Citrus Sinensis ID: 037505

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---

MENMLCDELLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYRASKTSLSLRIIPDNSMVFSVSSLLSNYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDVVRTWASQKFIEVVV

ccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHccccccEEccccccccccccccccccccccHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHcccccEEEEEccccccHHHHHHcccccEEEEcccccccccHHHHHHHcccccccHHHHcccccccEEEEcccccccHHHHHHHHccccccEEEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHcccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEEcccccHHHHHHHHcccccccc

ccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHcccccccccccHHHHHHHHHccccHHHHHHHccccccccEEEccccccccHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHcccHcEccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccHHHHHHHccccccEEEEEcccEccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHcccccccEEEEccccccccHHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHHHEEc

MENMLCDELLQEIFtklpttpsssslsvCLVSKRWLNLYRASKtslslriipdnsmVFSVSSLLSNYPFVSSLSVALsssestattssrsnpsffDRLLFVVSSScsnlkhlrfsagpvsVSSLLSLSEACNHLTSLtvslsrplyfnWVASFSCLkelsvyacdadeVENEVFRRYgetglcsneeidTVLGLESLClsgirsedtgvgWLWRSCKRLKKLQlkscsgigdggsfaNFVKCSqgleevklrTCRSIVDVVLLNLAENCDSLNsllvydgcsrEGLLQFISHCRCNlqkldlrlpldlnnvHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALIncdvvdrepglLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLtelklrgckgltSMAVVSMSKSckrlqtvdimHCCRVGAEAVELFVlnspqlrrvevdenkLSDVVRTWASQKFIEVVV

MENMLCDELLQEIFTklpttpsssslsVCLVSKRWLNLYRASKtslslriipDNSMVFSVSSLLSNYPFVSSLSVALSSSEStattssrsnpsFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGirsedtgvgWLWRSCKRLKKLQLKScsgigdggsFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELfvlnspqlrrvevdenklsdvvrtwasqkfievvv

MENMLCDELLQEIFtklpttpsssslsvclvskRWLNLYRASKTSLSLRIIPDNSMVFSVSSLLSNYPFvsslsvalsssestattssrsNPSFFDRLLFVVSSSCSNLKHLRFSAGPvsvssllslsEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCnlqkldlrlpldlnnVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDVVRTWASQKFIEVVV

*****CDELLQEIFTKL*******SLSVCLVSKRWLNLYRASKTSLSLRIIPDNSMVFSVSSLLSNYPFVSSLS*******************FFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDVVRTWASQKFIEV**

MENMLCDELLQEIFTKLPT********VCLVSKRWLNLYRASKTSLSLRIIPDNSMVFSVSSLLSNYPFVSS******************NPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDVVRTWASQKFIEVVV

*ENMLCDELLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYRASKTSLSLRIIPDNSMVFSVSSLLSNYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDVVRTWASQKFIEVVV

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		483	2.2.26 [Sep-21-2011]
Q9C5D2		610	F-box/LRR-repeat protein	no	no	0.776	0.614	0.228	4e-15
C8V4D4		585	SCF E3 ubiquitin ligase c	yes	no	0.525	0.434	0.273	6e-13
Q5R3Z8		423	F-box/LRR-repeat protein	yes	no	0.447	0.510	0.248	4e-11
Q9UKC9		423	F-box/LRR-repeat protein	yes	no	0.447	0.510	0.248	5e-11
Q8BH16		423	F-box/LRR-repeat protein	yes	no	0.447	0.510	0.244	9e-11
Q96IG2		436	F-box/LRR-repeat protein	no	no	0.469	0.520	0.258	9e-11
Q58DG6		436	F-box/LRR-repeat protein	yes	no	0.469	0.520	0.258	9e-11
Q9CZV8		436	F-box/LRR-repeat protein	no	no	0.469	0.520	0.258	1e-10
A1A5X2		489	F-box/LRR-repeat protein	no	no	0.511	0.505	0.260	1e-10
A6H779		423	F-box/LRR-repeat protein	no	no	0.447	0.510	0.248	6e-10

>sp\|Q9C5D2\|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1	Back alignment and function desciption

 Score = 83.6 bits (205), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 186/411 (45%), Gaps = 36/411 (8%)

Query: 70  VSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSE 129
           V  + + +  S+S  +    ++    D  L  V S C  L+ L   +  +    L+++++
Sbjct: 207 VGVIDLVVGCSKSLKSIGVAASAKITDLSLEAVGSHCKLLEVLYLDSEYIHDKGLIAVAQ 266

Query: 130 ACNHLTSLT---VSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNE 186
            C+ L +L    VS++   +       + L+ L++Y+          F+ + + G+    
Sbjct: 267 GCHRLKNLKLQCVSVTDVAFAAVGELCTSLERLALYS----------FQHFTDKGM---- 312

Query: 187 EIDTVLGLESLCLSGIRSED------TGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFV 240
                +G  S  L  +   D       G+  +   CK L+++++  C  IG  G  A   
Sbjct: 313 ---RAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGK 369

