|+.....
T Consensus 97 ~~~lv~e~~~~~l~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~-- 174 (346)
T d1cm8a_ 97 DFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSE-- 174 (346)
T ss_dssp CCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSS--
T ss_pred eEEEEEecccccHHHHHHhccccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccceeccCCc--
Confidence 399999865332
Q ss_pred ccccccccccccccCccccccC-ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC--cccee-----
Q 037488 513 SLIQTQTLATIGYMAPEYGREG-RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI--SVMKV----- 584 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~----- 584 (628)
.+..+||+.|||||++.+. .++.++||||+||++|||++|++||.+.... ..+.......... .....
T Consensus 175 ---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (346)
T d1cm8a_ 175 ---MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHL-DQLKEIMKVTGTPPAEFVQRLQSDE 250 (346)
T ss_dssp ---CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCHHHHHTCSCHH
T ss_pred ---cccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChH-HHHHHHHhccCCCcHHHHhhhcchh
Confidence 2456899999999998764 4689999999999999999999999753211 1111111111100 00000
Q ss_pred ---ecccccC-CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 585 ---VDAHLLS-QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 585 ---~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
....... ............++++++|+.+||+.||++|||+.|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~ei 298 (346)
T d1cm8a_ 251 AKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEA 298 (346)
T ss_dssp HHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred hhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHH
Confidence 0000000 0000111223456779999999999999999998764
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3e-29 Score=247.75 Aligned_cols=200 Identities=19% Similarity=0.180 Sum_probs=141.0
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc--hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY--REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
++|+..+.||+|+||+||+|+. .+|+.||||+++... ....+++.+|+.+++.++|||||+++++|.+.+..
T Consensus 2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~ 81 (292)
T d1unla_ 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence 5789999999999999999997 679999999997543 34467889999999999999999999988765432
Q ss_pred -------------------------------------------------------------ccccccccccccCcccccc
Q 037488 499 -------------------------------------------------------------ADFGMAKPLLKEDQSLIQT 517 (628)
Q Consensus 499 -------------------------------------------------------------~DFGla~~~~~~~~~~~~~ 517 (628)
+|||.|+....... ...
T Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~--~~~ 159 (292)
T d1unla_ 82 FCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR--CYS 159 (292)
T ss_dssp CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCS--CCC
T ss_pred eccccccccccccccccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhcccCCCc--cce
Confidence 49999997644332 223
Q ss_pred cccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC---cc---ceeecc---
Q 037488 518 QTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI---SV---MKVVDA--- 587 (628)
Q Consensus 518 ~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~--- 587 (628)
...+++.|+|||++.+.. ++.++||||+||++|||++|+.||..................+. .. ....+.
T Consensus 160 ~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (292)
T d1unla_ 160 AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPY 239 (292)
T ss_dssp SCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCC
T ss_pred eeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhccccccc
Confidence 456889999999988765 69999999999999999999999754222121222211111110 00 000000
Q ss_pred cccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
................++++.+|+.+||+.||++||||+||
T Consensus 240 ~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~ 280 (292)
T d1unla_ 240 PMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEA 280 (292)
T ss_dssp CCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred ccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 00001111122333456789999999999999999999764
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=3.3e-30 Score=255.10 Aligned_cols=184 Identities=18% Similarity=0.173 Sum_probs=132.1
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccC-CCcc------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSN-DDFK------ 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~------ 498 (628)
++|+..+.||+|+||+||+|+. .+|+.||||++..... ...+.+|+++++.++|+|+|..++.|.. ++..
T Consensus 7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~ 84 (299)
T d1ckia_ 7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL 84 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT--SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc--CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEE
Confidence 5699999999999999999987 6799999999875432 2457889999999988887766554422 1110
Q ss_pred ---------------------------------------------------------------ccccccccccccCcc--
Q 037488 499 ---------------------------------------------------------------ADFGMAKPLLKEDQS-- 513 (628)
Q Consensus 499 ---------------------------------------------------------------~DFGla~~~~~~~~~-- 513 (628)
+|||+|+.+......
T Consensus 85 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~ 164 (299)
T d1ckia_ 85 LGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQH 164 (299)
T ss_dssp CCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCB
T ss_pred cCCchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccc
Confidence 499999976433211
Q ss_pred ---cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHH--HHHHhhcCCccceeeccc
Q 037488 514 ---LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLK--HWVNDLLPISVMKVVDAH 588 (628)
Q Consensus 514 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 588 (628)
......+||+.|||||++.+..|+.++|||||||++|||+||+.||........... .+... .
T Consensus 165 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~------------~ 232 (299)
T d1ckia_ 165 IPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEK------------K 232 (299)
T ss_dssp CCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHH------------H
T ss_pred eeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcc------------c
Confidence 122455799999999999999999999999999999999999999976433221111 11100 0
Q ss_pred ccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCC
Q 037488 589 LLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKE 627 (628)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~e 627 (628)
.. ......+..+++++.+++.+||+.||++||++++
T Consensus 233 ~~---~~~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~ 268 (299)
T d1ckia_ 233 MS---TPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSY 268 (299)
T ss_dssp HH---SCHHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHH
T ss_pred CC---CChhHhccCCCHHHHHHHHHHccCChhHCcCHHH
Confidence 00 0011223356788999999999999999999754
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.3e-29 Score=254.89 Aligned_cols=199 Identities=20% Similarity=0.145 Sum_probs=130.0
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
.++|.+.+.||+|+||+||+|+. .+|+.||||++... .....+.+.+|+.++++++|||||++++++.....
T Consensus 16 ~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~ 95 (355)
T d2b1pa1 16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 95 (355)
T ss_dssp ETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCc
Confidence 36799999999999999999997 57999999999753 23445678999999999999999999998854321
Q ss_pred -c---------------------------------------------------------------ccccccccccccCcc
Q 037488 498 -K---------------------------------------------------------------ADFGMAKPLLKEDQS 513 (628)
Q Consensus 498 -~---------------------------------------------------------------~DFGla~~~~~~~~~ 513 (628)
. +|||+++......
T Consensus 96 ~~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~-- 173 (355)
T d2b1pa1 96 DVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF-- 173 (355)
T ss_dssp EEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC----------
T ss_pred eeEEEEeccchHHHHhhhcCCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhhhhcccccc--
Confidence 0 3899888654332
Q ss_pred cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC----------c---
Q 037488 514 LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI----------S--- 580 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~----------~--- 580 (628)
.....+||+.|+|||++.+..|++++||||+||++|||++|++||.+..... ............ .
T Consensus 174 -~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 251 (355)
T d2b1pa1 174 -MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYID-QWNKVIEQLGTPCPEFMKKLQPTVRN 251 (355)
T ss_dssp --------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCHHHHTTSCHHHHH
T ss_pred -ccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHH-HHHHHHHhccCCCHHHHHHhhhhHHH
Confidence 2245579999999999999999999999999999999999999996432111 111111100000 0
Q ss_pred -------cceeeccccc--CCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 581 -------VMKVVDAHLL--SQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 581 -------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
......+... .........+...+.++.+|+.+||+.||++||||+||
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~el 308 (355)
T d2b1pa1 252 YVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDA 308 (355)
T ss_dssp HHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred HhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHH
Confidence 0000000000 00111112233467889999999999999999998764
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.3e-29 Score=253.76 Aligned_cols=202 Identities=19% Similarity=0.158 Sum_probs=135.5
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccc-hhHHHHHHHHHHHhhcccCCCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQY-REAFKNFDIECDMMKHIRHRNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----- 498 (628)
+.+|...+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+++|++++|||||++++++......
T Consensus 7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~ 86 (345)
T d1pmea_ 7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 86 (345)
T ss_dssp CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceE
Confidence 45799999999999999999986 689999999997543 44467789999999999999999999987543210
Q ss_pred ----------------------------------------------------------------ccccccccccccCcc-
Q 037488 499 ----------------------------------------------------------------ADFGMAKPLLKEDQS- 513 (628)
Q Consensus 499 ----------------------------------------------------------------~DFGla~~~~~~~~~- 513 (628)
+|||+|+........
T Consensus 87 ~l~~~~~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~ 166 (345)
T d1pmea_ 87 YLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHT 166 (345)
T ss_dssp EEEEECCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBC
T ss_pred EEEEeecCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceeeccCCCccc
Confidence 399999876443221
Q ss_pred cccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccc----------
Q 037488 514 LIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVM---------- 582 (628)
Q Consensus 514 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~---------- 582 (628)
......+||+.|+|||++.. ..|+.++||||+||++|||++|++||......+. ..............
T Consensus 167 ~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 245 (345)
T d1pmea_ 167 GFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ-LNHILGILGSPSQEDLNCIINLKA 245 (345)
T ss_dssp CTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCSCCHHHHHTCCCHHH
T ss_pred eeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHH-HHHHhhhccCCChhhhhhhhhhhh
Confidence 22345679999999999855 4579999999999999999999999975322111 11111100000000
Q ss_pred -eeecccccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 583 -KVVDAHLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 583 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.....................++++++|+.+||+.||++|||+.|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~ 292 (345)
T d1pmea_ 246 RNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQA 292 (345)
T ss_dssp HHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred hcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 0000000000000011122345679999999999999999998763
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=5.5e-26 Score=225.60 Aligned_cols=227 Identities=24% Similarity=0.254 Sum_probs=161.9
Q ss_pred CCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCC
Q 037488 33 QNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYL 112 (628)
Q Consensus 33 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L 112 (628)
+++++|+|++|+|+.+.+..|.++++|+.|++++|.+..+.|++|.++++|+.|++++|+++.++.. ....+
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~--------~~~~l 102 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--------MPKTL 102 (305)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS--------CCTTC
T ss_pred CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc--------hhhhh
Confidence 3567777777888766667788888888888888888888888888888888888888888876532 23577
Q ss_pred cEEEcccCCCCCCCchHHhccccccceeeccCCcc--cccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeec
Q 037488 113 KYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNI--SGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNL 190 (628)
Q Consensus 113 ~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 190 (628)
+.|+++.|.+.++.+..+.... ....+....|.. ....+..+..+++|+.+++++|.+.. +|.. .+++|+.|++
T Consensus 103 ~~L~~~~n~l~~l~~~~~~~~~-~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l 178 (305)
T d1xkua_ 103 QELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHL 178 (305)
T ss_dssp CEEECCSSCCCBBCHHHHTTCT-TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEEC
T ss_pred hhhhccccchhhhhhhhhhccc-cccccccccccccccCCCccccccccccCccccccCCccc-cCcc--cCCccCEEEC
Confidence 8888888888876665555443 344555554432 23344566777777777777777763 3433 2467777777
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCC
Q 037488 191 EYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPL 270 (628)
Q Consensus 191 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~ 270 (628)
++|...+..+..+.+++.++.|++++|.+.+..+..|.++++|++|+|++|+|+++|.++..+++|++|++++|+|+...
T Consensus 179 ~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~ 258 (305)
T d1xkua_ 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 258 (305)
T ss_dssp TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777776543
Q ss_pred C
Q 037488 271 P 271 (628)
Q Consensus 271 ~ 271 (628)
.
T Consensus 259 ~ 259 (305)
T d1xkua_ 259 S 259 (305)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=3.5e-26 Score=234.89 Aligned_cols=307 Identities=26% Similarity=0.357 Sum_probs=228.8
Q ss_pred CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCC
Q 037488 32 LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKY 111 (628)
Q Consensus 32 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~ 111 (628)
+.+|++|++++|.|+.+ +.+..+++|++|+|++|+++++.+ |+++++|++|++++|.++.++ .+.++++
T Consensus 43 l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~-------~l~~l~~ 111 (384)
T d2omza2 43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT-------PLANLTN 111 (384)
T ss_dssp HTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-------GGTTCTT
T ss_pred hCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccccccc-------ccccccc
Confidence 45667777777777643 346677888888888888877643 778888888888888877643 3667788
Q ss_pred CcEEEcccCCCCCCCchHHhccccccceeeccCCccccc-------------------CCccccCCCCCCEEEccCCcCC
Q 037488 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGG-------------------IPEEISNLTNLIAIYLGGNKLN 172 (628)
Q Consensus 112 L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~-------------------~~~~~~~l~~L~~L~L~~n~l~ 172 (628)
|+.|++++|.+++..+.... ..........+.+... ....+...+.........|...