Query: 241 KCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFIS---HCRCNL 297
            C + L+E+ L  C+ I +  L  + + C SL  L + D CS  G +   S    CR NL
Sbjct: 370 SCPR-LKELALLYCQRIGNSALQEIGKGCKSLEILHLVD-CSGIGDIAMCSIAKGCR-NL 426

Query: 298 QKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALIN 357
           +KL +R   ++ N  + ++    + L+ L L+ C  V    L A+G   S  L++L +  
Sbjct: 427 KKLHIRRCYEIGNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGCS--LQQLNVSG 484

Query: 358 CDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTS 417
           C+ +  + G+ A + +   QL  LD+S  + + D     +   C  L +L L  C  +T 
Sbjct: 485 CNQIS-DAGITA-IARGCPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVLSHCHHITD 542

Query: 418 MAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSD 468
             +  + + CK L+T  +++C  + +  V   V + P +++V +++ K+++
Sbjct: 543 NGLNHLVQKCKLLETCHMVYCPGITSAGVATVVSSCPHIKKVLIEKWKVTE 593

Arabidopsis thaliana (taxid: 3702)

>sp\|C8V4D4\|GRRA_EMENI SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=grrA PE=2 SV=1	Back alignment and function description

>sp\|Q5R3Z8\|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1	Back alignment and function description

>sp\|Q9UKC9\|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3	Back alignment and function description

>sp\|Q8BH16\|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1	Back alignment and function description

>sp\|Q96IG2\|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2	Back alignment and function description

>sp\|Q58DG6\|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2	Back alignment and function description

>sp\|Q9CZV8\|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3	Back alignment and function description

>sp\|A1A5X2\|FBXL7_DANRE F-box/LRR-repeat protein 7 OS=Danio rerio GN=fbxl7 PE=2 SV=1	Back alignment and function description

>sp\|A6H779\|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		483
224140857		484	predicted protein [Populus trichocarpa]	0.989	0.987	0.683	1e-169
255560906		484	F-box/LRR-repeat protein, putative [Rici	0.991	0.989	0.665	1e-161
225452344		470	PREDICTED: SCF E3 ubiquitin ligase compl	0.933	0.959	0.618	1e-143
356571305		464	PREDICTED: F-box/LRR-repeat protein 3-li	0.956	0.995	0.581	1e-131
356560573		460	PREDICTED: F-box/LRR-repeat protein 3-li	0.948	0.995	0.572	1e-131
449446700		470	PREDICTED: F-box/LRR-repeat protein 7-li	0.973	1.0	0.567	1e-130
449489483		470	PREDICTED: F-box/LRR-repeat protein 7-li	0.973	1.0	0.569	1e-130
296087612		383	unnamed protein product [Vitis vinifera]	0.598	0.754	0.681	1e-104
15242713		496	RNI-like superfamily protein [Arabidopsi	0.971	0.945	0.476	5e-94
125524191		489	hypothetical protein OsI_00160 [Oryza sa	0.964	0.952	0.427	4e-91

>gi\|224140857\|ref\|XP_002323795.1\| predicted protein [Populus trichocarpa] gi\|222866797\|gb\|EEF03928.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 333/487 (68%), Positives = 400/487 (82%), Gaps = 9/487 (1%)

Query: 1   MENMLCDELLQEIFTKLP-----TTPSSSSLSVCLVSKRWLNLYRASKTSLSLRIIPDNS 55
           M++MLCDELLQEIFT++P        S+S+ SV LVSKRWL+LYR SKTSLSLR+ PD+S
Sbjct: 1   MDDMLCDELLQEIFTRIPKSLPPPPSSASAASVSLVSKRWLHLYRTSKTSLSLRLNPDDS 60

Query: 56  MVFSVSSLLSNYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFS 115
            + S++S+LS+YPF+SSLS+ L SS+ T   +  S P+F+DRLLF+VS+ CS+LKHLRF 
Sbjct: 61  TISSLTSVLSHYPFLSSLSLFLLSSDPTVPATITSPPAFYDRLLFIVSAICSSLKHLRFL 120

Query: 116 AGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFR 175
           AGPVS SSL SLS +C  L SLT+SL RPLYFNWV SFSCLKELSVY      V++    
Sbjct: 121 AGPVSQSSLFSLSNSCTFLNSLTISLYRPLYFNWVVSFSCLKELSVYVSGFYGVDD--CN 178

Query: 176 RYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGS 235
           R  E+G C NEE+D  LGLESL LSGI  ED GVGWLWRS KRLKKL+LKSC GIGDGGS
Sbjct: 179 R--ESGFCINEELDAELGLESLFLSGIGGEDYGVGWLWRSSKRLKKLKLKSCEGIGDGGS 236