T Consensus 112 L~~L~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (384)
T d2omza2 112 LTGLTLFNNQITDIDPLKNL---TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 188 (384)
T ss_dssp CCEEECCSSCCCCCGGGTTC---TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred cccccccccccccccccccc---ccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc
Confidence 88888888877755433211 1222222222222111 1123344455555555555543
Q ss_pred ccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccC
Q 037488 173 GSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLN 252 (628)
Q Consensus 173 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~ 252 (628)
....+..+++++.+++++|.+.+..| +...++|+.|++++|.++.. +.+..+++|+.|++++|.++.++. +..
T Consensus 189 --~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~ 261 (384)
T d2omza2 189 --DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSG 261 (384)
T ss_dssp --CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTT
T ss_pred --cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc-ccc
Confidence 34557788999999999999986544 56678999999999999853 468899999999999999998874 778
Q ss_pred CCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEE
Q 037488 253 LKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLD 332 (628)
Q Consensus 253 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 332 (628)
+++|++|++++|.+++..+ +..++.++.++++.|.+++. ..+..+++++.|++++|++++.. .+..+++|+.|+
T Consensus 262 ~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~ 335 (384)
T d2omza2 262 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLF 335 (384)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEE
T ss_pred cccCCEeeccCcccCCCCc--cccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEE
Confidence 8999999999999986543 77889999999999999853 34678899999999999998653 388999999999
Q ss_pred CcCCcccccCchhhhcCCCCCEEEccCCcceecCC
Q 037488 333 LSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIP 367 (628)
Q Consensus 333 l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p 367 (628)
+++|+++++ + .+..+++|++|++++|++++.+|
T Consensus 336 L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~ 368 (384)
T d2omza2 336 FANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP 368 (384)
T ss_dssp CCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred CCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh
Confidence 999999864 3 58999999999999999987554
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.6e-29 Score=252.92 Aligned_cols=193 Identities=19% Similarity=0.233 Sum_probs=132.0
Q ss_pred CCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccCCCcceeeeeccCCC------cc--
Q 037488 428 GFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRHRNLIKIISSCSNDD------FK-- 498 (628)
Q Consensus 428 ~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------~~-- 498 (628)
.|...++||+|+||+||+|+. .+|+.||||+++.... .+.+|++++++++|||||+++++|.... ..
T Consensus 21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~----~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~l 96 (350)
T d1q5ka_ 21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL 96 (350)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS----SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEE
T ss_pred CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch----HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEE
Confidence 578889999999999999997 6799999999975432 2347999999999999999988763210 00
Q ss_pred --------------------------------------------------------------------cccccccccccc
Q 037488 499 --------------------------------------------------------------------ADFGMAKPLLKE 510 (628)
Q Consensus 499 --------------------------------------------------------------------~DFGla~~~~~~ 510 (628)
+|||+|+.....
T Consensus 97 v~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~ 176 (350)
T d1q5ka_ 97 VLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 176 (350)
T ss_dssp EEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTT
T ss_pred EEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccchhhccCC
Confidence 499999876443
Q ss_pred CcccccccccccccccCcccccc-CccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCc---c----c
Q 037488 511 DQSLIQTQTLATIGYMAPEYGRE-GRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPIS---V----M 582 (628)
Q Consensus 511 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~---~----~ 582 (628)
. ...+.+||..|+|||.+.+ ..|+.++||||+||++|||++|++||...... ..+....+...... . .
T Consensus 177 ~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~-~~l~~i~~~~g~~~~~~~~~~~~ 252 (350)
T d1q5ka_ 177 E---PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGV-DQLVEIIKVLGTPTREQIREMNP 252 (350)
T ss_dssp S---CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHH-HHHHHHHHHHCCCCHHHHHHHCC
T ss_pred c---ccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHH-HHHHHHHHHhCCChHHhhhhhcc
Confidence 2 2245689999999998775 46899999999999999999999999753221 11111111100000 0 0
Q ss_pred eeecccccC--CcccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 583 KVVDAHLLS--QEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 583 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
...+..... ............++++.+|+.+||+.||++|||+.|+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~ 300 (350)
T d1q5ka_ 253 NYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEA 300 (350)
T ss_dssp ---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred chhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 000000000 0000111223456779999999999999999998764
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Probab=99.95 E-value=2.2e-28 Score=245.28 Aligned_cols=196 Identities=16% Similarity=0.173 Sum_probs=136.7
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhccc-CCCcceeeeeccCCCcc------
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIR-HRNLIKIISSCSNDDFK------ 498 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~------ 498 (628)
++|+..+.||+|+||+||+|+. .+|+.||||+++... .+++.+|+++|++++ ||||+++++++......
T Consensus 35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~ 111 (328)
T d3bqca1 35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF 111 (328)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEE
T ss_pred cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH---HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEE
Confidence 5799999999999999999997 679999999997543 356789999999995 99999999987532110
Q ss_pred ------------------------------------------------------------ccccccccccccCccccccc
Q 037488 499 ------------------------------------------------------------ADFGMAKPLLKEDQSLIQTQ 518 (628)
Q Consensus 499 ------------------------------------------------------------~DFGla~~~~~~~~~~~~~~ 518 (628)
+|||+|+...... ....
T Consensus 112 e~~~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~---~~~~ 188 (328)
T d3bqca1 112 EHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ---EYNV 188 (328)
T ss_dssp ECCCSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTC---CCCS
T ss_pred eecCCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceeccCCC---cccc
Confidence 4999998764432 2355
Q ss_pred ccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHH------------hh-cCC--ccc
Q 037488 519 TLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVN------------DL-LPI--SVM 582 (628)
Q Consensus 519 ~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~------------~~-~~~--~~~ 582 (628)
.+||+.|+|||++.+.. |+.++||||+||++|||++|+.||............... .. ... ...
T Consensus 189 ~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~ 268 (328)
T d3bqca1 189 RVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFN 268 (328)
T ss_dssp CCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGG
T ss_pred cccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccc
Confidence 68999999999988754 799999999999999999999999653321111111110 00 000 000
Q ss_pred eeecccccCC--cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 583 KVVDAHLLSQ--EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 583 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......... ..........+++++++|+.+||+.||++|||++|+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~ 316 (328)
T d3bqca1 269 DILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREA 316 (328)
T ss_dssp GTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred hhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 0000000000 001111223456789999999999999999998764
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.9e-29 Score=247.99 Aligned_cols=181 Identities=20% Similarity=0.289 Sum_probs=133.1
Q ss_pred cCCCcccccccCCccEEEEEEe----cCCcEEEEEEeecc----chhHHHHHHHHHHHhhcccC-CCcceeeeeccCCCc
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI----HYGMEVAVKVFDLQ----YREAFKNFDIECDMMKHIRH-RNLIKIISSCSNDDF 497 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~----~~~~~vavK~~~~~----~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~ 497 (628)
++|+..+.||+|+||+||+|+. .+|+.||||+++.. .....+.+.+|++++++++| |||+++++++.+...
T Consensus 24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~ 103 (322)
T d1vzoa_ 24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 103 (322)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence 5699999999999999999975 25889999998643 22334668899999999977 899999988754332
Q ss_pred c------------------------------------------------------------------ccccccccccccC
Q 037488 498 K------------------------------------------------------------------ADFGMAKPLLKED 511 (628)
Q Consensus 498 ~------------------------------------------------------------------~DFGla~~~~~~~ 511 (628)
. +|||+|+.+....
T Consensus 104 ~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~ 183 (322)
T d1vzoa_ 104 LHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADE 183 (322)
T ss_dssp EEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGG
T ss_pred eeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccchhhhcccc
Confidence 1 4999998764332
Q ss_pred cccccccccccccccCccccccC--ccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecccc
Q 037488 512 QSLIQTQTLATIGYMAPEYGREG--RVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDAHL 589 (628)
Q Consensus 512 ~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (628)
. ....+..||+.|+|||.+.+. .++.++||||+||++|||+||+.||........ .........
T Consensus 184 ~-~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~-~~~i~~~~~------------ 249 (322)
T d1vzoa_ 184 T-ERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNS-QAEISRRIL------------ 249 (322)
T ss_dssp G-GGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCC-HHHHHHHHH------------
T ss_pred c-ccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHhcc------------
Confidence 2 223456799999999998765 368899999999999999999999976543322 111111110
Q ss_pred cCCcccchhchhhhHHHHHHHhhcccCCCcccCCCC
Q 037488 590 LSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNA 625 (628)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~ 625 (628)
...+..+..+++++.+++.+||+.||++|||+
T Consensus 250 ----~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~ 281 (322)
T d1vzoa_ 250 ----KSEPPYPQEMSALAKDLIQRLLMKDPKKRLGC 281 (322)
T ss_dssp ----HCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred ----cCCCCCcccCCHHHHHHHHHHcccCHHHcCCC
Confidence 01112334567789999999999999999974
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.94 E-value=3.1e-28 Score=239.49 Aligned_cols=186 Identities=11% Similarity=0.046 Sum_probs=133.4
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhcccC-CCcceeeeeccCCCcc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIRH-RNLIKIISSCSNDDFK----- 498 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~~----- 498 (628)
.++|...+.||+|+||+||+|+. .+|+.||||++.... ....+.+|+++++.++| +|++.+++++..+...
T Consensus 4 g~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme 81 (293)
T d1csna_ 4 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 81 (293)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred CCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc--CcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEE
Confidence 36799999999999999999997 679999999986532 22346788999999865 8999988776543211
Q ss_pred ------------------------------------------------------------------ccccccccccccCc
Q 037488 499 ------------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 499 ------------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
+|||+|+.......
T Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~ 161 (293)
T d1csna_ 82 LLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVT 161 (293)
T ss_dssp CCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTT
T ss_pred ecCCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEcccCcc
Confidence 49999997643221
Q ss_pred c-----cccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCCccceeecc
Q 037488 513 S-----LIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPISVMKVVDA 587 (628)
Q Consensus 513 ~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (628)
. ....+.+||+.|||||++.+..|+.++||||+||++|||+||+.||.+........ ..... .+.
T Consensus 162 ~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~--~~~~i--------~~~ 231 (293)
T d1csna_ 162 KQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQ--KYERI--------GEK 231 (293)
T ss_dssp CCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHH--HHHHH--------HHH
T ss_pred ccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHH--HHHHH--------Hhc
Confidence 1 12234579999999999999999999999999999999999999997643322111 10000 000
Q ss_pred cccCCcccchhchhhhHHHHHHHhhcccCCCcccCCCCC
Q 037488 588 HLLSQEDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAK 626 (628)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ 626 (628)
... .........+|+++.+++..|++.+|++||+++
T Consensus 232 ~~~---~~~~~l~~~~p~~l~~ii~~~~~~~~~~rP~y~ 267 (293)
T d1csna_ 232 KQS---TPLRELCAGFPEEFYKYMHYARNLAFDATPDYD 267 (293)
T ss_dssp HHH---SCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHH
T ss_pred cCC---CChHHhcCCCCHHHHHHHHHHhcCCcccCcCHH
Confidence 000 001112234667899999999999999999854
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=1.7e-25 Score=221.96 Aligned_cols=267 Identities=24% Similarity=0.311 Sum_probs=199.7
Q ss_pred CCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccc
Q 037488 59 LSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSME 138 (628)
Q Consensus 59 L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~ 138 (628)
++.++=+++.++.+ |..+. +++++|+|++|+|+.+++. .|.++++|++|++++|.+.
T Consensus 12 ~~~~~C~~~~L~~l-P~~l~--~~l~~L~Ls~N~i~~l~~~-----~f~~l~~L~~L~l~~n~~~--------------- 68 (305)
T d1xkua_ 12 LRVVQCSDLGLEKV-PKDLP--PDTALLDLQNNKITEIKDG-----DFKNLKNLHTLILINNKIS--------------- 68 (305)
T ss_dssp TTEEECTTSCCCSC-CCSCC--TTCCEEECCSSCCCCBCTT-----TTTTCTTCCEEECCSSCCC---------------
T ss_pred CCEEEecCCCCCcc-CCCCC--CCCCEEECcCCcCCCcChh-----Hhhcccccccccccccccc---------------
Confidence 34455555555544 22332 3555666666655554431 3455555555555555554
Q ss_pred eeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCc
Q 037488 139 IFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNK 218 (628)
Q Consensus 139 ~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 218 (628)
...|..|.++++|+.|++++|+++. +|.. ....+..|++++|.+.+..+..+.....+..++...|.
T Consensus 69 ----------~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~ 135 (305)
T d1xkua_ 69 ----------KISPGAFAPLVKLERLYLSKNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 135 (305)
T ss_dssp ----------CBCTTTTTTCTTCCEEECCSSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred ----------ccchhhhhCCCccCEecccCCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhcccccccccccccc
Confidence 4445567778888888888888874 4443 23578888888888887666667777788888888775
Q ss_pred Cc--ccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCcc
Q 037488 219 LS--GFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPI 296 (628)
Q Consensus 219 l~--~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 296 (628)
.. ...+..+..+++|+.+++++|.+..+|..+ .++|++|++++|..+...+..|..++.++.|++++|.+++..+.
T Consensus 136 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~ 213 (305)
T d1xkua_ 136 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 213 (305)
T ss_dssp CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred ccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccc
Confidence 43 334557888899999999999999888765 57899999999999888888899999999999999999988888
Q ss_pred ccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhh------hcCCCCCEEEccCCccee
Q 037488 297 TIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISL------EKLLDLKDINVSFNKLEG 364 (628)
Q Consensus 297 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~------~~l~~L~~l~l~~N~l~~ 364 (628)
.+..+++|++|+|++|+++ .+|.++..+++|+.|++++|+|+.+....| ..+.+|+.|++++|++..
T Consensus 214 ~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~ 286 (305)
T d1xkua_ 214 SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286 (305)
T ss_dssp TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred cccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence 8999999999999999998 567889999999999999999987654443 456789999999998863
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.6e-28 Score=246.07 Aligned_cols=197 Identities=21% Similarity=0.188 Sum_probs=132.2
Q ss_pred hcCCCcccccccCCccEEEEEEe-cCCcEEEEEEeecc--chhHHHHHHHHHHHhhcccCCCcceeeeeccCCCc-----
Q 037488 426 TNGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQ--YREAFKNFDIECDMMKHIRHRNLIKIISSCSNDDF----- 497 (628)
Q Consensus 426 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 497 (628)
+++|+..+.||+|+||+||+|+. .+|+.||||+++.. .....+.+.+|++++++++|||||++++++.....
T Consensus 17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~ 96 (348)
T d2gfsa1 17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 96 (348)
T ss_dssp ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence 57899999999999999999986 67999999999753 23445678999999999999999999988743210
Q ss_pred -c----------------------------------------------------------------ccccccccccccCc
Q 037488 498 -K----------------------------------------------------------------ADFGMAKPLLKEDQ 512 (628)
Q Consensus 498 -~----------------------------------------------------------------~DFGla~~~~~~~~ 512 (628)
. +|||+|......
T Consensus 97 ~~~i~~~~~gg~L~~~~~~~~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~~-- 174 (348)
T d2gfsa1 97 DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-- 174 (348)
T ss_dssp CCEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC----CCTGG--
T ss_pred eEEEEEeecCCchhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccchhcccCcc--
Confidence 0 399998754322
Q ss_pred ccccccccccccccCccccccCc-cCcccchhhHhHHHHHHhhCCCCCCcccCCCccHHHHHHhhcCC--ccce-e----
Q 037488 513 SLIQTQTLATIGYMAPEYGREGR-VSTNGDVYSFGIMLIETFTRKKPTDEIFSGEMTLKHWVNDLLPI--SVMK-V---- 584 (628)
Q Consensus 513 ~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~~~~~~~~~~~~~~--~~~~-~---- 584 (628)
..+..||+.|+|||+..+.. ++.++||||+||++|||++|++||.+.... ............. .... .
T Consensus 175 ---~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~ 250 (348)
T d2gfsa1 175 ---MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHI-DQLKLILRLVGTPGAELLKKISSES 250 (348)
T ss_dssp ---GSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCCHHHHTTCCCHH
T ss_pred ---cccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHH-HHHHHHHHhcCCCChHHhhhccchh
Confidence 24567999999999877655 689999999999999999999999753211 1111111111000 0000 0
Q ss_pred ---ecccccCCcc-cchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 585 ---VDAHLLSQED-KHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 585 ---~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.......... .........++++++|+.+||+.||++|||+.|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~el 298 (348)
T d2gfsa1 251 ARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQA 298 (348)
T ss_dssp HHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred hhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHH
Confidence 0000000000 0001122456779999999999999999998764
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.1e-26 Score=236.68 Aligned_cols=196 Identities=13% Similarity=0.129 Sum_probs=131.3
Q ss_pred cCCCcccccccCCccEEEEEEe-cCCcEEEEEEeeccchhHHHHHHHHHHHhhccc-----------CCCcceeeeeccC
Q 037488 427 NGFSENNLIDRGGIGYVYKRRI-HYGMEVAVKVFDLQYREAFKNFDIECDMMKHIR-----------HRNLIKIISSCSN 494 (628)
Q Consensus 427 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~l~~~~~~ 494 (628)
++|...+.||+|+||+||+|+. .+|+.||||+++... ...+.+.+|+++++.++ |+|||++++++..
T Consensus 13 ~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~-~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~ 91 (362)
T d1q8ya_ 13 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH 91 (362)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred CcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc-cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeee
Confidence 4599999999999999999987 679999999997543 23456788999988886 4778888877643
Q ss_pred CCcc----------------------------------------------------------------------------
Q 037488 495 DDFK---------------------------------------------------------------------------- 498 (628)
Q Consensus 495 ~~~~---------------------------------------------------------------------------- 498 (628)
....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~ 171 (362)
T d1q8ya_ 92 KGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQI 171 (362)
T ss_dssp EETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEE
T ss_pred ccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCccccccee
Confidence 2100
Q ss_pred --ccccccccccccCcccccccccccccccCccccccCccCcccchhhHhHHHHHHhhCCCCCCcccCCC-c----cHHH
Q 037488 499 --ADFGMAKPLLKEDQSLIQTQTLATIGYMAPEYGREGRVSTNGDVYSFGIMLIETFTRKKPTDEIFSGE-M----TLKH 571 (628)
Q Consensus 499 --~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DVwS~Gvvl~e~ltg~~p~~~~~~~~-~----~~~~ 571 (628)
+|||.|+..... ....+||+.|+|||++.+..|+.++||||+||+++||++|+.||....... . ....
T Consensus 172 kl~dfg~s~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~ 246 (362)
T d1q8ya_ 172 KIADLGNACWYDEH-----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQ 246 (362)
T ss_dssp EECCCTTCEETTBC-----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHH
T ss_pred eEeecccccccccc-----cccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHH
Confidence 388888754322 245679999999999999999999999999999999999999997532211 0 1111
Q ss_pred HHHhhc--CCcc-------ceeec-----ccccCC--------cccchhchhhhHHHHHHHhhcccCCCcccCCCCCCC
Q 037488 572 WVNDLL--PISV-------MKVVD-----AHLLSQ--------EDKHFVIKGQCVSFVFNLAMKCTVESPEERVNAKEI 628 (628)
Q Consensus 572 ~~~~~~--~~~~-------~~~~~-----~~~~~~--------~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~ev 628 (628)
.+.... +... ....+ ...... .......+...++++++|+.+||+.||++||||+|+
T Consensus 247 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~ 325 (362)
T d1q8ya_ 247 IIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGL 325 (362)
T ss_dssp HHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHH
T ss_pred HHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHH
Confidence 111100 0000 00000 000000 001122334567889999999999999999998764
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.2e-24 Score=213.24 Aligned_cols=209 Identities=27% Similarity=0.292 Sum_probs=164.4
Q ss_pred CCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEcc-CCcCcccCCCCccCCCCCcEEE
Q 037488 159 TNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLG-SNKLSGFVPASFGNLTNLRSLH 237 (628)
Q Consensus 159 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~ 237 (628)
+++++|+|++|+|+...+.+|.++++|++|++++|++....+..+..+..+..++.. .|.+....+..|.++++|++|+
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~ 111 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence 456777888888776555667778888888888888877777777777777777653 5566666677788888888888
Q ss_pred ccCCcCCcCCC-CccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcc
Q 037488 238 LGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQG 316 (628)
Q Consensus 238 L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 316 (628)
+++|.+..++. .+....+|+.+++++|.+++..+..|..+++|+.|++++|++++..+..|.++++|+++++++|++++
T Consensus 112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~ 191 (284)
T d1ozna_ 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (284)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence 88888877644 44457778888888888887777778888888888888888887777888888888888888888888
Q ss_pred cCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceecCC
Q 037488 317 SIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGEIP 367 (628)
Q Consensus 317 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~p 367 (628)
..|..|..+++|+.|++++|.+.++.+..|..+++|++|++++|++.+..+
T Consensus 192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~ 242 (284)
T d1ozna_ 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (284)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence 788888888888888888888888888888888888888888888886654
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1e-23 Score=204.26 Aligned_cols=204 Identities=24% Similarity=0.197 Sum_probs=173.8
Q ss_pred cCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcE
Q 037488 156 SNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRS 235 (628)
Q Consensus 156 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 235 (628)
...+.+.+++.+++.++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|+|+.+. .++.+++|++
T Consensus 7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~ 81 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGT 81 (266)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCE
T ss_pred cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--cccccccccc
Confidence 45566777888888888 4665553 57889999999998777778888999999999999988643 3577889999
Q ss_pred EEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCc
Q 037488 236 LHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQ 315 (628)
Q Consensus 236 L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 315 (628)
|+|++|+++.++..+..+++|++|++++|.+.+..+..+..+.+++.|++++|.++...+..+..+++|+.+++++|+++
T Consensus 82 L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~ 161 (266)
T d1p9ag_ 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (266)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred cccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence 99999999988888888999999999999998888888889999999999999999888888888999999999999999
Q ss_pred ccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceec
Q 037488 316 GSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGE 365 (628)
Q Consensus 316 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~ 365 (628)
+..++.|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++.+.
T Consensus 162 ~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd 210 (266)
T d1p9ag_ 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (266)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence 888888999999999999999998 5566677889999999999988754
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=8.1e-24 Score=205.03 Aligned_cols=200 Identities=25% Similarity=0.249 Sum_probs=165.3
Q ss_pred CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCC
Q 037488 32 LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKY 111 (628)
Q Consensus 32 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~ 111 (628)
...+.+.+.+++.++. +|..+. ++|++|+|++|+|+++.+++|.++++|++|+|++|+|+.++ .+..+++
T Consensus 9 ~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-------~~~~l~~ 78 (266)
T d1p9ag_ 9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-------VDGTLPV 78 (266)
T ss_dssp STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-------CCSCCTT
T ss_pred cCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc-------ccccccc
Confidence 4456667888888885 565442 57999999999999998899999999999999999998653 3567889
Q ss_pred CcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecc
Q 037488 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLE 191 (628)
Q Consensus 112 L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 191 (628)
|++|++++|+++.. +..+..+++|+.|++++|.+.+..+..+..+.++++|+++
T Consensus 79 L~~L~Ls~N~l~~~--------------------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~ 132 (266)
T d1p9ag_ 79 LGTLDLSHNQLQSL--------------------------PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132 (266)
T ss_dssp CCEEECCSSCCSSC--------------------------CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT
T ss_pred cccccccccccccc--------------------------ccccccccccccccccccccceeecccccccccccccccc
Confidence 99999999987632 3345667888899999998887777778888899999999
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCc
Q 037488 192 YNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFT 267 (628)
Q Consensus 192 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~ 267 (628)
+|.+....+..+..+++++.|++++|++++..+..|..+++|++|+|++|+|+.+|.+++.+++|++|+|++|.+.
T Consensus 133 ~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence 9988877777788888999999999999888888888899999999999999989888888888888888888654
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=9.3e-25 Score=214.11 Aligned_cols=235 Identities=23% Similarity=0.281 Sum_probs=149.0
Q ss_pred CCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcE
Q 037488 35 LEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKY 114 (628)
Q Consensus 35 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~ 114 (628)
+++|+|++|+|+++.+..|.++++|++|++++|++..+.+..+.++..++.+...
T Consensus 34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~------------------------- 88 (284)
T d1ozna_ 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS------------------------- 88 (284)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-------------------------
T ss_pred CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccc-------------------------
Confidence 3444555555544444445555555555555555555555555555555554432
Q ss_pred EEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCc
Q 037488 115 FSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQ 194 (628)
Q Consensus 115 L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 194 (628)
..|.+..+.+..|..++ .|+.+++++|.+....+..+...++|+.+++++|++++..+..|..+++|+.|++++|+
T Consensus 89 ---~~~~~~~l~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~ 164 (284)
T d1ozna_ 89 ---DNAQLRSVDPATFHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (284)
T ss_dssp ---SCTTCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---cccccccccchhhcccc-cCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc
Confidence 23333333344444433 34444444444444445556667788888888888887666778888888888888888
Q ss_pred ccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCC-CccCCCCCcEEEcCCCCCcCCCCCc
Q 037488 195 LEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILYLNLSSNFFTGPLPLE 273 (628)
Q Consensus 195 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~ 273 (628)
+.+..+..|.++++|+.+++++|++++..|..|..+++|++|++++|++.+++. .+..+++|++|++++|.+...-+.