Query: 236 FANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRC 295
           F +F KC +GL+EV++R CRSIV+ VLL LAENCDSL SLLVYDG +REGL  FIS CRC
Sbjct: 237 FLSFAKCLKGLQEVEIRACRSIVNGVLLKLAENCDSLYSLLVYDGGNREGLHHFISSCRC 296

Query: 296 NLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELAL 355
           +LQKLD RLPLDL N HLSA+ + FRGLS LRLQSCCLVSG+GLKALG+A++SGLEELAL
Sbjct: 297 DLQKLDFRLPLDLRNDHLSAIGLNFRGLSTLRLQSCCLVSGEGLKALGIALNSGLEELAL 356

Query: 356 INCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGL 415
           INCDVV+RE GLLA+LGQ+ +QL+KLDLSYNE LLDKEF++MLVSCN L EL LR C GL
Sbjct: 357 INCDVVERESGLLATLGQHTRQLKKLDLSYNEFLLDKEFISMLVSCNCLIELNLRRCAGL 416

Query: 416 TSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDVVRTWAS 475
           T++++VSM K+C++LQ+VDIMHC  +GAEAVELFVLNSPQLR ++V+ENK+SDV R+WAS
Sbjct: 417 TTVSMVSMFKNCRKLQSVDIMHCDGIGAEAVELFVLNSPQLRGLQVEENKVSDVARSWAS 476

Query: 476 QKFIEVV 482
            K I++V
Sbjct: 477 HKLIQIV 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255560906\|ref\|XP_002521466.1\| F-box/LRR-repeat protein, putative [Ricinus communis] gi\|223539365\|gb\|EEF40956.1\| F-box/LRR-repeat protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225452344\|ref\|XP_002272892.1\| PREDICTED: SCF E3 ubiquitin ligase complex F-box protein grrA [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356571305\|ref\|XP_003553819.1\| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356560573\|ref\|XP_003548565.1\| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|449446700\|ref\|XP_004141109.1\| PREDICTED: F-box/LRR-repeat protein 7-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449489483\|ref\|XP_004158325.1\| PREDICTED: F-box/LRR-repeat protein 7-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|296087612\|emb\|CBI34868.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|15242713\|ref\|NP_198863.1\| RNI-like superfamily protein [Arabidopsis thaliana] gi\|16612314\|gb\|AAL27516.1\|AF439848_1 AT5g40470/K21I16_20 [Arabidopsis thaliana] gi\|9759491\|dbj\|BAB10496.1\| unnamed protein product [Arabidopsis thaliana] gi\|332007168\|gb\|AED94551.1\| RNI-like superfamily protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|125524191\|gb\|EAY72305.1\| hypothetical protein OsI_00160 [Oryza sativa Indica Group] gi\|125587124\|gb\|EAZ27788.1\| hypothetical protein OsJ_11732 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		483
TAIR\|locus:2155647		496	AT5G40470 "AT5G40470" [Arabido	0.975	0.949	0.402	2.5e-88
TAIR\|locus:505006471		610	AT4G15475 "AT4G15475" [Arabido	0.559	0.442	0.287	1.3e-15
TAIR\|locus:2149805		665	AT5G01720 "AT5G01720" [Arabido	0.559	0.406	0.248	1e-14
ASPGD\|ASPL0000017608		585	grrA [Emericella nidulans (tax	0.544	0.449	0.271	1.7e-14
TAIR\|locus:2143320		642	AT5G27920 "AT5G27920" [Arabido	0.635	0.478	0.272	5.9e-13
MGI\|MGI:1919429		423	Fbxl2 "F-box and leucine-rich	0.542	0.619	0.256	1.5e-12
MGI\|MGI:1919444		436	Fbxl20 "F-box and leucine-rich	0.490	0.543	0.250	1.6e-12
UNIPROTKB\|Q58DG6		436	FBXL20 "F-box/LRR-repeat prote	0.490	0.543	0.250	1.6e-12
UNIPROTKB\|Q96IG2		436	FBXL20 "F-box/LRR-repeat prote	0.490	0.543	0.250	1.6e-12
TAIR\|locus:2166978		405	AT5G23340 [Arabidopsis thalian	0.507	0.604	0.260	2e-12

TAIR\|locus:2155647 AT5G40470 "AT5G40470" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
 Identities = 202/502 (40%), Positives = 292/502 (58%)

Query:     1 MENMLCDELLQEIFXXXXXXXXXXXXXXXXX---------XXRWLNLYRASKTSLSLRII 51
             ME +L DE+L EIF                            RWL LYRASKTS+SL+  
Sbjct:     1 MEEILFDEILCEIFTRLPSSSSSSSSSSSSLPSFESVPLVSKRWLRLYRASKTSMSLQFS 60

Query:    52 P-DNSMVFSVSSLLSNYPFXXXXXXXXXXXXXXXXXXXX-----XNPSFFDRLLFVVSSS 105
             P D S++  + S+L+N+P                              F D L+ ++SS 
Sbjct:    61 PHDTSVITLLPSILNNHPCLSSLSIYRGVTIGTTPSRSDEEHLKAETIFSDELISIISSC 120