T Consensus 165 l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~- 243 (284)
T d1ozna_ 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA- 243 (284)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-
T ss_pred ccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc-
Confidence 887777788888888888888888888888888888888888888888888764 456788888888888887643221
Q ss_pred ccCCccccEEEcCCCcCCCCCccccC
Q 037488 274 IGNLKVLIKIDLSMNNFSGVIPITIG 299 (628)
Q Consensus 274 ~~~l~~L~~L~Ls~N~l~~~~p~~~~ 299 (628)
-.-...++.+....+++....|..+.
T Consensus 244 ~~l~~~l~~~~~~~~~~~C~~p~~l~ 269 (284)
T d1ozna_ 244 RPLWAWLQKFRGSSSEVPCSLPQRLA 269 (284)
T ss_dssp HHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred hHHHHHHHhCcCCCCceEeCCchHHc
Confidence 11122345555555666655565544
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.81 E-value=2e-17 Score=166.57 Aligned_cols=74 Identities=27% Similarity=0.339 Sum_probs=52.3
Q ss_pred cEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCC
Q 037488 281 IKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFN 360 (628)
Q Consensus 281 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N 360 (628)
...++..+.+.+ ....+++|++|++++|+++ .+|. .+++|+.|++++|+|+.+ |. .+.+|++|++++|
T Consensus 267 ~~~~~~~~~~~~----~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~~l-~~---~~~~L~~L~L~~N 334 (353)
T d1jl5a_ 267 YYLNASSNEIRS----LCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYN 334 (353)
T ss_dssp CEEECCSSCCSE----ECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSS
T ss_pred cccccccCcccc----ccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCCcc-cc---ccCCCCEEECcCC
Confidence 334455554432 2234678999999999987 5664 357899999999999854 43 2468999999999
Q ss_pred cceecCC
Q 037488 361 KLEGEIP 367 (628)
Q Consensus 361 ~l~~~~p 367 (628)
+++ .+|
T Consensus 335 ~L~-~lp 340 (353)
T d1jl5a_ 335 PLR-EFP 340 (353)
T ss_dssp CCS-SCC
T ss_pred cCC-CCC
Confidence 987 444
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.80 E-value=2.6e-17 Score=165.70 Aligned_cols=290 Identities=27% Similarity=0.351 Sum_probs=160.0
Q ss_pred CCCEEecCccCC-------CCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccc
Q 037488 21 TLNSLYLQNVQL-------QNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYL 93 (628)
Q Consensus 21 ~L~~L~l~~n~l-------~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l 93 (628)
+++.|+|+++.+ ++|++|+|++|+|+ .+|.. ..+|+.|++++|+++.+. + + .+.|++|++++|.+
T Consensus 39 ~l~~LdLs~~~L~~lp~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~-~-l--p~~L~~L~L~~n~l 110 (353)
T d1jl5a_ 39 QAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALS-D-L--PPLLEYLGVSNNQL 110 (353)
T ss_dssp TCSEEECTTSCCSCCCSCCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCC-S-C--CTTCCEEECCSSCC
T ss_pred CCCEEEeCCCCCCCCCCCCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhh-h-h--cccccccccccccc
Confidence 344555555442 34566666666665 33433 346666777777666432 1 1 13466777777766
Q ss_pred cCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCc
Q 037488 94 TSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNG 173 (628)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 173 (628)
+.++. +..+++|++|++++|.+...... ...+..+.+..+... ....+..++.++.+++++|....
T Consensus 111 ~~lp~-------~~~l~~L~~L~l~~~~~~~~~~~-----~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~ 176 (353)
T d1jl5a_ 111 EKLPE-------LQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK 176 (353)
T ss_dssp SSCCC-------CTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred ccccc-------hhhhccceeeccccccccccccc-----cccccchhhcccccc--ccccccccccceecccccccccc
Confidence 65432 34566677777777666543221 112333333333222 23345566667777777766553
Q ss_pred cccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCC
Q 037488 174 SIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNL 253 (628)
Q Consensus 174 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l 253 (628)
. +.. ....+.+...++.+. .++ .+..++.|+.+++++|.... .+. ...++..+.+..+.+...+.....+
T Consensus 177 ~-~~~---~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~~~~~~~l 246 (353)
T d1jl5a_ 177 L-PDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPELPQSL 246 (353)
T ss_dssp C-CCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred c-ccc---ccccccccccccccc-ccc-cccccccccccccccccccc-ccc---ccccccccccccccccccccccccc
Confidence 2 211 122334444444433 222 34556666667766665543 222 2334555556655555433221110
Q ss_pred -----------------CCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcc
Q 037488 254 -----------------KDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQG 316 (628)
Q Consensus 254 -----------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 316 (628)
......++..+.+.+ ....+++|++|++++|+++ .+|. .+++|+.|++++|+++
T Consensus 247 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~----~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~- 317 (353)
T d1jl5a_ 247 TFLDVSENIFSGLSELPPNLYYLNASSNEIRS----LCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA- 317 (353)
T ss_dssp CEEECCSSCCSEESCCCTTCCEEECCSSCCSE----ECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-
T ss_pred cccccccccccccccccchhcccccccCcccc----ccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-
Confidence 122334444444332 2234678999999999998 4554 3678999999999998
Q ss_pred cCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEcc
Q 037488 317 SIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVS 358 (628)
Q Consensus 317 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~ 358 (628)
.+|. .+++|+.|++++|+++. +|.. ...|+.|.+.
T Consensus 318 ~l~~---~~~~L~~L~L~~N~L~~-lp~~---~~~L~~L~~~ 352 (353)
T d1jl5a_ 318 EVPE---LPQNLKQLHVEYNPLRE-FPDI---PESVEDLRMN 352 (353)
T ss_dssp CCCC---CCTTCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred cccc---ccCCCCEEECcCCcCCC-CCcc---ccccCeeECc
Confidence 5664 35689999999999985 4432 2356666553
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=6.1e-19 Score=167.88 Aligned_cols=196 Identities=19% Similarity=0.192 Sum_probs=101.1
Q ss_pred CCCEEEccCCcceecCCccccCCCCCCEEeccCCcccc-cCccccCCCCCCCEEEccC-ccccCCCCCCcccccccCCCC
Q 037488 34 NLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYG-FIPNTFGNLRNLNRLGLND-NYLTSSTPKLNFLSSLSNCKY 111 (628)
Q Consensus 34 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~~l~~ 111 (628)
++++|+|++|+|+.+.+..|.++++|++|++++|.+.. +.+.+|.+++++++|.+.. |.+....+ ..|.++++
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~-----~~~~~l~~ 104 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-----EAFQNLPN 104 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT-----TSEECCTT
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccc-----cccccccc
Confidence 45555666666655555566666666666666666544 3344566666666666543 44444332 23556666
Q ss_pred CcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCC-CCCEeec
Q 037488 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQ-KLQLLNL 190 (628)
Q Consensus 112 L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L 190 (628)
|+++++++|.+....+..+ +..+..+..+..+++.+....+..+..++ .++.|++
T Consensus 105 L~~l~l~~~~l~~~~~~~~------------------------~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l 160 (242)
T d1xwdc1 105 LQYLLISNTGIKHLPDVHK------------------------IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 160 (242)
T ss_dssp CCEEEEESCCCCSCCCCTT------------------------TCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred ccccccchhhhcccccccc------------------------cccccccccccccccccccccccccccccccceeeec
Confidence 6666666666553322211 22333444444444444433333444432 4555666
Q ss_pred ccCcccccCCccccCCCCCCEE-EccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCC-ccCCCCCcEE
Q 037488 191 EYNQLEGSIPDDLCRLAALFQL-DLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPST-LLNLKDILYL 259 (628)
Q Consensus 191 ~~n~l~~~~p~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L 259 (628)
++|+++...+.. ...+++..+ ++++|+++...+..|.++++|+.|++++|+|+.+|.. +.++++|+.+
T Consensus 161 ~~n~l~~i~~~~-~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l 230 (242)
T d1xwdc1 161 NKNGIQEIHNCA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 230 (242)
T ss_dssp CSSCCCEECTTT-TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred cccccccccccc-ccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence 666665433322 233343333 3455556555455566666666666666666666543 3334444333
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=8.4e-19 Score=166.91 Aligned_cols=200 Identities=19% Similarity=0.178 Sum_probs=125.7
Q ss_pred CCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccC-CccccCCCCCCEEEcc-CCcCcccCCCCccCCCCCcEE
Q 037488 159 TNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSI-PDDLCRLAALFQLDLG-SNKLSGFVPASFGNLTNLRSL 236 (628)
Q Consensus 159 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L 236 (628)
++++.|++++|+++...+.+|.++++|++|++++|.+...+ +..|.+++.++++.+. .|.+....+..|.++++|+.|
T Consensus 29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l 108 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 108 (242)
T ss_dssp SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence 35667777777776544455677777777777777665433 3456667777777654 356666666667777777777
Q ss_pred EccCCcCCcCCC--CccCCCCCcEEEcCCCCCcCCCCCcccCCc-cccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCc
Q 037488 237 HLGSNQITSIPS--TLLNLKDILYLNLSSNFFTGPLPLEIGNLK-VLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNR 313 (628)
Q Consensus 237 ~L~~n~l~~lp~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 313 (628)
++++|.+...+. .+..+..+..+..+++.+....+..|.+++ .++.|++++|+++...+..+.....++.+++++|+
T Consensus 109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~ 188 (242)
T d1xwdc1 109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188 (242)
T ss_dssp EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTT
T ss_pred ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccc
Confidence 777777766543 222344555555566666655555665553 56777777777775544444333223334567777
Q ss_pred CcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEcc
Q 037488 314 LQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVS 358 (628)
Q Consensus 314 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~ 358 (628)
++...+..|.++++|+.|++++|+++.+.+..|..+++|+.+++.
T Consensus 189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~ 233 (242)
T d1xwdc1 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233 (242)
T ss_dssp CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence 775555567778888888888888876666666666666655543
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.77 E-value=2.6e-18 Score=161.67 Aligned_cols=202 Identities=23% Similarity=0.324 Sum_probs=151.2
Q ss_pred eccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCc
Q 037488 141 WMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLS 220 (628)
Q Consensus 141 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 220 (628)
++..+.+++.. .+..+.+|+.|++.+|.++. ++ .+..+++|++|++++|++.+.. .+..+++++++++++|.++
T Consensus 25 ~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~ 98 (227)
T d1h6ua2 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK 98 (227)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc
Confidence 34445554432 34566788888888888874 33 4778888888888888887543 3788888888888888876
Q ss_pred ccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCC
Q 037488 221 GFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGY 300 (628)
Q Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 300 (628)
.. ..+..+++|+.++++++....++. +...+.+..+.++.+.+.... .+..+++|+.|++++|.+.... .++.
T Consensus 99 ~i--~~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~ 171 (227)
T d1h6ua2 99 NV--SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLAN 171 (227)
T ss_dssp CC--GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTT
T ss_pred cc--ccccccccccccccccccccccch-hccccchhhhhchhhhhchhh--hhccccccccccccccccccch--hhcc
Confidence 43 357788888888888888776543 455678888888888776433 3677788899999988886433 3678
Q ss_pred CCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccC
Q 037488 301 LKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSF 359 (628)
Q Consensus 301 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~ 359 (628)
+++|++|++++|++++ ++ .++.+++|+.|++++|+++++.| +..+++|+.|++++
T Consensus 172 l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 172 LSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226 (227)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred cccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence 8899999999998874 43 37888999999999999887543 77889999998863
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.77 E-value=3.4e-18 Score=160.78 Aligned_cols=186 Identities=25% Similarity=0.407 Sum_probs=114.8
Q ss_pred CCCCCEEEccCCcceecCCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCccccCCCCCCcccccccCCCC
Q 037488 32 LQNLEELLLWGNNFSGTIPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKY 111 (628)
Q Consensus 32 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~ 111 (628)
+.+|++|++++|.|+.. + .+..+++|++|++++|+++++.+ |.++++|+.+++++|.++.+ ..+.++++
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i-------~~l~~l~~ 108 (227)
T d1h6ua2 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-------SAIAGLQS 108 (227)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-------GGGTTCTT
T ss_pred cCCcCEEECCCCCCCcc-h-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc-------cccccccc
Confidence 44566666666666643 2 36677777777777777776543 77777777777777776654 24566777
Q ss_pred CcEEEcccCCCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecc
Q 037488 112 LKYFSFSNNSLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLE 191 (628)
Q Consensus 112 L~~L~l~~n~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 191 (628)
|+.++++++...+.. .+...+.+..+.++.+.+.... .+..+++|+.|+++
T Consensus 109 L~~l~l~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~ 159 (227)
T d1h6ua2 109 IKTLDLTSTQITDVT---------------------------PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIG 159 (227)
T ss_dssp CCEEECTTSCCCCCG---------------------------GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECC
T ss_pred ccccccccccccccc---------------------------hhccccchhhhhchhhhhchhh--hhcccccccccccc
Confidence 777777777655322 1333445555566665554322 24555666666666
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcC
Q 037488 192 YNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLS 262 (628)
Q Consensus 192 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~ 262 (628)
+|.+... ..+.++++|++|++++|++++.. .++.+++|+.|+|++|+++++++ +..+++|++|+++
T Consensus 160 ~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls 225 (227)
T d1h6ua2 160 NAQVSDL--TPLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT 225 (227)
T ss_dssp SSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred ccccccc--hhhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence 6665532 23566666666666666665432 25666677777777777666653 5566667776664
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.74 E-value=3.6e-18 Score=155.89 Aligned_cols=130 Identities=24% Similarity=0.308 Sum_probs=85.9
Q ss_pred cEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcC-CCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCC
Q 037488 234 RSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTG-PLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYN 312 (628)
Q Consensus 234 ~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n 312 (628)
++++.++++++++|..+. +++++|+|++|+|++ ..+..|.++++|+.|+|++|.+....+..+..+++|++|+|++|
T Consensus 11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N 88 (192)
T d1w8aa_ 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence 456666666666666553 466666666666654 33455666667777777777766666666666667777777777
Q ss_pred cCcccCChhhcCCCCCCEEECcCCcccccCchhhhcCCCCCEEEccCCcceec
Q 037488 313 RLQGSIPDSIGDLINLKSLDLSNNNLSGIIPISLEKLLDLKDINVSFNKLEGE 365 (628)
Q Consensus 313 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~ 365 (628)
++++..+++|.++++|+.|+|++|+|+++.+..|..+++|++++|++|++.+.
T Consensus 89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~ 141 (192)
T d1w8aa_ 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence 77666666666677777777777777666666666667777777777766543
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.74 E-value=1.3e-17 Score=154.47 Aligned_cols=163 Identities=25% Similarity=0.337 Sum_probs=85.2
Q ss_pred CCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcC
Q 037488 183 QKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLS 262 (628)
Q Consensus 183 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~ 262 (628)
.+|+.|++++|.+... + .+..+++|++|++++|++++.. .++.+++|+.|++++|+++.+| .+..+++|+.|+++
T Consensus 46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~ 120 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLE 120 (210)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECT
T ss_pred cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccccc-cccccccccccccc
Confidence 3444445554444422 1 2444455555555555554322 2344555555555555555544 24445555555555
Q ss_pred CCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccccC
Q 037488 263 SNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSGII 342 (628)
Q Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 342 (628)
+|.+... ..+..++.++.+++++|.++.. ..+..+++|+++++++|++++ +++ +.++++|+.|++++|.++.+
T Consensus 121 ~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~~l- 193 (210)
T d1h6ta2 121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISDL- 193 (210)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCBC-
T ss_pred ccccccc--cccccccccccccccccccccc--ccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCCCC-
Confidence 5554421 2345555566666666655432 234455666666666666653 222 56666666666666666543
Q ss_pred chhhhcCCCCCEEEcc
Q 037488 343 PISLEKLLDLKDINVS 358 (628)
Q Consensus 343 ~~~~~~l~~L~~l~l~ 358 (628)
+ .+..+++|+.|+++
T Consensus 194 ~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 194 R-ALAGLKNLDVLELF 208 (210)
T ss_dssp G-GGTTCTTCSEEEEE
T ss_pred h-hhcCCCCCCEEEcc
Confidence 2 36666666666665
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.74 E-value=1.4e-17 Score=154.21 Aligned_cols=180 Identities=26% Similarity=0.350 Sum_probs=141.1
Q ss_pred eccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCc
Q 037488 141 WMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLS 220 (628)
Q Consensus 141 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 220 (628)
.+..+.+++.++. ..+.+|+.|++++|.++.. + .+..+++|++|++++|++++.. .++.+++|++|++++|+++
T Consensus 30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~ 103 (210)
T d1h6ta2 30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK 103 (210)
T ss_dssp HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred HhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc
Confidence 3444555444332 3466888899999988753 3 3778899999999999988643 4678899999999999988
Q ss_pred ccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCC
Q 037488 221 GFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGY 300 (628)
Q Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 300 (628)
+. + .+..+++|+.|++++|.+..++ .+..++.++.+++++|.++.. ..+..+++|+.+++++|++++..+ +..
T Consensus 104 ~l-~-~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~~--l~~ 176 (210)
T d1h6ta2 104 DL-S-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG 176 (210)
T ss_dssp CG-G-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred cc-c-cccccccccccccccccccccc-ccccccccccccccccccccc--cccccccccccccccccccccccc--ccC
Confidence 64 3 5788899999999999888775 467788999999999988753 346788999999999999986433 778
Q ss_pred CCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcC
Q 037488 301 LKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSN 335 (628)
Q Consensus 301 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 335 (628)
+++|++|++++|+++. ++ .+.++++|+.|+|++
T Consensus 177 l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 177 LTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred CCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence 9999999999999974 54 588999999999874
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=2.7e-17 Score=150.95 Aligned_cols=162 Identities=30% Similarity=0.431 Sum_probs=98.9
Q ss_pred CCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEE
Q 037488 181 KLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLN 260 (628)
Q Consensus 181 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~ 260 (628)
.+.++++|++++|.+... +.++.+++|++|++++|++++..+ ++++++|++|++++|.+..++. +..++.|++|+
T Consensus 38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~ 112 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 112 (199)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc-ccccccccccc
Confidence 345555666666555532 235556666666666666654322 5666666666666666666553 55566666666
Q ss_pred cCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCcCcccCChhhcCCCCCCEEECcCCcccc
Q 037488 261 LSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNRLQGSIPDSIGDLINLKSLDLSNNNLSG 340 (628)
Q Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 340 (628)
+++|.+... ..+..+++|+.|++++|++.. ++ .+..+++|++|++.+|++++. + .++++++|+.|++++|++++
T Consensus 113 l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~ 186 (199)
T d2omxa2 113 LFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD 186 (199)
T ss_dssp CCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred ccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC
Confidence 666665532 235566777777777777653 22 356677777777777777643 2 36777777777777777765
Q ss_pred cCchhhhcCCCCCEE
Q 037488 341 IIPISLEKLLDLKDI 355 (628)
Q Consensus 341 ~~~~~~~~l~~L~~l 355 (628)
+ + .+.++++|+.|
T Consensus 187 i-~-~l~~L~~L~~L 199 (199)
T d2omxa2 187 I-S-VLAKLTNLESL 199 (199)
T ss_dssp C-G-GGGGCTTCSEE
T ss_pred C-c-cccCCCCCCcC
Confidence 3 2 46667777654
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.71 E-value=7.3e-18 Score=153.84 Aligned_cols=90 Identities=31% Similarity=0.408 Sum_probs=44.2
Q ss_pred ccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCc
Q 037488 155 ISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLR 234 (628)
Q Consensus 155 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 234 (628)
|.++++|+.|+|++|.+....+..+..+++|++|+|++|++....+..|.++++|++|+|++|+|+++.+++|..+++|+
T Consensus 50 f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~ 129 (192)
T d1w8aa_ 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccc
Confidence 44444555555555555444444444455555555555555444444444455555555555555444444444444444
Q ss_pred EEEccCCcCC
Q 037488 235 SLHLGSNQIT 244 (628)
Q Consensus 235 ~L~L~~n~l~ 244 (628)
+|+|++|.+.
T Consensus 130 ~l~L~~N~~~ 139 (192)
T d1w8aa_ 130 SLNLASNPFN 139 (192)
T ss_dssp EEECTTCCBC
T ss_pred cccccccccc
Confidence 4444444443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=8.9e-17 Score=147.42 Aligned_cols=176 Identities=27% Similarity=0.378 Sum_probs=132.0
Q ss_pred eccCCcccccCCccccCCCCCCEEEccCCcCCccccccccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCc
Q 037488 141 WMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLS 220 (628)
Q Consensus 141 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 220 (628)
.+..+.+++.++ ...+.+++.|++++|.++. ++ .+..+++|++|++++|++++.. .++++++|++|++++|.+.
T Consensus 24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~ 97 (199)
T d2omxa2 24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA 97 (199)
T ss_dssp HTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred HhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCcc--cccCCcccccccccccccc
Confidence 344555554332 2356788888888888874 33 3677888888888888887543 3788888888888888886
Q ss_pred ccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCC
Q 037488 221 GFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGY 300 (628)
Q Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 300 (628)
... .+.++++|+.|++++|.+..++ .+..+++|+.|++++|.+... +.+..+++|+.|++++|++++.. .++.
T Consensus 98 ~~~--~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~--~l~~ 170 (199)
T d2omxa2 98 DIT--PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK--PLAN 170 (199)
T ss_dssp CCG--GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG--GGTT
T ss_pred ccc--cccccccccccccccccccccc-ccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc--cccC
Confidence 532 4788888888888888887764 466788888999998888643 24778888999999999887643 3678
Q ss_pred CCCCCEEeCCCCcCcccCChhhcCCCCCCEE
Q 037488 301 LKDLQYLFLEYNRLQGSIPDSIGDLINLKSL 331 (628)
Q Consensus 301 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 331 (628)
+++|++|++++|+++. ++ .++.+++|++|
T Consensus 171 l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 171 LTTLERLDISSNKVSD-IS-VLAKLTNLESL 199 (199)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred CCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence 8999999999999874 43 47788888875
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.9e-19 Score=187.04 Aligned_cols=362 Identities=18% Similarity=0.151 Sum_probs=197.9
Q ss_pred CcccCCCcccCC-ChhccCCCCCCEEecCccCC---------------CCCCEEEccCCcceec----CCcccc-CCCCC
Q 037488 1 MAFSFNKLVGVV-PTTIFNVSTLNSLYLQNVQL---------------QNLEELLLWGNNFSGT----IPSFIF-NASKL 59 (628)
Q Consensus 1 l~ls~N~l~~~~-p~~~~~l~~L~~L~l~~n~l---------------~~L~~L~ls~N~l~~~----~p~~~~-~l~~L 59 (628)
||+++|+++... ...+..+++++.|+|++|.+ ++|++|||++|.|+.. +...+. ...+|
T Consensus 7 ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L 86 (460)
T d1z7xw1 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI 86 (460)
T ss_dssp EEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCC
T ss_pred EEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCC
Confidence 567777776532 33355667777777777653 3567777777666421 111121 23456
Q ss_pred CEEeccCCccccc----CccccCCCCCCCEEEccCccccCCCCCCcccccc-cCCCCCcEEEcccCCCCCCCchH----H
Q 037488 60 SRLELQMNSFYGF----IPNTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSL-SNCKYLKYFSFSNNSLDGILPRA----I 130 (628)
Q Consensus 60 ~~L~L~~N~l~~~----~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~----~ 130 (628)
++|+|++|+++.. ++.++..+++|++|++++|.++...... ....+ ...............+....-.. +
T Consensus 87 ~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (460)
T d1z7xw1 87 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL-LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 165 (460)
T ss_dssp CEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH-HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred CEEECCCCCccccccccccchhhccccccccccccccchhhhhhh-hhhcccccccccccccccccccchhhhccccccc
Confidence 7777777766542 2345566666777777766654311000 00000 01112222222222221110000 1
Q ss_pred hccccccceeeccCCcccccC----Cccc-cCCCCCCEEEccCCcCCcc----ccccccCCCCCCEeecccCcccc----
Q 037488 131 GNLSQSMEIFWMHSCNISGGI----PEEI-SNLTNLIAIYLGGNKLNGS----IPIALGKLQKLQLLNLEYNQLEG---- 197 (628)
Q Consensus 131 ~~l~~~l~~l~l~~n~~~~~~----~~~~-~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~---- 197 (628)
... ..++.+.++.+...... ...+ ..-.....+++..+.+... ....+...+.++.+++++|++..