Query:   106 CSNLKHLRFSAGPXXXXXXXXXXEACNHLTSLTVSLSRPLY--FNWVASFSCLKELSVYA 163
             C NL++L F   P           + + LTSL++ L +P    F W+A FS LKELS++ 
Sbjct:   121 CFNLRNLCFLINPVSSSSLVPLSTSLS-LTSLSIELWKPQNSGFTWIALFSSLKELSIHV 179

Query:   164 CDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQ 223
             C      +  F  Y ++    N E+   LGLES+ L GI+ +D  V WLW+SC++LKKL 
Sbjct:   180 CSTS---SPAFDFYPKSK--PNPEV-VELGLESVSLFGIQPDDNDVTWLWKSCRKLKKLS 233

Query:   224 LKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSR 283
             L+SC  IG+         C + LEE++LRTCRSIVDVVLL ++E C+SL SLL++DG S+
Sbjct:   234 LRSCGSIGE-----EIGLCLKNLEEIELRTCRSIVDVVLLKVSEICESLKSLLIHDGGSK 288

Query:   284 EGLLQFISHCRCXXXXXXXXXXXXXXXV--HLSAVAVKFRGLSVLRLQSCCLVSGDGLKA 341
             +GL+QF+S+ RC                  HL ++A  F+ LS LRL SC  V+G  LKA
Sbjct:   289 DGLVQFMSNARCYDTLERLDLRLPMDLTDDHLVSLAANFKCLSTLRLTSCIFVTGFSLKA 348

Query:   342 LGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSC 401
             L ++ SS LEEL+L++C+ ++RE GLLA++GQ+L +LRKLDL+ NE L DKE ++ML SC
Sbjct:   349 LALSFSSSLEELSLLSCNAIERERGLLATIGQHLGRLRKLDLTRNEWLFDKEVVSMLASC 408

Query:   402 NYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEV 461
             N L E+ LR CK LT   +V+++K+C +L+T+DI+ C  +  + VE FV+ +  L+++ V
Sbjct:   409 NGLVEVVLRDCKHLTGAVLVALNKNCVKLKTLDILGCRLIEPDDVEGFVMKTQCLKKLVV 468

Query:   462 DENKLSDVVRTWASQKFIEVVV 483
             +EN++++ +   AS KFIE VV
Sbjct:   469 EENQITEAILKLASSKFIETVV 490

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0031348 "negative regulation of defense response" evidence=RCA

TAIR\|locus:505006471 AT4G15475 "AT4G15475" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2149805 AT5G01720 "AT5G01720" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000017608 grrA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

TAIR\|locus:2143320 AT5G27920 "AT5G27920" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

MGI\|MGI:1919429 Fbxl2 "F-box and leucine-rich repeat protein 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

MGI\|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

TAIR\|locus:2166978 AT5G23340 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		483
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	9e-08
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	7e-06
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	5e-04
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	0.001

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 348 SGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTEL 407
           SGLE L L  C + D     L     N  +L+KL L  ++++ D+  +A+  SC  L  L
Sbjct: 28  SGLEWLELYMCPISDPPLDQL----SNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVL 83

Query: 408 KLRGCKGLTSMAVVSMSKSCKRLQTVDI 435
            LR C+ +T   +V+++ +C +LQT+++
Sbjct: 84  DLRACENITDSGIVALATNCPKLQTINL 111

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		483
KOG4341		483	consensus F-box protein containing LRR [General fu	100.0
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.93
KOG4341		483	consensus F-box protein containing LRR [General fu	99.92
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.81
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.8
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.72
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.69
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.66
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.61
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.49
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.48
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.48
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.47
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.41
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.31
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.3
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.1
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.1
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.09
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.01
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.87
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.85
PF12937		47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.78
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.68
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.67
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.67
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.57
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.53
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.49
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.45
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.44
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.43
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.38
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.37
smart00256		41	FBOX A Receptor for Ubiquitination Targets.	98.34
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.33
PF00646		48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.29
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.25
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.24
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.21
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.19
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.07
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	98.01
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	97.9
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.6
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.56
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.16
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.16
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.08
KOG0617		264	consensus Ras suppressor protein (contains leucine	96.96
KOG4308		478	consensus LRR-containing protein [Function unknown	96.96
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	96.81
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.79
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.79
KOG0617		264	consensus Ras suppressor protein (contains leucine	96.69
KOG4308		478	consensus LRR-containing protein [Function unknown	96.67
PLN03150		623	hypothetical protein; Provisional	96.66
PRK15386		426	type III secretion protein GogB; Provisional	96.62
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.51
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.5
PRK15386		426	type III secretion protein GogB; Provisional	96.42
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	96.3
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.08
PLN03150		623	hypothetical protein; Provisional	96.06
KOG2123		388	consensus Uncharacterized conserved protein [Funct	95.97
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	95.33
PLN03215		373	ascorbic acid mannose pathway regulator 1; Provisi	95.3
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	94.88
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	94.82
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.68
KOG2997		366	consensus F-box protein FBX9 [General function pre	94.45
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	94.4
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	94.22
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.05
PF13013		109	F-box-like_2: F-box-like domain	91.78
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	91.43
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	91.27
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	90.98
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	89.72
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	88.92
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	88.91
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.14
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	87.47
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	83.39
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	83.31

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=1.1e-35  Score=260.72  Aligned_cols=385  Identities=26%  Similarity=0.365  Sum_probs=291.6

Q ss_pred             cccchHHHHHHHHhcCCCCCCCCchhhhhhhHHHHHHHhcccccceeeecCC--CchhhhHHHhhcCC-CCeeEeeeeec
Q 037505            2 ENMLCDELLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYRASKTSLSLRIIPD--NSMVFSVSSLLSNY-PFVSSLSVALS   78 (483)
Q Consensus         2 ~~~LP~eil~~If~~L~~~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~l~~l~l~~~   78 (483)
                      +-.||+|++.+||++|+.+   .+++++.+|+.|...+....-|-++++...  +.....+..+.+++ .+++.+.++  
T Consensus        72 ~~~LPpEl~lkvFS~LDtk---sl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlr--  146 (483)
T KOG4341|consen   72 SRSLPPELLLKVFSMLDTK---SLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLR--  146 (483)
T ss_pred             cccCCHHHHHHHHHHHhHH---HHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhcccccccccc--
Confidence            3479999999999999999   999999999999999765555555543222  22233455566655 688999998  


Q ss_pred             ccccccccccCCCCcccchhHHHHHhcCCCCceEEccCC-ccchhHHHHHHHhCCcCcEEeccCchhh---HHHHH-hcC
Q 037505           79 SSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAG-PVSVSSLLSLSEACNHLTSLTVSLSRPL---YFNWV-ASF  153 (483)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~---~~~~l-~~~  153 (483)
                                 ++..+.+..+..+...||++++|.+.++ .+++..+..+++.|++|+.|++..|..+   .++.+ ..|
T Consensus       147 -----------G~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC  215 (483)
T KOG4341|consen  147 -----------GCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC  215 (483)
T ss_pred             -----------ccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence                       7888899999999999999999999999 8999999999999999999988876543   23322 255


Q ss_pred             CCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCch
Q 037505          154 SCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDG  233 (483)
Q Consensus       154 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~  233 (483)
                      ++|++|++++|+.                                     ++..++..+..++..++.+...+|......
T Consensus       216 ~kL~~lNlSwc~q-------------------------------------i~~~gv~~~~rG~~~l~~~~~kGC~e~~le  258 (483)
T KOG4341|consen  216 RKLKYLNLSWCPQ-------------------------------------ISGNGVQALQRGCKELEKLSLKGCLELELE  258 (483)
T ss_pred             hhHHHhhhccCch-------------------------------------hhcCcchHHhccchhhhhhhhcccccccHH
Confidence            5555555555533                                     122334444444555555544455544444


Q ss_pred             hHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHH
Q 037505          234 GSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHL  313 (483)
Q Consensus       234 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  313 (483)
                      .+... ...++-+.++++..|..++|..+..+...|                        . .|+.|+.++|+++++..+
T Consensus       259 ~l~~~-~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c------------------------~-~lq~l~~s~~t~~~d~~l  312 (483)
T KOG4341|consen  259 ALLKA-AAYCLEILKLNLQHCNQLTDEDLWLIACGC------------------------H-ALQVLCYSSCTDITDEVL  312 (483)
T ss_pred             HHHHH-hccChHhhccchhhhccccchHHHHHhhhh------------------------h-HhhhhcccCCCCCchHHH
Confidence            33322 222244444444455444444444443333                        2 688888888999999999


Q ss_pred             HHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHH
Q 037505          314 SAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKE  393 (483)
Q Consensus       314 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~  393 (483)
                      .++..++++|+.+.+++|..+++.+++.++..+. .|+.+++..|....+.  -+..+..+||.|+.+.++.|..++|++
T Consensus       313 ~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~-~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~g  389 (483)
T KOG4341|consen  313 WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP-HLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEG  389 (483)
T ss_pred             HHHhcCCCceEEEeccccchhhhhhhhhhhcCCh-hhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhh
Confidence            9999999999999999999999999999987655 9999999999877764  277788899999999999999999998


Q ss_pred             HHHHHh---cCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcHH
Q 037505          394 FMAMLV---SCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDV  469 (483)
Q Consensus       394 ~~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~  469 (483)
                      +..+..   +...|..+.+.+|+.+++..++.+. .|++|+.+++..|..++..++..+..++|+++...+.+....+.
T Consensus       390 i~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~p~  467 (483)
T KOG4341|consen  390 IRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTPPG  467 (483)
T ss_pred             hhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhHHHHhhCccceehhhccCCCCcc
Confidence            877653   4679999999999999998887764 49999999999999999999999999999999888777666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>smart00256 FBOX A Receptor for Ubiquitination Targets	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>KOG2997 consensus F-box protein FBX9 [General function prediction only]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>PF13013 F-box-like_2: F-box-like domain	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		483
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	3e-41
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	1e-34
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	1e-08
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	6e-05
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-17
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	4e-13
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-12
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	3e-09
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-11
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-07
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-07
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-04
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	7e-04
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-07
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-07
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