T Consensus 166 ~~~-~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~ 244 (460)
T d1z7xw1 166 RAK-PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 244 (460)
T ss_dssp HHC-TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred ccc-cccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccc
Confidence 111 13445555554433210 0011 1223455677766655421 11224456778888888876532
Q ss_pred -cCCccccCCCCCCEEEccCCcCcccC----CCCccCCCCCcEEEccCCcCCc-----CCCCc-cCCCCCcEEEcCCCCC
Q 037488 198 -SIPDDLCRLAALFQLDLGSNKLSGFV----PASFGNLTNLRSLHLGSNQITS-----IPSTL-LNLKDILYLNLSSNFF 266 (628)
Q Consensus 198 -~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~-----lp~~~-~~l~~L~~L~l~~n~l 266 (628)
..+........++.+++++|.+.... ...+...+.++.+++++|.++. +...+ .....|+.+++++|.+
T Consensus 245 ~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l 324 (460)
T d1z7xw1 245 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 324 (460)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred hhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccch
Confidence 12223345667888888888775321 1234556778888888888753 11111 1235788888888887
Q ss_pred cCCCCCc----ccCCccccEEEcCCCcCCCC----Ccccc-CCCCCCCEEeCCCCcCccc----CChhhcCCCCCCEEEC
Q 037488 267 TGPLPLE----IGNLKVLIKIDLSMNNFSGV----IPITI-GYLKDLQYLFLEYNRLQGS----IPDSIGDLINLKSLDL 333 (628)
Q Consensus 267 ~~~~~~~----~~~l~~L~~L~Ls~N~l~~~----~p~~~-~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l 333 (628)
+...... +...++|++|+|++|+++.. +...+ ...+.|++|+|++|.++.. +.+.+..+++|++|++
T Consensus 325 ~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 404 (460)
T d1z7xw1 325 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 404 (460)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred hhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEEC
Confidence 6432222 33456789999999987642 22222 2456799999999998742 3455667789999999
Q ss_pred cCCcccccCchh----hh-cCCCCCEEEccCCccee
Q 037488 334 SNNNLSGIIPIS----LE-KLLDLKDINVSFNKLEG 364 (628)
Q Consensus 334 ~~N~l~~~~~~~----~~-~l~~L~~l~l~~N~l~~ 364 (628)
++|.|+...... +. ....|+.|++.+|.+..
T Consensus 405 s~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~ 440 (460)
T d1z7xw1 405 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440 (460)
T ss_dssp CSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence 999887532222 22 23468999999888764
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.7e-18 Score=181.14 Aligned_cols=344 Identities=20% Similarity=0.192 Sum_probs=224.5
Q ss_pred CCCCEEecCccC------------CCCCCEEEccCCccee----cCCccccCCCCCCEEeccCCccccc----CccccC-
Q 037488 20 STLNSLYLQNVQ------------LQNLEELLLWGNNFSG----TIPSFIFNASKLSRLELQMNSFYGF----IPNTFG- 78 (628)
Q Consensus 20 ~~L~~L~l~~n~------------l~~L~~L~ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~~~~f~- 78 (628)
.+|+.|+++.|+ ++++++|+|++|.++. .++..+..+++|+.|+|++|+|+.. +...+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 357899999987 5689999999998873 3345577899999999999988632 122332
Q ss_pred CCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCCchHHhcc----ccccceeeccCCccccc----
Q 037488 79 NLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGILPRAIGNL----SQSMEIFWMHSCNISGG---- 150 (628)
Q Consensus 79 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l----~~~l~~l~l~~n~~~~~---- 150 (628)
...+|+.|+|++|.++..... .....+..+++|++|++++|.+.......+... .............+...
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~-~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 160 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCG-VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 160 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHH-HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCCCCEEECCCCCccccccc-cccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence 345799999999998753211 112356788999999999999864322222211 00111222222222111
Q ss_pred CCccccCCCCCCEEEccCCcCCccc----cccc-cCCCCCCEeecccCccccc----CCccccCCCCCCEEEccCCcCcc
Q 037488 151 IPEEISNLTNLIAIYLGGNKLNGSI----PIAL-GKLQKLQLLNLEYNQLEGS----IPDDLCRLAALFQLDLGSNKLSG 221 (628)
Q Consensus 151 ~~~~~~~l~~L~~L~L~~n~l~~~~----p~~~-~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~ 221 (628)
....+.....++.++++++...... ...+ ..-.....+++..+.+... ....+.....++.+++++|.+..
T Consensus 161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~ 240 (460)
T d1z7xw1 161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240 (460)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccc
Confidence 0122445677888888887764211 1111 1223556778777765421 11223456889999999998643
Q ss_pred -----cCCCCccCCCCCcEEEccCCcCCcC-----CCCccCCCCCcEEEcCCCCCcCCCCCc-----ccCCccccEEEcC
Q 037488 222 -----FVPASFGNLTNLRSLHLGSNQITSI-----PSTLLNLKDILYLNLSSNFFTGPLPLE-----IGNLKVLIKIDLS 286 (628)
Q Consensus 222 -----~~~~~~~~l~~L~~L~L~~n~l~~l-----p~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls 286 (628)
.....+.....++.+++++|.+... ...+...+.+..+++++|.++...... ......|+.++++
T Consensus 241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~ 320 (460)
T d1z7xw1 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 320 (460)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred cccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence 2233445567899999999998753 233456788999999999886321111 1234578999999
Q ss_pred CCcCCCCCccc----cCCCCCCCEEeCCCCcCccc----CChhhc-CCCCCCEEECcCCccccc----CchhhhcCCCCC
Q 037488 287 MNNFSGVIPIT----IGYLKDLQYLFLEYNRLQGS----IPDSIG-DLINLKSLDLSNNNLSGI----IPISLEKLLDLK 353 (628)
Q Consensus 287 ~N~l~~~~p~~----~~~l~~L~~L~l~~n~~~~~----~~~~~~-~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~ 353 (628)
+|.++...... +....+|++|+|++|+++.. ++..+. ..+.|++|++++|.++.. +...+...++|+
T Consensus 321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~ 400 (460)
T d1z7xw1 321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 400 (460)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred ccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCC
Confidence 99887543222 33456899999999998642 333343 457799999999999753 344567789999
Q ss_pred EEEccCCccee
Q 037488 354 DINVSFNKLEG 364 (628)
Q Consensus 354 ~l~l~~N~l~~ 364 (628)
+|++++|+++.
T Consensus 401 ~L~Ls~N~i~~ 411 (460)
T d1z7xw1 401 ELDLSNNCLGD 411 (460)
T ss_dssp EEECCSSSCCH
T ss_pred EEECCCCcCCH
Confidence 99999999874
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=4.2e-15 Score=130.59 Aligned_cols=126 Identities=20% Similarity=0.125 Sum_probs=61.3
Q ss_pred CCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEe
Q 037488 229 NLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLF 308 (628)
Q Consensus 229 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 308 (628)
++.+++.|+|++|+|+.+|..+..+++|+.|++++|.++.. +.|..+++|++|++++|+++...+..+..+++|+.|+
T Consensus 16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~ 93 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 93 (162)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence 33444444444444444443333344444444444444422 1244455555555555555544333344455555555
Q ss_pred CCCCcCcccCC-hhhcCCCCCCEEECcCCcccccC---chhhhcCCCCCEEE
Q 037488 309 LEYNRLQGSIP-DSIGDLINLKSLDLSNNNLSGII---PISLEKLLDLKDIN 356 (628)
Q Consensus 309 l~~n~~~~~~~-~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~l~ 356 (628)
+++|+++.... ..+..+++|+.|++++|.++... +..+..+++|+.||
T Consensus 94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 55555542211 24555666666666666665332 12355566666654
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=7.3e-15 Score=129.00 Aligned_cols=127 Identities=20% Similarity=0.207 Sum_probs=64.5
Q ss_pred ccCCCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcE
Q 037488 179 LGKLQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILY 258 (628)
Q Consensus 179 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~ 258 (628)
+.+..+|++|+|++|+|+. ++..+..+++|+.|+|++|+|+.. +.|..+++|++|++++|+++.+|..
T Consensus 14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~--------- 81 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG--------- 81 (162)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC---------
T ss_pred ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcc---------
Confidence 3444455555555555552 233444455555555555555433 2344555555555555555554433
Q ss_pred EEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCc-cccCCCCCCCEEeCCCCcCcccCC----hhhcCCCCCCEEE
Q 037488 259 LNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIP-ITIGYLKDLQYLFLEYNRLQGSIP----DSIGDLINLKSLD 332 (628)
Q Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~ 332 (628)
.+..+++|+.|++++|+++.... ..+..+++|++|++++|+++. .| ..+..+++|+.||
T Consensus 82 --------------~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 82 --------------LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp --------------HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred --------------ccccccccccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence 33444455555555555443211 234455666666666666652 23 2356667777765
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=2.6e-14 Score=119.20 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=32.5
Q ss_pred EEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcC
Q 037488 211 QLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNF 290 (628)
Q Consensus 211 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (628)
.|+|++|+++.. + .+..+++|++|++++|+|+++|+.+..+++|+.|++++|.++.. | .+..+++|++|++++|++
T Consensus 2 ~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i 77 (124)
T d1dcea3 2 VLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRL 77 (124)
T ss_dssp EEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCCCCC-c-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCcc
Confidence 344444444422 1 24444444444444444444444444444444444444444422 1 233444444444444444
Q ss_pred C
Q 037488 291 S 291 (628)
Q Consensus 291 ~ 291 (628)
+
T Consensus 78 ~ 78 (124)
T d1dcea3 78 Q 78 (124)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=4.8e-14 Score=117.54 Aligned_cols=118 Identities=31% Similarity=0.310 Sum_probs=84.5
Q ss_pred cEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCCCc
Q 037488 234 RSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEYNR 313 (628)
Q Consensus 234 ~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 313 (628)
|+|+|++|+++.++. +..+++|++|++++|.++. +|..++.+++|+.|++++|.++.. | .++.+++|++|++++|+
T Consensus 1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR 76 (124)
T ss_dssp SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence 568888888888763 6778888888888888874 455677888888888888888753 3 36778888888888888
Q ss_pred CcccC-ChhhcCCCCCCEEECcCCcccccC---chhhhcCCCCCEE
Q 037488 314 LQGSI-PDSIGDLINLKSLDLSNNNLSGII---PISLEKLLDLKDI 355 (628)
Q Consensus 314 ~~~~~-~~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~l 355 (628)
++... ...+..+++|+.|++++|.++... ......+++|+.+
T Consensus 77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 87433 245777788888888888776432 2334456666654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.5e-14 Score=140.23 Aligned_cols=181 Identities=19% Similarity=0.234 Sum_probs=91.9
Q ss_pred CCCCEEEccCCcceec-CCccccCCCCCCEEeccCCcccccCccccCCCCCCCEEEccCc-cccCCCCCCcccccccCCC
Q 037488 33 QNLEELLLWGNNFSGT-IPSFIFNASKLSRLELQMNSFYGFIPNTFGNLRNLNRLGLNDN-YLTSSTPKLNFLSSLSNCK 110 (628)
Q Consensus 33 ~~L~~L~ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~~l~ 110 (628)
.+|++||++++.++.. ++..+..+++|++|+|++|.++...+..++.+++|+.|+++++ .++... ....+.+++
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~----l~~l~~~~~ 121 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA----LQTLLSSCS 121 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH----HHHHHHHCT
T ss_pred CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccc----cchhhHHHH
Confidence 3566666666665432 2344556666666666666665555556666666666666663 333210 001123456
Q ss_pred CCcEEEcccCC-CCCC-CchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCc--CCcc-ccccccCCCCC
Q 037488 111 YLKYFSFSNNS-LDGI-LPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNK--LNGS-IPIALGKLQKL 185 (628)
Q Consensus 111 ~L~~L~l~~n~-l~~~-~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~-~p~~~~~l~~L 185 (628)
+|++|+++++. ++.. ....+... .++|+.|+++++. ++.. +......+++|
T Consensus 122 ~L~~L~ls~c~~~~~~~~~~~~~~~------------------------~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L 177 (284)
T d2astb2 122 RLDELNLSWCFDFTEKHVQVAVAHV------------------------SETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177 (284)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHS------------------------CTTCCEEECCSCGGGSCHHHHHHHHHHCTTC
T ss_pred hccccccccccccccccchhhhccc------------------------ccccchhhhcccccccccccccccccccccc
Confidence 66666666642 2210 11112222 2455555555432 2211 11122345566
Q ss_pred CEeecccC-cccccCCccccCCCCCCEEEccCC-cCcccCCCCccCCCCCcEEEccCC
Q 037488 186 QLLNLEYN-QLEGSIPDDLCRLAALFQLDLGSN-KLSGFVPASFGNLTNLRSLHLGSN 241 (628)
Q Consensus 186 ~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n 241 (628)
++|++++| .+++.....+.++++|++|++++| .+++.....++.+++|+.|+++++
T Consensus 178 ~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 66666654 344444445556666666666663 444433444556666666666655
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2e-14 Score=139.24 Aligned_cols=245 Identities=20% Similarity=0.220 Sum_probs=149.1
Q ss_pred cEEEcccCCCCCCCchHHhcccc-ccceeeccCCcccccCCccccCCCCCCEEEccCCcCCcc-ccccccCCCCCCEeec
Q 037488 113 KYFSFSNNSLDGILPRAIGNLSQ-SMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGS-IPIALGKLQKLQLLNL 190 (628)
Q Consensus 113 ~~L~l~~n~l~~~~p~~~~~l~~-~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L 190 (628)
+.+|++++.+. |+.++.+.. ....+.+....+.... .......+|++|+++++.++.. ++..+..+++|++|++
T Consensus 3 ~~lDLs~~~l~---~~~l~~l~~~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L 78 (284)
T d2astb2 3 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 78 (284)
T ss_dssp SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred CEEECCCCCCC---chHHHHHHhccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccc
Confidence 46777777653 444443321 2233333333333222 2233456888999988887643 3445677888999999
Q ss_pred ccCcccccCCccccCCCCCCEEEccCC-cCccc-CCCCccCCCCCcEEEccCC-cCCc--CCCCccC-CCCCcEEEcCCC
Q 037488 191 EYNQLEGSIPDDLCRLAALFQLDLGSN-KLSGF-VPASFGNLTNLRSLHLGSN-QITS--IPSTLLN-LKDILYLNLSSN 264 (628)
Q Consensus 191 ~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~--lp~~~~~-l~~L~~L~l~~n 264 (628)
+++.+....+..+..+++|++|+++++ .++.. .......+++|++|+++++ .++. +...+.. .++|+.|+++++
T Consensus 79 ~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~ 158 (284)
T d2astb2 79 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 158 (284)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccc
Confidence 988887666677788888999999884 45421 1122356788899998875 3432 2222222 367888888765
Q ss_pred C--CcC-CCCCcccCCccccEEEcCCC-cCCCCCccccCCCCCCCEEeCCCC-cCcccCChhhcCCCCCCEEECcCCccc
Q 037488 265 F--FTG-PLPLEIGNLKVLIKIDLSMN-NFSGVIPITIGYLKDLQYLFLEYN-RLQGSIPDSIGDLINLKSLDLSNNNLS 339 (628)
Q Consensus 265 ~--l~~-~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~N~l~ 339 (628)
. ++. .+...+..+++|++|++++| .+++.....+..+++|++|++++| .++......++.+++|+.|+++++--.
T Consensus 159 ~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d 238 (284)
T d2astb2 159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238 (284)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCT
T ss_pred ccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCH
Confidence 3 221 12222355678888888875 466556666777888888888885 566555566777888888888877222
Q ss_pred ccCchhhhcCCCCCEEEccCCccee
Q 037488 340 GIIPISLEKLLDLKDINVSFNKLEG 364 (628)
Q Consensus 340 ~~~~~~~~~l~~L~~l~l~~N~l~~ 364 (628)
+..+.....+++|+ +..+.++.
T Consensus 239 ~~l~~l~~~lp~L~---i~~~~ls~ 260 (284)
T d2astb2 239 GTLQLLKEALPHLQ---INCSHFTT 260 (284)
T ss_dssp TCHHHHHHHSTTSE---ESCCCSCC
T ss_pred HHHHHHHHhCcccc---ccCccCCC
Confidence 22222234455544 45555554
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.45 E-value=7.7e-15 Score=146.85 Aligned_cols=251 Identities=18% Similarity=0.179 Sum_probs=136.5
Q ss_pred cccCCCCCCCEEEccCccccCCCCCCcccccccCCCCCcEEEcccCCCCCCC---chHHhccccccceeeccCCcccccC
Q 037488 75 NTFGNLRNLNRLGLNDNYLTSSTPKLNFLSSLSNCKYLKYFSFSNNSLDGIL---PRAIGNLSQSMEIFWMHSCNISGGI 151 (628)
Q Consensus 75 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---p~~~~~l~~~l~~l~l~~n~~~~~~ 151 (628)
.++....+|+.|+|++|.+...... .....+...++|+.|+++++...... +..+.. +
T Consensus 25 ~~L~~~~~l~~L~Ls~n~i~~~~~~-~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~------------------l 85 (344)
T d2ca6a1 25 AVLLEDDSVKEIVLSGNTIGTEAAR-WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL------------------L 85 (344)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHH-HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH------------------H
T ss_pred HHHhhCCCCCEEECcCCcCCHHHHH-HHHHHHHhCCCCCEEECCCCcccccccccchHHHH------------------H
Confidence 3456678888888888877532100 01134667788888888877654322 111111 1
Q ss_pred CccccCCCCCCEEEccCCcCCcc----ccccccCCCCCCEeecccCcccccCCccc-------------cCCCCCCEEEc
Q 037488 152 PEEISNLTNLIAIYLGGNKLNGS----IPIALGKLQKLQLLNLEYNQLEGSIPDDL-------------CRLAALFQLDL 214 (628)
Q Consensus 152 ~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-------------~~l~~L~~L~L 214 (628)
...+...++|+.|+|++|.+... +...+...++|++|++++|.+...-...+ ...+.|+.+++
T Consensus 86 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l 165 (344)
T d2ca6a1 86 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 165 (344)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeec
Confidence 23455677888888888887653 23334566788888888887642111111 23345555555
Q ss_pred cCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCC-----CCCcccCCccccEEEcCCCc
Q 037488 215 GSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGP-----LPLEIGNLKVLIKIDLSMNN 289 (628)
Q Consensus 215 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~ 289 (628)
++|.+....... +...+...+.|+.|++++|.++.. +...+...++|+.|+|++|.
T Consensus 166 ~~n~i~~~~~~~-------------------l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~ 226 (344)
T d2ca6a1 166 GRNRLENGSMKE-------------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 226 (344)
T ss_dssp CSSCCTGGGHHH-------------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred cccccccccccc-------------------ccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc
Confidence 555543211000 111222334444555555544321 12234455566666666666
Q ss_pred CCCC----CccccCCCCCCCEEeCCCCcCcccC----ChhhcC--CCCCCEEECcCCccccc----Cchhh-hcCCCCCE
Q 037488 290 FSGV----IPITIGYLKDLQYLFLEYNRLQGSI----PDSIGD--LINLKSLDLSNNNLSGI----IPISL-EKLLDLKD 354 (628)
Q Consensus 290 l~~~----~p~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~--l~~L~~L~l~~N~l~~~----~~~~~-~~l~~L~~ 354 (628)
++.. +...+..+++|++|+|++|.++..- -..+.. .+.|+.|++++|.|+.. +...+ .+.++|+.
T Consensus 227 i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~ 306 (344)
T d2ca6a1 227 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306 (344)
T ss_dssp CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred ccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCE
Confidence 5321 1233455667777777777765432 222222 35688888888877542 12223 25677888
Q ss_pred EEccCCcce
Q 037488 355 INVSFNKLE 363 (628)
Q Consensus 355 l~l~~N~l~ 363 (628)
|++++|++.
T Consensus 307 L~l~~N~~~ 315 (344)
T d2ca6a1 307 LELNGNRFS 315 (344)
T ss_dssp EECTTSBSC
T ss_pred EECCCCcCC
Confidence 888888775
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.43 E-value=4.6e-15 Score=148.47 Aligned_cols=250 Identities=17% Similarity=0.209 Sum_probs=155.8
Q ss_pred CccccCCCCCCEEeccCCccccc----CccccCCCCCCCEEEccCccccCCCCCC-----cccccccCCCCCcEEEcccC
Q 037488 50 PSFIFNASKLSRLELQMNSFYGF----IPNTFGNLRNLNRLGLNDNYLTSSTPKL-----NFLSSLSNCKYLKYFSFSNN 120 (628)
Q Consensus 50 p~~~~~l~~L~~L~L~~N~l~~~----~~~~f~~l~~L~~L~L~~N~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~n 120 (628)
...+....+|+.|+|++|.+... +...+...++|+.|+++++......... .....+..+++|+.|+|++|
T Consensus 24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n 103 (344)
T d2ca6a1 24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103 (344)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence 45567789999999999988542 2345778899999999988765432211 12245667899999999999
Q ss_pred CCCCCCchHHhccccccceeeccCCcccccCCccccCCCCCCEEEccCCcCCccccc-------------cccCCCCCCE
Q 037488 121 SLDGILPRAIGNLSQSMEIFWMHSCNISGGIPEEISNLTNLIAIYLGGNKLNGSIPI-------------ALGKLQKLQL 187 (628)
Q Consensus 121 ~l~~~~p~~~~~l~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-------------~~~~l~~L~~ 187 (628)
.+...-...+. ..+...++|+.|++++|.+...-.. .....+.|+.
T Consensus 104 ~i~~~~~~~l~---------------------~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~ 162 (344)
T d2ca6a1 104 AFGPTAQEPLI---------------------DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS 162 (344)
T ss_dssp CCCTTTHHHHH---------------------HHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred ccccccccchh---------------------hhhcccccchheecccccccccccccccccccccccccccccCcccce
Confidence 88753222221 2344567899999999987531111 1235678999
Q ss_pred eecccCccccc----CCccccCCCCCCEEEccCCcCccc-----CCCCccCCCCCcEEEccCCcCCc-----CCCCccCC
Q 037488 188 LNLEYNQLEGS----IPDDLCRLAALFQLDLGSNKLSGF-----VPASFGNLTNLRSLHLGSNQITS-----IPSTLLNL 253 (628)
Q Consensus 188 L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l 253 (628)
+++++|++... +...+...+.|+.|++++|.+... +...+..+++|+.|+|++|.++. +...+...
T Consensus 163 l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~ 242 (344)
T d2ca6a1 163 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242 (344)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred eecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccc
Confidence 99999987632 222345667888999988887532 33456667778888888777643 23344455
Q ss_pred CCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccC--CCCCCCEEeCCCCcCccc----CChhhc-CCC
Q 037488 254 KDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIG--YLKDLQYLFLEYNRLQGS----IPDSIG-DLI 326 (628)
Q Consensus 254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~l~~n~~~~~----~~~~~~-~l~ 326 (628)
++|++|++++|.++......+. ..+. ....|++|++++|+++.. +...+. .++
T Consensus 243 ~~L~~L~Ls~n~i~~~g~~~l~--------------------~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~ 302 (344)
T d2ca6a1 243 PNLRELGLNDCLLSARGAAAVV--------------------DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302 (344)
T ss_dssp TTCCEEECTTCCCCHHHHHHHH--------------------HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred ccchhhhhhcCccCchhhHHHH--------------------HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCC
Confidence 6666666666665422111110 0011 124466666666666431 222232 456
Q ss_pred CCCEEECcCCcccc
Q 037488 327 NLKSLDLSNNNLSG 340 (628)
Q Consensus 327 ~L~~L~l~~N~l~~ 340 (628)
+|+.|++++|.+..