 Score =  154 bits (391), Expect = 3e-41
 Identities = 87/508 (17%), Positives = 182/508 (35%), Gaps = 57/508 (11%)

Query: 1   MENMLCDELLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYRASKTSLSLRIIPDNSMVFSV 60
           +     +E+L+ +F+ +      +S+S  LV K W  + R  +  + +     N    S 
Sbjct: 5   IALSFPEEVLEHVFSFIQLDKDRNSVS--LVCKSWYEIERWCRRKVFIG----NCYAVSP 58

Query: 61  SSLLSNYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVS 120
           ++++  +P V S+ +      +           +    +  +SSS + L+ +R     V+
Sbjct: 59  ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT 118

Query: 121 VSSLLSLSEACNHLTSLTVS----LSRPLYFNWVASFSCLKELSVYACDADEVENEVFRR 176
              L  ++++  +   L +S     S        A+   LKEL +   D D+V       
Sbjct: 119 DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178

Query: 177 YGET---------GLCSNEEIDTVL--------GLESLCLSGIRSEDTGVGWLWRSCKRL 219
           + +T            ++E   + L         L+SL L+        +  L +   +L
Sbjct: 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP-LEKLATLLQRAPQL 237

Query: 220 KKLQLKSCSGIGDGGSFANFVKCSQGLEEVK-LRTCRSIVDVVLLNLAENCDSLNSL-LV 277
           ++L     +       ++       G +E++ L      V   L  +   C  L +L L 
Sbjct: 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297

Query: 278 YDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRL--------Q 329
           Y       L++ +  C   LQ+L +     + +  L  +A   + L  LR+        +
Sbjct: 298 YATVQSYDLVKLLCQCP-KLQRLWVL--DYIEDAGLEVLASTCKDLRELRVFPSEPFVME 354

Query: 330 SCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEM- 388
               ++  GL ++ +     LE +      + +     L ++ +N   + +  L   E  
Sbjct: 355 PNVALTEQGLVSVSMGCPK-LESVLYFCRQMTNAA---LITIARNRPNMTRFRLCIIEPK 410

Query: 389 --------LLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCR 440
                    LD  F A++  C  L  L L G   LT      +    K+++ + +     
Sbjct: 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSV-AFAG 467

Query: 441 VGAEAVELFVLNSPQLRRVEVDENKLSD 468
                +   +     LR++E+ +    D
Sbjct: 468 DSDLGMHHVLSGCDSLRKLEIRDCPFGD 495

PyMOL of 2p1m

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		483
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	100.0
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.97
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.97
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.95
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.87
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.85
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.83
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.83
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.82
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.81
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.81
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.8
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.8
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.79
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.79
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.78
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.78
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.78
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.78
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.78
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.77
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.75
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.75
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.74
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.74
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.73
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.73
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.72
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.71
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.71
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.7
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.7
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.7
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.7
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.69
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.68
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.68
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.67
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.67
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.67
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.66
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.65
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.63
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.63
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.57
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.55
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.52
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.51
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.51
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.5
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.49
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.48
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.48
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.46
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.45
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.45
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.43
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.41
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.41
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.39
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.39
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.38
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.38
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.38
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.36
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.36
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.34
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.34
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.33
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.33
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.33
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.32
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.3
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.27
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.27
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.25
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.21
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.21
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.2
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.2
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.14
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.14
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.13
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.09
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.07
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	99.04
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	99.01
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	98.98
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.96
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	98.96
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	98.96
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	98.95
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	98.95
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	98.92
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	98.89
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	98.87
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	98.86
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.85
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	98.84
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	98.82
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.81
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.78
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	98.76
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.75
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.68
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.67
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	98.67
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.65
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	98.64
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.64
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.59
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.56
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.55
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.49
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.46
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.46
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.43
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.42
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.41
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.39
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.39
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.39
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.36
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.35
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.34
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.33
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.33
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.23
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.2
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.19
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.17
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.13
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.13
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	98.08
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	98.01
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.98
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	97.98
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	97.93
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.84
3l2o_B		312	F-box only protein 4; small G protein fold, UBL co	97.83
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.81
2e31_A		297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.63
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.54
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.48
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.41
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.38
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.35
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	97.29
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	97.24
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	97.09
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.07
3v7d_B		464	Cell division control protein 4; WD 40 domain, pho	97.06
1p22_A		435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.78
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	96.78
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	96.77
2ovr_B		445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.61
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	96.44
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.35
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	95.56
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	88.31
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	82.78