T Consensus 303 ~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 303 DLLFLELNGNRFSE 316 (344)
T ss_dssp TCCEEECTTSBSCT
T ss_pred CCCEEECCCCcCCC
Confidence 67777777777753
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.3e-12 Score=113.64 Aligned_cols=108 Identities=20% Similarity=0.129 Sum_probs=84.8
Q ss_pred CCCCEEEccCCcCCccccccccCCCCCCEeecccC-cccccCCccccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEE
Q 037488 159 TNLIAIYLGGNKLNGSIPIALGKLQKLQLLNLEYN-QLEGSIPDDLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLH 237 (628)
Q Consensus 159 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 237 (628)
...+.++.+++.+. ..|..+..+++|++|++++| .++...+.+|.++++|+.|+|++|+|+.+.+.+|..+++|++|+
T Consensus 8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 86 (156)
T d2ifga3 8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (156)
T ss_dssp SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence 34456777777776 45666777888888888765 47766667788888888888888888888788888888888888
Q ss_pred ccCCcCCcCCCCccCCCCCcEEEcCCCCCc
Q 037488 238 LGSNQITSIPSTLLNLKDILYLNLSSNFFT 267 (628)
Q Consensus 238 L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~ 267 (628)
|++|+|+.+|..++...+|++|+|++|.+.
T Consensus 87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 87 LSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccCCCCcccChhhhccccccccccCCCccc
Confidence 888888888877766667888888888764
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.33 E-value=8.6e-15 Score=133.28 Aligned_cols=109 Identities=28% Similarity=0.251 Sum_probs=47.0
Q ss_pred cccCCCCCCEEEccCCcCcccCCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCcccc
Q 037488 202 DLCRLAALFQLDLGSNKLSGFVPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLI 281 (628)
Q Consensus 202 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 281 (628)
.+..+++|++|+|++|+|+.+ + .+..+++|+.|+|++|.|+.+|.....+++|++|++++|.++.. ..+..+++|+
T Consensus 43 sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~ 118 (198)
T d1m9la_ 43 TLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL--SGIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSS
T ss_pred HHhcccccceeECcccCCCCc-c-cccCCccccChhhccccccccccccccccccccccccccccccc--cccccccccc
Confidence 344444444555554444432 1 34445555555555555554443222233444444444444421 1233444444
Q ss_pred EEEcCCCcCCCCCc-cccCCCCCCCEEeCCCCcC
Q 037488 282 KIDLSMNNFSGVIP-ITIGYLKDLQYLFLEYNRL 314 (628)
Q Consensus 282 ~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~n~~ 314 (628)
.|++++|+++.... ..+..+++|+.|++++|++
T Consensus 119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred ccccccchhccccccccccCCCccceeecCCCcc
Confidence 44444444432211 1233444444444444443
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.29 E-value=3.2e-14 Score=129.46 Aligned_cols=130 Identities=22% Similarity=0.318 Sum_probs=97.1
Q ss_pred CCCCccCCCCCcEEEccCCcCCcCCCCccCCCCCcEEEcCCCCCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCC
Q 037488 223 VPASFGNLTNLRSLHLGSNQITSIPSTLLNLKDILYLNLSSNFFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLK 302 (628)
Q Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 302 (628)
.+.++..+++|++|+|++|+|+.++ .+..+++|++|++++|.++. +|..+..+++|+.|++++|+++.. + .+..++
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l-~-~~~~l~ 115 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL-S-GIEKLV 115 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH-H-HHHHHH
T ss_pred hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccc-cccccccccccccccccccccccc-c-cccccc
Confidence 3456778889999999999998886 47788889999999998874 444455567788889998888753 2 356778
Q ss_pred CCCEEeCCCCcCcccCC-hhhcCCCCCCEEECcCCcccccCch----------hhhcCCCCCEEE
Q 037488 303 DLQYLFLEYNRLQGSIP-DSIGDLINLKSLDLSNNNLSGIIPI----------SLEKLLDLKDIN 356 (628)
Q Consensus 303 ~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~----------~~~~l~~L~~l~ 356 (628)
+|+.|++++|+++.... ..+..+++|+.|++++|.+....+. .+..+++|+.||
T Consensus 116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 88888888888874322 4578888888888888887654332 156678888775
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.2e-11 Score=107.25 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=50.6
Q ss_pred CcEEEccCCcCCcCCCCccCCCCCcEEEcCCC-CCcCCCCCcccCCccccEEEcCCCcCCCCCccccCCCCCCCEEeCCC
Q 037488 233 LRSLHLGSNQITSIPSTLLNLKDILYLNLSSN-FFTGPLPLEIGNLKVLIKIDLSMNNFSGVIPITIGYLKDLQYLFLEY 311 (628)
Q Consensus 233 L~~L~L~~n~l~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 311 (628)
.+.++.+++.+.++|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+++.+.+..|..+++|++|+|++
T Consensus 10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~ 89 (156)
T d2ifga3 10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (156)
T ss_dssp SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence 34455555555555555555555555555433 24444444455555555555555555444444444444455555554
Q ss_pred CcCcccCChhhcCCCCCCEEECcCCcc
Q 037488 312 NRLQGSIPDSIGDLINLKSLDLSNNNL 338 (628)
Q Consensus 312 n~~~~~~~~~~~~l~~L~~L~l~~N~l 338 (628)
|+++...++.|..+ +|+.|+|++|.+
T Consensus 90 N~l~~l~~~~~~~~-~l~~L~L~~Np~ 115 (156)
T d2ifga3 90 NALESLSWKTVQGL-SLQELVLSGNPL 115 (156)
T ss_dssp SCCSCCCSTTTCSC-CCCEEECCSSCC
T ss_pred CCCcccChhhhccc-cccccccCCCcc
Confidence 44443333333222 344444444443
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.77 E-value=1.4e-09 Score=97.76 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=48.6
Q ss_pred CCcccccccCCccEEEEEEecCCcEEEEEEeeccc------------------hhHHHHHHHHHHHhhcccCCCcceeee
Q 037488 429 FSENNLIDRGGIGYVYKRRIHYGMEVAVKVFDLQY------------------REAFKNFDIECDMMKHIRHRNLIKIIS 490 (628)
Q Consensus 429 ~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~------------------~~~~~~~~~E~~~l~~l~h~niv~l~~ 490 (628)
++..+.||+|+||+||+|...+|+.||||+++... ......+.+|...+.+++|+++++.++
T Consensus 2 ~~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~ 81 (191)
T d1zara2 2 DAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYA 81 (191)
T ss_dssp SEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEE
T ss_pred chhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEE
Confidence 34568999999999999998889999999875311 011234567899999999999998765
Q ss_pred e
Q 037488 491 S 491 (628)
Q Consensus 491 ~ 491 (628)
+
T Consensus 82 ~ 82 (191)
T d1zara2 82 W 82 (191)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=1.5e-08 Score=88.04 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=43.9
Q ss_pred CCCCCEeecccCcccccCCccccCCCCCCEEEccCCcCcccC--CCCccCCCCCcEEEccCCcCCcCCC-CccCCCCCcE
Q 037488 182 LQKLQLLNLEYNQLEGSIPDDLCRLAALFQLDLGSNKLSGFV--PASFGNLTNLRSLHLGSNQITSIPS-TLLNLKDILY 258 (628)
Q Consensus 182 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~ 258 (628)
+..+..++...+... .++..+..+++|++|+|++|+|+... +..+..+++|+.|+|++|.|++++. .......|+.
T Consensus 41 ~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~ 119 (162)
T d1koha1 41 QNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 119 (162)
T ss_dssp TTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSS
T ss_pred ccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccce
Confidence 333444444444332 23333345666666666666665432 2334556666666666666666543 1122334555
Q ss_pred EEcCCCCCcC
Q 037488 259 LNLSSNFFTG 268 (628)
Q Consensus 259 L~l~~n~l~~ 268 (628)
|++++|.+..
T Consensus 120 L~L~~Npl~~ 129 (162)
T d1koha1 120 LWLDGNSLSD 129 (162)
T ss_dssp CCCTTSTTSS
T ss_pred eecCCCCcCc
Confidence 5566555543
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=9.8e-09 Score=89.14 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=8.4
Q ss_pred CCCCCcEEEccCCcCCcC
Q 037488 229 NLTNLRSLHLGSNQITSI 246 (628)
Q Consensus 229 ~l~~L~~L~L~~n~l~~l 246 (628)
.+++|++|+|++|+|+.+
T Consensus 63 ~~~~L~~L~Ls~N~i~~l 80 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRL 80 (162)
T ss_dssp HCTTCCCCCCCSSCCCCC
T ss_pred hCCCCCEeeCCCccccCC
Confidence 344444444444444443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.34 E-value=2.8e-05 Score=66.97 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=55.7
Q ss_pred CCCCEEEccCC-cceec----CCccccCCCCCCEEeccCCcccccCc----cccCCCCCCCEEEccCccccCCCCCCccc
Q 037488 33 QNLEELLLWGN-NFSGT----IPSFIFNASKLSRLELQMNSFYGFIP----NTFGNLRNLNRLGLNDNYLTSSTPKLNFL 103 (628)
Q Consensus 33 ~~L~~L~ls~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~----~~f~~l~~L~~L~L~~N~l~~~~~~~~~~ 103 (628)
++|++|+|+++ .++.. +-..+...+.|++|+|++|.+..... +.+...+.|+.|+|++|.++.... ....
T Consensus 15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~-~~l~ 93 (167)
T d1pgva_ 15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL-ARLL 93 (167)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH-HHHH
T ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH-HHHH
Confidence 55666677653 34321 22335566778888888887753222 234456778888888887764210 0122
Q ss_pred ccccCCCCCcEEEcccCCCCCC
Q 037488 104 SSLSNCKYLKYFSFSNNSLDGI 125 (628)
Q Consensus 104 ~~~~~l~~L~~L~l~~n~l~~~ 125 (628)
.++...++|++|++++|.+..+
T Consensus 94 ~aL~~n~sL~~L~l~~n~~~~~ 115 (167)
T d1pgva_ 94 RSTLVTQSIVEFKADNQRQSVL 115 (167)
T ss_dssp HHTTTTCCCSEEECCCCSSCCC
T ss_pred HHHHhCCcCCEEECCCCcCCCc
Confidence 3566677888888888876543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.33 E-value=5.7e-05 Score=64.97 Aligned_cols=62 Identities=19% Similarity=0.170 Sum_probs=37.8
Q ss_pred CCCCCCEEeCCCCcCccc----CChhhcCCCCCCEEECcCCccccc-------CchhhhcCCCCCEEEccCCc
Q 037488 300 YLKDLQYLFLEYNRLQGS----IPDSIGDLINLKSLDLSNNNLSGI-------IPISLEKLLDLKDINVSFNK 361 (628)
Q Consensus 300 ~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~N~l~~~-------~~~~~~~l~~L~~l~l~~N~ 361 (628)
..+.|++|+|++|.++.. +-..+...++|+.|++++|.+..+ +...+...++|+.|+++++.
T Consensus 70 ~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 70 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence 345667777777766532 223355556788888877765432 23345556778888877664
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.45 E-value=0.00015 Score=62.22 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=7.6
Q ss_pred cCCCCCcEEEcccCCC
Q 037488 107 SNCKYLKYFSFSNNSL 122 (628)
Q Consensus 107 ~~l~~L~~L~l~~n~l 122 (628)
...++|++|++++|.+
T Consensus 43 ~~n~~L~~L~Ls~n~l 58 (166)
T d1io0a_ 43 KTNTYVKKFSIVGTRS 58 (166)
T ss_dssp TTCCSCCEEECTTSCC
T ss_pred hcCCccCeeeccCCcc
Confidence 3444455555555444
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.14 E-value=0.00062 Score=58.11 Aligned_cols=83 Identities=18% Similarity=0.160 Sum_probs=43.8
Q ss_pred cCCCCCCEEEccC-CcCCcc----ccccccCCCCCCEeecccCcccccC----CccccCCCCCCEEEccCCcCccc----
Q 037488 156 SNLTNLIAIYLGG-NKLNGS----IPIALGKLQKLQLLNLEYNQLEGSI----PDDLCRLAALFQLDLGSNKLSGF---- 222 (628)
Q Consensus 156 ~~l~~L~~L~L~~-n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~---- 222 (628)
.+.++|+.|+|++ +.++.. +-..+...++|++|+|++|.+.... -..+...++++.+++++|.+...
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 3456777777776 344321 2223446667777777777664321 12234456666677666665432
Q ss_pred CCCCccCCCCCcEEEc
Q 037488 223 VPASFGNLTNLRSLHL 238 (628)
Q Consensus 223 ~~~~~~~l~~L~~L~L 238 (628)
+...+...++|+.++|
T Consensus 94 l~~~l~~~~~L~~l~L 109 (166)
T d1io0a_ 94 LVEALQSNTSLIELRI 109 (166)
T ss_dssp HHHGGGGCSSCCEEEC
T ss_pred HHHHHHhCccccEEee
Confidence 1233444555655444
|