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

Probab=100.00  E-value=5.2e-42  Score=345.90  Aligned_cols=446  Identities=16%  Similarity=0.212  Sum_probs=334.0

Q ss_pred             ccchHHHHHHHHhcC-CCCCCCCchhhhhhhHHHHHHHhcccccceeeecCCCchhhhHHHhhcCCCCeeEeeeeecccc
Q 037505            3 NMLCDELLQEIFTKL-PTTPSSSSLSVCLVSKRWLNLYRASKTSLSLRIIPDNSMVFSVSSLLSNYPFVSSLSVALSSSE   81 (483)
Q Consensus         3 ~~LP~eil~~If~~L-~~~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~   81 (483)
                      ..||+|+|.+||+|| +.+   |+.++++|||+|+.+....+..+.+    ...+...+..++++++++++|+++.....
T Consensus        14 ~~LPdeil~~I~~~L~~~~---d~~~~s~vck~W~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~L~~L~L~~~~~~   86 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPK---DRDSASLVCRRWFKIDSETREHVTM----ALCYTATPDRLSRRFPNLRSLKLKGKPRA   86 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHH---HHHHHTTSCHHHHHHHHHHCCEEEE----SCGGGSCHHHHHHHCTTCSEEEEECSCGG
T ss_pred             CCCCHHHHHHHHHhcCCHH---HHHHHHHHhHHHHHhhhccccEEEE----eeccccChHHHHHhCCCCeEEEecCCcch
Confidence            469999999999999 777   9999999999999996554443333    23334446778889999999999721110


Q ss_pred             ---cccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCc-CcEEeccCchhh---HH-HHHhcC
Q 037505           82 ---STATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNH-LTSLTVSLSRPL---YF-NWVASF  153 (483)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~~---~~-~~l~~~  153 (483)
                         ..++   .........++..+...+++|++|+++++.+++..+..+...+++ |++|++.+|...   .. .....|
T Consensus        87 ~~~~~~~---~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~  163 (592)
T 3ogk_B           87 AMFNLIP---ENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHC  163 (592)
T ss_dssp             GGGTCSC---TTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHC
T ss_pred             hhccccc---ccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhC
Confidence               0000   012233445777787789999999999998888888888876776 999999988743   22 334589


Q ss_pred             CCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCC---hhHHHHHHHhCCCccEEecCCCCCC
Q 037505          154 SCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSE---DTGVGWLWRSCKRLKKLQLKSCSGI  230 (483)
Q Consensus       154 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~l~~~~~~  230 (483)
                      ++|++|++.+|.+.+..          ..........+++|++|+++++.++   ...+..+...+++|+.|++++|...
T Consensus       164 ~~L~~L~L~~~~~~~~~----------~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  233 (592)
T 3ogk_B          164 RKIKTLLMEESSFSEKD----------GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL  233 (592)
T ss_dssp             TTCSEEECTTCEEECCC----------SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred             CCCCEEECccccccCcc----------hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence            99999999998753221          1112223345566777777666553   4455555566666666666654311


Q ss_pred             C----------------------------------------------chhHHHHHhhccCCCcEEeCCCCCCCcHHHHHH
Q 037505          231 G----------------------------------------------DGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLN  264 (483)
Q Consensus       231 ~----------------------------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~  264 (483)
                      .                                              .....+.....+++|++|++++|. +++..+..
T Consensus       234 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~  312 (592)
T 3ogk_B          234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCT  312 (592)
T ss_dssp             GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHH
T ss_pred             HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHH
Confidence            0                                              001112223345799999999987 77888878


Q ss_pred             HHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccC----------CCCCCHHHHHHHHHcCCCCcEEEccCCCcc
Q 037505          265 LAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRL----------PLDLNNVHLSAVAVKFRGLSVLRLQSCCLV  334 (483)
Q Consensus       265 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~  334 (483)
                      +...+++|+.|++.++....++..+...++ +|++|++++          |+.+++.++..+...+++|++|.+ +|..+
T Consensus       313 ~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~-~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l  390 (592)
T 3ogk_B          313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCK-QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDI  390 (592)
T ss_dssp             HHTTCTTCCEEEEEGGGHHHHHHHHHHHCT-TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCC
T ss_pred             HHHhCcCCCEEeccCccCHHHHHHHHHhCC-CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCc
Confidence            888999999999996666777777777777 899999995          889999999988888999999999 45678


Q ss_pred             ChhhHHHHHHhcCCCCcEEecccc---ccccCc--chhHHHHHhcCCCCCEEecCCCc-CCCHHHHHHHHhcCCCCCEEE
Q 037505          335 SGDGLKALGVAMSSGLEELALINC---DVVDRE--PGLLASLGQNLKQLRKLDLSYNE-MLLDKEFMAMLVSCNYLTELK  408 (483)
Q Consensus       335 ~~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~~l~~~~~~L~~L~  408 (483)
                      ++.++..+...+ ++|+.|+++++   ...+..  ...+..+...+++|++|++++|. .+++..+..+...+++|+.|+
T Consensus       391 ~~~~~~~l~~~~-~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~  469 (592)
T 3ogk_B          391 TNESLESIGTYL-KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML  469 (592)
T ss_dssp             CHHHHHHHHHHC-CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred             cHHHHHHHHhhC-CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence            988888877544 49999999743   233321  01155667789999999998765 478999999888899999999


Q ss_pred             ecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcHHHHHHH
Q 037505          409 LRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDVVRTWA  474 (483)
Q Consensus       409 l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~~  474 (483)
                      +++|. +++.++..+...|++|++|++++|. +++.++..+...+++|+.|++++|++++.+....
T Consensus       470 L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l  533 (592)
T 3ogk_B          470 LGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM  533 (592)
T ss_dssp             ECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred             ccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence            99886 9999999988999999999999998 8998888888899999999999999999854443

PyMOL of 3ogk

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*	Back alignment and structure

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		483
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.003
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 330 SCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNE 387
            C  +S      L   +    + + L +C + +     ++S  +    L +L+L  NE
Sbjct: 10  QCEELSDARWAELLPLLQQ-CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

PyMOL of d1z7xw1

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		483
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.92
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.9
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.89
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.82
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.68
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.59
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.51
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.44
d1fs1a1		41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.09
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.09
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.97
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.93
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.88
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.88
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.77
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.77
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.74
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.72
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.71
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.71
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.67
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.66
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.64
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.63
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.62
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.6
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.6
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.58
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.5
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.49
d1nexb1		100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.42
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.41
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.39
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.39
d2ovrb1		102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.3
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.26
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.06
d1p22a1		118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.04
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.8
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	97.71
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	97.6
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.06
d2ifga3		156	High affinity nerve growth factor receptor, N-term	97.01
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.95
d2ifga3		156	High affinity nerve growth factor receptor, N-term	96.62

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9e-24  Score=188.76  Aligned_cols=258  Identities=17%  Similarity=0.226  Sum_probs=200.6

Q ss_pred             eEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCe
Q 037505          195 ESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNS  274 (483)
Q Consensus       195 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~  274 (483)
                      ++|++++..+....+..+...  .+..+.+.... +.. +.  .......+|++|++++| .+++..+..+...|++|++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~~--~~~~lrl~~~~-~~~-~~--~~~~~~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~   75 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSF-MDQ-PL--AEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQN   75 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHHT--TCSEEECTTCE-ECS-CC--CSCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSE
T ss_pred             CEEECCCCCCCchHHHHHHhc--cceEeeccccc-ccc-ch--hhhccCCCCCEEECCCC-ccCHHHHHHHHHhCCCccc
Confidence            367888877777677766553  34455554321 111 00  01122368999999986 5677888889999999999


Q ss_pred             EEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEe
Q 037505          275 LLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELA  354 (483)
Q Consensus       275 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  354 (483)
                      |+++++...+.....+..++ +|++|++++|..+++.++..+...+++|++|++++|..+++.++.......+++|+.|.
T Consensus        76 L~L~~~~l~~~~~~~l~~~~-~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~  154 (284)
T d2astb2          76 LSLEGLRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  154 (284)
T ss_dssp             EECTTCBCCHHHHHHHTTCT-TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             ccccccCCCcHHHHHHhcCC-CCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhh
Confidence            99998875555556666665 89999999999999999999999999999999999999999888766656667999999


Q ss_pred             ccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEe
Q 037505          355 LINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVD  434 (483)
Q Consensus       355 l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~  434 (483)
                      ++++...-...+ +..+...+|+|++|++++|..+++..+..+. .+++|++|++++|..+++.++..+. .+++|++|+
T Consensus       155 l~~~~~~i~~~~-l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i~~~~l~~L~-~~~~L~~L~  231 (284)
T d2astb2         155 LSGYRKNLQKSD-LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQ  231 (284)
T ss_dssp             CCSCGGGSCHHH-HHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEE
T ss_pred             hccccccccccc-ccccccccccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCCChHHHHHHh-cCCCCCEEe
Confidence            998754222222 6667788999999999999989998877765 7899999999999999998887764 489999999


Q ss_pred             ccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcH
Q 037505          435 IMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSD  468 (483)
Q Consensus       435 l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~  468 (483)
                      +++|  +++.++..+.+.||+|+.   .++.+++
T Consensus       232 l~~~--~~d~~l~~l~~~lp~L~i---~~~~ls~  260 (284)
T d2astb2         232 VFGI--VPDGTLQLLKEALPHLQI---NCSHFTT  260 (284)
T ss_dssp             CTTS--SCTTCHHHHHHHSTTSEE---SCCCSCC
T ss_pred             eeCC--CCHHHHHHHHHhCccccc---cCccCCC
Confidence            9998  788899999888999873   4555554

PyMOL of d2astb2

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure