Citrus Sinensis ID: 037525

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGDYQ
Secondary Structure (PSIPRED)
cEEEEcccccHHHHHHHHHHHccEEEEEEEEcccccccccccccccEEEccEEEEEcccEEEEEcccEEEccEEEEccccccccccccccccEEcccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccEEcccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEcccEEEEccccEEEEEcccEEEEEEEEEEcccEEEccccccccEEEEEcccccccHHccccccccccEEEEEcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccEccccccc
Coil and Loop (DISEMBL)
VIILVGSSASAVDICRDLAGVAKEVHLVSRsvadgtyekqpgfdnmWLHSMIESAHDNGAVVFRNGHTVHADVILHctgykyhfpfletngivtmddnrvgplykhvfppvlapwlsfvglpwkvipfplceyqskWIAGVLsgqivlpsqeemMEDTKAFYSTleasgtpkrythnmgdyq
Flexible Loop (DISEMBL)
viilvgssasavDICRDLAGVAKEVHlvsrsvadgtyeKQPGFDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYStleasgtpkrythnmgdyq
Low Complexity Region (SEG)
VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGDYQ
Disordered region (IsUnstruct)
*IILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLP*********************************
Disordered Region (DISOPRED)
VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMG*Y*
Disordered Region (DISEMBL)
VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGDYQ
Disordered Region (DISPRO)
VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTH******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGDYQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
Q9FWW9	465	Flavin-containing monooxy	yes	no	0.989	0.387	0.694	2e-74
Q9SXD5	450	Flavin-containing monooxy	no	no	1.0	0.404	0.664	6e-73
Q9C8U0	450	Flavin-containing monooxy	no	no	1.0	0.404	0.664	1e-72
Q94BV5	452	Flavin-containing monooxy	no	no	1.0	0.402	0.681	2e-72
A8MRX0	459	Flavin-containing monooxy	no	no	1.0	0.396	0.609	1e-65
Q9SXD9	464	Flavin-containing monooxy	no	no	0.917	0.359	0.678	1e-65
Q93Y23	461	Flavin-containing monooxy	no	no	1.0	0.394	0.573	6e-60
Q9C8T8	448	Putative flavin-containin	no	no	0.879	0.357	0.605	6e-58
Q9SS04	459	Flavin-containing monooxy	no	no	0.983	0.389	0.561	1e-57
Q9SXE1	462	Flavin-containing monooxy	no	no	1.0	0.393	0.551	3e-56

>sp|Q9FWW9|GSXL2_ARATH Flavin-containing monooxygenase FMO GS-OX-like 2 OS=Arabidopsis thaliana GN=At1g12200 PE=2 SV=1

 Score =  277 bits (709), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 125/180 (69%), Positives = 152/180 (84%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
           V+I++GSSAS VDICRD+A VAKEVH+ SRS +  TYEK  G++N+WLHS I+ A ++G+
Sbjct: 212 VVIVIGSSASGVDICRDIAQVAKEVHVSSRSTSPDTYEKLTGYENLWLHSTIQIAREDGS 271

Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
           VVF NG T++AD I+HCTGYKY+FPFL+T G VT+DDNRVGPLYKHVFPP LAP LSF+G
Sbjct: 272 VVFENGKTIYADTIMHCTGYKYYFPFLDTKGEVTVDDNRVGPLYKHVFPPALAPSLSFIG 331

Query: 121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
           LPW++ PFP+ E QSKW+A VLSG++ LPSQ+EMMEDTKAFY  LEASG PKRYTH M D
Sbjct: 332 LPWQITPFPMFELQSKWVAAVLSGRVSLPSQDEMMEDTKAFYDKLEASGIPKRYTHLMPD 391

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: -EC: .EC: -

>sp|Q9SXD5|GSXL3_ARATH Flavin-containing monooxygenase FMO GS-OX-like 3 OS=Arabidopsis thaliana GN=At1g62620 PE=2 SV=2

 Score =  273 bits (697), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 121/182 (66%), Positives = 152/182 (83%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
           V++L+G+S+SA DI RD+A VAKEVH+  RS    T+ KQ G++N+W HSMIES H++G+
Sbjct: 210 VVVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQTGYNNLWTHSMIESVHEDGS 269

Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
           VV++NG T+  D+I+HCTGYKYHFPFL+TNGIVT+DDNRVGPLYK VFPP  APWLSF+G
Sbjct: 270 VVYQNGKTISVDIIMHCTGYKYHFPFLDTNGIVTVDDNRVGPLYKDVFPPAFAPWLSFIG 329

Query: 121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
           +PW+V+PFP+ E QSKWIAGVLSG+I LPS+E+MM + K FYSTLE  G PKRYTH MG+
Sbjct: 330 IPWQVLPFPMFELQSKWIAGVLSGRIPLPSKEDMMIEIKTFYSTLEVQGIPKRYTHRMGN 389

Query: 181 YQ 182
            Q
Sbjct: 390 TQ 391

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9C8U0|GSXL5_ARATH Flavin-containing monooxygenase FMO GS-OX-like 5 OS=Arabidopsis thaliana GN=At1g63370 PE=2 SV=2

 Score =  271 bits (694), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 121/182 (66%), Positives = 151/182 (82%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
           V +L+G+S+SA DI RD+A VAKEVH+  RS    T+ KQ G++N+W HSMIES H++G+
Sbjct: 210 VAVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQTGYNNLWTHSMIESVHEDGS 269

Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
           VV++NG T+  D+I+HCTGYKYHFPFL+TNGIVT+DDNRVGPLYK VFPP  APWLSF+G
Sbjct: 270 VVYQNGKTISVDIIMHCTGYKYHFPFLDTNGIVTVDDNRVGPLYKDVFPPAFAPWLSFIG 329

Query: 121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
           +PW+V+PFP+ E QSKWIAGVLSG+I LPS+E+MM + K FYSTLE  G PKRYTH MG+
Sbjct: 330 IPWQVLPFPMFELQSKWIAGVLSGRIPLPSKEDMMIEIKTFYSTLEVQGIPKRYTHRMGN 389

Query: 181 YQ 182
            Q
Sbjct: 390 TQ 391

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q94BV5|GSXL4_ARATH Flavin-containing monooxygenase FMO GS-OX-like 4 OS=Arabidopsis thaliana GN=At1g62600 PE=2 SV=1

 Score =  271 bits (692), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 124/182 (68%), Positives = 150/182 (82%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
           V++L+G+SASA DI RD+A VAKEVH+  RS A  TY ++PG+ N+W+HSMIES H++G+
Sbjct: 212 VVVLIGNSASADDISRDIARVAKEVHVACRSNAADTYIERPGYSNLWMHSMIESVHEDGS 271

Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
           VVF+NG T+  DVI+HCTGYKYHFPFLETNG VT+DDNRVGPLYK VF P  APWLSFVG
Sbjct: 272 VVFQNGKTISVDVIMHCTGYKYHFPFLETNGNVTVDDNRVGPLYKDVFSPAFAPWLSFVG 331

Query: 121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
           +PWKV+PFP+ E QSKWIAGVLSG+I LPS+E+MM + K  YSTL+A G  KRYTH MG 
Sbjct: 332 IPWKVVPFPMFELQSKWIAGVLSGRIPLPSKEDMMMEIKTLYSTLDAQGIAKRYTHQMGI 391

Query: 181 YQ 182
            Q
Sbjct: 392 SQ 393

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|A8MRX0|GSOX5_ARATH Flavin-containing monooxygenase FMO GS-OX5 OS=Arabidopsis thaliana GN=FMOGS-OX5 PE=2 SV=2

 Score =  248 bits (634), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 111/182 (60%), Positives = 140/182 (76%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
           V++++G+ AS  DI RD+ GVAKEVH+ SRS    TY K PG +N+WLHSMIES H++G 
Sbjct: 207 VVVVIGNFASGADISRDITGVAKEVHIASRSNPSKTYSKLPGSNNLWLHSMIESVHEDGT 266

Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
           +VF+NG  V AD I+HCTGYKYHFPFL TNG +T++DN VGPLY+HVFPP LAP LSF+G
Sbjct: 267 IVFQNGKVVQADTIVHCTGYKYHFPFLNTNGYITVEDNCVGPLYEHVFPPALAPGLSFIG 326

Query: 121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
           LPW  + F + E QSKW+A  LSG++ LPS+E+MMED  A+Y+  EA G PKRYTH +G 
Sbjct: 327 LPWMTLQFFMFELQSKWVAAALSGRVTLPSEEKMMEDVTAYYAKREAFGQPKRYTHRLGG 386

Query: 181 YQ 182
            Q
Sbjct: 387 GQ 388

Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates. Specific for 8-methylthiooctyl (8-MTO) glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9SXD9|GSXL7_ARATH Flavin-containing monooxygenase FMO GS-OX-like 7 OS=Arabidopsis thaliana GN=At1g62580 PE=2 SV=2

 Score =  248 bits (634), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 114/168 (67%), Positives = 138/168 (82%), Gaps = 1/168 (0%)

Query: 13  DICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRNGHTVHAD 72
           DI RD+A V KEVH+ SRS    TYEK PG+DN+WLHS IE+  ++G+VVF+NG TV+AD
Sbjct: 221 DISRDIANVTKEVHISSRSTKPETYEKLPGYDNLWLHSNIETVREDGSVVFKNGKTVYAD 280

Query: 73  VILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCE 132
            I+HCTGYKY+FPFL+T G VT++DNRVGPLYKHVFPP L+P LSF+GLPW+VIPFP+ E
Sbjct: 281 TIMHCTGYKYYFPFLDTKGEVTVEDNRVGPLYKHVFPPALSPGLSFIGLPWQVIPFPMFE 340

Query: 133 YQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
            QSKW+A VL+G++ LPSQEE MEDTK FY  LEAS  PKRYTH M +
Sbjct: 341 LQSKWVAAVLAGRVSLPSQEE-MEDTKMFYLKLEASCIPKRYTHLMAE 387

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q93Y23|GSOX4_ARATH Flavin-containing monooxygenase FMO GS-OX4 OS=Arabidopsis thaliana GN=FMOGS-OX4 PE=2 SV=1

 Score =  229 bits (585), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 105/183 (57%), Positives = 139/183 (75%), Gaps = 1/183 (0%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQP-GFDNMWLHSMIESAHDNG 59
           V++++G+ AS  DI RD++ VAKEVH+ SR+    T+EK+P   +N+W+HS I++AH++G
Sbjct: 206 VVVVIGNFASGADISRDISKVAKEVHIASRASKSNTFEKRPVPNNNLWMHSEIDTAHEDG 265

Query: 60  AVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFV 119
            +VF+NG  VHAD I+HCTGYKY+FPFLETN  + +DDNRV PLYKH+FPP LAP LSF+
Sbjct: 266 TIVFKNGKVVHADTIVHCTGYKYYFPFLETNNYMRVDDNRVEPLYKHIFPPALAPGLSFI 325

Query: 120 GLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMG 179
           GLP   + F + E QSKW+A VLSG++ LPS +EMM+D K  Y T EA G PKRYTH +G
Sbjct: 326 GLPAMGLQFYMFEVQSKWVAAVLSGRVTLPSVDEMMDDLKLSYETQEALGIPKRYTHKLG 385

Query: 180 DYQ 182
             Q
Sbjct: 386 KSQ 388

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9C8T8|GSXLX_ARATH Putative flavin-containing monooxygenase FMO GS-OX-like 10 OS=Arabidopsis thaliana GN=At1g63340 PE=5 SV=3

 Score =  223 bits (567), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 106/175 (60%), Positives = 129/175 (73%), Gaps = 15/175 (8%)

Query: 6   GSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRN 65
           GSS S VDI RD+  V KEVH+ SRS    TYEK  G+DN+WLHS IE+  ++G+VVF+N
Sbjct: 212 GSSVSGVDISRDIVNVTKEVHISSRSTKPETYEKLSGYDNLWLHSNIETVREDGSVVFKN 271

Query: 66  GHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV 125
           G TV+AD I+HCTGYKY+FPFL+T G VT++DNRVGPLYKHVFPP L+P LSF+GLPW+V
Sbjct: 272 GKTVYADTIMHCTGYKYYFPFLDTKGEVTVEDNRVGPLYKHVFPPALSPGLSFIGLPWQV 331

Query: 126 IPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
           I FP+ E QSKW+A VL+G+               FYS LEAS  PKRYTH M +
Sbjct: 332 ILFPMFELQSKWVAAVLAGR---------------FYSKLEASCIPKRYTHLMAE 371

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9SS04|GSOX1_ARATH Flavin-containing monooxygenase FMO GS-OX1 OS=Arabidopsis thaliana GN=FMOGS-OX1 PE=2 SV=1

 Score =  222 bits (565), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 101/180 (56%), Positives = 139/180 (77%), Gaps = 1/180 (0%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQP-GFDNMWLHSMIESAHDNG 59
           V++++G+ AS  DI RD+A VAKEVH+ SR+    TY+K P   +N+W+HS I+ AH +G
Sbjct: 206 VVVVIGNYASGADISRDIAKVAKEVHIASRASESDTYQKLPVPQNNLWVHSEIDFAHQDG 265

Query: 60  AVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFV 119
           +++F+NG  V+AD I+HCTGYKY+FPFLETNG + +++NRV PLYKHVF P LAP LSF+
Sbjct: 266 SILFKNGKVVYADTIVHCTGYKYYFPFLETNGYININENRVEPLYKHVFLPALAPSLSFI 325

Query: 120 GLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMG 179
           GLP   I F + E QSKW+A VLSG+++LPSQ++MMED   +Y+TL+  G PKR+TH +G
Sbjct: 326 GLPGMAIQFVMFEIQSKWVAAVLSGRVILPSQDKMMEDIIEWYATLDVLGIPKRHTHKLG 385

Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates. Able to S-oxygenate both desulfo- and intact 4-methylthiobutyl glucosinolates, but no activity with methionine, dihomomethionine or 5-methylthiopentaldoxime.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9SXE1|GSOX3_ARATH Flavin-containing monooxygenase FMO GS-OX3 OS=Arabidopsis thaliana GN=FMOGS-OX3 PE=2 SV=1

 Score =  217 bits (553), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 101/183 (55%), Positives = 139/183 (75%), Gaps = 1/183 (0%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK-QPGFDNMWLHSMIESAHDNG 59
           V++++G+ AS  DI RD+A VAKEVH+ SR+    TYEK     +N+W+HS I++ H++G
Sbjct: 207 VVVVIGNFASGADISRDIAKVAKEVHIASRAREPHTYEKISVPQNNLWMHSEIDTTHEDG 266

Query: 60  AVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFV 119
           ++VF+NG  + AD I++CTGYKY+FPFLETNG + +D+ RV PLYKHVFPP LAP L+FV
Sbjct: 267 SIVFKNGKVIFADSIVYCTGYKYNFPFLETNGYLRIDEKRVEPLYKHVFPPALAPGLAFV 326

Query: 120 GLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMG 179
           GLP   I F + E QSKW+A VLSG++ LPS ++MMED  A+Y++L+A G PKR+TH +G
Sbjct: 327 GLPAMGIVFVMFEIQSKWVAAVLSGRVTLPSTDKMMEDINAWYASLDALGIPKRHTHTIG 386

Query: 180 DYQ 182
             Q
Sbjct: 387 RIQ 389

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Prefers probably short-chain methylthioalkyl glucosinolates in cv. Landsberg erecta.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
224125168	459	predicted protein [Populus trichocarpa]	1.0	0.396	0.774	3e-81
255577823	423	dimethylaniline monooxygenase, putative	0.978	0.420	0.764	6e-79
255577829	510	dimethylaniline monooxygenase, putative	1.0	0.356	0.730	2e-78
255638856	257	unknown [Glycine max]	1.0	0.708	0.725	3e-74
356540456	448	PREDICTED: flavin-containing monooxygena	1.0	0.406	0.725	4e-74
356540458	460	PREDICTED: flavin-containing monooxygena	1.0	0.395	0.725	6e-74
224125164	452	predicted protein [Populus trichocarpa]	0.989	0.398	0.7	6e-73
255577827	374	dimethylaniline monooxygenase, putative	0.978	0.475	0.730	7e-73
169647195	361	hypothetical protein AP5_G04.1 [Arabidop	0.989	0.498	0.705	7e-73
357481971	471	Flavin-containing monooxygenase FMO GS-O	0.983	0.380	0.715	1e-72

>gi|224125168|ref|XP_002329910.1| predicted protein [Populus trichocarpa] gi|222871147|gb|EEF08278.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (782), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 141/182 (77%), Positives = 159/182 (87%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
           V IL+GSSAS+ DI R++AGVAKEVH+ SRSVAD TY++QPG+DNMWLHSMIES HD+G+
Sbjct: 219 VAILIGSSASSDDISREIAGVAKEVHVASRSVADETYQEQPGYDNMWLHSMIESVHDDGS 278

Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
           V+FRNG  V AD+ILHCTGYKYHFPFL+TNGIVTMD+NRV PLYK VFPPVLAPWLSFVG
Sbjct: 279 VIFRNGRVVVADIILHCTGYKYHFPFLDTNGIVTMDENRVAPLYKQVFPPVLAPWLSFVG 338

Query: 121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
           LPWKV+PFPL E Q+KWIAGVLSG I LPS EEMMED KAFY TLE+S  PK YTHN+G 
Sbjct: 339 LPWKVVPFPLVELQTKWIAGVLSGHIALPSPEEMMEDVKAFYETLESSNKPKHYTHNLGG 398

Query: 181 YQ 182
            Q
Sbjct: 399 CQ 400

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577823|ref|XP_002529785.1| dimethylaniline monooxygenase, putative [Ricinus communis] gi|223530729|gb|EEF32599.1| dimethylaniline monooxygenase, putative [Ricinus communis]

 Score =  298 bits (763), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 136/178 (76%), Positives = 159/178 (89%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
           V+IL+G + SA D+ R++AGVAKEVH+ SRSVAD TYE+QPG+DN+WLHSMIE  H++G+
Sbjct: 208 VVILIGCATSATDLSREIAGVAKEVHVASRSVADETYEEQPGYDNIWLHSMIECVHEDGS 267

Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
           VVFR+G  VHAD+IL CTGYKYHFPFLET GIVT+DDNRVGPLYKHVFPPVLAPWLSFVG
Sbjct: 268 VVFRSGRVVHADIILQCTGYKYHFPFLETKGIVTVDDNRVGPLYKHVFPPVLAPWLSFVG 327

Query: 121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNM 178
           +P+KVIPF + EYQSKWIAGVLSG+I LPS+EEMMED +AFY +LEAS TPKRYTH M
Sbjct: 328 IPFKVIPFRMFEYQSKWIAGVLSGRIELPSREEMMEDIEAFYLSLEASNTPKRYTHEM 385

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577829|ref|XP_002529788.1| dimethylaniline monooxygenase, putative [Ricinus communis] gi|223530732|gb|EEF32602.1| dimethylaniline monooxygenase, putative [Ricinus communis]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 133/182 (73%), Positives = 160/182 (87%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
           VI+++G++ S  D+  ++AGVAKEVH+VSRSV D T ++QPG+DN+WLHSMI+ +H++G 
Sbjct: 234 VIVIIGNANSTADLSVEIAGVAKEVHIVSRSVPDETNKRQPGYDNIWLHSMIKGSHEDGT 293

Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
           +VFR+G  + AD+ILHCTGYKYHFPFLET GIVT+DDNR+GPLYKHVFPPVLAPWLSFVG
Sbjct: 294 IVFRDGSVILADIILHCTGYKYHFPFLETRGIVTVDDNRLGPLYKHVFPPVLAPWLSFVG 353

Query: 121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
           +PWKVIPFP  E+QSKWIAGVLSG+I+LPSQEEMMED  AFYSTLEAS  PKRYTHNM  
Sbjct: 354 IPWKVIPFPQFEFQSKWIAGVLSGRILLPSQEEMMEDVNAFYSTLEASDMPKRYTHNMRK 413

Query: 181 YQ 182
           YQ
Sbjct: 414 YQ 415

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638856|gb|ACU19731.1| unknown [Glycine max]

 Score =  283 bits (723), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 132/182 (72%), Positives = 153/182 (84%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
           V++L+GSSASAVDI RD+A VAKEVH+ +RSV +    K PG +NMWLHSMI+S H++G 
Sbjct: 16  VVVLIGSSASAVDISRDIATVAKEVHIAARSVEEDKLGKVPGHENMWLHSMIDSVHEDGT 75

Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
           VVF++G+ V AD I+HCTGYKY FPFLETNG VT+DDNRVGPLYKHVFPP LAPWLSFVG
Sbjct: 76  VVFQDGNAVGADFIIHCTGYKYDFPFLETNGEVTVDDNRVGPLYKHVFPPALAPWLSFVG 135

Query: 121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
           LPWKV PF L E QSKWIAG+LS +I LPS+EEM +D  AFYS+LEASGTPKRYTHNMG 
Sbjct: 136 LPWKVAPFSLFELQSKWIAGILSNRIALPSKEEMAKDVDAFYSSLEASGTPKRYTHNMGI 195

Query: 181 YQ 182
            Q
Sbjct: 196 LQ 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540456|ref|XP_003538705.1| PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 3-like isoform 1 [Glycine max]

 Score =  282 bits (721), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 132/182 (72%), Positives = 153/182 (84%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
           V++L+GSSASAVDI RD+A VAKEVH+ +RSV +    K PG +NMWLHSMI+S H++G 
Sbjct: 207 VVVLIGSSASAVDISRDIATVAKEVHIAARSVEEDKLGKVPGHENMWLHSMIDSVHEDGT 266

Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
           VVF++G+ V AD I+HCTGYKY FPFLETNG VT+DDNRVGPLYKHVFPP LAPWLSFVG
Sbjct: 267 VVFQDGNAVGADFIIHCTGYKYDFPFLETNGEVTVDDNRVGPLYKHVFPPALAPWLSFVG 326

Query: 121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
           LPWKV PF L E QSKWIAG+LS +I LPS+EEM +D  AFYS+LEASGTPKRYTHNMG 
Sbjct: 327 LPWKVAPFSLFELQSKWIAGILSNRIALPSKEEMAKDVDAFYSSLEASGTPKRYTHNMGI 386

Query: 181 YQ 182
            Q
Sbjct: 387 LQ 388

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540458|ref|XP_003538706.1| PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 3-like isoform 2 [Glycine max]

 Score =  281 bits (720), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 132/182 (72%), Positives = 153/182 (84%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
           V++L+GSSASAVDI RD+A VAKEVH+ +RSV +    K PG +NMWLHSMI+S H++G 
Sbjct: 219 VVVLIGSSASAVDISRDIATVAKEVHIAARSVEEDKLGKVPGHENMWLHSMIDSVHEDGT 278

Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
           VVF++G+ V AD I+HCTGYKY FPFLETNG VT+DDNRVGPLYKHVFPP LAPWLSFVG
Sbjct: 279 VVFQDGNAVGADFIIHCTGYKYDFPFLETNGEVTVDDNRVGPLYKHVFPPALAPWLSFVG 338

Query: 121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
           LPWKV PF L E QSKWIAG+LS +I LPS+EEM +D  AFYS+LEASGTPKRYTHNMG 
Sbjct: 339 LPWKVAPFSLFELQSKWIAGILSNRIALPSKEEMAKDVDAFYSSLEASGTPKRYTHNMGI 398

Query: 181 YQ 182
            Q
Sbjct: 399 LQ 400

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125164|ref|XP_002329909.1| predicted protein [Populus trichocarpa] gi|222871146|gb|EEF08277.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (712), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 126/180 (70%), Positives = 157/180 (87%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
           V+IL+GSSASA+D+  ++ G+AKEVH+ SRSVA+ TYEK+   DN+WLHSMI+SAH +G+
Sbjct: 212 VVILIGSSASAIDLSLEIGGIAKEVHIASRSVANDTYEKRAECDNIWLHSMIKSAHKDGS 271

Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
           V FR+G+T+ AD+ILHCTGYKY+FPFL+TNGIVT+DDNRVGPLYKHVFPP+ AP LSFVG
Sbjct: 272 VAFRDGNTIVADIILHCTGYKYYFPFLKTNGIVTVDDNRVGPLYKHVFPPIFAPQLSFVG 331

Query: 121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
           LP++ +PFP+ E QSKWI+GVLS +IVLPSQE+MMED   FYSTLE SG PK +TH+MGD
Sbjct: 332 LPYRSLPFPIFEIQSKWISGVLSDRIVLPSQEDMMEDVNTFYSTLEDSGVPKHHTHSMGD 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577827|ref|XP_002529787.1| dimethylaniline monooxygenase, putative [Ricinus communis] gi|223530731|gb|EEF32601.1| dimethylaniline monooxygenase, putative [Ricinus communis]

 Score =  278 bits (711), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 130/178 (73%), Positives = 154/178 (86%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
           V+IL+G + SA D+ R++AGVAKEVH+ SRSVAD TYE QPG+DN+WLHSMIES H++G+
Sbjct: 126 VVILIGCATSATDLSREIAGVAKEVHVASRSVADETYEDQPGYDNIWLHSMIESVHEDGS 185

Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
            VFR+G  V AD+ILHCTGYKYHFPFLET GIVT+DDNRVGPL+KHVFPPVLAP LSFVG
Sbjct: 186 AVFRSGRVVRADIILHCTGYKYHFPFLETKGIVTVDDNRVGPLHKHVFPPVLAPGLSFVG 245

Query: 121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNM 178
           +P KVI F +  YQSKWIAGVLSG+I LPS EEMM+D +AFY +LEAS TPKR+TH+M
Sbjct: 246 IPSKVITFQMFGYQSKWIAGVLSGRIELPSVEEMMDDIEAFYLSLEASNTPKRHTHDM 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|169647195|gb|ACA61617.1| hypothetical protein AP5_G04.1 [Arabidopsis lyrata subsp. petraea]

 Score =  278 bits (711), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 127/180 (70%), Positives = 150/180 (83%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
           V+I++GSSAS VDICRD+A VAKEVH+ SRS +  TYEK  G+DN+WLHS IE A ++ +
Sbjct: 108 VVIVIGSSASGVDICRDIAQVAKEVHVSSRSTSPETYEKLTGYDNLWLHSTIEIAREDAS 167

Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
           VVF NG TV AD I+HCTGYKY+FPFL+T G VT+DDNRVGPLYKHVFPP LAP LSF+G
Sbjct: 168 VVFENGKTVFADTIMHCTGYKYYFPFLDTKGEVTVDDNRVGPLYKHVFPPALAPSLSFIG 227

Query: 121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
           LPW++ PFP+ E QSKW+A VLSG++ LPSQ+EMMEDTKAFY  LEASG PKRYTH M D
Sbjct: 228 LPWQITPFPMFELQSKWVAAVLSGRVSLPSQDEMMEDTKAFYDKLEASGIPKRYTHLMPD 287

Source: Arabidopsis lyrata subsp. petraea

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481971|ref|XP_003611271.1| Flavin-containing monooxygenase FMO GS-OX5 [Medicago truncatula] gi|355512606|gb|AES94229.1| Flavin-containing monooxygenase FMO GS-OX5 [Medicago truncatula]

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 128/179 (71%), Positives = 151/179 (84%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
           V++L+G +ASAVDI RD+A VAKEVH+ +RSV +    K PG DNMWLHSMI+S H++GA
Sbjct: 226 VVVLIGGAASAVDISRDVATVAKEVHIAARSVEEDKLGKLPGHDNMWLHSMIDSVHEDGA 285

Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
           VVF++G+ V AD I+HCTGYKY FPFLETN +VT+DDNRVGPLYKHVFPP LAPWLSFVG
Sbjct: 286 VVFKDGNAVIADFIVHCTGYKYDFPFLETNSVVTVDDNRVGPLYKHVFPPALAPWLSFVG 345

Query: 121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMG 179
           LPWKV PFPL E QSKWIAGVLS +I LPS+EEM +D +AFY +LE SG PKR+THNMG
Sbjct: 346 LPWKVAPFPLFELQSKWIAGVLSNRIALPSEEEMTKDIEAFYLSLEESGIPKRHTHNMG 404

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:2201991	465	FMO "AT1G12200" [Arabidopsis t	0.989	0.387	0.694	1.8e-69
TAIR|locus:2203866	450	AT1G62620 "AT1G62620" [Arabido	1.0	0.404	0.664	1.3e-68
TAIR|locus:2031336	450	AT1G63370 "AT1G63370" [Arabido	1.0	0.404	0.664	3.5e-68
TAIR|locus:2203921	452	AT1G62600 "AT1G62600" [Arabido	0.983	0.396	0.687	4.4e-68
TAIR|locus:2203911	464	NOGC1 "AT1G62580" [Arabidopsis	0.983	0.385	0.666	9.4e-66
TAIR|locus:2201971	459	FMO GS-OX5 "flavin-monooxygena	1.0	0.396	0.609	2.3e-62
TAIR|locus:2203901	461	FMO GS-OX4 "AT1G62570" [Arabid	1.0	0.394	0.573	2.8e-57
TAIR|locus:2009754	459	FMO GS-OX1 "AT1G65860" [Arabid	0.983	0.389	0.561	3.7e-55
TAIR|locus:2203891	462	FMO GS-OX3 "AT1G62560" [Arabid	1.0	0.393	0.551	1.5e-53
TAIR|locus:2203871	457	FMO GS-OX2 "AT1G62540" [Arabid	1.0	0.398	0.551	2.4e-53

TAIR|locus:2201991 FMO "AT1G12200" [Arabidopsis thaliana (taxid:3702)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 125/180 (69%), Positives = 152/180 (84%)

Query:     1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
             V+I++GSSAS VDICRD+A VAKEVH+ SRS +  TYEK  G++N+WLHS I+ A ++G+
Sbjct:   212 VVIVIGSSASGVDICRDIAQVAKEVHVSSRSTSPDTYEKLTGYENLWLHSTIQIAREDGS 271

Query:    61 VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
             VVF NG T++AD I+HCTGYKY+FPFL+T G VT+DDNRVGPLYKHVFPP LAP LSF+G
Sbjct:   272 VVFENGKTIYADTIMHCTGYKYYFPFLDTKGEVTVDDNRVGPLYKHVFPPALAPSLSFIG 331

Query:   121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
             LPW++ PFP+ E QSKW+A VLSG++ LPSQ+EMMEDTKAFY  LEASG PKRYTH M D
Sbjct:   332 LPWQITPFPMFELQSKWVAAVLSGRVSLPSQDEMMEDTKAFYDKLEASGIPKRYTHLMPD 391

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2203866 AT1G62620 "AT1G62620" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 121/182 (66%), Positives = 152/182 (83%)

Query:     1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
             V++L+G+S+SA DI RD+A VAKEVH+  RS    T+ KQ G++N+W HSMIES H++G+
Sbjct:   210 VVVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQTGYNNLWTHSMIESVHEDGS 269

Query:    61 VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
             VV++NG T+  D+I+HCTGYKYHFPFL+TNGIVT+DDNRVGPLYK VFPP  APWLSF+G
Sbjct:   270 VVYQNGKTISVDIIMHCTGYKYHFPFLDTNGIVTVDDNRVGPLYKDVFPPAFAPWLSFIG 329

Query:   121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
             +PW+V+PFP+ E QSKWIAGVLSG+I LPS+E+MM + K FYSTLE  G PKRYTH MG+
Sbjct:   330 IPWQVLPFPMFELQSKWIAGVLSGRIPLPSKEDMMIEIKTFYSTLEVQGIPKRYTHRMGN 389

Query:   181 YQ 182
              Q
Sbjct:   390 TQ 391

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2031336 AT1G63370 "AT1G63370" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 121/182 (66%), Positives = 151/182 (82%)

Query:     1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
             V +L+G+S+SA DI RD+A VAKEVH+  RS    T+ KQ G++N+W HSMIES H++G+
Sbjct:   210 VAVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQTGYNNLWTHSMIESVHEDGS 269

Query:    61 VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
             VV++NG T+  D+I+HCTGYKYHFPFL+TNGIVT+DDNRVGPLYK VFPP  APWLSF+G
Sbjct:   270 VVYQNGKTISVDIIMHCTGYKYHFPFLDTNGIVTVDDNRVGPLYKDVFPPAFAPWLSFIG 329

Query:   121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
             +PW+V+PFP+ E QSKWIAGVLSG+I LPS+E+MM + K FYSTLE  G PKRYTH MG+
Sbjct:   330 IPWQVLPFPMFELQSKWIAGVLSGRIPLPSKEDMMIEIKTFYSTLEVQGIPKRYTHRMGN 389

Query:   181 YQ 182
              Q
Sbjct:   390 TQ 391

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2203921 AT1G62600 "AT1G62600" [Arabidopsis thaliana (taxid:3702)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 123/179 (68%), Positives = 149/179 (83%)

Query:     1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
             V++L+G+SASA DI RD+A VAKEVH+  RS A  TY ++PG+ N+W+HSMIES H++G+
Sbjct:   212 VVVLIGNSASADDISRDIARVAKEVHVACRSNAADTYIERPGYSNLWMHSMIESVHEDGS 271

Query:    61 VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
             VVF+NG T+  DVI+HCTGYKYHFPFLETNG VT+DDNRVGPLYK VF P  APWLSFVG
Sbjct:   272 VVFQNGKTISVDVIMHCTGYKYHFPFLETNGNVTVDDNRVGPLYKDVFSPAFAPWLSFVG 331

Query:   121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMG 179
             +PWKV+PFP+ E QSKWIAGVLSG+I LPS+E+MM + K  YSTL+A G  KRYTH MG
Sbjct:   332 IPWKVVPFPMFELQSKWIAGVLSGRIPLPSKEDMMMEIKTLYSTLDAQGIAKRYTHQMG 390

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2203911 NOGC1 "AT1G62580" [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 120/180 (66%), Positives = 148/180 (82%)

Query:     1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
             V++++GSS S VDI RD+A V KEVH+ SRS    TYEK PG+DN+WLHS IE+  ++G+
Sbjct:   209 VVVVIGSSVSGVDISRDIANVTKEVHISSRSTKPETYEKLPGYDNLWLHSNIETVREDGS 268

Query:    61 VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
             VVF+NG TV+AD I+HCTGYKY+FPFL+T G VT++DNRVGPLYKHVFPP L+P LSF+G
Sbjct:   269 VVFKNGKTVYADTIMHCTGYKYYFPFLDTKGEVTVEDNRVGPLYKHVFPPALSPGLSFIG 328

Query:   121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
             LPW+VIPFP+ E QSKW+A VL+G++ LPSQEEM EDTK FY  LEAS  PKRYTH M +
Sbjct:   329 LPWQVIPFPMFELQSKWVAAVLAGRVSLPSQEEM-EDTKMFYLKLEASCIPKRYTHLMAE 387

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0031227 "intrinsic to endoplasmic reticulum membrane" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0019825 "oxygen binding" evidence=IDA

GO:0070026 "nitric oxide binding" evidence=IDA

TAIR|locus:2201971 FMO GS-OX5 "flavin-monooxygenase glucosinolate S-oxygenase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 111/182 (60%), Positives = 140/182 (76%)

Query:     1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
             V++++G+ AS  DI RD+ GVAKEVH+ SRS    TY K PG +N+WLHSMIES H++G 
Sbjct:   207 VVVVIGNFASGADISRDITGVAKEVHIASRSNPSKTYSKLPGSNNLWLHSMIESVHEDGT 266

Query:    61 VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVG 120
             +VF+NG  V AD I+HCTGYKYHFPFL TNG +T++DN VGPLY+HVFPP LAP LSF+G
Sbjct:   267 IVFQNGKVVQADTIVHCTGYKYHFPFLNTNGYITVEDNCVGPLYEHVFPPALAPGLSFIG 326

Query:   121 LPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMGD 180
             LPW  + F + E QSKW+A  LSG++ LPS+E+MMED  A+Y+  EA G PKRYTH +G 
Sbjct:   327 LPWMTLQFFMFELQSKWVAAALSGRVTLPSEEKMMEDVTAYYAKREAFGQPKRYTHRLGG 386

Query:   181 YQ 182
              Q
Sbjct:   387 GQ 388

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

TAIR|locus:2203901 FMO GS-OX4 "AT1G62570" [Arabidopsis thaliana (taxid:3702)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 105/183 (57%), Positives = 139/183 (75%)

Query:     1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQP-GFDNMWLHSMIESAHDNG 59
             V++++G+ AS  DI RD++ VAKEVH+ SR+    T+EK+P   +N+W+HS I++AH++G
Sbjct:   206 VVVVIGNFASGADISRDISKVAKEVHIASRASKSNTFEKRPVPNNNLWMHSEIDTAHEDG 265

Query:    60 AVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFV 119
              +VF+NG  VHAD I+HCTGYKY+FPFLETN  + +DDNRV PLYKH+FPP LAP LSF+
Sbjct:   266 TIVFKNGKVVHADTIVHCTGYKYYFPFLETNNYMRVDDNRVEPLYKHIFPPALAPGLSFI 325

Query:   120 GLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMG 179
             GLP   + F + E QSKW+A VLSG++ LPS +EMM+D K  Y T EA G PKRYTH +G
Sbjct:   326 GLPAMGLQFYMFEVQSKWVAAVLSGRVTLPSVDEMMDDLKLSYETQEALGIPKRYTHKLG 385

Query:   180 DYQ 182
               Q
Sbjct:   386 KSQ 388

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IDA

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IDA

TAIR|locus:2009754 FMO GS-OX1 "AT1G65860" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 101/180 (56%), Positives = 139/180 (77%)

Query:     1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQP-GFDNMWLHSMIESAHDNG 59
             V++++G+ AS  DI RD+A VAKEVH+ SR+    TY+K P   +N+W+HS I+ AH +G
Sbjct:   206 VVVVIGNYASGADISRDIAKVAKEVHIASRASESDTYQKLPVPQNNLWVHSEIDFAHQDG 265

Query:    60 AVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFV 119
             +++F+NG  V+AD I+HCTGYKY+FPFLETNG + +++NRV PLYKHVF P LAP LSF+
Sbjct:   266 SILFKNGKVVYADTIVHCTGYKYYFPFLETNGYININENRVEPLYKHVFLPALAPSLSFI 325

Query:   120 GLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMG 179
             GLP   I F + E QSKW+A VLSG+++LPSQ++MMED   +Y+TL+  G PKR+TH +G
Sbjct:   326 GLPGMAIQFVMFEIQSKWVAAVLSGRVILPSQDKMMEDIIEWYATLDVLGIPKRHTHKLG 385

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0033506 "glucosinolate biosynthetic process from homomethionine" evidence=IMP

GO:0080102 "3-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0080104 "5-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080105 "6-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080106 "7-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2203891 FMO GS-OX3 "AT1G62560" [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 101/183 (55%), Positives = 139/183 (75%)

Query:     1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK-QPGFDNMWLHSMIESAHDNG 59
             V++++G+ AS  DI RD+A VAKEVH+ SR+    TYEK     +N+W+HS I++ H++G
Sbjct:   207 VVVVIGNFASGADISRDIAKVAKEVHIASRAREPHTYEKISVPQNNLWMHSEIDTTHEDG 266

Query:    60 AVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFV 119
             ++VF+NG  + AD I++CTGYKY+FPFLETNG + +D+ RV PLYKHVFPP LAP L+FV
Sbjct:   267 SIVFKNGKVIFADSIVYCTGYKYNFPFLETNGYLRIDEKRVEPLYKHVFPPALAPGLAFV 326

Query:   120 GLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMG 179
             GLP   I F + E QSKW+A VLSG++ LPS ++MMED  A+Y++L+A G PKR+TH +G
Sbjct:   327 GLPAMGIVFVMFEIQSKWVAAVLSGRVTLPSTDKMMEDINAWYASLDALGIPKRHTHTIG 386

Query:   180 DYQ 182
               Q
Sbjct:   387 RIQ 389

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

GO:0080102 "3-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0080104 "5-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080105 "6-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080106 "7-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2203871 FMO GS-OX2 "AT1G62540" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 101/183 (55%), Positives = 140/183 (76%)

Query:     1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQP-GFDNMWLHSMIESAHDNG 59
             V++++G+ AS  DI RD+A VAKEVH+ SR+    TYEK P   +N+W+HS I++A+++G
Sbjct:   206 VVVVIGNFASGADISRDIAKVAKEVHIASRASEFDTYEKLPVPRNNLWIHSEIDTAYEDG 265

Query:    60 AVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFV 119
             ++VF+NG  V+AD I++CTGYKY F FLETNG + +D+NRV  LYKHVFPP L+P LSFV
Sbjct:   266 SIVFKNGKVVYADSIVYCTGYKYRFTFLETNGYMNIDENRVEHLYKHVFPPALSPGLSFV 325

Query:   120 GLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMG 179
             GLP   I F + E QSKW+A VLS ++ LP++++MMED  A+Y++L+A G PKRYTH +G
Sbjct:   326 GLPSMGIQFVMFEIQSKWVAAVLSRRVTLPTEDKMMEDISAWYASLDAVGIPKRYTHKLG 385

Query:   180 DYQ 182
               Q
Sbjct:   386 KIQ 388

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

GO:0080102 "3-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0080104 "5-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080106 "7-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
PLN02172	461	PLN02172, PLN02172, flavin-containing monooxygenas	5e-90
pfam00743	532	pfam00743, FMO-like, Flavin-binding monooxygenase-	1e-15
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	3e-04
TIGR04018	316	TIGR04018, Bthiol_YpdA, putative bacillithiol syst	0.001

>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX

 Score =  270 bits (691), Expect = 5e-90
 Identities = 109/183 (59%), Positives = 144/183 (78%), Gaps = 1/183 (0%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQP-GFDNMWLHSMIESAHDNG 59
           V++++G+ AS  DI RD+A VAKEVH+ SR+    TYEK P   +N+W+HS I++AH++G
Sbjct: 206 VVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVPQNNLWMHSEIDTAHEDG 265

Query: 60  AVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFV 119
           ++VF+NG  V+AD I+HCTGYKYHFPFLETNG + +D+NRV PLYKHVFPP LAP LSF+
Sbjct: 266 SIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFI 325

Query: 120 GLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMG 179
           GLP   I F + E QSKW+A VLSG++ LPS+++MMED  A+Y++LEA G PKRYTH +G
Sbjct: 326 GLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDINAWYASLEALGIPKRYTHKLG 385

Query: 180 DYQ 182
             Q
Sbjct: 386 KIQ 388

Length = 461

>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like

 Score = 73.3 bits (180), Expect = 1e-15
 Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 9/103 (8%)

Query: 60  AVVFRNGHTVHA--DVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLA-PWL 116
           + +F +G TV    DV++  TGY + FPFLE   +V ++ N++  LYK+VFPP L  P L
Sbjct: 309 SAIFEDG-TVEEDIDVVIFATGYTFSFPFLE-ESLVKVETNKIS-LYKYVFPPNLEKPTL 365

Query: 117 SFVGL--PWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMED 157
           + +GL  P   I  P  E Q++W   V  G   LPS  +MME+
Sbjct: 366 AIIGLIQPLGSI-IPTVELQARWAVRVFKGLCKLPSSSKMMEE 407

This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 2   IILVGSSASAVDICRDLAGVAKEVHLVSRS 31
           ++++G+ ASAVDI  +LA V   V L  RS
Sbjct: 178 VLVIGAGASAVDIAPELAEVGASVTLSQRS 207

Length = 443

>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)

Query: 2   IILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---QPGFDN--------MWLHS 50
           +++VG S SAVD   +L     EV +V R     +  K   +P  +N         + +S
Sbjct: 155 VVVVGGSNSAVDAALELYRKGAEVTMVHRGDEVSSSVKYWVRPDIENRIKEGSIKAYFNS 214

Query: 51  MIESAHDNGAVVFRNG----HTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLY 104
            ++   ++ +V         HT+  D +   TGY+  F FLE+ G V +D++   P+Y
Sbjct: 215 RVKEITED-SVTLETPDGEVHTIPNDFVFALTGYRPDFEFLESLG-VELDEDTGIPVY 270

Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	100.0
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	100.0
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.92
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.59
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.5
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.46
PRK07846	451	mycothione reductase; Reviewed	99.45
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.43
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.42
PLN02507	499	glutathione reductase	99.42
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.4
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.38
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.38
PRK06116	450	glutathione reductase; Validated	99.37
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.35
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.35
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.35
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.34
PTZ00052	499	thioredoxin reductase; Provisional	99.34
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.34
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.33
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.33
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.33
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.32
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.3
PRK10262	321	thioredoxin reductase; Provisional	99.29
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.27
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.27
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.26
PRK06370	463	mercuric reductase; Validated	99.26
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.26
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.25
TIGR02053	463	MerA mercuric reductase. This model represents the	99.24
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.24
PLN02546	558	glutathione reductase	99.24
PRK12831	464	putative oxidoreductase; Provisional	99.24
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.23
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.23
PRK13748	561	putative mercuric reductase; Provisional	99.22
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.22
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.21
PTZ00058	561	glutathione reductase; Provisional	99.21
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.21
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.2
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.2
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.19
PRK14727	479	putative mercuric reductase; Provisional	99.17
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.17
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.17
PRK14694	468	putative mercuric reductase; Provisional	99.16
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.16
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.14
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.12
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.12
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.1
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.08
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.08
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.06
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.0
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.0
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.97
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.96
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.93
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.92
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.9
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.88
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.87
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.87
PRK13984	604	putative oxidoreductase; Provisional	98.85
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.79
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.69
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	98.68
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	98.65
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.64
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.63
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.49
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.48
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.47
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.26
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.22
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.21
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.19
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	98.15
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.14
PLN02852	491	ferredoxin-NADP+ reductase	98.06
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.06
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.05
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.04
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.92
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.92
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.9
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.87
PRK06116	450	glutathione reductase; Validated	97.84
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.8
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.8
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.78
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.76
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.75
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.75
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.75
PRK10262	321	thioredoxin reductase; Provisional	97.73
COG2081	408	Predicted flavoproteins [General function predicti	97.67
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.66
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.66
PRK14694	468	putative mercuric reductase; Provisional	97.61
PRK06370	463	mercuric reductase; Validated	97.61
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.58
PTZ00058	561	glutathione reductase; Provisional	97.56
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.54
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.54
PLN02463	447	lycopene beta cyclase	97.54
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.54
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	97.54
PRK06753	373	hypothetical protein; Provisional	97.53
PRK06847	375	hypothetical protein; Provisional	97.51
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.5
PRK07236	386	hypothetical protein; Provisional	97.46
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	97.46
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.45
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.43
TIGR02053	463	MerA mercuric reductase. This model represents the	97.42
PLN02852	491	ferredoxin-NADP+ reductase	97.41
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.4
PLN02546	558	glutathione reductase	97.37
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.36
PRK07588	391	hypothetical protein; Provisional	97.33
PRK05868	372	hypothetical protein; Validated	97.29
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.29
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.28
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.28
PLN02507	499	glutathione reductase	97.26
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.24
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.2
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.19
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	97.18
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.14
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.08
PTZ00052	499	thioredoxin reductase; Provisional	97.08
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.08
PRK13748	561	putative mercuric reductase; Provisional	97.07
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.07
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.05
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.05
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.04
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.04
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.02
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.02
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.02
PRK14727	479	putative mercuric reductase; Provisional	97.01
PRK07846	451	mycothione reductase; Reviewed	96.95
PRK06567	1028	putative bifunctional glutamate synthase subunit b	96.88
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.85
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	96.84
PLN02697	529	lycopene epsilon cyclase	96.83
PRK06567	1028	putative bifunctional glutamate synthase subunit b	96.82
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.76
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	96.66
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.65
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.51
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	96.51
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.43
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.38
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	96.37
KOG2755	334	consensus Oxidoreductase [General function predict	96.36
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	96.35
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	96.33
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	96.31
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	96.19
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.16
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.15
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.04
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	96.0
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	95.93
PRK07233	434	hypothetical protein; Provisional	95.92
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.91
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	95.88
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.83
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	95.81
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	95.8
PRK09126	392	hypothetical protein; Provisional	95.76
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	95.75
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	95.74
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	95.72
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	95.71
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	95.69
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	95.68
PRK08244	493	hypothetical protein; Provisional	95.67
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	95.66
PRK06184	502	hypothetical protein; Provisional	95.65
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	95.63
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	95.63
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.61
PRK07045	388	putative monooxygenase; Reviewed	95.61
PRK08013	400	oxidoreductase; Provisional	95.57
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	95.55
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	95.55
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	95.53
PRK11728	393	hydroxyglutarate oxidase; Provisional	95.49
PRK12770	352	putative glutamate synthase subunit beta; Provisio	95.48
PRK08163	396	salicylate hydroxylase; Provisional	95.48
PRK10157	428	putative oxidoreductase FixC; Provisional	95.44
PTZ00188	506	adrenodoxin reductase; Provisional	95.42
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	95.41
PRK10015	429	oxidoreductase; Provisional	95.41
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	95.39
PRK06185	407	hypothetical protein; Provisional	95.39
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.38
PRK06126	545	hypothetical protein; Provisional	95.37
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	95.35
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	95.34
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	95.31
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	95.31
PRK06475	400	salicylate hydroxylase; Provisional	95.27
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	95.26
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	95.25
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.24
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	95.23
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	95.22
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	95.21
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	95.19
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.18
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	95.18
PRK11445	351	putative oxidoreductase; Provisional	95.18
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.14
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.12
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	95.11
PRK11883	451	protoporphyrinogen oxidase; Reviewed	95.1
PRK12831	464	putative oxidoreductase; Provisional	95.1
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	95.1
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	95.08
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	95.08
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	95.05
PRK06834	488	hypothetical protein; Provisional	95.02
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.0
PRK07190	487	hypothetical protein; Provisional	95.0
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	94.99
PRK08132	547	FAD-dependent oxidoreductase; Provisional	94.98
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	94.94
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	94.93
PRK07538	413	hypothetical protein; Provisional	94.89
PLN02268	435	probable polyamine oxidase	94.88
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	94.87
PRK07208	479	hypothetical protein; Provisional	94.86
PLN02464	627	glycerol-3-phosphate dehydrogenase	94.86
PRK08294	634	phenol 2-monooxygenase; Provisional	94.84
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.76
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	94.68
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	94.67
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.59
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	94.55
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	94.54
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	94.52
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.5
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	94.47
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	94.46
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	94.45
PLN02985	514	squalene monooxygenase	94.45
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	94.44
PRK12814	652	putative NADPH-dependent glutamate synthase small	94.4
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	94.39
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.38
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	94.36
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	94.33
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	94.32
PRK08274	466	tricarballylate dehydrogenase; Validated	94.31
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	94.29
PRK06996	398	hypothetical protein; Provisional	94.26
PLN02576	496	protoporphyrinogen oxidase	94.25
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.16
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	94.15
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	94.02
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	93.92
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	93.91
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	93.91
PTZ00188	506	adrenodoxin reductase; Provisional	93.85
PRK07121	492	hypothetical protein; Validated	93.81
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.78
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	93.73
PRK12416	463	protoporphyrinogen oxidase; Provisional	93.63
COG3349	485	Uncharacterized conserved protein [Function unknow	93.62
PRK09897	534	hypothetical protein; Provisional	93.58
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	93.47
PTZ00367	567	squalene epoxidase; Provisional	93.4
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	93.27
PRK08401	466	L-aspartate oxidase; Provisional	93.26
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	93.25
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	93.23
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	93.14
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.11
PTZ00383	497	malate:quinone oxidoreductase; Provisional	93.09
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	93.08
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	93.01
PRK05257	494	malate:quinone oxidoreductase; Validated	92.94
PLN02661	357	Putative thiazole synthesis	92.86
PRK12842	574	putative succinate dehydrogenase; Reviewed	92.85
COG0579	429	Predicted dehydrogenase [General function predicti	92.75
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	92.64
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	92.63
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	92.6
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	92.53
PLN02529	738	lysine-specific histone demethylase 1	92.51
PRK13339	497	malate:quinone oxidoreductase; Reviewed	92.38
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	92.34
PLN02676	487	polyamine oxidase	92.31
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	92.27
PLN02568	539	polyamine oxidase	92.26
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	92.26
PLN02487	569	zeta-carotene desaturase	92.21
PRK02106	560	choline dehydrogenase; Validated	92.14
PRK07804	541	L-aspartate oxidase; Provisional	92.07
PRK05562	223	precorrin-2 dehydrogenase; Provisional	92.01
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	91.99
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	91.91
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	91.9
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	91.84
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	91.84
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	91.84
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	91.71
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	91.7
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	91.66
PLN02328	808	lysine-specific histone demethylase 1 homolog	91.65
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	91.64
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	91.58
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	91.52
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	91.5
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	91.45
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	91.36
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	91.36
TIGR00275	400	flavoprotein, HI0933 family. The model when search	91.32
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	91.3
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	91.18
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	91.17
PRK04148	134	hypothetical protein; Provisional	90.99
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	90.93
PRK08275	554	putative oxidoreductase; Provisional	90.93
PLN02612	567	phytoene desaturase	90.9
PLN03000	881	amine oxidase	90.88
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	90.79
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	90.73
PRK13984	604	putative oxidoreductase; Provisional	90.69
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	90.68
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	90.65
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	90.63
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	90.61
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.61
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	90.41
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.38
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	90.38
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	90.32
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	90.25
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	90.24
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	90.22
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.97
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.9
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	89.89
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	89.8
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	89.71
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	89.63
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	89.61
PLN02815	594	L-aspartate oxidase	89.59
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	89.5
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	89.43
PRK07395	553	L-aspartate oxidase; Provisional	89.38
PRK09077	536	L-aspartate oxidase; Provisional	89.38
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.35
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	89.34
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	89.32
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.2
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	89.17
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	89.16
PLN02785	587	Protein HOTHEAD	89.1
PRK06175	433	L-aspartate oxidase; Provisional	89.01
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	88.96
PRK08071	510	L-aspartate oxidase; Provisional	88.83
PRK13977	576	myosin-cross-reactive antigen; Provisional	88.75
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.75
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	88.74
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	88.69
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	88.65
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	88.58
COG0569	225	TrkA K+ transport systems, NAD-binding component [	88.54
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	88.53
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	88.36
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	88.33
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	88.3
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	88.3
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	88.19
PRK15116	268	sulfur acceptor protein CsdL; Provisional	88.07
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	88.06
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	87.78
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	87.59
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	87.39
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	87.39
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	87.32
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	87.31
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	87.3
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	87.27
PRK12839	572	hypothetical protein; Provisional	87.24
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	87.1
COG2907	447	Predicted NAD/FAD-binding protein [General functio	87.05
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	86.96
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	86.94
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	86.91
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	86.85
PLN02976	1713	amine oxidase	86.58
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	86.55
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	86.51
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.37
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	86.25
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	86.12
PRK07512	513	L-aspartate oxidase; Provisional	86.07
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	85.94
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	85.94
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	85.72
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	85.41
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.37
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	85.33
COG3573	552	Predicted oxidoreductase [General function predict	85.31
PRK00536	262	speE spermidine synthase; Provisional	84.96
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	84.79
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	84.76
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	84.67
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	84.53
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	84.42
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	84.27
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	84.23
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	84.09
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	83.92
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	83.78
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	83.67
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	83.61
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	83.55
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	83.52
PRK09496	453	trkA potassium transporter peripheral membrane com	83.46
PRK07417	279	arogenate dehydrogenase; Reviewed	83.46
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	83.4
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	83.39
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	83.31
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	83.17
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	83.13
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	83.13
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	83.03
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	83.0
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	82.96
PRK08306	296	dipicolinate synthase subunit A; Reviewed	82.92
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	82.71
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	82.25
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	81.92
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	81.8
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	81.68
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	81.66
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	81.65
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	81.58
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	81.51
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	81.49
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	81.48
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	81.24
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	81.17
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	80.97
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	80.93
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	80.78
PRK11730	715	fadB multifunctional fatty acid oxidation complex	80.53
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	80.47
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	80.31
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	80.22
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	80.13
PRK10637	457	cysG siroheme synthase; Provisional	80.06

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=100.00  E-value=2.5e-38  Score=270.70  Aligned_cols=182  Identities=60%  Similarity=1.062  Sum_probs=157.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCC-CCCCeEEcceeEEeeCCCeEEEcCCcEEecCEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQP-GFDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTG   79 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~-~~~~i~~~~~v~~~~~~~~v~~~dg~~~~~D~vi~atG   79 (182)
                      +|+|||+|+||+|+|.+|++.+++|++++|+........++ ...++..++.|.++.++++|+|.||+.+++|.||+|||
T Consensus       206 ~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~~~~~~~~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TG  285 (461)
T PLN02172        206 VVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTG  285 (461)
T ss_pred             EEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccccccCcCCCCceEECCcccceecCCeEEECCCCCccCCEEEECCc
Confidence            59999999999999999999999999999976543222222 12356667777776665679999999999999999999


Q ss_pred             cccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCCcccccHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 037525           80 YKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTK  159 (182)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~ia~~l~g~~~lP~~~~m~~~~~  159 (182)
                      |+++++||+..+.+.++++++.+||+++|++...|+|+|+|.+..+++|+++|+||+|+|++|+|+.+||++++|.++++
T Consensus       286 y~~~~pfL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~~~E~Qa~~~a~v~sG~~~LPs~~~m~~~~~  365 (461)
T PLN02172        286 YKYHFPFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDIN  365 (461)
T ss_pred             CCccccccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccCchhHHHHHHHHHHHHcCCCCCcCHHHHHHHHH
Confidence            99999999865556677888878999999997459999999998788999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCcceecCCCCC
Q 037525          160 AFYSTLEASGTPKRYTHNMGDYQ  182 (182)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~  182 (182)
                      ++++.+++.|.++||+|.|++.|
T Consensus       366 ~~~~~~~~~g~~~r~~h~~~~~~  388 (461)
T PLN02172        366 AWYASLEALGIPKRYTHKLGKIQ  388 (461)
T ss_pred             HHHHHHHhcCCCCceeEEcCccH
Confidence            99999888999999999998644

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=100.00  E-value=1.2e-32  Score=239.02  Aligned_cols=166  Identities=40%  Similarity=0.653  Sum_probs=114.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----------------------CCC-----------------
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----------------------KQP-----------------   41 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----------------------~~~-----------------   41 (182)
                      ||+|||+|+||+|+|.+|++.|++|+++.|++.|..++                      .+|                 
T Consensus       185 rVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~  264 (531)
T PF00743_consen  185 RVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFD  264 (531)
T ss_dssp             EEEEESSSHHHHHHHHHHTTTSCCEEEECC--------------------------------------------------
T ss_pred             EEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            69999999999999999999999999999987653210                      000                 


Q ss_pred             --------C-------------------CCCeEEcceeEEeeCCCeEEEcCCcEE-ecCEEEEecccccCCCCCCCCCce
Q 037525           42 --------G-------------------FDNMWLHSMIESAHDNGAVVFRNGHTV-HADVILHCTGYKYHFPFLETNGIV   93 (182)
Q Consensus        42 --------~-------------------~~~i~~~~~v~~~~~~~~v~~~dg~~~-~~D~vi~atG~~~~~~~l~~~~~~   93 (182)
                              .                   .++|..++.|+++++ ++|+|.||+++ ++|.||+||||+.++|||++. .+
T Consensus       265 ~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~-~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~-~~  342 (531)
T PF00743_consen  265 HENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTE-NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDES-LI  342 (531)
T ss_dssp             ----------------------------------EE-EEEE-S-SEEEETTSEEEEE-SEEEE---EE---TTB-TT-TT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc-cc
Confidence                    0                   013455677888877 59999999986 699999999999999999874 34


Q ss_pred             ecCCCccccccccccCCCC-CCCEEEEeccCC-cccccHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 037525           94 TMDDNRVGPLYKHVFPPVL-APWLSFVGLPWK-VIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASG  169 (182)
Q Consensus        94 ~~~~~~~~~ly~~~~~~~~-~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~~~lP~~~~m~~~~~~~~~~~~~~~  169 (182)
                      ...++.+ +||+++|+++. .|+|+|+|.... ++.++++|+||+|+|++|+|+.+||++++|.++++++.+++.+++
T Consensus       343 ~~~~~~~-~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~a~v~sG~~~LPs~~~M~~~i~~~~~~~~~~~  419 (531)
T PF00743_consen  343 KVDDNRV-RLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWAARVFSGRVKLPSKEEMMEEIEEEQEWRAKRF  419 (531)
T ss_dssp             -S-SSSS-SEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHHHHHHTTSS----HHHHHHHHHHHHHHHHT--
T ss_pred             ccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5555555 79999999863 499999999864 567899999999999999999999999999999998888877664

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.92  E-value=8.1e-25  Score=185.80  Aligned_cols=178  Identities=47%  Similarity=0.771  Sum_probs=142.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCC-CCCeEEcceeEEeeCCCeEEEcCCcEEecCEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPG-FDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTG   79 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~-~~~i~~~~~v~~~~~~~~v~~~dg~~~~~D~vi~atG   79 (182)
                      +|+|||+|+||+|+|.+++..|++|+++.+ .........+. ..+++..+.|..+++++.+.+.++....+|.||+|||
T Consensus       188 ~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~~~~~~~~~~~D~ii~ctg  266 (448)
T KOG1399|consen  188 VVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHVEPPEILGENLWQVPSIKSFTEDGSVFEKGGPVERVDRIIFCTG  266 (448)
T ss_pred             eEEEECCCccHHHHHHHHHHhccCcceeee-cccccccccceeecceEEccccccccCcceEEEcCceeEEeeeEEEeee
Confidence            599999999999999999999999999976 20000000110 1355555558888776445555666678999999999


Q ss_pred             cccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCCcccccHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 037525           80 YKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTK  159 (182)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~ia~~l~g~~~lP~~~~m~~~~~  159 (182)
                      |...+||++........++...++|+++|++.+.|++.++|.+...+.++.+|.|++|+++++.|+.+||+.++|..+..
T Consensus       267 y~y~fPfl~~~~~~~~~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~~lps~~~m~~d~~  346 (448)
T KOG1399|consen  267 YKYKFPFLETLGLGTVRDNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRLKLPSKDQMLEDGQ  346 (448)
T ss_pred             eEeecceeccCCceeeccCcccchheeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCCCcCCCHHHhhhhhh
Confidence            99999999875443445555558999999988778999999887668899999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCC-CcceecCC
Q 037525          160 AFYSTLEASGTP-KRYTHNMG  179 (182)
Q Consensus       160 ~~~~~~~~~~~~-~~~~~~~~  179 (182)
                      +.++.+...+.+ +|+.|.++
T Consensus       347 ~~~~~~~~~~~~~~~~t~~~~  367 (448)
T KOG1399|consen  347 EKYEKLDAVGLATGRHTHVPD  367 (448)
T ss_pred             hhhhhhhhhcccccccccccc
Confidence            888888888887 88888865

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.59  E-value=7e-15  Score=123.40  Aligned_cols=141  Identities=18%  Similarity=0.244  Sum_probs=99.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-------------eEEEEeccCCCCC-CC-C--------CCCC-CCeEEcceeEEee
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-------------EVHLVSRSVADGT-YE-K--------QPGF-DNMWLHSMIESAH   56 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-------------~V~l~~r~~~~~~-~~-~--------~~~~-~~i~~~~~v~~~~   56 (182)
                      +|+|||||++|+|+|.+|++...             +|+|+++.+.... +. .        +.+. -++.++..|++++
T Consensus       157 ti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~  236 (405)
T COG1252         157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVT  236 (405)
T ss_pred             EEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEEC
Confidence            48999999999999999998543             7889888775421 10 0        1111 1456678899998


Q ss_pred             CCCeEEEcCCcE-EecCEEEEecccccCCCCCCCCCceecC-CCccccccccccCCCCCCCEEEEeccCC-------ccc
Q 037525           57 DNGAVVFRNGHT-VHADVILHCTGYKYHFPFLETNGIVTMD-DNRVGPLYKHVFPPVLAPWLSFVGLPWK-------VIP  127 (182)
Q Consensus        57 ~~~~v~~~dg~~-~~~D~vi~atG~~~~~~~l~~~~~~~~~-~~~~~~ly~~~~~~~~~p~l~~iG~~~~-------~~~  127 (182)
                      ++ +|++.+|.. +++|.+|||+|.+++ +++.....++.+ .+++ -.-...-.++ +|++|.+|++..       +++
T Consensus       237 ~~-~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl-~V~~~L~~~~-~~~IFa~GD~A~~~~~~p~P~t  312 (405)
T COG1252         237 PD-GVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRL-VVNPTLQVPG-HPDIFAAGDCAAVIDPRPVPPT  312 (405)
T ss_pred             CC-cEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCE-EeCCCcccCC-CCCeEEEeccccCCCCCCCCCh
Confidence            74 899999885 999999999999987 555541112322 2343 2233344456 799999999862       245


Q ss_pred             ccHHHHHHHHHHHHHcCC
Q 037525          128 FPLCEYQSKWIAGVLSGQ  145 (182)
Q Consensus       128 ~~~~e~qa~~ia~~l~g~  145 (182)
                      .+.+..|++++|+.|...
T Consensus       313 AQ~A~Qqg~~~a~ni~~~  330 (405)
T COG1252         313 AQAAHQQGEYAAKNIKAR  330 (405)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            678899999999988644

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.50  E-value=4.9e-13  Score=113.89  Aligned_cols=139  Identities=14%  Similarity=0.237  Sum_probs=96.0

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--------------CCeEEEEeccCCCC-CCC---------CCCCC-CCeEEcceeEEe
Q 037525            1 VIILVGSSASAVDICRDLAGV--------------AKEVHLVSRSVADG-TYE---------KQPGF-DNMWLHSMIESA   55 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--------------a~~V~l~~r~~~~~-~~~---------~~~~~-~~i~~~~~v~~~   55 (182)
                      +|+|||+|++|+|+|.+|++.              ..+|+++++++... .++         .+... -++..+..|+++
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v  254 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEV  254 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEE
Confidence            489999999999999999863              46899999876431 110         01111 134456778888


Q ss_pred             eCCCeEEEcCCcEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCC------cccc
Q 037525           56 HDNGAVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK------VIPF  128 (182)
Q Consensus        56 ~~~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~------~~~~  128 (182)
                      .++ .++++||+++++|.+|||+|.+++ +++... .++.++ +.+ .....+-.++ .|++|.+|++..      ....
T Consensus       255 ~~~-~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~-~l~~~~~G~I-~Vd~~l~~~~-~~~IfAiGD~a~~~~~~~~~~~  329 (424)
T PTZ00318        255 LDK-EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQL-KVDKTSRGRI-SVDDHLRVKP-IPNVFALGDCAANEERPLPTLA  329 (424)
T ss_pred             eCC-EEEECCCCEEEccEEEEccCCCCc-chhhhc-CCcccCCCcE-EeCCCcccCC-CCCEEEEeccccCCCCCCCCch
Confidence            764 799999999999999999999987 565442 233332 333 2333333345 699999999874      1245


Q ss_pred             cHHHHHHHHHHHHHcC
Q 037525          129 PLCEYQSKWIAGVLSG  144 (182)
Q Consensus       129 ~~~e~qa~~ia~~l~g  144 (182)
                      +.+..|++++|..|.+
T Consensus       330 ~~A~~qg~~~A~ni~~  345 (424)
T PTZ00318        330 QVASQQGVYLAKEFNN  345 (424)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6788999999888754

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.46  E-value=8.8e-13  Score=112.75  Aligned_cols=140  Identities=17%  Similarity=0.233  Sum_probs=99.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCCC-CeEEcceeEEeeCCCeEEEcCCcEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGFD-NMWLHSMIESAHDNGAVVFRNGHTV   69 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~~-~i~~~~~v~~~~~~~~v~~~dg~~~   69 (182)
                      +|+|||+|++|+|+|..|++.+++|+++++++.+.. ++         .+...+ ++..+..|+++.+ ..+++.+|+.+
T Consensus       150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~-~~v~~~~g~~~  228 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING-NEVTFKSGKVE  228 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC-CEEEECCCCEE
Confidence            589999999999999999999999999998764321 11         011111 2344577888865 47888889889


Q ss_pred             ecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-----------ccccHHHHHHHH
Q 037525           70 HADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-----------IPFPLCEYQSKW  137 (182)
Q Consensus        70 ~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~e~qa~~  137 (182)
                      ++|.|++|+|++|+.+++... ++.+++ +.+ .....+- ++ .|++|.+|++...           .....+..||+.
T Consensus       229 ~~D~vl~a~G~~pn~~~l~~~-gl~~~~~G~i-~Vd~~~~-t~-~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~  304 (438)
T PRK13512        229 HYDMIIEGVGTHPNSKFIESS-NIKLDDKGFI-PVNDKFE-TN-VPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASI  304 (438)
T ss_pred             EeCEEEECcCCCcChHHHHhc-CcccCCCCcE-EECCCcc-cC-CCCEEEeeeeEEeeeccCCCceecccchHHHHHHHH
Confidence            999999999999998887653 344433 223 2323322 34 6999999998531           123457789999


Q ss_pred             HHHHHcCC
Q 037525          138 IAGVLSGQ  145 (182)
Q Consensus       138 ia~~l~g~  145 (182)
                      ++..+.|.
T Consensus       305 ~a~ni~g~  312 (438)
T PRK13512        305 VAEQIAGN  312 (438)
T ss_pred             HHHHhcCC
Confidence            99999875

>PRK07846 mycothione reductase; Reviewed

Probab=99.45  E-value=2.7e-12  Score=110.15  Aligned_cols=142  Identities=18%  Similarity=0.152  Sum_probs=99.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCCC--------CCCC-CCeEEcceeEEeeCC-Ce--EEEcCCc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYEK--------QPGF-DNMWLHSMIESAHDN-GA--VVFRNGH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~~--------~~~~-~~i~~~~~v~~~~~~-~~--v~~~dg~   67 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++.|++... .++.        +... -++..+..++++..+ ++  +.+.+|+
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~  247 (451)
T PRK07846        168 SLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGS  247 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHhcCeEEEeCCEEEEEEEcCCEEEEEECCCc
Confidence            58999999999999999999999999999976542 1110        0011 123445677777532 23  5566788


Q ss_pred             EEecCEEEEecccccCCCCCCC-CCceecCCC-ccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHcC
Q 037525           68 TVHADVILHCTGYKYHFPFLET-NGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLSG  144 (182)
Q Consensus        68 ~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~g  144 (182)
                      .+++|.||+|+|.+|+.+++.. ...+++++. .+ ....++- ++ .|++|.+|+.... ...+.+..|++.++..+.+
T Consensus       248 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i-~Vd~~~~-Ts-~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~  324 (451)
T PRK07846        248 TVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRV-VVDEYQR-TS-AEGVFALGDVSSPYQLKHVANHEARVVQHNLLH  324 (451)
T ss_pred             EeecCEEEEEECCccCccccCchhcCceECCCCcE-eECCCcc-cC-CCCEEEEeecCCCccChhHHHHHHHHHHHHHcC
Confidence            8999999999999999988742 223444332 22 2222222 34 6999999998753 3457889999999999986


Q ss_pred             C
Q 037525          145 Q  145 (182)
Q Consensus       145 ~  145 (182)
                      .
T Consensus       325 ~  325 (451)
T PRK07846        325 P  325 (451)
T ss_pred             C
Confidence            4

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.43  E-value=3.6e-12  Score=109.35  Aligned_cols=142  Identities=18%  Similarity=0.159  Sum_probs=96.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCCC---------CCCC-CCeEEcceeEEeeCC--C--eEEEcC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYEK---------QPGF-DNMWLHSMIESAHDN--G--AVVFRN   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~~---------~~~~-~~i~~~~~v~~~~~~--~--~v~~~d   65 (182)
                      +|+|||+|++|+|+|..|++.+++|++++|++... .++.         +... -++..+..++++.++  +  .+.+.+
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~  247 (450)
T TIGR01421       168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFED  247 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECC
Confidence            58999999999999999999999999999876432 1110         1111 123344567777532  2  356677


Q ss_pred             C-cEEecCEEEEecccccCCCCCC-CCCceecCCCccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHHH
Q 037525           66 G-HTVHADVILHCTGYKYHFPFLE-TNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGVL  142 (182)
Q Consensus        66 g-~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l  142 (182)
                      | +.+++|.||+|+|++|+.+++. ....++.+........... .++ .|++|.+|++.. ....+.+..|++.++..+
T Consensus       248 g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~-~T~-~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i  325 (450)
T TIGR01421       248 GKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQ-NTN-VPGIYALGDVVGKVELTPVAIAAGRKLSERL  325 (450)
T ss_pred             CcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCC-cCC-CCCEEEEEecCCCcccHHHHHHHHHHHHHHH
Confidence            8 4689999999999999988653 2223444332211222222 234 699999999764 345678899999999999


Q ss_pred             cC
Q 037525          143 SG  144 (182)
Q Consensus       143 ~g  144 (182)
                      .|
T Consensus       326 ~~  327 (450)
T TIGR01421       326 FN  327 (450)
T ss_pred             hc
Confidence            85

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.42  E-value=1.5e-12  Score=109.11  Aligned_cols=140  Identities=16%  Similarity=0.210  Sum_probs=97.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCC------------CCC-CeEEcceeEEeeCCC---eEEEc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQP------------GFD-NMWLHSMIESAHDNG---AVVFR   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~------------~~~-~i~~~~~v~~~~~~~---~v~~~   64 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++++... ...++            ..+ ++.....|+++..++   .+.+.
T Consensus       143 ~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l-~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~  221 (377)
T PRK04965        143 RVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL-ASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLD  221 (377)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc-chhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEc
Confidence            58999999999999999999999999999876431 11011            111 233456777776432   36778


Q ss_pred             CCcEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCC--c---ccccHHHHHHHHHH
Q 037525           65 NGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK--V---IPFPLCEYQSKWIA  139 (182)
Q Consensus        65 dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~--~---~~~~~~e~qa~~ia  139 (182)
                      ||+++++|.||+|+|+.++..++.. .++..+.+-..+-+..   ++ .|++|.+|++..  +   +.+..+..|++.+|
T Consensus       222 ~g~~i~~D~vI~a~G~~p~~~l~~~-~gl~~~~gi~vd~~l~---ts-~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a  296 (377)
T PRK04965        222 SGRSIEVDAVIAAAGLRPNTALARR-AGLAVNRGIVVDSYLQ---TS-APDIYALGDCAEINGQVLPFLQPIQLSAMALA  296 (377)
T ss_pred             CCcEEECCEEEECcCCCcchHHHHH-CCCCcCCCEEECCCcc---cC-CCCEEEeeecEeECCceeehHHHHHHHHHHHH
Confidence            8989999999999999998776543 2333333211122222   24 699999999863  1   23556789999999


Q ss_pred             HHHcCCC
Q 037525          140 GVLSGQI  146 (182)
Q Consensus       140 ~~l~g~~  146 (182)
                      +.|.|..
T Consensus       297 ~n~~g~~  303 (377)
T PRK04965        297 KNLLGQN  303 (377)
T ss_pred             HHhcCCC
Confidence            9999863

>PLN02507 glutathione reductase

Probab=99.42  E-value=7.3e-12  Score=108.82  Aligned_cols=142  Identities=19%  Similarity=0.190  Sum_probs=98.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC-CCCC---------CCCCC-CCeEEcceeEEeeC-CCe--EEEcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD-GTYE---------KQPGF-DNMWLHSMIESAHD-NGA--VVFRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~-~~~~---------~~~~~-~~i~~~~~v~~~~~-~~~--v~~~dg   66 (182)
                      +|+|||+|++|+|+|..+++.+++|++++|++.. ..++         .+... -++..+..|+++.+ +++  +.+.+|
T Consensus       205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g  284 (499)
T PLN02507        205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHG  284 (499)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCC
Confidence            5899999999999999999999999999987643 1111         01111 13344567777753 223  455678


Q ss_pred             cEEecCEEEEecccccCCCCCC-CCCceecCCC-ccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHc
Q 037525           67 HTVHADVILHCTGYKYHFPFLE-TNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus        67 ~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~  143 (182)
                      +++++|.|++|+|++|+.+++. ...++++++. .+ ....++- ++ .|++|.+|++... ...+.+..|++.++..+.
T Consensus       285 ~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I-~Vd~~~~-Ts-~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~  361 (499)
T PLN02507        285 EEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAV-KVDEYSR-TN-IPSIWAIGDVTNRINLTPVALMEGTCFAKTVF  361 (499)
T ss_pred             cEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcE-ecCCCCc-CC-CCCEEEeeEcCCCCccHHHHHHHHHHHHHHHc
Confidence            8899999999999999988753 1223444432 23 2222222 24 6999999998743 346788999999999997


Q ss_pred             CC
Q 037525          144 GQ  145 (182)
Q Consensus       144 g~  145 (182)
                      |.
T Consensus       362 g~  363 (499)
T PLN02507        362 GG  363 (499)
T ss_pred             CC
Confidence            64

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.40  E-value=1.6e-12  Score=110.59  Aligned_cols=141  Identities=16%  Similarity=0.212  Sum_probs=98.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC--CCC---------CCCCCC-CeEEcceeEEeeCCCe-EEEcCCc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG--TYE---------KQPGFD-NMWLHSMIESAHDNGA-VVFRNGH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~--~~~---------~~~~~~-~i~~~~~v~~~~~~~~-v~~~dg~   67 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++.+++...  .+.         .+...+ ++..+..|.++.+++. +++.+|+
T Consensus       139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~  218 (427)
T TIGR03385       139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGG  218 (427)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCC
Confidence            58999999999999999999999999999876541  111         011111 2334567788865433 3677888


Q ss_pred             EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCC-----------cccccHHHHHH
Q 037525           68 TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK-----------VIPFPLCEYQS  135 (182)
Q Consensus        68 ~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~-----------~~~~~~~e~qa  135 (182)
                      ++++|.||+|+|++++.+++... ++..++ +.+ ....++- ++ .|++|.+|++..           .+....+..|+
T Consensus       219 ~i~~D~vi~a~G~~p~~~~l~~~-gl~~~~~G~i-~vd~~~~-t~-~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g  294 (427)
T TIGR03385       219 VYQADMVILATGIKPNSELAKDS-GLKLGETGAI-WVNEKFQ-TS-VPNIYAAGDVAESHNIITKKPAWVPLAWGANKMG  294 (427)
T ss_pred             EEEeCEEEECCCccCCHHHHHhc-CcccCCCCCE-EECCCcE-eC-CCCEEEeeeeEEeeeccCCCceeeechHHHHHHH
Confidence            89999999999999998877542 333332 222 2222222 24 699999998863           12456889999


Q ss_pred             HHHHHHHcCC
Q 037525          136 KWIAGVLSGQ  145 (182)
Q Consensus       136 ~~ia~~l~g~  145 (182)
                      +.+|..|.|.
T Consensus       295 ~~~a~ni~g~  304 (427)
T TIGR03385       295 RIAGENIAGN  304 (427)
T ss_pred             HHHHHHhcCC
Confidence            9999999885

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.38  E-value=3.3e-12  Score=102.91  Aligned_cols=138  Identities=16%  Similarity=0.121  Sum_probs=93.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCCeE--EcceeEEeeCCC---eEEEc---CC--
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDNMW--LHSMIESAHDNG---AVVFR---NG--   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~i~--~~~~v~~~~~~~---~v~~~---dg--   66 (182)
                      +|+|||+|++|+|+|.+|++.+++|++++|++.+....    .+....++.  ....++++.+++   .+++.   +|  
T Consensus       143 ~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~  222 (300)
T TIGR01292       143 EVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEE  222 (300)
T ss_pred             EEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCce
Confidence            58999999999999999999999999999987543111    111111343  346677776533   24453   24  


Q ss_pred             cEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCC--cccccHHHHHHHHHHHHHc
Q 037525           67 HTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK--VIPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus        67 ~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~ia~~l~  143 (182)
                      .++++|.||+|||++++.+++...  +..+. +.+ ..... +..+ .|++|.+|++..  ......+..|++.+|..+.
T Consensus       223 ~~i~~D~vi~a~G~~~~~~~l~~~--~~~~~~g~i-~v~~~-~~t~-~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~  297 (300)
T TIGR01292       223 EELKVDGVFIAIGHEPNTELLKGL--LELDEGGYI-VTDEG-MRTS-VPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAE  297 (300)
T ss_pred             EEEEccEEEEeeCCCCChHHHHHh--heecCCCcE-EECCC-CccC-CCCEEEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence            357899999999999998777643  23222 222 23333 2335 699999999874  3346677888888887765

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR03452 mycothione_red mycothione reductase

Probab=99.38  E-value=1.5e-11  Score=105.55  Aligned_cols=143  Identities=16%  Similarity=0.135  Sum_probs=98.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCCC--------CCCC-CCeEEcceeEEeeCC-Ce--EEEcCCc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYEK--------QPGF-DNMWLHSMIESAHDN-GA--VVFRNGH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~~--------~~~~-~~i~~~~~v~~~~~~-~~--v~~~dg~   67 (182)
                      +|+|||+|++|+|+|..|++.+++|+++++.+.+. .++.        +... -++..+..|+++..+ ++  +.+.+|+
T Consensus       171 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~  250 (452)
T TIGR03452       171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGS  250 (452)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCC
Confidence            58999999999999999999999999999876531 1110        0011 123445667777532 23  4556788


Q ss_pred             EEecCEEEEecccccCCCCCCC-CCceecCCCccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHcCC
Q 037525           68 TVHADVILHCTGYKYHFPFLET-NGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLSGQ  145 (182)
Q Consensus        68 ~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~g~  145 (182)
                      ++++|.|++|+|.+|+.+++.. ..++++++........++- ++ .|++|.+|++... ...+.+..|++.++..+.|.
T Consensus       251 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~-Ts-~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~  328 (452)
T TIGR03452       251 TVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGR-TS-ARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP  328 (452)
T ss_pred             EEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcc-cC-CCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence            8999999999999999888643 2234543332112222322 34 6999999998753 34568899999999999864

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06116 glutathione reductase; Validated

Probab=99.37  E-value=1.7e-11  Score=105.14  Aligned_cols=143  Identities=17%  Similarity=0.192  Sum_probs=98.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCC---------CCCCC-CCeEEcceeEEeeC--CC--eEEEcC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYE---------KQPGF-DNMWLHSMIESAHD--NG--AVVFRN   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~---------~~~~~-~~i~~~~~v~~~~~--~~--~v~~~d   65 (182)
                      +|+|||+|++|+|+|..|++.+++|++++|++.+. ..+         .+... -++..+..|+++..  ++  .+.+.+
T Consensus       169 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~  248 (450)
T PRK06116        169 RVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLED  248 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcC
Confidence            58999999999999999999999999999876431 111         01111 12344567777753  22  356678


Q ss_pred             CcEEecCEEEEecccccCCCCCC-CCCceecCCCccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHHHc
Q 037525           66 GHTVHADVILHCTGYKYHFPFLE-TNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus        66 g~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l~  143 (182)
                      |+++++|.||+|+|++|+.+++. ...++..++........++- .+ .|++|.+|++.. ......+..|++.+|..+.
T Consensus       249 g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~-Ts-~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~  326 (450)
T PRK06116        249 GETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQN-TN-VPGIYAVGDVTGRVELTPVAIAAGRRLSERLF  326 (450)
T ss_pred             CcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCC-cC-CCCEEEEeecCCCcCcHHHHHHHHHHHHHHHh
Confidence            88899999999999999988643 11234443322112222222 24 699999999864 3446788999999999998


Q ss_pred             CC
Q 037525          144 GQ  145 (182)
Q Consensus       144 g~  145 (182)
                      |.
T Consensus       327 g~  328 (450)
T PRK06116        327 NN  328 (450)
T ss_pred             CC
Confidence            74

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=9.9e-12  Score=101.56  Aligned_cols=120  Identities=19%  Similarity=0.229  Sum_probs=85.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCCe--EEcceeEEeeCC--CeEEEcC--Cc--E
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDNM--WLHSMIESAHDN--GAVVFRN--GH--T   68 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~i--~~~~~v~~~~~~--~~v~~~d--g~--~   68 (182)
                      +|+|||||+||+|.|..|++.+++|++++|++.++...    .+...+++  ..+..|+++.++  .++++.+  |+  .
T Consensus       145 ~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~  224 (305)
T COG0492         145 DVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKE  224 (305)
T ss_pred             eEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEE
Confidence            58999999999999999999999999999999876421    12222234  456688888764  4788886  33  4


Q ss_pred             EecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCC
Q 037525           69 VHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK  124 (182)
Q Consensus        69 ~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~  124 (182)
                      +++|.+++++|+.|++.|+.... ...+++.+ ..-.. ..++ .|++|.+|+...
T Consensus       225 ~~~~gvf~~iG~~p~~~~~~~~~-~~~~~g~I-~v~~~-~~Ts-vpGifAaGDv~~  276 (305)
T COG0492         225 LPVDGVFIAIGHLPNTELLKGLG-VLDENGYI-VVDEE-METS-VPGIFAAGDVAD  276 (305)
T ss_pred             EEeceEEEecCCCCchHHHhhcc-ccCCCCcE-EcCCC-cccC-CCCEEEeEeecc
Confidence            68999999999999998876532 11122222 12222 3334 799999999863

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.35  E-value=2.9e-11  Score=104.75  Aligned_cols=142  Identities=15%  Similarity=0.158  Sum_probs=96.3

Q ss_pred             CEEEEcCCccHHHHHHHHhcc---CCeEEEEeccCCCC-CCC---------CCCCCC-CeEEcceeEEeeC--CC--eEE
Q 037525            1 VIILVGSSASAVDICRDLAGV---AKEVHLVSRSVADG-TYE---------KQPGFD-NMWLHSMIESAHD--NG--AVV   62 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~---a~~V~l~~r~~~~~-~~~---------~~~~~~-~i~~~~~v~~~~~--~~--~v~   62 (182)
                      +|+|||+|+.|+|+|..++..   +.+|+++++.+... .++         .+...+ ++..+..++++..  ++  .+.
T Consensus       189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~  268 (486)
T TIGR01423       189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVT  268 (486)
T ss_pred             eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEE
Confidence            589999999999999877654   78999999876532 111         011111 2344566777753  22  366


Q ss_pred             EcCCcEEecCEEEEecccccCCCCCCC-CCceecCCC-ccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHH
Q 037525           63 FRNGHTVHADVILHCTGYKYHFPFLET-NGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIA  139 (182)
Q Consensus        63 ~~dg~~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia  139 (182)
                      +.+|+++++|.||+|+|.+|+.+++.- ..++++++. .+ ....++- ++ .|++|.+|++... ...+.+..|++.++
T Consensus       269 ~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I-~Vd~~l~-Ts-~~~IyA~GDv~~~~~l~~~A~~qG~~aa  345 (486)
T TIGR01423       269 FESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAI-QVDEFSR-TN-VPNIYAIGDVTDRVMLTPVAINEGAAFV  345 (486)
T ss_pred             EcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCE-ecCCCCc-CC-CCCEEEeeecCCCcccHHHHHHHHHHHH
Confidence            678888999999999999999886542 123444332 22 2222222 24 6999999998753 45678899999999


Q ss_pred             HHHcCC
Q 037525          140 GVLSGQ  145 (182)
Q Consensus       140 ~~l~g~  145 (182)
                      ..+.|.
T Consensus       346 ~ni~g~  351 (486)
T TIGR01423       346 DTVFGN  351 (486)
T ss_pred             HHHhCC
Confidence            999874

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.35  E-value=7e-12  Score=114.15  Aligned_cols=141  Identities=12%  Similarity=0.097  Sum_probs=98.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC--CCC---------CCCCC-CeEEcceeEEeeCCC---eEEEcC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT--YEK---------QPGFD-NMWLHSMIESAHDNG---AVVFRN   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~--~~~---------~~~~~-~i~~~~~v~~~~~~~---~v~~~d   65 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++.+.+..  .+.         +...+ ++..+..++++.+++   +|++.|
T Consensus       142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~d  221 (785)
T TIGR02374       142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKD  221 (785)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECC
Confidence            589999999999999999999999999998765411  100         11111 244456677775432   578899


Q ss_pred             CcEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCC--c---ccccHHHHHHHHHHH
Q 037525           66 GHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK--V---IPFPLCEYQSKWIAG  140 (182)
Q Consensus        66 g~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~--~---~~~~~~e~qa~~ia~  140 (182)
                      |+++++|.||+|+|++|+.+++.. .++..+++-+.+.|..   ++ .|++|.+|++..  .   ..+..+..||+.+|.
T Consensus       222 G~~i~~D~Vi~a~G~~Pn~~la~~-~gl~~~ggI~Vd~~~~---Ts-~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~  296 (785)
T TIGR02374       222 GSSLEADLIVMAAGIRPNDELAVS-AGIKVNRGIIVNDSMQ---TS-DPDIYAVGECAEHNGRVYGLVAPLYEQAKVLAD  296 (785)
T ss_pred             CCEEEcCEEEECCCCCcCcHHHHh-cCCccCCCEEECCCcc---cC-CCCEEEeeecceeCCcccccHHHHHHHHHHHHH
Confidence            999999999999999999876543 2344442222223333   24 699999999863  1   124457799999999


Q ss_pred             HHcCCC
Q 037525          141 VLSGQI  146 (182)
Q Consensus       141 ~l~g~~  146 (182)
                      .|.|..
T Consensus       297 ni~g~~  302 (785)
T TIGR02374       297 HICGVE  302 (785)
T ss_pred             HhcCCC
Confidence            999865

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.34  E-value=2.9e-11  Score=103.88  Aligned_cols=143  Identities=14%  Similarity=0.112  Sum_probs=97.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCC-CeE--EEcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDN-GAV--VFRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~-~~v--~~~dg   66 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|.+.+.. .+         .+... -++..+..|+++.++ +++  .+.+|
T Consensus       174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~g  253 (462)
T PRK06416        174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDG  253 (462)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeC
Confidence            589999999999999999999999999998765321 10         01111 134445677777642 233  44555


Q ss_pred             ---cEEecCEEEEecccccCCCCCC-CCCceecCCCccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHH
Q 037525           67 ---HTVHADVILHCTGYKYHFPFLE-TNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGV  141 (182)
Q Consensus        67 ---~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~  141 (182)
                         +++++|.||+|+|.+|+.+++. ...++..+.+.+ ....++- ++ .|++|.+|++.. ......+..|++.+|..
T Consensus       254 g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i-~vd~~~~-t~-~~~VyAiGD~~~~~~~~~~A~~~g~~aa~n  330 (462)
T PRK06416        254 GKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFI-EVDEQLR-TN-VPNIYAIGDIVGGPMLAHKASAEGIIAAEA  330 (462)
T ss_pred             CeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEE-eECCCCc-cC-CCCEEEeeecCCCcchHHHHHHHHHHHHHH
Confidence               5689999999999999988763 122344443323 2222222 34 699999999864 33467889999999999


Q ss_pred             HcCCC
Q 037525          142 LSGQI  146 (182)
Q Consensus       142 l~g~~  146 (182)
                      +.|..
T Consensus       331 i~~~~  335 (462)
T PRK06416        331 IAGNP  335 (462)
T ss_pred             HcCCC
Confidence            98753

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.34  E-value=2.1e-11  Score=105.98  Aligned_cols=142  Identities=18%  Similarity=0.087  Sum_probs=95.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC---------CCCCC-CeEEcceeEEeeCC-C--eEEEcCCc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---------QPGFD-NMWLHSMIESAHDN-G--AVVFRNGH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~---------~~~~~-~i~~~~~v~~~~~~-~--~v~~~dg~   67 (182)
                      +|+|||+|++|+|+|..|++.+++|+++.+...+..++.         +...+ ++..+..++++.+. +  .+.+.+|+
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~  263 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGT  263 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCC
Confidence            589999999999999999999999999987532221110         11111 23334455555421 1  46677888


Q ss_pred             EEecCEEEEecccccCCCCCCC-CCceecCCCccccccccccCCCCCCCEEEEeccCC--cccccHHHHHHHHHHHHHcC
Q 037525           68 TVHADVILHCTGYKYHFPFLET-NGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK--VIPFPLCEYQSKWIAGVLSG  144 (182)
Q Consensus        68 ~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~ia~~l~g  144 (182)
                      ++++|.||+|+|++|+.+++.. ..+++++.......-..  .++ .|++|.+|++..  ....+.+..|++.++..+.|
T Consensus       264 ~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts-~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g  340 (499)
T PTZ00052        264 TELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTN-IPNIFAVGDVVEGRPELTPVAIKAGILLARRLFK  340 (499)
T ss_pred             EEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCC-CCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhC
Confidence            8999999999999999888742 23344443221011111  234 699999999763  23567889999999999976


Q ss_pred             C
Q 037525          145 Q  145 (182)
Q Consensus       145 ~  145 (182)
                      .
T Consensus       341 ~  341 (499)
T PTZ00052        341 Q  341 (499)
T ss_pred             C
Confidence            4

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.34  E-value=3.8e-11  Score=103.47  Aligned_cols=142  Identities=17%  Similarity=0.107  Sum_probs=97.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCCC-CeEEcceeEEeeC-CCe--EEEcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGFD-NMWLHSMIESAHD-NGA--VVFRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~~-~i~~~~~v~~~~~-~~~--v~~~dg   66 (182)
                      +|+|||+|++|+|+|..|++.+++|+++++++.... .+         .+...+ ++.....++++.. +++  +.+.+|
T Consensus       179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g  258 (466)
T PRK07845        179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDG  258 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCC
Confidence            589999999999999999999999999998764321 11         011111 2334556777742 123  455688


Q ss_pred             cEEecCEEEEecccccCCCCCC-CCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHc
Q 037525           67 HTVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus        67 ~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~  143 (182)
                      +++++|.||+|+|++|+.+.+. ...+++++. +.+ ....++- .+ .|++|.+|+.... .....+..|++.++..+.
T Consensus       259 ~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i-~Vd~~~~-Ts-~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~  335 (466)
T PRK07845        259 RTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHI-TVDRVSR-TS-VPGIYAAGDCTGVLPLASVAAMQGRIAMYHAL  335 (466)
T ss_pred             cEEEecEEEEeecCCcCCCCCCchhhCceECCCCcE-eECCCcc-cC-CCCEEEEeeccCCccchhHHHHHHHHHHHHHc
Confidence            8899999999999999987642 112344433 223 2222222 24 6999999998743 446788999999999988


Q ss_pred             CC
Q 037525          144 GQ  145 (182)
Q Consensus       144 g~  145 (182)
                      |.
T Consensus       336 g~  337 (466)
T PRK07845        336 GE  337 (466)
T ss_pred             CC
Confidence            75

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.33  E-value=5.6e-11  Score=101.88  Aligned_cols=142  Identities=19%  Similarity=0.210  Sum_probs=97.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCC-C--eEEEcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDN-G--AVVFRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~-~--~v~~~dg   66 (182)
                      +|+|||+|.+|+|+|..+++.+.+|+++++++.... ++         .+... -++..+..+.++.++ +  .+.+.+|
T Consensus       168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g  247 (446)
T TIGR01424       168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHG  247 (446)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCC
Confidence            589999999999999999999999999998765311 10         01111 133445567777531 2  3556688


Q ss_pred             cEEecCEEEEecccccCCCCCC-CCCceecCCC-ccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHc
Q 037525           67 HTVHADVILHCTGYKYHFPFLE-TNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus        67 ~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~  143 (182)
                      +.+++|.||+|+|+.|+.+.+. ...+++.++. .+ ....++ .++ .|++|.+|++... ...+.+..|++.++..+.
T Consensus       248 ~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i-~vd~~~-~Ts-~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~  324 (446)
T TIGR01424       248 EEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAI-AVDEYS-RTS-IPSIYAVGDVTDRINLTPVAIMEATCFANTEF  324 (446)
T ss_pred             cEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcE-EeCCCC-ccC-CCCEEEeeccCCCccchhHHHHHHHHHHHHHh
Confidence            8899999999999999987642 1123444332 22 222222 224 6999999998743 345788999999999988


Q ss_pred             CC
Q 037525          144 GQ  145 (182)
Q Consensus       144 g~  145 (182)
                      |.
T Consensus       325 ~~  326 (446)
T TIGR01424       325 GN  326 (446)
T ss_pred             cC
Confidence            73

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.33  E-value=7.5e-12  Score=105.67  Aligned_cols=141  Identities=13%  Similarity=0.146  Sum_probs=97.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC--CCC-C--------CCCCC-CeEEcceeEEeeCCC--eEEEcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG--TYE-K--------QPGFD-NMWLHSMIESAHDNG--AVVFRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~--~~~-~--------~~~~~-~i~~~~~v~~~~~~~--~v~~~dg   66 (182)
                      +|+|||+|.+|+|+|..|++.+.+|+++++++.+.  ... .        +...+ ++..+..|+++.+++  .+.+.||
T Consensus       146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g  225 (396)
T PRK09754        146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSG  225 (396)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCC
Confidence            58999999999999999999999999999876531  110 0        00111 234456777776432  3567789


Q ss_pred             cEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCC-----c-----ccccHHHHHHH
Q 037525           67 HTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-----V-----IPFPLCEYQSK  136 (182)
Q Consensus        67 ~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-----~-----~~~~~~e~qa~  136 (182)
                      +++++|.||+|+|..++..++.. .++..++ .+ ....++- ++ .|++|.+|++..     +     ..++.+..|++
T Consensus       226 ~~i~aD~Vv~a~G~~pn~~l~~~-~gl~~~~-gi-~vd~~~~-ts-~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~  300 (396)
T PRK09754        226 ETLQADVVIYGIGISANDQLARE-ANLDTAN-GI-VIDEACR-TC-DPAIFAGGDVAITRLDNGALHRCESWENANNQAQ  300 (396)
T ss_pred             CEEECCEEEECCCCChhhHHHHh-cCCCcCC-CE-EECCCCc-cC-CCCEEEccceEeeeCCCCCEEEECcHHHHHHHHH
Confidence            88999999999999998766543 2333332 22 2222222 24 699999999752     1     13578999999


Q ss_pred             HHHHHHcCCC
Q 037525          137 WIAGVLSGQI  146 (182)
Q Consensus       137 ~ia~~l~g~~  146 (182)
                      .+|..+.|..
T Consensus       301 ~aa~ni~g~~  310 (396)
T PRK09754        301 IAAAAMLGLP  310 (396)
T ss_pred             HHHHHhcCCC
Confidence            9999998863

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.33  E-value=4.7e-11  Score=102.56  Aligned_cols=142  Identities=15%  Similarity=0.152  Sum_probs=96.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeC-CCe--EEEcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHD-NGA--VVFRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~-~~~--v~~~dg   66 (182)
                      +|+|||+|++|+|+|..+++.+.+|+++++++.+.. ++         .+... -++.....++++.. +++  +++.+|
T Consensus       177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g  256 (461)
T PRK05249        177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSG  256 (461)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCC
Confidence            589999999999999999999999999998765321 11         01111 12334566777752 223  455678


Q ss_pred             cEEecCEEEEecccccCCCCCC-CCCceecCCC-ccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHHHc
Q 037525           67 HTVHADVILHCTGYKYHFPFLE-TNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus        67 ~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l~  143 (182)
                      +++++|.||+|+|.+|+.+.+. ...++..++. .+ ..-.++- .+ .|++|.+|+... ......+..|++.+|..+.
T Consensus       257 ~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i-~vd~~~~-t~-~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~  333 (461)
T PRK05249        257 KKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQL-KVNENYQ-TA-VPHIYAVGDVIGFPSLASASMDQGRIAAQHAV  333 (461)
T ss_pred             CEEEeCEEEEeecCCccccCCCchhhCcEecCCCcE-eeCCCcc-cC-CCCEEEeeecCCCcccHhHHHHHHHHHHHHHc
Confidence            8899999999999999987642 1123344322 22 2222222 24 699999999864 3345688999999999998


Q ss_pred             CC
Q 037525          144 GQ  145 (182)
Q Consensus       144 g~  145 (182)
                      |.
T Consensus       334 g~  335 (461)
T PRK05249        334 GE  335 (461)
T ss_pred             CC
Confidence            76

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.32  E-value=6e-11  Score=102.20  Aligned_cols=143  Identities=17%  Similarity=0.202  Sum_probs=96.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCCC-e--EEEc--
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDNG-A--VVFR--   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~~-~--v~~~--   64 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++.+.+.... .+         .+... -++..+..|+++.+++ .  +.+.  
T Consensus       174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~  253 (466)
T PRK07818        174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKK  253 (466)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEec
Confidence            589999999999999999999999999998764311 10         01111 1344456777876432 2  4454  


Q ss_pred             CCc--EEecCEEEEecccccCCCCCC-CCCceecCCC-ccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHH
Q 037525           65 NGH--TVHADVILHCTGYKYHFPFLE-TNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIA  139 (182)
Q Consensus        65 dg~--~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia  139 (182)
                      ||+  ++++|.||+|+|++|+.+.+. ...++.+++. .+ ....++- .+ .|++|.+|++.. ......+..|++.+|
T Consensus       254 ~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i-~vd~~~~-Ts-~p~IyAiGD~~~~~~l~~~A~~~g~~aa  330 (466)
T PRK07818        254 DGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAI-AIDDYMR-TN-VPHIYAIGDVTAKLQLAHVAEAQGVVAA  330 (466)
T ss_pred             CCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcE-eeCCCcc-cC-CCCEEEEeecCCCcccHhHHHHHHHHHH
Confidence            664  579999999999999987642 1123343322 23 2222222 24 699999999864 345678999999999


Q ss_pred             HHHcCCC
Q 037525          140 GVLSGQI  146 (182)
Q Consensus       140 ~~l~g~~  146 (182)
                      ..+.|..
T Consensus       331 ~~i~g~~  337 (466)
T PRK07818        331 ETIAGAE  337 (466)
T ss_pred             HHHcCCC
Confidence            9998753

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.30  E-value=6.8e-11  Score=102.41  Aligned_cols=141  Identities=17%  Similarity=0.186  Sum_probs=93.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC---------CCCCCC-CeEEcceeEEeeC-CC--eEEEcCCc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE---------KQPGFD-NMWLHSMIESAHD-NG--AVVFRNGH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~---------~~~~~~-~i~~~~~v~~~~~-~~--~v~~~dg~   67 (182)
                      +|+|||+|++|+|+|..|++.+++|+++.|......++         .+...+ ++..+..++++.+ ++  .+++.+|+
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~  261 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDST  261 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCC
Confidence            58999999999999999999999999998742221111         011111 2333445555542 12  35566653


Q ss_pred             ---EEecCEEEEecccccCCCCCCC-CCceecCC--Ccc-ccccccccCCCCCCCEEEEeccCC--cccccHHHHHHHHH
Q 037525           68 ---TVHADVILHCTGYKYHFPFLET-NGIVTMDD--NRV-GPLYKHVFPPVLAPWLSFVGLPWK--VIPFPLCEYQSKWI  138 (182)
Q Consensus        68 ---~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~--~~~-~~ly~~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~i  138 (182)
                         ++++|.||+|+|..|+.+++.. ..++++++  +.+ ..-|..   .+ .|++|.+|++..  ....+.+..|++.+
T Consensus       262 ~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~---Ts-~p~IyA~GDv~~~~~~l~~~A~~~g~~a  337 (484)
T TIGR01438       262 NGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQ---TN-VPYIYAVGDILEDKQELTPVAIQAGRLL  337 (484)
T ss_pred             cceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcc---cC-CCCEEEEEEecCCCccchHHHHHHHHHH
Confidence               6899999999999999887542 22344432  222 122222   34 699999999763  33467889999999


Q ss_pred             HHHHcCC
Q 037525          139 AGVLSGQ  145 (182)
Q Consensus       139 a~~l~g~  145 (182)
                      +..+.+.
T Consensus       338 a~~i~~~  344 (484)
T TIGR01438       338 AQRLFSG  344 (484)
T ss_pred             HHHHhcC
Confidence            9999863

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK10262 thioredoxin reductase; Provisional

Probab=99.29  E-value=7.6e-11  Score=96.74  Aligned_cols=139  Identities=16%  Similarity=0.185  Sum_probs=90.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCC--------CCCCCCCCeE--EcceeEEeeCCC----eEEEcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTY--------EKQPGFDNMW--LHSMIESAHDNG----AVVFRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~--------~~~~~~~~i~--~~~~v~~~~~~~----~v~~~dg   66 (182)
                      +|+|||+|++|+|+|..|++.+++|++++|++.+...        +.+.. .+|.  .+..++++.+++    +|++.++
T Consensus       148 ~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~~~~~l~~-~gV~i~~~~~v~~v~~~~~~~~~v~~~~~  226 (321)
T PRK10262        148 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVEN-GNIILHTNRTLEEVTGDQMGVTGVRLRDT  226 (321)
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHHHHhhccC-CCeEEEeCCEEEEEEcCCccEEEEEEEEc
Confidence            5899999999999999999999999999998754211        11111 2333  456777886542    4666543


Q ss_pred             ------cEEecCEEEEecccccCCCCCCCCCceecCCCcccccccc----ccCCCCCCCEEEEeccCCcc------cccH
Q 037525           67 ------HTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKH----VFPPVLAPWLSFVGLPWKVI------PFPL  130 (182)
Q Consensus        67 ------~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~----~~~~~~~p~l~~iG~~~~~~------~~~~  130 (182)
                            +++++|.||+++|++|+..++...  +..+++.+ ..-.+    ...++ .|++|.+|++....      .+..
T Consensus       227 ~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~--l~~~~g~i-~vd~~~~~~~~~t~-~~~VyA~GD~~~~~~~~~~~A~~~  302 (321)
T PRK10262        227 QNSDNIESLDVAGLFVAIGHSPNTAIFEGQ--LELENGYI-KVQSGIHGNATQTS-IPGVFAAGDVMDHIYRQAITSAGT  302 (321)
T ss_pred             CCCCeEEEEECCEEEEEeCCccChhHhhcc--ccccCCEE-EECCCCcccccccC-CCCEEECeeccCCCcceEEEEehh
Confidence                  257999999999999998765532  22222222 11110    12335 69999999986321      1334


Q ss_pred             HHHHHHHHHHHHcC
Q 037525          131 CEYQSKWIAGVLSG  144 (182)
Q Consensus       131 ~e~qa~~ia~~l~g  144 (182)
                      .-..|.++.+++.+
T Consensus       303 g~~Aa~~~~~~l~~  316 (321)
T PRK10262        303 GCMAALDAERYLDG  316 (321)
T ss_pred             HHHHHHHHHHHHHh
Confidence            45667777777754

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.27  E-value=3.9e-11  Score=103.15  Aligned_cols=140  Identities=14%  Similarity=0.079  Sum_probs=85.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEeccCCCCCCCC------CCCC-CCeEEcceeEEeeCCC----eEEEc----
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSVADGTYEK------QPGF-DNMWLHSMIESAHDNG----AVVFR----   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~~~~~~~~------~~~~-~~i~~~~~v~~~~~~~----~v~~~----   64 (182)
                      +|+|||+|++|+|+|..+.+.+. +|++++|+....+...      +... -++.....+.++.+++    +|++.    
T Consensus       275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~  354 (457)
T PRK11749        275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMEL  354 (457)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEe
Confidence            58999999999999999998754 8999998754322110      0000 0233345556664322    25542    


Q ss_pred             -------------CC--cEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-cc
Q 037525           65 -------------NG--HTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IP  127 (182)
Q Consensus        65 -------------dg--~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~  127 (182)
                                   +|  +++++|.||+|+|++++..++.....+.++. +.+ ........++ .|++|.+|+...+ ..
T Consensus       355 ~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i-~vd~~~~~Ts-~~~VfA~GD~~~~~~~  432 (457)
T PRK11749        355 GEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTI-IADDETGRTS-LPGVFAGGDIVTGAAT  432 (457)
T ss_pred             cCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCE-EeCCCCCccC-CCCEEEeCCcCCCchH
Confidence                         22  3579999999999999966654322233332 222 2222122334 6999999998743 23


Q ss_pred             ccHHHHHHHHHHHHH
Q 037525          128 FPLCEYQSKWIAGVL  142 (182)
Q Consensus       128 ~~~~e~qa~~ia~~l  142 (182)
                      ...+..|++.+|..+
T Consensus       433 ~~~A~~~G~~aA~~I  447 (457)
T PRK11749        433 VVWAVGDGKDAAEAI  447 (457)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            456666777666554

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.27  E-value=1.3e-10  Score=99.49  Aligned_cols=141  Identities=17%  Similarity=0.200  Sum_probs=100.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCCC---eEEEcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDNG---AVVFRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~~---~v~~~dg   66 (182)
                      +++|||||..|+|+|..+++.+.+|+++.|.+.+.. ++         .+... -++..+..++++..++   .+.+++|
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g  254 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDG  254 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecC
Confidence            479999999999999999999999999999876521 11         01110 1234456666665422   3667777


Q ss_pred             c--EEecCEEEEecccccCCCCCCC-CCceecCCC-ccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHH
Q 037525           67 H--TVHADVILHCTGYKYHFPFLET-NGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGV  141 (182)
Q Consensus        67 ~--~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~  141 (182)
                      +  ++++|.|++|+|-+|+++-|.- ..++++++. .+ ... ..+.++ .|++|.+|+...+ ...+.+..|++.++..
T Consensus       255 ~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I-~VD-~~~~Tn-vp~IyA~GDV~~~~~Lah~A~~eg~iaa~~  331 (454)
T COG1249         255 EGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFI-KVD-DQMTTN-VPGIYAIGDVIGGPMLAHVAMAEGRIAAEN  331 (454)
T ss_pred             CCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCE-EeC-CccccC-CCCEEEeeccCCCcccHhHHHHHHHHHHHH
Confidence            6  6789999999999999885432 234565553 33 233 223334 6999999999543 4568899999999999


Q ss_pred             HcC
Q 037525          142 LSG  144 (182)
Q Consensus       142 l~g  144 (182)
                      +.|
T Consensus       332 i~g  334 (454)
T COG1249         332 IAG  334 (454)
T ss_pred             HhC
Confidence            987

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.26  E-value=1.9e-10  Score=99.19  Aligned_cols=142  Identities=13%  Similarity=0.084  Sum_probs=95.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCC-CeE--EEc--
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDN-GAV--VFR--   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~-~~v--~~~--   64 (182)
                      +|+|||+|++|+|+|..+++.+++|+++++.+.... .+         .+... -++..+..++++.++ +++  .+.  
T Consensus       176 ~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~  255 (466)
T PRK06115        176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPA  255 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEc
Confidence            589999999999999999999999999998764311 10         01111 134445677777642 233  332  


Q ss_pred             -CC--cEEecCEEEEecccccCCCCCCCC-CceecCCCcc-ccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHH
Q 037525           65 -NG--HTVHADVILHCTGYKYHFPFLETN-GIVTMDDNRV-GPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWI  138 (182)
Q Consensus        65 -dg--~~~~~D~vi~atG~~~~~~~l~~~-~~~~~~~~~~-~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~i  138 (182)
                       +|  +.+++|.||+|+|++|+.+.+..+ ..+..++..+ ...|..   ++ .|++|.+|++... ...+.+..|++.+
T Consensus       256 ~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~---Ts-~~~IyA~GD~~~~~~la~~A~~~g~~a  331 (466)
T PRK06115        256 AGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHR---TS-VPGVWVIGDVTSGPMLAHKAEDEAVAC  331 (466)
T ss_pred             CCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCee---cC-CCCEEEeeecCCCcccHHHHHHHHHHH
Confidence             23  468999999999999998765321 2233332222 122222   34 6999999998753 3467889999999


Q ss_pred             HHHHcCCC
Q 037525          139 AGVLSGQI  146 (182)
Q Consensus       139 a~~l~g~~  146 (182)
                      +..+.|..
T Consensus       332 a~~i~~~~  339 (466)
T PRK06115        332 IERIAGKA  339 (466)
T ss_pred             HHHHcCCC
Confidence            99998763

>PRK06370 mercuric reductase; Validated

Probab=99.26  E-value=1.9e-10  Score=98.95  Aligned_cols=143  Identities=11%  Similarity=0.025  Sum_probs=94.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCC-Ce--EEEc--
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDN-GA--VVFR--   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~-~~--v~~~--   64 (182)
                      +|+|||+|++|+|+|..|++.+++|+++++++.+.. .+         .+... -++..+..+.++.++ ++  +.+.  
T Consensus       173 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~  252 (463)
T PRK06370        173 HLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCN  252 (463)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeC
Confidence            589999999999999999999999999998765321 00         01111 133445677777642 22  3332  


Q ss_pred             C-CcEEecCEEEEecccccCCCCCC-CCCceecCCCccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHH
Q 037525           65 N-GHTVHADVILHCTGYKYHFPFLE-TNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGV  141 (182)
Q Consensus        65 d-g~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~  141 (182)
                      + ++++++|.||+|+|.+|+.+.+. ...++..++........++- .+ .|++|.+|++... .....+..|++.+|..
T Consensus       253 ~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~-t~-~~~IyAiGD~~~~~~~~~~A~~~g~~aa~n  330 (463)
T PRK06370        253 GGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLR-TT-NPGIYAAGDCNGRGAFTHTAYNDARIVAAN  330 (463)
T ss_pred             CCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCc-CC-CCCEEEeeecCCCcccHHHHHHHHHHHHHH
Confidence            3 34689999999999999987442 11234443322112222222 24 6999999998743 2346788999999999


Q ss_pred             HcCC
Q 037525          142 LSGQ  145 (182)
Q Consensus       142 l~g~  145 (182)
                      +.+.
T Consensus       331 i~~~  334 (463)
T PRK06370        331 LLDG  334 (463)
T ss_pred             HhCC
Confidence            9864

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.26  E-value=3.6e-11  Score=102.73  Aligned_cols=142  Identities=15%  Similarity=0.141  Sum_probs=95.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC--CCC---------CCCCC-CeEEcceeEEeeCCCeE--EEcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT--YEK---------QPGFD-NMWLHSMIESAHDNGAV--VFRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~--~~~---------~~~~~-~i~~~~~v~~~~~~~~v--~~~dg   66 (182)
                      +|+|||+|++|+|+|..+.+.+++|+++.+++....  ++.         +...+ ++.....|+++.+++.+  ...++
T Consensus       151 ~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~  230 (444)
T PRK09564        151 NIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDK  230 (444)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCC
Confidence            589999999999999999999999999988764311  110         00111 34445677787643322  22345


Q ss_pred             cEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCC-----------cccccHHHHH
Q 037525           67 HTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK-----------VIPFPLCEYQ  134 (182)
Q Consensus        67 ~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~-----------~~~~~~~e~q  134 (182)
                      .++++|.+|+|+|+.++.+++... +++.++ +.+ ....++- .+ .|++|.+|++..           ......+..|
T Consensus       231 ~~i~~d~vi~a~G~~p~~~~l~~~-gl~~~~~g~i-~vd~~~~-t~-~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~q  306 (444)
T PRK09564        231 GEYEADVVIVATGVKPNTEFLEDT-GLKTLKNGAI-IVDEYGE-TS-IENIYAAGDCATIYNIVSNKNVYVPLATTANKL  306 (444)
T ss_pred             CEEEcCEEEECcCCCcCHHHHHhc-CccccCCCCE-EECCCcc-cC-CCCEEEeeeEEEEEeccCCCeeeccchHHHHHH
Confidence            578999999999999988777653 333322 223 2222222 24 699999999863           1235688999


Q ss_pred             HHHHHHHHcCCC
Q 037525          135 SKWIAGVLSGQI  146 (182)
Q Consensus       135 a~~ia~~l~g~~  146 (182)
                      ++.+|..|.|..
T Consensus       307 g~~~a~ni~g~~  318 (444)
T PRK09564        307 GRMVGENLAGRH  318 (444)
T ss_pred             HHHHHHHhcCCC
Confidence            999999998853

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.25  E-value=5e-11  Score=109.11  Aligned_cols=142  Identities=11%  Similarity=0.060  Sum_probs=98.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC--CC---------CCCCCC-CeEEcceeEEeeCC-----CeEEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT--YE---------KQPGFD-NMWLHSMIESAHDN-----GAVVF   63 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~--~~---------~~~~~~-~i~~~~~v~~~~~~-----~~v~~   63 (182)
                      +++|||+|.+|+|+|..|++.+.+|+++++.+.+..  ++         .+...+ ++.....++++.++     ..+.+
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~  226 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRF  226 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEE
Confidence            489999999999999999999999999998765321  10         011111 23445667777532     14778


Q ss_pred             cCCcEEecCEEEEecccccCCCCCCCCCceecCCC-ccccccccccCCCCCCCEEEEeccCCc-----ccccHHHHHHHH
Q 037525           64 RNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKV-----IPFPLCEYQSKW  137 (182)
Q Consensus        64 ~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~-----~~~~~~e~qa~~  137 (182)
                      .||+++++|.||+|+|.+|+..++.. .++++++. .+ ....++.. + .|++|.+|++...     .....+..||+.
T Consensus       227 ~dG~~i~~D~Vv~A~G~rPn~~L~~~-~Gl~~~~~G~I-~VD~~l~T-s-~p~IYAiGD~a~~~~~~~gl~~~a~~~a~v  302 (847)
T PRK14989        227 ADGSELEVDFIVFSTGIRPQDKLATQ-CGLAVAPRGGI-VINDSCQT-S-DPDIYAIGECASWNNRVFGLVAPGYKMAQV  302 (847)
T ss_pred             CCCCEEEcCEEEECCCcccCchHHhh-cCccCCCCCcE-EECCCCcC-C-CCCEEEeecceeEcCcccccHHHHHHHHHH
Confidence            89999999999999999999876543 33444332 22 22223222 4 6999999998631     234567889999


Q ss_pred             HHHHHcCCC
Q 037525          138 IAGVLSGQI  146 (182)
Q Consensus       138 ia~~l~g~~  146 (182)
                      +|..|.|..
T Consensus       303 aa~~i~g~~  311 (847)
T PRK14989        303 AVDHLLGSE  311 (847)
T ss_pred             HHHHhcCCC
Confidence            999999864

>TIGR02053 MerA mercuric reductase

Probab=99.24  E-value=2.3e-10  Score=98.47  Aligned_cols=142  Identities=16%  Similarity=0.108  Sum_probs=94.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCC-C--eEEEcC-
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDN-G--AVVFRN-   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~-~--~v~~~d-   65 (182)
                      +|+|||+|.+|+|+|..|++.+.+|+++++++.... .+         .+... -++..+..|+++..+ +  .+.+.+ 
T Consensus       168 ~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~  247 (463)
T TIGR02053       168 SLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKP  247 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeC
Confidence            589999999999999999999999999998764321 10         01111 123445667777532 2  234432 


Q ss_pred             --CcEEecCEEEEecccccCCCCCC-CCCceecCCC-ccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHH
Q 037525           66 --GHTVHADVILHCTGYKYHFPFLE-TNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAG  140 (182)
Q Consensus        66 --g~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~  140 (182)
                        ++++++|.||+|+|.+|+.+.+. ....++.++. .+ ....++- .+ .|++|.+|++... .....+..|++.+|.
T Consensus       248 ~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i-~vd~~~~-Ts-~~~VyAiGD~~~~~~~~~~A~~~g~~aa~  324 (463)
T TIGR02053       248 GGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGI-LVDETLR-TS-NPGIYAAGDVTGGLQLEYVAAKEGVVAAE  324 (463)
T ss_pred             CCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcE-eECCCcc-CC-CCCEEEeeecCCCcccHhHHHHHHHHHHH
Confidence              34689999999999999987432 1123343322 22 2222222 24 6999999998753 345788999999999


Q ss_pred             HHcCC
Q 037525          141 VLSGQ  145 (182)
Q Consensus       141 ~l~g~  145 (182)
                      .+.+.
T Consensus       325 ni~~~  329 (463)
T TIGR02053       325 NALGG  329 (463)
T ss_pred             HhcCC
Confidence            99875

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.24  E-value=1.7e-10  Score=99.13  Aligned_cols=143  Identities=16%  Similarity=0.139  Sum_probs=95.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCCCCeEEcceeEEeeCCC--eEEE--cCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGFDNMWLHSMIESAHDNG--AVVF--RNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~~~i~~~~~v~~~~~~~--~v~~--~dg   66 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|++.... ++         .+...-++..+..+.++.+++  .+++  .+|
T Consensus       171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~I~i~~~~~v~~i~~~~~~~v~~~~~~~  250 (460)
T PRK06292        171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKEFKIKLGAKVTSVEKSGDEKVEELEKGG  250 (460)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhccEEEcCCEEEEEEEcCCceEEEEEcCC
Confidence            589999999999999999999999999998765321 10         011111233456777776432  3553  344


Q ss_pred             --cEEecCEEEEecccccCCCCCC-CCCceecCCCccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHH
Q 037525           67 --HTVHADVILHCTGYKYHFPFLE-TNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVL  142 (182)
Q Consensus        67 --~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l  142 (182)
                        +++++|.||+|+|.+|+.+++. ...+++.++........++-. + .|++|.+|++... .....+..|++.+|..+
T Consensus       251 ~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s-~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i  328 (460)
T PRK06292        251 KTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQT-S-VPGIYAAGDVNGKPPLLHEAADEGRIAAENA  328 (460)
T ss_pred             ceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCccc-C-CCCEEEEEecCCCccchhHHHHHHHHHHHHh
Confidence              3579999999999999988643 112344433221122222222 4 6999999998743 34578999999999999


Q ss_pred             cCC
Q 037525          143 SGQ  145 (182)
Q Consensus       143 ~g~  145 (182)
                      .+.
T Consensus       329 ~~~  331 (460)
T PRK06292        329 AGD  331 (460)
T ss_pred             cCC
Confidence            873

>PLN02546 glutathione reductase

Probab=99.24  E-value=2.1e-10  Score=100.89  Aligned_cols=140  Identities=18%  Similarity=0.188  Sum_probs=94.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCC---------CCCCCCCe--EEcceeEEeeC--CCeEEE--c
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYE---------KQPGFDNM--WLHSMIESAHD--NGAVVF--R   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~---------~~~~~~~i--~~~~~v~~~~~--~~~v~~--~   64 (182)
                      +|+|||+|++|+|+|..|++.+++|+++.+.+... .++         .+.. .+|  ..+..+.++.+  ++.+.+  .
T Consensus       254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~-~GV~i~~~~~v~~i~~~~~g~v~v~~~  332 (558)
T PLN02546        254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSL-RGIEFHTEESPQAIIKSADGSLSLKTN  332 (558)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHH-CCcEEEeCCEEEEEEEcCCCEEEEEEC
Confidence            58999999999999999999999999999876431 111         0111 133  34556677753  233333  3


Q ss_pred             CCcEEecCEEEEecccccCCCCCC-CCCceecCC-Ccc-ccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHH
Q 037525           65 NGHTVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRV-GPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAG  140 (182)
Q Consensus        65 dg~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~-~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~  140 (182)
                      +++...+|.||+|+|++++.+++. ...++++++ +.+ .+-|..+   + .|++|.+|++... ...+.+..|++.+|.
T Consensus       333 ~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T---s-~p~IYAaGDv~~~~~l~~~A~~~g~~~a~  408 (558)
T PLN02546        333 KGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT---S-VPSIWAVGDVTDRINLTPVALMEGGALAK  408 (558)
T ss_pred             CeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCcee---C-CCCEEEeeccCCCcccHHHHHHHHHHHHH
Confidence            454445899999999999988653 222344433 223 1233332   4 6999999998743 446788899999999


Q ss_pred             HHcCC
Q 037525          141 VLSGQ  145 (182)
Q Consensus       141 ~l~g~  145 (182)
                      .+.|.
T Consensus       409 ~i~g~  413 (558)
T PLN02546        409 TLFGN  413 (558)
T ss_pred             HHcCC
Confidence            99874

>PRK12831 putative oxidoreductase; Provisional

Probab=99.24  E-value=8.2e-11  Score=101.42  Aligned_cols=140  Identities=15%  Similarity=0.074  Sum_probs=82.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCC-----CCCCe--EEcceeEEeeC--CC---eEEEc----
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQP-----GFDNM--WLHSMIESAHD--NG---AVVFR----   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~-----~~~~i--~~~~~v~~~~~--~~---~v~~~----   64 (182)
                      +|+|||+|++|+|+|..+.+.+.+|++++|+....+.....     ....+  .....+.++..  ++   +|.+.    
T Consensus       283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~  362 (464)
T PRK12831        283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMEL  362 (464)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEe
Confidence            59999999999999999999988999999876422211100     00122  22233344421  11   12221    


Q ss_pred             --------------CCc--EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCcc-
Q 037525           65 --------------NGH--TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKVI-  126 (182)
Q Consensus        65 --------------dg~--~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~~-  126 (182)
                                    +|+  .+++|.||+|+|+.++..++....++..+. +.+ ........++ .|++|.+|+...+. 
T Consensus       363 ~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i-~vd~~~~~Ts-~pgVfAaGD~~~g~~  440 (464)
T PRK12831        363 GEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCI-VADEETGLTS-KEGVFAGGDAVTGAA  440 (464)
T ss_pred             cCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcE-EECCCCCccC-CCCEEEeCCCCCCch
Confidence                          333  479999999999999987765422344432 222 2222223334 69999999986432 


Q ss_pred             cccHHHHHHHHHHHHH
Q 037525          127 PFPLCEYQSKWIAGVL  142 (182)
Q Consensus       127 ~~~~~e~qa~~ia~~l  142 (182)
                      ....+..+++.+|..+
T Consensus       441 ~v~~Ai~~G~~AA~~I  456 (464)
T PRK12831        441 TVILAMGAGKKAAKAI  456 (464)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            2344444444444443

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.23  E-value=2.6e-10  Score=101.82  Aligned_cols=145  Identities=15%  Similarity=0.064  Sum_probs=95.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCCCCe--EEcceeEEeeCCC---eEEE--
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGFDNM--WLHSMIESAHDNG---AVVF--   63 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~~~i--~~~~~v~~~~~~~---~v~~--   63 (182)
                      +|+|||+|.+|+|+|..+++.+++|+++++.+.+.. ++         .+.....|  ..+..|+++.+++   .+.+  
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~  393 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGH  393 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEE
Confidence            589999999999999999999999999998765321 11         01111123  3456677775421   2433  


Q ss_pred             cC-------C--------cEEecCEEEEecccccCCCCCCC-CCceecCCCcc-ccccccccC--CCCCCCEEEEeccCC
Q 037525           64 RN-------G--------HTVHADVILHCTGYKYHFPFLET-NGIVTMDDNRV-GPLYKHVFP--PVLAPWLSFVGLPWK  124 (182)
Q Consensus        64 ~d-------g--------~~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~~~-~~ly~~~~~--~~~~p~l~~iG~~~~  124 (182)
                      .+       +        +++++|.||||||.+|+++++.. ...+..+++.+ ..-|..+..  ++..|++|.+|++..
T Consensus       394 ~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g  473 (659)
T PTZ00153        394 SERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANG  473 (659)
T ss_pred             eccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCC
Confidence            21       1        26899999999999999887642 12233333323 123333321  111489999999874


Q ss_pred             c-ccccHHHHHHHHHHHHHcCC
Q 037525          125 V-IPFPLCEYQSKWIAGVLSGQ  145 (182)
Q Consensus       125 ~-~~~~~~e~qa~~ia~~l~g~  145 (182)
                      . ...+.+..|++.++..|.|.
T Consensus       474 ~~~La~~A~~qg~~aa~ni~g~  495 (659)
T PTZ00153        474 KQMLAHTASHQALKVVDWIEGK  495 (659)
T ss_pred             CccCHHHHHHHHHHHHHHHcCC
Confidence            3 34578899999999999875

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.23  E-value=2.8e-10  Score=98.33  Aligned_cols=144  Identities=15%  Similarity=0.132  Sum_probs=96.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCC-Ce--EEEcC-
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDN-GA--VVFRN-   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~-~~--v~~~d-   65 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++++.+.. .+         .+... -++..+..|+++..+ ++  +.+.+ 
T Consensus       185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~  264 (475)
T PRK06327        185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDA  264 (475)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeC
Confidence            589999999999999999999999999998765421 00         01111 133445677777642 23  44444 


Q ss_pred             -C--cEEecCEEEEecccccCCCCCCC-CCceecCCCccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHH
Q 037525           66 -G--HTVHADVILHCTGYKYHFPFLET-NGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAG  140 (182)
Q Consensus        66 -g--~~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~  140 (182)
                       |  +.+++|.||+|+|++|+.+++.. ..++..+++........+ ..+ .|++|.+|++.. ......+..|++.++.
T Consensus       265 ~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~Ts-~~~VyA~GD~~~~~~~~~~A~~~G~~aa~  342 (475)
T PRK06327        265 DGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHC-RTN-VPNVYAIGDVVRGPMLAHKAEEEGVAVAE  342 (475)
T ss_pred             CCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCC-ccC-CCCEEEEEeccCCcchHHHHHHHHHHHHH
Confidence             3  35799999999999999886532 123344332211222222 224 699999999864 3345678899999999


Q ss_pred             HHcCCC
Q 037525          141 VLSGQI  146 (182)
Q Consensus       141 ~l~g~~  146 (182)
                      .+.|..
T Consensus       343 ~i~g~~  348 (475)
T PRK06327        343 RIAGQK  348 (475)
T ss_pred             HHcCCC
Confidence            998753

>PRK13748 putative mercuric reductase; Provisional

Probab=99.22  E-value=2e-10  Score=101.03  Aligned_cols=141  Identities=16%  Similarity=0.130  Sum_probs=93.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC---------CCCCC-CeEEcceeEEeeC-CCeEEEc-CCcE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---------QPGFD-NMWLHSMIESAHD-NGAVVFR-NGHT   68 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~---------~~~~~-~i~~~~~v~~~~~-~~~v~~~-dg~~   68 (182)
                      +|+|||+|++|+|+|..|++.+++|+++.|...+...+.         +...+ ++..+..++++.. ++.+.+. ++.+
T Consensus       272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~  351 (561)
T PRK13748        272 RLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGE  351 (561)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCe
Confidence            589999999999999999999999999998542211110         11111 2334566777753 2233332 2336


Q ss_pred             EecCEEEEecccccCCCCCC-CCCceecCCC-cc-ccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHHHcC
Q 037525           69 VHADVILHCTGYKYHFPFLE-TNGIVTMDDN-RV-GPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGVLSG  144 (182)
Q Consensus        69 ~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~-~~-~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l~g  144 (182)
                      +++|.||+|+|++|+..++. ...++++++. .+ ..-|..+   + .|++|.+|++.. ....+.+..|++.++..+.|
T Consensus       352 i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T---s-~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g  427 (561)
T PRK13748        352 LRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRT---S-VPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTG  427 (561)
T ss_pred             EEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCccc---C-CCCEEEeeecCCCccchhHHHHHHHHHHHHHcC
Confidence            89999999999999987653 2233444332 22 1233332   4 699999999864 33456788899999999987


Q ss_pred             C
Q 037525          145 Q  145 (182)
Q Consensus       145 ~  145 (182)
                      .
T Consensus       428 ~  428 (561)
T PRK13748        428 G  428 (561)
T ss_pred             C
Confidence            4

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.22  E-value=2.8e-10  Score=98.27  Aligned_cols=141  Identities=13%  Similarity=0.107  Sum_probs=94.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCCCCeEEcceeEEeeC-CCe--EEEcCC-
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGFDNMWLHSMIESAHD-NGA--VVFRNG-   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~~~i~~~~~v~~~~~-~~~--v~~~dg-   66 (182)
                      +|+|||+|++|+|+|..+++.+++|+++++.+.... .+         .+...-++..+..++++.. +++  +.+.++ 
T Consensus       176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~  255 (471)
T PRK06467        176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKK  255 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCC
Confidence            589999999999999999999999999998765321 11         0111112344566777652 123  344442 


Q ss_pred             ---cEEecCEEEEecccccCCCCCCC-CCceecCCCc-c-ccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHH
Q 037525           67 ---HTVHADVILHCTGYKYHFPFLET-NGIVTMDDNR-V-GPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIA  139 (182)
Q Consensus        67 ---~~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~~-~-~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia  139 (182)
                         +++++|.||+|+|++|+.+++.. ..++++++.. + ..-|..+   + .|++|.+|++.. ......+..|++.++
T Consensus       256 ~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t---~-~p~VyAiGDv~~~~~la~~A~~eG~~aa  331 (471)
T PRK06467        256 APAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT---N-VPHIFAIGDIVGQPMLAHKGVHEGHVAA  331 (471)
T ss_pred             CcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc---C-CCCEEEehhhcCCcccHHHHHHHHHHHH
Confidence               35899999999999999886532 1234443322 2 1223332   4 699999999864 334678899999999


Q ss_pred             HHHcCC
Q 037525          140 GVLSGQ  145 (182)
Q Consensus       140 ~~l~g~  145 (182)
                      ..+.|.
T Consensus       332 ~~i~g~  337 (471)
T PRK06467        332 EVIAGK  337 (471)
T ss_pred             HHHcCC
Confidence            999875

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.21  E-value=1.3e-10  Score=99.71  Aligned_cols=138  Identities=18%  Similarity=0.187  Sum_probs=87.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC------CCCCCCe--EEcceeEEeeC--CC---eEEEc---
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK------QPGFDNM--WLHSMIESAHD--NG---AVVFR---   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~------~~~~~~i--~~~~~v~~~~~--~~---~v~~~---   64 (182)
                      +|+|||+|++|+|+|..+++.+.+|++++|+....+...      +.. ..|  .....+.++.+  ++   +|++.   
T Consensus       274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~-~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~  352 (449)
T TIGR01316       274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEE-EGVKFHFLCQPVEIIGDEEGNVRAVKFRKMD  352 (449)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHh-CCCEEEeccCcEEEEEcCCCeEEEEEEEEEE
Confidence            589999999999999999999999999998754321110      111 122  22334444432  11   23332   


Q ss_pred             ------CC-----------cEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-
Q 037525           65 ------NG-----------HTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-  125 (182)
Q Consensus        65 ------dg-----------~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-  125 (182)
                            +|           ..+++|.||+|+|+.++..++... ++.++. +.+ ..... +.++ .|++|.+|+...+ 
T Consensus       353 ~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~-gl~~~~~G~i-~vd~~-~~Ts-~~~VfA~GD~~~g~  428 (449)
T TIGR01316       353 CQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETT-RLKTSERGTI-VVDED-QRTS-IPGVFAGGDIILGA  428 (449)
T ss_pred             ecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhcc-CcccCCCCeE-EeCCC-CccC-CCCEEEecCCCCCc
Confidence                  22           257999999999999997766542 333332 222 11111 2224 6999999998643 


Q ss_pred             ccccHHHHHHHHHHHHHc
Q 037525          126 IPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus       126 ~~~~~~e~qa~~ia~~l~  143 (182)
                      .....+..|++.+|..+.
T Consensus       429 ~~v~~Ai~~G~~AA~~I~  446 (449)
T TIGR01316       429 ATVIRAMGQGKRAAKSIN  446 (449)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            345678888888887764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PTZ00058 glutathione reductase; Provisional

Probab=99.21  E-value=5e-10  Score=98.50  Aligned_cols=141  Identities=16%  Similarity=0.138  Sum_probs=94.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCCC---------CCCC-CCeEEcceeEEeeCC--CeE--EEcC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYEK---------QPGF-DNMWLHSMIESAHDN--GAV--VFRN   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~~---------~~~~-~~i~~~~~v~~~~~~--~~v--~~~d   65 (182)
                      +|+|||+|.+|+|+|..+++.+++|+++++++.+. .++.         +... -++..+..+.++.++  +++  .+.+
T Consensus       239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~  318 (561)
T PTZ00058        239 RIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSD  318 (561)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECC
Confidence            58999999999999999999999999999876431 1110         1111 134445667777642  123  3334


Q ss_pred             C-cEEecCEEEEecccccCCCCCCCCC-ceecCCCcc-ccccccccCCCCCCCEEEEeccCC------------------
Q 037525           66 G-HTVHADVILHCTGYKYHFPFLETNG-IVTMDDNRV-GPLYKHVFPPVLAPWLSFVGLPWK------------------  124 (182)
Q Consensus        66 g-~~~~~D~vi~atG~~~~~~~l~~~~-~~~~~~~~~-~~ly~~~~~~~~~p~l~~iG~~~~------------------  124 (182)
                      + +++++|.|++|+|++|+.+++..+. .+..+++.+ .+-|..   ++ .|++|.+|++..                  
T Consensus       319 ~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe~lq---Ts-~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~  394 (561)
T PTZ00058        319 GRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDNQR---TS-VKHIYAVGDCCMVKKNQEIEDLNLLKLYNE  394 (561)
T ss_pred             CCEEEECCEEEECcCCCCCccccCccccceecCCCeEEECcCCc---cC-CCCEEEeEeccCcccccccccccccccccc
Confidence            4 4689999999999999988775321 122222322 122333   34 699999999864                  


Q ss_pred             ----------------c-ccccHHHHHHHHHHHHHcCC
Q 037525          125 ----------------V-IPFPLCEYQSKWIAGVLSGQ  145 (182)
Q Consensus       125 ----------------~-~~~~~~e~qa~~ia~~l~g~  145 (182)
                                      . ...+.+..|++.++..+.|.
T Consensus       395 ~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~  432 (561)
T PTZ00058        395 EPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP  432 (561)
T ss_pred             ccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence                            1 22467899999999999875

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.21  E-value=1.5e-10  Score=96.51  Aligned_cols=137  Identities=20%  Similarity=0.207  Sum_probs=87.0

Q ss_pred             CEEEEcCCccHHHHHHHHhcc------CCeEEEEeccCCCC-CCC-C--------CCCC-CCeEEcceeEEeeCCCeEEE
Q 037525            1 VIILVGSSASAVDICRDLAGV------AKEVHLVSRSVADG-TYE-K--------QPGF-DNMWLHSMIESAHDNGAVVF   63 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~------a~~V~l~~r~~~~~-~~~-~--------~~~~-~~i~~~~~v~~~~~~~~v~~   63 (182)
                      +|+|||+|.+|+|+|.+|++.      ..+|+++ +.+... ... .        +... -++..+..++++.++ .+.+
T Consensus       147 ~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~v~~  224 (364)
T TIGR03169       147 RLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG-ALIL  224 (364)
T ss_pred             eEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC-eEEe
Confidence            589999999999999999863      2479998 433221 110 0        0011 123345678888654 7899


Q ss_pred             cCCcEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc------ccccHHHHHHH
Q 037525           64 RNGHTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV------IPFPLCEYQSK  136 (182)
Q Consensus        64 ~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~------~~~~~~e~qa~  136 (182)
                      .+|+++++|.||+|+|.+++ +++... .+..+. +.+ .....+-..+ .|++|.+|++...      .....+..||+
T Consensus       225 ~~g~~i~~D~vi~a~G~~p~-~~l~~~-gl~~~~~g~i-~vd~~l~~~~-~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~  300 (364)
T TIGR03169       225 ADGRTLPADAILWATGARAP-PWLAES-GLPLDEDGFL-RVDPTLQSLS-HPHVFAAGDCAVITDAPRPKAGVYAVRQAP  300 (364)
T ss_pred             CCCCEEecCEEEEccCCChh-hHHHHc-CCCcCCCCeE-EECCccccCC-CCCEEEeeeeeecCCCCCCCchHHHHHhHH
Confidence            89999999999999999987 454432 223322 222 2222222234 6999999998631      12345777888


Q ss_pred             HHHHHHc
Q 037525          137 WIAGVLS  143 (182)
Q Consensus       137 ~ia~~l~  143 (182)
                      .+|+.+.
T Consensus       301 ~~a~ni~  307 (364)
T TIGR03169       301 ILAANLR  307 (364)
T ss_pred             HHHHHHH
Confidence            7777664

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.20  E-value=5.2e-10  Score=96.05  Aligned_cols=142  Identities=13%  Similarity=0.149  Sum_probs=95.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeC-CCeEE--EcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHD-NGAVV--FRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~-~~~v~--~~dg   66 (182)
                      +|+|||+|.+|+|+|..|++.+.+|+++.|.+.... .+         .+... -++.....++++.. ++++.  +.+|
T Consensus       172 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g  251 (461)
T TIGR01350       172 SLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGG  251 (461)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCC
Confidence            589999999999999999999999999998764321 10         01111 13444567777753 23443  3466


Q ss_pred             --cEEecCEEEEecccccCCC--CCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHH
Q 037525           67 --HTVHADVILHCTGYKYHFP--FLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAG  140 (182)
Q Consensus        67 --~~~~~D~vi~atG~~~~~~--~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~  140 (182)
                        +++++|.||+|+|..|+.+  ++.. ..+..+. +.+ .....+ ..+ .|++|.+|++... .....+..|++.+|.
T Consensus       252 ~~~~i~~D~vi~a~G~~p~~~~l~~~~-~gl~~~~~g~i-~vd~~l-~t~-~~~IyaiGD~~~~~~~~~~A~~~g~~aa~  327 (461)
T TIGR01350       252 ETETLTGEKVLVAVGRKPNTEGLGLEN-LGVELDERGRI-VVDEYM-RTN-VPGIYAIGDVIGGPMLAHVASHEGIVAAE  327 (461)
T ss_pred             cEEEEEeCEEEEecCCcccCCCCCcHh-hCceECCCCcE-eeCCCc-ccC-CCCEEEeeecCCCcccHHHHHHHHHHHHH
Confidence              4689999999999999977  3333 2233333 222 222222 224 6999999998643 346788999999999


Q ss_pred             HHcCCC
Q 037525          141 VLSGQI  146 (182)
Q Consensus       141 ~l~g~~  146 (182)
                      .+.+..
T Consensus       328 ~i~~~~  333 (461)
T TIGR01350       328 NIAGKE  333 (461)
T ss_pred             HHcCCC
Confidence            998753

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.20  E-value=2.1e-10  Score=105.72  Aligned_cols=143  Identities=15%  Similarity=0.109  Sum_probs=89.3

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCCCC---CCC--CCCeE--EcceeEEeeCCCeE----------
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTYEK---QPG--FDNMW--LHSMIESAHDNGAV----------   61 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~~~---~~~--~~~i~--~~~~v~~~~~~~~v----------   61 (182)
                      +|+|||||++|+|+|..+.+.  +++|++++|+....++..   +..  ...+.  ....+.++.+++.+          
T Consensus       670 rVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~AleeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~  749 (1019)
T PRK09853        670 HVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEALEDGVEFKELLNPESFDADGTLTCRVMKLGEP  749 (1019)
T ss_pred             EEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHHHcCCEEEeCCceEEEEcCCcEEEEEEEeecc
Confidence            599999999999999998876  358999998753221110   000  01121  12222333211111          


Q ss_pred             ---------EEcCCcEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCC-cccccH
Q 037525           62 ---------VFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPL  130 (182)
Q Consensus        62 ---------~~~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~  130 (182)
                               ...++.++++|.||+|+|+.++.+++... ++.++. +.+ .. ...+..+ .|++|.+|+... ......
T Consensus       750 d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~-GL~ld~~G~I-~V-DetlqTs-~pgVFAaGD~a~Gp~tvv~  825 (1019)
T PRK09853        750 DESGRRRPVETGETVTLEADTVITAIGEQVDTELLKAN-GIPLDKKGWP-VV-DANGETS-LTNVYMIGDVQRGPSTIVA  825 (1019)
T ss_pred             cCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhc-CccccCCCCE-Ee-CCCcccC-CCCEEEEeccccCchHHHH
Confidence                     11223468999999999999998887542 344332 222 22 1222334 699999999864 345678


Q ss_pred             HHHHHHHHHHHHcCCCC
Q 037525          131 CEYQSKWIAGVLSGQIV  147 (182)
Q Consensus       131 ~e~qa~~ia~~l~g~~~  147 (182)
                      +..|++.+|..+.+...
T Consensus       826 Ai~qGr~AA~nI~~~~~  842 (1019)
T PRK09853        826 AIADARRAADAILSREG  842 (1019)
T ss_pred             HHHHHHHHHHHHhhhcC
Confidence            88999999999987654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.19  E-value=6.3e-10  Score=96.01  Aligned_cols=143  Identities=13%  Similarity=0.102  Sum_probs=94.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeC--CCeE---EEc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHD--NGAV---VFR   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~--~~~v---~~~   64 (182)
                      +|+|||+|++|+|+|..|++.+++|+++.|++.... .+         .+... -++..+..++++..  ++++   .+.
T Consensus       182 ~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~  261 (472)
T PRK05976        182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEH  261 (472)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEe
Confidence            589999999999999999999999999998764311 10         01111 13344566777752  2233   234


Q ss_pred             CCc--EEecCEEEEecccccCCCCCCCC-CceecCCCccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHH
Q 037525           65 NGH--TVHADVILHCTGYKYHFPFLETN-GIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAG  140 (182)
Q Consensus        65 dg~--~~~~D~vi~atG~~~~~~~l~~~-~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~  140 (182)
                      +|+  ++++|.||+|+|.+|+.+.+..+ ..+..+++.+ ....++ ..+ .|++|.+|+.... .....+..|++.++.
T Consensus       262 ~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i-~Vd~~l-~ts-~~~IyAiGD~~~~~~~~~~A~~~g~~aa~  338 (472)
T PRK05976        262 NGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFI-QIDDFC-QTK-ERHIYAIGDVIGEPQLAHVAMAEGEMAAE  338 (472)
T ss_pred             CCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEE-EECCCc-ccC-CCCEEEeeecCCCcccHHHHHHHHHHHHH
Confidence            664  57899999999999998765321 1222222222 222222 223 5999999998643 346788899999999


Q ss_pred             HHcCCC
Q 037525          141 VLSGQI  146 (182)
Q Consensus       141 ~l~g~~  146 (182)
                      .+.|..
T Consensus       339 ~i~g~~  344 (472)
T PRK05976        339 HIAGKK  344 (472)
T ss_pred             HHcCCC
Confidence            998753

>PRK14727 putative mercuric reductase; Provisional

Probab=99.17  E-value=5.4e-10  Score=96.69  Aligned_cols=141  Identities=16%  Similarity=0.085  Sum_probs=93.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC---------CCCCC-CCeEEcceeEEeeC-CCeEE--EcCCc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE---------KQPGF-DNMWLHSMIESAHD-NGAVV--FRNGH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~---------~~~~~-~~i~~~~~v~~~~~-~~~v~--~~dg~   67 (182)
                      +|+|||+|++|+|+|..+++.+++|+++.+...+...+         .+... -++..+..++++.. ++++.  +.++ 
T Consensus       190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-  268 (479)
T PRK14727        190 SLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-  268 (479)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-
Confidence            58999999999999999999999999998753221111         01111 12334556777652 22333  3344 


Q ss_pred             EEecCEEEEecccccCCCCCCC-CCceecCC-CccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHHHcC
Q 037525           68 TVHADVILHCTGYKYHFPFLET-NGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGVLSG  144 (182)
Q Consensus        68 ~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l~g  144 (182)
                      ++++|.||+|+|..|+..++.. ..+++.+. +.+ .....+- .+ .|++|.+|++.. ....+.+..|++.++..+.|
T Consensus       269 ~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i-~Vd~~~~-Ts-~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g  345 (479)
T PRK14727        269 ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAI-VVNPAME-TS-APDIYAAGDCSDLPQFVYVAAAAGSRAGINMTG  345 (479)
T ss_pred             eEEeCEEEEccCCCCCccCCCchhhCceecCCCCE-EECCCee-cC-CCCEEEeeecCCcchhhhHHHHHHHHHHHHHcC
Confidence            5889999999999999886532 12344432 222 2222222 24 699999999874 34467888999999999987


Q ss_pred             C
Q 037525          145 Q  145 (182)
Q Consensus       145 ~  145 (182)
                      .
T Consensus       346 ~  346 (479)
T PRK14727        346 G  346 (479)
T ss_pred             C
Confidence            5

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.17  E-value=9.3e-10  Score=94.66  Aligned_cols=142  Identities=14%  Similarity=0.149  Sum_probs=95.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCC-CeEEEc-CCc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDN-GAVVFR-NGH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~-~~v~~~-dg~   67 (182)
                      +|+|||+|++|+|+|..+++...+|+++.+++.... .+         .+... -++..+..|+++..+ ..+.+. +|+
T Consensus       172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~  251 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGS  251 (458)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCc
Confidence            589999999999999999999899999998764321 00         01111 134445677777643 245554 443


Q ss_pred             --EEecCEEEEecccccCCCCCCC-CCceecCCCccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHc
Q 037525           68 --TVHADVILHCTGYKYHFPFLET-NGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus        68 --~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~  143 (182)
                        ++++|.||+|+|.+|+.+++.. ..++..+++.+ ..-.++- .+ .|++|.+|+...+ .....+..|++.++..+.
T Consensus       252 ~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi-~Vd~~~~-ts-~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~  328 (458)
T PRK06912        252 IQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGI-SVNEHMQ-TN-VPHIYACGDVIGGIQLAHVAFHEGTTAALHAS  328 (458)
T ss_pred             eEEEEeCEEEEecCCccCCCCCCchhcCceecCCCE-EeCCCee-cC-CCCEEEEeecCCCcccHHHHHHHHHHHHHHHc
Confidence              5789999999999999876531 12233333333 2222222 24 6999999998743 345688899999999998


Q ss_pred             CC
Q 037525          144 GQ  145 (182)
Q Consensus       144 g~  145 (182)
                      |.
T Consensus       329 g~  330 (458)
T PRK06912        329 GE  330 (458)
T ss_pred             CC
Confidence            75

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.17  E-value=9.9e-10  Score=93.96  Aligned_cols=142  Identities=12%  Similarity=0.087  Sum_probs=94.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCCC-CeEEcceeEEeeCC-CeEEEc-CCc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGFD-NMWLHSMIESAHDN-GAVVFR-NGH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~~-~i~~~~~v~~~~~~-~~v~~~-dg~   67 (182)
                      +|+|||+|.+|+|+|..|++.+.+|++++|++.+.. .+         .+...+ ++..+..|+++..+ +.+.+. ++.
T Consensus       160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g  239 (441)
T PRK08010        160 HLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA  239 (441)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC
Confidence            589999999999999999999999999998764321 00         011111 23445677777642 344443 233


Q ss_pred             EEecCEEEEecccccCCCCCCC-CCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHcC
Q 037525           68 TVHADVILHCTGYKYHFPFLET-NGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLSG  144 (182)
Q Consensus        68 ~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~g  144 (182)
                      ++++|.||+|+|.+|+.+++.. ..++..++ +.+ ....++ ..+ .|++|.+|++... ...+.+..|++.++..+.|
T Consensus       240 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i-~vd~~~-~Ts-~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g  316 (441)
T PRK08010        240 QLAVDALLIASGRQPATASLHPENAGIAVNERGAI-VVDKYL-HTT-ADNIWAMGDVTGGLQFTYISLDDYRIVRDELLG  316 (441)
T ss_pred             eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcE-EECCCc-ccC-CCCEEEeeecCCCccchhHHHHHHHHHHHHHcC
Confidence            5889999999999999876532 22344433 223 222222 224 6999999998753 3456778889999998887


Q ss_pred             C
Q 037525          145 Q  145 (182)
Q Consensus       145 ~  145 (182)
                      .
T Consensus       317 ~  317 (441)
T PRK08010        317 E  317 (441)
T ss_pred             C
Confidence            3

>PRK14694 putative mercuric reductase; Provisional

Probab=99.16  E-value=6.5e-10  Score=95.85  Aligned_cols=142  Identities=14%  Similarity=0.124  Sum_probs=93.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC---------CCCCC-CeEEcceeEEeeCC-CeEEEc-CCcE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---------QPGFD-NMWLHSMIESAHDN-GAVVFR-NGHT   68 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~---------~~~~~-~i~~~~~v~~~~~~-~~v~~~-dg~~   68 (182)
                      +|+|||+|++|+|+|..|++.+++|+++.+...+...+.         +...+ ++..+..++++..+ +.+.+. ++.+
T Consensus       180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~  259 (468)
T PRK14694        180 RLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGT  259 (468)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCE
Confidence            589999999999999999999999999987532211100         00111 23445677777532 233332 3446


Q ss_pred             EecCEEEEecccccCCCCCCC-CCceecCCCccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHHHcCC
Q 037525           69 VHADVILHCTGYKYHFPFLET-NGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGVLSGQ  145 (182)
Q Consensus        69 ~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l~g~  145 (182)
                      +++|.||+|+|..|+.+++.. ...++.+++.+ ..-.++- ++ .|++|.+|++.. ....+.+..|++.++..+.|.
T Consensus       260 i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i-~vd~~~~-Ts-~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~  335 (468)
T PRK14694        260 LRAEQLLVATGRTPNTENLNLESIGVETERGAI-RIDEHLQ-TT-VSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGG  335 (468)
T ss_pred             EEeCEEEEccCCCCCcCCCCchhcCcccCCCeE-eeCCCcc-cC-CCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCC
Confidence            899999999999999887642 12233333323 2222222 24 699999999864 334567888999999999775

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.16  E-value=1.5e-09  Score=92.85  Aligned_cols=142  Identities=13%  Similarity=0.094  Sum_probs=92.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCCC-CeEEcceeEEeeCC-CeEEE-cCCc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGFD-NMWLHSMIESAHDN-GAVVF-RNGH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~~-~i~~~~~v~~~~~~-~~v~~-~dg~   67 (182)
                      +|+|||+|++|+|+|..+++.+.+|+++.|++.+.. .+.         +...+ ++..+..++++..+ +.+.. .+|+
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~  238 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDE  238 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCe
Confidence            589999999999999999999999999999765421 100         01111 23344567777642 24433 4677


Q ss_pred             EEecCEEEEecccccCCCCCCCC-CceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHcC
Q 037525           68 TVHADVILHCTGYKYHFPFLETN-GIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLSG  144 (182)
Q Consensus        68 ~~~~D~vi~atG~~~~~~~l~~~-~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~g  144 (182)
                      ++++|.||+|+|..|+.+.+.-. ..+..+. +.+ ....++ ..+ .|++|.+|++..+ .....+..|++.++..+.|
T Consensus       239 ~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i-~vd~~~-~t~-~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~  315 (438)
T PRK07251        239 TYRFDALLYATGRKPNTEPLGLENTDIELTERGAI-KVDDYC-QTS-VPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTG  315 (438)
T ss_pred             EEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcE-EECCCc-ccC-CCCEEEeeecCCCcccHhHHHHHHHHHHHHHcC
Confidence            88999999999999997765321 1223322 222 222222 224 6999999998753 3346677788888888776


Q ss_pred             C
Q 037525          145 Q  145 (182)
Q Consensus       145 ~  145 (182)
                      .
T Consensus       316 ~  316 (438)
T PRK07251        316 D  316 (438)
T ss_pred             C
Confidence            4

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.14  E-value=8.3e-11  Score=98.21  Aligned_cols=138  Identities=14%  Similarity=0.192  Sum_probs=87.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC--------------eEEEEeccCCC-CCCCC--------CCCCCC--eEEcceeEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAK--------------EVHLVSRSVAD-GTYEK--------QPGFDN--MWLHSMIESA   55 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~--------------~V~l~~r~~~~-~~~~~--------~~~~~~--i~~~~~v~~~   55 (182)
                      .++|||||++|+|.|.||++.-.              +|+++.-.+.. .+++.        +.....  +.....|..+
T Consensus       220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V  299 (491)
T KOG2495|consen  220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKV  299 (491)
T ss_pred             EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEee
Confidence            37999999999999999998521              47777655422 22211        111123  3445677777


Q ss_pred             eCCCeEEEc--CCc--EEecCEEEEecccccCCCCCCCCCceecCCCc---c-ccccccccCCCCCCCEEEEeccC-C--
Q 037525           56 HDNGAVVFR--NGH--TVHADVILHCTGYKYHFPFLETNGIVTMDDNR---V-GPLYKHVFPPVLAPWLSFVGLPW-K--  124 (182)
Q Consensus        56 ~~~~~v~~~--dg~--~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~---~-~~ly~~~~~~~~~p~l~~iG~~~-~--  124 (182)
                      ++ +.|...  ||+  +++.-.++|+||-.+. |+..... ..++++.   + .+-|..  ..+ .+|+|.+|++. .  
T Consensus       300 ~~-~~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm-~~i~e~~rr~L~vDE~Lr--V~G-~~nvfAiGDca~~~~  373 (491)
T KOG2495|consen  300 TE-KTIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLM-KQIDEQGRRGLAVDEWLR--VKG-VKNVFAIGDCADQRG  373 (491)
T ss_pred             cC-cEEEEEcCCCceeeecceEEEecCCCCCc-hhhhhHh-hcCCccCceeeeeeceee--ccC-cCceEEecccccccc
Confidence            66 356655  454  5789999999998875 4443211 1111111   1 123333  355 68999999997 2  


Q ss_pred             -cccccHHHHHHHHHHHHHcC
Q 037525          125 -VIPFPLCEYQSKWIAGVLSG  144 (182)
Q Consensus       125 -~~~~~~~e~qa~~ia~~l~g  144 (182)
                       .++.+.++.|+.|+|+.+..
T Consensus       374 ~~~tAQVA~QqG~yLAk~fn~  394 (491)
T KOG2495|consen  374 LKPTAQVAEQQGAYLAKNFNK  394 (491)
T ss_pred             CccHHHHHHHHHHHHHHHHHH
Confidence             24678999999999999973

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.12  E-value=2.7e-10  Score=99.41  Aligned_cols=118  Identities=13%  Similarity=0.204  Sum_probs=79.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCC----CCCCCCC--CeEEcceeEEeeCC-C---eEEEcC---C-
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTY----EKQPGFD--NMWLHSMIESAHDN-G---AVVFRN---G-   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~----~~~~~~~--~i~~~~~v~~~~~~-~---~v~~~d---g-   66 (182)
                      +|+|||+|++|+|+|..|++.+++|+++.+.+.....    ..+....  ++..+..++++.++ +   +|++.+   | 
T Consensus       354 ~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~  433 (515)
T TIGR03140       354 DVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGE  433 (515)
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCc
Confidence            5899999999999999999999999999987654211    1111112  33445667777643 2   366654   2 


Q ss_pred             -cEEecCEEEEecccccCCCCCCCCCceecCC-Ccc-ccccccccCCCCCCCEEEEeccCC
Q 037525           67 -HTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRV-GPLYKHVFPPVLAPWLSFVGLPWK  124 (182)
Q Consensus        67 -~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~-~~ly~~~~~~~~~p~l~~iG~~~~  124 (182)
                       +.+++|.||+|+|..|+.+++...  +..+. +.+ ..-+..   ++ .|++|.+|++..
T Consensus       434 ~~~i~~D~vi~a~G~~Pn~~~l~~~--~~~~~~G~I~vd~~~~---Ts-~p~IyAaGDv~~  488 (515)
T TIGR03140       434 EKQLDLDGVFVQIGLVPNTEWLKDA--VELNRRGEIVIDERGR---TS-VPGIFAAGDVTT  488 (515)
T ss_pred             EEEEEcCEEEEEeCCcCCchHHhhh--cccCCCCeEEECCCCC---CC-CCCEEEcccccC
Confidence             357999999999999998887642  33332 222 122322   24 699999999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.12  E-value=8.3e-10  Score=96.37  Aligned_cols=138  Identities=14%  Similarity=0.153  Sum_probs=88.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCCe--EEcceeEEeeCC-C---eEEEcC---Cc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDNM--WLHSMIESAHDN-G---AVVFRN---GH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~i--~~~~~v~~~~~~-~---~v~~~d---g~   67 (182)
                      +|+|||+|++|+|+|..|+..+++|+++.+++.+....    .+....+|  ..+..+.++.++ +   .+.+.+   |+
T Consensus       353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~  432 (517)
T PRK15317        353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGE  432 (517)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCc
Confidence            58999999999999999999999999999876542211    11111233  345567777654 2   355543   43


Q ss_pred             --EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCcc------cccHHHHHHHHH
Q 037525           68 --TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKVI------PFPLCEYQSKWI  138 (182)
Q Consensus        68 --~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~~------~~~~~e~qa~~i  138 (182)
                        ++++|.|++|+|++|+.+|+...  +..+. +.+ .....+- ++ .|++|.+|+....+      ........|..+
T Consensus       433 ~~~i~~D~v~~~~G~~p~~~~l~~~--v~~~~~g~i-~vd~~l~-Ts-~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~  507 (517)
T PRK15317        433 EHHLELEGVFVQIGLVPNTEWLKGT--VELNRRGEI-IVDARGA-TS-VPGVFAAGDCTTVPYKQIIIAMGEGAKAALSA  507 (517)
T ss_pred             EEEEEcCEEEEeECCccCchHHhhh--eeeCCCCcE-EECcCCC-CC-CCCEEECccccCCCCCEEEEhhhhHHHHHHHH
Confidence              47899999999999998888653  33332 223 2222222 34 69999999986422      123334455555


Q ss_pred             HHHHc
Q 037525          139 AGVLS  143 (182)
Q Consensus       139 a~~l~  143 (182)
                      +.++.
T Consensus       508 ~~~l~  512 (517)
T PRK15317        508 FDYLI  512 (517)
T ss_pred             HHHHh
Confidence            55544

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.10  E-value=1.1e-09  Score=91.22  Aligned_cols=140  Identities=12%  Similarity=0.053  Sum_probs=83.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEeccCCCCCCC------CCCCCC-CeEEcceeEEeeCCC---eEEEc-----
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSVADGTYE------KQPGFD-NMWLHSMIESAHDNG---AVVFR-----   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~~~~~~~------~~~~~~-~i~~~~~v~~~~~~~---~v~~~-----   64 (182)
                      +|+|||+|++|+|+|..|+.... +|+++.|+.......      .+...+ ++.....+.++.+++   .|.+.     
T Consensus       174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~  253 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLG  253 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEec
Confidence            48999999999999999987655 499999875322110      011110 122233444554322   12221     


Q ss_pred             -------------C--CcEEecCEEEEecccccCCCCCCCCCceecCCC-ccccccccccCCCCCCCEEEEeccCC-ccc
Q 037525           65 -------------N--GHTVHADVILHCTGYKYHFPFLETNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWK-VIP  127 (182)
Q Consensus        65 -------------d--g~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~  127 (182)
                                   +  ++.+++|.||+|+|++|+..+.....++..+.+ .+ ...... ..+ .|++|.+|++.. ...
T Consensus       254 ~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i-~vd~~~-~t~-~~~vyaiGD~~~~~~~  330 (352)
T PRK12770        254 EPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEI-VVDEKH-MTS-REGVFAAGDVVTGPSK  330 (352)
T ss_pred             CcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcE-eeCCCc-ccC-CCCEEEEcccccCcch
Confidence                         2  236799999999999998766543122333322 22 222221 124 599999999864 334


Q ss_pred             ccHHHHHHHHHHHHHc
Q 037525          128 FPLCEYQSKWIAGVLS  143 (182)
Q Consensus       128 ~~~~e~qa~~ia~~l~  143 (182)
                      ...+..|++.+|..+.
T Consensus       331 ~~~A~~~g~~aa~~i~  346 (352)
T PRK12770        331 IGKAIKSGLRAAQSIH  346 (352)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5567777777776654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.08  E-value=2e-09  Score=96.43  Aligned_cols=143  Identities=14%  Similarity=0.115  Sum_probs=83.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCCCCCCC-------CCCCCCeEEcceeEEeeC-CCeE-----EE---
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVADGTYEK-------QPGFDNMWLHSMIESAHD-NGAV-----VF---   63 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~~~~~~-------~~~~~~i~~~~~v~~~~~-~~~v-----~~---   63 (182)
                      +|+|||+|++|+|+|..+.+.+ ++|++++|+....++..       +..--++.....+.++.+ ++.+     .+   
T Consensus       325 ~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~  404 (652)
T PRK12814        325 KVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQG  404 (652)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEec
Confidence            5899999999999999999864 57999998763221110       000002222233333321 1111     11   


Q ss_pred             ------------cCCc--EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCcc-c
Q 037525           64 ------------RNGH--TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKVI-P  127 (182)
Q Consensus        64 ------------~dg~--~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~~-~  127 (182)
                                  .+|+  .+++|.||+|+|+.++..++... ++.++. +.+ ......+.++ .|++|.+|+...+. .
T Consensus       405 ~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~-gl~~~~~G~I-~vd~~~~~Ts-~pgVfA~GDv~~g~~~  481 (652)
T PRK12814        405 EPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAA-GIGTSRNGTV-KVDPETLQTS-VAGVFAGGDCVTGADI  481 (652)
T ss_pred             ccCCCCCCcceecCCceEEEECCEEEECCCCcCCccccccc-CccccCCCcE-eeCCCCCcCC-CCCEEEcCCcCCCchH
Confidence                        1233  47899999999999998887542 334332 222 2322233345 69999999986432 2


Q ss_pred             ccHHHH----HHHHHHHHHcCCC
Q 037525          128 FPLCEY----QSKWIAGVLSGQI  146 (182)
Q Consensus       128 ~~~~e~----qa~~ia~~l~g~~  146 (182)
                      ...+..    .|..|.++|.|+.
T Consensus       482 v~~Ai~~G~~AA~~I~~~L~g~~  504 (652)
T PRK12814        482 AINAVEQGKRAAHAIDLFLNGKP  504 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCC
Confidence            334444    4555555666653

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.08  E-value=9.8e-10  Score=101.63  Aligned_cols=146  Identities=16%  Similarity=0.118  Sum_probs=89.1

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCCCC---CCC--CCCeE--EcceeEEeeCC-------------
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTYEK---QPG--FDNMW--LHSMIESAHDN-------------   58 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~~~---~~~--~~~i~--~~~~v~~~~~~-------------   58 (182)
                      +|+|||||++|+|+|..+.+.  +++|++++|+....++..   +..  ...+.  ....+.++.++             
T Consensus       668 ~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~aleeGVe~~~~~~p~~I~~g~l~v~~~~l~~~d  747 (1012)
T TIGR03315       668 HVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEALEDGVDFKELLSPESFEDGTLTCEVMKLGEPD  747 (1012)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHHHcCCEEEeCCceEEEECCeEEEEEEEeeccc
Confidence            589999999999999998875  468999998753211100   000  01121  11222222211             


Q ss_pred             --C-eEEEcCCc--EEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCC-cccccHHH
Q 037525           59 --G-AVVFRNGH--TVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCE  132 (182)
Q Consensus        59 --~-~v~~~dg~--~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e  132 (182)
                        + .....+|+  ++++|.||+|+|+.++.+++... ++.++.............++ .|++|.+|+... ......+.
T Consensus       748 ~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~-GL~ld~~G~I~VD~~~~~Ts-~pgVFAaGD~a~GP~tVv~AI  825 (1012)
T TIGR03315       748 ASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKN-GIPLDEYGWPVVNQATGETN-ITNVFVIGDANRGPATIVEAI  825 (1012)
T ss_pred             CCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhc-CcccCCCCCEEeCCCCCccC-CCCEEEEeCcCCCccHHHHHH
Confidence              1 11222454  47999999999999998877542 34433322112222222334 699999999864 34567889


Q ss_pred             HHHHHHHHHHcCCCCC
Q 037525          133 YQSKWIAGVLSGQIVL  148 (182)
Q Consensus       133 ~qa~~ia~~l~g~~~l  148 (182)
                      .|++.+|..+.++...
T Consensus       826 aqGr~AA~nIl~~~~~  841 (1012)
T TIGR03315       826 ADGRKAANAILSREGL  841 (1012)
T ss_pred             HHHHHHHHHHhccccC
Confidence            9999999999866443

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.06  E-value=1.3e-09  Score=99.17  Aligned_cols=140  Identities=16%  Similarity=0.127  Sum_probs=82.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCe-EEEEeccCCCCCCCCCC-----CCCCeE--EcceeEEeeC--CC---eEEEc---
Q 037525            1 VIILVGSSASAVDICRDLAGVAKE-VHLVSRSVADGTYEKQP-----GFDNMW--LHSMIESAHD--NG---AVVFR---   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~-V~l~~r~~~~~~~~~~~-----~~~~i~--~~~~v~~~~~--~~---~v~~~---   64 (182)
                      +|+|||||++|+|+|..+.+.+.+ |++++|+....++....     ....+.  ....+.++..  ++   +|.+.   
T Consensus       572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~  651 (752)
T PRK12778        572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKME  651 (752)
T ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEE
Confidence            589999999999999999997665 99999876432211100     001222  2233333321  11   12221   


Q ss_pred             ---------------CCc--EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCcc
Q 037525           65 ---------------NGH--TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKVI  126 (182)
Q Consensus        65 ---------------dg~--~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~~  126 (182)
                                     +|+  ++++|.||+|+|+.++..++.....+.++. +.+ ...... .++ .|++|.+|+...+.
T Consensus       652 ~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i-~vd~~~-~Ts-~~gVfA~GD~~~g~  728 (752)
T PRK12778        652 LGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTI-VVDEEM-QSS-IPGIYAGGDIVRGG  728 (752)
T ss_pred             ecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCE-EeCCCC-CCC-CCCEEEeCCccCCc
Confidence                           122  479999999999999976654322333332 222 222222 334 69999999987532


Q ss_pred             -cccHHHHHHHHHHHHHc
Q 037525          127 -PFPLCEYQSKWIAGVLS  143 (182)
Q Consensus       127 -~~~~~e~qa~~ia~~l~  143 (182)
                       ....+..|++.+|..+.
T Consensus       729 ~~vv~Av~~G~~AA~~I~  746 (752)
T PRK12778        729 ATVILAMGDGKRAAAAID  746 (752)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence             34556666666666553

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.00  E-value=2.2e-09  Score=99.47  Aligned_cols=147  Identities=12%  Similarity=0.079  Sum_probs=88.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCC-----CCC--eEEcceeEEeeCC--C-eE---EE----
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPG-----FDN--MWLHSMIESAHDN--G-AV---VF----   63 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~-----~~~--i~~~~~v~~~~~~--~-~v---~~----   63 (182)
                      +|+|||||++|+|.|..+.+.+.+|++++|+....++.....     ...  +.....++++..+  + .+   .+    
T Consensus       449 ~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~  528 (944)
T PRK12779        449 EVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNE  528 (944)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEE
Confidence            599999999999999999998889999998753222211000     011  2222233343211  0 11   11    


Q ss_pred             -------------cCCc--EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCcc-
Q 037525           64 -------------RNGH--TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKVI-  126 (182)
Q Consensus        64 -------------~dg~--~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~~-  126 (182)
                                   .+|+  .+++|.||+|+|+.++..+......++.+. +.+ ......+.++ .|++|..|+...+. 
T Consensus       529 l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I-~vd~~~~~Ts-~pgVFAaGD~~~G~~  606 (944)
T PRK12779        529 LGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTI-EVEKGSQRTS-IKGVYSGGDAARGGS  606 (944)
T ss_pred             eccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCE-EECCCCCccC-CCCEEEEEcCCCChH
Confidence                         1343  479999999999998854332222333332 222 2222223334 69999999987543 


Q ss_pred             cccHHHHHHHHHHHHHcCCCCCC
Q 037525          127 PFPLCEYQSKWIAGVLSGQIVLP  149 (182)
Q Consensus       127 ~~~~~e~qa~~ia~~l~g~~~lP  149 (182)
                      ....+-.+++.+|..+...+.+.
T Consensus       607 ~vv~Ai~eGr~AA~~I~~~L~~~  629 (944)
T PRK12779        607 TAIRAAGDGQAAAKEIVGEIPFT  629 (944)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc
Confidence            45667778888888887655553

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=8e-10  Score=85.65  Aligned_cols=119  Identities=14%  Similarity=0.131  Sum_probs=78.7

Q ss_pred             EEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCCeEE--cceeEEeeCC----CeEEEc---CC--
Q 037525            2 IILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDNMWL--HSMIESAHDN----GAVVFR---NG--   66 (182)
Q Consensus         2 V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~i~~--~~~v~~~~~~----~~v~~~---dg--   66 (182)
                      .+|||||.||+|.|..|.+++++||+++|++.++...    +..+.++|..  +..+.+..++    +++.+.   .|  
T Consensus       160 laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~  239 (322)
T KOG0404|consen  160 LAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEE  239 (322)
T ss_pred             eEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcc
Confidence            5799999999999999999999999999998875421    1223345543  2222222222    134443   24  


Q ss_pred             cEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccC
Q 037525           67 HTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPW  123 (182)
Q Consensus        67 ~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~  123 (182)
                      +.++++.+++++|-.|++.|++..  ++++.+...-.-.+....+ .|++|..|+..
T Consensus       240 ~dl~v~GlFf~IGH~Pat~~l~gq--ve~d~~GYi~t~pgts~Ts-vpG~FAAGDVq  293 (322)
T KOG0404|consen  240 TDLPVSGLFFAIGHSPATKFLKGQ--VELDEDGYIVTRPGTSLTS-VPGVFAAGDVQ  293 (322)
T ss_pred             cccccceeEEEecCCchhhHhcCc--eeeccCceEEeccCccccc-ccceeeccccc
Confidence            347899999999999999999863  4443332111222333344 79999999875

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.97  E-value=7.7e-09  Score=91.09  Aligned_cols=136  Identities=14%  Similarity=0.162  Sum_probs=84.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCC--eEEcceeEEeeCCCe---EEE---cCCcE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDN--MWLHSMIESAHDNGA---VVF---RNGHT   68 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~--i~~~~~v~~~~~~~~---v~~---~dg~~   68 (182)
                      +|+|||||++|+|+|..|++.+++|++++|++.+....    .+....+  +..+..|+++.+++.   +.+   .+|+.
T Consensus       145 ~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~  224 (555)
T TIGR03143       145 DVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEI  224 (555)
T ss_pred             EEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccccCHHHHHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCE
Confidence            58999999999999999999999999999987542111    0111123  344667888865433   233   35654


Q ss_pred             E----ecCE----EEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc--ccccHHHHHHHH
Q 037525           69 V----HADV----ILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV--IPFPLCEYQSKW  137 (182)
Q Consensus        69 ~----~~D~----vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~  137 (182)
                      .    ++|.    ||+|+|+.|+..++..  .+.+++ +.+ ....++ ..+ .|++|.+|+....  ..+..+..|++.
T Consensus       225 ~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~--~l~l~~~G~I-~vd~~~-~Ts-~p~IyAaGDv~~~~~~~v~~A~~~G~~  299 (555)
T TIGR03143       225 TEYKAPKDAGTFGVFVFVGYAPSSELFKG--VVELDKRGYI-PTNEDM-ETN-VPGVYAAGDLRPKELRQVVTAVADGAI  299 (555)
T ss_pred             EEEeccccccceEEEEEeCCCCChhHHhh--hcccCCCCeE-EeCCcc-ccC-CCCEEEceeccCCCcchheeHHhhHHH
Confidence            3    3566    9999999999887764  233332 223 222222 224 6999999997521  123344444444


Q ss_pred             HHHH
Q 037525          138 IAGV  141 (182)
Q Consensus       138 ia~~  141 (182)
                      +|..
T Consensus       300 Aa~~  303 (555)
T TIGR03143       300 AATS  303 (555)
T ss_pred             HHHH
Confidence            4443

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.96  E-value=7.4e-09  Score=89.48  Aligned_cols=147  Identities=16%  Similarity=0.148  Sum_probs=79.9

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccCCCCCCC----CCCC-----------CC--CeEEcceeEEeeC-CCe-
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSVADGTYE----KQPG-----------FD--NMWLHSMIESAHD-NGA-   60 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~~~~~~~----~~~~-----------~~--~i~~~~~v~~~~~-~~~-   60 (182)
                      +|+|||+|++|+|+|..+.+. +++|++..+........    ..+.           ..  ++.....++++.. ++. 
T Consensus       283 ~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v  362 (471)
T PRK12810        283 HVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKV  362 (471)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEE
Confidence            589999999999999877765 56888665433111000    0000           01  2233445556642 222 


Q ss_pred             --EEE-----cCC---------cEEecCEEEEecccccCCC-CCCCCCceecCCCccccccccccCCCCCCCEEEEeccC
Q 037525           61 --VVF-----RNG---------HTVHADVILHCTGYKYHFP-FLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPW  123 (182)
Q Consensus        61 --v~~-----~dg---------~~~~~D~vi~atG~~~~~~-~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~  123 (182)
                        |.+     .+|         .++++|.||+|+|+.++.. ++.. .++.++...........+.++ .|++|.+|+..
T Consensus       363 ~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~-~gl~~~~~g~i~vd~~~~~Ts-~~gVfa~GD~~  440 (471)
T PRK12810        363 TGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQ-FGVELDERGRVAAPDNAYQTS-NPKVFAAGDMR  440 (471)
T ss_pred             EEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccc-cCcccCCCCCEEeCCCcccCC-CCCEEEccccC
Confidence              222     122         3579999999999999753 5543 234443222111211112234 69999999987


Q ss_pred             Ccc-cccHHHHHHHH----HHHHHcCCCCCC
Q 037525          124 KVI-PFPLCEYQSKW----IAGVLSGQIVLP  149 (182)
Q Consensus       124 ~~~-~~~~~e~qa~~----ia~~l~g~~~lP  149 (182)
                      .+. ....+..|++.    +.++|.|...+|
T Consensus       441 ~g~~~~~~Av~~G~~AA~~i~~~L~g~~~~~  471 (471)
T PRK12810        441 RGQSLVVWAIAEGRQAARAIDAYLMGSTALP  471 (471)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            532 23334444444    555555655444

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.93  E-value=1e-08  Score=95.72  Aligned_cols=150  Identities=13%  Similarity=0.098  Sum_probs=84.7

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccCCCCCCCCCC-----CCCCe--EEcceeEEee--CCC---eEEEc---
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSVADGTYEKQP-----GFDNM--WLHSMIESAH--DNG---AVVFR---   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~~~~~~~~~~-----~~~~i--~~~~~v~~~~--~~~---~v~~~---   64 (182)
                      +|+|||||++|+|+|..+.+. +++|++++|+....+.....     ....|  .....+.++.  +++   +|.+.   
T Consensus       573 ~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~  652 (1006)
T PRK12775        573 SVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEME  652 (1006)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEE
Confidence            589999999999999998886 45799999875443221100     00122  2223333442  111   12221   


Q ss_pred             --------------CCc--EEecCEEEEecccccCCCCCCCCCceecCCC-ccccccc----cccCCCCCCCEEEEeccC
Q 037525           65 --------------NGH--TVHADVILHCTGYKYHFPFLETNGIVTMDDN-RVGPLYK----HVFPPVLAPWLSFVGLPW  123 (182)
Q Consensus        65 --------------dg~--~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~-~~~~ly~----~~~~~~~~p~l~~iG~~~  123 (182)
                                    +|+  ++++|.||+|+|+.++..++.....+.++.. .+ ....    ..+.++ .|++|.+|+..
T Consensus       653 l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I-~vd~~~v~~~~~Ts-~pgVFAaGDv~  730 (1006)
T PRK12775        653 LGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNI-AADDGKLESTQSTN-LPGVFAGGDIV  730 (1006)
T ss_pred             ecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcE-EeCCCccccCcCCC-CCCEEEecCcC
Confidence                          232  4799999999999999765543212333221 11 1111    122334 69999999986


Q ss_pred             Cc-ccccHHH----HHHHHHHHHHcCCCCCCCHH
Q 037525          124 KV-IPFPLCE----YQSKWIAGVLSGQIVLPSQE  152 (182)
Q Consensus       124 ~~-~~~~~~e----~qa~~ia~~l~g~~~lP~~~  152 (182)
                      .+ .....+.    ..|..|.++|.+....|...
T Consensus       731 ~G~~~vv~Ai~~Gr~AA~~I~~~L~~~~~~~~~~  764 (1006)
T PRK12775        731 TGGATVILAMGAGRRAARSIATYLRLGKKWPITA  764 (1006)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhcCCCcCCCc
Confidence            43 2333444    44555555666665555443

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.92  E-value=9.1e-09  Score=88.31  Aligned_cols=34  Identities=41%  Similarity=0.586  Sum_probs=32.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~   34 (182)
                      +|+|||+|+||+|+|.+|++.+++|+++.|++.+
T Consensus       177 rV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~  210 (443)
T COG2072         177 RVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH  210 (443)
T ss_pred             eEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence            6999999999999999999999999999999865

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.90  E-value=3.8e-08  Score=88.31  Aligned_cols=140  Identities=18%  Similarity=0.174  Sum_probs=81.2

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccCCCCCCCC------CCCCC-CeEEcceeEEee--CCC---eEEEc---
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSVADGTYEK------QPGFD-NMWLHSMIESAH--DNG---AVVFR---   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~~~~~~~~------~~~~~-~i~~~~~v~~~~--~~~---~v~~~---   64 (182)
                      +|+|||+|++|+|.|..+.+. +++|++++|+....++..      +...+ .+.....+.++.  +++   +|.+.   
T Consensus       470 ~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~  549 (654)
T PRK12769        470 NVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTR  549 (654)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEE
Confidence            589999999999999887775 568999998754322110      00000 122233344442  111   12321   


Q ss_pred             ---------------CCc--EEecCEEEEecccccCC-CCCCCCCceecCCC-ccccccc--c-ccCCCCCCCEEEEecc
Q 037525           65 ---------------NGH--TVHADVILHCTGYKYHF-PFLETNGIVTMDDN-RVGPLYK--H-VFPPVLAPWLSFVGLP  122 (182)
Q Consensus        65 ---------------dg~--~~~~D~vi~atG~~~~~-~~l~~~~~~~~~~~-~~~~ly~--~-~~~~~~~p~l~~iG~~  122 (182)
                                     .|+  ++++|.||+|+|+.++. .++.. ..++++.. .+ ....  + .+.++ .|++|..|+.
T Consensus       550 ~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~-~gl~~~~~G~i-~vd~~~~~~~~Ts-~~gVfAaGD~  626 (654)
T PRK12769        550 LGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLES-HGVTVDKWGRI-IADVESQYRYQTS-NPKIFAGGDA  626 (654)
T ss_pred             ecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccc-cCCcCCCCCCE-EeCCCcccCcccC-CCCEEEcCCc
Confidence                           233  47999999999999974 45544 23444322 22 1110  0 12234 6999999998


Q ss_pred             CCc-ccccHHHHHHHHHHHHHc
Q 037525          123 WKV-IPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus       123 ~~~-~~~~~~e~qa~~ia~~l~  143 (182)
                      ..+ .....+..+++.+|..+.
T Consensus       627 ~~g~~~vv~Ai~~Gr~AA~~I~  648 (654)
T PRK12769        627 VRGADLVVTAMAEGRHAAQGII  648 (654)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHH
Confidence            753 334566677777666554

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.88  E-value=4.9e-08  Score=84.35  Aligned_cols=141  Identities=16%  Similarity=0.186  Sum_probs=82.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCCCCCCC------CCCCC-CeEEcceeEEeeC--CCe---EEEc---
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVADGTYEK------QPGFD-NMWLHSMIESAHD--NGA---VVFR---   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~~~~~~------~~~~~-~i~~~~~v~~~~~--~~~---v~~~---   64 (182)
                      +|+|||+|++|+|.|..+.+.. ++|++++|++...+...      +...+ ++.....+.++..  ++.   |++.   
T Consensus       284 ~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~  363 (467)
T TIGR01318       284 RVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTA  363 (467)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEE
Confidence            4899999999999999988865 68999998764322110      00000 2223334444431  111   2221   


Q ss_pred             ---------------CCc--EEecCEEEEecccccCC-CCCCCCCceecCC-Ccc--ccccccccCCCCCCCEEEEeccC
Q 037525           65 ---------------NGH--TVHADVILHCTGYKYHF-PFLETNGIVTMDD-NRV--GPLYKHVFPPVLAPWLSFVGLPW  123 (182)
Q Consensus        65 ---------------dg~--~~~~D~vi~atG~~~~~-~~l~~~~~~~~~~-~~~--~~ly~~~~~~~~~p~l~~iG~~~  123 (182)
                                     +|+  .+++|.||+|+|+.++. .++.. ..+.++. +.+  .+.|...+.++ .|++|.+|+..
T Consensus       364 ~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~-~gl~~~~~g~i~vd~~~~~~~~T~-~~gVfa~GD~~  441 (467)
T TIGR01318       364 LGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAG-HGITLDSWGRIITGDVSYLPYQTT-NPKIFAGGDAV  441 (467)
T ss_pred             ecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccc-cCccCCCCCCEEeCCccccCccCC-CCCEEEECCcC
Confidence                           122  57899999999999974 45443 2233332 222  11121222334 69999999986


Q ss_pred             Ccc-cccHHHHHHHHHHHHHc
Q 037525          124 KVI-PFPLCEYQSKWIAGVLS  143 (182)
Q Consensus       124 ~~~-~~~~~e~qa~~ia~~l~  143 (182)
                      .+. ....+..+++.+|..+.
T Consensus       442 ~~~~~~~~Ai~~G~~aA~~i~  462 (467)
T TIGR01318       442 RGADLVVTAVAEGRQAAQGIL  462 (467)
T ss_pred             CCccHHHHHHHHHHHHHHHHH
Confidence            533 23567777777776654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.87  E-value=8.2e-08  Score=83.35  Aligned_cols=146  Identities=15%  Similarity=0.132  Sum_probs=79.4

Q ss_pred             CEEEEcCCccHHHHHHHHhc-cCCeEEEEeccCCCCCC----CCCCCC-----------------C--CeEEcceeEEee
Q 037525            1 VIILVGSSASAVDICRDLAG-VAKEVHLVSRSVADGTY----EKQPGF-----------------D--NMWLHSMIESAH   56 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~-~a~~V~l~~r~~~~~~~----~~~~~~-----------------~--~i~~~~~v~~~~   56 (182)
                      +|+|||+|++|+|.|..+.+ .+++|+++++.+.....    ..+|..                 +  .+.....+.++.
T Consensus       285 ~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~  364 (485)
T TIGR01317       285 KVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFI  364 (485)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEE
Confidence            58999999999999876666 56789999875432100    000000                 0  111222333442


Q ss_pred             CC--C---eEEE--------cCC---------c--EEecCEEEEecccc-cCCCCCCCCCceecCC-CccccccccccCC
Q 037525           57 DN--G---AVVF--------RNG---------H--TVHADVILHCTGYK-YHFPFLETNGIVTMDD-NRVGPLYKHVFPP  110 (182)
Q Consensus        57 ~~--~---~v~~--------~dg---------~--~~~~D~vi~atG~~-~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~  110 (182)
                      .+  +   ++.+        .+|         +  ++++|.||+|+|+. ++.+++... ++..+. +.+ ........+
T Consensus       365 ~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~-gl~~~~~G~i-~~~~~~~~T  442 (485)
T TIGR01317       365 GDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDF-GVKKTRRGNI-SAGYDDYST  442 (485)
T ss_pred             EcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCcccccccc-CcccCCCCCE-EecCCCceE
Confidence            21  1   1221        123         2  57999999999996 777776643 333332 222 111112233


Q ss_pred             CCCCCEEEEeccCCcc-cccHHHH----HHHHHHHHHcCCCCCC
Q 037525          111 VLAPWLSFVGLPWKVI-PFPLCEY----QSKWIAGVLSGQIVLP  149 (182)
Q Consensus       111 ~~~p~l~~iG~~~~~~-~~~~~e~----qa~~ia~~l~g~~~lP  149 (182)
                      + .|++|.+|+...+. ....+..    .|..|.++|.|...+|
T Consensus       443 s-~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~~L~g~~~~~  485 (485)
T TIGR01317       443 S-IPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDRYLMGSSVLP  485 (485)
T ss_pred             C-CCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            4 69999999986432 2233444    4445555566655544

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.87  E-value=2.1e-08  Score=88.45  Aligned_cols=143  Identities=16%  Similarity=0.125  Sum_probs=83.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCCCCCCC------CCCC-CCeEEcceeEEeeCCC-e---E---EE--
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVADGTYEK------QPGF-DNMWLHSMIESAHDNG-A---V---VF--   63 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~~~~~~------~~~~-~~i~~~~~v~~~~~~~-~---v---~~--   63 (182)
                      +|+|||+|++|+|.+..+.+.. ++|++++|.+...+...      .... -++.....+.++.+++ +   +   .+  
T Consensus       269 ~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~  348 (564)
T PRK12771        269 RVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEK  348 (564)
T ss_pred             CEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEe
Confidence            5899999999999999888865 78999998754221110      0000 1233334455554211 1   1   11  


Q ss_pred             ----c-------CCc--EEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCCc-cccc
Q 037525           64 ----R-------NGH--TVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFP  129 (182)
Q Consensus        64 ----~-------dg~--~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~  129 (182)
                          .       +|+  ++++|.||+|+|+.++.+++.....+..+.+.+ ......+.++ .|++|.+|+...+ ....
T Consensus       349 ~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i-~vd~~~~~ts-~~~Vfa~GD~~~g~~~v~  426 (564)
T PRK12771        349 MELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVV-QVDPNFMMTG-RPGVFAGGDMVPGPRTVT  426 (564)
T ss_pred             cccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCE-EeCCCCccCC-CCCEEeccCcCCCchHHH
Confidence                1       232  578999999999999888876422333222222 2222233345 6999999998642 2344


Q ss_pred             HHHHHHHHHH----HHHcCC
Q 037525          130 LCEYQSKWIA----GVLSGQ  145 (182)
Q Consensus       130 ~~e~qa~~ia----~~l~g~  145 (182)
                      .+..|++.+|    ++|.|.
T Consensus       427 ~Av~~G~~aA~~i~~~L~g~  446 (564)
T PRK12771        427 TAIGHGKKAARNIDAFLGGE  446 (564)
T ss_pred             HHHHHHHHHHHHHHHHHcCC
Confidence            4555555554    445554

>PRK13984 putative oxidoreductase; Provisional

Probab=98.85  E-value=2.6e-08  Score=88.50  Aligned_cols=140  Identities=16%  Similarity=0.164  Sum_probs=77.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccC------CeEEEEeccCCC-CCCCCCCC-----CCCe--EEcceeEEeeC-CC---eEE
Q 037525            1 VIILVGSSASAVDICRDLAGVA------KEVHLVSRSVAD-GTYEKQPG-----FDNM--WLHSMIESAHD-NG---AVV   62 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a------~~V~l~~r~~~~-~~~~~~~~-----~~~i--~~~~~v~~~~~-~~---~v~   62 (182)
                      +|+|||||++|+|+|..+++.+      .+|+++...... .+......     ...+  .....+.++.. ++   +|.
T Consensus       420 ~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~  499 (604)
T PRK13984        420 SLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEGLEEGVVIYPGWGPMEVVIENDKVKGVK  499 (604)
T ss_pred             cEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHHHHHHHHcCCEEEeCCCCEEEEccCCEEEEEE
Confidence            5899999999999999999864      368887532111 11100000     0112  22222223321 11   121


Q ss_pred             Ec-----------------CC--cEEecCEEEEecccccCCCCCCCCC--ceecCCCccccccccccCCCCCCCEEEEec
Q 037525           63 FR-----------------NG--HTVHADVILHCTGYKYHFPFLETNG--IVTMDDNRVGPLYKHVFPPVLAPWLSFVGL  121 (182)
Q Consensus        63 ~~-----------------dg--~~~~~D~vi~atG~~~~~~~l~~~~--~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~  121 (182)
                      +.                 +|  .++++|.||+|+|+.++.+++....  .+..+.+.+ ..... +.++ .|++|.+|+
T Consensus       500 ~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i-~vd~~-~~Ts-~~gVfAaGD  576 (604)
T PRK13984        500 FKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRI-LTNEY-GQTS-IPWLFAGGD  576 (604)
T ss_pred             EEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeE-EeCCC-CccC-CCCEEEecC
Confidence            11                 12  3579999999999999988775321  122222322 12122 2234 699999999


Q ss_pred             cCCcccccHHHHHHHHHHHHHc
Q 037525          122 PWKVIPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus       122 ~~~~~~~~~~e~qa~~ia~~l~  143 (182)
                      ...+.....+..+++.+|..+.
T Consensus       577 ~~~~~~~v~Ai~~G~~AA~~I~  598 (604)
T PRK13984        577 IVHGPDIIHGVADGYWAAEGID  598 (604)
T ss_pred             cCCchHHHHHHHHHHHHHHHHH
Confidence            8754434455666666665543

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=2.8e-08  Score=81.65  Aligned_cols=118  Identities=15%  Similarity=0.209  Sum_probs=78.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCC----CCCCCCCCeE--EcceeEEeeCC----CeEEEcC---Cc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTY----EKQPGFDNMW--LHSMIESAHDN----GAVVFRN---GH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~----~~~~~~~~i~--~~~~v~~~~~~----~~v~~~d---g~   67 (182)
                      ||+||||||||+|.|.+|+..+++||+..=.+.....    +++.+.+|+.  .+..-+++.++    .++...|   |+
T Consensus       356 ~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge  435 (520)
T COG3634         356 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGE  435 (520)
T ss_pred             eEEEECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCc
Confidence            6999999999999999999999999998755444321    1222233443  34555667654    2455553   44


Q ss_pred             E--EecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccC
Q 037525           68 T--VHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPW  123 (182)
Q Consensus        68 ~--~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~  123 (182)
                      .  ++.+.|++-+|.-|++.||...  ++.+. +.+ -..++. ..+ .|++|..|++.
T Consensus       436 ~~~l~LeGvFVqIGL~PNT~WLkg~--vel~~rGEI-ivD~~g-~Ts-vpGvFAAGD~T  489 (520)
T COG3634         436 EHHLELEGVFVQIGLLPNTEWLKGA--VELNRRGEI-IVDARG-ETN-VPGVFAAGDCT  489 (520)
T ss_pred             eeEEEeeeeEEEEecccChhHhhch--hhcCcCccE-EEecCC-CcC-CCceeecCccc
Confidence            3  5789999999999999999863  33322 222 122222 224 69999999886

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.69  E-value=2e-07  Score=83.53  Aligned_cols=141  Identities=13%  Similarity=0.101  Sum_probs=79.0

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccCCCCCCCCCC-----CCC--CeEEcceeEEee--CCCe---EEE----
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSVADGTYEKQP-----GFD--NMWLHSMIESAH--DNGA---VVF----   63 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~~~~~~~~~~-----~~~--~i~~~~~v~~~~--~~~~---v~~----   63 (182)
                      +|+|||+|++|+|.|..+.+. +++|++++|+....++....     ...  ++.....++++.  +++.   +.+    
T Consensus       453 ~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~  532 (639)
T PRK12809        453 RVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTA  532 (639)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEE
Confidence            489999999999999887664 57899999876443221100     001  222233344443  1111   111    


Q ss_pred             --------------cCCc--EEecCEEEEecccccCC-CCCCCCCceecCC-Ccc-cccc-ccccCCCCCCCEEEEeccC
Q 037525           64 --------------RNGH--TVHADVILHCTGYKYHF-PFLETNGIVTMDD-NRV-GPLY-KHVFPPVLAPWLSFVGLPW  123 (182)
Q Consensus        64 --------------~dg~--~~~~D~vi~atG~~~~~-~~l~~~~~~~~~~-~~~-~~ly-~~~~~~~~~p~l~~iG~~~  123 (182)
                                    ..|+  .+++|.||+|+|+.++. .++.. ..++++. +.+ ..-+ ...+.++ .|++|..|+..
T Consensus       533 ~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~-~gl~~~~~G~i~vd~~~~~~~~Ts-~~gVfA~GD~~  610 (639)
T PRK12809        533 MGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQG-SGIKLDKWGLIQTGDVGYLPTQTH-LKKVFAGGDAV  610 (639)
T ss_pred             ecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccc-cCcccCCCCCEEeCCCcccCcccC-CCCEEEcCCCC
Confidence                          1222  47899999999999863 45543 2333332 222 0111 1112234 69999999987


Q ss_pred             Ccc-cccHHHHHHHHHHHHHc
Q 037525          124 KVI-PFPLCEYQSKWIAGVLS  143 (182)
Q Consensus       124 ~~~-~~~~~e~qa~~ia~~l~  143 (182)
                      .+. ....+-.+++.+|..+.
T Consensus       611 ~g~~~vv~Ai~~Gr~AA~~i~  631 (639)
T PRK12809        611 HGADLVVTAMAAGRQAARDML  631 (639)
T ss_pred             CCchHHHHHHHHHHHHHHHHH
Confidence            533 33455566666655543

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.68  E-value=1.4e-07  Score=77.54  Aligned_cols=140  Identities=23%  Similarity=0.261  Sum_probs=93.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC-CCCCC---------CCCCC-CeEEcceeEEeeC--CC--eEEEcC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD-GTYEK---------QPGFD-NMWLHSMIESAHD--NG--AVVFRN   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~-~~~~~---------~~~~~-~i~~~~~v~~~~~--~~--~v~~~d   65 (182)
                      |++|||+|+.|+|+|--++..+.+++++.|.+.. +.++.         +.... +++....++++.+  ++  .+....
T Consensus       191 r~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~  270 (478)
T KOG0405|consen  191 RVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSH  270 (478)
T ss_pred             eEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEec
Confidence            6899999999999999999999999999998754 22211         11101 2333344444432  11  334456


Q ss_pred             CcEEecCEEEEecccccCCCCCCCC-CceecCCCc-c-ccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHH
Q 037525           66 GHTVHADVILHCTGYKYHFPFLETN-GIVTMDDNR-V-GPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGV  141 (182)
Q Consensus        66 g~~~~~D~vi~atG~~~~~~~l~~~-~~~~~~~~~-~-~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~  141 (182)
                      |+...+|.++||+|-.|++.-|.-+ .+++.+.+. + ..-|.++   + .|+++.+|+... ...-|.+-+.++.++.-
T Consensus       271 ~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T---n-vp~I~avGDv~gk~~LTPVAiaagr~la~r  346 (478)
T KOG0405|consen  271 GTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT---N-VPSIWAVGDVTGKINLTPVAIAAGRKLANR  346 (478)
T ss_pred             cccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC---C-CCceEEeccccCcEecchHHHhhhhhHHHH
Confidence            6555699999999999987655432 234444332 2 3567776   4 799999999764 23457778888888877


Q ss_pred             HcC
Q 037525          142 LSG  144 (182)
Q Consensus       142 l~g  144 (182)
                      +-|
T Consensus       347 lF~  349 (478)
T KOG0405|consen  347 LFG  349 (478)
T ss_pred             hhc
Confidence            755

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=98.65  E-value=4.2e-08  Score=86.96  Aligned_cols=138  Identities=17%  Similarity=0.167  Sum_probs=95.6

Q ss_pred             EEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCC------------CCCC-CeEEcceeEEeeCC---CeEEEcCC
Q 037525            3 ILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQ------------PGFD-NMWLHSMIESAHDN---GAVVFRNG   66 (182)
Q Consensus         3 ~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~------------~~~~-~i~~~~~v~~~~~~---~~v~~~dg   66 (182)
                      +|||||.-|+|.|.-|.+.+-+|++++-.+... ...+            +... ++.+....+++.++   .++.|+||
T Consensus       149 vVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM-erQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG  227 (793)
T COG1251         149 VVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM-ERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADG  227 (793)
T ss_pred             EEEccchhhhHHHHHHHhCCCceEEEeecchHH-HHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCC
Confidence            799999999999999999999999998765321 1111            1111 23333333344321   37999999


Q ss_pred             cEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccC--Cc---ccccHHHHHHHHHHHH
Q 037525           67 HTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPW--KV---IPFPLCEYQSKWIAGV  141 (182)
Q Consensus        67 ~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~--~~---~~~~~~e~qa~~ia~~  141 (182)
                      +.+++|.||||+|++|+..+... .++.++.+.+...|.++   + +|++|.+|-+.  .+   .....+-.|++.+|..
T Consensus       228 ~~i~ad~VV~a~GIrPn~ela~~-aGlavnrGIvvnd~mqT---s-dpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~h  302 (793)
T COG1251         228 TEIPADLVVMAVGIRPNDELAKE-AGLAVNRGIVVNDYMQT---S-DPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADH  302 (793)
T ss_pred             CcccceeEEEecccccccHhHHh-cCcCcCCCeeecccccc---c-CCCeeehhhHHHhcCccceehhHHHHHHHHHHHH
Confidence            99999999999999999776543 45666665443444444   3 79999999775  22   2234556788999998


Q ss_pred             HcCCC
Q 037525          142 LSGQI  146 (182)
Q Consensus       142 l~g~~  146 (182)
                      +.+..
T Consensus       303 l~~~~  307 (793)
T COG1251         303 LCGGE  307 (793)
T ss_pred             hccCc
Confidence            88763

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.64  E-value=1.4e-07  Score=80.00  Aligned_cols=118  Identities=20%  Similarity=0.263  Sum_probs=82.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC------------CCCC-CCeEEcceeEEeeCC--C---eEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK------------QPGF-DNMWLHSMIESAHDN--G---AVV   62 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~------------~~~~-~~i~~~~~v~~~~~~--~---~v~   62 (182)
                      +|++||+|..|+|+|.+|...+++|+++++.+... .+.            +... -++...+.+.++.++  +   .|.
T Consensus       215 ~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~  293 (478)
T KOG1336|consen  215 KVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-PRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVK  293 (478)
T ss_pred             eEEEECchHHHHHHHHHHHhcCceEEEEccCccch-hhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEE
Confidence            48999999999999999999999999999875431 110            0000 133445667776542  1   367


Q ss_pred             EcCCcEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccC
Q 037525           63 FRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPW  123 (182)
Q Consensus        63 ~~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~  123 (182)
                      +.||+++++|.||+++|-+|+++++.....+. ..+.+ +.+.. |-.+ .||+|.+|+..
T Consensus       294 l~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~-~~G~i-~V~~~-f~t~-~~~VyAiGDva  350 (478)
T KOG1336|consen  294 LKDGKTLEADLVVVGIGIKPNTSFLEKGILLD-SKGGI-KVDEF-FQTS-VPNVYAIGDVA  350 (478)
T ss_pred             eccCCEeccCeEEEeeccccccccccccceec-ccCCE-eehhc-eeec-cCCccccccee
Confidence            78999999999999999999999988522222 22222 33333 3334 69999999875

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.63  E-value=1.2e-07  Score=62.27  Aligned_cols=66  Identities=17%  Similarity=0.316  Sum_probs=46.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCCC---------CCCC-CCeEEcceeEEeeCC-Ce--EEEcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYEK---------QPGF-DNMWLHSMIESAHDN-GA--VVFRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~~---------~~~~-~~i~~~~~v~~~~~~-~~--v~~~dg   66 (182)
                      +|+|||||++|+|+|..|++.+++|++++|++.+. .++.         +... -++..+..++++.++ .+  |+|+||
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            58999999999999999999999999999988653 1100         0001 134455677777642 23  777776

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.49  E-value=1.4e-06  Score=69.98  Aligned_cols=87  Identities=15%  Similarity=0.170  Sum_probs=59.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC---CCC---CCCCCCC--------------------C-CeEEcceeE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA---DGT---YEKQPGF--------------------D-NMWLHSMIE   53 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~---~~~---~~~~~~~--------------------~-~i~~~~~v~   53 (182)
                      +|+|||+|++|+..|..|++...+|+++.+.+.   +..   ....|..                    + ++.. ..+.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   80 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI   80 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence            689999999999999999999889999997642   100   0001111                    0 2222 4555


Q ss_pred             EeeCCC---eEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           54 SAHDNG---AVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        54 ~~~~~~---~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      +++.++   .+.+.+|.++.+|.+|+|||..+..+.++
T Consensus        81 ~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~  118 (300)
T TIGR01292        81 KVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIP  118 (300)
T ss_pred             EEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCC
Confidence            665432   35566777899999999999987655444

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.48  E-value=2.5e-07  Score=76.97  Aligned_cols=34  Identities=32%  Similarity=0.349  Sum_probs=28.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC--eEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~~~   34 (182)
                      +|+|||||.||+|++.+|.+...  +|+++.|+..+
T Consensus       192 ~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~  227 (341)
T PF13434_consen  192 RVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF  227 (341)
T ss_dssp             EEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred             eEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence            59999999999999999999653  89999998764

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.47  E-value=4.4e-07  Score=84.87  Aligned_cols=138  Identities=10%  Similarity=0.127  Sum_probs=85.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCCCC--CCCCCCCC-CeEEcceeEEeeCCC---eEEEc----CCcEE
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVADGT--YEKQPGFD-NMWLHSMIESAHDNG---AVVFR----NGHTV   69 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~~~--~~~~~~~~-~i~~~~~v~~~~~~~---~v~~~----dg~~~   69 (182)
                      +|+|||+|++|+|+|..|++.+ +.|+++.+++....  ...+...+ ++.....++++.+++   +|++.    +++++
T Consensus       319 ~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i  398 (985)
T TIGR01372       319 RIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVSPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRL  398 (985)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchhHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEE
Confidence            5899999999999999999987 56888877643210  01111111 233455677776532   45665    34568


Q ss_pred             ecCEEEEecccccCCCCCCCC-CceecCCCccccccccccCCCCCCCEEEEeccCCcccccHHHHHHHHHHHHHc
Q 037525           70 HADVILHCTGYKYHFPFLETN-GIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus        70 ~~D~vi~atG~~~~~~~l~~~-~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~ia~~l~  143 (182)
                      ++|.|++++|+.|+..++... +.+..++..  ..+.-  ..+ .|++|.+|+.........+..+++.++..+.
T Consensus       399 ~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~--~~~~~--~t~-v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~  468 (985)
T TIGR01372       399 EADALAVSGGWTPVVHLFSQRGGKLAWDAAI--AAFLP--GDA-VQGCILAGAANGLFGLAAALADGAAAGAAAA  468 (985)
T ss_pred             ECCEEEEcCCcCchhHHHHhcCCCeeecccc--Cceec--CCC-CCCeEEeeccCCccCHHHHHHHHHHHHHHHH
Confidence            999999999999998776432 112222211  11111  123 5999999987754444556666666665553

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.26  E-value=5.3e-06  Score=69.11  Aligned_cols=89  Identities=17%  Similarity=0.149  Sum_probs=61.8

Q ss_pred             CEEEEcCCccHHHHHHHHhcc---CCeEEEEeccCCCCCCCCCCC--------------------CCCeE-EcceeEEee
Q 037525            1 VIILVGSSASAVDICRDLAGV---AKEVHLVSRSVADGTYEKQPG--------------------FDNMW-LHSMIESAH   56 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~---a~~V~l~~r~~~~~~~~~~~~--------------------~~~i~-~~~~v~~~~   56 (182)
                      +|+|||||..|+..|..|.+.   ..+|+++.++....+...++.                    ..++. ....+.+++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id   80 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGID   80 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEe
Confidence            699999999999999999643   357999998764321111110                    01222 234566776


Q ss_pred             C-CCeEEEcCCcEEecCEEEEecccccCCCCCCC
Q 037525           57 D-NGAVVFRNGHTVHADVILHCTGYKYHFPFLET   89 (182)
Q Consensus        57 ~-~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~   89 (182)
                      . ++.|.+.+|+++++|.+|+|||..+..+.++.
T Consensus        81 ~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g  114 (364)
T TIGR03169        81 PDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEG  114 (364)
T ss_pred             cccCEEEECCCCcccccEEEEccCCCCCCCCCCc
Confidence            3 24688889988999999999999988665543

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.22  E-value=7.9e-06  Score=68.33  Aligned_cols=143  Identities=14%  Similarity=0.179  Sum_probs=94.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC--C-CC--------CCCCC-CeEEcceeEEeeCCCe------EE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT--Y-EK--------QPGFD-NMWLHSMIESAHDNGA------VV   62 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~--~-~~--------~~~~~-~i~~~~~v~~~~~~~~------v~   62 (182)
                      +|+|||+|..|+++|..+.+.+.+|+++...+....  . ..        +..++ ++..+..+.++..+..      +.
T Consensus       138 ~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~  217 (415)
T COG0446         138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVV  217 (415)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEE
Confidence            589999999999999999999999999998765421  1 11        11111 2334566667754321      46


Q ss_pred             EcCCcEEecCEEEEecccccCCCCCCCCC-ceecCCCccccccccccCCCCCCCEEEEeccCC-----------cccccH
Q 037525           63 FRNGHTVHADVILHCTGYKYHFPFLETNG-IVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-----------VIPFPL  130 (182)
Q Consensus        63 ~~dg~~~~~D~vi~atG~~~~~~~l~~~~-~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-----------~~~~~~  130 (182)
                      ..++..+++|.+++++|.+++..+..... +....++.+ .....+.... .+++|.+|+...           ...++.
T Consensus       218 ~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i-~v~~~~~~~~-~~~v~a~GD~~~~~~~~~~~~~~~~~~~~  295 (415)
T COG0446         218 GIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAV-LVDERGGTSK-DPDVYAAGDVAEIPAAETGKGGRIALWAI  295 (415)
T ss_pred             EeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCE-EEccccccCC-CCCEEeccceEeeecccCCceeeeechhh
Confidence            67788899999999999999844443321 122233333 3444444432 689999998541           123567


Q ss_pred             HHHHHHHHHHHHcCC
Q 037525          131 CEYQSKWIAGVLSGQ  145 (182)
Q Consensus       131 ~e~qa~~ia~~l~g~  145 (182)
                      +..|++.++..+.+.
T Consensus       296 a~~~~~i~~~~~~~~  310 (415)
T COG0446         296 AVAAGRIAAENIAGA  310 (415)
T ss_pred             HhhhhHHHHHHhccc
Confidence            788888888888764

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.21  E-value=1e-05  Score=69.13  Aligned_cols=88  Identities=11%  Similarity=0.029  Sum_probs=59.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCC--------C------------CCCCeE-EcceeEEeeC-C
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQ--------P------------GFDNMW-LHSMIESAHD-N   58 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~--------~------------~~~~i~-~~~~v~~~~~-~   58 (182)
                      +|+|||||..|+..|..|.+...+|+++.+++.+.+...+        .            ...++. +...|+.++. +
T Consensus        12 ~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~Id~~~   91 (424)
T PTZ00318         12 NVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYDVDFEE   91 (424)
T ss_pred             eEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEEEEcCC
Confidence            5999999999999999997655579999887653211000        0            001122 3456777763 3


Q ss_pred             CeEEE----------cCCcEEecCEEEEecccccCCCCCC
Q 037525           59 GAVVF----------RNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        59 ~~v~~----------~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      +.|.+          .+|.++++|.+|+|||..+..+-++
T Consensus        92 ~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ip  131 (424)
T PTZ00318         92 KRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIP  131 (424)
T ss_pred             CEEEEecccccccccCCceEecCCEEEECCCcccCCCCCC
Confidence            46777          4566789999999999998755444

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.19  E-value=1.2e-05  Score=68.00  Aligned_cols=83  Identities=24%  Similarity=0.238  Sum_probs=57.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC--eEEEEeccCCCCCCC-CCC---------------C-----CCCeEE--cceeEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSVADGTYE-KQP---------------G-----FDNMWL--HSMIESA   55 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~~~~~~~-~~~---------------~-----~~~i~~--~~~v~~~   55 (182)
                      +|+|||||+.|+..|..|++...  +|+++.+.....+.. .++               .     ..++..  ...|..+
T Consensus         5 ~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~~i   84 (396)
T PRK09754          5 TIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIKTL   84 (396)
T ss_pred             cEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEEEE
Confidence            69999999999999999998654  689987764321100 000               0     012332  3456666


Q ss_pred             eC-CCeEEEcCCcEEecCEEEEecccccC
Q 037525           56 HD-NGAVVFRNGHTVHADVILHCTGYKYH   83 (182)
Q Consensus        56 ~~-~~~v~~~dg~~~~~D~vi~atG~~~~   83 (182)
                      +. +..+++.+|+.+.+|.+|+|||..+.
T Consensus        85 d~~~~~v~~~~g~~~~yd~LViATGs~~~  113 (396)
T PRK09754         85 GRDTRELVLTNGESWHWDQLFIATGAAAR  113 (396)
T ss_pred             ECCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence            53 24678888988999999999999875

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.15  E-value=5.6e-05  Score=63.49  Aligned_cols=149  Identities=24%  Similarity=0.380  Sum_probs=83.6

Q ss_pred             EEEEcCCccHHHHHHHHhccC----CeEEEEeccCCCCCCCC------------------CCC-------------C---
Q 037525            2 IILVGSSASAVDICRDLAGVA----KEVHLVSRSVADGTYEK------------------QPG-------------F---   43 (182)
Q Consensus         2 V~VVG~G~sg~d~A~~l~~~a----~~V~l~~r~~~~~~~~~------------------~~~-------------~---   43 (182)
                      |+|||+|-||+|+-.+|....    .++.|+.|+..+...+.                  ++.             +   
T Consensus       190 V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI  269 (436)
T COG3486         190 VTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGI  269 (436)
T ss_pred             EEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCcccccc
Confidence            899999999999999998742    35888999876531110                  110             0   


Q ss_pred             ---------------------CCeEE--cceeEEeeC--CCeEEE--c---CC--cEEecCEEEEecccccCCC-CCCCC
Q 037525           44 ---------------------DNMWL--HSMIESAHD--NGAVVF--R---NG--HTVHADVILHCTGYKYHFP-FLETN   90 (182)
Q Consensus        44 ---------------------~~i~~--~~~v~~~~~--~~~v~~--~---dg--~~~~~D~vi~atG~~~~~~-~l~~~   90 (182)
                                           +++.+  ...|..++.  ++.+.+  .   +|  +++++|+||+||||+...| |++.-
T Consensus       270 ~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l  349 (436)
T COG3486         270 SFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGL  349 (436)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhH
Confidence                                 12222  234445542  222333  2   23  3568999999999997766 66542


Q ss_pred             C-ceecCCC---cccccccccc-CCCCCCCEEEEeccCC-----cccccHHHHHHHHHHHHHcCCCCCCCH
Q 037525           91 G-IVTMDDN---RVGPLYKHVF-PPVLAPWLSFVGLPWK-----VIPFPLCEYQSKWIAGVLSGQIVLPSQ  151 (182)
Q Consensus        91 ~-~~~~~~~---~~~~ly~~~~-~~~~~p~l~~iG~~~~-----~~~~~~~e~qa~~ia~~l~g~~~lP~~  151 (182)
                      . .+..++.   .+.+-|.-.. .+. .-.+|.-|....     .+.+.++-.-|..|++-+.|..+-|..
T Consensus       350 ~d~l~~d~~g~l~I~~dY~v~~~~~~-~~~ifvqn~e~htHGig~pdLsl~a~Raa~I~~~L~g~~~~~~~  419 (436)
T COG3486         350 ADRLQWDDDGRLVIGRDYRVLWDGPG-KGRIFVQNAELHTHGIGAPDLSLGAWRAAVILNSLLGREKYPVP  419 (436)
T ss_pred             HHhhcccccCCeEecCceeeecCCCC-cceEEEecccccccccCCccchHHHHHHHHHHHHHhCcCCCCCc
Confidence            1 1222211   1212232211 111 124666665431     134567777788888888888765543

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.14  E-value=1.7e-05  Score=67.90  Aligned_cols=88  Identities=15%  Similarity=0.208  Sum_probs=59.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC--eEEEEeccCCCCC-----C----CCCC--C-----------CCCe--EEcceeEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSVADGT-----Y----EKQP--G-----------FDNM--WLHSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~~~~~-----~----~~~~--~-----------~~~i--~~~~~v~~   54 (182)
                      +|+|||+|++|+..|..|++...  +|+++.+++.+.+     +    ....  .           ..++  .....+.+
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~   81 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK   81 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence            69999999999999999998643  7999998764310     0    0000  0           0122  33456777


Q ss_pred             eeC-CCeEEEcC---CcEEe--cCEEEEecccccCCCCCC
Q 037525           55 AHD-NGAVVFRN---GHTVH--ADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        55 ~~~-~~~v~~~d---g~~~~--~D~vi~atG~~~~~~~l~   88 (182)
                      ++. ++.+.+.+   |+.++  +|.+|+|||.++..+-++
T Consensus        82 id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~  121 (444)
T PRK09564         82 VDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIK  121 (444)
T ss_pred             EECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCC
Confidence            753 34677654   55666  999999999988755443

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.06  E-value=7.2e-05  Score=65.11  Aligned_cols=33  Identities=27%  Similarity=0.360  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhcc---------------------CCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGV---------------------AKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~---------------------a~~V~l~~r~~~   33 (182)
                      +|+|||+|+.|+|+|..|++.                     +++|++++|+.+
T Consensus       168 ~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~  221 (491)
T PLN02852        168 TAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGP  221 (491)
T ss_pred             EEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCCh
Confidence            589999999999999998763                     678999999875

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.06  E-value=3.2e-05  Score=64.89  Aligned_cols=87  Identities=16%  Similarity=0.247  Sum_probs=57.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccCCCCCCCC-C---------------CC------CCCeE--EcceeEE
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSVADGTYEK-Q---------------PG------FDNMW--LHSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~~~~~~~~-~---------------~~------~~~i~--~~~~v~~   54 (182)
                      +|+|||+|..|+.+|..|.+..  .+|+++.+.+...+... +               ..      ..++.  .+..|.+
T Consensus         4 ~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~   83 (377)
T PRK04965          4 GIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVTD   83 (377)
T ss_pred             CEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEEE
Confidence            5899999999999999998743  36888887653211000 0               00      01233  2456777


Q ss_pred             eeCCC-eEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           55 AHDNG-AVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        55 ~~~~~-~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      ++.+. .+. .+|..+++|.+|+|||..+..+-++
T Consensus        84 id~~~~~v~-~~~~~~~yd~LVlATG~~~~~p~i~  117 (377)
T PRK04965         84 IDAEAQVVK-SQGNQWQYDKLVLATGASAFVPPIP  117 (377)
T ss_pred             EECCCCEEE-ECCeEEeCCEEEECCCCCCCCCCCC
Confidence            76433 344 4677889999999999987655444

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.05  E-value=2.8e-05  Score=65.85  Aligned_cols=88  Identities=14%  Similarity=0.121  Sum_probs=64.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccCCCCCCCCCC---------------------CCCCeEE-cceeEEee
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSVADGTYEKQP---------------------GFDNMWL-HSMIESAH   56 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~~~~~~~~~~---------------------~~~~i~~-~~~v~~~~   56 (182)
                      +|+|||||..|+..|..|.+.-  .+|+|+.|+..+.+...++                     +..++.. ...|+.|+
T Consensus         5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID   84 (405)
T COG1252           5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVTDID   84 (405)
T ss_pred             eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEEEEc
Confidence            6999999999999999999964  6799999987543211110                     0112433 24677776


Q ss_pred             C-CCeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           57 D-NGAVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        57 ~-~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      . .+.|+++++..+++|.+|+|+|..+++.-.+
T Consensus        85 ~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~  117 (405)
T COG1252          85 RDAKKVTLADLGEISYDYLVVALGSETNYFGIP  117 (405)
T ss_pred             ccCCEEEeCCCccccccEEEEecCCcCCcCCCC
Confidence            3 3579999977899999999999999854443

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.04  E-value=3e-05  Score=66.47  Aligned_cols=87  Identities=13%  Similarity=0.105  Sum_probs=58.1

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCC---------CC-------CC-------CCCCe--EEcceeE
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTY---------EK-------QP-------GFDNM--WLHSMIE   53 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~---------~~-------~~-------~~~~i--~~~~~v~   53 (182)
                      +|+|||||..|+..|..|.+.  ..+|+|+.+.+.+.+.         +.       ++       ...++  .....|.
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V~   82 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEVI   82 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEEE
Confidence            699999999999999999875  3479999987543211         00       00       00122  2345677


Q ss_pred             EeeCC-CeEEEcCC---c--EEecCEEEEecccccCCCCC
Q 037525           54 SAHDN-GAVVFRNG---H--TVHADVILHCTGYKYHFPFL   87 (182)
Q Consensus        54 ~~~~~-~~v~~~dg---~--~~~~D~vi~atG~~~~~~~l   87 (182)
                      +++.+ +.|.+.++   +  ++++|.+|+|||.++..+-+
T Consensus        83 ~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~  122 (438)
T PRK13512         83 AINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGF  122 (438)
T ss_pred             EEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCC
Confidence            77643 46777653   2  25789999999999875443

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.92  E-value=0.0001  Score=63.11  Aligned_cols=32  Identities=28%  Similarity=0.403  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|+.|+..|..+++...+|+++.+++
T Consensus         5 dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~   36 (438)
T PRK07251          5 DLIVIGFGKAGKTLAAKLASAGKKVALVEESK   36 (438)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence            58999999999999999999999999999864

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.92  E-value=0.0001  Score=64.62  Aligned_cols=87  Identities=14%  Similarity=0.208  Sum_probs=57.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC--CCC-CC--CC---CCC----------------C-CCeEEcceeEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV--ADG-TY--EK---QPG----------------F-DNMWLHSMIESA   55 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~--~~~-~~--~~---~~~----------------~-~~i~~~~~v~~~   55 (182)
                      +|+|||||+.|+..|..+++.+.+|+++..+.  .+. ..  ..   .+.                + -++.....|.++
T Consensus       214 dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I  293 (515)
T TIGR03140       214 DVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAKKI  293 (515)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEEEE
Confidence            58999999999999999999999999986421  110 00  00   000                0 022234556666


Q ss_pred             eCCC---eEEEcCCcEEecCEEEEecccccCCCCC
Q 037525           56 HDNG---AVVFRNGHTVHADVILHCTGYKYHFPFL   87 (182)
Q Consensus        56 ~~~~---~v~~~dg~~~~~D~vi~atG~~~~~~~l   87 (182)
                      ..+.   .+.+.+|+.+.+|.+|+|||..+..+-+
T Consensus       294 ~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~i  328 (515)
T TIGR03140       294 ETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGV  328 (515)
T ss_pred             EecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCC
Confidence            4321   4566678889999999999998654333

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.90  E-value=9.4e-05  Score=64.79  Aligned_cols=85  Identities=15%  Similarity=0.163  Sum_probs=56.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC--CCC-CC--CCCCC-------------------CC-CeEEcceeEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV--ADG-TY--EKQPG-------------------FD-NMWLHSMIESA   55 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~--~~~-~~--~~~~~-------------------~~-~i~~~~~v~~~   55 (182)
                      +|+|||||++|+..|.++++.+.+|.++.++.  .+. ..  ..++.                   ++ .+.....+..+
T Consensus       213 dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I  292 (517)
T PRK15317        213 DVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKL  292 (517)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence            58999999999999999999999999986531  110 00  00000                   00 12223456666


Q ss_pred             eCC---CeEEEcCCcEEecCEEEEecccccCCC
Q 037525           56 HDN---GAVVFRNGHTVHADVILHCTGYKYHFP   85 (182)
Q Consensus        56 ~~~---~~v~~~dg~~~~~D~vi~atG~~~~~~   85 (182)
                      ..+   ..|.+.+|+.+.+|.||+|||..+..+
T Consensus       293 ~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~  325 (517)
T PRK15317        293 EPAAGLIEVELANGAVLKAKTVILATGARWRNM  325 (517)
T ss_pred             EecCCeEEEEECCCCEEEcCEEEECCCCCcCCC
Confidence            532   145667788889999999999977543

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.87  E-value=8.6e-05  Score=68.21  Aligned_cols=87  Identities=13%  Similarity=0.153  Sum_probs=60.3

Q ss_pred             EEEEcCCccHHHHHHHHhccC---CeEEEEeccCCCCCC-----CCCCC----------------CCCeE--EcceeEEe
Q 037525            2 IILVGSSASAVDICRDLAGVA---KEVHLVSRSVADGTY-----EKQPG----------------FDNMW--LHSMIESA   55 (182)
Q Consensus         2 V~VVG~G~sg~d~A~~l~~~a---~~V~l~~r~~~~~~~-----~~~~~----------------~~~i~--~~~~v~~~   55 (182)
                      |+|||+|..|+..|..|.+..   .+|+++.+.+...+.     ..+.+                ..++.  ....|+++
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            689999999999999998754   379999877543210     00000                01333  34567777


Q ss_pred             eCC-CeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           56 HDN-GAVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        56 ~~~-~~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      +.+ ..|++.+|+++++|.+|+|||..+..+.++
T Consensus        81 d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ip  114 (785)
T TIGR02374        81 DTDQKQVITDAGRTLSYDKLILATGSYPFILPIP  114 (785)
T ss_pred             ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCC
Confidence            643 468888898899999999999987655444

>PRK06116 glutathione reductase; Validated

Probab=97.84  E-value=0.00014  Score=62.46  Aligned_cols=31  Identities=16%  Similarity=0.292  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+.|+..|..+++.+.+|.++.+.
T Consensus         6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~   36 (450)
T PRK06116          6 DLIVIGGGSGGIASANRAAMYGAKVALIEAK   36 (450)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4899999999999999999999999999975

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.80  E-value=0.0001  Score=62.26  Aligned_cols=29  Identities=21%  Similarity=0.354  Sum_probs=25.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVS   29 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~   29 (182)
                      +|+|||||.+|+|.|..+++.+.+|.|+.
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit   29 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLIT   29 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence            58999999999999999999999999994

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.80  E-value=0.00016  Score=66.96  Aligned_cols=88  Identities=13%  Similarity=0.107  Sum_probs=59.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccC----CeEEEEeccCCCCCCC-----CCCC---------------CCCeE--EcceeEE
Q 037525            1 VIILVGSSASAVDICRDLAGVA----KEVHLVSRSVADGTYE-----KQPG---------------FDNMW--LHSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a----~~V~l~~r~~~~~~~~-----~~~~---------------~~~i~--~~~~v~~   54 (182)
                      +|+|||+|..|+..|..|.+..    .+|+++.+.+...+..     .+..               ..++.  ....+.+
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~~   84 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAIT   84 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEEE
Confidence            6999999999999999997642    4799998765432100     0000               01333  2345666


Q ss_pred             eeCC-CeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           55 AHDN-GAVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        55 ~~~~-~~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      ++.+ ..|.+.+|+.+.+|.+|+|||..+..+.++
T Consensus        85 Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ip  119 (847)
T PRK14989         85 INRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK  119 (847)
T ss_pred             EeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCC
Confidence            7543 356777888899999999999987655444

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.78  E-value=0.00022  Score=59.98  Aligned_cols=81  Identities=17%  Similarity=0.294  Sum_probs=57.3

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCC------CC----C-----CC---------------CC------
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADG------TY----E-----KQ---------------PG------   42 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~------~~----~-----~~---------------~~------   42 (182)
                      +|+|||+|.+|..+|..|++.  ..+|.++.+.+...      ..    .     .+               +.      
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            589999999999999999986  77899998865210      00    0     00               00      


Q ss_pred             --C-----------------CCeEEcceeEEeeCCCeEEEcCCcEEecCEEEEeccccc
Q 037525           43 --F-----------------DNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTGYKY   82 (182)
Q Consensus        43 --~-----------------~~i~~~~~v~~~~~~~~v~~~dg~~~~~D~vi~atG~~~   82 (182)
                        +                 ..+.....|.++.+ +++++.||+++.+|.||.|.|..+
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~-~~v~l~dg~~~~A~~VI~A~G~~s  138 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA-DGVDLAPGTRINARSVIDCRGFKP  138 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC-CEEEECCCCEEEeeEEEECCCCCC
Confidence              0                 01333456666655 368888999999999999999664

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.76  E-value=0.00063  Score=58.62  Aligned_cols=32  Identities=9%  Similarity=0.177  Sum_probs=28.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCe-EEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKE-VHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~-V~l~~r~~   32 (182)
                      +|+|||+|.||+=.|..|.+.+.. +.++++++
T Consensus        10 ~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~   42 (443)
T COG2072          10 DVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD   42 (443)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence            599999999999999999998766 88888875

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.75  E-value=0.00016  Score=62.00  Aligned_cols=32  Identities=19%  Similarity=0.272  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||+.|+..|..+++...+|.++.+.+
T Consensus         5 DvvVIGgGpaGl~aA~~la~~g~~V~lie~~~   36 (441)
T PRK08010          5 QAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN   36 (441)
T ss_pred             CEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence            58999999999999999999999999999864

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.75  E-value=0.00026  Score=61.03  Aligned_cols=31  Identities=16%  Similarity=0.264  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+.|...|..+++.+++|.++.+.
T Consensus         4 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~~   34 (450)
T TIGR01421         4 DYLVIGGGSGGIASARRAAEHGAKALLVEAK   34 (450)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence            5899999999999999999999999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.75  E-value=0.00025  Score=60.96  Aligned_cols=31  Identities=16%  Similarity=0.290  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+.|+..|..+++.+++|.|+.+.
T Consensus         4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~   34 (446)
T TIGR01424         4 DLFVIGAGSGGVRAARLAANHGAKVAIAEEP   34 (446)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            5899999999999999999999999999874

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK10262 thioredoxin reductase; Provisional

Probab=97.73  E-value=0.0003  Score=57.69  Aligned_cols=30  Identities=13%  Similarity=0.189  Sum_probs=27.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r   30 (182)
                      +|+|||+|++|+..|..+++...+|.++..
T Consensus         8 ~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~   37 (321)
T PRK10262          8 KLLILGSGPAGYTAAVYAARANLQPVLITG   37 (321)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCeEEEEe
Confidence            589999999999999999998888888864

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.67  E-value=0.0002  Score=60.16  Aligned_cols=33  Identities=15%  Similarity=0.303  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|+=.|..+++.+.+|.++.+.+.
T Consensus         5 dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k   37 (408)
T COG2081           5 DVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPK   37 (408)
T ss_pred             eEEEECCCHHHHHHHHHHhhcCCEEEEEecCcc
Confidence            589999999999999999999999999998764

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.66  E-value=0.00036  Score=58.47  Aligned_cols=142  Identities=17%  Similarity=0.160  Sum_probs=90.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCC--------CCCCCC--CeEEcceeEEeeC--CCe--EEEc-
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYE--------KQPGFD--NMWLHSMIESAHD--NGA--VVFR-   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~--------~~~~~~--~i~~~~~v~~~~~--~~~--v~~~-   64 (182)
                      +.+|||+|..|+|++.-..+.+.+||++.--+..- .++        ++....  ++.+.+++...+.  ++.  |.+. 
T Consensus       213 ~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~  292 (506)
T KOG1335|consen  213 KLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVEN  292 (506)
T ss_pred             eEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEe
Confidence            46899999999999999999999999997544321 011        000011  3445667766653  223  3343 


Q ss_pred             --CCc--EEecCEEEEecccccCCCCCCCC-CceecC-CCccccccccccCCCCCCCEEEEeccCCcc-cccHHHHHHHH
Q 037525           65 --NGH--TVHADVILHCTGYKYHFPFLETN-GIVTMD-DNRVGPLYKHVFPPVLAPWLSFVGLPWKVI-PFPLCEYQSKW  137 (182)
Q Consensus        65 --dg~--~~~~D~vi~atG~~~~~~~l~~~-~~~~~~-~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~  137 (182)
                        +|+  ++++|++.+|+|-+|=+.=|.-+ .++..+ .+++ +. ..-|... .|++|.+|+...++ ...-+|.|+..
T Consensus       293 ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv-~v-~~~f~t~-vP~i~~IGDv~~gpMLAhkAeeegI~  369 (506)
T KOG1335|consen  293 AKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRV-IV-NTRFQTK-VPHIYAIGDVTLGPMLAHKAEEEGIA  369 (506)
T ss_pred             cCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccce-ec-ccccccc-CCceEEecccCCcchhhhhhhhhchh
Confidence              343  47999999999987644333221 122222 1222 22 2224445 79999999987544 45688999999


Q ss_pred             HHHHHcCC
Q 037525          138 IAGVLSGQ  145 (182)
Q Consensus       138 ia~~l~g~  145 (182)
                      +...++|.
T Consensus       370 ~VE~i~g~  377 (506)
T KOG1335|consen  370 AVEGIAGG  377 (506)
T ss_pred             heeeeccc
Confidence            99999877

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.66  E-value=0.00026  Score=53.77  Aligned_cols=31  Identities=13%  Similarity=0.307  Sum_probs=24.4

Q ss_pred             EEEcCCccHHHHHHHHhccCCe-EEEEeccCC
Q 037525            3 ILVGSSASAVDICRDLAGVAKE-VHLVSRSVA   33 (182)
Q Consensus         3 ~VVG~G~sg~d~A~~l~~~a~~-V~l~~r~~~   33 (182)
                      +|||+|++|+-.|..|.+...+ |.+++|++.
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~   32 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDR   32 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSS
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            6999999999999999998877 999998743

...

>PRK14694 putative mercuric reductase; Provisional

Probab=97.61  E-value=0.00065  Score=58.77  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|.-.|..|++.+.+|.++.+..
T Consensus         8 dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~   39 (468)
T PRK14694          8 HIAVIGSGGSAMAAALKATERGARVTLIERGT   39 (468)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence            58999999999999999999999999999753

>PRK06370 mercuric reductase; Validated

Probab=97.61  E-value=0.0003  Score=60.66  Aligned_cols=31  Identities=23%  Similarity=0.426  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+.|...|..+++.+++|.++.+.
T Consensus         7 DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   37 (463)
T PRK06370          7 DAIVIGAGQAGPPLAARAAGLGMKVALIERG   37 (463)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            5899999999999999999999999999975

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.00063  Score=55.83  Aligned_cols=87  Identities=17%  Similarity=0.225  Sum_probs=54.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCe-EEEEeccCCC---CC---CCCCCCCC-------------------CeEE-cceeE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKE-VHLVSRSVAD---GT---YEKQPGFD-------------------NMWL-HSMIE   53 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~-V~l~~r~~~~---~~---~~~~~~~~-------------------~i~~-~~~v~   53 (182)
                      +|+|||+|+.|+-.|..+++...+ +.+.....+-   ..   .+..|+.+                   .+.. ...+.
T Consensus         5 DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~~v~   84 (305)
T COG0492           5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVEDEVE   84 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEEEEEE
Confidence            589999999999999999998866 5555443211   00   11112111                   1111 23455


Q ss_pred             EeeCCC---eEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           54 SAHDNG---AVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        54 ~~~~~~---~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      ++...+   .|...+|+ +.++.||+|||..+..+-++
T Consensus        85 ~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~  121 (305)
T COG0492          85 KVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVP  121 (305)
T ss_pred             EEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCC
Confidence            555443   45556776 89999999999988755444

>PTZ00058 glutathione reductase; Provisional

Probab=97.56  E-value=0.00098  Score=59.08  Aligned_cols=31  Identities=23%  Similarity=0.382  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+.|.-.|..+++.+++|.++.+.
T Consensus        50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         50 DLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            5899999999999999999999999999975

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.54  E-value=0.00074  Score=58.14  Aligned_cols=32  Identities=19%  Similarity=0.320  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+..|..+++.+++|.++.+++
T Consensus         7 DvvVIGaGpaG~~aA~~la~~G~~v~liE~~~   38 (461)
T PRK05249          7 DLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR   38 (461)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence            58999999999999999999999999999853

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.54  E-value=0.00026  Score=66.18  Aligned_cols=77  Identities=19%  Similarity=0.080  Sum_probs=50.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC---CCCCCCCC----------------CeEEcceeEEeeCCCeE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT---YEKQPGFD----------------NMWLHSMIESAHDNGAV   61 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~---~~~~~~~~----------------~i~~~~~v~~~~~~~~v   61 (182)
                      +|+|||+|++|+-.|..|++.+.+|+++.+.+..-.   +. +|.+.                .+.....+ .+ + ..+
T Consensus       308 kVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG-IP~~rlp~~vi~~~i~~l~~~Gv~f~~n~-~v-G-~di  383 (944)
T PRK12779        308 PIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG-IPEFRLPNQLIDDVVEKIKLLGGRFVKNF-VV-G-KTA  383 (944)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc-CCCCcChHHHHHHHHHHHHhhcCeEEEeE-Ee-c-cEE
Confidence            699999999999999999999999999998653211   11 22211                01111100 11 1 245


Q ss_pred             EEcCCcEEecCEEEEecccc
Q 037525           62 VFRNGHTVHADVILHCTGYK   81 (182)
Q Consensus        62 ~~~dg~~~~~D~vi~atG~~   81 (182)
                      ++++.....+|+||+|||..
T Consensus       384 t~~~l~~~~yDAV~LAtGA~  403 (944)
T PRK12779        384 TLEDLKAAGFWKIFVGTGAG  403 (944)
T ss_pred             eHHHhccccCCEEEEeCCCC
Confidence            55555455799999999985

>PLN02463 lycopene beta cyclase

Probab=97.54  E-value=0.00047  Score=59.46  Aligned_cols=32  Identities=13%  Similarity=0.309  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||++|.-+|..|++.+.+|.++.+.+
T Consensus        30 DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~   61 (447)
T PLN02463         30 DLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP   61 (447)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence            58999999999999999999888999998754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.54  E-value=0.00095  Score=57.80  Aligned_cols=32  Identities=19%  Similarity=0.330  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|+||+-.|..|.+.+.+|+++.+++
T Consensus        12 ~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~   43 (461)
T PLN02172         12 HVAVIGAGAAGLVAARELRREGHTVVVFEREK   43 (461)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence            69999999999999999999888999999864

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=97.54  E-value=0.00012  Score=59.90  Aligned_cols=88  Identities=14%  Similarity=0.303  Sum_probs=63.7

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCC-C-----C----C-----------CCCCCCeEEcceeEEeeC
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGT-Y-----E----K-----------QPGFDNMWLHSMIESAHD   57 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~-~-----~----~-----------~~~~~~i~~~~~v~~~~~   57 (182)
                      +|||||||.-|+-+|..+.+.  ..+|-++...+..-. +     +    .           +|. +..+++.+|+++++
T Consensus        41 kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~-~a~wi~ekv~~f~P  119 (446)
T KOG3851|consen   41 KVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPK-GATWIKEKVKEFNP  119 (446)
T ss_pred             EEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccC-CcHHHHHHHHhcCC
Confidence            489999999999999999983  346777776543210 0     0    0           111 12345567788875


Q ss_pred             C-CeEEEcCCcEEecCEEEEecccccCCCCCCC
Q 037525           58 N-GAVVFRNGHTVHADVILHCTGYKYHFPFLET   89 (182)
Q Consensus        58 ~-~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~   89 (182)
                      + +.|.+.+|++|..|..|+|+|...++.-+..
T Consensus       120 ~~N~v~t~gg~eIsYdylviA~Giql~y~~IkG  152 (446)
T KOG3851|consen  120 DKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKG  152 (446)
T ss_pred             CcCeEEccCCcEEeeeeEeeeeeceeccchhcC
Confidence            3 4899999999999999999999998876654

>PRK06753 hypothetical protein; Provisional

Probab=97.53  E-value=0.00069  Score=56.44  Aligned_cols=33  Identities=15%  Similarity=0.280  Sum_probs=30.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|.=.|..|++.+.+|++++|++.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            599999999999999999999999999998764

>PRK06847 hypothetical protein; Provisional

Probab=97.51  E-value=0.00063  Score=56.66  Aligned_cols=33  Identities=18%  Similarity=0.262  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|+-.|..|++.+-+|+++.+.+.
T Consensus         6 ~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            599999999999999999998889999987653

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.50  E-value=0.00076  Score=58.47  Aligned_cols=32  Identities=16%  Similarity=0.220  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|+.|...|..+++.+.+|.++.+++
T Consensus         6 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~   37 (471)
T PRK06467          6 QVVVLGAGPAGYSAAFRAADLGLETVCVERYS   37 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            58999999999999999999999999999864

>PRK07236 hypothetical protein; Provisional

Probab=97.46  E-value=0.001  Score=55.91  Aligned_cols=32  Identities=19%  Similarity=0.191  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||++|+-+|..|++.+-+|+++.|.+
T Consensus         8 ~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (386)
T PRK07236          8 RAVVIGGSLGGLFAALLLRRAGWDVDVFERSP   39 (386)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            59999999999999999999999999999875

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=97.46  E-value=0.00028  Score=59.79  Aligned_cols=94  Identities=17%  Similarity=0.268  Sum_probs=60.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC----eEEEEeccCCCCCCCCCCCC-----------C--CeEEcceeEEee---CCCe
Q 037525            1 VIILVGSSASAVDICRDLAGVAK----EVHLVSRSVADGTYEKQPGF-----------D--NMWLHSMIESAH---DNGA   60 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~----~V~l~~r~~~~~~~~~~~~~-----------~--~i~~~~~v~~~~---~~~~   60 (182)
                      .|.|||+|..|-|+|+.|.+...    +|+-+.... ..+...+|.|           .  .+..+..|+++.   .+-.
T Consensus       349 siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek-~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~  427 (659)
T KOG1346|consen  349 SITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK-YNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLV  427 (659)
T ss_pred             eEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc-CChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceE
Confidence            37899999999999999998543    566554321 1112223332           1  122233444432   1224


Q ss_pred             EEEcCCcEEecCEEEEecccccCCCCCCCCCceecC
Q 037525           61 VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMD   96 (182)
Q Consensus        61 v~~~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~   96 (182)
                      +.+.||+++..|.||.|+|-.|+.++... .+++++
T Consensus       428 lkL~dG~~l~tD~vVvavG~ePN~ela~~-sgLeiD  462 (659)
T KOG1346|consen  428 LKLSDGSELRTDLVVVAVGEEPNSELAEA-SGLEID  462 (659)
T ss_pred             EEecCCCeeeeeeEEEEecCCCchhhccc-ccceee
Confidence            67789999999999999999999887665 345543

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.45  E-value=0.001  Score=55.99  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHH--hccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDL--AGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l--~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|.-+|..|  ++...+|.++++.+.
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~   35 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK   35 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            589999999999999999  777889999987643

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.43  E-value=0.00048  Score=64.47  Aligned_cols=33  Identities=15%  Similarity=0.248  Sum_probs=30.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|..|++.+.+|+++.+.+.
T Consensus       541 kVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~  573 (1019)
T PRK09853        541 KVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN  573 (1019)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence            699999999999999999999999999997654

>TIGR02053 MerA mercuric reductase

Probab=97.42  E-value=0.0011  Score=57.13  Aligned_cols=31  Identities=26%  Similarity=0.412  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+.|...|..+++..++|.++.+.
T Consensus         2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~   32 (463)
T TIGR02053         2 DLVIIGSGAAAFAAAIKAAELGASVAMVERG   32 (463)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5899999999999999999999999999975

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.41  E-value=0.00019  Score=62.57  Aligned_cols=33  Identities=18%  Similarity=0.247  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhc--cCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAG--VAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~--~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|..|++  ...+|+++.+.+.
T Consensus        28 ~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~   62 (491)
T PLN02852         28 HVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT   62 (491)
T ss_pred             cEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence            69999999999999999986  5778999998764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.40  E-value=0.0016  Score=57.71  Aligned_cols=87  Identities=11%  Similarity=0.119  Sum_probs=54.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC---CCC---CCCCCCC------------------CeE-EcceeEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD---GTY---EKQPGFD------------------NMW-LHSMIESA   55 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~---~~~---~~~~~~~------------------~i~-~~~~v~~~   55 (182)
                      +|+|||||++|+..|..+++...+|+++.+...-   ...   ...|...                  ++. ....+..+
T Consensus         6 DVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~V~~i   85 (555)
T TIGR03143         6 DLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAEVLDV   85 (555)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccEEEEE
Confidence            5899999999999999999988899999875321   000   0011100                  122 12344455


Q ss_pred             eCCC---eEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           56 HDNG---AVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        56 ~~~~---~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      ..++   .+...+| .+.+|.||+|||..+..+-++
T Consensus        86 ~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ip  120 (555)
T TIGR03143        86 DFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFP  120 (555)
T ss_pred             EecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCC
Confidence            4221   2444445 578899999999987654443

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PLN02546 glutathione reductase

Probab=97.37  E-value=0.0013  Score=58.35  Aligned_cols=30  Identities=10%  Similarity=0.171  Sum_probs=28.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r   30 (182)
                      +|+|||+|+-|...|..+++.+++|.++.+
T Consensus        81 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         81 DLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            489999999999999999999999999995

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.36  E-value=0.00071  Score=57.72  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=25.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||+||+=.|..+++.+.+|.+++|.+.
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~   34 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKR   34 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence            699999999999999999999999999999764

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK07588 hypothetical protein; Provisional

Probab=97.33  E-value=0.0015  Score=54.85  Aligned_cols=33  Identities=15%  Similarity=0.214  Sum_probs=30.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|+=.|..|++.+.+|+++++.+.
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            699999999999999999999999999997654

>PRK05868 hypothetical protein; Validated

Probab=97.29  E-value=0.0021  Score=53.99  Aligned_cols=33  Identities=18%  Similarity=0.242  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|.-.|..|++.+.+|+++++.+.
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~   35 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG   35 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence            599999999999999999999889999998754

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.29  E-value=0.0019  Score=55.84  Aligned_cols=31  Identities=10%  Similarity=0.207  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+.|...|..+++.+++|.++.++
T Consensus         5 DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~   35 (466)
T PRK06115          5 DVVIIGGGPGGYNAAIRAGQLGLKVACVEGR   35 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            5899999999999999999999999999964

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.28  E-value=0.0026  Score=54.71  Aligned_cols=30  Identities=17%  Similarity=0.272  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r   30 (182)
                      +|+|||+|+.|+..|..|++.+.+|.++.+
T Consensus         3 DvvVIG~G~aGl~aA~~la~~G~~v~lie~   32 (461)
T TIGR01350         3 DVVVIGGGPGGYVAAIRAAQLGLKVALVEK   32 (461)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            589999999999999999999999999998

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.28  E-value=0.00093  Score=58.85  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=27.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      ||+|||+|+||+-.|..|.+.+-++++.++++.
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~   35 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD   35 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence            699999999999999999998889999998764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PLN02507 glutathione reductase

Probab=97.26  E-value=0.002  Score=56.35  Aligned_cols=30  Identities=17%  Similarity=0.266  Sum_probs=28.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r   30 (182)
                      +|+|||+|+.|.-.|..+++.+++|.++.+
T Consensus        27 DvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         27 DLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            489999999999999999999999999996

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.24  E-value=0.0035  Score=54.24  Aligned_cols=31  Identities=10%  Similarity=0.218  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+.|...|..+++.+++|.++.+.
T Consensus         6 dvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   36 (472)
T PRK05976          6 DLVIIGGGPGGYVAAIRAGQLGLKTALVEKG   36 (472)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            5899999999999999999999999999975

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.20  E-value=0.0026  Score=53.92  Aligned_cols=33  Identities=18%  Similarity=0.353  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~~   33 (182)
                      +|+|||||.+|+=.|..|++.+. +|++++|++.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~   35 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA   35 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence            69999999999999999999874 8999998754

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.19  E-value=0.0027  Score=54.72  Aligned_cols=32  Identities=16%  Similarity=0.243  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|+.|+..|..+++.+++|.++.+..
T Consensus         6 DvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~   37 (462)
T PRK06416          6 DVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK   37 (462)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            58999999999999999999999999999754

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.0017  Score=53.84  Aligned_cols=141  Identities=18%  Similarity=0.223  Sum_probs=85.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC---------CCCCC-CeEE---cceeEEeeCCC-eEEEc--
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---------QPGFD-NMWL---HSMIESAHDNG-AVVFR--   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~---------~~~~~-~i~~---~~~v~~~~~~~-~v~~~--   64 (182)
                      +-+|||+|+.|+|.|..|+..+-.|++..|+-..+.++.         +..++ ++..   ..+|+.+.++. .|...  
T Consensus       200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t  279 (503)
T KOG4716|consen  200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNT  279 (503)
T ss_pred             ceEEEccceeeeehhhhHhhcCCCcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecc
Confidence            468999999999999999999999999999866544331         00011 1221   23455554422 12222  


Q ss_pred             -CCc--EEecCEEEEecccccCCCCCCCC-CceecC--CCccccccccccCCCCCCCEEEEeccCC--cccccHHHHHHH
Q 037525           65 -NGH--TVHADVILHCTGYKYHFPFLETN-GIVTMD--DNRVGPLYKHVFPPVLAPWLSFVGLPWK--VIPFPLCEYQSK  136 (182)
Q Consensus        65 -dg~--~~~~D~vi~atG~~~~~~~l~~~-~~~~~~--~~~~~~ly~~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~  136 (182)
                       .++  +.+.|.|+||+|-.+.++-+.-+ .+++.+  .+.+ +... .-..+ .|.+|.+|+.-.  +-.-|.+-+..|
T Consensus       280 ~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI-~v~~-~e~t~-vp~vyAvGDIl~~kpELTPvAIqsGr  356 (503)
T KOG4716|consen  280 NTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKI-PVDD-EEATN-VPYVYAVGDILEDKPELTPVAIQSGR  356 (503)
T ss_pred             cccccccchhhhhhhhhccccchhhcCCCccceeecccCCcc-ccCh-HHhcC-CCceEEecceecCCcccchhhhhhch
Confidence             122  23689999999998876654322 234432  2233 2211 11223 799999999863  223567777778


Q ss_pred             HHHHHHcC
Q 037525          137 WIAGVLSG  144 (182)
Q Consensus       137 ~ia~~l~g  144 (182)
                      .+|+-|-+
T Consensus       357 lLa~Rlf~  364 (503)
T KOG4716|consen  357 LLARRLFA  364 (503)
T ss_pred             HHHHHHhc
Confidence            88876643

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.14  E-value=0.00084  Score=57.90  Aligned_cols=33  Identities=12%  Similarity=0.246  Sum_probs=30.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|..|++...+|+++.+.+.
T Consensus       142 ~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~  174 (457)
T PRK11749        142 KVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK  174 (457)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence            599999999999999999999899999988754

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.08  E-value=0.0068  Score=52.30  Aligned_cols=32  Identities=16%  Similarity=0.248  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|+.|...|..+++.+++|.++.|..
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~   33 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD   33 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence            68999999999999999999999999999863

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.08  E-value=0.0064  Score=53.18  Aligned_cols=30  Identities=17%  Similarity=0.376  Sum_probs=28.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r   30 (182)
                      +|+|||+|+.|...|..+++..++|.++.+
T Consensus         7 DviVIG~GpaG~~AA~~aa~~G~~V~lie~   36 (499)
T PTZ00052          7 DLVVIGGGSGGMAAAKEAAAHGKKVALFDY   36 (499)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            589999999999999999999999999996

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.08  E-value=0.0014  Score=56.66  Aligned_cols=32  Identities=16%  Similarity=0.321  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|+.|++.|..+++...+|.++.++.
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            58999999999999999999999999999754

>PRK13748 putative mercuric reductase; Provisional

Probab=97.07  E-value=0.0068  Score=53.54  Aligned_cols=31  Identities=19%  Similarity=0.327  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+.|...|..+++.+++|.++.++
T Consensus       100 DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~  130 (561)
T PRK13748        100 HVAVIGSGGAAMAAALKAVEQGARVTLIERG  130 (561)
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            5899999999999999999999999999976

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.07  E-value=0.0067  Score=52.86  Aligned_cols=30  Identities=17%  Similarity=0.351  Sum_probs=28.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r   30 (182)
                      +|+|||+|+.|...|..+++.+++|.++.+
T Consensus         4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~   33 (484)
T TIGR01438         4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDF   33 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            589999999999999999999999999986

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.05  E-value=0.00099  Score=61.02  Aligned_cols=32  Identities=19%  Similarity=0.304  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+..|..|++.+.+|+++.+.+
T Consensus       433 ~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~  464 (752)
T PRK12778        433 KVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH  464 (752)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            58999999999999999999999999998754

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.05  E-value=0.01  Score=51.36  Aligned_cols=32  Identities=16%  Similarity=0.254  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +++|||+|+.|.-.|..+++.+.+|.++.+++
T Consensus         6 DvvVIG~GpaG~~aA~raa~~G~kvalvE~~~   37 (454)
T COG1249           6 DVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE   37 (454)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            58999999999999999999988899999875

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.04  E-value=0.0061  Score=52.69  Aligned_cols=31  Identities=10%  Similarity=0.198  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+.|...|..+++..++|.++.++
T Consensus         6 DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          6 DVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            5899999999999999999999999999975

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.04  E-value=0.0031  Score=54.29  Aligned_cols=31  Identities=23%  Similarity=0.420  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+.|...|..|++..++|.++.++
T Consensus         5 DvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   35 (460)
T PRK06292          5 DVIVIGAGPAGYVAARRAAKLGKKVALIEKG   35 (460)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5899999999999999999999999999873

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.02  E-value=0.0089  Score=51.62  Aligned_cols=33  Identities=18%  Similarity=0.345  Sum_probs=30.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|+||+-.|..|.+.+.+|++..|.+.
T Consensus         8 ~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~   40 (448)
T KOG1399|consen    8 DVAVIGAGPAGLAAARELLREGHEVVVFERTDD   40 (448)
T ss_pred             ceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence            589999999999999999999999999999764

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.02  E-value=0.0015  Score=61.43  Aligned_cols=33  Identities=12%  Similarity=0.209  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|+..|..|++.+.+|+++.+++.
T Consensus       539 kVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~  571 (1012)
T TIGR03315       539 KVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK  571 (1012)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            599999999999999999999999999997653

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.02  E-value=0.0064  Score=53.03  Aligned_cols=30  Identities=13%  Similarity=0.350  Sum_probs=28.1

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r   30 (182)
                      +|+|||+|+-|...|..+++. +++|.++.+
T Consensus         5 DviVIG~G~~G~~aA~~aa~~~g~~V~lie~   35 (486)
T TIGR01423         5 DLVVIGAGSGGLEAGWNAATLYKKRVAVIDV   35 (486)
T ss_pred             CEEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence            589999999999999999996 899999997

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK14727 putative mercuric reductase; Provisional

Probab=97.01  E-value=0.01  Score=51.49  Aligned_cols=31  Identities=16%  Similarity=0.279  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+.|...|..+++..++|.++.+.
T Consensus        18 dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~   48 (479)
T PRK14727         18 HVAIIGSGSAAFAAAIKAAEHGARVTIIEGA   48 (479)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            5899999999999999999999999999986

>PRK07846 mycothione reductase; Reviewed

Probab=96.95  E-value=0.0094  Score=51.42  Aligned_cols=31  Identities=16%  Similarity=0.246  Sum_probs=24.6

Q ss_pred             CCeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           58 NGAVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        58 ~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      ++.|++.+|+.+.+|.+|+|||.++..+.++
T Consensus       116 ~~~V~v~~g~~~~~d~lViATGs~p~~p~i~  146 (451)
T PRK07846        116 PKTLRTGDGEEITADQVVIAAGSRPVIPPVI  146 (451)
T ss_pred             CCEEEECCCCEEEeCEEEEcCCCCCCCCCCC
Confidence            3467777787889999999999988765544

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=96.88  E-value=0.0039  Score=58.31  Aligned_cols=20  Identities=10%  Similarity=0.281  Sum_probs=17.2

Q ss_pred             EEecCEEEEecccccCCCCC
Q 037525           68 TVHADVILHCTGYKYHFPFL   87 (182)
Q Consensus        68 ~~~~D~vi~atG~~~~~~~l   87 (182)
                      .+++|.||.|+|..+++.++
T Consensus       714 ~i~~~~vi~A~G~~~~~~~~  733 (1028)
T PRK06567        714 DIKTKTVIMAIGIENNTQFD  733 (1028)
T ss_pred             cccCCEEEEecccCCccccc
Confidence            47899999999999987764

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.85  E-value=0.0022  Score=60.49  Aligned_cols=33  Identities=15%  Similarity=0.230  Sum_probs=30.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|.+|++.+.+|+++.+.+.
T Consensus       432 kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~  464 (1006)
T PRK12775        432 KVAICGSGPAGLAAAADLVKYGVDVTVYEALHV  464 (1006)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            599999999999999999999999999998653

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=96.84  E-value=0.012  Score=55.60  Aligned_cols=32  Identities=19%  Similarity=0.268  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+..|..+++...+|+++.+.+
T Consensus       165 dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~  196 (985)
T TIGR01372       165 DVLVVGAGPAGLAAALAAARAGARVILVDEQP  196 (985)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            59999999999999999999999999998764

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02697 lycopene epsilon cyclase

Probab=96.83  E-value=0.0083  Score=52.89  Aligned_cols=33  Identities=12%  Similarity=0.358  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|.-+|..|++.+.+|.++.+..+
T Consensus       110 DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p  142 (529)
T PLN02697        110 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP  142 (529)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCcEEEecCccc
Confidence            589999999999999999999889999987543

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=96.82  E-value=0.0028  Score=59.24  Aligned_cols=31  Identities=13%  Similarity=0.188  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|++|+..|..|++.+.+|+++.+.
T Consensus       385 KVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        385 NILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            6999999999999999999999999999874

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.76  E-value=0.00067  Score=58.81  Aligned_cols=74  Identities=15%  Similarity=0.265  Sum_probs=47.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCCCCCeEEcceeEEeeCCCeEEEcCC----cEEecCEEEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRNG----HTVHADVILH   76 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~~~~i~~~~~v~~~~~~~~v~~~dg----~~~~~D~vi~   76 (182)
                      +|+|||+|.+|+++|..|++.+.+|+++.+++.... ..           ....+.+ .+|.+.-|    ....+|.||.
T Consensus        18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~-~~-----------~~~~l~~-~gv~~~~~~~~~~~~~~D~Vv~   84 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLELGARVTVVDDGDDERH-RA-----------LAAILEA-LGATVRLGPGPTLPEDTDLVVT   84 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhh-HH-----------HHHHHHH-cCCEEEECCCccccCCCCEEEE
Confidence            589999999999999999998889999986542110 00           0000111 01111111    1235899999


Q ss_pred             ecccccCCCCC
Q 037525           77 CTGYKYHFPFL   87 (182)
Q Consensus        77 atG~~~~~~~l   87 (182)
                      ++|..++.+++
T Consensus        85 s~Gi~~~~~~~   95 (480)
T PRK01438         85 SPGWRPDAPLL   95 (480)
T ss_pred             CCCcCCCCHHH
Confidence            99999887653

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=96.66  E-value=0.011  Score=51.28  Aligned_cols=30  Identities=10%  Similarity=0.179  Sum_probs=28.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r   30 (182)
                      +|+|||+|++|.-.|..+++.+++|.++.+
T Consensus         6 DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          6 DVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            489999999999999999999999999997

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.65  E-value=0.0031  Score=40.00  Aligned_cols=30  Identities=17%  Similarity=0.246  Sum_probs=26.9

Q ss_pred             EEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            4 LVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         4 VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      |||+|.||+-.|..|++...+|+++++++.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            899999999999999999889999998764

...

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.51  E-value=0.024  Score=48.84  Aligned_cols=84  Identities=18%  Similarity=0.254  Sum_probs=52.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccCCCCCCC-CCCC----------------CC----CeEEcceeEEee-
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSVADGTYE-KQPG----------------FD----NMWLHSMIESAH-   56 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~~~~~~~-~~~~----------------~~----~i~~~~~v~~~~-   56 (182)
                      .|+|||+|++|.=.+..+...+  .++.++.|........ .+++                |.    .+.....|+.++ 
T Consensus        76 ~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~  155 (478)
T KOG1336|consen   76 HFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKADL  155 (478)
T ss_pred             eEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEeec
Confidence            4899999999654444444332  3577777654321100 1111                11    234456666665 


Q ss_pred             CCCeEEEcCCcEEecCEEEEecccccCC
Q 037525           57 DNGAVVFRNGHTVHADVILHCTGYKYHF   84 (182)
Q Consensus        57 ~~~~v~~~dg~~~~~D~vi~atG~~~~~   84 (182)
                      ..+.+.+.+|+.++.|.+++|||..+..
T Consensus       156 ~~K~l~~~~Ge~~kys~LilATGs~~~~  183 (478)
T KOG1336|consen  156 ASKTLVLGNGETLKYSKLIIATGSSAKT  183 (478)
T ss_pred             cccEEEeCCCceeecceEEEeecCcccc
Confidence            2358999999999999999999995543

>TIGR03452 mycothione_red mycothione reductase

Probab=96.51  E-value=0.024  Score=48.90  Aligned_cols=29  Identities=14%  Similarity=0.288  Sum_probs=23.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+-|...|...  .+++|.++.++
T Consensus         4 D~vvIG~G~~g~~aa~~~--~g~~V~lie~~   32 (452)
T TIGR03452         4 DLIIIGTGSGNSIPDPRF--ADKRIAIVEKG   32 (452)
T ss_pred             CEEEECCCHHHHHHHHHH--CCCeEEEEeCC
Confidence            589999999998876543  58899999975

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.43  E-value=0.0077  Score=52.79  Aligned_cols=32  Identities=16%  Similarity=0.310  Sum_probs=28.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||..|+|.|...++.+.++.|++-..
T Consensus         6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~   37 (621)
T COG0445           6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLNL   37 (621)
T ss_pred             ceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence            58999999999999999999998888887643

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.38  E-value=0.0039  Score=53.49  Aligned_cols=33  Identities=15%  Similarity=0.173  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||.+|++.|..|++.+.+|+++.+++.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            699999999999999999999999999987654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=96.37  E-value=0.0051  Score=48.15  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|+||+-.|.+|++..-+|.++.|+-.
T Consensus        32 DViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls   64 (262)
T COG1635          32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLS   64 (262)
T ss_pred             cEEEECcCcchHHHHHHHHhCCceEEEEEeecc
Confidence            589999999999999999999999999998743

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=96.36  E-value=0.002  Score=51.62  Aligned_cols=82  Identities=24%  Similarity=0.372  Sum_probs=53.5

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCC----------CC-----------CCCCCCeEEcceeEEee-
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTY----------EK-----------QPGFDNMWLHSMIESAH-   56 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~----------~~-----------~~~~~~i~~~~~v~~~~-   56 (182)
                      +.+|||||..|+-.|..|+.+  ..+|.+++-++-....          ++           -|.++++  ...|..++ 
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~--~~~v~~~~s   78 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRF--LNDVVTWDS   78 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHH--HHhhhhhcc
Confidence            468999999999999999974  3367777765432110          00           0111111  11133332 


Q ss_pred             CCCeEEEcCCcEEecCEEEEecccccCC
Q 037525           57 DNGAVVFRNGHTVHADVILHCTGYKYHF   84 (182)
Q Consensus        57 ~~~~v~~~dg~~~~~D~vi~atG~~~~~   84 (182)
                      .++.|++++|..+.++-+.+||||+|.+
T Consensus        79 ~ehci~t~~g~~~ky~kKOG~tg~kPkl  106 (334)
T KOG2755|consen   79 SEHCIHTQNGEKLKYFKLCLCTGYKPKL  106 (334)
T ss_pred             ccceEEecCCceeeEEEEEEecCCCcce
Confidence            2247999999999999999999999974

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=96.35  E-value=0.0042  Score=53.23  Aligned_cols=32  Identities=16%  Similarity=0.183  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||..|++.|..|++.+.+|+++.+++
T Consensus         4 dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp   35 (436)
T PRK05335          4 PVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP   35 (436)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence            59999999999999999999999999998654

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=96.33  E-value=0.0043  Score=50.55  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~   34 (182)
                      +|+|||||++|.=+|..|++.+.+|+++.|++..
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            5899999999999999999999999999997653

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.31  E-value=0.0043  Score=46.84  Aligned_cols=32  Identities=16%  Similarity=0.383  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||++|+..|.+|++...+|+++.+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            58999999999999999999888999996644

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=96.19  E-value=0.0065  Score=48.39  Aligned_cols=33  Identities=18%  Similarity=0.277  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+-.|..|++.+.+|.++.++..
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~   34 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF   34 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            589999999999999999999889999998753

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.16  E-value=0.033  Score=48.35  Aligned_cols=31  Identities=10%  Similarity=0.295  Sum_probs=27.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||||..|+|.|..-++.+.+.+|++.+
T Consensus        30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   30 DVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             cEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            5899999999999999999988887777654

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.15  E-value=0.061  Score=48.73  Aligned_cols=31  Identities=6%  Similarity=0.077  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+-|...|..+++.+++|.++.+.
T Consensus       118 DviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        118 DVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            5899999999999999999999999999864

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.04  E-value=0.0081  Score=52.00  Aligned_cols=33  Identities=18%  Similarity=0.402  Sum_probs=30.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      .+||||||.+|++.|++|++.+-+|+|+.+.+.
T Consensus       126 svLVIGGGvAGitAAl~La~~G~~v~LVEKeps  158 (622)
T COG1148         126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPS  158 (622)
T ss_pred             ceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            489999999999999999999999999998764

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=96.00  E-value=0.0074  Score=47.10  Aligned_cols=33  Identities=18%  Similarity=0.334  Sum_probs=27.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|+||+-.|..|++...+|.++.++..
T Consensus        19 DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~   51 (230)
T PF01946_consen   19 DVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLS   51 (230)
T ss_dssp             SEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS
T ss_pred             CEEEECCChhHHHHHHHHHHCCCeEEEEecCCC
Confidence            589999999999999999999999999998753

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=95.93  E-value=0.01  Score=49.42  Aligned_cols=32  Identities=19%  Similarity=0.113  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||..|+=+|.+|++.+.+|+++.|+.
T Consensus         5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~   36 (376)
T PRK11259          5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM   36 (376)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            58999999999999999999999999999864

>PRK07233 hypothetical protein; Provisional

Probab=95.92  E-value=0.01  Score=50.20  Aligned_cols=33  Identities=21%  Similarity=0.254  Sum_probs=30.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++.+++.
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~   33 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQ   33 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCC
Confidence            699999999999999999999999999988753

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.91  E-value=0.011  Score=49.97  Aligned_cols=33  Identities=15%  Similarity=0.276  Sum_probs=30.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|.=+|..|++.+-+|+++++++.
T Consensus        20 dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   52 (415)
T PRK07364         20 DVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA   52 (415)
T ss_pred             CEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            589999999999999999999999999998753

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=95.88  E-value=0.012  Score=47.05  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+-.|..|++...+|.++.+...
T Consensus        27 DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~   59 (257)
T PRK04176         27 DVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS   59 (257)
T ss_pred             CEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            589999999999999999998889999998653

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=95.83  E-value=0.012  Score=49.48  Aligned_cols=32  Identities=22%  Similarity=0.227  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||++|+=+|..|++.+.+|.++++.+
T Consensus         8 dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~   39 (392)
T PRK08773          8 DAVIVGGGVVGAACALALADAGLSVALVEGRE   39 (392)
T ss_pred             CEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            58999999999999999999998999999864

>TIGR00292 thiazole biosynthesis enzyme

Probab=95.81  E-value=0.013  Score=46.88  Aligned_cols=33  Identities=30%  Similarity=0.386  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+=.|..|++...+|.++.|+..
T Consensus        23 DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~   55 (254)
T TIGR00292        23 DVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA   55 (254)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            589999999999999999999899999998754

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=95.80  E-value=0.011  Score=50.14  Aligned_cols=33  Identities=18%  Similarity=0.316  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|.-.|..|++.+.+|.+++++..
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~   34 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPD   34 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            699999999999999999999999999998643

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK09126 hypothetical protein; Provisional

Probab=95.76  E-value=0.012  Score=49.38  Aligned_cols=32  Identities=31%  Similarity=0.558  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||++|+-.|..|++.+-+|++++|.+
T Consensus         5 dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~   36 (392)
T PRK09126          5 DIVVVGAGPAGLSFARSLAGSGLKVTLIERQP   36 (392)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            58999999999999999999999999999865

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=95.75  E-value=0.011  Score=48.24  Aligned_cols=32  Identities=19%  Similarity=0.389  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|..|+-+|.+|++.+.+|+++.+..
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~   32 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD   32 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence            48999999999999999999999999999873

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=95.74  E-value=0.013  Score=48.68  Aligned_cols=32  Identities=19%  Similarity=0.331  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|.=+|..|++.+.+|++++|+.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~   32 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATP   32 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            59999999999999999999999999999875

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=95.72  E-value=0.012  Score=49.83  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|.-+|.+|++.+.+|+++.|+.
T Consensus         3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            58999999999999999999889999999875

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=95.71  E-value=0.014  Score=48.62  Aligned_cols=32  Identities=22%  Similarity=0.186  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||..|+-+|.+|++.+.+|+++.+..
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~   33 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD   33 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            58999999999999999999988999998853

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=95.69  E-value=0.014  Score=48.69  Aligned_cols=32  Identities=16%  Similarity=0.351  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|+|||+|++|.-.|..|++.+ -+|++++|.+
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~   33 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS   33 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            5899999999999999999999 8999999864

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=95.68  E-value=0.011  Score=52.93  Aligned_cols=31  Identities=16%  Similarity=0.297  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||||++|++.|..+++.+.+|.+++++
T Consensus         6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~   36 (618)
T PRK05192          6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHN   36 (618)
T ss_pred             eEEEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence            5999999999999999999999999999886

>PRK08244 hypothetical protein; Provisional

Probab=95.67  E-value=0.013  Score=50.90  Aligned_cols=33  Identities=15%  Similarity=0.302  Sum_probs=30.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+-+|..|++.+-+|+++++.+.
T Consensus         4 dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~   36 (493)
T PRK08244          4 EVIIIGGGPVGLMLASELALAGVKTCVIERLKE   36 (493)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            599999999999999999999999999998753

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=95.66  E-value=0.015  Score=48.64  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=30.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|.=.|..|++.+.+|++++++..
T Consensus         7 dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07608          7 DVVVVGGGLVGASLALALAQSGLRVALLAPRAP   39 (388)
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            589999999999999999999889999998754

>PRK06184 hypothetical protein; Provisional

Probab=95.65  E-value=0.014  Score=50.85  Aligned_cols=33  Identities=15%  Similarity=0.379  Sum_probs=30.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+=.|..|++.+-+|+++++.+.
T Consensus         5 dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~   37 (502)
T PRK06184          5 DVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE   37 (502)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            599999999999999999999999999998653

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=95.63  E-value=0.014  Score=49.24  Aligned_cols=31  Identities=23%  Similarity=0.346  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|++|.=.|..|++.+.+|.+++++
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            5999999999999999999999999999987

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=95.63  E-value=0.016  Score=48.58  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|.-.|..|++.+.+|+++++.+
T Consensus         9 dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~   40 (388)
T PRK07494          9 DIAVIGGGPAGLAAAIALARAGASVALVAPEP   40 (388)
T ss_pred             CEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            59999999999999999999988999999864

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.61  E-value=0.1  Score=43.73  Aligned_cols=83  Identities=23%  Similarity=0.292  Sum_probs=48.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEe-ccCC--CCCCC-----CCC----------------CCC----CeEEccee
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVS-RSVA--DGTYE-----KQP----------------GFD----NMWLHSMI   52 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~-r~~~--~~~~~-----~~~----------------~~~----~i~~~~~v   52 (182)
                      .|+|||||+.|.-.|..-++.+-+.=++. |-..  .....     ..|                .|+    +.....++
T Consensus       213 DVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~~l  292 (520)
T COG3634         213 DVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRASKL  292 (520)
T ss_pred             eEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhhcc
Confidence            48999999999999999998765433332 2111  00000     011                010    11111122


Q ss_pred             EEee-CC--CeEEEcCCcEEecCEEEEecccccC
Q 037525           53 ESAH-DN--GAVVFRNGHTVHADVILHCTGYKYH   83 (182)
Q Consensus        53 ~~~~-~~--~~v~~~dg~~~~~D~vi~atG~~~~   83 (182)
                      ..-. ++  ..|++.+|..++...||++||.+..
T Consensus       293 ~~a~~~~~l~ev~l~nGavLkaktvIlstGArWR  326 (520)
T COG3634         293 EPAAVEGGLIEVELANGAVLKARTVILATGARWR  326 (520)
T ss_pred             eecCCCCccEEEEecCCceeccceEEEecCcchh
Confidence            2111 11  2588999999999999999998764

>PRK07045 putative monooxygenase; Reviewed

Probab=95.61  E-value=0.014  Score=48.94  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|+=.|..|++.+-+|+++++.+.
T Consensus         7 ~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07045          7 DVLINGSGIAGVALAHLLGARGHSVTVVERAAR   39 (388)
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence            589999999999999999999889999998764

>PRK08013 oxidoreductase; Provisional

Probab=95.57  E-value=0.017  Score=48.84  Aligned_cols=33  Identities=15%  Similarity=0.355  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|.=.|..|++.+-+|+++++.+.
T Consensus         5 dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          5 DVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            589999999999999999999999999998653

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=95.55  E-value=0.0089  Score=56.43  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=31.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~   34 (182)
                      ||+|||+|++|+-.|..|.+.+..|++..|++..
T Consensus      1787 ~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1787 RVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred             EEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence            6999999999999999999999999999998754

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=95.55  E-value=0.016  Score=50.86  Aligned_cols=32  Identities=25%  Similarity=0.406  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||.+|+-+|.+|+..+.+|.|+.+.+
T Consensus         8 DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d   39 (508)
T PRK12266          8 DLLVIGGGINGAGIARDAAGRGLSVLLCEQDD   39 (508)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            59999999999999999999999999999864

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=95.53  E-value=0.021  Score=47.06  Aligned_cols=33  Identities=24%  Similarity=0.281  Sum_probs=30.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +.+|||+|.||+=+|..+++.+++|.++.+++.
T Consensus         3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~H   35 (374)
T COG0562           3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNH   35 (374)
T ss_pred             cEEEECCchhHHHHHHHHHHcCCEEEEEecccc
Confidence            479999999999999999999999999998764

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=95.49  E-value=0.017  Score=48.67  Aligned_cols=32  Identities=6%  Similarity=0.253  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~   32 (182)
                      +|+|||||.+|+=+|.+|++.  ..+|+++.+..
T Consensus         4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~   37 (393)
T PRK11728          4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES   37 (393)
T ss_pred             cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            589999999999999999998  88999999864

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=95.48  E-value=0.018  Score=47.98  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=30.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~   34 (182)
                      +|+|||+|++|++.|..|++...+|+++.+.+..
T Consensus        20 ~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   53 (352)
T PRK12770         20 KVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP   53 (352)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            5899999999999999999999999999987543

>PRK08163 salicylate hydroxylase; Provisional

Probab=95.48  E-value=0.017  Score=48.48  Aligned_cols=33  Identities=18%  Similarity=0.332  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+=.|..|++.+-+|++++|++.
T Consensus         6 ~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          6 PVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            599999999999999999999889999998754

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=95.44  E-value=0.019  Score=49.21  Aligned_cols=32  Identities=22%  Similarity=0.215  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|.=.|..|++.+.+|.++.|+.
T Consensus         7 DViIVGaGpAG~~aA~~La~~G~~V~llEr~~   38 (428)
T PRK10157          7 DAIIVGAGLAGSVAALVLAREGAQVLVIERGN   38 (428)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence            58999999999999999999999999999864

>PTZ00188 adrenodoxin reductase; Provisional

Probab=95.42  E-value=0.019  Score=50.14  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHh-ccCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLA-GVAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~-~~a~~V~l~~r~~~~   34 (182)
                      +|+|||+|++|+..|..|+ +...+|+++.+.+..
T Consensus        41 rVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p   75 (506)
T PTZ00188         41 KVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP   75 (506)
T ss_pred             EEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            5999999999999999876 457789999997654

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=95.41  E-value=0.019  Score=49.69  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=30.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|.=.|..|++.+.+|.+++++..
T Consensus        41 DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         41 RVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            599999999999999999999999999998743

>PRK10015 oxidoreductase; Provisional

Probab=95.41  E-value=0.021  Score=48.95  Aligned_cols=32  Identities=19%  Similarity=0.212  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|.=.|..|++.+.+|.++.|.+
T Consensus         7 DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~   38 (429)
T PRK10015          7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGD   38 (429)
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            58999999999999999999999999999865

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=95.39  E-value=0.021  Score=47.80  Aligned_cols=32  Identities=19%  Similarity=0.326  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|.-+|..|++.+.+|.++.+++
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~   32 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHP   32 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence            58999999999999999999888999999764

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK06185 hypothetical protein; Provisional

Probab=95.39  E-value=0.019  Score=48.40  Aligned_cols=32  Identities=16%  Similarity=0.211  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||++|+=.|..|++.+.+|+++++++
T Consensus         8 dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~   39 (407)
T PRK06185          8 DCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA   39 (407)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            59999999999999999999988999999864

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=95.38  E-value=0.019  Score=48.44  Aligned_cols=32  Identities=22%  Similarity=0.336  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||++|.=+|..|++.+-+|+++++.+
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            59999999999999999999888999999765

>PRK06126 hypothetical protein; Provisional

Probab=95.37  E-value=0.019  Score=50.54  Aligned_cols=32  Identities=22%  Similarity=0.357  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||++|+=.|..|++.+-+|+++.|.+
T Consensus         9 ~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~   40 (545)
T PRK06126          9 PVLIVGGGPVGLALALDLGRRGVDSILVERKD   40 (545)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999875

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.35  E-value=0.1  Score=41.16  Aligned_cols=29  Identities=17%  Similarity=0.179  Sum_probs=24.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVS   29 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~   29 (182)
                      +|+|||+|+.|--.|..+++.--+-.|..
T Consensus        10 ~v~IiGSGPAa~tAAiYaaraelkPllfE   38 (322)
T KOG0404|consen   10 NVVIIGSGPAAHTAAIYAARAELKPLLFE   38 (322)
T ss_pred             eEEEEccCchHHHHHHHHhhcccCceEEe
Confidence            58999999999999999998765555554

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=95.34  E-value=0.016  Score=49.60  Aligned_cols=33  Identities=18%  Similarity=0.262  Sum_probs=26.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|+=.|...++.+.+|.|+++.+.
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~   33 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGF   33 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSS
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            489999999999999999999999999998764

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=95.31  E-value=0.022  Score=47.83  Aligned_cols=32  Identities=19%  Similarity=0.238  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||++|.=.|..|++.+.+|+++++.+
T Consensus         7 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          7 DIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             cEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            58999999999999999999999999998764

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=95.31  E-value=0.02  Score=48.32  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||..|+=+|.+|++.+.+|.++.+..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            58999999999999999999999999999863

>PRK06475 salicylate hydroxylase; Provisional

Probab=95.27  E-value=0.024  Score=47.88  Aligned_cols=33  Identities=12%  Similarity=0.283  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|+=.|..|++.+-+|+++++.+.
T Consensus         4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~   36 (400)
T PRK06475          4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQE   36 (400)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            699999999999999999998889999998754

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=95.26  E-value=0.026  Score=47.77  Aligned_cols=32  Identities=28%  Similarity=0.354  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-+|..|++.+.+|.++.++.
T Consensus         3 DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~   34 (377)
T TIGR00031         3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKRN   34 (377)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            58999999999999999999888999998864

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.25  E-value=0.023  Score=49.69  Aligned_cols=32  Identities=25%  Similarity=0.411  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||.+|+=+|.+|+..+.+|.|+.+.+
T Consensus         8 DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d   39 (502)
T PRK13369          8 DLFVIGGGINGAGIARDAAGRGLKVLLCEKDD   39 (502)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            59999999999999999999988999999874

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.24  E-value=0.022  Score=47.67  Aligned_cols=31  Identities=10%  Similarity=0.145  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||||++|.-.|..|++.+-+|+++++.
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~   33 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK   33 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence            5899999999999999999999999999975

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=95.23  E-value=0.027  Score=47.72  Aligned_cols=33  Identities=18%  Similarity=0.375  Sum_probs=30.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|.-.|..|++.+-+|.++.++..
T Consensus         5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~   37 (396)
T COG0644           5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE   37 (396)
T ss_pred             eEEEECCchHHHHHHHHHHHcCCeEEEEecCCC
Confidence            599999999999999999999889999998754

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=95.22  E-value=0.27  Score=47.09  Aligned_cols=88  Identities=9%  Similarity=0.071  Sum_probs=51.5

Q ss_pred             EEecCEEEEecccccCCCCCCCCCceecCCC-ccccccccccCCCCCCCEEEEeccCCcc---c--ccHHHHHHHHHHHH
Q 037525           68 TVHADVILHCTGYKYHFPFLETNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKVI---P--FPLCEYQSKWIAGV  141 (182)
Q Consensus        68 ~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~~---~--~~~~e~qa~~ia~~  141 (182)
                      .+++|.||+|.||.-.-+-+.....++.+.. .+.-.+. -+..+ .+.+|..|++..+.   .  ++-.-..|+.+-..
T Consensus      2041 ~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~-~y~t~-v~~vfaagdcrrgqslvvwai~egrq~a~~vd~~ 2118 (2142)
T KOG0399|consen 2041 IIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKD-SYSTD-VAKVFAAGDCRRGQSLVVWAIQEGRQAARQVDEL 2118 (2142)
T ss_pred             eeecceeeeeccccCcchhhhhhcCcccCccccccCCCc-ccccc-ccceeecccccCCceEEEEEehhhhHHHHHHHHH
Confidence            4699999999999654333322222222111 1111222 24555 68999999998542   2  34444666777767


Q ss_pred             HcCCCCCCCHHHHHHH
Q 037525          142 LSGQIVLPSQEEMMED  157 (182)
Q Consensus       142 l~g~~~lP~~~~m~~~  157 (182)
                      +.|+..||...-+.+.
T Consensus      2119 ~~~~t~l~~~ggiv~~ 2134 (2142)
T KOG0399|consen 2119 MGGTTDLPGDGGIVQR 2134 (2142)
T ss_pred             hCCcccCCCCCchhhH
Confidence            7788888876544433

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=95.21  E-value=0.024  Score=50.20  Aligned_cols=32  Identities=31%  Similarity=0.379  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||.+|+-+|.+|++.+.+|.|+.+.+
T Consensus         8 DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d   39 (546)
T PRK11101          8 DVIIIGGGATGAGIARDCALRGLRCILVERHD   39 (546)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            58999999999999999999999999999864

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=95.19  E-value=0.027  Score=46.77  Aligned_cols=32  Identities=22%  Similarity=0.256  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-+|.+|++.+.+|+++.+..
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~   33 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS   33 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            58999999999999999999988999998754

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.18  E-value=0.024  Score=49.23  Aligned_cols=33  Identities=21%  Similarity=0.345  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|..|++.+.+|+++.+.+.
T Consensus       145 ~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~  177 (471)
T PRK12810        145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADR  177 (471)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            589999999999999999999999999998754

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=95.18  E-value=0.023  Score=47.93  Aligned_cols=31  Identities=23%  Similarity=0.425  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||||++|+=+|..|++.+-+|+++++.
T Consensus         4 dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           4 DVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            5999999999999999999999999999997

>PRK11445 putative oxidoreductase; Provisional

Probab=95.18  E-value=0.023  Score=47.21  Aligned_cols=31  Identities=19%  Similarity=0.327  Sum_probs=28.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|.-.|..|++. .+|++++|++
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~   33 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH   33 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence            589999999999999999998 8999999875

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.14  E-value=0.019  Score=39.29  Aligned_cols=32  Identities=22%  Similarity=0.346  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||+.|..=+..|.+.+.+|+++.+..
T Consensus         9 ~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    9 RVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            58999999999999999999988999998753

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=95.12  E-value=0.025  Score=47.48  Aligned_cols=32  Identities=16%  Similarity=0.207  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||++|.=.|..|++.+-+|+++++.+
T Consensus         5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            59999999999999999999988999999764

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=95.11  E-value=0.025  Score=47.67  Aligned_cols=33  Identities=9%  Similarity=0.169  Sum_probs=30.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|.=.|..|++.+.+|+++++++.
T Consensus         4 dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          4 QVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            589999999999999999999999999998763

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=95.10  E-value=0.026  Score=48.07  Aligned_cols=33  Identities=12%  Similarity=0.255  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~~   33 (182)
                      +|+|||||.||+-.|..|++.+  .+|++.+.++.
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~   36 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDR   36 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCC
Confidence            6999999999999999999965  68999987654

>PRK12831 putative oxidoreductase; Provisional

Probab=95.10  E-value=0.024  Score=49.11  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+..|..|++...+|+++.+.+
T Consensus       142 ~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~  173 (464)
T PRK12831        142 KVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH  173 (464)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            58999999999999999999999999998754

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=95.10  E-value=0.025  Score=47.83  Aligned_cols=31  Identities=6%  Similarity=0.236  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||||++|.=.|..|++.+-+|+++++.
T Consensus         6 dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          6 DVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5999999999999999999998899999985

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=95.08  E-value=0.061  Score=45.39  Aligned_cols=80  Identities=18%  Similarity=0.165  Sum_probs=50.0

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCC---CCCCCCCCCeEE----------cceeEEeeCCCeEEE-c
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGT---YEKQPGFDNMWL----------HSMIESAHDNGAVVF-R   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~---~~~~~~~~~i~~----------~~~v~~~~~~~~v~~-~   64 (182)
                      +|.|||+|++|+=.|..|.+.  ..+|++..+.+....   ++-.|.++.+..          +++. ++..  .|.+ .
T Consensus        22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rf-sf~g--Nv~vG~   98 (468)
T KOG1800|consen   22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERF-SFFG--NVKVGR   98 (468)
T ss_pred             eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccce-EEEe--cceecc
Confidence            589999999999999999884  347999988765321   344566554331          1111 1111  2333 2


Q ss_pred             CCc----EEecCEEEEecccccC
Q 037525           65 NGH----TVHADVILHCTGYKYH   83 (182)
Q Consensus        65 dg~----~~~~D~vi~atG~~~~   83 (182)
                      |.+    +-..|+||+|+|..-+
T Consensus        99 dvsl~eL~~~ydavvLaYGa~~d  121 (468)
T KOG1800|consen   99 DVSLKELTDNYDAVVLAYGADGD  121 (468)
T ss_pred             cccHHHHhhcccEEEEEecCCCC
Confidence            332    1258999999998655

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=95.08  E-value=0.026  Score=48.73  Aligned_cols=33  Identities=12%  Similarity=0.261  Sum_probs=30.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|+.|+..|..|++...+|+++.+.+.
T Consensus       135 ~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~  167 (449)
T TIGR01316       135 KVAVIGAGPAGLACASELAKAGHSVTVFEALHK  167 (449)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            589999999999999999999999999998653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=95.05  E-value=0.03  Score=47.02  Aligned_cols=32  Identities=16%  Similarity=0.245  Sum_probs=28.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~   32 (182)
                      +|+|||||++|+=.|..|++.+  -+|+++++.+
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~   36 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP   36 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence            5899999999999999999974  6899999865

>PRK06834 hypothetical protein; Provisional

Probab=95.02  E-value=0.027  Score=49.16  Aligned_cols=32  Identities=19%  Similarity=0.397  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+=.|..|++.+-+|+++.+.+
T Consensus         5 dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~   36 (488)
T PRK06834          5 AVVIAGGGPTGLMLAGELALAGVDVAIVERRP   36 (488)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            58999999999999999999999999999865

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.00  E-value=0.029  Score=46.97  Aligned_cols=31  Identities=19%  Similarity=0.323  Sum_probs=28.8

Q ss_pred             CEEEEcCCccHHHHHHHHhcc---CCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGV---AKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~---a~~V~l~~r~   31 (182)
                      +|+|||+|++|.-+|..|++.   +-+|++++|.
T Consensus         5 dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          5 DVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            589999999999999999997   8899999984

>PRK07190 hypothetical protein; Provisional

Probab=95.00  E-value=0.026  Score=49.24  Aligned_cols=32  Identities=9%  Similarity=0.070  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+=+|..|++.+.+|.++.+.+
T Consensus         7 dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~   38 (487)
T PRK07190          7 DVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD   38 (487)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            58999999999999999999888999999865

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=94.99  E-value=0.028  Score=47.48  Aligned_cols=33  Identities=12%  Similarity=0.215  Sum_probs=30.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|.=.|..|++.+-+|.++++.+.
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            589999999999999999999999999998763

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=94.98  E-value=0.029  Score=49.48  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+=+|..|++.+.+|.++.+++
T Consensus        25 dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~   56 (547)
T PRK08132         25 PVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD   56 (547)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            59999999999999999999999999999875

>TIGR02731 phytoene_desat phytoene desaturase

Probab=94.94  E-value=0.033  Score=47.81  Aligned_cols=33  Identities=9%  Similarity=0.175  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|.+.+.+|+++++++.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~   33 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDV   33 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            699999999999999999999999999988754

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=94.93  E-value=0.033  Score=47.76  Aligned_cols=31  Identities=16%  Similarity=0.311  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhc----cCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAG----VAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~----~a~~V~l~~r~   31 (182)
                      +|+|||||++|+=+|..|++    .+.+|.+++++
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~   36 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV   36 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence            59999999999999999998    67899999984

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07538 hypothetical protein; Provisional

Probab=94.89  E-value=0.034  Score=47.21  Aligned_cols=33  Identities=12%  Similarity=0.223  Sum_probs=30.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|+=.|..|++.+-+|+++.|.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE   34 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence            699999999999999999998889999998753

>PLN02268 probable polyamine oxidase

Probab=94.88  E-value=0.038  Score=47.13  Aligned_cols=32  Identities=19%  Similarity=0.359  Sum_probs=28.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.||+-.|..|.+.+.+|++++.++
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~   33 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLESRD   33 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            69999999999999999999888899887654

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=94.87  E-value=0.035  Score=48.87  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=30.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+=+|..|++.+.+|.+++|.+.
T Consensus        12 dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~   44 (538)
T PRK06183         12 DVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT   44 (538)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            599999999999999999999889999998753

>PRK07208 hypothetical protein; Provisional

Probab=94.86  E-value=0.035  Score=47.96  Aligned_cols=33  Identities=9%  Similarity=0.266  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.||+-.|..|++...+|+++.+++.
T Consensus         6 ~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~   38 (479)
T PRK07208          6 SVVIIGAGPAGLTAAYELLKRGYPVTVLEADPV   38 (479)
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            589999999999999999998889999987653

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=94.86  E-value=0.035  Score=50.04  Aligned_cols=32  Identities=28%  Similarity=0.364  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||..|+-+|.+|+..+.+|.|+.+++
T Consensus        73 DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d  104 (627)
T PLN02464         73 DVLVVGGGATGAGVALDAATRGLRVGLVERED  104 (627)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence            59999999999999999999999999999864

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=94.84  E-value=0.034  Score=50.17  Aligned_cols=33  Identities=15%  Similarity=0.378  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+-+|..|++. +-+|.++.+++.
T Consensus        34 dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         34 DVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            599999999999999999995 788999998753

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.76  E-value=0.035  Score=50.17  Aligned_cols=33  Identities=15%  Similarity=0.233  Sum_probs=30.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+-.|..|++.+.+|+++.+.+.
T Consensus       329 ~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~  361 (654)
T PRK12769        329 RVAIIGAGPAGLACADVLARNGVAVTVYDRHPE  361 (654)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            599999999999999999999999999988654

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=94.68  E-value=0.039  Score=46.68  Aligned_cols=33  Identities=15%  Similarity=0.296  Sum_probs=28.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+=.|..+++.+.+|.++.+.+.
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~   33 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR   33 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence            599999999999999999999999999998654

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=94.67  E-value=0.041  Score=47.18  Aligned_cols=33  Identities=21%  Similarity=0.239  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhcc----CCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGV----AKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~----a~~V~l~~r~~~   33 (182)
                      +|+|||+|.||+-.|..|++.    +.+|++.++++.
T Consensus         4 ~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r   40 (462)
T TIGR00562         4 HVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDR   40 (462)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCc
Confidence            589999999999999999997    788999988764

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.59  E-value=0.045  Score=47.52  Aligned_cols=33  Identities=15%  Similarity=0.249  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|..|++...+|+++.+.+.
T Consensus       143 ~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~  175 (467)
T TIGR01318       143 RVAVIGAGPAGLACADILARAGVQVVVFDRHPE  175 (467)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            589999999999999999998889999987654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.55  E-value=0.046  Score=47.92  Aligned_cols=33  Identities=15%  Similarity=0.318  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.||+-.|..|.+.+-+|++..-++.
T Consensus        17 ~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdR   49 (501)
T KOG0029|consen   17 KVIVIGAGLAGLSAARQLQDFGFDVLVLEARDR   49 (501)
T ss_pred             cEEEECCcHHHHHHHHHHHHcCCceEEEeccCC
Confidence            599999999999999999999999999986653

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=94.54  E-value=0.046  Score=46.18  Aligned_cols=32  Identities=19%  Similarity=0.285  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-C-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV-A-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a-~~V~l~~r~~   32 (182)
                      +|+|||||.+|.-+|.+|++. . ++|++++|+.
T Consensus        32 dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        32 DVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             CEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            589999999999999999985 6 5899999864

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=94.52  E-value=0.047  Score=45.49  Aligned_cols=32  Identities=13%  Similarity=0.251  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||.+|+-+|.+|++.+.+|+++.+..
T Consensus         6 ~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~   37 (387)
T COG0665           6 DVVIIGGGIVGLSAAYYLAERGADVTVLEAGE   37 (387)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence            58999999999999999999888999998764

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.50  E-value=0.033  Score=41.03  Aligned_cols=32  Identities=25%  Similarity=0.283  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|+-|.-+|..|++...+|+|..|.+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999999865

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=94.47  E-value=0.046  Score=44.00  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=28.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~   34 (182)
                      +++|||+|..|.=+|..|++.. .+|.++++++.+
T Consensus         2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~   36 (296)
T PF00732_consen    2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY   36 (296)
T ss_dssp             EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence            4899999999999999999976 589999998754

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=94.46  E-value=0.045  Score=49.54  Aligned_cols=32  Identities=16%  Similarity=0.174  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||.+|+-+|..|++.+.+|+++.+..
T Consensus       262 dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        262 DAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            58999999999999999999999999999863

>TIGR02734 crtI_fam phytoene desaturase

Probab=94.45  E-value=0.042  Score=47.84  Aligned_cols=32  Identities=16%  Similarity=0.287  Sum_probs=29.8

Q ss_pred             EEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            2 IILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         2 V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      |+|||+|.+|+-.|..|++.+.+|+++++++.
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~   32 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDK   32 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            68999999999999999999999999998764

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PLN02985 squalene monooxygenase

Probab=94.45  E-value=0.048  Score=47.97  Aligned_cols=32  Identities=25%  Similarity=0.489  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|.=.|..|++.+.+|++++|..
T Consensus        45 DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         45 DVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            58999999999999999999999999999864

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=94.44  E-value=0.049  Score=47.04  Aligned_cols=32  Identities=13%  Similarity=0.142  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=+|.+|++.  +.+|++++++.
T Consensus        26 DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~   59 (460)
T TIGR03329        26 DVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL   59 (460)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            599999999999999999997  67999998753

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=94.40  E-value=0.047  Score=49.40  Aligned_cols=33  Identities=9%  Similarity=0.224  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|..|++.+.+|+++.+.+.
T Consensus       195 ~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~  227 (652)
T PRK12814        195 KVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ  227 (652)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            599999999999999999999999999988654

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.39  E-value=0.058  Score=47.11  Aligned_cols=33  Identities=12%  Similarity=0.256  Sum_probs=30.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|..|+=.|..|++.+.+|++++|...
T Consensus         5 dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~   37 (487)
T COG1233           5 DVVVIGAGLNGLAAAALLARAGLKVTVLEKNDR   37 (487)
T ss_pred             cEEEECCChhHHHHHHHHHhCCCEEEEEEecCC
Confidence            589999999999999999999999999997653

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.38  E-value=0.053  Score=41.95  Aligned_cols=31  Identities=16%  Similarity=0.355  Sum_probs=28.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||||.+|.--+..|.+.+.+|+++...
T Consensus        11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470        11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            5899999999999999999998899998764

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=94.36  E-value=0.057  Score=46.20  Aligned_cols=32  Identities=16%  Similarity=0.237  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++.+ .+|.++.+.+
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~   33 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMP   33 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCC
Confidence            5999999999999999999988 8999998764

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=94.33  E-value=0.049  Score=47.54  Aligned_cols=33  Identities=18%  Similarity=0.296  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|..|++...+|+++.+.+.
T Consensus       145 ~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~  177 (485)
T TIGR01317       145 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR  177 (485)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            589999999999999999998889999987653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=94.32  E-value=0.14  Score=42.64  Aligned_cols=35  Identities=11%  Similarity=0.076  Sum_probs=24.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVADG   35 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~~   35 (182)
                      +++.||.|++++-+|..|.+.. .++..+.+++.+.
T Consensus         4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~   39 (341)
T PF13434_consen    4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFS   39 (341)
T ss_dssp             SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--
T ss_pred             eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCC
Confidence            4899999999999999999976 6788888877653

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=94.31  E-value=0.056  Score=46.63  Aligned_cols=32  Identities=13%  Similarity=0.193  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++.+.+|.++.+.+
T Consensus         6 DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~   37 (466)
T PRK08274          6 DVLVIGGGNAALCAALAAREAGASVLLLEAAP   37 (466)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            59999999999999999999988999998754

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=94.29  E-value=0.061  Score=47.35  Aligned_cols=32  Identities=31%  Similarity=0.497  Sum_probs=30.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||.+|+-+|.+++..+-+|.|+.+++
T Consensus        14 DviVIGGGitG~GiArDaA~RGl~v~LvE~~D   45 (532)
T COG0578          14 DVIVIGGGITGAGIARDAAGRGLKVALVEKGD   45 (532)
T ss_pred             CEEEECCchhhHHHHHHHHhCCCeEEEEecCc
Confidence            58999999999999999999999999999875

>PRK06996 hypothetical protein; Provisional

Probab=94.26  E-value=0.06  Score=45.49  Aligned_cols=32  Identities=19%  Similarity=0.239  Sum_probs=28.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccC----CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA----KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a----~~V~l~~r~~   32 (182)
                      +|+|||||+.|.-+|..|++.+    .+|+++++.+
T Consensus        13 dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996         13 DIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             CEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            5899999999999999999875    4799999864

>PLN02576 protoporphyrinogen oxidase

Probab=94.25  E-value=0.058  Score=46.81  Aligned_cols=33  Identities=18%  Similarity=0.190  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~~   33 (182)
                      +|+|||||.||+-.|..|++. +.+|++++.++.
T Consensus        14 ~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~r   47 (496)
T PLN02576         14 DVAVVGAGVSGLAAAYALASKHGVNVLVTEARDR   47 (496)
T ss_pred             CEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence            589999999999999999998 789999988754

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.16  E-value=0.051  Score=49.02  Aligned_cols=33  Identities=15%  Similarity=0.280  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|..|++.+.+|+++.+.+.
T Consensus       312 kVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~  344 (639)
T PRK12809        312 KVAVIGAGPAGLGCADILARAGVQVDVFDRHPE  344 (639)
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence            589999999999999999999889999998764

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=94.15  E-value=0.065  Score=46.58  Aligned_cols=33  Identities=15%  Similarity=0.287  Sum_probs=30.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|..|+-.|..|++.+.+|.++++++.
T Consensus         3 dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~   35 (492)
T TIGR02733         3 SVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQ   35 (492)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            589999999999999999999999999998754

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=94.02  E-value=0.065  Score=48.58  Aligned_cols=32  Identities=6%  Similarity=0.161  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||.+|+=+|..|++.+-+|++++|.+
T Consensus        83 ~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         83 RVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            69999999999999999999999999999864

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=93.92  E-value=0.072  Score=46.50  Aligned_cols=31  Identities=16%  Similarity=0.279  Sum_probs=28.4

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~   31 (182)
                      +|+|||||..|+-+|.+|++.  ..+|++++|.
T Consensus         2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~   34 (483)
T TIGR01320         2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERL   34 (483)
T ss_pred             cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence            589999999999999999996  6789999984

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=93.91  E-value=0.45  Score=43.43  Aligned_cols=88  Identities=14%  Similarity=0.159  Sum_probs=56.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC---eEEEEeccCCCCC-----CCCCCC----------------CCCeEE--cceeEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAK---EVHLVSRSVADGT-----YEKQPG----------------FDNMWL--HSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~---~V~l~~r~~~~~~-----~~~~~~----------------~~~i~~--~~~v~~   54 (182)
                      +++|||.|..|.-...++.+.+.   .|+++...+....     .+.+++                ..++++  ...+..
T Consensus         5 klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~~   84 (793)
T COG1251           5 KLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVIQ   84 (793)
T ss_pred             eEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeEE
Confidence            57999999999998888888544   5666654432211     011111                013433  456667


Q ss_pred             eeCC-CeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           55 AHDN-GAVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        55 ~~~~-~~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      ++.+ +.|+.++|..+..|-+|+|||..|-.+.++
T Consensus        85 idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiP  119 (793)
T COG1251          85 IDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIP  119 (793)
T ss_pred             eccCcceEEccCCcEeecceeEEecCccccccCCC
Confidence            7644 356666788899999999999866443333

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=93.91  E-value=0.054  Score=40.96  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=27.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|..|..+|..++..+.+|++..+.+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            58999999999999999999999999998864

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PTZ00188 adrenodoxin reductase; Provisional

Probab=93.85  E-value=0.082  Score=46.25  Aligned_cols=34  Identities=26%  Similarity=0.311  Sum_probs=27.6

Q ss_pred             CEEEEcCCccHHHHHHHHhc---------------------cCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAG---------------------VAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~---------------------~a~~V~l~~r~~~~   34 (182)
                      +++|||.||.|+|+|..|+.                     ..++|+++.|+.+.
T Consensus       199 ~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~  253 (506)
T PTZ00188        199 TSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFW  253 (506)
T ss_pred             cEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHH
Confidence            48999999999999997532                     34579999998763

>PRK07121 hypothetical protein; Validated

Probab=93.81  E-value=0.079  Score=46.16  Aligned_cols=32  Identities=19%  Similarity=0.284  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++.+.+|.++.+..
T Consensus        22 DVvVVGaG~AGl~AA~~aae~G~~VillEK~~   53 (492)
T PRK07121         22 DVVVVGFGAAGACAAIEAAAAGARVLVLERAA   53 (492)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            59999999999999999999888999998754

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.78  E-value=0.081  Score=39.17  Aligned_cols=29  Identities=24%  Similarity=0.351  Sum_probs=26.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVS   29 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~   29 (182)
                      +|+|||||..|...+..|.+.+.+|+++.
T Consensus        15 ~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         15 VVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            58999999999999999999888999984

>TIGR02730 carot_isom carotene isomerase

Probab=93.73  E-value=0.087  Score=45.88  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=30.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++.+.+|.+++++..
T Consensus         2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~   34 (493)
T TIGR02730         2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLI   34 (493)
T ss_pred             cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            589999999999999999999999999998754

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=93.63  E-value=0.083  Score=45.47  Aligned_cols=33  Identities=12%  Similarity=0.241  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhcc------CCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGV------AKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~------a~~V~l~~r~~~   33 (182)
                      +|+|||+|.||+-.|..|.+.      ..+|++++.++.
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r   41 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEY   41 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCC
Confidence            599999999999999999975      257999987654

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=93.62  E-value=0.086  Score=45.86  Aligned_cols=33  Identities=15%  Similarity=0.238  Sum_probs=31.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      ||+|+|+|..|+-.|.+|++.+-.|++.++++.
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~   34 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDR   34 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCc
Confidence            799999999999999999999999999998764

>PRK09897 hypothetical protein; Provisional

Probab=93.58  E-value=0.085  Score=46.67  Aligned_cols=32  Identities=13%  Similarity=0.214  Sum_probs=27.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC--eEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~   32 (182)
                      +|+|||+|++|+=+|..|++...  +|+++.++.
T Consensus         3 ~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~   36 (534)
T PRK09897          3 KIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD   36 (534)
T ss_pred             eEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence            59999999999999999987544  799998854

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=93.47  E-value=0.61  Score=38.77  Aligned_cols=83  Identities=23%  Similarity=0.378  Sum_probs=54.5

Q ss_pred             EEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCCC---------------C---CCC---CCCeE--EcceeEEee
Q 037525            2 IILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTYE---------------K---QPG---FDNMW--LHSMIESAH   56 (182)
Q Consensus         2 V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~~---------------~---~~~---~~~i~--~~~~v~~~~   56 (182)
                      ++|||+|..|...|..+.+.  ..+++++.+........               .   .+.   ..++.  ....+.++.
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id   80 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID   80 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence            58999999999999988873  44677666654321100               0   000   01222  234566676


Q ss_pred             C-CCeEEEcCCcEEecCEEEEecccccCCC
Q 037525           57 D-NGAVVFRNGHTVHADVILHCTGYKYHFP   85 (182)
Q Consensus        57 ~-~~~v~~~dg~~~~~D~vi~atG~~~~~~   85 (182)
                      . .+.+.+.+| .+..|.+++|||..+..+
T Consensus        81 ~~~~~v~~~~g-~~~yd~LvlatGa~~~~~  109 (415)
T COG0446          81 PENKVVLLDDG-EIEYDYLVLATGARPRPP  109 (415)
T ss_pred             CCCCEEEECCC-cccccEEEEcCCCcccCC
Confidence            3 346777788 788999999999998754

>PTZ00367 squalene epoxidase; Provisional

Probab=93.40  E-value=0.095  Score=46.72  Aligned_cols=32  Identities=22%  Similarity=0.434  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||..|.=+|..|++.+.+|++++|..
T Consensus        35 dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         35 DVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            58999999999999999999999999999864

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=93.27  E-value=0.11  Score=45.07  Aligned_cols=34  Identities=15%  Similarity=0.251  Sum_probs=30.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~   34 (182)
                      +|+|||+|.+|.-.|..|++.+.+|+++++++..
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~   34 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFI   34 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            6899999999999999999998899999987543

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK08401 L-aspartate oxidase; Provisional

Probab=93.26  E-value=0.11  Score=45.15  Aligned_cols=31  Identities=16%  Similarity=0.248  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|.+|+=.|..+++.+.+|.++.+.
T Consensus         3 DVvVVGaG~AGl~AAi~aae~G~~V~liek~   33 (466)
T PRK08401          3 KVGIVGGGLAGLTAAISLAKKGFDVTIIGPG   33 (466)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5999999999999999999988889998874

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=93.25  E-value=0.12  Score=37.31  Aligned_cols=31  Identities=35%  Similarity=0.462  Sum_probs=29.2

Q ss_pred             EEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            2 IILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         2 V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      |+|+|+|..|.=+|..|++...+|+++.|+.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            7899999999999999999888999999976

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=93.23  E-value=0.11  Score=46.23  Aligned_cols=33  Identities=9%  Similarity=0.244  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+-.|..|++.+.+|+++.+.+.
T Consensus       139 ~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~  171 (564)
T PRK12771        139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPK  171 (564)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            599999999999999999998888999987653

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=93.14  E-value=0.12  Score=45.38  Aligned_cols=32  Identities=9%  Similarity=0.229  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++.+.+|.++.+.+
T Consensus        63 DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~   94 (506)
T PRK06481         63 DIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP   94 (506)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            59999999999999999999888999998754

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.11  E-value=0.12  Score=39.85  Aligned_cols=30  Identities=17%  Similarity=0.216  Sum_probs=27.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r   30 (182)
                      +|+|||||..|.-.+..|.+.+.+|+++.+
T Consensus        12 ~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718         12 RVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            589999999999999999998889999875

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=93.09  E-value=0.12  Score=45.42  Aligned_cols=32  Identities=19%  Similarity=0.429  Sum_probs=28.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~   32 (182)
                      +|+|||||..|+-+|.+|++..  .+|.++++.+
T Consensus        47 DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~   80 (497)
T PTZ00383         47 DVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS   80 (497)
T ss_pred             cEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence            5899999999999999999863  5899998863

>TIGR00136 gidA glucose-inhibited division protein A

Probab=93.08  E-value=0.1  Score=46.77  Aligned_cols=31  Identities=13%  Similarity=0.264  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|.+|++.|..+++.+.+|.++.+.
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~   32 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLN   32 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence            5899999999999999999998899999875

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=93.01  E-value=0.12  Score=45.93  Aligned_cols=32  Identities=13%  Similarity=0.276  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++.+.+|.++.+..
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~   32 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVY   32 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence            59999999999999999999888899988643

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=92.94  E-value=0.11  Score=45.57  Aligned_cols=32  Identities=13%  Similarity=0.213  Sum_probs=28.0

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~   32 (182)
                      +|+|||||..|+-+|.+|++.  ..+|.+++|..
T Consensus         7 DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~   40 (494)
T PRK05257          7 DVVLIGGGIMSATLGTLLKELEPEWSITMFERLD   40 (494)
T ss_pred             eEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            589999999999999999984  56899999753

>PLN02661 Putative thiazole synthesis

Probab=92.86  E-value=0.13  Score=43.25  Aligned_cols=32  Identities=19%  Similarity=0.415  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..|++. +.+|.++.+..
T Consensus        94 DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~  126 (357)
T PLN02661         94 DVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV  126 (357)
T ss_pred             CEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence            589999999999999999974 67899999864

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=92.85  E-value=0.13  Score=45.83  Aligned_cols=32  Identities=13%  Similarity=0.276  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..+++.+.+|.++.+..
T Consensus        11 DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~   42 (574)
T PRK12842         11 DVLVIGSGAGGLSAAITARKLGLDVVVLEKEP   42 (574)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            59999999999999999999888999998754

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=92.75  E-value=0.15  Score=43.90  Aligned_cols=33  Identities=12%  Similarity=0.263  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~~   33 (182)
                      +|+|||||..|+-+|.+|+++.  .+|.++.+...
T Consensus         5 DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~   39 (429)
T COG0579           5 DVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDG   39 (429)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCc
Confidence            5899999999999999999988  78999998653

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=92.64  E-value=0.11  Score=44.91  Aligned_cols=32  Identities=19%  Similarity=0.253  Sum_probs=26.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccC---CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA---KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a---~~V~l~~r~~   32 (182)
                      +|+|||||.+|.=.|..|++..   -+|+|+++..
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~   35 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD   35 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence            5999999999999999999976   6799998864

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=92.63  E-value=0.15  Score=44.74  Aligned_cols=31  Identities=23%  Similarity=0.189  Sum_probs=28.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+| +|+=.|.++++.+.+|.++.+.+
T Consensus         9 DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~   39 (513)
T PRK12837          9 DVLVAGSG-GGVAGAYTAAREGLSVALVEATD   39 (513)
T ss_pred             CEEEECch-HHHHHHHHHHHCCCcEEEEecCC
Confidence            59999999 99999999999888999998654

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=92.60  E-value=0.16  Score=45.04  Aligned_cols=32  Identities=25%  Similarity=0.383  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++.+.+|.++.+.+
T Consensus         6 DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          6 DVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            59999999999999999999888999998765

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=92.53  E-value=0.19  Score=42.72  Aligned_cols=31  Identities=26%  Similarity=0.493  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|.|||+|-.|.-+|..|++.+++|++++|.
T Consensus        47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   47 DVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            4899999999999999999999999999995

>PLN02529 lysine-specific histone demethylase 1

Probab=92.51  E-value=0.16  Score=46.68  Aligned_cols=32  Identities=19%  Similarity=0.325  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+..|..|++.+.+|+++..++
T Consensus       162 ~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~  193 (738)
T PLN02529        162 SVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN  193 (738)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcEEEEecCc
Confidence            58999999999999999999988999988653

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=92.38  E-value=0.16  Score=44.52  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=28.1

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r   30 (182)
                      +|+|||||..|+-+|..|++.  ..+|.+++|
T Consensus         8 DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr   39 (497)
T PRK13339          8 DVVLVGAGILSTTFGVLLKELDPDWNIEVVER   39 (497)
T ss_pred             CEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence            589999999999999999998  678999999

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=92.34  E-value=0.16  Score=46.83  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~   33 (182)
                      +|+|||||++|+=.|..|++.  ..+|+++.+.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            699999999999999999987  679999998764

>PLN02676 polyamine oxidase

Probab=92.31  E-value=0.17  Score=44.17  Aligned_cols=33  Identities=15%  Similarity=0.378  Sum_probs=28.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++.+. +|.++.+++.
T Consensus        28 ~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~   61 (487)
T PLN02676         28 SVIIVGAGMSGISAAKTLSEAGIEDILILEATDR   61 (487)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCC
Confidence            58999999999999999999875 5888887653

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.27  E-value=0.18  Score=43.69  Aligned_cols=33  Identities=9%  Similarity=0.215  Sum_probs=27.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC---eEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK---EVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~---~V~l~~r~~~   33 (182)
                      +|+|||+|.||+.+|.+|.+..+   .|.++.+++.
T Consensus         3 ~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~   38 (474)
T COG4529           3 KVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN   38 (474)
T ss_pred             eEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence            69999999999999999998533   3888887654

>PLN02568 polyamine oxidase

Probab=92.26  E-value=0.19  Score=44.54  Aligned_cols=33  Identities=15%  Similarity=0.266  Sum_probs=28.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-----CeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-----KEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-----~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++..     .+|+++.++..
T Consensus         7 ~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~   44 (539)
T PLN02568          7 RIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDR   44 (539)
T ss_pred             cEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCC
Confidence            5999999999999999999865     67999987653

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=92.26  E-value=0.17  Score=43.72  Aligned_cols=33  Identities=18%  Similarity=0.157  Sum_probs=30.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|..+.=+|..|++.+++|.++.|++.
T Consensus         6 DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~   38 (443)
T PTZ00363          6 DVIVCGTGLKECILSGLLSVNGKKVLHMDRNPY   38 (443)
T ss_pred             eEEEECCChHHHHHHhhhhhCCCEEEEecCCCC
Confidence            489999999999999999999999999999764

>PLN02487 zeta-carotene desaturase

Probab=92.21  E-value=0.19  Score=44.87  Aligned_cols=34  Identities=12%  Similarity=0.210  Sum_probs=30.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~   34 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++++++..
T Consensus        77 ~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~  110 (569)
T PLN02487         77 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFI  110 (569)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCC
Confidence            5899999999999999999999999999987643

>PRK02106 choline dehydrogenase; Validated

Probab=92.14  E-value=0.18  Score=44.72  Aligned_cols=32  Identities=16%  Similarity=0.233  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhc-cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG-VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~-~a~~V~l~~r~~   32 (182)
                      +++|||+|.+|.=+|..|++ ...+|.++++++
T Consensus         7 D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          7 DYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            48999999999999999999 677899998874

>PRK07804 L-aspartate oxidase; Provisional

Probab=92.07  E-value=0.2  Score=44.35  Aligned_cols=32  Identities=16%  Similarity=0.329  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++...+|.++.+..
T Consensus        18 DVlVIG~G~AGl~AAi~aae~G~~VilleK~~   49 (541)
T PRK07804         18 DVVVVGSGVAGLTAALAARRAGRRVLVVTKAA   49 (541)
T ss_pred             CEEEECccHHHHHHHHHHHHcCCeEEEEEccC
Confidence            59999999999999999999877899988754

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=92.01  E-value=0.21  Score=39.23  Aligned_cols=31  Identities=13%  Similarity=0.209  Sum_probs=27.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||||..|.-=+..|.+.+.+|+++...
T Consensus        27 ~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~   57 (223)
T PRK05562         27 KVLIIGGGKAAFIKGKTFLKKGCYVYILSKK   57 (223)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5999999999999999999988899999764

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.99  E-value=0.18  Score=45.41  Aligned_cols=32  Identities=13%  Similarity=0.300  Sum_probs=28.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++.+.+|.++.+..
T Consensus        10 DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~   41 (626)
T PRK07803         10 DVVVIGAGGAGLRAAIEARERGLRVAVVCKSL   41 (626)
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            59999999999999999999888899988753

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=91.91  E-value=0.23  Score=35.61  Aligned_cols=32  Identities=28%  Similarity=0.558  Sum_probs=27.9

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~   32 (182)
                      +|+|||+|-.|.-++..|+.. +++|+++.|..
T Consensus        14 ~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   14 RVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            589999999999999999985 45699998853

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=91.90  E-value=0.2  Score=44.52  Aligned_cols=32  Identities=19%  Similarity=0.207  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..+++.+.+|.++.+..
T Consensus         8 DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~   39 (557)
T PRK12844          8 DVVVVGSGGGGMCAALAAADSGLEPLIVEKQD   39 (557)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            58999999999999999999988999998753

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=91.84  E-value=0.62  Score=40.11  Aligned_cols=39  Identities=21%  Similarity=0.360  Sum_probs=29.5

Q ss_pred             eeEEeeC-CCeEEEcCCcEEecCEEEEecccccC-CCCCCC
Q 037525           51 MIESAHD-NGAVVFRNGHTVHADVILHCTGYKYH-FPFLET   89 (182)
Q Consensus        51 ~v~~~~~-~~~v~~~dg~~~~~D~vi~atG~~~~-~~~l~~   89 (182)
                      ++..+++ ++.|++.||++|..|-.++|||-+|. .+.+++
T Consensus       279 kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~  319 (659)
T KOG1346|consen  279 KVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEE  319 (659)
T ss_pred             ceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhh
Confidence            3445553 45789999999999999999999985 344443

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=91.84  E-value=0.21  Score=44.86  Aligned_cols=32  Identities=13%  Similarity=0.217  Sum_probs=28.2

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++.  +.+|.++.+..
T Consensus        13 DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~   46 (608)
T PRK06854         13 DILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKAN   46 (608)
T ss_pred             CEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            599999999999999999987  67899988753

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=91.84  E-value=0.2  Score=44.75  Aligned_cols=32  Identities=19%  Similarity=0.285  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..+++.+.+|.++.+..
T Consensus        13 DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~   44 (584)
T PRK12835         13 DVLVVGSGGGGMTAALTAAARGLDTLVVEKSA   44 (584)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEEcCC
Confidence            59999999999999999999988999998754

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.71  E-value=0.22  Score=44.59  Aligned_cols=31  Identities=23%  Similarity=0.370  Sum_probs=28.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|.+|+=.|.++++.+.+|.++.+.
T Consensus        14 DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~   44 (591)
T PRK07057         14 DVVIVGAGGSGMRASLQLARAGLSVAVLSKV   44 (591)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            5999999999999999999987789998875

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=91.70  E-value=0.21  Score=45.32  Aligned_cols=32  Identities=9%  Similarity=0.135  Sum_probs=28.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|.++++.+.+|.++.+.+
T Consensus         7 DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~   38 (657)
T PRK08626          7 DALVIGAGLAGLRVAIAAAQRGLDTIVLSLVP   38 (657)
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            59999999999999999999888899987643

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.66  E-value=0.23  Score=44.28  Aligned_cols=31  Identities=13%  Similarity=0.307  Sum_probs=28.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|.+|+=.|.++++.+.+|.++.+.
T Consensus         7 DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~   37 (566)
T PRK06452          7 DAVVIGGGLAGLMSAHEIASAGFKVAVISKV   37 (566)
T ss_pred             cEEEECccHHHHHHHHHHHHCCCcEEEEEcc
Confidence            5999999999999999999988889998865

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=91.65  E-value=0.23  Score=46.08  Aligned_cols=32  Identities=16%  Similarity=0.306  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|.+.+.+|+++..+.
T Consensus       240 ~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~  271 (808)
T PLN02328        240 NVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA  271 (808)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            59999999999999999999888899988754

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.64  E-value=0.21  Score=44.66  Aligned_cols=31  Identities=23%  Similarity=0.223  Sum_probs=28.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|.+|+=.|.++++.+.+|.++.+.
T Consensus         5 DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~   35 (589)
T PRK08641          5 KVIVVGGGLAGLMATIKAAEAGVHVDLFSLV   35 (589)
T ss_pred             cEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence            5999999999999999999988889998854

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.58  E-value=0.23  Score=44.54  Aligned_cols=32  Identities=9%  Similarity=0.262  Sum_probs=28.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..+++.+.+|.++.+..
T Consensus        14 DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~   45 (598)
T PRK09078         14 DVVVVGAGGAGLRATLGMAEAGLKTACITKVF   45 (598)
T ss_pred             CEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence            59999999999999999999877899887653

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=91.52  E-value=0.23  Score=42.66  Aligned_cols=31  Identities=19%  Similarity=0.362  Sum_probs=28.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|.+|+-.|..+++.+.+|.++.++
T Consensus         4 DviIIG~G~aGl~aA~~la~~g~~v~vi~~~   34 (422)
T PRK05329          4 DVLVIGGGLAGLTAALAAAEAGKRVALVAKG   34 (422)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence            5899999999999999999999899999875

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=91.50  E-value=0.24  Score=43.05  Aligned_cols=30  Identities=23%  Similarity=0.374  Sum_probs=25.3

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r   30 (182)
                      +|+|||+|++++|++....+. +++|+..++
T Consensus       264 ~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~  294 (457)
T COG0493         264 RVVVIGGGDTAMDCAGTALRLGAKSVTCFYR  294 (457)
T ss_pred             eEEEECCCCCHHHHHHHHhhcCCeEEEEecc
Confidence            589999999999999887775 568888864

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=91.45  E-value=0.22  Score=43.22  Aligned_cols=33  Identities=15%  Similarity=0.374  Sum_probs=30.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|+.|+..|.+|++....|++..|.+.
T Consensus       125 ~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~  157 (457)
T COG0493         125 KVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL  157 (457)
T ss_pred             EEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence            599999999999999999999999999887654

>TIGR00551 nadB L-aspartate oxidase

Probab=91.36  E-value=0.25  Score=43.06  Aligned_cols=31  Identities=23%  Similarity=0.411  Sum_probs=27.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++.+. |.++.+.+
T Consensus         4 DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~   34 (488)
T TIGR00551         4 DVVVIGSGAAGLSAALALADQGR-VIVLSKAP   34 (488)
T ss_pred             cEEEECccHHHHHHHHHHHhCCC-EEEEEccC
Confidence            59999999999999999999876 99888764

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.36  E-value=0.24  Score=44.16  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=27.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccC---CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA---KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a---~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++.+   .+|.++.+..
T Consensus         7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~   41 (577)
T PRK06069          7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQ   41 (577)
T ss_pred             CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEccc
Confidence            5999999999999999999875   5899988654

>TIGR00275 flavoprotein, HI0933 family

Probab=91.32  E-value=0.16  Score=43.13  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=27.7

Q ss_pred             EEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            3 ILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         3 ~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|||+|++|+=.|..+++.+.+|.++++.+
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~   30 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK   30 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCc
Confidence            599999999999999999988999999865

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=91.30  E-value=0.22  Score=36.54  Aligned_cols=30  Identities=20%  Similarity=0.308  Sum_probs=25.6

Q ss_pred             EEEcCCccHHHHHHHHhccC-----CeEEEEeccC
Q 037525            3 ILVGSSASAVDICRDLAGVA-----KEVHLVSRSV   32 (182)
Q Consensus         3 ~VVG~G~sg~d~A~~l~~~a-----~~V~l~~r~~   32 (182)
                      +|||+|++|+=++..|.+.+     .+|+++.+.+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~   35 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP   35 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence            59999999999999999974     3688888744

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.18  E-value=0.26  Score=44.60  Aligned_cols=30  Identities=17%  Similarity=0.302  Sum_probs=27.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r   30 (182)
                      +|+|||+|.+|+=.|..+++.+.+|.++..
T Consensus        37 DVlVVG~G~AGl~AAi~Aae~G~~VilieK   66 (640)
T PRK07573         37 DVIVVGTGLAGASAAATLGELGYNVKVFCY   66 (640)
T ss_pred             CEEEECccHHHHHHHHHHHHcCCcEEEEec
Confidence            599999999999999999998778999875

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=91.17  E-value=0.27  Score=44.33  Aligned_cols=32  Identities=13%  Similarity=0.234  Sum_probs=28.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|.++++.+.+|.++.+..
T Consensus        31 DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~   62 (617)
T PTZ00139         31 DAVVVGAGGAGLRAALGLVELGYKTACISKLF   62 (617)
T ss_pred             CEEEECccHHHHHHHHHHHHcCCcEEEEeccC
Confidence            59999999999999999999877899988754

>PRK04148 hypothetical protein; Provisional

Probab=90.99  E-value=0.26  Score=35.58  Aligned_cols=32  Identities=13%  Similarity=0.174  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|++||.| +|.++|..|++.+.+|+.+..++.
T Consensus        19 kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         19 KIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             EEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            48999999 999999999999989999887653

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=90.93  E-value=0.22  Score=44.72  Aligned_cols=31  Identities=26%  Similarity=0.274  Sum_probs=27.9

Q ss_pred             EEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            2 IILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         2 V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      |+|||+|.+|+=.|..+++.+.+|.++.+..
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence            7999999999999999999888899988654

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK08275 putative oxidoreductase; Provisional

Probab=90.93  E-value=0.3  Score=43.31  Aligned_cols=32  Identities=16%  Similarity=0.177  Sum_probs=27.4

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++.  ..+|.++.+..
T Consensus        11 DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~   44 (554)
T PRK08275         11 DILVIGGGTAGPMAAIKAKERNPALRVLLLEKAN   44 (554)
T ss_pred             CEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            599999999999999999975  45899988754

>PLN02612 phytoene desaturase

Probab=90.90  E-value=0.33  Score=43.22  Aligned_cols=33  Identities=12%  Similarity=0.257  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++...+|+++.+++.
T Consensus        95 ~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~  127 (567)
T PLN02612         95 KVVIAGAGLAGLSTAKYLADAGHKPILLEARDV  127 (567)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCeEEEEecCCC
Confidence            589999999999999999999999999988653

>PLN03000 amine oxidase

Probab=90.88  E-value=0.31  Score=45.55  Aligned_cols=32  Identities=19%  Similarity=0.341  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+..|..|.+...+|++++.++
T Consensus       186 ~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~  217 (881)
T PLN03000        186 SVVIVGAGLSGLAAARQLMRFGFKVTVLEGRK  217 (881)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence            58999999999999999999888999998764

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=90.79  E-value=0.3  Score=43.38  Aligned_cols=32  Identities=19%  Similarity=0.207  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++.+.+|.++.+.+
T Consensus         9 DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~   40 (557)
T PRK07843          9 DVVVVGSGAAGMVAALTAAHRGLSTVVVEKAP   40 (557)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            58999999999999999999988999998754

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=90.73  E-value=0.31  Score=39.33  Aligned_cols=32  Identities=28%  Similarity=0.295  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|+.|.-+|..|++.+.+|+++.|++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            58999999999999999999888999999853

>PRK13984 putative oxidoreductase; Provisional

Probab=90.69  E-value=0.3  Score=43.67  Aligned_cols=33  Identities=21%  Similarity=0.232  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|+.|+..|..|.+.+.+|+++.+.+.
T Consensus       285 ~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~  317 (604)
T PRK13984        285 KVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK  317 (604)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            589999999999999999999989999987653

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.68  E-value=0.32  Score=43.56  Aligned_cols=32  Identities=9%  Similarity=0.286  Sum_probs=28.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|.++++.+.+|.|+.+..
T Consensus         9 DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~   40 (588)
T PRK08958          9 DAVVIGAGGAGMRAALQISQSGQSCALLSKVF   40 (588)
T ss_pred             CEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence            59999999999999999999888899988753

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=90.65  E-value=0.37  Score=43.05  Aligned_cols=32  Identities=19%  Similarity=0.251  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|.++++.+.+|.++.+.+
T Consensus        14 dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~   45 (581)
T PRK06134         14 DVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDP   45 (581)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            58999999999999999999988999998754

>TIGR02462 pyranose_ox pyranose oxidase

Probab=90.63  E-value=0.35  Score=42.94  Aligned_cols=33  Identities=18%  Similarity=0.211  Sum_probs=30.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|.=.|..|++...+|.++.++..
T Consensus         2 dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~   34 (544)
T TIGR02462         2 DVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAA   34 (544)
T ss_pred             cEEEECCchHHHHHHHHHHHCCCeEEEEeccCc
Confidence            589999999999999999999899999998753

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>TIGR01810 betA choline dehydrogenase

Probab=90.61  E-value=0.38  Score=42.39  Aligned_cols=32  Identities=13%  Similarity=0.198  Sum_probs=28.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +++|||+|.+|.=+|..|++.. .+|.+++.++
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~   33 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG   33 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence            5899999999999999999977 4899998764

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.61  E-value=0.29  Score=39.70  Aligned_cols=33  Identities=15%  Similarity=0.159  Sum_probs=30.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|.|||+|..|..+|..++..+.+|++..+.+.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            589999999999999999999999999988653

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=90.41  E-value=0.35  Score=43.74  Aligned_cols=32  Identities=9%  Similarity=0.180  Sum_probs=28.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|.++++.+.+|.++....
T Consensus        52 DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~   83 (635)
T PLN00128         52 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLF   83 (635)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCcEEEEEcCC
Confidence            59999999999999999999877899988754

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.38  E-value=0.33  Score=39.25  Aligned_cols=32  Identities=16%  Similarity=0.074  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.-|..+|..++..+.+|++..+.+
T Consensus         5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            58999999999999999999888999998764

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=90.38  E-value=0.35  Score=41.86  Aligned_cols=32  Identities=19%  Similarity=0.263  Sum_probs=28.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~   32 (182)
                      +|+|||||.||+-.|-.|++..  .+|++++..+
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~   35 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADD   35 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            5899999999999999999988  6788888764

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=90.32  E-value=0.42  Score=31.38  Aligned_cols=30  Identities=27%  Similarity=0.436  Sum_probs=27.0

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r   30 (182)
                      +++|+|.|..|.-++..|.+. ..+|+++.|
T Consensus        25 ~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          25 TVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            589999999999999999997 778988877

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=90.25  E-value=3.7  Score=35.38  Aligned_cols=82  Identities=15%  Similarity=0.031  Sum_probs=49.6

Q ss_pred             EEEcCCccHHHHH-HHHh----ccCCeEEEEeccCCCCCC--------CCCCCC-CCeEEcceeEEeeC-CCeEE---Ec
Q 037525            3 ILVGSSASAVDIC-RDLA----GVAKEVHLVSRSVADGTY--------EKQPGF-DNMWLHSMIESAHD-NGAVV---FR   64 (182)
Q Consensus         3 ~VVG~G~sg~d~A-~~l~----~~a~~V~l~~r~~~~~~~--------~~~~~~-~~i~~~~~v~~~~~-~~~v~---~~   64 (182)
                      +|++.|..|+|.+ ..++    +.+.+|+++.+.++....        ..+... .++.....|.++.. ++++.   ..
T Consensus       219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~  298 (422)
T PRK05329        219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTR  298 (422)
T ss_pred             EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEee
Confidence            5889999999998 4443    357789999776653210        001111 13445566766652 22332   23


Q ss_pred             CCc--EEecCEEEEecccccCC
Q 037525           65 NGH--TVHADVILHCTGYKYHF   84 (182)
Q Consensus        65 dg~--~~~~D~vi~atG~~~~~   84 (182)
                      +|+  .+++|.||+|||...+.
T Consensus       299 ~g~~~~i~AD~VVLAtGrf~s~  320 (422)
T PRK05329        299 NHGDIPLRARHFVLATGSFFSG  320 (422)
T ss_pred             CCceEEEECCEEEEeCCCcccC
Confidence            453  36899999999976553

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.24  E-value=0.34  Score=43.20  Aligned_cols=32  Identities=13%  Similarity=0.333  Sum_probs=27.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|.++++..  .+|.++.+..
T Consensus         5 DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~   38 (575)
T PRK05945          5 DVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTH   38 (575)
T ss_pred             cEEEECccHHHHHHHHHHHHhcCCCcEEEEeccC
Confidence            5999999999999999999753  5899988754

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=90.22  E-value=0.45  Score=35.23  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=29.5

Q ss_pred             EEEEcC-CccHHHHHHHHhccCCeEEEEeccCC
Q 037525            2 IILVGS-SASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         2 V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      |+|+|+ |..|..++.+|.+...+|+.+.|++.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~   33 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPS   33 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence            799997 99999999999999999999999754

...

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.97  E-value=0.38  Score=41.26  Aligned_cols=32  Identities=19%  Similarity=0.347  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|.+|..+|..|++.+.+|+++.+..
T Consensus         7 ~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          7 KVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            58999999999999999999999999998864

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.90  E-value=0.38  Score=41.43  Aligned_cols=32  Identities=22%  Similarity=0.250  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||.|.||+-.|..|.+.+.+|+++.++.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~   33 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND   33 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            58999999999999999999999999998754

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=89.89  E-value=0.41  Score=39.16  Aligned_cols=32  Identities=19%  Similarity=0.158  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|..|.=+|..|++.+.+|+++.|+.
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            68999999999999999999888999999964

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=89.80  E-value=0.45  Score=42.88  Aligned_cols=31  Identities=13%  Similarity=0.260  Sum_probs=26.7

Q ss_pred             CEEEEcCCccHHHHHHHHh----ccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLA----GVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~----~~a~~V~l~~r~   31 (182)
                      .|+|||+|.+|+=.|+.++    +.+.+|.++.+.
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~   35 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKA   35 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEcc
Confidence            5999999999999999998    556689988764

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=89.71  E-value=0.41  Score=38.72  Aligned_cols=30  Identities=23%  Similarity=0.328  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r   30 (182)
                      +|+|+|+|..|.-+|..|++.+.+|+++.|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            589999999999999999998889999988

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=89.63  E-value=0.42  Score=42.70  Aligned_cols=31  Identities=6%  Similarity=0.222  Sum_probs=27.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|.++++. .+|.++.+..
T Consensus         7 DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~   37 (583)
T PRK08205          7 DVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLY   37 (583)
T ss_pred             cEEEECccHHHHHHHHHHHhC-CCEEEEeCCC
Confidence            599999999999999999987 6899988753

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=89.61  E-value=0.54  Score=38.22  Aligned_cols=32  Identities=19%  Similarity=0.337  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      .|+|||+|..|+-.|..|...+.+|+++.++.
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~   34 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR   34 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence            38999999999999999999999999999864

>PLN02815 L-aspartate oxidase

Probab=89.59  E-value=0.43  Score=42.86  Aligned_cols=31  Identities=13%  Similarity=0.341  Sum_probs=27.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++.+ +|.++.+..
T Consensus        31 DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~   61 (594)
T PLN02815         31 DFLVIGSGIAGLRYALEVAEYG-TVAIITKDE   61 (594)
T ss_pred             CEEEECccHHHHHHHHHHhhCC-CEEEEECCC
Confidence            5999999999999999999988 788887654

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=89.50  E-value=0.52  Score=33.57  Aligned_cols=31  Identities=16%  Similarity=0.470  Sum_probs=27.0

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~   31 (182)
                      +|+|+|.|..|.++|..|++. ..+++++...
T Consensus         4 ~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    4 RVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             EEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            589999999999999999995 4578888764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=89.43  E-value=0.5  Score=32.41  Aligned_cols=31  Identities=16%  Similarity=0.352  Sum_probs=26.5

Q ss_pred             EEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            2 IILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         2 V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      |+|+|.|..|..++..|.+...+|.++.+.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            7899999999999999999666899998754

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK07395 L-aspartate oxidase; Provisional

Probab=89.38  E-value=0.45  Score=42.29  Aligned_cols=31  Identities=23%  Similarity=0.331  Sum_probs=26.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|.++++ ..+|.++.+..
T Consensus        11 DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~   41 (553)
T PRK07395         11 DVLVVGSGAAGLYAALCLPS-HLRVGLITKDT   41 (553)
T ss_pred             CEEEECccHHHHHHHHHhhc-CCCEEEEEccC
Confidence            59999999999999999876 55899988754

>PRK09077 L-aspartate oxidase; Provisional

Probab=89.38  E-value=0.41  Score=42.29  Aligned_cols=31  Identities=23%  Similarity=0.448  Sum_probs=27.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++. .+|.++.+..
T Consensus        10 DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~   40 (536)
T PRK09077         10 DVLIIGSGAAGLSLALRLAEH-RRVAVLSKGP   40 (536)
T ss_pred             CEEEECchHHHHHHHHHHHHC-CCEEEEeccC
Confidence            599999999999999999987 5798887754

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.35  E-value=0.45  Score=39.42  Aligned_cols=32  Identities=9%  Similarity=0.005  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|..|..+|..++..+.+|++..+.+
T Consensus         9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            58999999999999999999999999998754

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=89.34  E-value=0.57  Score=39.95  Aligned_cols=34  Identities=12%  Similarity=0.190  Sum_probs=30.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~   34 (182)
                      +|+|||||.+|.-.|+.|.+.+=+|.+...+...
T Consensus         4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    4 KVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             cEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            5999999999999999999999889988876543

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=89.32  E-value=0.42  Score=31.66  Aligned_cols=31  Identities=32%  Similarity=0.441  Sum_probs=26.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccC---CeEEEE-ecc
Q 037525            1 VIILVGSSASAVDICRDLAGVA---KEVHLV-SRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a---~~V~l~-~r~   31 (182)
                      +|.|||+|+-|.-++.-|.+..   .+|+++ .|+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~   35 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS   35 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc
Confidence            5889999999999999999988   789877 453

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.20  E-value=0.4  Score=38.78  Aligned_cols=32  Identities=19%  Similarity=0.183  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|..|..+|..|++.+.+|++..+.+
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            58999999999999999999888999998764

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=89.17  E-value=0.63  Score=40.29  Aligned_cols=74  Identities=18%  Similarity=0.235  Sum_probs=49.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCCCCCeEEcceeEEeeCCCeEEEcCCc-----EEecCEEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRNGH-----TVHADVIL   75 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~~~~i~~~~~v~~~~~~~~v~~~dg~-----~~~~D~vi   75 (182)
                      +|+|+|-|-||.-+|..|.+.+.+|+++..++........             .... .++.+..|+     ..++|.||
T Consensus         9 kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~-------------~~~~-~~i~~~~g~~~~~~~~~~d~vV   74 (448)
T COG0771           9 KVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQ-------------PLLL-EGIEVELGSHDDEDLAEFDLVV   74 (448)
T ss_pred             EEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhh-------------hhhc-cCceeecCccchhccccCCEEE
Confidence            5899999999999999999999999999865432111000             0001 122222221     23589999


Q ss_pred             EecccccCCCCCC
Q 037525           76 HCTGYKYHFPFLE   88 (182)
Q Consensus        76 ~atG~~~~~~~l~   88 (182)
                      .+-|..++.|.+.
T Consensus        75 ~SPGi~~~~p~v~   87 (448)
T COG0771          75 KSPGIPPTHPLVE   87 (448)
T ss_pred             ECCCCCCCCHHHH
Confidence            9999988877543

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=89.16  E-value=0.46  Score=42.02  Aligned_cols=31  Identities=19%  Similarity=0.381  Sum_probs=26.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+ +.+.+|.++.+..
T Consensus         9 DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~   39 (543)
T PRK06263          9 DVLIIGSGGAGARAAIEA-ERGKNVVIVSKGL   39 (543)
T ss_pred             CEEEECccHHHHHHHHHH-hcCCCEEEEEccC
Confidence            599999999999999999 7677899988753

>PLN02785 Protein HOTHEAD

Probab=89.10  E-value=0.51  Score=42.29  Aligned_cols=31  Identities=23%  Similarity=0.294  Sum_probs=28.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +++|||+|.+|+=+|..|++ ..+|.++++++
T Consensus        57 D~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~   87 (587)
T PLN02785         57 DYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG   87 (587)
T ss_pred             CEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence            48999999999999999999 57899998875

>PRK06175 L-aspartate oxidase; Provisional

Probab=89.01  E-value=0.46  Score=40.83  Aligned_cols=31  Identities=19%  Similarity=0.317  Sum_probs=26.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+. .+.+|.++.+.+
T Consensus         6 DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~   36 (433)
T PRK06175          6 DVLIVGSGVAGLYSALNLR-KDLKILMVSKGK   36 (433)
T ss_pred             cEEEECchHHHHHHHHHhc-cCCCEEEEecCC
Confidence            5999999999999999975 456899988754

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=88.96  E-value=0.54  Score=39.22  Aligned_cols=32  Identities=16%  Similarity=0.275  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      .|+|||||..|+-.+..+.+.+|++.++.++.
T Consensus         4 Dv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ   35 (421)
T COG3075           4 DVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ   35 (421)
T ss_pred             cEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence            48999999999999999999999999988865

>PRK08071 L-aspartate oxidase; Provisional

Probab=88.83  E-value=0.5  Score=41.50  Aligned_cols=31  Identities=19%  Similarity=0.497  Sum_probs=26.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|.++++ ..+|.++.+..
T Consensus         5 DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~   35 (510)
T PRK08071          5 DVIIIGSGIAALTVAKELCH-EYNVIIITKKT   35 (510)
T ss_pred             CEEEECccHHHHHHHHHhhc-CCCEEEEeccC
Confidence            59999999999999999987 56899888754

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=88.75  E-value=0.51  Score=42.14  Aligned_cols=32  Identities=9%  Similarity=0.132  Sum_probs=28.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccC----CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA----KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a----~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+    .+|+++.+.+
T Consensus        24 ~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~   59 (576)
T PRK13977         24 KAYIIGSGLASLAAAVFLIRDGQMPGENITILEELD   59 (576)
T ss_pred             eEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCC
Confidence            5899999999999999999864    5899998865

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.75  E-value=0.48  Score=38.36  Aligned_cols=32  Identities=19%  Similarity=0.114  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|.-|..+|..++..+.+|++..+.+
T Consensus         6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            58999999999999999999988999998764

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=88.74  E-value=0.66  Score=34.76  Aligned_cols=31  Identities=16%  Similarity=0.195  Sum_probs=26.1

Q ss_pred             CEEEEcCCcc-HHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSAS-AVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~s-g~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|.. |.-+|..|.+...+|+++.|.
T Consensus        46 ~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          46 KVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             EEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            5899999985 888999999877689888874

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=88.69  E-value=0.53  Score=44.27  Aligned_cols=32  Identities=13%  Similarity=0.217  Sum_probs=28.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|.++++.+.+|.++.+..
T Consensus        15 DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~   46 (897)
T PRK13800         15 DVLVIGGGTAGTMAALTAAEHGANVLLLEKAH   46 (897)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            58999999999999999999888899887643

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=88.65  E-value=0.59  Score=38.28  Aligned_cols=32  Identities=28%  Similarity=0.204  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|..|.=+|..|++.+.+|+++.|+.
T Consensus         7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            58999999999999999999888999999865

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=88.58  E-value=0.65  Score=41.41  Aligned_cols=31  Identities=19%  Similarity=0.292  Sum_probs=28.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+| +|+-.|...++.+.+|.++.+.+
T Consensus        18 DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~   48 (564)
T PRK12845         18 DLLVVGSG-TGMAAALAAHELGLSVLIVEKSS   48 (564)
T ss_pred             CEEEECCc-HHHHHHHHHHHCCCcEEEEecCC
Confidence            58999999 89999999999888999999864

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=88.54  E-value=0.56  Score=36.75  Aligned_cols=32  Identities=25%  Similarity=0.474  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +++|||+|.-|..+|..|++.+..|.++.+.+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            58999999999999999999999999998864

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=88.53  E-value=0.5  Score=38.24  Aligned_cols=32  Identities=31%  Similarity=0.322  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|..|..+|..++..+.+|+++.+.+
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            58999999999999999999888999998764

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=88.36  E-value=0.7  Score=40.99  Aligned_cols=32  Identities=16%  Similarity=0.229  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +++|||+|..|.-+|..|++...+|.++++++
T Consensus         9 D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           9 DYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             CEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            48999999999999999998888999999884

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=88.33  E-value=2.6  Score=36.35  Aligned_cols=34  Identities=21%  Similarity=0.255  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~   34 (182)
                      +|+|+|.|=.|+-++..|-..--.|+++..+..+
T Consensus        57 ~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyF   90 (491)
T KOG2495|consen   57 RVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYF   90 (491)
T ss_pred             eEEEEcCchHHHHHHHhccccccceEEeccccce
Confidence            6999999999999999988877789998877654

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=88.30  E-value=0.52  Score=38.52  Aligned_cols=32  Identities=16%  Similarity=0.170  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|..|.-+|..|+..+.+|++..|.+
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            58999999999999999999988999998864

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=88.30  E-value=0.61  Score=41.63  Aligned_cols=32  Identities=25%  Similarity=0.273  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..+++...+|.++.+.+
T Consensus        18 dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~   49 (578)
T PRK12843         18 DVIVIGAGAAGMSAALFAAIAGLKVLLVERTE   49 (578)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            58999999999999999999888999998753

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=88.19  E-value=0.58  Score=41.85  Aligned_cols=32  Identities=13%  Similarity=0.264  Sum_probs=27.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++.+  .+|.|+.+..
T Consensus         6 DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~   39 (582)
T PRK09231          6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY   39 (582)
T ss_pred             eEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence            5999999999999999999753  4799988754

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=88.07  E-value=0.7  Score=37.31  Aligned_cols=32  Identities=19%  Similarity=0.169  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|+|||.|-.|.++|..|++.+ .+++++....
T Consensus        32 ~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         32 HICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            6999999999999999999976 7899998653

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=88.06  E-value=0.52  Score=40.48  Aligned_cols=31  Identities=26%  Similarity=0.316  Sum_probs=25.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeE--EEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEV--HLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V--~l~~r~   31 (182)
                      +|+|||||.||.-+|-.|++...++  ++.+..
T Consensus        13 ~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~   45 (491)
T KOG1276|consen   13 TVAVVGGGISGLCAAYYLARLGPDVTITLFEAS   45 (491)
T ss_pred             eEEEECCchhHHHHHHHHHhcCCCceEEEEecC
Confidence            5899999999999999999976554  445543

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=87.78  E-value=1.1  Score=32.76  Aligned_cols=31  Identities=26%  Similarity=0.488  Sum_probs=22.8

Q ss_pred             ceeEEeeC--CC-eEEEcCCcEEecCEEEEeccc
Q 037525           50 SMIESAHD--NG-AVVFRNGHTVHADVILHCTGY   80 (182)
Q Consensus        50 ~~v~~~~~--~~-~v~~~dg~~~~~D~vi~atG~   80 (182)
                      ..|..+..  ++ .+++.||..+.+|.||+|||.
T Consensus       122 ~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  122 AEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             eEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence            45555542  22 477789989999999999995

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=87.59  E-value=0.82  Score=35.19  Aligned_cols=31  Identities=16%  Similarity=0.253  Sum_probs=27.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~   31 (182)
                      +|+|||+|-.|.++|..|++.+- +++++.+.
T Consensus        23 ~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        23 TVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            69999999999999999999765 68888775

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=87.39  E-value=0.71  Score=44.73  Aligned_cols=32  Identities=19%  Similarity=0.337  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|.+.++.+.+|.++.+.+
T Consensus       411 DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~  442 (1167)
T PTZ00306        411 RVIVVGGGLAGCSAAIEAASCGAQVILLEKEA  442 (1167)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEccC
Confidence            59999999999999999999888999988753

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=87.39  E-value=0.67  Score=37.58  Aligned_cols=32  Identities=19%  Similarity=0.223  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|.-|..+|..++..+.+|++..+++
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            48999999999999999999988999998764

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=87.32  E-value=0.81  Score=35.57  Aligned_cols=32  Identities=25%  Similarity=0.360  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||..|.-=|..|.+.+.+|+++....
T Consensus        14 ~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~   45 (210)
T COG1648          14 KVLVVGGGSVALRKARLLLKAGADVTVVSPEF   45 (210)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            58999999999999999999999999987643

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=87.31  E-value=0.68  Score=41.41  Aligned_cols=32  Identities=19%  Similarity=0.285  Sum_probs=27.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++..  .+|.++.+..
T Consensus         5 DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~   38 (580)
T TIGR01176         5 DIAVIGAGGAGLRAAIAAAEANPHLDVALISKVY   38 (580)
T ss_pred             eEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence            5899999999999999998753  4799988754

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=87.30  E-value=1.5  Score=36.09  Aligned_cols=32  Identities=25%  Similarity=0.337  Sum_probs=27.2

Q ss_pred             CEEEEcC-CccHHHHHHHHhcc--CCeEEEEeccC
Q 037525            1 VIILVGS-SASAVDICRDLAGV--AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~--a~~V~l~~r~~   32 (182)
                      +|.|+|+ |..|..+|..|+..  ..+|.++.+..
T Consensus         2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~   36 (309)
T cd05294           2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPK   36 (309)
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc
Confidence            5899998 99999999999985  44699998843

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=87.27  E-value=0.87  Score=40.64  Aligned_cols=33  Identities=15%  Similarity=0.327  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+=.|.++++...+|.++.+-.+
T Consensus         8 DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~   40 (562)
T COG1053           8 DVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP   40 (562)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence            589999999999999999999999999887543

>PRK12839 hypothetical protein; Provisional

Probab=87.24  E-value=0.84  Score=40.77  Aligned_cols=32  Identities=22%  Similarity=0.268  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++...+|.++.+..
T Consensus        10 dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~   41 (572)
T PRK12839         10 DVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAS   41 (572)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            58999999999999999999888899998753

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=87.10  E-value=0.83  Score=34.59  Aligned_cols=32  Identities=22%  Similarity=0.264  Sum_probs=28.0

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+ |..|..++..|++.+.+|+++.|..
T Consensus        30 ~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~   62 (194)
T cd01078          30 TAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL   62 (194)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4899997 9999999999999888999988753

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=87.05  E-value=0.67  Score=38.96  Aligned_cols=29  Identities=24%  Similarity=0.286  Sum_probs=25.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r   30 (182)
                      +|+|||+|-||.-.|-.|++.. +|+|.+-
T Consensus        10 ~IAVIGsGisGLSAA~~Ls~rh-dVTLfEA   38 (447)
T COG2907          10 KIAVIGSGISGLSAAWLLSRRH-DVTLFEA   38 (447)
T ss_pred             ceEEEcccchhhhhHHhhhccc-ceEEEec
Confidence            5899999999999999999876 4887764

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=86.96  E-value=1  Score=32.24  Aligned_cols=31  Identities=23%  Similarity=0.367  Sum_probs=27.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~   31 (182)
                      +|+|||.|-.|.++|..|++.+ .+++++...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            6999999999999999999965 478888764

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=86.94  E-value=0.83  Score=39.25  Aligned_cols=32  Identities=16%  Similarity=0.337  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|.-.|..+++...+|.++.++.
T Consensus         2 Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         2 DVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            58999999999999999999888899998764

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=86.91  E-value=1  Score=38.92  Aligned_cols=33  Identities=15%  Similarity=0.301  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+=.|.+|.+.+-+|.+..-++.
T Consensus         9 ~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r   41 (450)
T COG1231           9 DVIIVGAGLAGLSAAYELKKAGYQVQILEARDR   41 (450)
T ss_pred             cEEEECCchHHHHHHHHHhhcCcEEEEEeccCC
Confidence            589999999999999999999999998875543

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=86.85  E-value=0.83  Score=37.56  Aligned_cols=32  Identities=22%  Similarity=0.262  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|+-|.-+|..|++.+.+|+++.|+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            58999999999999999999988999998854

>PLN02976 amine oxidase

Probab=86.58  E-value=0.84  Score=45.06  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|.+.+.+|+++.+++
T Consensus       695 dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~  726 (1713)
T PLN02976        695 KIIVVGAGPAGLTAARHLQRQGFSVTVLEARS  726 (1713)
T ss_pred             cEEEECchHHHHHHHHHHHHCCCcEEEEeecc
Confidence            58999999999999999999888999998754

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=86.55  E-value=0.97  Score=33.89  Aligned_cols=32  Identities=19%  Similarity=0.194  Sum_probs=28.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|..|..+|..+...+-+|+...|..
T Consensus        38 tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~   69 (178)
T PF02826_consen   38 TVGIIGYGRIGRAVARRLKAFGMRVIGYDRSP   69 (178)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTT-EEEEEESSC
T ss_pred             EEEEEEEcCCcCeEeeeeecCCceeEEecccC
Confidence            58999999999999999999999999888754

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=86.51  E-value=0.84  Score=32.91  Aligned_cols=32  Identities=22%  Similarity=0.489  Sum_probs=27.3

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~   32 (182)
                      +|+|+|+|..|..++..|.+. ..+|++..|..
T Consensus        21 ~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          21 KVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            489999999999999999987 47888887753

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.37  E-value=0.85  Score=37.19  Aligned_cols=32  Identities=16%  Similarity=0.189  Sum_probs=28.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|..|..+|..|++.+.+|+++.+.+
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            58999999999999999999888899988754

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=86.25  E-value=1.1  Score=32.42  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=27.9

Q ss_pred             CEEEEcC-CccHHHHHHHHhc--cCCeEEEEeccC
Q 037525            1 VIILVGS-SASAVDICRDLAG--VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~--~a~~V~l~~r~~   32 (182)
                      +|.|||+ |+.|..+|..|..  .++++.|+.+.+
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            5899999 9999999999987  577899988764

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=86.12  E-value=1  Score=34.24  Aligned_cols=79  Identities=16%  Similarity=0.203  Sum_probs=40.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-C--CCCCCCCCCeEEcceeEEeeCCCeEEEcC-CcE-E-ecCEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-T--YEKQPGFDNMWLHSMIESAHDNGAVVFRN-GHT-V-HADVI   74 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~--~~~~~~~~~i~~~~~v~~~~~~~~v~~~d-g~~-~-~~D~v   74 (182)
                      +|.|||.|..|.-.|..+++.+.+|+.+...+... .  -+..|-+ .-.+...+++....+.+.+.+ .+. + ++|++
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~-E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIY-EPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS--CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhcccccc-ccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            58999999999999999999999999987654310 0  0111110 000111122222123566653 333 3 69999


Q ss_pred             EEeccc
Q 037525           75 LHCTGY   80 (182)
Q Consensus        75 i~atG~   80 (182)
                      |+|.+-
T Consensus        81 ~I~VpT   86 (185)
T PF03721_consen   81 FICVPT   86 (185)
T ss_dssp             EE----
T ss_pred             EEecCC
Confidence            999875

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK07512 L-aspartate oxidase; Provisional

Probab=86.07  E-value=0.82  Score=40.21  Aligned_cols=30  Identities=20%  Similarity=0.245  Sum_probs=25.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|.++++  .+|.++.+..
T Consensus        11 DVlVIG~G~AGl~AAl~Aa~--~~V~lleK~~   40 (513)
T PRK07512         11 RPVIVGGGLAGLMAALKLAP--RPVVVLSPAP   40 (513)
T ss_pred             CEEEECchHHHHHHHHHhCc--CCEEEEECCC
Confidence            59999999999999999984  4788887754

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=85.94  E-value=0.89  Score=37.01  Aligned_cols=32  Identities=19%  Similarity=0.398  Sum_probs=28.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|.|..|..+|..|...+.+|+++.|..
T Consensus       153 ~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       153 NVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             EEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999888999988864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=85.94  E-value=0.91  Score=37.01  Aligned_cols=32  Identities=22%  Similarity=0.264  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|+-|.-+|..|++.+.+|+++.|.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            58999999999999999999888999988854

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.72  E-value=1  Score=38.42  Aligned_cols=32  Identities=22%  Similarity=0.379  Sum_probs=27.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~   32 (182)
                      +|||+|.|+.|+++|..+.+..+ +|=+..|..
T Consensus         3 ~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S   35 (429)
T PF10100_consen    3 NVLIVGTGPVAIQLAVILKKHGNCRVGIVGRES   35 (429)
T ss_pred             ceEEEcCCHHHHHHHHHHHhccCceeeeecCcc
Confidence            69999999999999999998655 688888854

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=85.41  E-value=0.47  Score=41.95  Aligned_cols=32  Identities=19%  Similarity=0.254  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|||||||.+|.-+|++-+..+-+|-|+.+.+
T Consensus        69 DVLIIGGGAtGaGcALDA~TRGLktaLVE~~D  100 (680)
T KOG0042|consen   69 DVLIIGGGATGAGCALDAATRGLKTALVEAGD  100 (680)
T ss_pred             cEEEECCCccCcceeehhhcccceeEEEeccc
Confidence            58999999999999999999999999998865

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.37  E-value=0.89  Score=36.60  Aligned_cols=32  Identities=22%  Similarity=0.161  Sum_probs=28.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|..|..+|..++..+.+|+++.+.+
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            48999999999999999999888899987654

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=85.33  E-value=1.3  Score=33.17  Aligned_cols=31  Identities=19%  Similarity=0.198  Sum_probs=27.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~   31 (182)
                      +|+|||.|-.|.++|..|++.+- +++++...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D   32 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD   32 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            69999999999999999999654 68888765

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=85.31  E-value=1.2  Score=37.39  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      .|+|||+|..|+=.|.||++.+++|.++.-..
T Consensus         7 dvivvgaglaglvaa~elA~aG~~V~ildQEg   38 (552)
T COG3573           7 DVIVVGAGLAGLVAAAELADAGKRVLILDQEG   38 (552)
T ss_pred             cEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence            48999999999999999999999999887543

>PRK00536 speE spermidine synthase; Provisional

Probab=84.96  E-value=1.3  Score=35.74  Aligned_cols=30  Identities=13%  Similarity=0.195  Sum_probs=25.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      ||||||||+=|  .|.|+.++..+|+++.-.+
T Consensus        75 ~VLIiGGGDGg--~~REvLkh~~~v~mVeID~  104 (262)
T PRK00536         75 EVLIVDGFDLE--LAHQLFKYDTHVDFVQADE  104 (262)
T ss_pred             eEEEEcCCchH--HHHHHHCcCCeeEEEECCH
Confidence            69999999987  5899999877899987644

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=84.79  E-value=1.2  Score=35.92  Aligned_cols=32  Identities=25%  Similarity=0.482  Sum_probs=28.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|+|+|+|-.|.-++..|+... .+|+++.|..
T Consensus       125 ~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~  157 (278)
T PRK00258        125 RILILGAGGAARAVILPLLDLGVAEITIVNRTV  157 (278)
T ss_pred             EEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            4899999999999999999876 7899998864

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=84.76  E-value=1.6  Score=33.47  Aligned_cols=31  Identities=16%  Similarity=0.440  Sum_probs=27.0

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~   31 (182)
                      +|+|||.|-.|.|+|..|+.. .++++++...
T Consensus        21 ~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          21 KVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            699999999999999999995 4578888765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=84.67  E-value=1.2  Score=36.77  Aligned_cols=32  Identities=22%  Similarity=0.348  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||.|..|.-+|..|++.+.+|+++.|+.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            58999999999999999999988999998854

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=84.53  E-value=1.1  Score=39.29  Aligned_cols=32  Identities=16%  Similarity=0.288  Sum_probs=28.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|..|+-.|+.|.+. .+|+++.+++.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~   40 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL   40 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence            489999999999999999998 67999988753

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=84.42  E-value=1.4  Score=33.76  Aligned_cols=31  Identities=16%  Similarity=0.326  Sum_probs=27.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~   31 (182)
                      +|+|||.|-.|.++|..|+..+ .+++++.+.
T Consensus        23 ~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        23 HVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            6999999999999999999965 578888775

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=84.27  E-value=1.5  Score=34.34  Aligned_cols=31  Identities=19%  Similarity=0.300  Sum_probs=26.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~   31 (182)
                      +|+|||.|-.|.++|..|++.+ .+++++...
T Consensus        23 ~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          23 RVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            6999999999999999999964 478887654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=84.23  E-value=1.6  Score=37.94  Aligned_cols=31  Identities=16%  Similarity=0.279  Sum_probs=24.9

Q ss_pred             CEEEEcCCccHHHHHHHHhc-cCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAG-VAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~-~a~~V~l~~r~   31 (182)
                      +|+|||+|.+|+-.|..|.+ ....|++..-+
T Consensus        23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~   54 (498)
T KOG0685|consen   23 KIVIIGAGIAGLAAATRLLENGFIDVLILEAS   54 (498)
T ss_pred             eEEEECCchHHHHHHHHHHHhCCceEEEEEec
Confidence            69999999999999999995 44566666543

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.09  E-value=16  Score=31.06  Aligned_cols=30  Identities=20%  Similarity=0.318  Sum_probs=27.3

Q ss_pred             EEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            2 IILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         2 V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      -+|||||.-|+-.|..-++++.+|-++...
T Consensus        23 ylvIGgGSGGvasARrAa~~GAkv~l~E~~   52 (478)
T KOG0405|consen   23 YLVIGGGSGGVASARRAASHGAKVALCELP   52 (478)
T ss_pred             eEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence            589999999999999999999999998765

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=83.92  E-value=1.5  Score=35.99  Aligned_cols=32  Identities=19%  Similarity=0.161  Sum_probs=28.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~   32 (182)
                      +|.|||+|..|.-+|..|+...  .+|.++.+..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            5899999999999999999865  6899998764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=83.78  E-value=1.7  Score=34.33  Aligned_cols=31  Identities=19%  Similarity=0.463  Sum_probs=26.8

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~   31 (182)
                      +|+|||.|-.|.|++..|+.. ..+++++...
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D   32 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMD   32 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            699999999999999999985 4578888764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=83.67  E-value=1.5  Score=36.58  Aligned_cols=32  Identities=16%  Similarity=0.308  Sum_probs=28.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|+|||.|-.|..+|..|++.+ .+++++.+..
T Consensus        26 ~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         26 HVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            6999999999999999999976 4788888753

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=83.61  E-value=1.5  Score=32.46  Aligned_cols=32  Identities=13%  Similarity=0.200  Sum_probs=27.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|++|...+..+.....+|+......
T Consensus        22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   22 KVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             EEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            58999999999999999999988888887643

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=83.55  E-value=1.5  Score=36.78  Aligned_cols=33  Identities=15%  Similarity=0.150  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      .|-|||+|..|.|.|-.+++.+-.|.|...++.
T Consensus         5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~   37 (439)
T COG1206           5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV   37 (439)
T ss_pred             ceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence            378999999999999999999999999987653

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=83.52  E-value=1.5  Score=36.02  Aligned_cols=32  Identities=19%  Similarity=0.169  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|+-|.-+|..|++.+.+|++..|++
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            58999999999999999999888999998854

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=83.46  E-value=1.2  Score=38.01  Aligned_cols=32  Identities=22%  Similarity=0.466  Sum_probs=28.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|..|..+|..|.+...+|+++.+.+
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~   33 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE   33 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            58999999999999999999888899988743

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=83.46  E-value=1.3  Score=35.72  Aligned_cols=32  Identities=28%  Similarity=0.195  Sum_probs=28.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|..|.-+|..|.+.+.+|+++.|++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999888899888754

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=83.40  E-value=1.6  Score=36.05  Aligned_cols=31  Identities=16%  Similarity=0.424  Sum_probs=26.7

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~   31 (182)
                      +|+|||.|-.|.|+|..|+.. ..+++++...
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D   32 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLD   32 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCC
Confidence            699999999999999999985 4578888764

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=83.39  E-value=2  Score=32.95  Aligned_cols=31  Identities=16%  Similarity=0.345  Sum_probs=26.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~   31 (182)
                      +|+|||.|..|.|+|..|+..+ .+++++...
T Consensus        23 ~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          23 RILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             cEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            6999999999999999999954 578888764

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=83.31  E-value=1.8  Score=35.28  Aligned_cols=31  Identities=13%  Similarity=0.203  Sum_probs=27.4

Q ss_pred             CEEEEcCCc-cHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSA-SAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~-sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||.|. .|.-+|..|.+....|++++++
T Consensus       160 ~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~  191 (286)
T PRK14175        160 NAVVIGRSHIVGQPVSKLLLQKNASVTILHSR  191 (286)
T ss_pred             EEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            589999998 9999999999887789998874

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=83.17  E-value=1.3  Score=36.40  Aligned_cols=32  Identities=16%  Similarity=0.333  Sum_probs=27.3

Q ss_pred             CEEEEcCCccHHHHHHHHhc-cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG-VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~-~a~~V~l~~r~~   32 (182)
                      +|+|||+|..|.-++..|.. .+++|+++.|..
T Consensus       180 ~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~  212 (311)
T cd05213         180 KVLVIGAGEMGELAAKHLAAKGVAEITIANRTY  212 (311)
T ss_pred             EEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            58999999999999999987 457899888854

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=83.13  E-value=1.4  Score=35.60  Aligned_cols=32  Identities=13%  Similarity=0.197  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|+.|..+|..|++.+.+|++..|++
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            68999999999999999999888999887764

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=83.13  E-value=1.4  Score=30.84  Aligned_cols=32  Identities=31%  Similarity=0.309  Sum_probs=24.2

Q ss_pred             CEEEEc-CCccHHHHHHHHhccC--CeEEEEeccC
Q 037525            1 VIILVG-SSASAVDICRDLAGVA--KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG-~G~sg~d~A~~l~~~a--~~V~l~~r~~   32 (182)
                      ||.||| .|+.|.++...|.+.-  +.+.++.++.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~   35 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR   35 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence            689999 9999999999999843  2344555543

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=83.03  E-value=2.4  Score=35.09  Aligned_cols=32  Identities=9%  Similarity=0.134  Sum_probs=26.6

Q ss_pred             CEEEEcC-CccHHHHHHHHhc--cCC-----eEEEEeccC
Q 037525            1 VIILVGS-SASAVDICRDLAG--VAK-----EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~--~a~-----~V~l~~r~~   32 (182)
                      +|.|||+ |+.|..+|..|+.  .+.     ++.|+...+
T Consensus         4 KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~   43 (322)
T cd01338           4 RVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQ   43 (322)
T ss_pred             EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCC
Confidence            5899999 9999999999985  456     788887744

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=83.00  E-value=1.8  Score=36.19  Aligned_cols=31  Identities=19%  Similarity=0.342  Sum_probs=27.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~   31 (182)
                      +|+|||+|-.|..+|..|++.+- +++++.+.
T Consensus        26 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         26 HVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            69999999999999999999654 78888874

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=82.96  E-value=1.7  Score=33.66  Aligned_cols=32  Identities=19%  Similarity=0.321  Sum_probs=28.1

Q ss_pred             CEEEEc-CCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVG-SSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG-~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.||| .|+-|.-+|..|++.+.+|++..|++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            589997 69999999999999888899887754

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=82.92  E-value=1.7  Score=35.53  Aligned_cols=32  Identities=16%  Similarity=0.375  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|.|..|.-++..|...+.+|+++.|+.
T Consensus       154 kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        154 NVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999888999998864

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=82.71  E-value=1.7  Score=33.39  Aligned_cols=31  Identities=6%  Similarity=0.131  Sum_probs=27.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|+|.|+.|.-+|..|.+.+.+|+++.+.
T Consensus        30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4899999999999999999988899877654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=82.25  E-value=2  Score=36.56  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|+|+|+|..|.=+|..|++.. .+|++..|..
T Consensus         3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            6899999999999999999866 7899999973

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=81.92  E-value=2  Score=35.08  Aligned_cols=33  Identities=12%  Similarity=0.289  Sum_probs=28.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~~   33 (182)
                      +|+|||+|..|.-+|..|+...  .++.++.+...
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            5899999999999999999755  68999988543

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=81.80  E-value=18  Score=31.07  Aligned_cols=33  Identities=9%  Similarity=0.136  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|+-|.-.|..-++.+-+...+..+..
T Consensus        41 DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~   73 (506)
T KOG1335|consen   41 DVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGT   73 (506)
T ss_pred             CEEEECCCCchHHHHHHHHHhcceeEEEeccCc
Confidence            589999999999999999998887777776554

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=81.68  E-value=1.7  Score=34.02  Aligned_cols=32  Identities=25%  Similarity=0.392  Sum_probs=27.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-C--eEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-K--EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~--~V~l~~r~~   32 (182)
                      +|+|+|+|-.|.-+|..|.+.+ +  +++++.|..
T Consensus        27 rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          27 KIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             EEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            5899999999999999999854 4  799998874

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR00518 alaDH alanine dehydrogenase

Probab=81.66  E-value=1.8  Score=36.48  Aligned_cols=32  Identities=9%  Similarity=0.322  Sum_probs=28.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|..|.-.+..+...+.+|+++.|+.
T Consensus       169 ~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       169 DVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             eEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            58999999999999999998877899988753

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=81.65  E-value=2.1  Score=34.98  Aligned_cols=31  Identities=16%  Similarity=0.447  Sum_probs=26.3

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~   31 (182)
                      +|+|||+|-.|.|++..|+.. ..+++++...
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D   32 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD   32 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            699999999999999999985 3578887654

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=81.58  E-value=1.8  Score=37.14  Aligned_cols=32  Identities=13%  Similarity=0.275  Sum_probs=27.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|+|||+|..|.-++..|...+ .+|+++.|..
T Consensus       182 ~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~  214 (417)
T TIGR01035       182 KALLIGAGEMGELVAKHLLRKGVGKILIANRTY  214 (417)
T ss_pred             EEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            5899999999999999998866 7899988754

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=81.51  E-value=2  Score=36.64  Aligned_cols=32  Identities=22%  Similarity=0.216  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|+.|.-+|..|++.+.+|+++.+.+
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence            58999999999999999999888999988754

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=81.49  E-value=12  Score=32.17  Aligned_cols=36  Identities=11%  Similarity=0.036  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVADGT   36 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~~~   36 (182)
                      +++.||-|++-+-+|..|.+.. .+.....|++.+.|
T Consensus         7 DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~W   43 (436)
T COG3486           7 DLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSW   43 (436)
T ss_pred             eeEEEccCchHHHHHHHhccccCcceEEEecCCCCCc
Confidence            4688999999999999999976 56777888887654

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=81.48  E-value=1.8  Score=35.59  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|+|+|..|.=++..|++....|++..|.+.
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            689999999999999999998888999988763

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=81.24  E-value=1.8  Score=37.95  Aligned_cols=32  Identities=6%  Similarity=-0.010  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|.-|.-+|..++..+.+|++..+.+
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            58999999999999999999988999988754

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=81.17  E-value=2  Score=35.06  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|+-|.-+|..|++.+.+|++..|+.
T Consensus         6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          6 TIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            58999999999999999999998999888864

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=80.97  E-value=2.1  Score=36.96  Aligned_cols=31  Identities=19%  Similarity=0.393  Sum_probs=26.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccC------CeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVA------KEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a------~~V~l~~r~   31 (182)
                      +|+|||+|..|.|++..|+..+      .+++++...
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D   37 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMD   37 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCC
Confidence            6999999999999999999854      478887764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=80.93  E-value=1.7  Score=38.20  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|.-|..+|..++..+.+|++..+.+
T Consensus         7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~   38 (503)
T TIGR02279         7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA   38 (503)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            58999999999999999999999999998864

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=80.78  E-value=2.6  Score=32.68  Aligned_cols=31  Identities=19%  Similarity=0.244  Sum_probs=26.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~   31 (182)
                      +|+|||.|-.|.++|..|++.+ .+++++...
T Consensus        30 ~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         30 KVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            6999999999999999999965 468888764

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=80.53  E-value=1.9  Score=39.67  Aligned_cols=32  Identities=13%  Similarity=0.048  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|.-|..||..++..+.+|++..+.+
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (715)
T PRK11730        315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ  346 (715)
T ss_pred             eEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence            58999999999999999999999999998765

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=80.47  E-value=2.6  Score=33.37  Aligned_cols=31  Identities=16%  Similarity=0.260  Sum_probs=26.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~   31 (182)
                      +|+|||.|-.|.++|..|++.+ .+++++...
T Consensus        26 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        26 RVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            6999999999999999999954 578888764

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=80.31  E-value=2.2  Score=36.91  Aligned_cols=32  Identities=16%  Similarity=0.269  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|.|.||+-+|..|.+.+.+|+++.+++
T Consensus        16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            58999999999999999999888999998654

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=80.22  E-value=2.6  Score=32.77  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +++|+|.|+.|.-+|..++....+|.+..|+.+
T Consensus         3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~   35 (211)
T COG2085           3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRGP   35 (211)
T ss_pred             EEEEeccChHHHHHHHHHHhCCCeEEEecCCCh
Confidence            478999999999999999999999999977765

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=80.13  E-value=2.2  Score=36.68  Aligned_cols=31  Identities=19%  Similarity=0.378  Sum_probs=25.5

Q ss_pred             CEEEEcCCccHHHHHHHHhcc----CCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGV----AKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~----a~~V~l~~r~   31 (182)
                      .|+|||||+.|.-+|.+|...    -++|.|..-.
T Consensus        38 dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~   72 (481)
T KOG3855|consen   38 DVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG   72 (481)
T ss_pred             CEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence            589999999999999999862    4578888655

>PRK10637 cysG siroheme synthase; Provisional

Probab=80.06  E-value=2.2  Score=37.07  Aligned_cols=31  Identities=19%  Similarity=0.176  Sum_probs=27.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||||..|.-=+..|.+.+.+|+++...
T Consensus        14 ~vlvvGgG~vA~rk~~~ll~~ga~v~visp~   44 (457)
T PRK10637         14 DCLLVGGGDVAERKARLLLDAGARLTVNALA   44 (457)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            5999999999999889999988899998653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	182
1vqw_A	457	Crystal Structure Of A Protein With Similarity To F		5e-13
2gv8_A	447	Crystal Structure Of Flavin-Containing Monooxygenas		5e-13
2xvi_A	464	Crystal Structure Of The Mutant Bacterial Flavin Co		3e-10
2xve_A	464	Crystal Structure Of Bacterial Flavin-Containing Mo		7e-10
2xls_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		8e-10
2xlp_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		8e-10
2xlr_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		8e-10
2vq7_A	461	Bacterial Flavin-Containing Monooxygenase In Comple		8e-10
2xvf_A	464	Crystal Structure Of Bacterial Flavin-Containing Mo		9e-09

>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin- Containing Monooxygenases And To Mammalian Dimethylalanine Monooxygenases Length = 457

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 18/165 (10%)
Query: 2   IILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAH---DN 58
           +++VG ++SA D+ R L  VAK  H + +S+  G         N  L  + E        
Sbjct: 217 VLVVGGASSANDLVRHLTPVAK--HPIYQSLLGGG-----DIQNESLQQVPEITKFDPTT 269
Query: 59  GAVVFRNGHTV-HADVILHCTGYKYHFPF-----LETNGIVTMDD-NRVGPLYKHVFPPV 111
             +  + G  + + D +++CTGY Y  PF     L++     +DD + V  +Y+H+F  +
Sbjct: 270 REIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFY-I 328
Query: 112 LAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMME 156
             P L+FVGL   V+PFP  + Q+ ++A V SG++ LPS+EE ++
Sbjct: 329 PDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLK 373

>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo) From S.Pombe And Nadph Cofactor Complex Length = 447

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 18/165 (10%)
Query: 2   IILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAH---DN 58
           +++VG ++SA D+ R L  VAK  H + +S+  G         N  L  + E        
Sbjct: 215 VLVVGGASSANDLVRHLTPVAK--HPIYQSLLGGG-----DIQNESLQQVPEITKFDPTT 267
Query: 59  GAVVFRNGHTV-HADVILHCTGYKYHFPF-----LETNGIVTMDD-NRVGPLYKHVFPPV 111
             +  + G  + + D +++CTGY Y  PF     L++     +DD + V  +Y+H+F  +
Sbjct: 268 REIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFY-I 326
Query: 112 LAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMME 156
             P L+FVGL   V+PFP  + Q+ ++A V SG++ LPS+EE ++
Sbjct: 327 PDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLK 371

>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin Containing Monooxygenase (Y207s) Length = 464

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 10/184 (5%)
Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
            ++LVGSS+SA DI         +  +     A   Y+    +D     +++    +N  
Sbjct: 199 TVLLVGSSSSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDER--PNLVRVDTENA- 255
Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVL---APWLS 117
             F +G +   D I+ CTGY +HFPFL  + +  + +NR+ PL  +++  V+    P   
Sbjct: 256 -YFADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFF 311
Query: 118 FVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHN 177
           ++G+  +   F + + Q+ +   V+ G++ LPS+EEM  D+ A+        T +     
Sbjct: 312 YIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTY 371
Query: 178 MGDY 181
            GDY
Sbjct: 372 QGDY 375

>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 10/184 (5%)
Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
            ++LVGSS SA DI         +  +     A   Y+    +D     +++    +N  
Sbjct: 199 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDER--PNLVRVDTENA- 255
Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVL---APWLS 117
             F +G +   D I+ CTGY +HFPFL  + +  + +NR+ PL  +++  V+    P   
Sbjct: 256 -YFADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFF 311
Query: 118 FVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHN 177
           ++G+  +   F + + Q+ +   V+ G++ LPS+EEM  D+ A+        T +     
Sbjct: 312 YIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTY 371
Query: 178 MGDY 181
            GDY
Sbjct: 372 QGDY 375

>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78lys Mutant Length = 461

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 10/184 (5%)
Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
            ++LVGSS SA DI         +  +     A   Y+    +D     +++    +N  
Sbjct: 204 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDER--PNLVRVDTENA- 260
Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVL---APWLS 117
             F +G +   D I+ CTGY +HFPFL  + +  + +NR+ PL  +++  V+    P   
Sbjct: 261 -YFADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFF 316
Query: 118 FVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHN 177
           ++G+  +   F + + Q+ +   V+ G++ LPS+EEM  D+ A+        T +     
Sbjct: 317 YIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTY 376
Query: 178 MGDY 181
            GDY
Sbjct: 377 QGDY 380

>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen- Activation By Flavin-Containing Monooxygenase: Asn78ser Mutant Length = 461

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 10/184 (5%)
Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
            ++LVGSS SA DI         +  +     A   Y+    +D     +++    +N  
Sbjct: 204 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDER--PNLVRVDTENA- 260
Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVL---APWLS 117
             F +G +   D I+ CTGY +HFPFL  + +  + +NR+ PL  +++  V+    P   
Sbjct: 261 -YFADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFF 316
Query: 118 FVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHN 177
           ++G+  +   F + + Q+ +   V+ G++ LPS+EEM  D+ A+        T +     
Sbjct: 317 YIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTY 376
Query: 178 MGDY 181
            GDY
Sbjct: 377 QGDY 380

>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78asp Mutant Length = 461

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 10/184 (5%)
Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
            ++LVGSS SA DI         +  +     A   Y+    +D     +++    +N  
Sbjct: 204 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDER--PNLVRVDTENA- 260
Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVL---APWLS 117
             F +G +   D I+ CTGY +HFPFL  + +  + +NR+ PL  +++  V+    P   
Sbjct: 261 -YFADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFF 316
Query: 118 FVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHN 177
           ++G+  +   F + + Q+ +   V+ G++ LPS+EEM  D+ A+        T +     
Sbjct: 317 YIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTY 376
Query: 178 MGDY 181
            GDY
Sbjct: 377 QGDY 380

>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With Nadp: Native Data Length = 461

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 10/184 (5%)
Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
            ++LVGSS SA DI         +  +     A   Y+    +D     +++    +N  
Sbjct: 204 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDER--PNLVRVDTENA- 260
Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVL---APWLS 117
             F +G +   D I+ CTGY +HFPFL  + +  + +NR+ PL  +++  V+    P   
Sbjct: 261 -YFADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFF 316
Query: 118 FVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHN 177
           ++G+  +   F + + Q+ +   V+ G++ LPS+EEM  D+ A+        T +     
Sbjct: 317 YIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTY 376
Query: 178 MGDY 181
            GDY
Sbjct: 377 QGDY 380

>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 10/184 (5%)
Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
            ++LVGSS SA DI         +  +     A   Y+    +D     +++    +N  
Sbjct: 199 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPXGYKWPENWDER--PNLVRVDTENA- 255
Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVL---APWLS 117
             F +G +   D I+ CTGY +HFPFL  + +  + +NR+ PL  +++  V+    P   
Sbjct: 256 -YFADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFF 311
Query: 118 FVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHN 177
           ++G   +   F   + Q+ +   V+ G++ LPS+EE   D+ A+        T +     
Sbjct: 312 YIGXQDQWYSFNXFDAQAWYARDVIXGRLPLPSKEEXKADSXAWREKELTLVTAEEXYTY 371
Query: 178 MGDY 181
            GDY
Sbjct: 372 QGDY 375

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	7e-52
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	6e-46
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	2e-11
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	2e-08

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score =  170 bits (433), Expect = 7e-52
 Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 17/187 (9%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
            +++VG ++SA D+ R L  VAK     S     G  + Q   +++     I        
Sbjct: 214 SVLVVGGASSANDLVRHLTPVAKHPIYQSLL---GGGDIQN--ESLQQVPEITKFDPTTR 268

Query: 61  VVFRNGHTV--HADVILHCTGYKYHFPFLE------TNGIVTMDDNRVGPLYKHVFPPVL 112
            ++  G  V  + D +++CTGY Y  PF            +  D + V  +Y+H+F    
Sbjct: 269 EIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYI-P 327

Query: 113 APWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPK 172
            P L+FVGL   V+PFP  + Q+ ++A V SG++ LPS+EE ++       +L  +    
Sbjct: 328 DPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELMFSLSGAN--- 384

Query: 173 RYTHNMG 179
              H++ 
Sbjct: 385 NMYHSLD 391

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score =  155 bits (394), Expect = 6e-46
 Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 6/182 (3%)

Query: 1   VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGA 60
            ++LVGSS SA DI         +  +                +N      +        
Sbjct: 199 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYR---TAPMGYKWPENWDERPNLVRVDTEN- 254

Query: 61  VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFV 119
             F +G +   D I+ CTGY +HFPFL  +  +  ++      LYK V      P   ++
Sbjct: 255 AYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVWE-DNPKFFYI 313

Query: 120 GLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMG 179
           G+  +   F + + Q+ +   V+ G++ LPS+EEM  D+ A+        T +      G
Sbjct: 314 GMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQG 373

Query: 180 DY 181
           DY
Sbjct: 374 DY 375

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 19/159 (11%), Positives = 40/159 (25%), Gaps = 43/159 (27%)

Query: 5   VGSSASAVDICRDLAGVAKEVHLVSRSVA------DG--------------TYEKQPGFD 44
           +G   S   I  +++ VA+   +     A      DG                 ++P   
Sbjct: 169 IGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLP 228

Query: 45  NMWL--------------------HSMIESAHDNGAVVFRNGHTVHADVILHCTGYKYHF 84
                                             G + + +G     D ++ CTG++   
Sbjct: 229 PGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTG-MQWADGTERAFDAVIWCTGFRPAL 287

Query: 85  PFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPW 123
             L+   +V         +       +  P +  +G   
Sbjct: 288 SHLKGLDLV--TPQGQVEVDGSGLRALAVPSVWLLGYGD 324

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 29/184 (15%), Positives = 62/184 (33%), Gaps = 33/184 (17%)

Query: 2   IILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFD-NMWLHSMIESAHDNGA 60
            +++G + S  D    LA    ++ L + +      +  P    + +    + +    GA
Sbjct: 169 YVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGA 228

Query: 61  ---------------------VVFRNGHTVHA--DVILHCTGYKYHFPFLETNGIVTMDD 97
                                + F +G +VH   + IL  TG+      +     VT + 
Sbjct: 229 RIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPIL-ATGFDATKNPIVQQLFVTTNQ 287

Query: 98  NRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLC-----EYQSKWIAGVLSGQIVLPSQE 152
                           P +  +G   +     LC       +   +A +L+ +  LP+++
Sbjct: 288 ---DIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREGLPAKQ 344

Query: 153 EMME 156
           E++E
Sbjct: 345 EVIE 348

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.97
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.96
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.78
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.76
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.73
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.67
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.63
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.61
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.55
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.5
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.48
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.47
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.47
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.47
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.47
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.46
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.46
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.45
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.45
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.45
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.45
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.44
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.44
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.44
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.43
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.43
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.42
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.42
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.42
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.41
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.41
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.4
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.4
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.4
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.4
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.4
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.4
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.4
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.4
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.4
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.39
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.39
4dna_A	463	Probable glutathione reductase; structural genomic	99.39
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.39
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.39
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.38
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.38
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.37
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.37
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.37
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.37
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.36
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.36
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.36
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.36
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.36
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.36
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.35
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.35
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.35
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.34
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.33
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.32
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.32
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.32
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.3
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.28
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.27
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.26
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.26
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.26
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.24
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.22
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.22
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.2
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.2
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.2
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.19
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.17
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.11
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.06
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.03
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.03
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.02
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.94
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.93
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.91
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.89
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.88
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.85
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.85
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.74
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.5
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.46
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.42
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.36
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.35
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.34
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.33
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.31
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.25
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.25
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.23
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.21
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.21
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.19
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.19
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.17
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.14
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.14
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.11
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.09
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.08
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.06
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.06
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.04
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.04
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.04
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.01
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.01
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.0
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.99
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.99
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.99
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.98
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.97
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.96
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.95
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.91
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.9
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.9
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.89
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.88
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.86
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.86
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.83
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.78
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.77
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.77
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.76
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.74
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.72
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.72
2bry_A	497	NEDD9 interacting protein with calponin homology a	97.71
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.69
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.68
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.68
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.66
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.65
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.64
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.64
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.64
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.63
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.61
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.6
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.56
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.55
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.55
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.51
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.5
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.48
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.48
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.45
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.43
4dna_A	463	Probable glutathione reductase; structural genomic	97.41
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.39
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.35
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.35
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.29
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.28
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.25
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.23
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.22
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.21
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.21
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.18
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.17
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.16
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.15
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.12
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.11
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.11
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.98
1ojt_A	482	Surface protein; redox-active center, glycolysis,	96.96
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.94
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	96.93
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	96.93
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.75
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.73
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	96.63
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.49
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	96.14
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	96.13
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	96.06
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	96.0
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	95.99
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	95.98
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	95.97
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	95.97
3dme_A	369	Conserved exported protein; structural genomics, P	95.95
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	95.92
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	95.91
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	95.9
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	95.89
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	95.89
3atr_A	453	Conserved archaeal protein; saturating double bond	95.88
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	95.88
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	95.87
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	95.79
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	95.78
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	95.76
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	95.74
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	95.74
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	95.69
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	95.69
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	95.67
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	95.66
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	95.61
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	95.6
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	95.59
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	95.56
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	95.55
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	95.52
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	95.51
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	95.49
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	95.44
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	95.44
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	95.42
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	95.42
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	95.41
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	95.4
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	95.38
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	95.38
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	95.31
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	95.3
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.3
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	95.29
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	95.27
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	95.26
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	95.26
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	95.26
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	95.25
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	95.23
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	95.23
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	95.19
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	95.18
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	95.17
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	95.14
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	95.13
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	95.13
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	95.11
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	95.09
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	95.09
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.07
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	95.04
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.04
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	95.03
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	95.03
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	95.03
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	95.03
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	95.01
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	95.01
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	94.99
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	94.93
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	94.89
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	94.88
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	94.87
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	94.87
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	94.86
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	94.86
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	94.83
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	94.79
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	94.64
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	94.62
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	94.31
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	94.31
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	94.31
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	94.3
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	94.25
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	94.21
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.2
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	94.14
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	93.99
1id1_A	153	Putative potassium channel protein; RCK domain, E.	93.8
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	93.77
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	93.76
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.75
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	93.64
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	93.6
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	93.56
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	93.56
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	93.55
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	93.47
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.43
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.41
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.3
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	93.26
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	93.19
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	92.88
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	92.85
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	92.84
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	92.79
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	92.64
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	92.33
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	92.3
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	92.09
3c85_A	183	Putative glutathione-regulated potassium-efflux S	92.07
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	90.74
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	90.68
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	90.66
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	90.26
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	90.13
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	90.12
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	89.93
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	89.57
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	89.3
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	89.2
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	88.83
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	88.8
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	88.78
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	88.23
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	88.21
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	88.07
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	88.03
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	88.02
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	88.02
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	87.7
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	87.69
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	87.58
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	87.44
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	87.35
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	87.32
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	87.18
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	87.17
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	87.0
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	86.99
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	86.86
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	86.8
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	86.68
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	86.63
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	86.6
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	86.27
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	86.25
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	86.13
3qha_A	296	Putative oxidoreductase; seattle structural genomi	86.03
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	85.82
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	85.77
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	85.46
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	85.1
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	84.94
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	84.75
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	84.74
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	84.65
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	84.56
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	84.5
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	84.25
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	84.11
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	84.03
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	83.98
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	83.97
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	83.92
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	83.88
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	83.87
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	83.74
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	83.58
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	83.53
3aw8_A	369	PURK, phosphoribosylaminoimidazole carboxylase, AT	83.46
4g65_A	461	TRK system potassium uptake protein TRKA; structur	83.38
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	83.29
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	83.28
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	83.27
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	83.1
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	83.07
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	83.01
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	83.0
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	82.86
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	82.82
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	82.79
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	82.72
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	82.72
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	82.69
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	82.58
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	82.57
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	82.47
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	82.35
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	82.27
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	82.26
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	82.17
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	82.12
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	82.09
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	82.04
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	82.04
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	82.02
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	81.91
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	81.9
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	81.77
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	81.76
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	81.73
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	81.7
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	81.68
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	81.57
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	81.53
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	81.5
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	81.45
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	81.27
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	81.15
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	81.14
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	81.08
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	81.03
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	81.01
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	80.96
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	80.88
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	80.84
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	80.74
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	80.53
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	80.4
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	80.34
4ezb_A	317	Uncharacterized conserved protein; structural geno	80.34
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	80.32
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	80.32
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	80.3
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	80.24
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	80.2
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	80.14

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.97  E-value=1.8e-29  Score=215.24  Aligned_cols=170  Identities=26%  Similarity=0.334  Sum_probs=142.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCCCCCeEEcceeEEeeCCCeEEEcCCcEEecCEEEEeccc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTGY   80 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~~~~i~~~~~v~~~~~~~~v~~~dg~~~~~D~vi~atG~   80 (182)
                      +|+|||+|+||+|+|.+|++.+++|+++.|++... ...++  .+|...+.|+++.+ ++|+|.||+++++|.||+||||
T Consensus       199 ~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~-~~~~~--~~V~~~~~V~~i~~-~~V~~~dG~~i~~D~Vi~atG~  274 (464)
T 2xve_A          199 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPM-GYKWP--ENWDERPNLVRVDT-ENAYFADGSSEKVDAIILCTGY  274 (464)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCC-CCCCC--TTEEECSCEEEECS-SEEEETTSCEEECSEEEECCCB
T ss_pred             EEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCC-CCCCC--CceEEcCCeEEEeC-CEEEECCCCEEeCCEEEECCCC
Confidence            58999999999999999999999999999876532 11122  36777789999976 4899999999999999999999


Q ss_pred             ccCCCCCCCCCceecCCC-ccccccccccCCCCCCCEEEEeccCCcccccHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 037525           81 KYHFPFLETNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMMEDTK  159 (182)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~ia~~l~g~~~lP~~~~m~~~~~  159 (182)
                      +++++|++...++..+++ .+.++|++++.++ .|+||++|++.....++.++.||+|++++|.|+.+||+.++|.++++
T Consensus       275 ~p~~~~l~~~~gl~~~~~~~v~~~~~~~~~t~-~p~i~aiGd~~~~~~~~~a~~qa~~~a~~l~G~~~lP~~~~m~~~~~  353 (464)
T 2xve_A          275 IHHFPFLNDDLRLVTNNRLWPLNLYKGVVWED-NPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSM  353 (464)
T ss_dssp             CCCCTTBCTTTCCCCCSSSCCSSEETTTEESS-STTEEECSCSCCSSCHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHH
T ss_pred             CCCCCCcCcccccccCCCcccccccceEecCC-CCCEEEEeCcccccchHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHH
Confidence            999999986445555554 5557899998887 79999999988777899999999999999999999999999999998


Q ss_pred             HHHHHHHHcCC--CCcceec
Q 037525          160 AFYSTLEASGT--PKRYTHN  177 (182)
Q Consensus       160 ~~~~~~~~~~~--~~~~~~~  177 (182)
                      ++.++  .+++  ++|++|+
T Consensus       354 ~~~~~--~~~~~~~~~~~~~  371 (464)
T 2xve_A          354 AWREK--ELTLVTAEEMYTY  371 (464)
T ss_dssp             HHHHH--HHTCCSHHHHHHH
T ss_pred             HHHHH--hhccCCCCCcccc
Confidence            87774  4444  5777775

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.96  E-value=2.8e-28  Score=206.47  Aligned_cols=168  Identities=30%  Similarity=0.500  Sum_probs=137.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCe-EEEEeccCCCCCCCCCCCCCCeEEcceeEEeeC-CCeEEEcCCcE-EecCEEEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKE-VHLVSRSVADGTYEKQPGFDNMWLHSMIESAHD-NGAVVFRNGHT-VHADVILHC   77 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~-V~l~~r~~~~~~~~~~~~~~~i~~~~~v~~~~~-~~~v~~~dg~~-~~~D~vi~a   77 (182)
                      +|+|||+|+||+|+|.+|++.+++ |++++|++.+     + ...+|..++.|+++.. +++|+|.||+. +++|.||+|
T Consensus       214 ~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~-----l-~~~~i~~~~~v~~~~~~~~~v~~~dG~~~~~~D~vi~a  287 (447)
T 2gv8_A          214 SVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD-----I-QNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYC  287 (447)
T ss_dssp             CEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS-----C-BCSSEEEECCEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred             EEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc-----C-CCCCeEEecCeEEEecCCCEEEECCCCEeccCCEEEEC
Confidence            699999999999999999999999 9999998755     1 1246777888999953 35899999987 689999999


Q ss_pred             cccccCCCC-----CCCC-CceecCCCccccccccccCCCCCCCEEEEeccCCcccccHHHHHHHHHHHHHcCCCCCCCH
Q 037525           78 TGYKYHFPF-----LETN-GIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQ  151 (182)
Q Consensus        78 tG~~~~~~~-----l~~~-~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~ia~~l~g~~~lP~~  151 (182)
                      |||+++++|     ++.. ..+..++....++|+++|+++ +|+|||+|.+.....++.++.||+|+|++|.|+.+||+.
T Consensus       288 tG~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~-~p~l~~~G~~~~~~~~~~a~~qa~~~a~~~~g~~~lp~~  366 (447)
T 2gv8_A          288 TGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIP-DPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSK  366 (447)
T ss_dssp             CCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETT-CTTEEESSCCBSSCHHHHHHHHHHHHHHHHTTSSCCCCH
T ss_pred             CCCCcCCCCCcccccccccCceecCCCcccccccccccCC-CCcEEEEeccccccCchHHHHHHHHHHHHHcCCCCCcCH
Confidence            999999999     8752 233344444447899999887 899999999876667899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-cCCCCcceecCC
Q 037525          152 EEMMEDTKAFYSTLEA-SGTPKRYTHNMG  179 (182)
Q Consensus       152 ~~m~~~~~~~~~~~~~-~~~~~~~~~~~~  179 (182)
                      ++|.+|+++..   .. ++.+ +.+|+|+
T Consensus       367 ~~m~~~~~~~~---~~~~~~~-~~~~~~~  391 (447)
T 2gv8_A          367 EEQLKWQDELM---FSLSGAN-NMYHSLD  391 (447)
T ss_dssp             HHHHHHHHHHH---HHHTTCG-GGTTBCT
T ss_pred             HHHHHHHHHHH---HHhcCCC-cceeecC
Confidence            99999997643   33 4433 4558876

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.78  E-value=1.1e-18  Score=151.36  Aligned_cols=112  Identities=21%  Similarity=0.170  Sum_probs=80.4

Q ss_pred             ceeEEeeCCCeEEEcCCcEEecCEEEEecccccCCCCCCCC-----CceecCC---CccccccccccCCCCCCCEEEEec
Q 037525           50 SMIESAHDNGAVVFRNGHTVHADVILHCTGYKYHFPFLETN-----GIVTMDD---NRVGPLYKHVFPPVLAPWLSFVGL  121 (182)
Q Consensus        50 ~~v~~~~~~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~~-----~~~~~~~---~~~~~ly~~~~~~~~~p~l~~iG~  121 (182)
                      ..|+++++ ++|++.||+.+++|+||+||||+++..++...     ++..+++   +.+ ..|+++..++ +||+|++.+
T Consensus       353 ~~I~~it~-~gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~g~~G~~l~~~w~~~~-~~y~g~~v~g-fPN~f~~~G  429 (540)
T 3gwf_A          353 NPIREVTA-KGVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGLHINDHWDGQP-TSYLGVSTAN-FPNWFMVLG  429 (540)
T ss_dssp             SCEEEECS-SEEEETTCCEEECSEEEECCCBSCSSHHHHTSEEECGGGCBHHHHTSSSC-CCBTTTBCTT-CTTEEESSC
T ss_pred             CCccEEec-CeEEcCCCCEEECCEEEECCccCccccCcCcceEECCCCcCHHHhhccCh-hhccccccCC-CCceEEEec
Confidence            57888887 48999999999999999999999986444321     1222221   223 6899999999 699999966


Q ss_pred             cC--CcccccHHHHHHHHHHHHHc-----CCCC-CCCHHHHHHHHHHHHHH
Q 037525          122 PW--KVIPFPLCEYQSKWIAGVLS-----GQIV-LPSQEEMMEDTKAFYST  164 (182)
Q Consensus       122 ~~--~~~~~~~~e~qa~~ia~~l~-----g~~~-lP~~~~m~~~~~~~~~~  164 (182)
                      ++  .++..+++|.|++|+++.|+     |... -|+.+...+|.+...+.
T Consensus       430 p~~~~~s~~~~~e~q~~~i~~~i~~~~~~~~~~~~~~~~a~~~~~~~~~~~  480 (540)
T 3gwf_A          430 PNGPFTNLPPSIETQVEWISDTIGYAERNGVRAIEPTPEAEAEWTETCTEI  480 (540)
T ss_dssp             SSCBCSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHH
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHHHHHHH
Confidence            55  34557899999999999985     2222 36777666666544444

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.76  E-value=1.8e-17  Score=143.91  Aligned_cols=112  Identities=18%  Similarity=0.167  Sum_probs=81.0

Q ss_pred             ceeEEeeCCCeEEEcCCcEEecCEEEEecccccCCCCCCCC-----CceecCC---CccccccccccCCCCCCCEEEEec
Q 037525           50 SMIESAHDNGAVVFRNGHTVHADVILHCTGYKYHFPFLETN-----GIVTMDD---NRVGPLYKHVFPPVLAPWLSFVGL  121 (182)
Q Consensus        50 ~~v~~~~~~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~~-----~~~~~~~---~~~~~ly~~~~~~~~~p~l~~iG~  121 (182)
                      ..|++++++ +|++.|| ++++|+||+||||++.+.++...     ++..+++   .. +..|+++..++ +||+|++.+
T Consensus       361 ~~I~~it~~-gv~~~dG-~~~~D~IV~ATGf~~~~~~~~~~~i~g~~G~~l~~~w~~~-~~~y~g~~~~g-fPN~f~~~g  436 (545)
T 3uox_A          361 APIQEVTPE-GIKTADA-AYDLDVIIYATGFDAVTGSLDRIDIRGKDNVRLIDAWAEG-PSTYLGLQARG-FPNFFTLVG  436 (545)
T ss_dssp             SCEEEEETT-EEEESSC-EEECSEEEECCCCBSSSCSCTTSEEECGGGCBHHHHTTTS-CCCBTTTBCTT-CTTEEECSS
T ss_pred             CCceEEccC-eEEeCCC-eeecCEEEECCccccccccCCCceEECCCCccHHHhhccc-cceeeccccCC-CCcEEEEeC
Confidence            578888874 8999999 99999999999999876655432     1122211   12 26899999998 699999987


Q ss_pred             cCC----cccccHHHHHHHHHHHHHc-----CCCC-CCCHHHHHHHHHHHHHHH
Q 037525          122 PWK----VIPFPLCEYQSKWIAGVLS-----GQIV-LPSQEEMMEDTKAFYSTL  165 (182)
Q Consensus       122 ~~~----~~~~~~~e~qa~~ia~~l~-----g~~~-lP~~~~m~~~~~~~~~~~  165 (182)
                      |+.    ++...++|.|++|+++.|.     |... -|+.+.+.+|.+.-.+.+
T Consensus       437 p~~~~~~~s~~~~~e~~~~~i~~~i~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  490 (545)
T 3uox_A          437 PHNGSTFCNVGVCGGLQAEWVLRMISYMKDNGFTYSEPTQAAENRWTEEVYADF  490 (545)
T ss_dssp             GGGTGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHHHHHH
T ss_pred             CCCCCccccHHHHHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHHHHHHHH
Confidence            763    2456899999999999986     3333 367777776665544443

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.73  E-value=1.2e-17  Score=145.06  Aligned_cols=114  Identities=16%  Similarity=0.103  Sum_probs=82.2

Q ss_pred             ceeEEeeCCCeEEEcCCcEEecCEEEEecccccCCCCCCCC-----CceecCC---CccccccccccCCCCCCCEEEEec
Q 037525           50 SMIESAHDNGAVVFRNGHTVHADVILHCTGYKYHFPFLETN-----GIVTMDD---NRVGPLYKHVFPPVLAPWLSFVGL  121 (182)
Q Consensus        50 ~~v~~~~~~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~~-----~~~~~~~---~~~~~ly~~~~~~~~~p~l~~iG~  121 (182)
                      ..|+++++ ++|++.|| ++++|+||+||||+++..++...     ++..+++   +.+ ..|+++..++ +||+|++.+
T Consensus       366 ~~I~~it~-~gv~~~dG-~~~~D~iI~ATGf~~~~~~~~~~~i~g~~G~~l~~~w~~~~-~~y~g~~~~g-fPN~f~~~G  441 (549)
T 4ap3_A          366 TPIVGMDE-TGIVTTGA-HYDLDMIVLATGFDAMTGSLDKLEIVGRGGRTLKETWAAGP-RTYLGLGIDG-FPNFFNLTG  441 (549)
T ss_dssp             SCEEEEET-TEEEESSC-EEECSEEEECCCEEESSTTGGGSEEECGGGCBHHHHTTTSC-CCBTTTBCTT-CTTEEETTC
T ss_pred             CCceEEeC-CcEEeCCC-ceecCEEEECCcccccccccCceeEECCCCcCHHHhhccch-hhccccccCC-CCcEEEEeC
Confidence            56888887 48999999 99999999999999986555431     1222221   122 6899999999 699999977


Q ss_pred             cCC----cccccHHHHHHHHHHHHHcC-----CCC-CCCHHHHHHHHHHHHHHHHH
Q 037525          122 PWK----VIPFPLCEYQSKWIAGVLSG-----QIV-LPSQEEMMEDTKAFYSTLEA  167 (182)
Q Consensus       122 ~~~----~~~~~~~e~qa~~ia~~l~g-----~~~-lP~~~~m~~~~~~~~~~~~~  167 (182)
                      |+.    ++...++|.|++|+++.|+.     ... -|+.+...+|.+.-.+.+.+
T Consensus       442 p~~~~~~~s~~~~~e~~~~~i~~~i~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  497 (549)
T 4ap3_A          442 PGSPSVLANMVLHSELHVDWVADAIAYLDARGAAGIEGTPEAVADWVEECRNRAEA  497 (549)
T ss_dssp             TTSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCcCccHHHHHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHHHHHHHHhC
Confidence            763    34578999999999999862     112 37777777776655555443

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.67  E-value=1.1e-16  Score=130.94  Aligned_cols=156  Identities=15%  Similarity=0.229  Sum_probs=104.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC--CC---CCCC-----------CC-CeEE--cceeEEee--CCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT--YE---KQPG-----------FD-NMWL--HSMIESAH--DNG   59 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~--~~---~~~~-----------~~-~i~~--~~~v~~~~--~~~   59 (182)
                      +|+|||+|++|+|+|..|++.+++|++++|++.+..  ++   .++.           .. ++.+  +..|.++.  ++.
T Consensus       168 ~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~  247 (369)
T 3d1c_A          168 QYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQ  247 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTE
T ss_pred             EEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEEecCCc
Confidence            589999999999999999999999999999765431  10   0110           11 2543  35677773  321


Q ss_pred             -eEEEcCCcEEe-cCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCCc--c---cccHHH
Q 037525           60 -AVVFRNGHTVH-ADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV--I---PFPLCE  132 (182)
Q Consensus        60 -~v~~~dg~~~~-~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~--~---~~~~~e  132 (182)
                       .+.+.||+.+. +|.||+|||++++++++... .+..+++.+ ........++ .|++|++|++...  .   ....++
T Consensus       248 ~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~-~~~~~~g~i-~v~~~~~~t~-~~~v~a~GD~~~~~~~~~~~~~~~~  324 (369)
T 3d1c_A          248 YHISFDSGQSVHTPHEPILATGFDATKNPIVQQ-LFVTTNQDI-KLTTHDESTR-YPNIFMIGATVENDNAKLCYIYKFR  324 (369)
T ss_dssp             EEEEESSSCCEEESSCCEECCCBCGGGSHHHHH-HSCCTTSCC-CBCTTSBBSS-STTEEECSTTCCCSSCCCCSHHHHG
T ss_pred             eEEEecCCeEeccCCceEEeeccCCccchhhhh-hccCCCCCE-EechhhcccC-CCCeEEeccccccCCeeEEEEehhh
Confidence             47788998765 69999999999998655421 222122223 3333334455 6999999997632  1   224678


Q ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 037525          133 YQSKWIAGVLSGQIVLPSQEEMMEDTK  159 (182)
Q Consensus       133 ~qa~~ia~~l~g~~~lP~~~~m~~~~~  159 (182)
                      .||+++|+.|.|+..+|+.++|.++..
T Consensus       325 ~~a~~~a~~l~~~~~~p~~~~~~~~~~  351 (369)
T 3d1c_A          325 ARFAVLAHLLTQREGLPAKQEVIENYQ  351 (369)
T ss_dssp             GGHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCcchHHHHHH
Confidence            899999999999999999876665543

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.63  E-value=3.1e-15  Score=121.07  Aligned_cols=140  Identities=11%  Similarity=0.103  Sum_probs=94.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC-------------CC--------------------------
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK-------------QP--------------------------   41 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~-------------~~--------------------------   41 (182)
                      +|+|||+|++|+|+|.+|++.+ +|++++|+.....+..             +.                          
T Consensus       165 ~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (357)
T 4a9w_A          165 RVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLD  243 (357)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC----------------------CBCCCHHHHH
T ss_pred             EEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccccCcccChhHHH
Confidence            5899999999999999999998 5999998743211110             00                          


Q ss_pred             --CCCCeEEcceeEEeeCCCeEEEcCCcEEecCEEEEecccccCCCCCCCCCceecCCCcccccccc-ccCCCCCCCEEE
Q 037525           42 --GFDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKH-VFPPVLAPWLSF  118 (182)
Q Consensus        42 --~~~~i~~~~~v~~~~~~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~-~~~~~~~p~l~~  118 (182)
                        ....+...+.+.++.+ .++.+.||+++++|.||+|||++++++++... .+..+.+.+ ....+ +..++ .|++|+
T Consensus       244 ~~~~g~i~~~~~v~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~-gl~~~~G~i-~vd~~~l~~t~-~~~vya  319 (357)
T 4a9w_A          244 ARARGVLAAVPPPARFSP-TGMQWADGTERAFDAVIWCTGFRPALSHLKGL-DLVTPQGQV-EVDGSGLRALA-VPSVWL  319 (357)
T ss_dssp             HHHTTCCCEECCCSEEET-TEEECTTSCEEECSEEEECCCBCCCCGGGTTT-TCBCTTSCB-CBCTTSCBBSS-CTTEEE
T ss_pred             HHhcCceEEecCcceEeC-CeeEECCCCEecCCEEEECCCcCCCCcccCcc-cccCCCCCc-cccCCcccCCC-CCCeEE
Confidence              0012333455666765 47999999999999999999999999988763 344233333 33333 24445 699999


Q ss_pred             Eec--cCC--cccccHHHHHHHHHHHHHcCC
Q 037525          119 VGL--PWK--VIPFPLCEYQSKWIAGVLSGQ  145 (182)
Q Consensus       119 iG~--~~~--~~~~~~~e~qa~~ia~~l~g~  145 (182)
                      +|+  ...  ......+..|++.+|..+...
T Consensus       320 ~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~  350 (357)
T 4a9w_A          320 LGYGDWNGMASATLIGVTRYAREAVRQVTAY  350 (357)
T ss_dssp             CSSCGGGSTTCSSTTTHHHHHHHHHHHHHHH
T ss_pred             eccccccccchhhhhhhHHHHHHHHHHHHHH
Confidence            994  332  234556777777777766543

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.61  E-value=3.4e-15  Score=129.25  Aligned_cols=111  Identities=16%  Similarity=0.108  Sum_probs=75.6

Q ss_pred             ceeEEeeCCCeEEEcCCcEEecCEEEEecccccCCCCCCCC-----CceecCC---CccccccccccCCCCCCCEEEE-e
Q 037525           50 SMIESAHDNGAVVFRNGHTVHADVILHCTGYKYHFPFLETN-----GIVTMDD---NRVGPLYKHVFPPVLAPWLSFV-G  120 (182)
Q Consensus        50 ~~v~~~~~~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~~-----~~~~~~~---~~~~~ly~~~~~~~~~p~l~~i-G  120 (182)
                      ..|+++++ ++|++.| +++++|+|||||||+++.+++...     .+..+.+   .. +..|+++..++ +||+|++ |
T Consensus       361 ~~i~~i~~-~gv~~~d-~~~~~D~ii~atG~~~~~~~~~~~~i~g~~G~~l~~~w~~~-~~~y~~~~v~~-~Pn~f~~~G  436 (542)
T 1w4x_A          361 APIETITP-RGVRTSE-REYELDSLVLATGFDALTGALFKIDIRGVGNVALKEKWAAG-PRTYLGLSTAG-FPNLFFIAG  436 (542)
T ss_dssp             SCEEEECS-SEEEESS-CEEECSEEEECCCCCCTTHHHHTSEEECGGGCBHHHHTTTS-CCCBTTTBCTT-STTEEESSC
T ss_pred             CCceEEcC-CeEEeCC-eEEecCEEEEcCCccccccCcCceeeECCCCCCHHHhhcCc-hheecccccCC-CCceEEEcC
Confidence            56788876 4899999 889999999999999875554321     1111111   12 25789998888 6999998 6


Q ss_pred             ccCC---cccccHHHHHHHHHHHHHcCC----C-C-CCCHHHHHHHHHHHHHH
Q 037525          121 LPWK---VIPFPLCEYQSKWIAGVLSGQ----I-V-LPSQEEMMEDTKAFYST  164 (182)
Q Consensus       121 ~~~~---~~~~~~~e~qa~~ia~~l~g~----~-~-lP~~~~m~~~~~~~~~~  164 (182)
                      ....   ++..+.+|.|++|+++.|...    . . -|+.+...+|.+...+.
T Consensus       437 ~~~~~~~~~~~~~~e~q~~~ia~~i~~~~~~~~~~~~~~~~a~~~~~~~~~~~  489 (542)
T 1w4x_A          437 PGSPSALSNMLVSIEQHVEWVTDHIAYMFKNGLTRSEAVLEKEDEWVEHVNEI  489 (542)
T ss_dssp             TTSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCCEEECHHHHHHHHHHHHHH
T ss_pred             CCCCcccccHHHHHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHHHHHHH
Confidence            5432   234589999999999998632    2 2 25666666665444333

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.55  E-value=6.7e-14  Score=118.19  Aligned_cols=142  Identities=15%  Similarity=0.195  Sum_probs=103.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC-C--------CCC-CCeEEcceeEEeeCCCeEEEcCCcEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK-Q--------PGF-DNMWLHSMIESAHDNGAVVFRNGHTV   69 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~-~--------~~~-~~i~~~~~v~~~~~~~~v~~~dg~~~   69 (182)
                      +|+|||+|++|+|+|..+++.+.+|++++|++.+.. .+. .        ... -++..+..|+++++ ..+++.+|+++
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~-~~v~~~~g~~~  227 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAING-NEITFKSGKVE  227 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEET-TEEEETTSCEE
T ss_pred             EEEEECCccchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEecC-CeeeecCCeEE
Confidence            489999999999999999999999999999875421 110 0        000 14556678888876 48999999999


Q ss_pred             ecCEEEEecccccCCCCCCCCCceecCCC-ccccccccccCCCCCCCEEEEeccCCc-----------ccccHHHHHHHH
Q 037525           70 HADVILHCTGYKYHFPFLETNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKV-----------IPFPLCEYQSKW  137 (182)
Q Consensus        70 ~~D~vi~atG~~~~~~~l~~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~e~qa~~  137 (182)
                      ++|.||+|+|.+|+.++++.. ++..+.. .+ ....++- ++ .|++|.+|++...           ...+.+..|++.
T Consensus       228 ~~D~vl~a~G~~Pn~~~~~~~-gl~~~~~G~I-~vd~~~~-Ts-~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~  303 (437)
T 4eqs_A          228 HYDMIIEGVGTHPNSKFIESS-NIKLDRKGFI-PVNDKFE-TN-VPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASI  303 (437)
T ss_dssp             ECSEEEECCCEEESCGGGTTS-SCCCCTTSCE-ECCTTCB-CS-STTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHH
T ss_pred             eeeeEEEEeceecCcHHHHhh-hhhhccCCcE-ecCCCcc-CC-CCCEEEEEEccCcccccCCccccchhHHHHHHHHHH
Confidence            999999999999998877653 4444433 23 2222222 24 6999999998521           234678899999


Q ss_pred             HHHHHcCCCC
Q 037525          138 IAGVLSGQIV  147 (182)
Q Consensus       138 ia~~l~g~~~  147 (182)
                      +|..+.|...
T Consensus       304 ~a~ni~g~~~  313 (437)
T 4eqs_A          304 VAEQIAGNDT  313 (437)
T ss_dssp             HHHHHHSCTT
T ss_pred             HHHHHcCCCC
Confidence            9999998743

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.50  E-value=6.8e-14  Score=117.02  Aligned_cols=139  Identities=14%  Similarity=0.165  Sum_probs=100.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCC-----------CC--CeEEcceeEEeeCCCeEEEcCCc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPG-----------FD--NMWLHSMIESAHDNGAVVFRNGH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~-----------~~--~i~~~~~v~~~~~~~~v~~~dg~   67 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++.+... ...++.           ..  ++.....|+++.+ +.|++.||+
T Consensus       147 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~v~~~~g~  224 (408)
T 2gqw_A          147 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM-SRAAPATLADFVARYHAAQGVDLRFERSVTGSVD-GVVLLDDGT  224 (408)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-TTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEET-TEEEETTSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccc-ccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEEC-CEEEECCCC
Confidence            58999999999999999999999999999986542 110110           01  3445567888874 489999999


Q ss_pred             EEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCCcc-----------cccHHHHHHH
Q 037525           68 TVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVI-----------PFPLCEYQSK  136 (182)
Q Consensus        68 ~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~-----------~~~~~e~qa~  136 (182)
                      ++++|.||+|+|++|+.++++.. ++..+++ + ....++- .+ .|++|.+|++....           .+..+..|++
T Consensus       225 ~i~~D~vi~a~G~~p~~~l~~~~-gl~~~~g-i-~Vd~~~~-t~-~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~  299 (408)
T 2gqw_A          225 RIAADMVVVGIGVLANDALARAA-GLACDDG-I-FVDAYGR-TT-CPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGI  299 (408)
T ss_dssp             EEECSEEEECSCEEECCHHHHHH-TCCBSSS-E-ECCTTCB-CS-STTEEECGGGEEEEETTTTEEECCCCHHHHHHHHH
T ss_pred             EEEcCEEEECcCCCccHHHHHhC-CCCCCCC-E-EECCCCc-cC-CCCEEEEEEEEEecCccCCceeeccHHHHHHHHHH
Confidence            99999999999999998776432 2333322 3 2222222 24 69999999986321           3468999999


Q ss_pred             HHHHHHcCCC
Q 037525          137 WIAGVLSGQI  146 (182)
Q Consensus       137 ~ia~~l~g~~  146 (182)
                      .+|..+.|..
T Consensus       300 ~aa~~i~g~~  309 (408)
T 2gqw_A          300 AVARHLVDPT  309 (408)
T ss_dssp             HHHHHHHCTT
T ss_pred             HHHHHhcCCC
Confidence            9999998864

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.48  E-value=3.7e-13  Score=108.42  Aligned_cols=139  Identities=17%  Similarity=0.161  Sum_probs=95.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCCeE--EcceeEEeeCCC---eEEEc---CCc-
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDNMW--LHSMIESAHDNG---AVVFR---NGH-   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~i~--~~~~v~~~~~~~---~v~~~---dg~-   67 (182)
                      +|+|||+|++|+|+|..|++.+++|++++|++.+....    .+....++.  ....++++.+++   +|.+.   +|+ 
T Consensus       154 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~  233 (325)
T 2q7v_A          154 KVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEV  233 (325)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCE
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCcchHHHHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcE
Confidence            58999999999999999999999999999987543111    111112444  346777776532   57776   676 


Q ss_pred             -EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc--ccccHHHHHHHHHHHHHc
Q 037525           68 -TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV--IPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus        68 -~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~ia~~l~  143 (182)
                       ++++|.||+|||++|+.+++...  +..++ +.+ ....+ +..+ .|++|.+|++...  .....+..|++.+|..+.
T Consensus       234 ~~i~~D~vi~a~G~~p~~~~l~~~--~~~~~~g~i-~vd~~-~~t~-~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~  308 (325)
T 2q7v_A          234 SELATDGVFIFIGHVPNTAFVKDT--VSLRDDGYV-DVRDE-IYTN-IPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTE  308 (325)
T ss_dssp             EEEECSEEEECSCEEESCGGGTTT--SCBCTTSCB-CCBTT-TBCS-STTEEECSTTTCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCEEEEccCCCCChHHHhhh--cccCCCccE-ecCCC-CccC-CCCEEEeecccCccHHHHHHHHHHHHHHHHHHH
Confidence             57999999999999998887653  33332 222 22222 2234 6999999998743  345677788888777665


Q ss_pred             C
Q 037525          144 G  144 (182)
Q Consensus       144 g  144 (182)
                      .
T Consensus       309 ~  309 (325)
T 2q7v_A          309 R  309 (325)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.47  E-value=4.2e-14  Score=117.94  Aligned_cols=140  Identities=13%  Similarity=0.143  Sum_probs=99.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCC-----------CC--CeEEcceeEEeeCC-C---eEEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPG-----------FD--NMWLHSMIESAHDN-G---AVVF   63 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~-----------~~--~i~~~~~v~~~~~~-~---~v~~   63 (182)
                      +|+|||+|++|+|+|..+++.+.+|+++++.+.+.. ..++.           ..  ++.....|+++..+ +   +|.+
T Consensus       144 ~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~  222 (404)
T 3fg2_P          144 HVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA-RVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVL  222 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-TTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchh-hccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEe
Confidence            489999999999999999999999999998765421 11110           01  23345677777642 2   5788


Q ss_pred             cCCcEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCCcc-----------cccHHH
Q 037525           64 RNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVI-----------PFPLCE  132 (182)
Q Consensus        64 ~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~-----------~~~~~e  132 (182)
                      .||+++++|.||+|||+.++.+++... ++..+++ + ....++. ++ .|++|.+|++....           .++.+.
T Consensus       223 ~dG~~i~aD~Vv~a~G~~p~~~l~~~~-gl~~~~G-i-~vd~~~~-t~-~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~  297 (404)
T 3fg2_P          223 SDGNTLPCDLVVVGVGVIPNVEIAAAA-GLPTAAG-I-IVDQQLL-TS-DPHISAIGDCALFESVRFGETMRVESVQNAT  297 (404)
T ss_dssp             TTSCEEECSEEEECCCEEECCHHHHHT-TCCBSSS-E-EECTTSB-CS-STTEEECGGGEEEEETTTTEEECCCSHHHHH
T ss_pred             CCCCEEEcCEEEECcCCccCHHHHHhC-CCCCCCC-E-EECCCcc-cC-CCCEEEeecceeecCccCCceeeehHHHHHH
Confidence            899999999999999999998776542 3444433 3 2222222 24 69999999986321           257899


Q ss_pred             HHHHHHHHHHcCCC
Q 037525          133 YQSKWIAGVLSGQI  146 (182)
Q Consensus       133 ~qa~~ia~~l~g~~  146 (182)
                      .|++.+|+.+.|+.
T Consensus       298 ~qg~~aa~~i~g~~  311 (404)
T 3fg2_P          298 DQARCVAARLTGDA  311 (404)
T ss_dssp             HHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999999999864

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.47  E-value=9.7e-13  Score=112.74  Aligned_cols=142  Identities=15%  Similarity=0.112  Sum_probs=97.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeCC--C--eEEEcC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHDN--G--AVVFRN   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~~--~--~v~~~d   65 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|.+.... ++.         +... -++..+..|+++.++  +  .+.+.|
T Consensus       178 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~  257 (500)
T 1onf_A          178 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSD  257 (500)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETT
T ss_pred             eEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECC
Confidence            589999999999999999999999999999765321 100         0001 133445677787642  2  467789


Q ss_pred             CcE-EecCEEEEecccccCCCCC-CCCCceecCCCccccccccccCCCCCCCEEEEeccC--------------------
Q 037525           66 GHT-VHADVILHCTGYKYHFPFL-ETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPW--------------------  123 (182)
Q Consensus        66 g~~-~~~D~vi~atG~~~~~~~l-~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~--------------------  123 (182)
                      |++ +++|.||+|+|++|+.++| -...+++.+.+.+ ....++ .++ .|++|.+|++.                    
T Consensus       258 g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i-~vd~~~-~t~-~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~  334 (500)
T 1onf_A          258 GRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYI-VVDENQ-RTS-VNNIYAVGDCCMVKKSKEIEDLNLLKLYNEE  334 (500)
T ss_dssp             SCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCE-EECTTC-BCS-SSSEEECSTTEEEC-----------------
T ss_pred             CcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEE-EECCCc-ccC-CCCEEEEeccccccccccccccccccccccc
Confidence            988 8999999999999998754 2223444433333 222222 234 69999999876                    


Q ss_pred             --------------C-cccccHHHHHHHHHHHHHcCC
Q 037525          124 --------------K-VIPFPLCEYQSKWIAGVLSGQ  145 (182)
Q Consensus       124 --------------~-~~~~~~~e~qa~~ia~~l~g~  145 (182)
                                    . ....+.+..|++.+|..+.|.
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~  371 (500)
T 1onf_A          335 RYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLK  371 (500)
T ss_dssp             -------------CBCCCCHHHHHHHHHHHHHHHHSC
T ss_pred             cccccccccccccCCcccchhHHHHHHHHHHHHHhCC
Confidence                          1 123567899999999999874

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.47  E-value=2e-13  Score=114.09  Aligned_cols=140  Identities=10%  Similarity=0.035  Sum_probs=100.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCC------------CC-CCeEEcceeEEeeCC-C---eEEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQP------------GF-DNMWLHSMIESAHDN-G---AVVF   63 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~------------~~-~~i~~~~~v~~~~~~-~---~v~~   63 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++.+.+. ...++            .. -++..+..|+++..+ +   +|.+
T Consensus       154 ~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l-~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l  232 (415)
T 3lxd_A          154 NAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVL-ARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRM  232 (415)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-TTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchh-hhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEe
Confidence            48999999999999999999999999999977542 11111            00 134456678888643 2   5788


Q ss_pred             cCCcEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCCcc------------cccHH
Q 037525           64 RNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVI------------PFPLC  131 (182)
Q Consensus        64 ~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~------------~~~~~  131 (182)
                      .||+++++|.||+|+|+.|+.+++... ++..+++ + ....++- ++ .|++|.+|++....            .++.+
T Consensus       233 ~dG~~i~aD~Vv~a~G~~p~~~l~~~~-gl~~~~g-i-~vd~~~~-t~-~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A  307 (415)
T 3lxd_A          233 QDGSVIPADIVIVGIGIVPCVGALISA-GASGGNG-V-DVDEFCR-TS-LTDVYAIGDCAAHANDFADGAVIRLESVQNA  307 (415)
T ss_dssp             SSSCEEECSEEEECSCCEESCHHHHHT-TCCCSSS-E-ECCTTCB-CS-STTEEECGGGEEEECGGGTTCEECCCSHHHH
T ss_pred             CCCCEEEcCEEEECCCCccChHHHHhC-CCCcCCC-E-EECCCCC-cC-CCCEEEEEeeeeecCcccCCcceeechHHHH
Confidence            899999999999999999998776442 3333322 2 2222222 24 69999999986321            25789


Q ss_pred             HHHHHHHHHHHcCCC
Q 037525          132 EYQSKWIAGVLSGQI  146 (182)
Q Consensus       132 e~qa~~ia~~l~g~~  146 (182)
                      ..|++.+|+.+.|+.
T Consensus       308 ~~qg~~aa~~i~g~~  322 (415)
T 3lxd_A          308 NDMATAAAKDICGAP  322 (415)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhcCCC
Confidence            999999999999864

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.47  E-value=6.5e-13  Score=107.63  Aligned_cols=139  Identities=14%  Similarity=0.064  Sum_probs=93.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCC----CCCCCeE--EcceeEEeeCCC---eEEEc---CC--
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQ----PGFDNMW--LHSMIESAHDNG---AVVFR---NG--   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~----~~~~~i~--~~~~v~~~~~~~---~v~~~---dg--   66 (182)
                      +|+|||+|++|+|+|..|++.+++|++++|++.+...+.+    ....+|.  .+..|+++.+++   ++.+.   +|  
T Consensus       157 ~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~~~~~~~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~  236 (335)
T 2a87_A          157 DIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAE  236 (335)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSCTTHHHHHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCC
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCccHHHHHHHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCce
Confidence            5899999999999999999999999999998765321111    0112344  346777886543   37776   45  


Q ss_pred             cEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc--ccccHHHHHHHHHHHHHc
Q 037525           67 HTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV--IPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus        67 ~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~ia~~l~  143 (182)
                      +.+++|.||+|+|++|+.+++..  .+..++ +.+ ....+...++ .|++|.+|++...  .....+..|++.+|..+.
T Consensus       237 ~~i~~D~vi~a~G~~p~~~~~~~--~l~~~~~G~i-~vd~~~~~t~-~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~  312 (335)
T 2a87_A          237 TTLPVTGVFVAIGHEPRSGLVRE--AIDVDPDGYV-LVQGRTTSTS-LPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAE  312 (335)
T ss_dssp             EEECCSCEEECSCEEECCTTTBT--TBCBCTTSCB-CCSTTSSBCS-STTEEECGGGTCCSCCCHHHHHHHHHHHHHHHH
T ss_pred             EEeecCEEEEccCCccChhHhhc--ccccCCCccE-EeCCCCCccC-CCCEEEeeecCCccHHHHHHHHHhHHHHHHHHH
Confidence            46799999999999999888763  334432 223 3333333445 6999999998743  234455666766665553

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=99.46  E-value=9.3e-13  Score=112.55  Aligned_cols=139  Identities=12%  Similarity=0.120  Sum_probs=98.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC--CCC---------CCCC-CCeEEcceeEEeeCCC---eEEEcC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT--YEK---------QPGF-DNMWLHSMIESAHDNG---AVVFRN   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~--~~~---------~~~~-~~i~~~~~v~~~~~~~---~v~~~d   65 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|++.+..  ++.         +... -++.....|+++.+++   .+.+ |
T Consensus       196 ~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~v~~v~~-~  274 (490)
T 2bc0_A          196 RVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIIT-D  274 (490)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEETCCEEEEECSSSCCEEEE-S
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEEeCCEEEEEEcCCcEEEEEE-C
Confidence            589999999999999999999999999999865421  110         0011 1344556788886543   2444 7


Q ss_pred             CcEEecCEEEEecccccCCCCCCCCCceecCC-Ccc-ccccccccCCCCCCCEEEEeccCCc-----------ccccHHH
Q 037525           66 GHTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRV-GPLYKHVFPPVLAPWLSFVGLPWKV-----------IPFPLCE  132 (182)
Q Consensus        66 g~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~-~~ly~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~e  132 (182)
                      |+++++|.||+|+|++|+.++++..  +.+++ +.+ .+.|..+   + .|++|.+|++...           ..+..+.
T Consensus       275 g~~i~~D~Vi~a~G~~p~~~ll~~~--l~~~~~G~I~Vd~~~~t---~-~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~  348 (490)
T 2bc0_A          275 KNEYDVDMVILAVGFRPNTTLGNGK--IDLFRNGAFLVNKRQET---S-IPGVYAIGDCATIYDNATRDTNYIALASNAV  348 (490)
T ss_dssp             SCEEECSEEEECCCEEECCGGGTTC--SCBCTTSCBCCCTTCBC---S-STTEEECGGGBCEEETTTTEEECCCCHHHHH
T ss_pred             CcEEECCEEEECCCCCcChHHHHhh--hccCCCCCEEECCCccc---C-CCCEEEeeeeEEeccccCCceeecccHHHHH
Confidence            8889999999999999998877543  44432 222 1233332   4 6999999998631           2356889


Q ss_pred             HHHHHHHHHHcCCC
Q 037525          133 YQSKWIAGVLSGQI  146 (182)
Q Consensus       133 ~qa~~ia~~l~g~~  146 (182)
                      .|++.+|..+.|..
T Consensus       349 ~qg~~aa~~i~g~~  362 (490)
T 2bc0_A          349 RTGIVAAHNACGTD  362 (490)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999999998863

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.46  E-value=4.1e-13  Score=108.34  Aligned_cols=148  Identities=14%  Similarity=0.069  Sum_probs=92.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCCeE--EcceeEEeeCCC------eEEEc---C
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDNMW--LHSMIESAHDNG------AVVFR---N   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~i~--~~~~v~~~~~~~------~v~~~---d   65 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|++.+....    .+....+|.  .+..|.++.+++      ++.+.   +
T Consensus       161 ~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~  240 (333)
T 1vdc_A          161 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVT  240 (333)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTT
T ss_pred             eEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCccHHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCC
Confidence            58999999999999999999999999999987543211    111112444  346777776433      27776   4


Q ss_pred             C--cEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc--ccccHHHHHHHH---
Q 037525           66 G--HTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV--IPFPLCEYQSKW---  137 (182)
Q Consensus        66 g--~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~---  137 (182)
                      |  +++++|.||+|+|++++.+++..  .+..++ +.+ ....+...++ .|++|.+|++...  .....+..|++.   
T Consensus       241 g~~~~i~~D~vi~a~G~~p~~~~~~~--~l~~~~~G~i-~vd~~~~~t~-~~~vya~GD~~~~~~~~~~~A~~~g~~aa~  316 (333)
T 1vdc_A          241 GDVSDLKVSGLFFAIGHEPATKFLDG--GVELDSDGYV-VTKPGTTQTS-VPGVFAAGDVQDKKYRQAITAAGTGCMAAL  316 (333)
T ss_dssp             CCEEEEECSEEEECSCEEESCGGGTT--SSCBCTTSCB-CCCTTSCBCS-STTEEECGGGGCSSCCCHHHHHHHHHHHHH
T ss_pred             CceEEEecCEEEEEeCCccchHHhhc--cccccCCCCE-EechhhcccC-CCCEEEeeeccCCCchhHHHHHHhHHHHHH
Confidence            5  45799999999999999888763  233332 333 2333323345 6999999998643  223344445444   


Q ss_pred             -HHHHHcCCCCCCCHH
Q 037525          138 -IAGVLSGQIVLPSQE  152 (182)
Q Consensus       138 -ia~~l~g~~~lP~~~  152 (182)
                       +++.+.++.++|.+.
T Consensus       317 ~i~~~l~~~~~~~~~~  332 (333)
T 1vdc_A          317 DAEHYLQEIGSQEGKS  332 (333)
T ss_dssp             HHHHHHHHC-------
T ss_pred             HHHHHHHhccccccCC
Confidence             445556666666543

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.45  E-value=3.3e-13  Score=108.56  Aligned_cols=139  Identities=12%  Similarity=0.038  Sum_probs=93.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCCeE--EcceeEEeeCCC----eEEEcC-----
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDNMW--LHSMIESAHDNG----AVVFRN-----   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~i~--~~~~v~~~~~~~----~v~~~d-----   65 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|++.+....    .+....++.  .+..|.++..++    +|++.+     
T Consensus       175 ~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~  254 (338)
T 3itj_A          175 PLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNE  254 (338)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTE
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCCCHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCc
Confidence            48999999999999999999999999999987543210    011112344  346777876543    377776     


Q ss_pred             CcEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc--ccccHHHHHHHHHHHHH
Q 037525           66 GHTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV--IPFPLCEYQSKWIAGVL  142 (182)
Q Consensus        66 g~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~ia~~l  142 (182)
                      ++++++|.||+|+|+.++.+++..  .+..++ +.+ ..-.....++ .|++|.+|++...  .....+..|++.+|..+
T Consensus       255 ~~~i~~D~vi~a~G~~p~~~~~~~--~l~~~~~G~i-~v~~~~~~t~-~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i  330 (338)
T 3itj_A          255 ETDLPVSGLFYAIGHTPATKIVAG--QVDTDEAGYI-KTVPGSSLTS-VPGFFAAGDVQDSKYRQAITSAGSGCMAALDA  330 (338)
T ss_dssp             EEEEECSEEEECSCEEECCGGGBT--TBCBCTTSCB-CCCTTSSBCS-STTEEECGGGGCSSCCCHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCEEEEEeCCCCChhHhhC--ceEecCCCcE-EEcCcccccC-CCCEEEeeccCCCCccceeeehhhhHHHHHHH
Confidence            356899999999999999888765  344432 222 2112222334 6999999998742  34556666666666554


Q ss_pred             c
Q 037525          143 S  143 (182)
Q Consensus       143 ~  143 (182)
                      .
T Consensus       331 ~  331 (338)
T 3itj_A          331 E  331 (338)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.45  E-value=5.3e-14  Score=117.68  Aligned_cols=141  Identities=14%  Similarity=0.117  Sum_probs=100.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC--CC-C--------CCCC-CCeEEcceeEEeeCCC---eEEEcC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT--YE-K--------QPGF-DNMWLHSMIESAHDNG---AVVFRN   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~--~~-~--------~~~~-~~i~~~~~v~~~~~~~---~v~~~d   65 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++.+.+..  .. .        +... -++..+..|+++.+++   +|++.|
T Consensus       145 ~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~d  224 (410)
T 3ef6_A          145 RLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASD  224 (410)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETT
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECC
Confidence            589999999999999999999999999999875421  00 0        0000 1234456788886532   588999


Q ss_pred             CcEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCCcc----------cccHHHHHH
Q 037525           66 GHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVI----------PFPLCEYQS  135 (182)
Q Consensus        66 g~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~----------~~~~~e~qa  135 (182)
                      |+++++|.||+|+|+.++.+++... ++..+++ + ....++ ..+ .|++|.+|++....          .++.+..|+
T Consensus       225 g~~i~aD~Vv~a~G~~p~~~l~~~~-gl~~~~g-i-~vd~~~-~t~-~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg  299 (410)
T 3ef6_A          225 GRSFVADSALICVGAEPADQLARQA-GLACDRG-V-IVDHCG-ATL-AKGVFAVGDVASWPLRAGGRRSLETYMNAQRQA  299 (410)
T ss_dssp             SCEEECSEEEECSCEEECCHHHHHT-TCCBSSS-E-ECCTTS-BCS-STTEEECGGGEEEEBTTSSEECCCCHHHHHHHH
T ss_pred             CCEEEcCEEEEeeCCeecHHHHHhC-CCccCCe-E-EEccCe-eEC-CCCEEEEEcceeccCCCCCeeeechHHHHHHHH
Confidence            9999999999999999998776542 3444422 2 222222 224 69999999986321          257899999


Q ss_pred             HHHHHHHcCCC
Q 037525          136 KWIAGVLSGQI  146 (182)
Q Consensus       136 ~~ia~~l~g~~  146 (182)
                      +.+|+.+.|+.
T Consensus       300 ~~aa~~i~g~~  310 (410)
T 3ef6_A          300 AAVAAAILGKN  310 (410)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHcCCC
Confidence            99999999864

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.45  E-value=3.6e-13  Score=106.52  Aligned_cols=136  Identities=10%  Similarity=0.077  Sum_probs=94.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCCeEE-cceeEEeeCCCeEEEcCCcEEecCEEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDNMWL-HSMIESAHDNGAVVFRNGHTVHADVIL   75 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~i~~-~~~v~~~~~~~~v~~~dg~~~~~D~vi   75 (182)
                      +|+|||+|++|+|+|..|++.+ +|+++.++... ...    .+.. .++.+ ...|+++.+++.+++.||+++++|.||
T Consensus       143 ~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~-~~~~~~~~l~~-~gv~i~~~~v~~i~~~~~v~~~~g~~~~~D~vi  219 (297)
T 3fbs_A          143 KIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE-PDADQHALLAA-RGVRVETTRIREIAGHADVVLADGRSIALAGLF  219 (297)
T ss_dssp             EEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC-CCHHHHHHHHH-TTCEEECSCEEEEETTEEEEETTSCEEEESEEE
T ss_pred             EEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC-CCHHHHHHHHH-CCcEEEcceeeeeecCCeEEeCCCCEEEEEEEE
Confidence            5899999999999999999997 99999987641 110    0101 12332 357788876447999999999999999


Q ss_pred             EecccccCCCCCCCCCceecCC---C-ccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHHHc
Q 037525           76 HCTGYKYHFPFLETNGIVTMDD---N-RVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus        76 ~atG~~~~~~~l~~~~~~~~~~---~-~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l~  143 (182)
                      +|+|+.|+.+++... .+..+.   + .+ ....+ +.++ .|++|.+|++.. ......+..|++.+|..+.
T Consensus       220 ~a~G~~p~~~~~~~~-g~~~~~~~~G~~i-~vd~~-~~t~-~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~  288 (297)
T 3fbs_A          220 TQPKLRITVDWIEKL-GCAVEEGPMGSTI-VTDPM-KQTT-ARGIFACGDVARPAGSVALAVGDGAMAGAAAH  288 (297)
T ss_dssp             ECCEEECCCSCHHHH-TCCEEEETTEEEE-CCCTT-CBCS-STTEEECSGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EccCcccCchhHHhc-CCccccCCCCceE-EeCCC-CccC-CCCEEEEeecCCchHHHHHHHHhHHHHHHHHH
Confidence            999999988876532 222221   1 22 22222 2234 699999999875 4456677777777776653

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.45  E-value=9.4e-13  Score=112.23  Aligned_cols=141  Identities=16%  Similarity=0.184  Sum_probs=97.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeCC--C---eEEEc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHDN--G---AVVFR   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~~--~---~v~~~   64 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++.+.... ++.         +... -++..+..|+++.++  +   .+.+.
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~  266 (479)
T 2hqm_A          187 KVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMN  266 (479)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEET
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEEC
Confidence            589999999999999999999999999999765321 100         0000 123445677777642  2   47778


Q ss_pred             CC-cEEecCEEEEecccccCCCC-CCCCCceecCC-CccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHH
Q 037525           65 NG-HTVHADVILHCTGYKYHFPF-LETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAG  140 (182)
Q Consensus        65 dg-~~~~~D~vi~atG~~~~~~~-l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~  140 (182)
                      || +++++|.||+|+|++|+..+ ++. .++++++ +.+ ....++ .++ .|++|.+|++.. ....+.+..|++.+|.
T Consensus       267 ~G~~~i~~D~vv~a~G~~p~~~l~l~~-~gl~~~~~G~i-~vd~~~-~t~-~~~IyA~GD~~~~~~~~~~A~~~g~~aa~  342 (479)
T 2hqm_A          267 DSKSIDDVDELIWTIGRKSHLGMGSEN-VGIKLNSHDQI-IADEYQ-NTN-VPNIYSLGDVVGKVELTPVAIAAGRKLSN  342 (479)
T ss_dssp             TSCEEEEESEEEECSCEEECCCSSGGG-GTCCBCTTSCB-CCCTTC-BCS-STTEEECGGGTTSSCCHHHHHHHHHHHHH
T ss_pred             CCcEEEEcCEEEECCCCCCccccChhh-cCceECCCCCE-eECCCC-ccC-CCCEEEEEecCCCcccHHHHHHHHHHHHH
Confidence            89 78899999999999999844 333 2344442 223 222222 234 699999999864 3456788999999999


Q ss_pred             HHcCC
Q 037525          141 VLSGQ  145 (182)
Q Consensus       141 ~l~g~  145 (182)
                      .+.|.
T Consensus       343 ~i~~~  347 (479)
T 2hqm_A          343 RLFGP  347 (479)
T ss_dssp             HHHSC
T ss_pred             HhcCC
Confidence            98864

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.44  E-value=7.6e-13  Score=111.96  Aligned_cols=142  Identities=13%  Similarity=0.149  Sum_probs=98.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCCC---------CCCC-CCeEEcceeEEeeCC--C--eEEEcC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYEK---------QPGF-DNMWLHSMIESAHDN--G--AVVFRN   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~~---------~~~~-~~i~~~~~v~~~~~~--~--~v~~~d   65 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++.+... .++.         +... -++..+..|+++..+  +  .+++.|
T Consensus       169 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~  248 (450)
T 1ges_A          169 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELED  248 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECC
Confidence            58999999999999999999999999999876431 1100         0000 123445677777642  2  577889


Q ss_pred             CcEEecCEEEEecccccCCCCCC-CCCceecCC-CccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHHH
Q 037525           66 GHTVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGVL  142 (182)
Q Consensus        66 g~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l  142 (182)
                      |+++++|.||+|+|++|+.+++. ...++++++ +.+ ....++ .++ .|++|.+|++.. ....+.+..|++.+|..+
T Consensus       249 g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i-~vd~~~-~t~-~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i  325 (450)
T 1ges_A          249 GRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYI-VVDKYQ-NTN-IEGIYAVGDNTGAVELTPVAVAAGRRLSERL  325 (450)
T ss_dssp             SCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCB-CCCTTS-BCS-STTEEECSGGGTSCCCHHHHHHHHHHHHHHH
T ss_pred             CcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCE-eECCCC-ccC-CCCEEEEeccCCCCccHHHHHHHHHHHHHHH
Confidence            98899999999999999987652 112234332 223 222222 234 699999999864 345678899999999999


Q ss_pred             cCC
Q 037525          143 SGQ  145 (182)
Q Consensus       143 ~g~  145 (182)
                      .|.
T Consensus       326 ~~~  328 (450)
T 1ges_A          326 FNN  328 (450)
T ss_dssp             HTT
T ss_pred             cCC
Confidence            874

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.44  E-value=7.9e-13  Score=106.26  Aligned_cols=139  Identities=12%  Similarity=0.090  Sum_probs=94.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCC-CCeEEcceeEEeeCCC----eEEEc---CCc-
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGF-DNMWLHSMIESAHDNG----AVVFR---NGH-   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~-~~i~~~~~v~~~~~~~----~v~~~---dg~-   67 (182)
                      +|+|||+|++|+|+|..|++.+++|++++|++.+....    .+... -++.....++++.+++    ++.+.   +|+ 
T Consensus       157 ~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~  236 (319)
T 3cty_A          157 RVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEE  236 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSCHHHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCCCHHHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCce
Confidence            48999999999999999999999999999876543110    00000 1344456777776432    47775   676 


Q ss_pred             -EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc--ccccHHHHHHHHHHHHHc
Q 037525           68 -TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV--IPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus        68 -~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~ia~~l~  143 (182)
                       .+++|.||+|||+.++.+++... ++.+++ +.+ ....+ +.++ .|++|.+|++...  .....+..|++.+|..+.
T Consensus       237 ~~i~~D~vi~a~G~~p~~~~l~~~-gl~~~~~g~i-~vd~~-~~t~-~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~  312 (319)
T 3cty_A          237 KLIETDGVFIYVGLIPQTSFLKDS-GVKLDERGYI-VVDSR-QRTS-VPGVYAAGDVTSGNFAQIASAVGDGCKAALSLY  312 (319)
T ss_dssp             EEECCSEEEECCCEEECCGGGTTS-CCCBCTTSCB-CCCTT-CBCS-STTEEECSTTBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEecCEEEEeeCCccChHHHhhc-cccccCCccE-eCCCC-CccC-CCCEEEeecccCcchhhHHHHHHHHHHHHHHHH
Confidence             57899999999999998887653 344433 222 22222 2234 6999999998743  335567777777776654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.44  E-value=2.8e-13  Score=111.92  Aligned_cols=137  Identities=15%  Similarity=0.159  Sum_probs=98.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC---------CCCCCCeE--EcceeEEeeCCCeEEEcCCcEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---------QPGFDNMW--LHSMIESAHDNGAVVFRNGHTV   69 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~---------~~~~~~i~--~~~~v~~~~~~~~v~~~dg~~~   69 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|.+....++.         +. ...+.  .+..|+++.. .++++.||+ +
T Consensus       145 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~-~~gV~i~~~~~v~~i~~-~~v~~~~g~-i  221 (367)
T 1xhc_A          145 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLE-ETGVKFFLNSELLEANE-EGVLTNSGF-I  221 (367)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHH-HTTEEEECSCCEEEECS-SEEEETTEE-E
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeeccCCHHHHHHHHHHHH-HCCCEEEcCCEEEEEEe-eEEEECCCE-E
Confidence            589999999999999999999999999998765321100         00 01333  3467888865 479999998 9


Q ss_pred             ecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCC-----cccccHHHHHHHHHHHHHcC
Q 037525           70 HADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-----VIPFPLCEYQSKWIAGVLSG  144 (182)
Q Consensus        70 ~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-----~~~~~~~e~qa~~ia~~l~g  144 (182)
                      ++|.||+|+|++|+.++++.. +++.+++ + ....++ ..+ .|++|.+|++..     ...++.+..|++.+|..+.|
T Consensus       222 ~~D~vi~a~G~~p~~~ll~~~-gl~~~~g-i-~Vd~~~-~t~-~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g  296 (367)
T 1xhc_A          222 EGKVKICAIGIVPNVDLARRS-GIHTGRG-I-LIDDNF-RTS-AKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKG  296 (367)
T ss_dssp             ECSCEEEECCEEECCHHHHHT-TCCBSSS-E-ECCTTS-BCS-STTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTT
T ss_pred             EcCEEEECcCCCcCHHHHHhC-CCCCCCC-E-EECCCc-ccC-CCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcC
Confidence            999999999999998765432 3333322 2 222222 224 699999999852     13467889999999999987


Q ss_pred             C
Q 037525          145 Q  145 (182)
Q Consensus       145 ~  145 (182)
                      .
T Consensus       297 ~  297 (367)
T 1xhc_A          297 E  297 (367)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.43  E-value=1.2e-12  Score=104.54  Aligned_cols=140  Identities=13%  Similarity=0.110  Sum_probs=95.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCCeEE--cceeEEeeCC-C---eEEEc---CCc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDNMWL--HSMIESAHDN-G---AVVFR---NGH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~i~~--~~~v~~~~~~-~---~v~~~---dg~   67 (182)
                      +|+|||+|++|+|+|..|++.+++|++++|++.+....    .+....+|.+  ...++++.++ +   ++++.   +|+
T Consensus       145 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~  224 (311)
T 2q0l_A          145 EVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNE  224 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCCCHHHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCc
Confidence            58999999999999999999999999999987543110    1111124443  4567777642 2   46776   676


Q ss_pred             --EEecCEEEEecccccCCCCCCCCC---ceecCC-CccccccccccCCCCCCCEEEEeccCCc--ccccHHHHHHHHHH
Q 037525           68 --TVHADVILHCTGYKYHFPFLETNG---IVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV--IPFPLCEYQSKWIA  139 (182)
Q Consensus        68 --~~~~D~vi~atG~~~~~~~l~~~~---~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~ia  139 (182)
                        ++++|.||+|+|++|+.+++....   .+..++ +.+ ....+ +..+ .|++|.+|++...  .....+..|++.+|
T Consensus       225 ~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i-~vd~~-~~t~-~~~vya~GD~~~~~~~~~~~A~~~g~~aa  301 (311)
T 2q0l_A          225 KRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSI-VVDFS-MKTN-VQGLFAAGDIRIFAPKQVVCAASDGATAA  301 (311)
T ss_dssp             EEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCB-CCCTT-CBCS-STTEEECSTTBTTCCCCHHHHHHHHHHHH
T ss_pred             eEEEecCEEEEEecCccChhhhhcccccceeEeccCCCE-EeCCc-cccC-CCCeEEcccccCcchHHHHHHHHhHHHHH
Confidence              579999999999999988876531   133332 222 22222 2234 6999999998753  34667788888888


Q ss_pred             HHHc
Q 037525          140 GVLS  143 (182)
Q Consensus       140 ~~l~  143 (182)
                      ..+.
T Consensus       302 ~~i~  305 (311)
T 2q0l_A          302 LSVI  305 (311)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.43  E-value=1.8e-12  Score=111.06  Aligned_cols=142  Identities=16%  Similarity=0.147  Sum_probs=99.4

Q ss_pred             CEEEEcCCccHHHHHHHHhcc---CCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeCC--C--eEE
Q 037525            1 VIILVGSSASAVDICRDLAGV---AKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHDN--G--AVV   62 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~---a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~~--~--~v~   62 (182)
                      +|+|||+|.+|+|+|..|++.   +.+|++++|.+.... ++.         +... -++.....|+++..+  +  .++
T Consensus       193 ~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~  272 (495)
T 2wpf_A          193 RVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVT  272 (495)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEE
Confidence            489999999999999999999   999999999765321 100         0000 134455677787642  2  477


Q ss_pred             EcCCcEEecCEEEEecccccCCCCCC-CCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHH
Q 037525           63 FRNGHTVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIA  139 (182)
Q Consensus        63 ~~dg~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia  139 (182)
                      +.||+++++|.||+|+|++|+.++|. ...++.+++ +.+ ....++- .+ .|++|.+|++... ...+.+..|++.+|
T Consensus       273 ~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i-~Vd~~~~-t~-~~~IyA~GD~~~~~~l~~~A~~~g~~aa  349 (495)
T 2wpf_A          273 FESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGV-QVDEFSR-TN-VPNIYAIGDITDRLMLTPVAINEGAALV  349 (495)
T ss_dssp             ETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSB-CCCTTCB-CS-STTEEECGGGGCSCCCHHHHHHHHHHHH
T ss_pred             ECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCE-EECCCCc-cC-CCCEEEEeccCCCccCHHHHHHHHHHHH
Confidence            88998899999999999999987542 222344442 223 2222222 24 6999999998753 34678899999999


Q ss_pred             HHHcCC
Q 037525          140 GVLSGQ  145 (182)
Q Consensus       140 ~~l~g~  145 (182)
                      ..+.|.
T Consensus       350 ~~i~g~  355 (495)
T 2wpf_A          350 DTVFGN  355 (495)
T ss_dssp             HHHHSS
T ss_pred             HHhcCC
Confidence            999874

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.42  E-value=1.7e-12  Score=110.00  Aligned_cols=139  Identities=17%  Similarity=0.166  Sum_probs=96.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCC-----------CC--CeEEcceeEEeeCCC---eEEEc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPG-----------FD--NMWLHSMIESAHDNG---AVVFR   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~-----------~~--~i~~~~~v~~~~~~~---~v~~~   64 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|++.+. . .++.           ..  ++..+..|+++.+++   .+.+.
T Consensus       173 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~  250 (464)
T 2a8x_A          173 SIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL-P-NEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVT  250 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-T-TSCHHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccc-c-ccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEE
Confidence            58999999999999999999999999999986542 1 1110           01  234456777876432   24554


Q ss_pred             -CC--cEEecCEEEEecccccCCCCCC-CCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHH
Q 037525           65 -NG--HTVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWI  138 (182)
Q Consensus        65 -dg--~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~i  138 (182)
                       +|  +++++|.||+|+|++|+.+++. ...++.+++ +.+ ....++- ++ .|++|.+|++... ...+.+..|++.+
T Consensus       251 ~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i-~vd~~~~-t~-~~~IyA~GD~~~~~~~~~~A~~~g~~a  327 (464)
T 2a8x_A          251 KDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAI-GVDDYMR-TN-VGHIYAIGDVNGLLQLAHVAEAQGVVA  327 (464)
T ss_dssp             SSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSB-CCCTTSB-CS-STTEEECGGGGCSSCSHHHHHHHHHHH
T ss_pred             cCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCE-eECcCCc-cC-CCCEEEeECcCCCccCHHHHHHHHHHH
Confidence             67  5689999999999999988753 112233332 223 2222222 34 6999999998753 3457889999999


Q ss_pred             HHHHcC
Q 037525          139 AGVLSG  144 (182)
Q Consensus       139 a~~l~g  144 (182)
                      |..+.|
T Consensus       328 a~~i~g  333 (464)
T 2a8x_A          328 AETIAG  333 (464)
T ss_dssp             HHHHHT
T ss_pred             HHHhcC
Confidence            999988

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.42  E-value=1.1e-12  Score=111.32  Aligned_cols=142  Identities=13%  Similarity=0.084  Sum_probs=97.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCCC---------CCCC-CCeEEcceeEEeeCC-C--eEEEcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYEK---------QPGF-DNMWLHSMIESAHDN-G--AVVFRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~~---------~~~~-~~i~~~~~v~~~~~~-~--~v~~~dg   66 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++++... .++.         +... -++..+..|+++..+ +  .+.+.||
T Consensus       168 ~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G  247 (463)
T 2r9z_A          168 RVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDG  247 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCC
Confidence            58999999999999999999999999999876532 1110         0000 123345567777632 1  5777899


Q ss_pred             c-EEecCEEEEecccccCCCCCC-CCCceecCC-CccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHHH
Q 037525           67 H-TVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGVL  142 (182)
Q Consensus        67 ~-~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l  142 (182)
                      + ++++|.||+|||++|+.+++. ...++++++ +.+ ....++ .++ .|++|.+|++.. ....+.+..|++.+|..+
T Consensus       248 ~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i-~vd~~~-~t~-~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i  324 (463)
T 2r9z_A          248 TRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMV-PTDAYQ-NTN-VPGVYALGDITGRDQLTPVAIAAGRRLAERL  324 (463)
T ss_dssp             CEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCC-CCCTTS-BCS-STTEEECGGGGTSCCCHHHHHHHHHHHHHHH
T ss_pred             cEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCE-eECCCC-ccC-CCCEEEEeecCCCcccHHHHHHHHHHHHHHH
Confidence            8 899999999999999987652 111233332 222 222222 234 699999999864 334678899999999999


Q ss_pred             cCC
Q 037525          143 SGQ  145 (182)
Q Consensus       143 ~g~  145 (182)
                      .|.
T Consensus       325 ~g~  327 (463)
T 2r9z_A          325 FDG  327 (463)
T ss_dssp             HSC
T ss_pred             cCC
Confidence            874

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.42  E-value=2.7e-12  Score=108.52  Aligned_cols=142  Identities=14%  Similarity=0.188  Sum_probs=97.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeCC-Ce--EEEc--
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHDN-GA--VVFR--   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~~-~~--v~~~--   64 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++++.+.. ++.         +... -++..+..|+++.++ ++  +.+.  
T Consensus       172 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~  251 (455)
T 1ebd_A          172 SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEAN  251 (455)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEET
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeC
Confidence            589999999999999999999999999998765321 100         0001 134445677777642 23  3443  


Q ss_pred             -CCcEEecCEEEEecccccCCCCCC-CCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHH
Q 037525           65 -NGHTVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAG  140 (182)
Q Consensus        65 -dg~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~  140 (182)
                       +++++++|.||+|+|++|+.+++. ...++.+++ +.+ ....++ .++ .|++|.+|++... ...+.+..|++.+|.
T Consensus       252 g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i-~vd~~~-~t~-~~~Iya~GD~~~~~~~~~~A~~~g~~aa~  328 (455)
T 1ebd_A          252 GETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLI-EVDQQC-RTS-VPNIFAIGDIVPGPALAHKASYEGKVAAE  328 (455)
T ss_dssp             TEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCB-CCCTTC-BCS-STTEEECGGGSSSCCCHHHHHHHHHHHHH
T ss_pred             CceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCE-eeCCCc-ccC-CCCEEEEeccCCCcccHHHHHHHHHHHHH
Confidence             456789999999999999988742 222344443 323 222222 234 6999999998753 345678999999999


Q ss_pred             HHcCC
Q 037525          141 VLSGQ  145 (182)
Q Consensus       141 ~l~g~  145 (182)
                      .+.|.
T Consensus       329 ~i~~~  333 (455)
T 1ebd_A          329 AIAGH  333 (455)
T ss_dssp             HHTSC
T ss_pred             HHcCC
Confidence            99875

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.41  E-value=1.2e-12  Score=113.37  Aligned_cols=142  Identities=12%  Similarity=0.150  Sum_probs=97.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeC------------
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHD------------   57 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~------------   57 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|++.... ++.         +... -++.....|+++..            
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~  232 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAG  232 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGT
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccc
Confidence            589999999999999999999999999999875421 000         0000 12344556666653            


Q ss_pred             --------CC--eEEEcCCcEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCC--
Q 037525           58 --------NG--AVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK--  124 (182)
Q Consensus        58 --------~~--~v~~~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~--  124 (182)
                              ++  .+++.||+++++|.||+|||++|+.+++.. .++.+++ +.+ ....++ .++ .|++|.+|++..  
T Consensus       233 ~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~-~g~~~~~~g~i-~vd~~~-~t~-~~~IyA~GD~~~~~  308 (565)
T 3ntd_A          233 EDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARD-AGLAIGELGGI-KVNAMM-QTS-DPAIYAVGDAVEEQ  308 (565)
T ss_dssp             CCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCHHHHH-HTCCBCTTSSB-CCCTTC-BCS-STTEEECGGGBCEE
T ss_pred             cccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchHHHHh-CCcccCCCCCE-EECCCc-ccC-CCCEEEeeeeEeec
Confidence                    22  356778988999999999999999776543 2233332 222 222222 234 699999999852  


Q ss_pred             ----c-----ccccHHHHHHHHHHHHHcCCC
Q 037525          125 ----V-----IPFPLCEYQSKWIAGVLSGQI  146 (182)
Q Consensus       125 ----~-----~~~~~~e~qa~~ia~~l~g~~  146 (182)
                          +     .....+..|++.+|..+.|+.
T Consensus       309 ~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  339 (565)
T 3ntd_A          309 DFVTGQACLVPLAGPANRQGRMAADNMFGRE  339 (565)
T ss_dssp             BTTTCCEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             cccCCceeecccHHHHHHHHHHHHHHhcCCC
Confidence                1     135678999999999999863

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.41  E-value=3.5e-12  Score=108.10  Aligned_cols=142  Identities=14%  Similarity=0.124  Sum_probs=98.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeCCC---eEEEc--
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHDNG---AVVFR--   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~~~---~v~~~--   64 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++++.+.. .+.         +... -++.....|+++.+++   .+.+.  
T Consensus       179 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~  258 (470)
T 1dxl_A          179 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPS  258 (470)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEES
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEec
Confidence            589999999999999999999999999999865421 000         0000 1344556788886532   34554  


Q ss_pred             -CC--cEEecCEEEEecccccCCCCCC-CCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHH
Q 037525           65 -NG--HTVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWI  138 (182)
Q Consensus        65 -dg--~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~i  138 (182)
                       +|  +++++|.||+|+|++|+.+++. ...++.+++ +.+ ....++- ++ .|++|.+|++... ...+.+..|++.+
T Consensus       259 ~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i-~vd~~~~-t~-~~~Iya~GD~~~~~~~~~~A~~~g~~a  335 (470)
T 1dxl_A          259 AGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRI-LVNERFS-TN-VSGVYAIGDVIPGPMLAHKAEEDGVAC  335 (470)
T ss_dssp             SSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCB-CCCTTCB-CS-STTEEECSTTSSSCCCHHHHHHHHHHH
T ss_pred             CCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCE-eECcCCc-cC-CCCEEEEeccCCCCccHHHHHHHHHHH
Confidence             55  5689999999999999988742 223344443 323 2222222 34 6999999998753 3456789999999


Q ss_pred             HHHHcCC
Q 037525          139 AGVLSGQ  145 (182)
Q Consensus       139 a~~l~g~  145 (182)
                      |..+.|.
T Consensus       336 a~~i~g~  342 (470)
T 1dxl_A          336 VEYLAGK  342 (470)
T ss_dssp             HHHHTTS
T ss_pred             HHHHcCC
Confidence            9999875

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.40  E-value=8e-13  Score=111.30  Aligned_cols=140  Identities=14%  Similarity=0.210  Sum_probs=98.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCC-----------CC--CeEEcceeEEeeC--C-C---eE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPG-----------FD--NMWLHSMIESAHD--N-G---AV   61 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~-----------~~--~i~~~~~v~~~~~--~-~---~v   61 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++.+... ...++.           ..  ++.....|+++..  + +   .|
T Consensus       151 ~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l-~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v  229 (431)
T 1q1r_A          151 RLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL-ERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAV  229 (431)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT-TTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccc-cchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEE
Confidence            48999999999999999999999999999876532 110110           01  2344567777764  2 2   47


Q ss_pred             EEcCCcEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCCcc-----------cccH
Q 037525           62 VFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVI-----------PFPL  130 (182)
Q Consensus        62 ~~~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~-----------~~~~  130 (182)
                      .+.||+++++|.||+|+|++|+.+++... ++..+++ + ....++ .++ .|++|.+|++....           .++.
T Consensus       230 ~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~-gl~~~~g-i-~Vd~~~-~ts-~~~IyA~GD~~~~~~~~~g~~~~~~~~~~  304 (431)
T 1q1r_A          230 LCEDGTRLPADLVIAGIGLIPNCELASAA-GLQVDNG-I-VINEHM-QTS-DPLIMAVGDCARFHSQLYDRWVRIESVPN  304 (431)
T ss_dssp             EETTSCEEECSEEEECCCEEECCHHHHHT-TCCBSSS-E-ECCTTS-BCS-STTEEECGGGEEEEETTTTEEEECCSHHH
T ss_pred             EeCCCCEEEcCEEEECCCCCcCcchhhcc-CCCCCCC-E-EECCCc-ccC-CCCEEEEEeEEEEccccCCceEeeCHHHH
Confidence            78899889999999999999998776542 3343322 2 222222 224 69999999986321           3467


Q ss_pred             HHHHHHHHHHHHcCCC
Q 037525          131 CEYQSKWIAGVLSGQI  146 (182)
Q Consensus       131 ~e~qa~~ia~~l~g~~  146 (182)
                      +..|++.+|..+.|..
T Consensus       305 A~~qg~~aa~~i~g~~  320 (431)
T 1q1r_A          305 ALEQARKIAAILCGKV  320 (431)
T ss_dssp             HHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            9999999999999863

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.40  E-value=3.9e-12  Score=108.78  Aligned_cols=140  Identities=14%  Similarity=0.101  Sum_probs=99.1

Q ss_pred             CEEEEcCCccHHHHHHHHhcc---CCeEEEEeccCCCCCCCCCCC-----------CC--CeEEcceeEEeeCC--C--e
Q 037525            1 VIILVGSSASAVDICRDLAGV---AKEVHLVSRSVADGTYEKQPG-----------FD--NMWLHSMIESAHDN--G--A   60 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~---a~~V~l~~r~~~~~~~~~~~~-----------~~--~i~~~~~v~~~~~~--~--~   60 (182)
                      +|+|||+|++|+|+|..|++.   +.+|++++|.+... . .++.           ..  ++..+..|+++..+  +  .
T Consensus       189 ~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l-~-~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~  266 (490)
T 1fec_A          189 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-R-GFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRH  266 (490)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-T-TSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc-c-ccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEE
Confidence            489999999999999999999   99999999986532 1 1110           01  23445677777642  2  4


Q ss_pred             EEEcCCcEEecCEEEEecccccCCCCCC-CCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHH
Q 037525           61 VVFRNGHTVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKW  137 (182)
Q Consensus        61 v~~~dg~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~  137 (182)
                      +.+.||+++++|.||+|+|++|+.++|. ...++.+++ +.+ ....++- .+ .|++|.+|++... ...+.+..|++.
T Consensus       267 v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I-~Vd~~~~-t~-~~~IyA~GD~~~~~~l~~~A~~~g~~  343 (490)
T 1fec_A          267 VVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAI-KVDAYSK-TN-VDNIYAIGDVTDRVMLTPVAINEGAA  343 (490)
T ss_dssp             EEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCB-CCCTTCB-CS-STTEEECGGGGCSCCCHHHHHHHHHH
T ss_pred             EEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCE-EECCCCc-cC-CCCEEEEeccCCCccCHHHHHHHHHH
Confidence            6778898899999999999999987552 222344442 223 2222222 24 6999999998753 356788999999


Q ss_pred             HHHHHcCC
Q 037525          138 IAGVLSGQ  145 (182)
Q Consensus       138 ia~~l~g~  145 (182)
                      ++..+.|.
T Consensus       344 aa~~i~g~  351 (490)
T 1fec_A          344 FVDTVFAN  351 (490)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHhcCC
Confidence            99999874

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.40  E-value=4.4e-12  Score=108.53  Aligned_cols=142  Identities=14%  Similarity=0.084  Sum_probs=98.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeCCC-e--EEEcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHDNG-A--VVFRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~~~-~--v~~~dg   66 (182)
                      +|+|||+|.+|+|+|..+++.+.+|+++.+.+.... ++.         +... -++..+..|+++..++ +  +.+.||
T Consensus       184 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g  263 (499)
T 1xdi_A          184 HLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDG  263 (499)
T ss_dssp             SEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCC
Confidence            589999999999999999999999999998765421 000         0000 1233456777776432 2  455678


Q ss_pred             cEEecCEEEEecccccCCCCCC-CCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHc
Q 037525           67 HTVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus        67 ~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~  143 (182)
                      +++++|.||+|+|++|+.+++. ...+++++. +.+ .....+- .+ .|++|.+|++... ...+.+..|++.+|..+.
T Consensus       264 ~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i-~Vd~~~~-t~-~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~  340 (499)
T 1xdi_A          264 RTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYL-TVDRVSR-TL-ATGIYAAGDCTGLLPLASVAAMQGRIAMYHAL  340 (499)
T ss_dssp             CEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBC-CCCSSSB-CS-STTEEECSGGGTSCSCHHHHHHHHHHHHHHHT
T ss_pred             cEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCE-EECCCcc-cC-CCCEEEEeccCCCcccHHHHHHHHHHHHHHhc
Confidence            8899999999999999988842 223444443 323 2222222 24 6999999998753 345688999999999999


Q ss_pred             CC
Q 037525          144 GQ  145 (182)
Q Consensus       144 g~  145 (182)
                      |.
T Consensus       341 g~  342 (499)
T 1xdi_A          341 GE  342 (499)
T ss_dssp             TC
T ss_pred             CC
Confidence            86

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.40  E-value=1.4e-12  Score=111.10  Aligned_cols=141  Identities=10%  Similarity=0.101  Sum_probs=98.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCCCCe--EEcceeEEeeCC-C--eEEEcC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGFDNM--WLHSMIESAHDN-G--AVVFRN   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~~~i--~~~~~v~~~~~~-~--~v~~~d   65 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++.+.... ++         .+. ...|  ..+..|+++..+ +  .+++.|
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~~v~~~~  265 (482)
T 1ojt_A          187 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNE-YRFDNIMVNTKTVAVEPKEDGVYVTFEG  265 (482)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHG-GGEEEEECSCEEEEEEEETTEEEEEEES
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccccCHHHHHHHHHHHH-hcCCEEEECCEEEEEEEcCCeEEEEEec
Confidence            589999999999999999999999999999765421 00         000 1123  344577777532 2  467777


Q ss_pred             ----CcEEecCEEEEecccccCCCCCC-CCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHH
Q 037525           66 ----GHTVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWI  138 (182)
Q Consensus        66 ----g~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~i  138 (182)
                          |+++++|.||+|+|++|+.+++. ...++.+++ +.+ ....++- .+ .|++|.+|++... ...+.+..|++.+
T Consensus       266 ~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i-~vd~~~~-t~-~~~IyA~GD~~~~~~l~~~A~~~g~~a  342 (482)
T 1ojt_A          266 ANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFI-EVDKQMR-TN-VPHIYAIGDIVGQPMLAHKAVHEGHVA  342 (482)
T ss_dssp             SSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCC-CCCTTSB-CS-STTEEECGGGTCSSCCHHHHHHHHHHH
T ss_pred             cCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCE-eeCCCcc-cC-CCCEEEEEcccCCCccHHHHHHHHHHH
Confidence                77789999999999999987752 222344443 223 2222222 24 6999999998753 3467899999999


Q ss_pred             HHHHcCC
Q 037525          139 AGVLSGQ  145 (182)
Q Consensus       139 a~~l~g~  145 (182)
                      |..+.|.
T Consensus       343 a~~i~g~  349 (482)
T 1ojt_A          343 AENCAGH  349 (482)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            9999875

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.40  E-value=1.2e-12  Score=111.14  Aligned_cols=141  Identities=13%  Similarity=0.092  Sum_probs=98.1

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccCCCCCCCCCCC-----------CCC--eEEcceeEEeeC-CCe--EEE
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSVADGTYEKQPG-----------FDN--MWLHSMIESAHD-NGA--VVF   63 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~~~~~~~~~~~-----------~~~--i~~~~~v~~~~~-~~~--v~~   63 (182)
                      +|+|||+|++|+|+|..|++. +.+|+++.|.+.+.. ..++.           ...  +..+..|+++.. ++.  +++
T Consensus       161 ~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~-~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~  239 (472)
T 3iwa_A          161 KAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMP-GFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVI  239 (472)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSST-TTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccc-cccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEE
Confidence            489999999999999999999 999999998765421 01110           012  334457788764 333  677


Q ss_pred             cCCcEEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCC------c-----ccccHH
Q 037525           64 RNGHTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK------V-----IPFPLC  131 (182)
Q Consensus        64 ~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~------~-----~~~~~~  131 (182)
                      .||+++++|.||+|||+.++.+++.. .++.++. +.+ ....++- ++ .|++|.+|++..      +     .....+
T Consensus       240 ~~g~~i~aD~Vv~a~G~~p~~~l~~~-~gl~~~~~g~i-~vd~~~~-t~-~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A  315 (472)
T 3iwa_A          240 TDKRTLDADLVILAAGVSPNTQLARD-AGLELDPRGAI-IVDTRMR-TS-DPDIFAGGDCVTIPNLVTGKPGFFPLGSMA  315 (472)
T ss_dssp             ESSCEEECSEEEECSCEEECCHHHHH-HTCCBCTTCCE-ECCTTCB-CS-STTEEECGGGEEEEBTTTSSEECCCCTTHH
T ss_pred             eCCCEEEcCEEEECCCCCcCHHHHHh-CCccCCCCCCE-EECCCcc-cC-CCCEEEeccceecccccCCceeecchHHHH
Confidence            89989999999999999998776532 2334332 222 2222222 24 699999999851      1     245789


Q ss_pred             HHHHHHHHHHHcCCC
Q 037525          132 EYQSKWIAGVLSGQI  146 (182)
Q Consensus       132 e~qa~~ia~~l~g~~  146 (182)
                      ..|++.+|..+.|..
T Consensus       316 ~~~g~~aa~~i~g~~  330 (472)
T 3iwa_A          316 NRQGRVIGTNLADGD  330 (472)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhcCCC
Confidence            999999999999863

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.40  E-value=1.1e-12  Score=105.94  Aligned_cols=139  Identities=16%  Similarity=0.115  Sum_probs=91.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC----CC---CCCCeE--EcceeEEeeCCC---eEEEc---C
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK----QP---GFDNMW--LHSMIESAHDNG---AVVFR---N   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~----~~---~~~~i~--~~~~v~~~~~~~---~v~~~---d   65 (182)
                      +|+|||+|++|+|+|..|++.+++|++++|++.+.....    +.   ...++.  ....|.++.+++   +|.+.   +
T Consensus       154 ~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~  233 (335)
T 2zbw_A          154 RVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQT  233 (335)
T ss_dssp             EEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSCHHHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTT
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCccHHHHHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCC
Confidence            589999999999999999999999999999875421100    00   001333  345677776532   57776   7


Q ss_pred             C--cEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCCc----ccccHHHHHHHHHH
Q 037525           66 G--HTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV----IPFPLCEYQSKWIA  139 (182)
Q Consensus        66 g--~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~----~~~~~~e~qa~~ia  139 (182)
                      |  +++++|.||+|+|++++.+++... .+..+++.+ ..... +.++ .|++|++|++...    .....+..|++.+|
T Consensus       234 g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~~~~~g~i-~vd~~-~~t~-~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa  309 (335)
T 2zbw_A          234 QEELALEVDAVLILAGYITKLGPLANW-GLALEKNKI-KVDTT-MATS-IPGVYACGDIVTYPGKLPLIVLGFGEAAIAA  309 (335)
T ss_dssp             CCEEEEECSEEEECCCEEEECGGGGGS-CCCEETTEE-ECCTT-CBCS-STTEEECSTTEECTTCCCCHHHHHHHHHHHH
T ss_pred             CceEEEecCEEEEeecCCCCchHhhhc-ceeccCCee-eeCCC-CCCC-CCCEEEeccccccCcchhhhhhhHHHHHHHH
Confidence            7  468999999999999998777642 233333333 22222 2234 6999999998631    23445556666666


Q ss_pred             HHHc
Q 037525          140 GVLS  143 (182)
Q Consensus       140 ~~l~  143 (182)
                      ..+.
T Consensus       310 ~~i~  313 (335)
T 2zbw_A          310 NHAA  313 (335)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6553

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.40  E-value=3.5e-12  Score=107.76  Aligned_cols=139  Identities=16%  Similarity=0.188  Sum_probs=98.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCC------------CC-CCeEEcceeEEeeC-CCeE--EEc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQP------------GF-DNMWLHSMIESAHD-NGAV--VFR   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~------------~~-~~i~~~~~v~~~~~-~~~v--~~~   64 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++.+.+.. ..++            .. -++..+..|+++.. ++.+  +..
T Consensus       151 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~  229 (452)
T 2cdu_A          151 TITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY-KYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL  229 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT-TTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEET
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh-hhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe
Confidence            589999999999999999999999999998765421 0111            00 13445667888764 3333  234


Q ss_pred             CCcEEecCEEEEecccccCCCCCCCCCceecCC-Ccc-ccccccccCCCCCCCEEEEeccCCc-----------ccccHH
Q 037525           65 NGHTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRV-GPLYKHVFPPVLAPWLSFVGLPWKV-----------IPFPLC  131 (182)
Q Consensus        65 dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~-~~ly~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~  131 (182)
                      ||+++++|.||+|+|++|+.++++..  +.+++ +.+ .+.|..+   + .|++|.+|++...           ..++.+
T Consensus       230 ~g~~i~~D~vv~a~G~~p~~~ll~~~--l~~~~~G~i~Vd~~~~t---~-~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A  303 (452)
T 2cdu_A          230 DGKEIKSDIAILCIGFRPNTELLKGK--VAMLDNGAIITDEYMHS---S-NRDIFAAGDSAAVHYNPTNSNAYIPLATNA  303 (452)
T ss_dssp             TSCEEEESEEEECCCEEECCGGGTTT--SCBCTTSCBCCCTTSBC---S-STTEEECSTTBCEEETTTTEEECCCCHHHH
T ss_pred             CCCEEECCEEEECcCCCCCHHHHHHh--hhcCCCCCEEECCCcCc---C-CCCEEEcceEEEeccccCCCeeecchHHHH
Confidence            78889999999999999998877542  44432 223 1233332   4 6999999998642           245788


Q ss_pred             HHHHHHHHHHHcCCC
Q 037525          132 EYQSKWIAGVLSGQI  146 (182)
Q Consensus       132 e~qa~~ia~~l~g~~  146 (182)
                      ..|++.+|..+.|..
T Consensus       304 ~~~g~~aa~~i~g~~  318 (452)
T 2cdu_A          304 VRQGRLVGLNLTEDK  318 (452)
T ss_dssp             HHHHHHHHHTSSSCC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999999998763

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.40  E-value=1.2e-12  Score=113.97  Aligned_cols=140  Identities=12%  Similarity=0.177  Sum_probs=98.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCC-CC---------CCCC-CCeEEcceeEEeeCC-CeEEEcCCcE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTY-EK---------QPGF-DNMWLHSMIESAHDN-GAVVFRNGHT   68 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~-~~---------~~~~-~~i~~~~~v~~~~~~-~~v~~~dg~~   68 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++.+.+..... +.         +... -++..+..|+++..+ ++|++.||++
T Consensus       189 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~  268 (588)
T 3ics_A          189 HATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAVVRLKSGSV  268 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTEEEETTSCE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCCEEEECCCCE
Confidence            4899999999999999999999999999987643210 00         0000 123445678888642 3799999999


Q ss_pred             EecCEEEEecccccCCCCCCCCCceecCCC-ccccccccccCCCCCCCEEEEeccCC------c-----ccccHHHHHHH
Q 037525           69 VHADVILHCTGYKYHFPFLETNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWK------V-----IPFPLCEYQSK  136 (182)
Q Consensus        69 ~~~D~vi~atG~~~~~~~l~~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~------~-----~~~~~~e~qa~  136 (182)
                      +++|.||+|||++++.++++.. ++.+++. .+ ....++- .+ .|++|.+|++..      +     .....+..|++
T Consensus       269 i~~D~Vi~a~G~~p~~~~l~~~-g~~~~~~g~i-~vd~~~~-t~-~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~  344 (588)
T 3ics_A          269 IQTDMLILAIGVQPESSLAKGA-GLALGVRGTI-KVNEKFQ-TS-DPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGR  344 (588)
T ss_dssp             EECSEEEECSCEEECCHHHHHT-TCCBCGGGCB-CCCTTSB-CS-STTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHH
T ss_pred             EEcCEEEEccCCCCChHHHHhc-CceEcCCCCE-EECCccc-cC-CCCEEEeeeeeecccccCCcccccccHHHHHHHHH
Confidence            9999999999999998766432 3333322 22 2222222 24 699999999862      1     23457899999


Q ss_pred             HHHHHHcC
Q 037525          137 WIAGVLSG  144 (182)
Q Consensus       137 ~ia~~l~g  144 (182)
                      .+|..+.|
T Consensus       345 ~aa~~i~g  352 (588)
T 3ics_A          345 MLADIIHG  352 (588)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhcC
Confidence            99999998

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.40  E-value=2.9e-12  Score=108.95  Aligned_cols=141  Identities=14%  Similarity=0.117  Sum_probs=97.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeC--CC---eEEEc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHD--NG---AVVFR   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~--~~---~v~~~   64 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|++.+.. ++.         +... -++.....|+++..  ++   .+.+.
T Consensus       185 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~  264 (478)
T 1v59_A          185 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVE  264 (478)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEE
Confidence            589999999999999999999999999999865421 000         0000 12334567777764  22   35565


Q ss_pred             -----CCcEEecCEEEEecccccCCC--CCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHH
Q 037525           65 -----NGHTVHADVILHCTGYKYHFP--FLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQS  135 (182)
Q Consensus        65 -----dg~~~~~D~vi~atG~~~~~~--~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa  135 (182)
                           +++++++|.||+|+|++|+.+  ++.. .++.+++ +.+ ....++- ++ .|++|.+|++... ...+.+..|+
T Consensus       265 ~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~-~g~~~~~~G~i-~vd~~~~-t~-~~~IyA~GD~~~~~~~~~~A~~~g  340 (478)
T 1v59_A          265 DTKTNKQENLEAEVLLVAVGRRPYIAGLGAEK-IGLEVDKRGRL-VIDDQFN-SK-FPHIKVVGDVTFGPMLAHKAEEEG  340 (478)
T ss_dssp             ETTTTEEEEEEESEEEECSCEEECCTTSCTTT-TTCCBCTTSCB-CCCTTSB-CS-STTEEECGGGSSSCCCHHHHHHHH
T ss_pred             EcCCCCceEEECCEEEECCCCCcCCCCCCchh-cCceeCCCCCE-eECcCCc-cC-CCCEEEeeccCCCcccHHHHHHHH
Confidence                 345789999999999999987  5554 3444442 323 2222222 34 6999999998753 3456889999


Q ss_pred             HHHHHHHcCC
Q 037525          136 KWIAGVLSGQ  145 (182)
Q Consensus       136 ~~ia~~l~g~  145 (182)
                      +.+|..+.|.
T Consensus       341 ~~aa~~i~~~  350 (478)
T 1v59_A          341 IAAVEMLKTG  350 (478)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHcCC
Confidence            9999999874

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.39  E-value=6.7e-12  Score=106.62  Aligned_cols=143  Identities=12%  Similarity=0.099  Sum_probs=97.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCCC-CeEEcceeEEeeCC-C--eEEEcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGFD-NMWLHSMIESAHDN-G--AVVFRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~~-~i~~~~~v~~~~~~-~--~v~~~dg   66 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|++.+.. ++.         +...+ ++.....|+++..+ +  .+.+.++
T Consensus       182 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~  261 (476)
T 3lad_A          182 KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDA  261 (476)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeC
Confidence            489999999999999999999999999999865421 000         00000 23445677777632 2  3666654


Q ss_pred             ---cEEecCEEEEecccccCCCCC-CCCCceecCCC-ccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHH
Q 037525           67 ---HTVHADVILHCTGYKYHFPFL-ETNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAG  140 (182)
Q Consensus        67 ---~~~~~D~vi~atG~~~~~~~l-~~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~  140 (182)
                         +.+++|.||+|+|++|+.+++ -...++.+++. .+ .....+- ++ .|++|.+|++.. ......+..|++.++.
T Consensus       262 ~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i-~vd~~~~-t~-~~~Iya~GD~~~~~~~~~~A~~~g~~aa~  338 (476)
T 3lad_A          262 EGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFI-YVDDYCA-TS-VPGVYAIGDVVRGAMLAHKASEEGVVVAE  338 (476)
T ss_dssp             SEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCB-CCCTTSB-CS-STTEEECGGGSSSCCCHHHHHHHHHHHHH
T ss_pred             CCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCE-eeCCCcc-cC-CCCEEEEEccCCCcccHHHHHHHHHHHHH
Confidence               568999999999999998764 22233444432 22 2222222 34 699999999874 3346788999999999


Q ss_pred             HHcCCC
Q 037525          141 VLSGQI  146 (182)
Q Consensus       141 ~l~g~~  146 (182)
                      .+.|+.
T Consensus       339 ~i~g~~  344 (476)
T 3lad_A          339 RIAGHK  344 (476)
T ss_dssp             HHHHCC
T ss_pred             HhcCCC
Confidence            998753

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.39  E-value=3.2e-12  Score=102.08  Aligned_cols=138  Identities=15%  Similarity=0.148  Sum_probs=92.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCCeE--EcceeEEeeCC-C---eEEEcC---Cc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDNMW--LHSMIESAHDN-G---AVVFRN---GH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~i~--~~~~v~~~~~~-~---~v~~~d---g~   67 (182)
                      +|+|||+|++|+|+|.+|++.+++|++++|++.+....    .+....++.  .+..++++.++ +   ++++.+   |+
T Consensus       146 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~  225 (310)
T 1fl2_A          146 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGD  225 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCC
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCccHHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCc
Confidence            58999999999999999999999999999987653110    011112344  34577777643 2   467764   54


Q ss_pred             --EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCcc--cccHHHHHHHHHHHHH
Q 037525           68 --TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKVI--PFPLCEYQSKWIAGVL  142 (182)
Q Consensus        68 --~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~ia~~l  142 (182)
                        ++++|.||+|+|+.|+.+++...  +..++ +.+ ....++ .++ .|++|.+|++....  ....+..|++.+|..+
T Consensus       226 ~~~i~~D~vi~a~G~~p~~~~l~~~--l~~~~~g~i-~vd~~~-~t~-~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i  300 (310)
T 1fl2_A          226 IHNIELAGIFVQIGLLPNTNWLEGA--VERNRMGEI-IIDAKC-ETN-VKGVFAAGDCTTVPYKQIIIATGEGAKASLSA  300 (310)
T ss_dssp             EEEEECSEEEECSCEEESCGGGTTT--SCBCTTSCB-CCCTTC-BCS-STTEEECSTTBSCSSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCEEEEeeCCccCchHHhcc--ccccCCCcE-EcCCCC-ccC-CCCEEEeecccCCcchhhhhhHhhHHHHHHHH
Confidence              57899999999999998887642  33332 222 222222 234 69999999987532  3456666777766655


Q ss_pred             c
Q 037525          143 S  143 (182)
Q Consensus       143 ~  143 (182)
                      .
T Consensus       301 ~  301 (310)
T 1fl2_A          301 F  301 (310)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.39  E-value=4e-12  Score=107.78  Aligned_cols=141  Identities=13%  Similarity=0.135  Sum_probs=98.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeCC--C--eEE-Ec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHDN--G--AVV-FR   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~~--~--~v~-~~   64 (182)
                      +|+|||+|++|+|+|..+++.+.+|+++++.+.+.. .+.         +... -++..+..|+++..+  +  .|. +.
T Consensus       172 ~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~  251 (463)
T 4dna_A          172 SILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMK  251 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcC
Confidence            489999999999999999999999999998765321 100         0000 133445677777642  2  466 77


Q ss_pred             CCcEEecCEEEEecccccCCCCCC-CCCceecCCC-ccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHH
Q 037525           65 NGHTVHADVILHCTGYKYHFPFLE-TNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGV  141 (182)
Q Consensus        65 dg~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~  141 (182)
                      ||+ +++|.||+|+|+.|+.+++. ...++++++. .+ ....++- ++ .|++|.+|++... ...+.+..|++.++..
T Consensus       252 ~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i-~vd~~~~-t~-~~~iya~GD~~~~~~~~~~A~~~g~~aa~~  327 (463)
T 4dna_A          252 HGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAI-IVDAFSR-TS-TPGIYALGDVTDRVQLTPVAIHEAMCFIET  327 (463)
T ss_dssp             SCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCB-CCCTTCB-CS-STTEEECSGGGSSCCCHHHHHHHHHHHHHH
T ss_pred             CCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCE-eECcCCC-CC-CCCEEEEEecCCCCCChHHHHHHHHHHHHH
Confidence            887 99999999999999988753 1123444432 22 2222222 34 6999999998753 3457889999999999


Q ss_pred             HcCC
Q 037525          142 LSGQ  145 (182)
Q Consensus       142 l~g~  145 (182)
                      +.|.
T Consensus       328 i~g~  331 (463)
T 4dna_A          328 EYKN  331 (463)
T ss_dssp             HHSS
T ss_pred             HcCC
Confidence            9875

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.39  E-value=2.8e-12  Score=108.70  Aligned_cols=139  Identities=12%  Similarity=0.107  Sum_probs=97.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCC-----------CCC--eEEcceeEEeeCCCeEEEc--C
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPG-----------FDN--MWLHSMIESAHDNGAVVFR--N   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~-----------~~~--i~~~~~v~~~~~~~~v~~~--d   65 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++++... . .++.           ...  +..+..|+++.. +.+.+.  +
T Consensus       173 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~~v~v~~~~  249 (458)
T 1lvl_A          173 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL-P-TYDSELTAPVAESLKKLGIALHLGHSVEGYEN-GCLLANDGK  249 (458)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS-T-TSCHHHHHHHHHHHHHHTCEEETTCEEEEEET-TEEEEECSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccc-c-ccCHHHHHHHHHHHHHCCCEEEECCEEEEEEe-CCEEEEECC
Confidence            58999999999999999999999999999876542 1 1110           012  334567788876 345555  5


Q ss_pred             C--cEEecCEEEEecccccCCCCCC-CCCceecCCCccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHH
Q 037525           66 G--HTVHADVILHCTGYKYHFPFLE-TNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGV  141 (182)
Q Consensus        66 g--~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~  141 (182)
                      |  +++++|.||+|||++|+.+++. ...++.+++..+ ....++ .++ .|++|.+|++... .....+..|++.+|..
T Consensus       250 G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~~i-~vd~~~-~t~-~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~  326 (458)
T 1lvl_A          250 GGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAI-AIDERC-QTS-MHNVWAIGDVAGEPMLAHRAMAQGEMVAEI  326 (458)
T ss_dssp             SCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETTEE-CCCTTC-BCS-STTEEECGGGGCSSCCHHHHHHHHHHHHHH
T ss_pred             CceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCCEE-eECCCC-cCC-CCCEEEeeccCCCcccHHHHHHHHHHHHHH
Confidence            7  5789999999999999988752 212333332222 233332 234 6999999998643 3457889999999999


Q ss_pred             HcCC
Q 037525          142 LSGQ  145 (182)
Q Consensus       142 l~g~  145 (182)
                      +.|.
T Consensus       327 i~g~  330 (458)
T 1lvl_A          327 IAGK  330 (458)
T ss_dssp             HTTC
T ss_pred             hcCC
Confidence            9975

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.39  E-value=1.2e-12  Score=106.88  Aligned_cols=147  Identities=19%  Similarity=0.130  Sum_probs=91.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCC---CCCeEE--cceeEEeeCC-C---eEEEc--C
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPG---FDNMWL--HSMIESAHDN-G---AVVFR--N   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~---~~~i~~--~~~v~~~~~~-~---~v~~~--d   65 (182)
                      +|+|||+|++|+|+|..|++.+++|++++|++.+....    .+..   ..++.+  ...|.++..+ +   +|++.  +
T Consensus       165 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~  244 (360)
T 3ab1_A          165 RVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSD  244 (360)
T ss_dssp             EEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCSHHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETT
T ss_pred             cEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCHHHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecC
Confidence            58999999999999999999999999999987543211    0100   012433  3467777642 2   56775  7


Q ss_pred             C--cEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCCc----ccccHHHHHHHHHH
Q 037525           66 G--HTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV----IPFPLCEYQSKWIA  139 (182)
Q Consensus        66 g--~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~----~~~~~~e~qa~~ia  139 (182)
                      |  +.+++|.||+|+|+.++.+++... .+..+++.+ .....+ ..+ .|++|.+|++...    .....+..|++.+|
T Consensus       245 g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~~~~~g~i-~vd~~~-~t~-~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa  320 (360)
T 3ab1_A          245 GSKWTVEADRLLILIGFKSNLGPLARW-DLELYENAL-VVDSHM-KTS-VDGLYAAGDIAYYPGKLKIIQTGLSEATMAV  320 (360)
T ss_dssp             CCEEEEECSEEEECCCBCCSCGGGGGS-SCCEETTEE-ECCTTS-BCS-STTEEECSTTEECTTCCCSHHHHHHHHHHHH
T ss_pred             CCeEEEeCCEEEECCCCCCCHHHHHhh-ccccccCee-eecCCC-cCC-CCCEEEecCccCCCCccceeehhHHHHHHHH
Confidence            7  467999999999999998877642 233333333 222222 224 6999999998631    23445566666666


Q ss_pred             HHH----cCCCCCCCH
Q 037525          140 GVL----SGQIVLPSQ  151 (182)
Q Consensus       140 ~~l----~g~~~lP~~  151 (182)
                      ..+    .+....|+.
T Consensus       321 ~~i~~~l~~~~~~~~~  336 (360)
T 3ab1_A          321 RHSLSYIKPGEKIRNV  336 (360)
T ss_dssp             HHHHHHHSCC------
T ss_pred             HHHHhhcCCccccCce
Confidence            555    454444443

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.38  E-value=1.7e-12  Score=109.54  Aligned_cols=142  Identities=12%  Similarity=0.138  Sum_probs=98.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC--CC---------CCCCCCCeEEcceeEEeeCCCe--EEEcCCc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT--YE---------KQPGFDNMWLHSMIESAHDNGA--VVFRNGH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~--~~---------~~~~~~~i~~~~~v~~~~~~~~--v~~~dg~   67 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|++.+..  ++         .+...-++.....+.++.+++.  .++.||+
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~v~i~~~~~v~~i~~~~~v~~v~~~g~  229 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKHVNLRLQEITMKIEGEERVEKVVTDAG  229 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTTSEEEESCCEEEEECSSSCCEEEETTE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCcEEEeCCeEEEEeccCcEEEEEeCCC
Confidence            589999999999999999999999999999875421  11         0111113344567777765332  3566888


Q ss_pred             EEecCEEEEecccccCCCCCCCCCceecCCC-ccccccccccCCCCCCCEEEEeccCC------c-----ccccHHHHHH
Q 037525           68 TVHADVILHCTGYKYHFPFLETNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWK------V-----IPFPLCEYQS  135 (182)
Q Consensus        68 ~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~------~-----~~~~~~e~qa  135 (182)
                      ++++|.||+|+|++|+.++++. .++++++. .+ ....++ .++ .|++|.+|++..      +     ...+.+..|+
T Consensus       230 ~i~~D~Vv~a~G~~p~~~l~~~-~gl~~~~~G~i-~vd~~~-~t~-~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g  305 (449)
T 3kd9_A          230 EYKAELVILATGIKPNIELAKQ-LGVRIGETGAI-WTNEKM-QTS-VENVYAAGDVAETRHVITGRRVWVPLAPAGNKMG  305 (449)
T ss_dssp             EEECSEEEECSCEEECCHHHHH-TTCCBCTTSSB-CCCTTC-BCS-STTEEECSTTBCEEBTTTCSEECCCCHHHHHHHH
T ss_pred             EEECCEEEEeeCCccCHHHHHh-CCccCCCCCCE-EECCCC-ccC-CCCEEEeeeeeeeccccCCceEEeccHHHHHHHH
Confidence            8999999999999999876543 23444332 22 222222 224 699999999852      1     2356889999


Q ss_pred             HHHHHHHcCCC
Q 037525          136 KWIAGVLSGQI  146 (182)
Q Consensus       136 ~~ia~~l~g~~  146 (182)
                      +.++..+.|..
T Consensus       306 ~~aa~~i~g~~  316 (449)
T 3kd9_A          306 YVAGSNIAGKE  316 (449)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHhcCCC
Confidence            99999999863

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.38  E-value=3.9e-12  Score=107.57  Aligned_cols=142  Identities=13%  Similarity=0.101  Sum_probs=96.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeCC-Ce--EEEcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHDN-GA--VVFRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~~-~~--v~~~dg   66 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++++.+.. .+.         +... -++..+..|+++..+ ++  +.+.||
T Consensus       169 ~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g  248 (455)
T 2yqu_A          169 RLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGG  248 (455)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCC
Confidence            489999999999999999999999999998765321 000         0000 123445677777632 23  445588


Q ss_pred             cEEecCEEEEecccccCCCCCC-CCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHc
Q 037525           67 HTVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus        67 ~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~  143 (182)
                      +++++|.||+|||++++.+++. ...++..++ +.+ ....++ .++ .|++|.+|++... .....+..|++.+|..+.
T Consensus       249 ~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i-~vd~~~-~t~-~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~  325 (455)
T 2yqu_A          249 EVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRI-PVDEHL-RTR-VPHIYAIGDVVRGPMLAHKASEEGIAAVEHMV  325 (455)
T ss_dssp             CEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCC-CCCTTS-BCS-STTEEECGGGSSSCCCHHHHHHHHHHHHHHHH
T ss_pred             eEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcE-eECCCc-ccC-CCCEEEEecCCCCccCHHHHHHhHHHHHHHHc
Confidence            8899999999999999987742 112333332 222 222222 234 6999999998753 345678999999999998


Q ss_pred             CC
Q 037525          144 GQ  145 (182)
Q Consensus       144 g~  145 (182)
                      |.
T Consensus       326 ~~  327 (455)
T 2yqu_A          326 RG  327 (455)
T ss_dssp             HS
T ss_pred             CC
Confidence            75

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.37  E-value=5.5e-12  Score=106.63  Aligned_cols=139  Identities=9%  Similarity=0.090  Sum_probs=97.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC--CCC---------CCCCC-CeEEcceeEEee-CCCe--EEEcC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT--YEK---------QPGFD-NMWLHSMIESAH-DNGA--VVFRN   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~--~~~---------~~~~~-~i~~~~~v~~~~-~~~~--v~~~d   65 (182)
                      +|+|||+|++|+|+|..+++.+.+|+++.|.+.+..  ++.         +...+ ++..+..|+++. ++++  +.+.+
T Consensus       149 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~  228 (452)
T 3oc4_A          149 TVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSE  228 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECC
Confidence            489999999999999999999999999999875421  110         00111 234456788886 2233  55656


Q ss_pred             CcEEecCEEEEecccccCCCCCCCCCceecCCC-ccccccccccCCCCCCCEEEEeccCCc-----------ccccHHHH
Q 037525           66 GHTVHADVILHCTGYKYHFPFLETNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKV-----------IPFPLCEY  133 (182)
Q Consensus        66 g~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~e~  133 (182)
                      | ++++|.||+|||++|+.+++...  +.++.. .+ ....++- .+ .|++|.+|++...           .....+..
T Consensus       229 g-~i~aD~Vv~A~G~~p~~~~l~~~--~~~~~~g~i-~vd~~~~-t~-~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~  302 (452)
T 3oc4_A          229 Q-EISCDSGIFALNLHPQLAYLDKK--IQRNLDQTI-AVDAYLQ-TS-VPNVFAIGDCISVMNEPVAETFYAPLVNNAVR  302 (452)
T ss_dssp             C-EEEESEEEECSCCBCCCSSCCTT--SCBCTTSCB-CCCTTCB-CS-STTEEECGGGBCEEEGGGTEEECCCCHHHHHH
T ss_pred             C-EEEeCEEEECcCCCCChHHHHhh--hccCCCCCE-EECcCcc-CC-CCCEEEEEeeEEeccccCCceeecchHHHHHH
Confidence            6 88999999999999998887642  343322 22 2222222 24 6999999998642           24567899


Q ss_pred             HHHHHHHHHcCC
Q 037525          134 QSKWIAGVLSGQ  145 (182)
Q Consensus       134 qa~~ia~~l~g~  145 (182)
                      |++.++..+.|.
T Consensus       303 ~g~~aa~~i~g~  314 (452)
T 3oc4_A          303 TGLVVANNLEEK  314 (452)
T ss_dssp             HHHHHTTSSSSC
T ss_pred             HHHHHHHHhcCC
Confidence            999999999875

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.37  E-value=5.4e-12  Score=107.09  Aligned_cols=140  Identities=9%  Similarity=0.092  Sum_probs=97.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCC----------CCCeEEcceeEEeeCC--Ce--EEEc--
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPG----------FDNMWLHSMIESAHDN--GA--VVFR--   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~----------~~~i~~~~~v~~~~~~--~~--v~~~--   64 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|.+.+.. ..+..          .-++..+..|+++.++  ++  +.+.  
T Consensus       174 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~d~~~~~~l~~~l~v~i~~~~~v~~i~~~~~~~v~v~~~~~  252 (466)
T 3l8k_A          174 DMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALI-TLEDQDIVNTLLSILKLNIKFNSPVTEVKKIKDDEYEVIYSTK  252 (466)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-TSCCHHHHHHHHHHHCCCEECSCCEEEEEEEETTEEEEEECCT
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCC-CCCCHHHHHHHHhcCEEEEEECCEEEEEEEcCCCcEEEEEEec
Confidence            489999999999999999999999999999765421 10010          0134445667777542  23  5666  


Q ss_pred             CCc--EEecCEEEEecccccCCCC-CCCCCceecCCCccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHH
Q 037525           65 NGH--TVHADVILHCTGYKYHFPF-LETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAG  140 (182)
Q Consensus        65 dg~--~~~~D~vi~atG~~~~~~~-l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~  140 (182)
                      ||+  ++++|.||+|+|++|+.++ +.. .++.+++..+ .....+- .+ .|++|.+|++... .....+..|++.+|.
T Consensus       253 ~G~~~~i~~D~vi~a~G~~p~~~l~l~~-~gl~~~~~Gi-~vd~~~~-t~-~~~Iya~GD~~~~~~~~~~A~~~g~~aa~  328 (466)
T 3l8k_A          253 DGSKKSIFTNSVVLAAGRRPVIPEGARE-IGLSISKTGI-VVDETMK-TN-IPNVFATGDANGLAPYYHAAVRMSIAAAN  328 (466)
T ss_dssp             TSCCEEEEESCEEECCCEEECCCTTTGG-GTCCBCSSSB-CCCTTCB-CS-STTEEECGGGTCSCCSHHHHHHHHHHHHH
T ss_pred             CCceEEEEcCEEEECcCCCcccccchhh-cCceeCCCCE-eECCCcc-CC-CCCEEEEEecCCCCccHhHHHHHHHHHHH
Confidence            676  6899999999999999883 332 2344443323 3322222 24 6999999998753 456789999999999


Q ss_pred             HHcCC
Q 037525          141 VLSGQ  145 (182)
Q Consensus       141 ~l~g~  145 (182)
                      .+.|.
T Consensus       329 ~i~~~  333 (466)
T 3l8k_A          329 NIMAN  333 (466)
T ss_dssp             HHHTT
T ss_pred             HHhCC
Confidence            99875

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.37  E-value=5.5e-12  Score=107.16  Aligned_cols=141  Identities=14%  Similarity=0.145  Sum_probs=96.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCC-----------CC--CeEEcceeEEeeCCC-e-EEE--
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPG-----------FD--NMWLHSMIESAHDNG-A-VVF--   63 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~-----------~~--~i~~~~~v~~~~~~~-~-v~~--   63 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++++.+. ...++.           ..  ++..+..|+++..++ + +.+  
T Consensus       180 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~  258 (474)
T 1zmd_A          180 KMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVG-GVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSI  258 (474)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-CSSCCHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccC-CcccCHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEE
Confidence            58999999999999999999999999999886542 101110           01  234456777776422 2 433  


Q ss_pred             -----cCCcEEecCEEEEecccccCCCCCC-CCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHH
Q 037525           64 -----RNGHTVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQS  135 (182)
Q Consensus        64 -----~dg~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa  135 (182)
                           .+++++++|.||+|+|++|+.+++. ...++++++ +.+ ....++- ++ .|++|.+|++... ...+.+..|+
T Consensus       259 ~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i-~vd~~~~-t~-~~~IyA~GD~~~~~~~~~~A~~~g  335 (474)
T 1zmd_A          259 EAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRI-PVNTRFQ-TK-IPNIYAIGDVVAGPMLAHKAEDEG  335 (474)
T ss_dssp             EETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCC-CCCTTCB-CS-STTEEECGGGSSSCCCHHHHHHHH
T ss_pred             EecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCE-EECcCCc-cC-CCCEEEeeecCCCCccHHHHHHHH
Confidence                 2556789999999999999988753 112233332 223 2222222 34 6999999998753 3457889999


Q ss_pred             HHHHHHHcCC
Q 037525          136 KWIAGVLSGQ  145 (182)
Q Consensus       136 ~~ia~~l~g~  145 (182)
                      +.+|..+.|.
T Consensus       336 ~~aa~~i~~~  345 (474)
T 1zmd_A          336 IICVEGMAGG  345 (474)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHhcCC
Confidence            9999999986

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.37  E-value=3.5e-12  Score=102.14  Aligned_cols=138  Identities=14%  Similarity=0.135  Sum_probs=90.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC----CC---CCCCeE--EcceeEEeeCCC----eEEEcC--
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK----QP---GFDNMW--LHSMIESAHDNG----AVVFRN--   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~----~~---~~~~i~--~~~~v~~~~~~~----~v~~~d--   65 (182)
                      +|+|||+|++|+|+|..|++.+++|++++|++.+.....    +.   ...++.  .+..|+++..++    +|++.+  
T Consensus       147 ~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~  226 (320)
T 1trb_A          147 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQ  226 (320)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccccCHHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEecc
Confidence            489999999999999999999999999999875431100    00   012343  356777776432    277765  


Q ss_pred             --C--cEEecCEEEEecccccCCCCCCCCCceecCCCccccccccc----cCCCCCCCEEEEeccCCcc--cccHHHHHH
Q 037525           66 --G--HTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHV----FPPVLAPWLSFVGLPWKVI--PFPLCEYQS  135 (182)
Q Consensus        66 --g--~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~----~~~~~~p~l~~iG~~~~~~--~~~~~e~qa  135 (182)
                        |  +++++|.||+|+|++++.+++...  +..+++.+ .....+    ..++ .|++|.+|++....  ....+..|+
T Consensus       227 ~~g~~~~i~~D~vv~a~G~~p~~~~~~~~--l~~~~G~i-~vd~~~~~~~~~t~-~~~vya~GD~~~~~~~~~~~A~~~g  302 (320)
T 1trb_A          227 NSDNIESLDVAGLFVAIGHSPNTAIFEGQ--LELENGYI-KVQSGIHGNATQTS-IPGVFAAGDVMDHIYRQAITSAGTG  302 (320)
T ss_dssp             TCCCCEEEECSEEEECSCEEESCGGGTTT--SCEETTEE-CCCCSSSSCTTBCS-STTEEECGGGGCSSSCCHHHHHHHH
T ss_pred             CCCceEEEEcCEEEEEeCCCCChHHhccc--ccccCceE-EECCCcccccccCC-CCCEEEcccccCCcchhhhhhhccH
Confidence              5  467999999999999998887632  33332322 222221    2344 69999999986432  334455565


Q ss_pred             HHHHHHH
Q 037525          136 KWIAGVL  142 (182)
Q Consensus       136 ~~ia~~l  142 (182)
                      +.+|..+
T Consensus       303 ~~aa~~i  309 (320)
T 1trb_A          303 CMAALDA  309 (320)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555544

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.36  E-value=3.8e-12  Score=108.63  Aligned_cols=143  Identities=20%  Similarity=0.188  Sum_probs=96.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeCC-C--eEEEcC-
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHDN-G--AVVFRN-   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~~-~--~v~~~d-   65 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++++.+.. ++.         +... -++.....|+++..+ +  .+.+.+ 
T Consensus       200 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~  279 (491)
T 3urh_A          200 SMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPV  279 (491)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEET
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEec
Confidence            489999999999999999999999999998765421 000         0000 023344567777532 2  355653 


Q ss_pred             --C--cEEecCEEEEecccccCCCCCCC-CCceecCC-CccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHH
Q 037525           66 --G--HTVHADVILHCTGYKYHFPFLET-NGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWI  138 (182)
Q Consensus        66 --g--~~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~i  138 (182)
                        |  +++++|.||+|||++|+.+++.. ..++.+++ +.+ .....+- .+ .|++|.+|++.. ......+..|++.+
T Consensus       280 ~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i-~vd~~~~-t~-~~~IyA~GD~~~~~~~~~~A~~~g~~a  356 (491)
T 3urh_A          280 KGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRV-EIDRHFQ-TS-IAGVYAIGDVVRGPMLAHKAEDEGVAV  356 (491)
T ss_dssp             TSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCB-CCCTTCB-CS-STTEEECGGGSSSCCCHHHHHHHHHHH
T ss_pred             CCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCE-eECCCCC-CC-CCCEEEEEecCCCccchhHHHHHHHHH
Confidence              5  46899999999999999887531 11233332 222 2222222 24 699999999874 34567889999999


Q ss_pred             HHHHcCCC
Q 037525          139 AGVLSGQI  146 (182)
Q Consensus       139 a~~l~g~~  146 (182)
                      |..+.|+.
T Consensus       357 a~~i~g~~  364 (491)
T 3urh_A          357 AEIIAGQA  364 (491)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHcCCC
Confidence            99999863

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.36  E-value=1.8e-12  Score=103.48  Aligned_cols=139  Identities=17%  Similarity=0.157  Sum_probs=93.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCC----CCCCCCCCeE--EcceeEEeeCCC---eEEEcC---Cc-
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTY----EKQPGFDNMW--LHSMIESAHDNG---AVVFRN---GH-   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~----~~~~~~~~i~--~~~~v~~~~~~~---~v~~~d---g~-   67 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|++.+...    +.+....++.  ....|+++.+++   +|++.|   |+ 
T Consensus       156 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~  235 (323)
T 3f8d_A          156 VVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEI  235 (323)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCE
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCcCHHHHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCce
Confidence            4899999999999999999999999999998754321    0111112344  345677776543   477776   76 


Q ss_pred             -EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc----ccccHHHHHHHHHHHH
Q 037525           68 -TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV----IPFPLCEYQSKWIAGV  141 (182)
Q Consensus        68 -~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~----~~~~~~e~qa~~ia~~  141 (182)
                       .+++|.||+|+|+.++.+++... .+..++ +.+ ..... +..+ .|++|.+|++...    .....+..|++.+|..
T Consensus       236 ~~~~~D~vv~a~G~~p~~~~~~~~-g~~~~~~g~i-~vd~~-~~t~-~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~  311 (323)
T 3f8d_A          236 KELNVNGVFIEIGFDPPTDFAKSN-GIETDTNGYI-KVDEW-MRTS-VPGVFAAGDCTSAWLGFRQVITAVAQGAVAATS  311 (323)
T ss_dssp             EEEECSEEEECCCEECCHHHHHHT-TCCBCTTSSB-CCCTT-CBCS-STTEEECSTTBSTTTTCCCHHHHHHHHHHHHHH
T ss_pred             EEEEcCEEEEEECCCCChhHHhhc-CeeecCCCcE-ecCCC-ceec-CCCEEEcceecCCCCcccceeehhhHHHHHHHH
Confidence             57999999999999987776542 233322 222 22222 1234 6999999998752    3455667777777665


Q ss_pred             Hc
Q 037525          142 LS  143 (182)
Q Consensus       142 l~  143 (182)
                      +.
T Consensus       312 i~  313 (323)
T 3f8d_A          312 AY  313 (323)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.36  E-value=4.6e-12  Score=108.03  Aligned_cols=142  Identities=15%  Similarity=0.142  Sum_probs=97.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeCCC---eEEEcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHDNG---AVVFRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~~~---~v~~~dg   66 (182)
                      +|+|||+|++|+|+|..+++.+.+|+++.+++.+.. ++.         +... -++..+..|+++..++   .+++.||
T Consensus       193 ~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g  272 (484)
T 3o0h_A          193 SIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNG  272 (484)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCC
Confidence            489999999999999999999999999998765321 100         0000 1233446777776432   4778899


Q ss_pred             cEEecCEEEEecccccCCCCCCC-CCceecCCC-ccccccccccCCCCCCCEEEEeccCC-cccccHHHHHHHHHHHHHc
Q 037525           67 HTVHADVILHCTGYKYHFPFLET-NGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus        67 ~~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~ia~~l~  143 (182)
                      +++++|.||+|+|++++..++.- ..++++++. .+ .....+ .++ .|++|.+|++.. ....+.+..|++.++..+.
T Consensus       273 ~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i-~vd~~~-~t~-~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~  349 (484)
T 3o0h_A          273 QTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAV-VVDEKM-TTN-VSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAF  349 (484)
T ss_dssp             CEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCB-CCCTTS-BCS-STTEEECGGGGTSCCCHHHHHHHHHHHHHHHH
T ss_pred             cEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCE-eECCCC-CCC-CCCEEEEEecCCCCcCHHHHHHHHHHHHHHHc
Confidence            88999999999999999887531 122333332 22 222222 234 699999999875 3345688999999999998


Q ss_pred             CC
Q 037525          144 GQ  145 (182)
Q Consensus       144 g~  145 (182)
                      |.
T Consensus       350 ~~  351 (484)
T 3o0h_A          350 EN  351 (484)
T ss_dssp             C-
T ss_pred             CC
Confidence            75

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.36  E-value=3e-12  Score=105.98  Aligned_cols=140  Identities=11%  Similarity=0.142  Sum_probs=97.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCC--CC---------CCCC-CCeEEcceeEEeeCC-C--eEEEcC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTY--EK---------QPGF-DNMWLHSMIESAHDN-G--AVVFRN   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~--~~---------~~~~-~~i~~~~~v~~~~~~-~--~v~~~d   65 (182)
                      +|+|||+|.+|+|+|..|++.+.+|+++++.+.....  ..         +... -++.....|+++..+ +  .+++.|
T Consensus       147 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~  226 (384)
T 2v3a_A          147 RVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSD  226 (384)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETT
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECC
Confidence            4899999999999999999999999999987653210  00         0011 134445677777532 2  467789


Q ss_pred             CcEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCC--c---ccccHHHHHHHHHHH
Q 037525           66 GHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK--V---IPFPLCEYQSKWIAG  140 (182)
Q Consensus        66 g~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~--~---~~~~~~e~qa~~ia~  140 (182)
                      |+++++|.||+|+|+.++.+++.. .+++.+++ + ....++ .++ .|++|.+|++..  +   ..+..+..|++.+|.
T Consensus       227 g~~i~~d~vv~a~G~~p~~~l~~~-~g~~~~~g-i-~vd~~~-~t~-~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~  301 (384)
T 2v3a_A          227 GEVIPCDLVVSAVGLRPRTELAFA-AGLAVNRG-I-VVDRSL-RTS-HANIYALGDCAEVDGLNLLYVMPLMACARALAQ  301 (384)
T ss_dssp             SCEEEESEEEECSCEEECCHHHHH-TTCCBSSS-E-EECTTC-BCS-STTEEECGGGEEETTBCCCSHHHHHHHHHHHHH
T ss_pred             CCEEECCEEEECcCCCcCHHHHHH-CCCCCCCC-E-EECCCC-CCC-CCCEEEeeeeeeECCCCcchHHHHHHHHHHHHH
Confidence            988999999999999998776543 23444433 3 222222 234 699999999863  2   124557899999999


Q ss_pred             HHcCC
Q 037525          141 VLSGQ  145 (182)
Q Consensus       141 ~l~g~  145 (182)
                      .+.|.
T Consensus       302 ~i~g~  306 (384)
T 2v3a_A          302 TLAGN  306 (384)
T ss_dssp             HHTTC
T ss_pred             HhcCC
Confidence            99886

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.36  E-value=6.4e-12  Score=107.07  Aligned_cols=141  Identities=16%  Similarity=0.162  Sum_probs=96.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeCCCeE--EEcCCc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHDNGAV--VFRNGH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~~~~v--~~~dg~   67 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++++.... ++.         +... -++.....|+++.+++.+  +..++.
T Consensus       188 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~  267 (480)
T 3cgb_A          188 DVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKG  267 (480)
T ss_dssp             EEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEETTE
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECCC
Confidence            589999999999999999999999999998764321 100         0000 123345677777654333  233556


Q ss_pred             EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-----------ccccHHHHHH
Q 037525           68 TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-----------IPFPLCEYQS  135 (182)
Q Consensus        68 ~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~e~qa  135 (182)
                      ++++|.||+|+|+.++.+++... +++++. +.+ ....++- .+ .|++|.+|++...           ..+..+..|+
T Consensus       268 ~i~~D~vi~a~G~~p~~~~l~~~-g~~~~~~G~I-~Vd~~~~-ts-~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg  343 (480)
T 3cgb_A          268 TYKADLVLVSVGVKPNTDFLEGT-NIRTNHKGAI-EVNAYMQ-TN-VQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQG  343 (480)
T ss_dssp             EEECSEEEECSCEEESCGGGTTS-CCCBCTTSCB-CCCTTSB-CS-STTEEECGGGBCEEBTTTCSEECCCCHHHHHHHH
T ss_pred             EEEcCEEEECcCCCcChHHHHhC-CcccCCCCCE-EECCCcc-CC-CCCEEEeeeEEEecCCCCCcceecchHHHHHHHH
Confidence            78999999999999998877653 344432 222 2222222 24 6999999998621           2357899999


Q ss_pred             HHHHHHHcCC
Q 037525          136 KWIAGVLSGQ  145 (182)
Q Consensus       136 ~~ia~~l~g~  145 (182)
                      +.+|..+.|.
T Consensus       344 ~~aa~~i~g~  353 (480)
T 3cgb_A          344 RLAGLNMLDK  353 (480)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHhcCC
Confidence            9999999875

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.36  E-value=6.7e-12  Score=106.54  Aligned_cols=143  Identities=13%  Similarity=0.082  Sum_probs=97.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeCC-C--eEEEc-C
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHDN-G--AVVFR-N   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~~-~--~v~~~-d   65 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++.+.... .+.         +... -++.....|+++..+ +  .+.+. +
T Consensus       171 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~  250 (464)
T 2eq6_A          171 RLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPA  250 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEET
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeec
Confidence            589999999999999999999999999998764321 000         0000 123345677777642 2  35665 6


Q ss_pred             --Cc--EEecCEEEEecccccCCCCCC-CCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHH
Q 037525           66 --GH--TVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWI  138 (182)
Q Consensus        66 --g~--~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~i  138 (182)
                        |+  ++++|.||+|+|++|+.+++. ...++..++ +.+ ....++ .++ .|++|.+|++... ...+.+..|++.+
T Consensus       251 ~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i-~vd~~~-~t~-~~~Iya~GD~~~~~~l~~~A~~~g~~a  327 (464)
T 2eq6_A          251 EGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFI-RVNARM-ETS-VPGVYAIGDAARPPLLAHKAMREGLIA  327 (464)
T ss_dssp             TCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCB-CCCTTC-BCS-STTEEECGGGTCSSCCHHHHHHHHHHH
T ss_pred             CCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCE-EECCCc-ccC-CCCEEEEeccCCCcccHHHHHHHHHHH
Confidence              77  789999999999999988752 111233322 222 222222 234 6999999998743 3456889999999


Q ss_pred             HHHHcCCC
Q 037525          139 AGVLSGQI  146 (182)
Q Consensus       139 a~~l~g~~  146 (182)
                      |..+.|..
T Consensus       328 a~~i~g~~  335 (464)
T 2eq6_A          328 AENAAGKD  335 (464)
T ss_dssp             HHHHTTCC
T ss_pred             HHHhcCCC
Confidence            99998753

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.35  E-value=8.8e-12  Score=106.63  Aligned_cols=142  Identities=13%  Similarity=0.095  Sum_probs=95.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCCCCeEEcceeEEeeCC-Ce--EEEc--C
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGFDNMWLHSMIESAHDN-GA--VVFR--N   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~~~i~~~~~v~~~~~~-~~--v~~~--d   65 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|++.+.. ++         .+...-++.....|+++..+ ++  +.+.  |
T Consensus       176 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~V~i~~~~~v~~i~~~~~~v~v~~~~~~  255 (492)
T 3ic9_A          176 SVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEEFYFDAKARVISTIEKEDAVEVIYFDKS  255 (492)
T ss_dssp             EEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTTSEEETTCEEEEEEECSSSEEEEEECTT
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHHHhhCcEEEECCEEEEEEEcCCEEEEEEEeCC
Confidence            589999999999999999999999999999875421 10         01111123334667777532 23  4554  6


Q ss_pred             C--cEEecCEEEEecccccCCCCCCC-CCceecCCCcccccc-ccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHH
Q 037525           66 G--HTVHADVILHCTGYKYHFPFLET-NGIVTMDDNRVGPLY-KHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAG  140 (182)
Q Consensus        66 g--~~~~~D~vi~atG~~~~~~~l~~-~~~~~~~~~~~~~ly-~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~  140 (182)
                      |  +++++|.||+|+|++|+.+++.- ..+++.++....... .++ ..+ .|++|.+|++... ...+.+..|++.+|.
T Consensus       256 G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~-~t~-~~~IyA~GD~~~~~~~~~~A~~~g~~aa~  333 (492)
T 3ic9_A          256 GQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTL-QTS-VDHIFVAGDANNTLTLLHEAADDGKVAGT  333 (492)
T ss_dssp             CCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTC-BCS-STTEEECGGGGTSSCSHHHHHHHHHHHHH
T ss_pred             CceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccc-cCC-CCCEEEEEecCCCCccHHHHHHHHHHHHH
Confidence            7  56899999999999999888531 123444432211222 122 224 6999999998753 345688999999999


Q ss_pred             HHcC
Q 037525          141 VLSG  144 (182)
Q Consensus       141 ~l~g  144 (182)
                      .+.+
T Consensus       334 ~i~~  337 (492)
T 3ic9_A          334 NAGA  337 (492)
T ss_dssp             HHHH
T ss_pred             HHcC
Confidence            9876

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.35  E-value=9.5e-13  Score=109.52  Aligned_cols=136  Identities=7%  Similarity=0.065  Sum_probs=90.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCCCCCeEEcceeEEeeCCCeEEEcC-------CcEEecCE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRN-------GHTVHADV   73 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~~~~i~~~~~v~~~~~~~~v~~~d-------g~~~~~D~   73 (182)
                      +|+|||+|.+|+|+|..|++.+.+|+++++.+.+. ...++.  .+  ...+.+..++.+|.+..       |+++++|.
T Consensus       148 ~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l-~~~~~~--~~--~~~~~~~l~~~gV~~~~~~~v~~ig~~~~~D~  222 (385)
T 3klj_A          148 KAFIIGGGILGIELAQAIIDSGTPASIGIILEYPL-ERQLDR--DG--GLFLKDKLDRLGIKIYTNSNFEEMGDLIRSSC  222 (385)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC-TTTSCH--HH--HHHHHHHHHTTTCEEECSCCGGGCHHHHHHSE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc-hhhcCH--HH--HHHHHHHHHhCCCEEEeCCEEEEcCeEEecCe
Confidence            68999999999999999999999999999987542 111110  00  00000000011222221       55678999


Q ss_pred             EEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCC-----cccccHHHHHHHHHHHHHcCCC
Q 037525           74 ILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK-----VIPFPLCEYQSKWIAGVLSGQI  146 (182)
Q Consensus        74 vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~-----~~~~~~~e~qa~~ia~~l~g~~  146 (182)
                      ||+|||++|+.+++... ++..+++ + ....++. .+ .|++|.+|++..     ...+..+..|++.+|+.+.|+.
T Consensus       223 vv~a~G~~p~~~~~~~~-gl~~~~g-i-~vd~~~~-t~-~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~  295 (385)
T 3klj_A          223 VITAVGVKPNLDFIKDT-EIASKRG-I-LVNDHME-TS-IKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGED  295 (385)
T ss_dssp             EEECCCEEECCGGGTTS-CCCBSSS-E-EECTTCB-CS-STTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             EEECcCcccChhhhhhc-CCCcCCC-E-EECCCcc-cC-CCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcCCC
Confidence            99999999998887653 4444433 3 2222222 24 699999999863     2356789999999999999863

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.35  E-value=8.3e-12  Score=105.87  Aligned_cols=142  Identities=16%  Similarity=0.170  Sum_probs=95.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CC-CCCC-CeEEcceeEEeeCCC---eEEEc-
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQ-PGFD-NMWLHSMIESAHDNG---AVVFR-   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~-~~~~-~i~~~~~v~~~~~~~---~v~~~-   64 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|++.+.. ++         .+ ...+ ++.....|+++.+++   .+.+. 
T Consensus       176 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~  255 (468)
T 2qae_A          176 TMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEG  255 (468)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEc
Confidence            589999999999999999999999999999865421 10         01 1111 233446777776432   34555 


Q ss_pred             -CC--cEEecCEEEEecccccCCCCCC-CCCceecCC-CccccccccccCCCCCCCEEEEeccCC-c-ccccHHHHHHHH
Q 037525           65 -NG--HTVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK-V-IPFPLCEYQSKW  137 (182)
Q Consensus        65 -dg--~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~-~-~~~~~~e~qa~~  137 (182)
                       ||  +++++|.||+|+|++|+.+++. ...++.+++ +.+ ....++- .+ .|++|.+|++.. . ...+.+..|++.
T Consensus       256 ~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i-~vd~~~~-t~-~~~IyA~GD~~~~~~~~~~~A~~~g~~  332 (468)
T 2qae_A          256 KNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFV-KIGDHFE-TS-IPDVYAIGDVVDKGPMLAHKAEDEGVA  332 (468)
T ss_dssp             C---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCB-CCCTTSB-CS-STTEEECGGGBSSSCSCHHHHHHHHHH
T ss_pred             CCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCE-eECCCcc-cC-CCCEEEeeccCCCCCccHhHHHHHHHH
Confidence             67  5689999999999999988753 112233332 223 2222222 24 699999999875 3 345788999999


Q ss_pred             HHHHHcCC
Q 037525          138 IAGVLSGQ  145 (182)
Q Consensus       138 ia~~l~g~  145 (182)
                      +|..+.|+
T Consensus       333 aa~~i~~~  340 (468)
T 2qae_A          333 CAEILAGK  340 (468)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHcCC
Confidence            99999885

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.34  E-value=8.6e-12  Score=106.07  Aligned_cols=141  Identities=15%  Similarity=0.114  Sum_probs=95.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCCC---------CCCCCCe--EEcceeEEeeC--CC---eEEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYEK---------QPGFDNM--WLHSMIESAHD--NG---AVVF   63 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~~---------~~~~~~i--~~~~~v~~~~~--~~---~v~~   63 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|.+.+. .++.         +.. ..|  .....|+++..  ++   .+.+
T Consensus       189 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~  267 (478)
T 3dk9_A          189 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELEN-AGVEVLKFSQVKEVKKTLSGLEVSMVT  267 (478)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHH-TTCEEETTEEEEEEEECSSSEEEEEEE
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHHHH-CCCEEEeCCEEEEEEEcCCCcEEEEEE
Confidence            58999999999999999999999999999876532 1100         000 123  33456777753  22   2556


Q ss_pred             cC---C----cEEecCEEEEecccccCCCCCC-CCCceecCCC-ccccccccccCCCCCCCEEEEeccCC-cccccHHHH
Q 037525           64 RN---G----HTVHADVILHCTGYKYHFPFLE-TNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWK-VIPFPLCEY  133 (182)
Q Consensus        64 ~d---g----~~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~-~~~~~~~e~  133 (182)
                      .|   |    +.+++|.||+|+|++|+.+++. ...++++++. .+ ....++ .++ .|++|.+|++.. ....+.+..
T Consensus       268 ~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i-~vd~~~-~t~-~~~IyA~GD~~~~~~~~~~A~~  344 (478)
T 3dk9_A          268 AVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHI-IVDEFQ-NTN-VKGIYAVGDVCGKALLTPVAIA  344 (478)
T ss_dssp             CCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCB-CCCTTC-BCS-STTEEECGGGGCSSCCHHHHHH
T ss_pred             ccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCE-eeCCCc-ccC-CCCEEEEEecCCCCccHhHHHH
Confidence            54   2    5679999999999999988652 2223444322 22 222222 234 699999999873 344678899


Q ss_pred             HHHHHHHHHcCC
Q 037525          134 QSKWIAGVLSGQ  145 (182)
Q Consensus       134 qa~~ia~~l~g~  145 (182)
                      |++.+|..+.|.
T Consensus       345 ~g~~aa~~i~~~  356 (478)
T 3dk9_A          345 AGRKLAHRLFEY  356 (478)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCC
Confidence            999999999875

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.33  E-value=8.8e-12  Score=106.19  Aligned_cols=142  Identities=18%  Similarity=0.182  Sum_probs=97.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC---------CCCC-CCeEEcceeEEeeC--CC--eEEEcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---------QPGF-DNMWLHSMIESAHD--NG--AVVFRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~---------~~~~-~~i~~~~~v~~~~~--~~--~v~~~dg   66 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++.|......++.         +... -++.....|+++..  ++  .+++.++
T Consensus       189 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~  268 (483)
T 3dgh_A          189 KTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNV  268 (483)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTTSCHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEET
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecC
Confidence            489999999999999999999999999998542221110         0000 13455667777763  22  3677665


Q ss_pred             c-----EEecCEEEEecccccCCCCCC-CCCceecCCCccccccccccCCCCCCCEEEEeccCC--cccccHHHHHHHHH
Q 037525           67 H-----TVHADVILHCTGYKYHFPFLE-TNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK--VIPFPLCEYQSKWI  138 (182)
Q Consensus        67 ~-----~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~i  138 (182)
                      +     ++++|.||+|+|++|+.+++. ...++..+++.+ ....++ .++ .|++|.+|++..  ....+.+..|++.+
T Consensus       269 ~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i-~vd~~~-~t~-~~~IyA~GD~~~~~~~~~~~A~~~g~~a  345 (483)
T 3dgh_A          269 ETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKI-PVDSQE-ATN-VANIYAVGDIIYGKPELTPVAVLAGRLL  345 (483)
T ss_dssp             TTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBB-CCCTTC-BCS-STTEEECSTTBTTSCCCHHHHHHHHHHH
T ss_pred             CCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEE-EECcCC-ccC-CCCEEEEEcccCCCCccHHHHHHHHHHH
Confidence            4     679999999999999988763 112344444333 222222 234 699999999852  33467889999999


Q ss_pred             HHHHcCC
Q 037525          139 AGVLSGQ  145 (182)
Q Consensus       139 a~~l~g~  145 (182)
                      |..+.|.
T Consensus       346 a~~i~g~  352 (483)
T 3dgh_A          346 ARRLYGG  352 (483)
T ss_dssp             HHHHHSC
T ss_pred             HHHHcCC
Confidence            9999875

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.32  E-value=5e-12  Score=108.89  Aligned_cols=141  Identities=13%  Similarity=0.130  Sum_probs=97.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeC--CC-----eEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHD--NG-----AVV   62 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~--~~-----~v~   62 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++.+.... ++.         +... -++..+..|+++..  ++     .|.
T Consensus       216 ~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~  295 (523)
T 1mo9_A          216 TVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAM  295 (523)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEE
Confidence            489999999999999999999999999998764321 000         0001 12344567777764  32     256


Q ss_pred             EcCCc-EEecCEEEEecccccCCC-CCCCCCceecC-CCccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHH
Q 037525           63 FRNGH-TVHADVILHCTGYKYHFP-FLETNGIVTMD-DNRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWI  138 (182)
Q Consensus        63 ~~dg~-~~~~D~vi~atG~~~~~~-~l~~~~~~~~~-~~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~i  138 (182)
                      +.||+ ++++|.||+|||++|+.+ ++.. .+++++ .+.+ ....++- .+ .|++|.+|++... ...+.+..|++.+
T Consensus       296 ~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~-~gl~~~~~G~i-~Vd~~~~-t~-~~~IyA~GD~~~~~~~~~~A~~~g~~a  371 (523)
T 1mo9_A          296 TPNGEMRIETDFVFLGLGEQPRSAELAKI-LGLDLGPKGEV-LVNEYLQ-TS-VPNVYAVGDLIGGPMEMFKARKSGCYA  371 (523)
T ss_dssp             ETTEEEEEECSCEEECCCCEECCHHHHHH-HTCCBCTTSCB-CCCTTSB-CS-STTEEECGGGGCSSCSHHHHHHHHHHH
T ss_pred             ECCCcEEEEcCEEEECcCCccCCccCHHH-cCCccCCCCCE-EECCCCc-cC-CCCEEEEeecCCCcccHHHHHHHHHHH
Confidence            67887 789999999999999976 5543 223333 2222 2222221 24 6999999998753 4567899999999


Q ss_pred             HHHHcCC
Q 037525          139 AGVLSGQ  145 (182)
Q Consensus       139 a~~l~g~  145 (182)
                      |..+.|.
T Consensus       372 a~~i~g~  378 (523)
T 1mo9_A          372 ARNVMGE  378 (523)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            9999985

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.32  E-value=8.1e-12  Score=99.46  Aligned_cols=140  Identities=13%  Similarity=0.117  Sum_probs=93.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCCeE--EcceeEEeeCCC----eEEEc--CCc-
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDNMW--LHSMIESAHDNG----AVVFR--NGH-   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~i~--~~~~v~~~~~~~----~v~~~--dg~-   67 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|++.+....    .+....++.  .+..+.++..++    ++++.  +|+ 
T Consensus       149 ~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~  228 (315)
T 3r9u_A          149 EVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSI  228 (315)
T ss_dssp             EEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBSCHHHHHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCE
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCCHHHHHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCe
Confidence            48999999999999999999999999999987653110    000112333  456777776432    36776  786 


Q ss_pred             -EEecCEEEEecccccCCCCCCCC--Cc-eecCC-CccccccccccCCCCCCCEEEEeccCC--cccccHHHHHHHHHHH
Q 037525           68 -TVHADVILHCTGYKYHFPFLETN--GI-VTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWK--VIPFPLCEYQSKWIAG  140 (182)
Q Consensus        68 -~~~~D~vi~atG~~~~~~~l~~~--~~-~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~ia~  140 (182)
                       ++++|.||+|+|++|+.+++...  .+ +..++ +.+ ..... +..+ .|++|.+|++..  ......+..|++.+|.
T Consensus       229 ~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i-~vd~~-~~t~-~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~  305 (315)
T 3r9u_A          229 RDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQV-SVDLK-MQTS-VAGLFAAGDLRKDAPKQVICAAGDGAVAAL  305 (315)
T ss_dssp             EEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCB-CCCTT-CBCS-STTEEECGGGBTTCCCCHHHHHHHHHHHHH
T ss_pred             EEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcE-EeCCC-cccC-CCCEEEeecccCCchhhhhhHHhhHHHHHH
Confidence             67899999999999998877641  11 34333 223 22222 2234 699999999863  2345667777777776


Q ss_pred             HHc
Q 037525          141 VLS  143 (182)
Q Consensus       141 ~l~  143 (182)
                      .+.
T Consensus       306 ~i~  308 (315)
T 3r9u_A          306 SAM  308 (315)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.32  E-value=5.2e-12  Score=101.32  Aligned_cols=137  Identities=13%  Similarity=0.062  Sum_probs=90.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCCeE--EcceeEEeeCCC---eEEEcC-----C
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDNMW--LHSMIESAHDNG---AVVFRN-----G   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~i~--~~~~v~~~~~~~---~v~~~d-----g   66 (182)
                      +|+|||+|.+|+|+|..|++.+.+|++++|++.+....    .+.. .+|.  .+..+.++.+++   ++++.+     +
T Consensus       156 ~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~  234 (332)
T 3lzw_A          156 RVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVENLHA-SKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRK  234 (332)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSCHHHHHHHHH-SSCEEETTEEEEEEECSSSCCEEEEEETTSCCE
T ss_pred             EEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCccHHHHHHHhc-CCeEEEeCceeeEEecCCceEEEEEEecCCCce
Confidence            48999999999999999999999999999987542111    0100 1333  345777886532   478876     3


Q ss_pred             cEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCC----cccccHHHHHHHHHHHHH
Q 037525           67 HTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK----VIPFPLCEYQSKWIAGVL  142 (182)
Q Consensus        67 ~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~----~~~~~~~e~qa~~ia~~l  142 (182)
                      +++++|.||+|+|+.++.+++... .+..+.+.+ ....+. ..+ .|++|.+|++..    ......+..|++.+|..+
T Consensus       235 ~~~~~D~vv~a~G~~p~~~~~~~~-~~~~~~g~i-~vd~~~-~t~-~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i  310 (332)
T 3lzw_A          235 EILEIDDLIVNYGFVSSLGPIKNW-GLDIEKNSI-VVKSTM-ETN-IEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNA  310 (332)
T ss_dssp             EEEECSEEEECCCEECCCGGGGGS-SCCEETTEE-ECCTTS-BCS-STTEEECGGGEECTTCCCCHHHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEeeccCCCchHHhhc-CccccCCeE-EeCCCC-cee-cCCEEEccceecCCCCcceEeeehhhHHHHHHHH
Confidence            467999999999999998887642 333333333 222222 124 699999999852    223445556666665554

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.30  E-value=2.8e-11  Score=102.07  Aligned_cols=138  Identities=15%  Similarity=0.210  Sum_probs=96.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC--CCC---------CCCCCCe--EEcceeEEeeCCCe---EEEc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT--YEK---------QPGFDNM--WLHSMIESAHDNGA---VVFR   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~--~~~---------~~~~~~i--~~~~~v~~~~~~~~---v~~~   64 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++++....  ++.         +.. ..+  ..+..|+++..++.   +.+ 
T Consensus       151 ~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~-~gv~i~~~~~v~~i~~~~~v~~v~~-  228 (447)
T 1nhp_A          151 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA-NNITIATGETVERYEGDGRVQKVVT-  228 (447)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHT-TTEEEEESCCEEEEECSSBCCEEEE-
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHh-CCCEEEcCCEEEEEEccCcEEEEEE-
Confidence            489999999999999999999999999998764321  110         001 133  34567788865432   444 


Q ss_pred             CCcEEecCEEEEecccccCCCCCCCCCceecCC-Ccc-ccccccccCCCCCCCEEEEeccCCc-----------ccccHH
Q 037525           65 NGHTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRV-GPLYKHVFPPVLAPWLSFVGLPWKV-----------IPFPLC  131 (182)
Q Consensus        65 dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~-~~ly~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~  131 (182)
                      +|+++++|.||+|+|++|+.++++..  +++++ +.+ .+.|..+   + .|++|.+|++...           ...+.+
T Consensus       229 ~~~~i~~d~vi~a~G~~p~~~~~~~~--~~~~~~G~i~Vd~~~~t---~-~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A  302 (447)
T 1nhp_A          229 DKNAYDADLVVVAVGVRPNTAWLKGT--LELHPNGLIKTDEYMRT---S-EPDVFAVGDATLIKYNPADTEVNIALATNA  302 (447)
T ss_dssp             SSCEEECSEEEECSCEEESCGGGTTT--SCBCTTSCBCCCTTCBC---S-STTEEECGGGSCEEEGGGTEEECCCCHHHH
T ss_pred             CCCEEECCEEEECcCCCCChHHHHhh--hhhcCCCcEEECccccC---C-CCCEEEeeeEEEeeccCCCCceechhHHHH
Confidence            67788999999999999998877642  44432 222 1233332   4 6999999998631           235788


Q ss_pred             HHHHHHHHHHHcCCC
Q 037525          132 EYQSKWIAGVLSGQI  146 (182)
Q Consensus       132 e~qa~~ia~~l~g~~  146 (182)
                      ..|++.++..+.|..
T Consensus       303 ~~qg~~aa~~i~g~~  317 (447)
T 1nhp_A          303 RKQGRFAVKNLEEPV  317 (447)
T ss_dssp             HHHHHHHHHTSSSCC
T ss_pred             HHHHHHHHHhhcCCC
Confidence            999999999998853

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.28  E-value=2.8e-11  Score=105.63  Aligned_cols=141  Identities=13%  Similarity=0.184  Sum_probs=91.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC---------CCCCCCeE--EcceeEEee--------C--CC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---------QPGFDNMW--LHSMIESAH--------D--NG   59 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~---------~~~~~~i~--~~~~v~~~~--------~--~~   59 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|+.....++.         +.. ..|.  ....++++.        +  .+
T Consensus       288 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~-~gv~i~~~~~v~~v~~~~~~~~~~~~~~  366 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYMEN-HGVKFAKLCVPDEIKQLKVVDTENNKPG  366 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHHH-TTCEEEETEEEEEEEEEECCBTTTTBCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEECCcCcCcCCHHHHHHHHHHHHh-CCCEEEECCeEEEEEeccccccccCCCc
Confidence            589999999999999999999999999998721111110         000 1233  333344442        1  12


Q ss_pred             eEE----EcCCcEEe--cCEEEEecccccCCCCCC-CCCceecCC-CccccccccccCCCCCCCEEEEeccC-C-ccccc
Q 037525           60 AVV----FRNGHTVH--ADVILHCTGYKYHFPFLE-TNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPW-K-VIPFP  129 (182)
Q Consensus        60 ~v~----~~dg~~~~--~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~-~-~~~~~  129 (182)
                      .+.    +.+|+.++  +|.||+|+|++|+.+++. ...++++++ +.+ ....++ .++ .|++|.+|++. . ....+
T Consensus       367 ~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i-~vd~~~-~ts-~~~VyA~GD~~~~~~~~~~  443 (598)
T 2x8g_A          367 LLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRV-VCTDDE-QTT-VSNVYAIGDINAGKPQLTP  443 (598)
T ss_dssp             EEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCB-CCCTTS-BCS-STTEEECGGGBTTSCCCHH
T ss_pred             eEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcE-EeCCCC-cCC-CCCEEEEeeecCCCCccHH
Confidence            332    35787654  999999999999988753 212344432 223 222222 234 69999999984 2 23567


Q ss_pred             HHHHHHHHHHHHHcCC
Q 037525          130 LCEYQSKWIAGVLSGQ  145 (182)
Q Consensus       130 ~~e~qa~~ia~~l~g~  145 (182)
                      .+..|++.+|..+.|.
T Consensus       444 ~A~~~g~~aa~~i~~~  459 (598)
T 2x8g_A          444 VAIQAGRYLARRLFAG  459 (598)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHhHHHHHHHHhcC
Confidence            8899999999988754

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.27  E-value=3.8e-12  Score=109.35  Aligned_cols=143  Identities=13%  Similarity=0.168  Sum_probs=93.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--------------CeEEEEeccCCCCCCCCCCC-----------CC--CeEEcceeE
Q 037525            1 VIILVGSSASAVDICRDLAGVA--------------KEVHLVSRSVADGTYEKQPG-----------FD--NMWLHSMIE   53 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--------------~~V~l~~r~~~~~~~~~~~~-----------~~--~i~~~~~v~   53 (182)
                      +++|||||++|+|+|.+|++..              .+|+++++.+...  ..++.           ..  ++..+..|+
T Consensus       219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il--~~~~~~~~~~~~~~L~~~GV~v~~~~~v~  296 (502)
T 4g6h_A          219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL--NMFEKKLSSYAQSHLENTSIKVHLRTAVA  296 (502)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS--TTSCHHHHHHHHHHHHHTTCEEETTEEEE
T ss_pred             ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc--cCCCHHHHHHHHHHHHhcceeeecCceEE
Confidence            3899999999999999998743              4799999877542  11110           01  344567888


Q ss_pred             EeeCCCeEEE----cCCc----EEecCEEEEecccccCCCCCCC---CCceecC-CCccccccccccCCCCCCCEEEEec
Q 037525           54 SAHDNGAVVF----RNGH----TVHADVILHCTGYKYHFPFLET---NGIVTMD-DNRVGPLYKHVFPPVLAPWLSFVGL  121 (182)
Q Consensus        54 ~~~~~~~v~~----~dg~----~~~~D~vi~atG~~~~~~~l~~---~~~~~~~-~~~~~~ly~~~~~~~~~p~l~~iG~  121 (182)
                      +++++ ++.+    .||+    ++++|.||||+|.+++ +++..   ......+ .+++ ....++-.++ +||+|.+|+
T Consensus       297 ~v~~~-~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~-~~~~~l~~~~~~~~~~~g~I-~Vd~~lq~~~-~~~IfAiGD  372 (502)
T 4g6h_A          297 KVEEK-QLLAKTKHEDGKITEETIPYGTLIWATGNKAR-PVITDLFKKIPEQNSSKRGL-AVNDFLQVKG-SNNIFAIGD  372 (502)
T ss_dssp             EECSS-EEEEEEECTTSCEEEEEEECSEEEECCCEECC-HHHHHHHHHSGGGTTCCSSE-EBCTTSBBTT-CSSEEECGG
T ss_pred             EEeCC-ceEEEEEecCcccceeeeccCEEEEccCCcCC-HHHHhHHHhccccccCCCce-eECCccccCC-CCCEEEEEc
Confidence            88764 5544    3564    5789999999999887 22211   0111111 1222 2223333345 699999999


Q ss_pred             cCC---cccccHHHHHHHHHHHHHcCCCCCC
Q 037525          122 PWK---VIPFPLCEYQSKWIAGVLSGQIVLP  149 (182)
Q Consensus       122 ~~~---~~~~~~~e~qa~~ia~~l~g~~~lP  149 (182)
                      +..   +.+.+.+..|++++|+.|.+....|
T Consensus       373 ~a~~~~p~~a~~A~qqg~~~A~ni~~~~~~~  403 (502)
T 4g6h_A          373 NAFAGLPPTAQVAHQEAEYLAKNFDKMAQIP  403 (502)
T ss_dssp             GEESSSCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccCCCCCCchHHHHHHHHHHHHHHHHHhccc
Confidence            863   3456789999999999998755543

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.26  E-value=5.8e-11  Score=100.64  Aligned_cols=141  Identities=15%  Similarity=0.109  Sum_probs=94.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC---------CCCC-CCeEEcceeEEeeCC-C--eEEEcCCc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---------QPGF-DNMWLHSMIESAHDN-G--AVVFRNGH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~---------~~~~-~~i~~~~~v~~~~~~-~--~v~~~dg~   67 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++++.+...+.         +... -++..+..|+++..+ +  .+.+. +.
T Consensus       178 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~  256 (467)
T 1zk7_A          178 RLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HG  256 (467)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTSCHHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TE
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCCCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-Cc
Confidence            589999999999999999999999999998765321110         0000 123334577777532 2  24444 55


Q ss_pred             EEecCEEEEecccccCCCCCC-CCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHcC
Q 037525           68 TVHADVILHCTGYKYHFPFLE-TNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLSG  144 (182)
Q Consensus        68 ~~~~D~vi~atG~~~~~~~l~-~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~g  144 (182)
                      ++++|.||+|+|+.|+.+++. ...++..+. +.+ ....++ .++ .|++|.+|++... ...+.+..|++.+|..+.+
T Consensus       257 ~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i-~vd~~~-~t~-~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~  333 (467)
T 1zk7_A          257 ELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAI-VIDQGM-RTS-NPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTG  333 (467)
T ss_dssp             EEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCB-CCCTTC-BCS-STTEEECSTTBSSCCCHHHHHHHHHHHHHHHTT
T ss_pred             EEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCE-EECCCc-ccC-CCCEEEEeccCCCcccHHHHHHHHHHHHHHHcC
Confidence            789999999999999987642 112334332 223 222222 234 6999999998753 3467889999999998876


Q ss_pred             C
Q 037525          145 Q  145 (182)
Q Consensus       145 ~  145 (182)
                      .
T Consensus       334 ~  334 (467)
T 1zk7_A          334 G  334 (467)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.26  E-value=3.4e-11  Score=102.73  Aligned_cols=142  Identities=15%  Similarity=0.190  Sum_probs=94.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC---------CCCC-CCeEEcceeEEeeC--CC--eEEEcC-
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---------QPGF-DNMWLHSMIESAHD--NG--AVVFRN-   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~---------~~~~-~~i~~~~~v~~~~~--~~--~v~~~d-   65 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|+.....++.         +... -++.....++++..  ++  .+.+.+ 
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~  266 (488)
T 3dgz_A          187 KTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDH  266 (488)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEET
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeC
Confidence            589999999999999999999999999998643221110         0000 12344556666643  22  356654 


Q ss_pred             --Cc--EEecCEEEEecccccCCCCCCC-CCceecC-C-CccccccccccCCCCCCCEEEEeccCC--cccccHHHHHHH
Q 037525           66 --GH--TVHADVILHCTGYKYHFPFLET-NGIVTMD-D-NRVGPLYKHVFPPVLAPWLSFVGLPWK--VIPFPLCEYQSK  136 (182)
Q Consensus        66 --g~--~~~~D~vi~atG~~~~~~~l~~-~~~~~~~-~-~~~~~ly~~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~  136 (182)
                        |+  ++++|.||+|+|++|+.+++.- ..++.++ + +.+ ....++- .+ .|++|.+|++..  ....+.+..|++
T Consensus       267 ~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i-~vd~~~~-t~-~~~IyA~GD~~~~~~~~~~~A~~~g~  343 (488)
T 3dgz_A          267 ASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKI-IVDAQEA-TS-VPHIYAIGDVAEGRPELTPTAIKAGK  343 (488)
T ss_dssp             TTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCB-CCCTTSB-CS-STTEEECGGGBTTCCCCHHHHHHHHH
T ss_pred             CCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeE-eECCCCc-cC-CCCEEEeEEecCCCCcchhHHHHHHH
Confidence              55  3689999999999999887531 1234444 2 223 2222222 24 699999999852  334578899999


Q ss_pred             HHHHHHcCC
Q 037525          137 WIAGVLSGQ  145 (182)
Q Consensus       137 ~ia~~l~g~  145 (182)
                      .++..+.|.
T Consensus       344 ~aa~~i~g~  352 (488)
T 3dgz_A          344 LLAQRLFGK  352 (488)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHcCC
Confidence            999999875

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.26  E-value=2.6e-11  Score=104.01  Aligned_cols=34  Identities=32%  Similarity=0.388  Sum_probs=30.1

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~   34 (182)
                      ||+|||+|+||+|++.+|++.  +.+|+++.|++.+
T Consensus       248 rV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~  283 (501)
T 4b63_A          248 NIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAM  283 (501)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSC
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            599999999999999999874  6789999998654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.24  E-value=6.6e-11  Score=101.95  Aligned_cols=137  Identities=15%  Similarity=0.149  Sum_probs=90.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCC----CCCCCCCCeE--EcceeEEeeCC-C---eEEEcC---Cc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTY----EKQPGFDNMW--LHSMIESAHDN-G---AVVFRN---GH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~----~~~~~~~~i~--~~~~v~~~~~~-~---~v~~~d---g~   67 (182)
                      +|+|||+|++|+|+|..|++.+++|++++|.+.+...    +.+....+|.  .+..++++.++ +   ++.+.|   |+
T Consensus       357 ~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~~~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~  436 (521)
T 1hyu_A          357 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGD  436 (521)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCSCHHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCC
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCcCHHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCc
Confidence            5899999999999999999999999999998765321    0111212444  34677777643 2   466764   54


Q ss_pred             --EEecCEEEEecccccCCCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCcc--cccHHHHHHHHHHHHH
Q 037525           68 --TVHADVILHCTGYKYHFPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKVI--PFPLCEYQSKWIAGVL  142 (182)
Q Consensus        68 --~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~ia~~l  142 (182)
                        .+++|.||+|+|+.|+.+++...  +..+. +.+ ....++- .+ .|++|.+|++...+  ....+..|++.+|..+
T Consensus       437 ~~~i~~D~vi~a~G~~pn~~~l~~~--l~~~~~G~I-~Vd~~~~-ts-~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i  511 (521)
T 1hyu_A          437 IHSVALAGIFVQIGLLPNTHWLEGA--LERNRMGEI-IIDAKCE-TS-VKGVFAAGDCTTVPYKQIIIATGEGAKASLSA  511 (521)
T ss_dssp             EEEEECSEEEECCCEEESCGGGTTT--SCBCTTSCB-CCCTTCB-CS-STTEEECSTTBCCSSCCHHHHHHHHHHHHHHH
T ss_pred             eEEEEcCEEEECcCCCCCchHHhhh--hccCCCCcE-EeCCCCC-CC-CCCEEEeecccCCCcceeeehHHhHHHHHHHH
Confidence              47899999999999998888652  33332 222 2222222 24 69999999987533  3455566666665543

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.22  E-value=3.6e-11  Score=89.07  Aligned_cols=135  Identities=15%  Similarity=0.114  Sum_probs=86.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCC-------CCCCC-----------------C-CCeEEcceeEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTY-------EKQPG-----------------F-DNMWLHSMIESA   55 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~-------~~~~~-----------------~-~~i~~~~~v~~~   55 (182)
                      +|+|||+|++|+++|..|++...+|+++.+++.....       ..+|.                 . -++... .++++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            5899999999999999999999999999987632100       00110                 0 023344 66676


Q ss_pred             eCC-C--eEEEcCCcEEecCEEEEecccccCCCCCCCCCceecCCCcc-ccccccccCCCCCCCEEEEeccCCcc--ccc
Q 037525           56 HDN-G--AVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRV-GPLYKHVFPPVLAPWLSFVGLPWKVI--PFP  129 (182)
Q Consensus        56 ~~~-~--~v~~~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~-~~ly~~~~~~~~~p~l~~iG~~~~~~--~~~  129 (182)
                      ..+ +  .+.+.+| ++++|.||+|+|..++.  +.. .+++.+.+.+ ..-+..   .+ .|++|.+|++....  ...
T Consensus        82 ~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~--~~~-~g~~~~~g~i~vd~~~~---t~-~~~i~a~GD~~~~~~~~~~  153 (180)
T 2ywl_A           82 RDMGGVFEVETEEG-VEKAERLLLCTHKDPTL--PSL-LGLTRRGAYIDTDEGGR---TS-YPRVYAAGVARGKVPGHAI  153 (180)
T ss_dssp             EECSSSEEEECSSC-EEEEEEEEECCTTCCHH--HHH-HTCCEETTEECCCTTCB---CS-STTEEECGGGGTCCSCCHH
T ss_pred             EEcCCEEEEEECCC-EEEECEEEECCCCCCCc--ccc-CCCCccCceEEeCCCCC---cC-CCCEEEeecccCcchhhHH
Confidence            532 2  3666677 78999999999998752  111 1122222222 112222   24 69999999987432  456


Q ss_pred             HHHHHHHHHHHHHcC
Q 037525          130 LCEYQSKWIAGVLSG  144 (182)
Q Consensus       130 ~~e~qa~~ia~~l~g  144 (182)
                      .+..|++.+|..+.+
T Consensus       154 ~A~~~g~~aa~~i~~  168 (180)
T 2ywl_A          154 ISAGDGAYVAVHLVS  168 (180)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHH
Confidence            777888888877654

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.22  E-value=2.4e-11  Score=103.96  Aligned_cols=140  Identities=13%  Similarity=0.166  Sum_probs=94.3

Q ss_pred             CEEEEcCCccHHHHHHHHhcc----CCeEEEEeccCCCCCCCCCCC-----------CCC--eEEcceeEEeeCC-C--e
Q 037525            1 VIILVGSSASAVDICRDLAGV----AKEVHLVSRSVADGTYEKQPG-----------FDN--MWLHSMIESAHDN-G--A   60 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~----a~~V~l~~r~~~~~~~~~~~~-----------~~~--i~~~~~v~~~~~~-~--~   60 (182)
                      +|+|||+|++|+|+|..|++.    ..+|+++.+.+... ...++.           ...  +..+..|+++..+ +  .
T Consensus       182 ~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~-~~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~  260 (493)
T 1m6i_A          182 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM-GKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLL  260 (493)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT-TTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccc-cccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEE
Confidence            589999999999999999873    46799998765321 111111           112  3345577777532 2  4


Q ss_pred             EEEcCCcEEecCEEEEecccccCCCCCCCCCceecCC--CccccccccccCCCCCCCEEEEeccCCc----------ccc
Q 037525           61 VVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDD--NRVGPLYKHVFPPVLAPWLSFVGLPWKV----------IPF  128 (182)
Q Consensus        61 v~~~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~--~~~~~ly~~~~~~~~~p~l~~iG~~~~~----------~~~  128 (182)
                      +++.||+++++|.||+|+|+.|+.+++.. .++.+++  +.+ ....++-.   .|++|.+|++...          ..+
T Consensus       261 v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~-~gl~~~~~~ggi-~Vd~~l~t---~~~IyA~GD~a~~~~~~~g~~~~~~~  335 (493)
T 1m6i_A          261 IKLKDGRKVETDHIVAAVGLEPNVELAKT-GGLEIDSDFGGF-RVNAELQA---RSNIWVAGDAACFYDIKLGRRRVEHH  335 (493)
T ss_dssp             EEETTSCEEEESEEEECCCEEECCTTHHH-HTCCBCTTTCSE-ECCTTCEE---ETTEEECGGGEEEEETTTEEECCCCH
T ss_pred             EEECCCCEEECCEEEECCCCCccHHHHHH-cCCccccCCCcE-EECCCccc---CCCeeEeeeeEeccCcccCccccchH
Confidence            67889999999999999999999887643 2334332  232 12222211   3899999998531          124


Q ss_pred             cHHHHHHHHHHHHHcCCC
Q 037525          129 PLCEYQSKWIAGVLSGQI  146 (182)
Q Consensus       129 ~~~e~qa~~ia~~l~g~~  146 (182)
                      +.+..|++.+|+.+.|..
T Consensus       336 ~~A~~qg~~aa~ni~g~~  353 (493)
T 1m6i_A          336 DHAVVSGRLAGENMTGAA  353 (493)
T ss_dssp             HHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence            588999999999998763

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.20  E-value=1.7e-10  Score=91.98  Aligned_cols=118  Identities=14%  Similarity=0.087  Sum_probs=74.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC----CCCCCCeE--EcceeEEeeC--C--CeEEEc-----C
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK----QPGFDNMW--LHSMIESAHD--N--GAVVFR-----N   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~----~~~~~~i~--~~~~v~~~~~--~--~~v~~~-----d   65 (182)
                      +|+|||+|++|+|+|..|++.+++|++++|.........    ......+.  ....+.++..  +  .++.+.     +
T Consensus       154 ~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  233 (314)
T 4a5l_A          154 VLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRASKTMQERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGE  233 (314)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCC
T ss_pred             eEEEECCChHHHHHHHHHHHhCCeeeeecccccccccchhhhhhhcccceeeEeeeeeEEEEeeeeccceeEEeeccccc
Confidence            489999999999999999999999999998765432110    00011111  1222233321  1  134432     3


Q ss_pred             CcEEecCEEEEecccccCCCCCCCCCceecCCC-ccccccccccCCCCCCCEEEEeccCC
Q 037525           66 GHTVHADVILHCTGYKYHFPFLETNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWK  124 (182)
Q Consensus        66 g~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~  124 (182)
                      ++++++|.|++|+|.+|+.+++...  +..+++ .+..-+.   .++ .|++|.+|++..
T Consensus       234 ~~~i~~d~vi~a~G~~pn~~~l~~~--~~~~~~G~iv~~~~---~Ts-~pgIyA~GDv~~  287 (314)
T 4a5l_A          234 YKVVPVAGLFYAIGHSPNSKFLGGQ--VKTADDGYILTEGP---KTS-VDGVFACGDVCD  287 (314)
T ss_dssp             EEEEECSEEEECSCEEESCGGGTTS--SCBCTTSCBCCBTT---BCS-STTEEECSTTTC
T ss_pred             ceeeccccceEecccccChhHhccc--ceEcCCeeEeCCCC---ccC-CCCEEEEEeccC
Confidence            4568999999999999999888653  223322 2212222   234 799999999864

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.20  E-value=7.7e-11  Score=102.15  Aligned_cols=141  Identities=15%  Similarity=0.081  Sum_probs=95.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC---------CCCC-CCeEEcceeEEeeC-CC--eEEEcCCc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---------QPGF-DNMWLHSMIESAHD-NG--AVVFRNGH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~---------~~~~-~~i~~~~~v~~~~~-~~--~v~~~dg~   67 (182)
                      +++|||||++|+|+|..+++.+.+|+++.|...+..++.         +... -++.....++++.. ++  .+.+.+++
T Consensus       225 ~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~  304 (542)
T 4b1b_A          225 KTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKT  304 (542)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSC
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEecccccccccchhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCC
Confidence            589999999999999999999999999987543321110         0000 12334455666543 22  35667888


Q ss_pred             EEecCEEEEecccccCCCCCCCC-CceecCCC-cc--ccccccccCCCCCCCEEEEeccCCc--ccccHHHHHHHHHHHH
Q 037525           68 TVHADVILHCTGYKYHFPFLETN-GIVTMDDN-RV--GPLYKHVFPPVLAPWLSFVGLPWKV--IPFPLCEYQSKWIAGV  141 (182)
Q Consensus        68 ~~~~D~vi~atG~~~~~~~l~~~-~~~~~~~~-~~--~~ly~~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~ia~~  141 (182)
                      .+++|.|++|+|.+|+++.|..+ .++.++.. ..  .+-|..   ++ .|++|.+|+...+  ...+.+..|++.++..
T Consensus       305 ~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~---Ts-~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~  380 (542)
T 4b1b_A          305 SELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSC---TN-IPSIFAVGDVAENVPELAPVAIKAGEILARR  380 (542)
T ss_dssp             EEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSB---CS-STTEEECTTSBTTCCCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEEcccccCCccccCcccceeeecccCceEecccccc---cc-CCCeEEeccccCCchhHHHHHHHHHHHHHHH
Confidence            88999999999999998877532 12333222 11  122332   24 6999999998643  3456888999999999


Q ss_pred             HcCC
Q 037525          142 LSGQ  145 (182)
Q Consensus       142 l~g~  145 (182)
                      +.|.
T Consensus       381 i~g~  384 (542)
T 4b1b_A          381 LFKD  384 (542)
T ss_dssp             HHSC
T ss_pred             HhcC
Confidence            8775

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.20  E-value=1.7e-10  Score=99.34  Aligned_cols=141  Identities=16%  Similarity=0.193  Sum_probs=91.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC---------CCCCCC--eEEcceeEEee---CC--CeE--E
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---------QPGFDN--MWLHSMIESAH---DN--GAV--V   62 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~---------~~~~~~--i~~~~~v~~~~---~~--~~v--~   62 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|+.....++.         +.. ..  +.....++++.   ++  +.+  .
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~-~GV~v~~~~~v~~v~~~~~~~~~~~~v~  290 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEE-HGIKFIRQFVPIKVEQIEAGTPGRLRVV  290 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHHH-TTCEEEESEEEEEEEEEECCTTCEEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEecccccccCCHHHHHHHHHHHHH-CCCEEEeCCeEEEEEEccCCCCceEEEE
Confidence            589999999999999999999999999998532221110         000 12  33333334432   21  223  3


Q ss_pred             E--cCCc---EEecCEEEEecccccCCCCCC-CCCceecC--CCccccccccccCCCCCCCEEEEeccC-C-cccccHHH
Q 037525           63 F--RNGH---TVHADVILHCTGYKYHFPFLE-TNGIVTMD--DNRVGPLYKHVFPPVLAPWLSFVGLPW-K-VIPFPLCE  132 (182)
Q Consensus        63 ~--~dg~---~~~~D~vi~atG~~~~~~~l~-~~~~~~~~--~~~~~~ly~~~~~~~~~p~l~~iG~~~-~-~~~~~~~e  132 (182)
                      +  .+|.   .+++|.||+|+|++|+.+++. ...+++++  .+.+ ....++- ++ .|++|.+|++. . ....+.+.
T Consensus       291 ~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I-~Vd~~~~-Ts-~~~IyA~GD~~~g~~~~~~~A~  367 (519)
T 3qfa_A          291 AQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKI-PVTDEEQ-TN-VPYIYAIGDILEDKVELTPVAI  367 (519)
T ss_dssp             EEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCB-CCCTTSB-CS-STTEEECGGGBSSSCCCHHHHH
T ss_pred             EEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeE-eeCCCCc-cC-CCCEEEEEeccCCCCccHHHHH
Confidence            2  3553   457999999999999988753 22345543  2323 2222222 34 69999999986 3 33457889


Q ss_pred             HHHHHHHHHHcCC
Q 037525          133 YQSKWIAGVLSGQ  145 (182)
Q Consensus       133 ~qa~~ia~~l~g~  145 (182)
                      .|++.+|..+.|.
T Consensus       368 ~~g~~aa~~i~g~  380 (519)
T 3qfa_A          368 QAGRLLAQRLYAG  380 (519)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999999865

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.19  E-value=2.5e-11  Score=103.18  Aligned_cols=140  Identities=12%  Similarity=0.063  Sum_probs=82.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCCCCCCCCCC-----CCCe--EEcceeEEeeCCCe---EEE------
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVADGTYEKQPG-----FDNM--WLHSMIESAHDNGA---VVF------   63 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~~~~~~~~~-----~~~i--~~~~~v~~~~~~~~---v~~------   63 (182)
                      +|+|||+|++|+|+|..+.+.+ ++|++++|++...++.....     ...+  .....+.++.+++.   +++      
T Consensus       266 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~~~~~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~~~~~  345 (456)
T 2vdc_G          266 HVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTGDTVVTGVRAVRIHLG  345 (456)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHHHHHHHHTTCEEECCSSSCCEEEEEEEETTEEEEEEEE
T ss_pred             EEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHHHHHHHHCCCEEEeCCCceEEeCCCcEEEEEEEEEEec
Confidence            5899999999999999998875 47999999875422210000     0011  12222233321111   111      


Q ss_pred             ------------cCCc--EEecCEEEEecccccCCC--CCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-
Q 037525           64 ------------RNGH--TVHADVILHCTGYKYHFP--FLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-  125 (182)
Q Consensus        64 ------------~dg~--~~~~D~vi~atG~~~~~~--~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-  125 (182)
                                  .+|+  ++++|.||+|+|+.++..  ++... .+.++. +.+ ......+.++ .|++|.+|+...+ 
T Consensus       346 ~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~-gl~~~~~G~i-~vd~~~~~Ts-~~~VfA~GD~~~g~  422 (456)
T 2vdc_G          346 VADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEP-ELKVTRWGTL-LVDHRTKMTN-MDGVFAAGDIVRGA  422 (456)
T ss_dssp             EEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHST-TSCBCTTSSB-CCCTTTCBCS-STTEEECGGGGSSC
T ss_pred             ccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccC-CeeECCCCCE-EECCCCCcCC-CCCEEEeccccCCc
Confidence                        1343  578999999999998754  55432 333332 222 2222223344 6999999998643 


Q ss_pred             ccccHHHHHHHHHHHHHc
Q 037525          126 IPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus       126 ~~~~~~e~qa~~ia~~l~  143 (182)
                      .....+..|++.+|..+.
T Consensus       423 ~~v~~A~~~G~~aA~~i~  440 (456)
T 2vdc_G          423 SLVVWAIRDGRDAAEGIH  440 (456)
T ss_dssp             CSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            345666777777766554

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.17  E-value=8.2e-11  Score=99.24  Aligned_cols=122  Identities=18%  Similarity=0.254  Sum_probs=75.0

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCCC------------------------------CCCC--C---
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTYE------------------------------KQPG--F---   43 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~~------------------------------~~~~--~---   43 (182)
                      +|+|||+|.||+|+|.+|++.  +++|++++|++.+...+                              ....  +   
T Consensus       229 ~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  308 (463)
T 3s5w_A          229 KIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVV  308 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCB
T ss_pred             eEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcC
Confidence            589999999999999999998  88999999987542100                              0000  0   


Q ss_pred             --------------------CC--eEEcceeEEeeCC-C--eEEEc---CCcE--EecCEEEEecccccC--CCCCCCCC
Q 037525           44 --------------------DN--MWLHSMIESAHDN-G--AVVFR---NGHT--VHADVILHCTGYKYH--FPFLETNG   91 (182)
Q Consensus        44 --------------------~~--i~~~~~v~~~~~~-~--~v~~~---dg~~--~~~D~vi~atG~~~~--~~~l~~~~   91 (182)
                                          .+  +.....|+++..+ +  .+.+.   +|+.  +++|.||+|||++++  .+++....
T Consensus       309 ~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~  388 (463)
T 3s5w_A          309 DTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLA  388 (463)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGG
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHH
Confidence                                12  2334566666532 2  36665   6764  789999999999998  56665421


Q ss_pred             ceecCCCccccccccccCCCCCCCEEEEeccC
Q 037525           92 IVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPW  123 (182)
Q Consensus        92 ~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~  123 (182)
                       .....-.+.+-|+-.......|++|.+|.+.
T Consensus       389 -~~~g~i~v~~~~~~~~~~~~~~~Ifa~G~~~  419 (463)
T 3s5w_A          389 -EYLGDHEIGRDYRLQTDERCKVAIYAQGFSQ  419 (463)
T ss_dssp             -GGBC--CCCTTSBCCBCTTBCSEEEESSCCH
T ss_pred             -HHhCCcccCcccccccCCCCCCeEEEcCCCc
Confidence             1111111111222111111147899999875

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.11  E-value=4.9e-10  Score=93.22  Aligned_cols=131  Identities=15%  Similarity=0.059  Sum_probs=84.5

Q ss_pred             HHHHHHHHh----ccC----CeEEEEeccCCCCCCCC-----CC---CCCCeE--EcceeEEeeCCCeEEEcCCcEEecC
Q 037525           11 AVDICRDLA----GVA----KEVHLVSRSVADGTYEK-----QP---GFDNMW--LHSMIESAHDNGAVVFRNGHTVHAD   72 (182)
Q Consensus        11 g~d~A~~l~----~~a----~~V~l~~r~~~~~~~~~-----~~---~~~~i~--~~~~v~~~~~~~~v~~~dg~~~~~D   72 (182)
                      ++|+|..++    +.+    .+|+++++.+....++.     +.   ...+|.  .+..|++++++ +|++.||+++++|
T Consensus       182 ~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~-~v~~~~g~~~~~D  260 (409)
T 3h8l_A          182 VFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREH-EIVDEKGNTIPAD  260 (409)
T ss_dssp             HHHHHHHHHHHHHTTTCTTTEEEEEECSSSSSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSS-EEEETTSCEEECS
T ss_pred             HHHHHHHHHHHHHHcCCCCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEcCCceEEECCC-eEEECCCCEEeee
Confidence            788887665    333    37999998762211110     00   001333  34678899764 7999999999999


Q ss_pred             EEEEecccccCCCCCCCC-CceecCCCccccccccccCCCCCCCEEEEeccCC---cccccHHHHHHHHHHHHHcCC
Q 037525           73 VILHCTGYKYHFPFLETN-GIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK---VIPFPLCEYQSKWIAGVLSGQ  145 (182)
Q Consensus        73 ~vi~atG~~~~~~~l~~~-~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~---~~~~~~~e~qa~~ia~~l~g~  145 (182)
                      .||+|+|+.++ +++... ..+...++.+ .....+.+++ .||+|.+|++..   ......++.|++.+|+.+.+.
T Consensus       261 ~vi~a~G~~~~-~~l~~~~~~l~~~~G~i-~vd~~~~~~~-~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~  334 (409)
T 3h8l_A          261 ITILLPPYTGN-PALKNSTPDLVDDGGFI-PTDLNMVSIK-YDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANR  334 (409)
T ss_dssp             EEEEECCEECC-HHHHTSCGGGSCTTSCB-CBBTTSBBSS-CTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcc-HHHHhccccCcCCCCCE-EeCcccccCC-CCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999987 455442 1222122333 3444444456 699999999874   234578899999998887543

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.06  E-value=2.1e-10  Score=91.75  Aligned_cols=138  Identities=17%  Similarity=0.085  Sum_probs=80.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC----CCCCCCeEEc--ceeEEee--CC--Ce--EE-EcC--
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK----QPGFDNMWLH--SMIESAH--DN--GA--VV-FRN--   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~----~~~~~~i~~~--~~v~~~~--~~--~~--v~-~~d--   65 (182)
                      +|+|||+|++|+|+|..|++.+++|++++|++.+.....    ......+...  ..+....  +.  ..  .. ..+  
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGS  226 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcchhHHHHHHHhcCcceeeecceeeeeccccccccceeeeecCCc
Confidence            589999999999999999999999999999875431100    0000112111  1111111  10  01  11 122  


Q ss_pred             CcEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCCcc--cccHHHHHHHHHHHHH
Q 037525           66 GHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVI--PFPLCEYQSKWIAGVL  142 (182)
Q Consensus        66 g~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~ia~~l  142 (182)
                      +..+++|.|++++|..++..++... .+..+.+.+ ....++ .++ .|++|.+|++...+  ....+..|++.+|..+
T Consensus       227 ~~~~~~d~v~~~~g~~~~~~~~~~~-g~~~~~G~I-~vd~~~-~Ts-~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i  301 (312)
T 4gcm_A          227 EETHEADGVFIYIGMKPLTAPFKDL-GITNDVGYI-VTKDDM-TTS-VPGIFAAGDVRDKGLRQIVTATGDGSIAAQSA  301 (312)
T ss_dssp             EEEEECSEEEECSCEEESCGGGGGG-TCBCTTSCB-CCCTTS-BCS-STTEEECSTTBSCSCCSHHHHHHHHHHHHHHH
T ss_pred             eeEEeeeeEEeecCCCcCchhHHhc-ceecCCCeE-eeCCCC-ccC-CCCEEEEeecCCCcchHHHHHHHHHHHHHHHH
Confidence            3357899999999999998776542 233233333 222222 224 69999999986422  3445666766666544

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.03  E-value=2.5e-10  Score=101.37  Aligned_cols=130  Identities=9%  Similarity=0.002  Sum_probs=93.2

Q ss_pred             CEEEEc--CCccHHHHHHHHhccCCeEEEEeccCCCCCC---CC--------CCCC-CCeEEcceeEEeeCCCeEEEc--
Q 037525            1 VIILVG--SSASAVDICRDLAGVAKEVHLVSRSVADGTY---EK--------QPGF-DNMWLHSMIESAHDNGAVVFR--   64 (182)
Q Consensus         1 ~V~VVG--~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~---~~--------~~~~-~~i~~~~~v~~~~~~~~v~~~--   64 (182)
                      +|+|||  +|.+|+|+|..|++.+++|+++++.+.+...   ..        +... -++..+..|+++.++ ++.+.  
T Consensus       525 ~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~-~~~v~~~  603 (690)
T 3k30_A          525 KVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAG-GVTVRDT  603 (690)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETT-EEEEEET
T ss_pred             EEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECC-eEEEEEc
Confidence            489999  9999999999999999999999987654210   00        0001 134456778888764 45443  


Q ss_pred             ---CCcEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCCcccccHHHHHHHHHHHH
Q 037525           65 ---NGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGV  141 (182)
Q Consensus        65 ---dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~ia~~  141 (182)
                         +++++++|.||+|+|++++.+++...   ...      ..    .++ .|++|.+|++.....+..+..|++.+|..
T Consensus       604 ~~~~~~~i~aD~VV~A~G~~p~~~l~~~l---~~~------~~----~t~-~~~VyaiGD~~~~~~~~~A~~~g~~aa~~  669 (690)
T 3k30_A          604 YASIERELECDAVVMVTARLPREELYLDL---VAR------RD----AGE-IASVRGIGDAWAPGTIAAAVWSGRRAAEE  669 (690)
T ss_dssp             TTCCEEEEECSEEEEESCEEECCHHHHHH---HHH------HH----HTS-CSEEEECGGGTSCBCHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCEEEECCCCCCChHHHHHH---hhh------hc----ccC-CCCEEEEeCCCchhhHHHHHHHHHHHHHH
Confidence               34568999999999999987654321   000      01    234 69999999988666667789999999999


Q ss_pred             HcCC
Q 037525          142 LSGQ  145 (182)
Q Consensus       142 l~g~  145 (182)
                      +.+.
T Consensus       670 i~~~  673 (690)
T 3k30_A          670 FDAV  673 (690)
T ss_dssp             TTCC
T ss_pred             HHhh
Confidence            9876

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.03  E-value=1.2e-09  Score=92.79  Aligned_cols=135  Identities=16%  Similarity=0.147  Sum_probs=83.2

Q ss_pred             CEEEEcCCccHHHHHHHHhcc---------------------CCeEEEEeccCCCCC-CC--------CCC---------
Q 037525            1 VIILVGSSASAVDICRDLAGV---------------------AKEVHLVSRSVADGT-YE--------KQP---------   41 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~---------------------a~~V~l~~r~~~~~~-~~--------~~~---------   41 (182)
                      +|+|||+|++|+|+|..|++.                     +++|+++.|+++... +.        .+|         
T Consensus       149 ~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~  228 (456)
T 1lqt_A          149 RAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPA  228 (456)
T ss_dssp             EEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGG
T ss_pred             EEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChH
Confidence            489999999999999999984                     469999999875311 00        011         


Q ss_pred             -----------------------------C-----CCCeEE--cceeEEeeCCC---eEEEc----------------CC
Q 037525           42 -----------------------------G-----FDNMWL--HSMIESAHDNG---AVVFR----------------NG   66 (182)
Q Consensus        42 -----------------------------~-----~~~i~~--~~~v~~~~~~~---~v~~~----------------dg   66 (182)
                                                   .     ..+|.+  ...+.++.+++   +|.+.                +|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g  308 (456)
T 1lqt_A          229 ELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTG  308 (456)
T ss_dssp             GGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEE
T ss_pred             HhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCC
Confidence                                         0     012332  34566665432   36664                35


Q ss_pred             --cEEecCEEEEecccccCCCCCCCCCceecCC-Ccc-ccccccccCCCCCCCEEEEeccCCcc--cccHHHHHHHHHHH
Q 037525           67 --HTVHADVILHCTGYKYHFPFLETNGIVTMDD-NRV-GPLYKHVFPPVLAPWLSFVGLPWKVI--PFPLCEYQSKWIAG  140 (182)
Q Consensus        67 --~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~-~~~-~~ly~~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~ia~  140 (182)
                        +++++|.||+|+||+++. + .   .+.+++ +.+ ..-+..+  .+ .|++|.+|++..++  ....+..||+.+|.
T Consensus       309 ~~~~i~~d~vi~a~G~~p~~-l-~---gl~~d~~g~i~vn~~~rv--t~-~pgvya~GD~~~gp~~~i~~a~~~g~~~a~  380 (456)
T 1lqt_A          309 EREELPAQLVVRSVGYRGVP-T-P---GLPFDDQSGTIPNVGGRI--NG-SPNEYVVGWIKRGPTGVIGTNKKDAQDTVD  380 (456)
T ss_dssp             EEEEEECSEEEECSCEECCC-C-T---TSCCBTTTTBCCEETTEE--TT-CSSEEECTHHHHCSCSCTTHHHHHHHHHHH
T ss_pred             ceEEEEcCEEEEccccccCC-C-C---CCcccCCCCeeECCCCcC--CC-CCCEEEEeccCCCCchhHHHHHHHHHHHHH
Confidence              357999999999999985 2 2   122222 222 1122221  24 69999999986322  24456677777776


Q ss_pred             HHc
Q 037525          141 VLS  143 (182)
Q Consensus       141 ~l~  143 (182)
                      .+.
T Consensus       381 ~i~  383 (456)
T 1lqt_A          381 TLI  383 (456)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.02  E-value=8.4e-10  Score=92.81  Aligned_cols=139  Identities=9%  Similarity=0.012  Sum_probs=85.2

Q ss_pred             CEEEEcCCccH------HHHHHHHhc----cCC----e-EEEEeccCCCCC--CCCCCCC----------CCe--EEcce
Q 037525            1 VIILVGSSASA------VDICRDLAG----VAK----E-VHLVSRSVADGT--YEKQPGF----------DNM--WLHSM   51 (182)
Q Consensus         1 ~V~VVG~G~sg------~d~A~~l~~----~a~----~-V~l~~r~~~~~~--~~~~~~~----------~~i--~~~~~   51 (182)
                      +++|||+|++|      +|+|.+++.    ...    + |+++++++....  ....+..          ..|  ..+..
T Consensus       151 ~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~  230 (437)
T 3sx6_A          151 GPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCK  230 (437)
T ss_dssp             CCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECSEE
T ss_pred             CEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcCCE
Confidence            36899998876      999976664    332    2 999998764311  1111110          123  34567


Q ss_pred             eEEeeCCCeEEEcC---------CcEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEecc
Q 037525           52 IESAHDNGAVVFRN---------GHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLP  122 (182)
Q Consensus        52 v~~~~~~~~v~~~d---------g~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~  122 (182)
                      |++++++ ++++.+         ++++++|.+++|+|+.+..++... ..+..+.+.+ ....++.+++ .||+|.+|++
T Consensus       231 v~~v~~~-~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~-~gl~~~~G~i-~Vd~~l~t~~-~~~Ifa~GD~  306 (437)
T 3sx6_A          231 VTKVEDN-KMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGV-EGLCNPGGFV-LVDEHQRSKK-YANIFAAGIA  306 (437)
T ss_dssp             EEEEETT-EEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTS-TTTBCTTSCB-CBCTTSBBSS-CTTEEECGGG
T ss_pred             EEEEECC-eEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhcc-ccccCCCCcE-EeChhccCCC-CCCEEEEEEE
Confidence            8888764 677664         566899999999999876332221 1222122333 3334444445 6999999998


Q ss_pred             CCcc-------------cccHHHHHHHHHHHHHc
Q 037525          123 WKVI-------------PFPLCEYQSKWIAGVLS  143 (182)
Q Consensus       123 ~~~~-------------~~~~~e~qa~~ia~~l~  143 (182)
                      ....             ....+..|++.+|..|.
T Consensus       307 ~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~  340 (437)
T 3sx6_A          307 IAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIK  340 (437)
T ss_dssp             BCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             eccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            6321             24577888888877764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.94  E-value=2.8e-09  Score=90.51  Aligned_cols=69  Identities=17%  Similarity=0.106  Sum_probs=42.3

Q ss_pred             cEEecCEEEEecccccCCCCCCCCCce-ecCC-Ccc-ccccccccCCCCCCCEEEEeccCCcc--cccHHHHHHHHHHHH
Q 037525           67 HTVHADVILHCTGYKYHFPFLETNGIV-TMDD-NRV-GPLYKHVFPPVLAPWLSFVGLPWKVI--PFPLCEYQSKWIAGV  141 (182)
Q Consensus        67 ~~~~~D~vi~atG~~~~~~~l~~~~~~-~~~~-~~~-~~ly~~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~ia~~  141 (182)
                      +.+++|.||+|+||+++. + .   ++ ++++ +.+ ..-+..+  .+ .|++|.+|++..++  .+..+..|++.+|..
T Consensus       318 ~~i~~d~Vi~a~G~~p~~-l-~---gl~~~d~~g~i~vn~~~rt--~~-~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~  389 (460)
T 1cjc_A          318 EDLPCGLVLSSIGYKSRP-I-D---PSVPFDPKLGVVPNMEGRV--VD-VPGLYCSGWVKRGPTGVITTTMTDSFLTGQI  389 (460)
T ss_dssp             EEEECSEEEECCCEECCC-C-C---TTSCCBTTTTBCCEETTEE--TT-CTTEEECTHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEcCEEEECCCCCCCC-C-C---CCcccccCCCeeECCCCcC--cC-CCCEEEEEeCCcCCCccHHHHHHHHHHHHHH
Confidence            467999999999999985 2 1   22 3332 222 1222222  22 49999999986422  234566777777666


Q ss_pred             Hc
Q 037525          142 LS  143 (182)
Q Consensus       142 l~  143 (182)
                      +.
T Consensus       390 i~  391 (460)
T 1cjc_A          390 LL  391 (460)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.93  E-value=2e-09  Score=98.91  Aligned_cols=137  Identities=16%  Similarity=0.176  Sum_probs=93.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCC-CCCCCC-CCeEEcceeEEeeC--CC---eEEEcC-------C
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTY-EKQPGF-DNMWLHSMIESAHD--NG---AVVFRN-------G   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~-~~~~~~-~~i~~~~~v~~~~~--~~---~v~~~d-------g   66 (182)
                      +|+|||+|++|+|+|..|++.+.+|+++++++..... ..+... -++.....|+++.+  ++   +|++.+       |
T Consensus       286 ~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G  365 (965)
T 2gag_A          286 RIAVATTNDSAYELVRELAATGGVVAVIDARSSISAAAAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELG  365 (965)
T ss_dssp             SEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEE
T ss_pred             eEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccchhHHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCC
Confidence            5899999999999999999998889999987653200 000000 13555667777764  32   577765       5


Q ss_pred             --cEEecCEEEEecccccCCCCCCCC-CceecCCCcccccccccc--CCCCCCCEEEEeccCCcccccHHHHHHHHHHHH
Q 037525           67 --HTVHADVILHCTGYKYHFPFLETN-GIVTMDDNRVGPLYKHVF--PPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGV  141 (182)
Q Consensus        67 --~~~~~D~vi~atG~~~~~~~l~~~-~~~~~~~~~~~~ly~~~~--~~~~~p~l~~iG~~~~~~~~~~~e~qa~~ia~~  141 (182)
                        +++++|.||+|+|++|+..++... +.+.+++.      ...+  ..+ .|++|.+|++.....+..+..|++.+|..
T Consensus       366 ~~~~i~~D~Vv~a~G~~P~~~l~~~~~g~i~vd~~------~~~~v~~ts-~p~IyAaGD~a~~~~l~~A~~~G~~aA~~  438 (965)
T 2gag_A          366 GTQRFEADVLAVAGGFNPVVHLHSQRQGKLDWDTT------IHAFVPADA-VANQHLAGAMTGRLDTASALSTGAATGAA  438 (965)
T ss_dssp             EEEEEECSEEEEECCEEECCHHHHHTTCCEEEETT------TTEEEECSC-CTTEEECGGGGTCCSHHHHHHHHHHHHHH
T ss_pred             ceEEEEcCEEEECCCcCcChHHHHhCCCcEEEcCc------ccccccCCC-CCCEEEEEecCCchhHHHHHHHHHHHHHH
Confidence              468999999999999997765432 12333321      1111  134 69999999987544445778888888888


Q ss_pred             HcC
Q 037525          142 LSG  144 (182)
Q Consensus       142 l~g  144 (182)
                      +.+
T Consensus       439 i~~  441 (965)
T 2gag_A          439 AAT  441 (965)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.89  E-value=3.5e-09  Score=97.86  Aligned_cols=140  Identities=15%  Similarity=0.107  Sum_probs=82.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCCCCCCCCCC------CCCeE--EcceeEEeeC-CCe---EEEc---
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVADGTYEKQPG------FDNMW--LHSMIESAHD-NGA---VVFR---   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~~~~~~~~~------~~~i~--~~~~v~~~~~-~~~---v~~~---   64 (182)
                      +|+|||||++|+|+|..+++.+ ++|++++|++..... ..+.      ...+.  ....+.++.. ++.   |++.   
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~-~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~  412 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR-AVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTE  412 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC-SCHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCC-CCHHHHHHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeE
Confidence            5899999999999999999976 589999987632111 0000      01222  2234444432 122   3332   


Q ss_pred             ---C-------C--cEEecCEEEEecccccC-CCCCCCCCceecCC-CccccccccccCCCCCCCEEEEeccCCc-cccc
Q 037525           65 ---N-------G--HTVHADVILHCTGYKYH-FPFLETNGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFP  129 (182)
Q Consensus        65 ---d-------g--~~~~~D~vi~atG~~~~-~~~l~~~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~  129 (182)
                         +       |  .++++|.||+|+|+.++ ..++....++.+++ +.+ ......+.++ .|++|.+|+...+ ....
T Consensus       413 ~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I-~vd~~~~~Ts-~~~VfA~GD~~~~~~~~~  490 (1025)
T 1gte_A          413 QDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLP-EVDPETMQTS-EPWVFAGGDIVGMANTTV  490 (1025)
T ss_dssp             ECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSB-CCCTTTCBCS-STTEEECSGGGCSCCCHH
T ss_pred             EcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCE-EECCCCCccC-CCCEEEeCCCCCCchHHH
Confidence               2       2  25789999999999864 33333211233332 222 2221112234 6999999998753 3455


Q ss_pred             HHHHHHHHHHHHHc
Q 037525          130 LCEYQSKWIAGVLS  143 (182)
Q Consensus       130 ~~e~qa~~ia~~l~  143 (182)
                      .+..|++.+|..+.
T Consensus       491 ~A~~~G~~aA~~i~  504 (1025)
T 1gte_A          491 ESVNDGKQASWYIH  504 (1025)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            66778887777764

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.88  E-value=5.7e-09  Score=92.36  Aligned_cols=121  Identities=11%  Similarity=0.119  Sum_probs=81.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-------------------------------------eEEEEeccCCCCCCCCCCC-
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-------------------------------------EVHLVSRSVADGTYEKQPG-   42 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-------------------------------------~V~l~~r~~~~~~~~~~~~-   42 (182)
                      +|+|||+|++|+|+|..|++.+.                                     +|+++.+.+... ...+.. 
T Consensus       496 ~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l-~~~l~~~  574 (671)
T 1ps9_A          496 KVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKP-GQGLGKT  574 (671)
T ss_dssp             EEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCT-TTTSCTT
T ss_pred             eEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhh-ccccccc
Confidence            58999999999999999997653                                     455555543211 011110 


Q ss_pred             ----------CCCe--EEcceeEEeeCCCeEEE-cCC--cEEecCEEEEecccccCCCCCCCCCceecCCCccccccccc
Q 037525           43 ----------FDNM--WLHSMIESAHDNGAVVF-RNG--HTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHV  107 (182)
Q Consensus        43 ----------~~~i--~~~~~v~~~~~~~~v~~-~dg--~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~  107 (182)
                                ..+|  .....++++.++ ++++ .+|  +++++|.||+|+|++++.+++..   +.             
T Consensus       575 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~-~v~~~~~G~~~~i~~D~Vi~a~G~~p~~~l~~~---l~-------------  637 (671)
T 1ps9_A          575 TGWIHRTTLLSRGVKMIPGVSYQKIDDD-GLHVVINGETQVLAVDNVVICAGQEPNRALAQP---LI-------------  637 (671)
T ss_dssp             THHHHHHHHHHTTCEEECSCEEEEEETT-EEEEEETTEEEEECCSEEEECCCEEECCTTHHH---HH-------------
T ss_pred             cHHHHHHHHHhcCCEEEeCcEEEEEeCC-eEEEecCCeEEEEeCCEEEECCCccccHHHHHH---HH-------------
Confidence                      0123  334667788764 6777 688  46899999999999998766432   10             


Q ss_pred             cCCCCCCCEEEEeccCCcc--cccHHHHHHHHHHHHH
Q 037525          108 FPPVLAPWLSFVGLPWKVI--PFPLCEYQSKWIAGVL  142 (182)
Q Consensus       108 ~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~ia~~l  142 (182)
                       . . .+++|.+|++....  ....+..|+..+|..|
T Consensus       638 -~-~-g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          638 -D-S-GKTVHLIGGCDVAMELDARRAIAQGTRLALEI  671 (671)
T ss_dssp             -T-T-TCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred             -h-c-CCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence             1 1 36899999986433  3567888998888753

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.85  E-value=1.7e-09  Score=96.67  Aligned_cols=133  Identities=11%  Similarity=0.091  Sum_probs=91.6

Q ss_pred             CEEEEc--CCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCC----------CCCe--EEcceeEEeeCCCeEEEc--
Q 037525            1 VIILVG--SSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPG----------FDNM--WLHSMIESAHDNGAVVFR--   64 (182)
Q Consensus         1 ~V~VVG--~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~----------~~~i--~~~~~v~~~~~~~~v~~~--   64 (182)
                      +|+|||  +|++|+|+|..|++.+++|++++|++ .......+.          ...|  .....++++.++ ++.+.  
T Consensus       530 ~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-~v~~~~~  607 (729)
T 1o94_A          530 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPG-RMEIYNI  607 (729)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTCHHHHHHHHHHTTCEEECSEEEEEEETT-EEEEEET
T ss_pred             eEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccccccccccHHHHHHHHHhCCCEEEcCcEEEEEECC-eEEEEEe
Confidence            589999  99999999999999999999999977 311000000          0123  344567788754 45442  


Q ss_pred             --CC-cE------------------EecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccC
Q 037525           65 --NG-HT------------------VHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPW  123 (182)
Q Consensus        65 --dg-~~------------------~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~  123 (182)
                        ++ +.                  +++|.||+|+|++++.+++..   +..   .+ ..+..   ++ .|++|.+|++.
T Consensus       608 ~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~---l~~---~v-d~~~~---t~-~~~VyAiGD~~  676 (729)
T 1o94_A          608 WGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNE---LKA---RE-SEWAE---ND-IKGIYLIGDAE  676 (729)
T ss_dssp             TCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHH---HHH---TG-GGTGG---GT-CCEEEECGGGT
T ss_pred             cCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHH---Hhh---hc-ccccc---cC-CCCeEEEeCcc
Confidence              33 22                  899999999999998776542   111   11 12222   24 69999999987


Q ss_pred             CcccccHHHHHHHHHHHHHcCCC
Q 037525          124 KVIPFPLCEYQSKWIAGVLSGQI  146 (182)
Q Consensus       124 ~~~~~~~~e~qa~~ia~~l~g~~  146 (182)
                      ....+..+..|++.+|..|.+..
T Consensus       677 ~~~~~~~A~~~G~~aA~~i~~~l  699 (729)
T 1o94_A          677 APRLIADATFTGHRVAREIEEAN  699 (729)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSSC
T ss_pred             chhhHHHHHHHHHHHHHHhhhhc
Confidence            65556778999999999998753

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.85  E-value=3e-09  Score=82.18  Aligned_cols=143  Identities=16%  Similarity=0.084  Sum_probs=85.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC------------------------C----------CCCCCCCCe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT------------------------Y----------EKQPGFDNM   46 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~------------------------~----------~~~~~~~~i   46 (182)
                      +|+|||+|++|++.|..|++...+|++++++.....                        +          +.+...+++
T Consensus         5 dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~gv   84 (232)
T 2cul_A            5 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL   84 (232)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCCc
Confidence            589999999999999999999999999998621000                        0          000111233


Q ss_pred             EE-cceeEEeeC-CC---eEEEcCCcEEecCEEEEecccccCCCCCCCC----------------------CceecC---
Q 037525           47 WL-HSMIESAHD-NG---AVVFRNGHTVHADVILHCTGYKYHFPFLETN----------------------GIVTMD---   96 (182)
Q Consensus        47 ~~-~~~v~~~~~-~~---~v~~~dg~~~~~D~vi~atG~~~~~~~l~~~----------------------~~~~~~---   96 (182)
                      .+ ...++++.. ++   +|.+.+|+++++|.||+|||...........                      .++.+.   
T Consensus        85 ~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~~~~  164 (232)
T 2cul_A           85 HLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFVERE  164 (232)
T ss_dssp             EEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEEEEE
T ss_pred             EEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeEEccc
Confidence            32 346666642 22   3667788889999999999995442110000                      000000   


Q ss_pred             ------CCcccc--cccc---------ccC-CCCCCCEEEEeccCCcccccHHHHHHHHHHHHHcC
Q 037525           97 ------DNRVGP--LYKH---------VFP-PVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSG  144 (182)
Q Consensus        97 ------~~~~~~--ly~~---------~~~-~~~~p~l~~iG~~~~~~~~~~~e~qa~~ia~~l~g  144 (182)
                            .+.+++  -|..         .+. .+ .|++|.+|.+.....+..+-.|++.+|..|..
T Consensus       165 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~-~p~iya~G~~a~~g~~~~~~~~g~~~a~~i~~  229 (232)
T 2cul_A          165 GEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKR-LEGLYAVGLCVREGDYARMSEEGKRLAEHLLH  229 (232)
T ss_dssp             EEEC-----CCEEEEEEEECGGGEETTTTEETT-SBSEEECGGGTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCcCCCCCCccCchhhcccCCCCCccccccc-cccceeeeecccCccHHHHHHHHHHHHHHHHh
Confidence                  000000  0000         111 24 79999999987334677888999999988754

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.74  E-value=1.7e-08  Score=80.58  Aligned_cols=134  Identities=9%  Similarity=0.088  Sum_probs=79.6

Q ss_pred             CEEEEcCCcc-HHHHHHHHhccCCeEEEEeccCCCCC--CCCCCCCC-CeEEcceeEEeeCC----CeEEEcCCcEEecC
Q 037525            1 VIILVGSSAS-AVDICRDLAGVAKEVHLVSRSVADGT--YEKQPGFD-NMWLHSMIESAHDN----GAVVFRNGHTVHAD   72 (182)
Q Consensus         1 ~V~VVG~G~s-g~d~A~~l~~~a~~V~l~~r~~~~~~--~~~~~~~~-~i~~~~~v~~~~~~----~~v~~~dg~~~~~D   72 (182)
                      +++|||||.. +.|+|..+.+.+++|+++.++..+..  .+.+.... .+. ...++++..+    ..+.+.||+++++|
T Consensus       148 ~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~~~~~~~l~~~g~~~~-~~~v~~~~~~~~~~~~v~~~~g~~i~~~  226 (304)
T 4fk1_A          148 PLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELSQTIMDELSNKNIPVI-TESIRTLQGEGGYLKKVEFHSGLRIERA  226 (304)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCCHHHHHHHHTTTCCEE-CSCEEEEESGGGCCCEEEETTSCEECCC
T ss_pred             ceeeecCCCchhhhHHHHHHhCCceEEEEeccccchhhhhhhhhccceeEe-eeeEEEeecCCCeeeeeeccccceeeec
Confidence            4788898876 56777777788889999888654321  00111111 222 2345555432    25888999999999


Q ss_pred             EEEEecccccCCCCCCCCCceecCCC-ccccccccccCCCCCCCEEEEeccCCccc--ccHHHHHHHHHH
Q 037525           73 VILHCTGYKYHFPFLETNGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKVIP--FPLCEYQSKWIA  139 (182)
Q Consensus        73 ~vi~atG~~~~~~~l~~~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~~~--~~~~e~qa~~ia  139 (182)
                      .+|+++|..++.+++.. .++++++. .+ ....++ .++ .|++|.+|++...+.  ...+-.|++.+|
T Consensus       227 ~~vi~~g~~~~~~~~~~-~g~~~~~~G~I-~vd~~~-~Ts-~p~IyA~GDv~~~~~~~~~~A~~~G~~AA  292 (304)
T 4fk1_A          227 GGFIVPTFFRPNQFIEQ-LGCELQSNGTF-VIDDFG-RTS-EKNIYLAGETTTQGPSSLIIAASQGNKAA  292 (304)
T ss_dssp             EEEECCEEECSSCHHHH-TTCCCCTTSSS-CSSTTC-BCS-STTEEECSHHHHTSCCCHHHHHHHHHHHH
T ss_pred             ceeeeeccccCChhhhh-cCeEECCCCCE-EECcCC-ccC-CCCEEEEeccCCCcchHHHHHHHHHHHHH
Confidence            99999888887666544 23444433 22 222222 224 699999999753221  233444444444

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.50  E-value=3.3e-07  Score=71.92  Aligned_cols=88  Identities=16%  Similarity=0.251  Sum_probs=61.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC----CCCCCC-------------------CCCCeEE-cceeEEee
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG----TYEKQP-------------------GFDNMWL-HSMIESAH   56 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~----~~~~~~-------------------~~~~i~~-~~~v~~~~   56 (182)
                      +|+|||+|++|+..|..|++...+|+++.++....    .....+                   .++++.. ...++++.
T Consensus         4 ~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~   83 (297)
T 3fbs_A            4 DVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDAK   83 (297)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESCEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEEEE
Confidence            58999999999999999999988999999754321    000011                   1123333 44666665


Q ss_pred             CC-C--eEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           57 DN-G--AVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        57 ~~-~--~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      .+ +  .+.+.+|+++.+|.||+|||..+..+-++
T Consensus        84 ~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~  118 (297)
T 3fbs_A           84 GSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIA  118 (297)
T ss_dssp             EETTEEEEEETTSCEEEEEEEEECCCCEEECCCCB
T ss_pred             EcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCC
Confidence            32 1  56777888899999999999987655444

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.46  E-value=8.8e-07  Score=73.40  Aligned_cols=88  Identities=11%  Similarity=0.188  Sum_probs=64.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCC---------C-----CCCCC-------CCeE--EcceeEEeeC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTY---------E-----KQPGF-------DNMW--LHSMIESAHD   57 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~---------~-----~~~~~-------~~i~--~~~~v~~~~~   57 (182)
                      ||+|||||++|+..|..|.+...+|+++.+.+...+.         .     .+...       .++.  ....|++++.
T Consensus        11 ~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~id~   90 (385)
T 3klj_A           11 KILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSIDP   90 (385)
T ss_dssp             SEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEEET
T ss_pred             CEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEEEC
Confidence            6999999999999999997777789999887643210         0     00000       1333  3457788864


Q ss_pred             -CCeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           58 -NGAVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        58 -~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                       ++.|++.+|+++.+|.+|+|||.++..+-++
T Consensus        91 ~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~  122 (385)
T 3klj_A           91 NNKLVTLKSGEKIKYEKLIIASGSIANKIKVP  122 (385)
T ss_dssp             TTTEEEETTSCEEECSEEEECCCEEECCCCCT
T ss_pred             CCCEEEECCCCEEECCEEEEecCCCcCCCCCC
Confidence             3478899999999999999999988755444

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.42  E-value=2.3e-06  Score=71.68  Aligned_cols=95  Identities=13%  Similarity=0.131  Sum_probs=59.0

Q ss_pred             eEEcceeEEeeCCCeEEEcC--C--cEEecCEEEEecccccCCCCCCCC-CceecCCCccccccccccCCCCCCCEEEEe
Q 037525           46 MWLHSMIESAHDNGAVVFRN--G--HTVHADVILHCTGYKYHFPFLETN-GIVTMDDNRVGPLYKHVFPPVLAPWLSFVG  120 (182)
Q Consensus        46 i~~~~~v~~~~~~~~v~~~d--g--~~~~~D~vi~atG~~~~~~~l~~~-~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG  120 (182)
                      +..+..|++++++ ++++.+  |  +++++|.+||++|.+++ +++... ..+..+.+........+-+++ .||+|.+|
T Consensus       217 ~~~~~~v~~v~~~-~~~~~~~~g~~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~-~~~IfAiG  293 (430)
T 3hyw_A          217 WIANVAVKAIEPD-KVIYEDLNGNTHEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPT-YKNIFGVG  293 (430)
T ss_dssp             EECSCEEEEECSS-EEEEECTTSCEEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSS-STTEEECS
T ss_pred             EEeCceEEEEeCC-ceEEEeeCCCceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCC-CCCEEEec
Confidence            4456788888764 777764  3  36799999999999986 443321 112212222112222333355 69999999


Q ss_pred             ccCCc-------------ccccHHHHHHHHHHHHHc
Q 037525          121 LPWKV-------------IPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus       121 ~~~~~-------------~~~~~~e~qa~~ia~~l~  143 (182)
                      ++...             .+.+.+..||+.+|+.|.
T Consensus       294 D~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~  329 (430)
T 3hyw_A          294 VVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIV  329 (430)
T ss_dssp             TTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             cEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHH
Confidence            98631             123478899999988774

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.36  E-value=9.6e-07  Score=73.99  Aligned_cols=84  Identities=18%  Similarity=0.230  Sum_probs=60.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccCCCCCC--------CC---------CC---CCCCeE-EcceeEEeeC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSVADGTY--------EK---------QP---GFDNMW-LHSMIESAHD   57 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~~~~~~--------~~---------~~---~~~~i~-~~~~v~~~~~   57 (182)
                      +|+|||+|..|+..|..|++..  .+|+++.+++.+.+.        ..         +.   ...++. ....+++|+.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~Id~   83 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESIDP   83 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEEET
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEEEC
Confidence            5999999999999999999854  479999987642110        00         00   011344 2456778874


Q ss_pred             -CCeEEEcCCcEEecCEEEEecccccCC
Q 037525           58 -NGAVVFRNGHTVHADVILHCTGYKYHF   84 (182)
Q Consensus        58 -~~~v~~~dg~~~~~D~vi~atG~~~~~   84 (182)
                       ++.|+++||+++++|.+|+|||.++.+
T Consensus        84 ~~~~V~~~~g~~i~YD~LViAtG~~~~~  111 (430)
T 3hyw_A           84 DANTVTTQSGKKIEYDYLVIATGPKLVF  111 (430)
T ss_dssp             TTTEEEETTCCEEECSEEEECCCCEEEC
T ss_pred             CCCEEEECCCCEEECCEEEEeCCCCccC
Confidence             357999999999999999999987653

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.35  E-value=6.9e-06  Score=67.68  Aligned_cols=135  Identities=13%  Similarity=0.023  Sum_probs=79.4

Q ss_pred             cHHHHHHHHhc------cCCeEEEEeccCCCCCC-----------CCCCCCCCeE--EcceeEEeeC---CCeEEEcCCc
Q 037525           10 SAVDICRDLAG------VAKEVHLVSRSVADGTY-----------EKQPGFDNMW--LHSMIESAHD---NGAVVFRNGH   67 (182)
Q Consensus        10 sg~d~A~~l~~------~a~~V~l~~r~~~~~~~-----------~~~~~~~~i~--~~~~v~~~~~---~~~v~~~dg~   67 (182)
                      .+.|++.+++.      ...+|+++.+.+.+...           ........+.  ....+..+..   ...+.+.||+
T Consensus       164 a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~  243 (401)
T 3vrd_B          164 GPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSFGE  243 (401)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEETTSC
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcCCCc
Confidence            35555555543      23579999877654210           0011112233  3344555432   2368889999


Q ss_pred             EEecCEEEEecccccCCCCCCCCCceecCCCccccccccc-cCCCCCCCEEEEeccCCc----ccccHHHHHHHHHHHHH
Q 037525           68 TVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHV-FPPVLAPWLSFVGLPWKV----IPFPLCEYQSKWIAGVL  142 (182)
Q Consensus        68 ~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~-~~~~~~p~l~~iG~~~~~----~~~~~~e~qa~~ia~~l  142 (182)
                      ++++|.+++++|.+++ +++... .+..+.+.+ ....++ .+++ .||+|.+|++...    .+...+..||+.+|+.|
T Consensus       244 ~i~~D~vi~~~g~~~~-~~~~~~-gl~~~~G~i-~VD~~tl~~t~-~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni  319 (401)
T 3vrd_B          244 TFKAAVINLIPPQRAG-KIAQSA-SLTNDSGWC-PVDIRTFESSL-QPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAV  319 (401)
T ss_dssp             EEECSEEEECCCEEEC-HHHHHT-TCCCTTSSB-CBCTTTCBBSS-STTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHH
T ss_pred             EEEeeEEEEecCcCCc-hhHhhc-cccccCCCE-EECCCcceecC-CCCEEEecccccCCCCCchHHHHHHHHHHHHHHH
Confidence            9999999999999886 444332 232233334 344443 2345 7999999997532    23457788888888765


Q ss_pred             ----cCCCCC
Q 037525          143 ----SGQIVL  148 (182)
Q Consensus       143 ----~g~~~l  148 (182)
                          .|+...
T Consensus       320 ~~~l~G~~~~  329 (401)
T 3vrd_B          320 VALLKGEEPG  329 (401)
T ss_dssp             HHHHHTCCCC
T ss_pred             HHHhcCCCCC
Confidence                465443

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.34  E-value=1.2e-07  Score=81.05  Aligned_cols=121  Identities=14%  Similarity=0.162  Sum_probs=76.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCCCCCeEEcceeEEeeCCC---eEEEcCCcEEecCEEEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNG---AVVFRNGHTVHADVILHC   77 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~~~~i~~~~~v~~~~~~~---~v~~~dg~~~~~D~vi~a   77 (182)
                      +|+|||+|++|+|  ..+.+..-+                     +.....|+++.+++   .+.+.||+++++|.||+|
T Consensus       252 ~vvViGgG~~gle--~~l~~~GV~---------------------v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a  308 (493)
T 1y56_A          252 KVAVTGSKADEVI--QELERWGID---------------------YVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFA  308 (493)
T ss_dssp             EEEEESTTHHHHH--HHHHHHTCE---------------------EEECSSEEEEECSSSCCEEEETTCCEEECSEEEEC
T ss_pred             EEEEECCCHHHHH--HHHHhCCcE---------------------EEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEEC
Confidence            4789999999998  222222211                     22233444554321   467788889999999999


Q ss_pred             cccccCCCCCCCCC-ceecC-CCcccc-ccccccCCCCCCCEEEEeccCCcccccHHHHHHHHHHHHHcCCCCC
Q 037525           78 TGYKYHFPFLETNG-IVTMD-DNRVGP-LYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVL  148 (182)
Q Consensus        78 tG~~~~~~~l~~~~-~~~~~-~~~~~~-ly~~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~ia~~l~g~~~l  148 (182)
                      +|+.|+.+++...+ .+.++ .+.+ + ....+ . + .|++|.+|++........+..|++.++..+.+...+
T Consensus       309 ~G~~p~~~l~~~~g~~~~~~~~g~i-~~vd~~~-~-s-~~~vya~GD~~~~~~~~~A~~~g~~aa~~i~~~lg~  378 (493)
T 1y56_A          309 DGRRPDINPITQAGGKLRFRRGYYS-PVLDEYH-R-I-KDGIYVAGSAVSIKPHYANYLEGKLVGAYILKEFGY  378 (493)
T ss_dssp             CCEEECCHHHHHTTCCEEEETTEEE-ECCCTTS-E-E-ETTEEECSTTTCCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCcCcCchHHHhcCCCccccCCcee-ecccccc-C-c-CCCEEEEeccCCccCHHHHHHHHHHHHHHHHHHcCC
Confidence            99999976654321 11111 2221 1 11111 1 3 589999999876555677889999999988776544

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.33  E-value=9.9e-07  Score=73.96  Aligned_cols=88  Identities=17%  Similarity=0.255  Sum_probs=63.0

Q ss_pred             CEEEEcCCccHHHHHHHHhc---cCCeEEEEeccCCCCCC--------CCCC------------CCCCeE-EcceeEEee
Q 037525            1 VIILVGSSASAVDICRDLAG---VAKEVHLVSRSVADGTY--------EKQP------------GFDNMW-LHSMIESAH   56 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~---~a~~V~l~~r~~~~~~~--------~~~~------------~~~~i~-~~~~v~~~~   56 (182)
                      +|+|||||.+|+..|..|++   ...+|+++.+++.+...        ....            ...++. ....+++++
T Consensus         6 ~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v~~id   85 (437)
T 3sx6_A            6 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQID   85 (437)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCEEEEE
T ss_pred             cEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEEEEEE
Confidence            58999999999999999999   67799999987643210        0000            001232 235677776


Q ss_pred             CC-CeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           57 DN-GAVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        57 ~~-~~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      .+ +.|.+.+|+++.+|.+|+|||.++..+-++
T Consensus        86 ~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ip  118 (437)
T 3sx6_A           86 AEAQNITLADGNTVHYDYLMIATGPKLAFENVP  118 (437)
T ss_dssp             TTTTEEEETTSCEEECSEEEECCCCEECGGGST
T ss_pred             cCCCEEEECCCCEEECCEEEECCCCCcCcccCC
Confidence            43 478888998899999999999988755443

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.31  E-value=1.3e-06  Score=72.44  Aligned_cols=88  Identities=10%  Similarity=0.149  Sum_probs=60.0

Q ss_pred             CEEEEcCCccHHHHHHHHhc---cCCeEEEEeccCCCCC----CCCCC---CC-------------CCeEE-cceeEEee
Q 037525            1 VIILVGSSASAVDICRDLAG---VAKEVHLVSRSVADGT----YEKQP---GF-------------DNMWL-HSMIESAH   56 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~---~a~~V~l~~r~~~~~~----~~~~~---~~-------------~~i~~-~~~v~~~~   56 (182)
                      +|+|||||.+|+..|..|++   ...+|+++.+++.+..    .....   ..             .++.. ...+++++
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i~   82 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKID   82 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEECEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEeeEEEEe
Confidence            58999999999999999999   7789999998764310    00000   00             11221 23566665


Q ss_pred             CC-CeEEEcCCcE----EecCEEEEecccccCCCCCC
Q 037525           57 DN-GAVVFRNGHT----VHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        57 ~~-~~v~~~dg~~----~~~D~vi~atG~~~~~~~l~   88 (182)
                      .+ ..|++.+|+.    +++|.+|+|||.++..+-++
T Consensus        83 ~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ip  119 (409)
T 3h8l_A           83 AKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVK  119 (409)
T ss_dssp             TTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSB
T ss_pred             CCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCC
Confidence            42 3688887753    78999999999987754343

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.25  E-value=4.2e-06  Score=69.40  Aligned_cols=88  Identities=10%  Similarity=0.168  Sum_probs=61.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC--eEEEEeccCCCCCC----------CCC-CC----C-------CCeEEc-ceeEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSVADGTY----------EKQ-PG----F-------DNMWLH-SMIESA   55 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~~~~~~----------~~~-~~----~-------~~i~~~-~~v~~~   55 (182)
                      +|+|||+|.+|+-.|..|++...  +|+++.+.+...+.          ... +.    .       .++... ..++++
T Consensus         3 ~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~i   82 (404)
T 3fg2_P            3 TVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELISDRMVSI   82 (404)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEECCCEEEE
T ss_pred             CEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEEEEEEEE
Confidence            69999999999999999999776  89999987632110          000 00    0       122221 556666


Q ss_pred             eCC-CeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           56 HDN-GAVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        56 ~~~-~~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      +.+ +.+.+.+|+.+.+|.+|+|||..+..+-++
T Consensus        83 d~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i~  116 (404)
T 3fg2_P           83 DREGRKLLLASGTAIEYGHLVLATGARNRMLDVP  116 (404)
T ss_dssp             ETTTTEEEESSSCEEECSEEEECCCEEECCCCST
T ss_pred             ECCCCEEEECCCCEEECCEEEEeeCCCccCCCCC
Confidence            642 478888998999999999999977654443

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.25  E-value=3.3e-06  Score=66.87  Aligned_cols=87  Identities=15%  Similarity=0.121  Sum_probs=59.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc--CCCCCC---CCCCCC--------------------CCeEEcceeEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS--VADGTY---EKQPGF--------------------DNMWLHSMIESA   55 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~--~~~~~~---~~~~~~--------------------~~i~~~~~v~~~   55 (182)
                      +|+|||+|++|+-.|..|++...+|+++.+.  ..+...   ...+..                    -++.. ..+.++
T Consensus        17 ~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i   95 (323)
T 3f8d_A           17 DVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEKI   95 (323)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEEE
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEEE
Confidence            4899999999999999999998899999986  111100   001111                    12333 556666


Q ss_pred             eCC-C--eEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           56 HDN-G--AVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        56 ~~~-~--~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      ..+ +  .+.+.+|..+.+|.+|+|||..+..+-++
T Consensus        96 ~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~  131 (323)
T 3f8d_A           96 ENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVP  131 (323)
T ss_dssp             EEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCT
T ss_pred             EecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCC
Confidence            532 1  36667778899999999999987655443

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.23  E-value=4.2e-06  Score=69.55  Aligned_cols=87  Identities=15%  Similarity=0.087  Sum_probs=61.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCe--EEEEeccCCCCCC------CCCCCC----------------CCeE--EcceeEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKE--VHLVSRSVADGTY------EKQPGF----------------DNMW--LHSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~--V~l~~r~~~~~~~------~~~~~~----------------~~i~--~~~~v~~   54 (182)
                      +|+|||+|.+|+-.|..|++...+  |+++.+.+...+.      ..+...                .++.  ....+..
T Consensus        11 ~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   90 (415)
T 3lxd_A           11 DVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEVVS   90 (415)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCEEE
T ss_pred             cEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEEEE
Confidence            489999999999999999997765  9999887543210      001100                1232  3346677


Q ss_pred             eeCC-CeEEEcCCcEEecCEEEEecccccCCCCC
Q 037525           55 AHDN-GAVVFRNGHTVHADVILHCTGYKYHFPFL   87 (182)
Q Consensus        55 ~~~~-~~v~~~dg~~~~~D~vi~atG~~~~~~~l   87 (182)
                      ++.+ ..+.+.+|+.+.+|.+|+|||..+..+.+
T Consensus        91 id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i  124 (415)
T 3lxd_A           91 LDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSC  124 (415)
T ss_dssp             EETTTTEEEETTSCEEEEEEEEECCCEECCCCBT
T ss_pred             EECCCCEEEECCCCEEEeeEEEEccCCccCCCCC
Confidence            7643 46888899899999999999988765433

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.21  E-value=2.3e-06  Score=70.56  Aligned_cols=88  Identities=15%  Similarity=0.205  Sum_probs=62.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccCCCCCC--------CCCC------CC-----CCeE-EcceeEEeeCC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSVADGTY--------EKQP------GF-----DNMW-LHSMIESAHDN   58 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~~~~~~--------~~~~------~~-----~~i~-~~~~v~~~~~~   58 (182)
                      ||+|||+|+.|+-.|..|.+..  .+|+++.+++.+...        ...+      ..     .++. +...++.++.+
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~~v~~id~~   83 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGIDPD   83 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECSCEEEEETT
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEeEEEEEEcc
Confidence            6999999999999999998754  379999887643110        0000      00     1233 34567778743


Q ss_pred             -CeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           59 -GAVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        59 -~~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                       +.+++.+|+++++|.+|+|||.++.++-++
T Consensus        84 ~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~  114 (401)
T 3vrd_B           84 KKLVKTAGGAEFAYDRCVVAPGIDLLYDKIE  114 (401)
T ss_dssp             TTEEEETTSCEEECSEEEECCCEEECGGGSB
T ss_pred             CcEEEecccceeecceeeeccCCccccCCcc
Confidence             478889999999999999999988755443

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.19  E-value=5.9e-06  Score=68.71  Aligned_cols=88  Identities=14%  Similarity=0.148  Sum_probs=61.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCe--EEEEeccCCCCCC---------------CCCCCC------CCe--EEcceeEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKE--VHLVSRSVADGTY---------------EKQPGF------DNM--WLHSMIESA   55 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~--V~l~~r~~~~~~~---------------~~~~~~------~~i--~~~~~v~~~   55 (182)
                      +|+|||+|++|+..|..|++...+  |+++.+.+...+.               +.+...      .++  .....++.+
T Consensus         4 ~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i   83 (410)
T 3ef6_A            4 HVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTAL   83 (410)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEEE
T ss_pred             CEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEEE
Confidence            589999999999999999997765  9999887543210               000000      122  234467777


Q ss_pred             eCC-CeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           56 HDN-GAVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        56 ~~~-~~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      +.+ ..|.+.+|+++.+|.+|+|||..+..+-++
T Consensus        84 d~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~ip  117 (410)
T 3ef6_A           84 DVQTRTISLDDGTTLSADAIVIATGSRARTMALP  117 (410)
T ss_dssp             ETTTTEEEETTSCEEECSEEEECCCEEECCCCCT
T ss_pred             ECCCCEEEECCCCEEECCEEEEccCCcccCCCCC
Confidence            642 478888998999999999999987654333

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.19  E-value=8.1e-06  Score=64.84  Aligned_cols=88  Identities=13%  Similarity=0.198  Sum_probs=57.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC----CCCCCC-------------------CCCCeEE-cceeEEee
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG----TYEKQP-------------------GFDNMWL-HSMIESAH   56 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~----~~~~~~-------------------~~~~i~~-~~~v~~~~   56 (182)
                      +|+|||+|+.|+..|..+++...+|+++.+...--    .+..++                   .+..+.. ...+..+.
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT   87 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence            48999999999999999999999999998753210    000000                   1112221 12222222


Q ss_pred             --CC--CeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           57 --DN--GAVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        57 --~~--~~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                        ++  ..+.+.||+++.+|.||+|||.++..+-++
T Consensus        88 ~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~  123 (304)
T 4fk1_A           88 KQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIP  123 (304)
T ss_dssp             ECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCT
T ss_pred             ecCCCcEEEEECCCCEEEeCEEEEccCCcccccccc
Confidence              11  146778899999999999999988755444

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.17  E-value=1.2e-05  Score=63.92  Aligned_cols=89  Identities=13%  Similarity=0.209  Sum_probs=57.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC---CC---CCCCCCCCC--------------------eEEcceeEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD---GT---YEKQPGFDN--------------------MWLHSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~---~~---~~~~~~~~~--------------------i~~~~~v~~   54 (182)
                      +|+|||+|+.|+..|..|++...+|+++.+...-   ..   ....|.+..                    +........
T Consensus         8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV   87 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence            4899999999999999999999999999875321   00   011222110                    111111111


Q ss_pred             ee-CCCeEEEcCCcEEecCEEEEecccccCCCCCCC
Q 037525           55 AH-DNGAVVFRNGHTVHADVILHCTGYKYHFPFLET   89 (182)
Q Consensus        55 ~~-~~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~   89 (182)
                      .. ....+...+++++.+|.+|+|||.++..+-++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG  123 (312)
T 4gcm_A           88 EDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPG  123 (312)
T ss_dssp             EECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTT
T ss_pred             eeeecceeeccCCeEEEeceeEEcccCccCcCCCCC
Confidence            11 222455567888999999999999887655543

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.14  E-value=6.7e-06  Score=68.90  Aligned_cols=88  Identities=16%  Similarity=0.251  Sum_probs=61.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC--eEEEEeccCCCCC-----CC-CCCC----------------CCCeEE--cceeEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSVADGT-----YE-KQPG----------------FDNMWL--HSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~~~~~-----~~-~~~~----------------~~~i~~--~~~v~~   54 (182)
                      +|+|||+|+.|+..|..|++...  +|+++.+.+...+     .. .+..                ..++..  ...|+.
T Consensus         6 ~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~   85 (431)
T 1q1r_A            6 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQVTA   85 (431)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCEEE
T ss_pred             cEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEEEE
Confidence            48999999999999999999776  7999987653211     00 0100                012332  345666


Q ss_pred             eeC-CCeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           55 AHD-NGAVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        55 ~~~-~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      ++. +..|.+.+|+++.+|.+|+|||.++..+.++
T Consensus        86 i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i~  120 (431)
T 1q1r_A           86 INRDRQQVILSDGRALDYDRLVLATGGRPRPLPVA  120 (431)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCEEECCCGGG
T ss_pred             EECCCCEEEECCCCEEECCEEEEcCCCCccCCCCC
Confidence            653 2468888898899999999999988755443

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.14  E-value=5.9e-06  Score=65.72  Aligned_cols=86  Identities=15%  Similarity=0.120  Sum_probs=58.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC------CC----CCCCCC--------------------CCeEEcc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG------TY----EKQPGF--------------------DNMWLHS   50 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~------~~----~~~~~~--------------------~~i~~~~   50 (182)
                      +|+|||+|++|+..|..|++...+|+++.+++..-      .+    ...+..                    ..+..+.
T Consensus         9 ~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (332)
T 3lzw_A            9 DITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLEQ   88 (332)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEccC
Confidence            58999999999999999999888999999875321      00    001111                    1223346


Q ss_pred             eeEEeeCC-C---eEEEcCCcEEecCEEEEeccc---ccCCCCC
Q 037525           51 MIESAHDN-G---AVVFRNGHTVHADVILHCTGY---KYHFPFL   87 (182)
Q Consensus        51 ~v~~~~~~-~---~v~~~dg~~~~~D~vi~atG~---~~~~~~l   87 (182)
                      .|.++..+ +   .|.+.+|+ +.+|.||+|||.   .+..+-+
T Consensus        89 ~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~  131 (332)
T 3lzw_A           89 AVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLEL  131 (332)
T ss_dssp             CEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCC
T ss_pred             EEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCC
Confidence            67766532 2   46666775 889999999999   5554433

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.11  E-value=1.2e-05  Score=66.02  Aligned_cols=86  Identities=14%  Similarity=0.205  Sum_probs=59.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCC---------CC-----C-CCC------CCeEE--cceeEEeeC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTY---------EK-----Q-PGF------DNMWL--HSMIESAHD   57 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~---------~~-----~-~~~------~~i~~--~~~v~~~~~   57 (182)
                      +|+|||+|+.|+..|..|++.. +|+++.+++.....         ..     + ...      .++..  ...++.++.
T Consensus        10 ~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~id~   88 (367)
T 1xhc_A           10 KVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDR   88 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEET
T ss_pred             cEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEEEEC
Confidence            5899999999999999999988 99999987642110         00     0 000      12332  234666654


Q ss_pred             C-CeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           58 N-GAVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        58 ~-~~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      + ..|. .+|+++++|.+|+|||.++..+-++
T Consensus        89 ~~~~V~-~~g~~~~~d~lViATGs~p~~p~i~  119 (367)
T 1xhc_A           89 GRKVVI-TEKGEVPYDTLVLATGARAREPQIK  119 (367)
T ss_dssp             TTTEEE-ESSCEEECSEEEECCCEEECCCCSB
T ss_pred             CCCEEE-ECCcEEECCEEEECCCCCCCCCCCC
Confidence            3 2455 7788899999999999988755444

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.09  E-value=1.7e-05  Score=66.48  Aligned_cols=32  Identities=22%  Similarity=0.320  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC--eEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~   32 (182)
                      +|+|||+|++|+-.|..|++.+.  +|+++.+++
T Consensus         8 dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~   41 (447)
T 2gv8_A            8 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   41 (447)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             EEEEECccHHHHHHHHHHHhcCCCCCeEEEecCC
Confidence            58999999999999999999888  999999864

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.08  E-value=1.2e-05  Score=64.29  Aligned_cols=81  Identities=15%  Similarity=0.149  Sum_probs=55.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC------CC----CCCCCC--------------------CCeEEcc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG------TY----EKQPGF--------------------DNMWLHS   50 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~------~~----~~~~~~--------------------~~i~~~~   50 (182)
                      +|+|||+|++|+..|..|++...+|+++.+++.+.      .+    ...+..                    ..+..+.
T Consensus         7 ~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   86 (335)
T 2zbw_A            7 DVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLGE   86 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEESC
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCC
Confidence            48999999999999999999888999999875321      00    001111                    0233345


Q ss_pred             eeEEeeCC-C--eEEEcCCcEEecCEEEEecccc
Q 037525           51 MIESAHDN-G--AVVFRNGHTVHADVILHCTGYK   81 (182)
Q Consensus        51 ~v~~~~~~-~--~v~~~dg~~~~~D~vi~atG~~   81 (182)
                      .|.++..+ +  .|.+.+|+.+.+|.||+|||..
T Consensus        87 ~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           87 RAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEEEEEECCTTS
T ss_pred             EEEEEEECCCEEEEEECCCCEEEeCEEEECCCCC
Confidence            66666532 1  2556678788999999999984

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.06  E-value=2.3e-05  Score=62.54  Aligned_cols=88  Identities=10%  Similarity=0.117  Sum_probs=58.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC---CCC---CCCCCCC-------------------CCeEE-cceeEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA---DGT---YEKQPGF-------------------DNMWL-HSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~---~~~---~~~~~~~-------------------~~i~~-~~~v~~   54 (182)
                      +|+|||+|++|+..|..|++...+|+++.++..   +..   ....+..                   .++.. ...+..
T Consensus        10 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v~~   89 (325)
T 2q7v_A           10 DVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEMDEVQG   89 (325)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEECCEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEeeeEEE
Confidence            489999999999999999998889999998731   000   0011111                   01211 235555


Q ss_pred             eeCC---C---eEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           55 AHDN---G---AVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        55 ~~~~---~---~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      +..+   +   .|.+.+|+.+.+|.||+|||..+..+-++
T Consensus        90 i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~  129 (325)
T 2q7v_A           90 VQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIP  129 (325)
T ss_dssp             EEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCT
T ss_pred             EEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCC
Confidence            5422   2   46677888899999999999987654333

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.06  E-value=9.4e-06  Score=64.69  Aligned_cols=87  Identities=21%  Similarity=0.231  Sum_probs=57.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC----CC----CC---CCCCCCCC-------------------Ce--EE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV----AD----GT---YEKQPGFD-------------------NM--WL   48 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~----~~----~~---~~~~~~~~-------------------~i--~~   48 (182)
                      +|+|||+|++|+..|..|++...+|+++.+.+    ..    ..   ....|..+                   ++  ..
T Consensus        24 ~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~  103 (338)
T 3itj_A           24 KVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEIIT  103 (338)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEEEE
Confidence            58999999999999999999988999999854    10    00   00011111                   12  22


Q ss_pred             cceeEEeeCC-CeEEE-----cCCcEEecCEEEEecccccCCCCCC
Q 037525           49 HSMIESAHDN-GAVVF-----RNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        49 ~~~v~~~~~~-~~v~~-----~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      .. +.++..+ +.+.+     .++..+.+|.+|+|||..+..+-++
T Consensus       104 ~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~  148 (338)
T 3itj_A          104 ET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLP  148 (338)
T ss_dssp             SC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCT
T ss_pred             eE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCC
Confidence            23 5566532 34444     3566789999999999987655443

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.04  E-value=1.9e-05  Score=63.18  Aligned_cols=33  Identities=9%  Similarity=0.144  Sum_probs=30.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|..|++...+|+++.+++.
T Consensus         5 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~   37 (357)
T 4a9w_A            5 DVVVIGGGQSGLSAGYFLRRSGLSYVILDAEAS   37 (357)
T ss_dssp             EEEEECCSHHHHHHHHHHHHSSCCEEEECCSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            589999999999999999999889999998753

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.04  E-value=1.3e-05  Score=69.25  Aligned_cols=80  Identities=14%  Similarity=0.183  Sum_probs=56.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-------CC--------------------------CCCCC-----
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-------TY--------------------------EKQPG-----   42 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-------~~--------------------------~~~~~-----   42 (182)
                      +|+|||+|.+|+-.|..|.+...+|+++.+++..-       .+                          ...+.     
T Consensus        11 dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei~   90 (545)
T 3uox_A           11 DAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEML   90 (545)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHHH
T ss_pred             CEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHHH
Confidence            48999999999999999999888999999875320       00                          00000     


Q ss_pred             ------------CCCeEEcceeEEee--CC-C--eEEEcCCcEEecCEEEEeccc
Q 037525           43 ------------FDNMWLHSMIESAH--DN-G--AVVFRNGHTVHADVILHCTGY   80 (182)
Q Consensus        43 ------------~~~i~~~~~v~~~~--~~-~--~v~~~dg~~~~~D~vi~atG~   80 (182)
                                  ..++..+..|.++.  ++ +  .|.+.+|+++.+|.||+|||.
T Consensus        91 ~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~  145 (545)
T 3uox_A           91 RYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGP  145 (545)
T ss_dssp             HHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCS
T ss_pred             HHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCC
Confidence                        01344455666654  21 1  577788988999999999995

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.04  E-value=1.8e-05  Score=66.53  Aligned_cols=88  Identities=11%  Similarity=0.198  Sum_probs=59.0

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCC---------CCCCC-----C--------CCe--EEcceeEE
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTY---------EKQPG-----F--------DNM--WLHSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~---------~~~~~-----~--------~~i--~~~~~v~~   54 (182)
                      +|+|||+|++|+-.|..|++.  ..+|+++.+++...+.         .....     .        .++  .....+.+
T Consensus         4 ~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~~   83 (452)
T 3oc4_A            4 KIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVVA   83 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEEE
Confidence            589999999999999999997  7799999987643210         00000     0        122  23456666


Q ss_pred             eeCC-CeEEEc---CCcEEecCEEEEecccccCCCCCC
Q 037525           55 AHDN-GAVVFR---NGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        55 ~~~~-~~v~~~---dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      ++.+ +.+.+.   ++..+.+|.+|+|||.++..+-++
T Consensus        84 id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~  121 (452)
T 3oc4_A           84 MDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIR  121 (452)
T ss_dssp             EETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCB
T ss_pred             EECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCC
Confidence            6532 355553   455678999999999988655443

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.01  E-value=1.7e-05  Score=68.65  Aligned_cols=87  Identities=15%  Similarity=0.179  Sum_probs=59.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-------CCC-----------------------C---CCC-----
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-------TYE-----------------------K---QPG-----   42 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-------~~~-----------------------~---~~~-----   42 (182)
                      +|+|||+|.+|+-.|..|++...+|+++.+++..-       .+.                       .   .+.     
T Consensus        23 dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei~  102 (549)
T 4ap3_A           23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEIL  102 (549)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHHH
T ss_pred             CEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHHH
Confidence            48999999999999999999888999999864210       000                       0   000     


Q ss_pred             ---------C---CCeEEcceeEEeeC-CC----eEEEcCCcEEecCEEEEeccc--ccCCCCC
Q 037525           43 ---------F---DNMWLHSMIESAHD-NG----AVVFRNGHTVHADVILHCTGY--KYHFPFL   87 (182)
Q Consensus        43 ---------~---~~i~~~~~v~~~~~-~~----~v~~~dg~~~~~D~vi~atG~--~~~~~~l   87 (182)
                               +   .++..+..|+++.- ++    .|.+.+|+++.+|.||+|||.  .+..+-+
T Consensus       103 ~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~i  166 (549)
T 4ap3_A          103 AYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAF  166 (549)
T ss_dssp             HHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCC
T ss_pred             HHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCC
Confidence                     0   13445566666641 22    577788988999999999994  4444433

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.01  E-value=1.2e-05  Score=68.92  Aligned_cols=88  Identities=11%  Similarity=0.084  Sum_probs=58.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC----C----CCC--------------CCCCCeEE-cceeEEeeC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT----Y----EKQ--------------PGFDNMWL-HSMIESAHD   57 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~----~----~~~--------------~~~~~i~~-~~~v~~~~~   57 (182)
                      ||+|||+|..|+.+|..|.+...+|+|+.+++.+.+    +    ..+              ....++.. ...+++|+.
T Consensus        44 rVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~~v~~ID~  123 (502)
T 4g6h_A           44 NVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAEATSINP  123 (502)
T ss_dssp             EEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEEEEEEEEG
T ss_pred             CEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEEEEEEEEh
Confidence            599999999999999999987779999998753211    0    111              01113332 245566653


Q ss_pred             -CCeEEEc--------------------CCcEEecCEEEEecccccCCCCCC
Q 037525           58 -NGAVVFR--------------------NGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        58 -~~~v~~~--------------------dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                       .+.|++.                    ++.++++|.+|+|||..++++-++
T Consensus       124 ~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ip  175 (502)
T 4g6h_A          124 DRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIP  175 (502)
T ss_dssp             GGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCT
T ss_pred             hhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCcc
Confidence             2345543                    355789999999999998865444

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.00  E-value=3.9e-05  Score=63.72  Aligned_cols=87  Identities=13%  Similarity=0.116  Sum_probs=60.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC--eEEEEeccCCCCCC-----C-----C------CCC--CCCeE--EcceeEEeeCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSVADGTY-----E-----K------QPG--FDNMW--LHSMIESAHDN   58 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~~~~~~-----~-----~------~~~--~~~i~--~~~~v~~~~~~   58 (182)
                      +|+|||+|++|+..|..|++...  +|+++.+.+...+.     .     .      +..  ..++.  ....++.++.+
T Consensus         9 ~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~   88 (408)
T 2gqw_A            9 PVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQ   88 (408)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEEETT
T ss_pred             cEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEEECC
Confidence            58999999999999999999765  59999987532110     0     0      000  11232  33456777642


Q ss_pred             -CeEEEcCCcEEecCEEEEecccccCCCCC
Q 037525           59 -GAVVFRNGHTVHADVILHCTGYKYHFPFL   87 (182)
Q Consensus        59 -~~v~~~dg~~~~~D~vi~atG~~~~~~~l   87 (182)
                       ..|.+.+|+++.+|.+|+|||.++..+.+
T Consensus        89 ~~~v~~~~g~~~~~d~lviAtG~~~~~~~i  118 (408)
T 2gqw_A           89 AHTVALSDGRTLPYGTLVLATGAAPRALPT  118 (408)
T ss_dssp             TTEEEETTSCEEECSEEEECCCEEECCCGG
T ss_pred             CCEEEECCCCEEECCEEEECCCCCCCCCCc
Confidence             46888889889999999999998865443

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.99  E-value=2.8e-05  Score=61.45  Aligned_cols=89  Identities=17%  Similarity=0.194  Sum_probs=56.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC------CC-----CCCCCCC-------------------CeE-Ec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG------TY-----EKQPGFD-------------------NMW-LH   49 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~------~~-----~~~~~~~-------------------~i~-~~   49 (182)
                      +|+|||+|++|+..|..+++...+|+++.+...-.      .+     ...|.++                   .+. ..
T Consensus         6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~   85 (314)
T 4a5l_A            6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIIT   85 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEE
Confidence            48999999999999999999999999998754210      00     0111111                   011 11


Q ss_pred             ceeEEeeC--C-CeEEEcCCcEEecCEEEEecccccCCCCCCC
Q 037525           50 SMIESAHD--N-GAVVFRNGHTVHADVILHCTGYKYHFPFLET   89 (182)
Q Consensus        50 ~~v~~~~~--~-~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~   89 (182)
                      ..+.....  + ..+...++.++.+|.||+|||.++..+.++.
T Consensus        86 ~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ipG  128 (314)
T 4a5l_A           86 ETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPG  128 (314)
T ss_dssp             CCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCTT
T ss_pred             eEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCCc
Confidence            22222221  1 1345567778899999999999887555553

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.99  E-value=1.5e-05  Score=66.95  Aligned_cols=88  Identities=13%  Similarity=0.134  Sum_probs=57.4

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCC-----C---------CCCC--------CCCeE--EcceeEE
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTY-----E---------KQPG--------FDNMW--LHSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~-----~---------~~~~--------~~~i~--~~~~v~~   54 (182)
                      +|+|||+|++|+..|..|++.  ..+|+++.+++.....     .         .+..        ..++.  ....+..
T Consensus         5 ~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v~~   84 (449)
T 3kd9_A            5 KVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEVIE   84 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEEEE
T ss_pred             cEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEEEE
Confidence            589999999999999999997  6689999987632110     0         0000        01222  2345666


Q ss_pred             eeCCC-eEEEcCCc-EEecCEEEEecccccCCCCCC
Q 037525           55 AHDNG-AVVFRNGH-TVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        55 ~~~~~-~v~~~dg~-~~~~D~vi~atG~~~~~~~l~   88 (182)
                      ++.+. .+...+|+ .+.+|.+|+|||.++..+-++
T Consensus        85 i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~  120 (449)
T 3kd9_A           85 VDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIE  120 (449)
T ss_dssp             ECSSEEEEECSSSEEEEECSEEEECCCEEECCCSCB
T ss_pred             EecCCCEEEECCceEEEEcCEEEECCCCCCCCCCCC
Confidence            65432 34555563 678999999999987655443

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.99  E-value=2.3e-05  Score=61.96  Aligned_cols=87  Identities=11%  Similarity=0.142  Sum_probs=57.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEeccCC---CCC---CCCCCCC-------------------CCeEE-cceeE
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSVA---DGT---YEKQPGF-------------------DNMWL-HSMIE   53 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~~---~~~---~~~~~~~-------------------~~i~~-~~~v~   53 (182)
                      +|+|||+|++|+-.|..|++... +|+++.+...   +..   ....+..                   .++.. ...+.
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~v~   82 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMTAVQ   82 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEECSCEE
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEEEEEE
Confidence            58999999999999999999888 9999988531   000   0011111                   01221 13455


Q ss_pred             EeeC-CC--eEEEcCCcEEecCEEEEecccccCCCCC
Q 037525           54 SAHD-NG--AVVFRNGHTVHADVILHCTGYKYHFPFL   87 (182)
Q Consensus        54 ~~~~-~~--~v~~~dg~~~~~D~vi~atG~~~~~~~l   87 (182)
                      .+.. ++  .+.+.+|+.+.+|.||+|||..+..+-+
T Consensus        83 ~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~  119 (311)
T 2q0l_A           83 RVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGI  119 (311)
T ss_dssp             EEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCC
T ss_pred             EEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCC
Confidence            5542 23  4566788889999999999987765433

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.98  E-value=2.3e-05  Score=66.17  Aligned_cols=88  Identities=15%  Similarity=0.198  Sum_probs=56.9

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCC-----C----------CCC-------CC-------CCCe--E
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGT-----Y----------EKQ-------PG-------FDNM--W   47 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~-----~----------~~~-------~~-------~~~i--~   47 (182)
                      +|+|||+|++|+-.|..|++.  ..+|+++.+++...+     +          ..+       ..       ..++  .
T Consensus         5 ~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~   84 (472)
T 3iwa_A            5 HVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVEAL   84 (472)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CEEE
T ss_pred             cEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcEEE
Confidence            589999999999999999997  779999998764210     0          001       00       0112  2


Q ss_pred             EcceeEEeeC-CCeEEEcC---Cc--EEecCEEEEecccccCCCCCC
Q 037525           48 LHSMIESAHD-NGAVVFRN---GH--TVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        48 ~~~~v~~~~~-~~~v~~~d---g~--~~~~D~vi~atG~~~~~~~l~   88 (182)
                      ....+.+++. ++.+.+.+   |+  .+.+|.+|+|||.++..+-++
T Consensus        85 ~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~  131 (472)
T 3iwa_A           85 VETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVE  131 (472)
T ss_dssp             CSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCT
T ss_pred             ECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCC
Confidence            3455666653 23566654   66  678999999999987655443

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.97  E-value=2.2e-05  Score=63.62  Aligned_cols=82  Identities=11%  Similarity=0.163  Sum_probs=56.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC------CCC----CCCCC-------------------C-CeEEcc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG------TYE----KQPGF-------------------D-NMWLHS   50 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~------~~~----~~~~~-------------------~-~i~~~~   50 (182)
                      +|+|||+|++|+-.|..|++...+|+++.+.+..-      .+.    ..+..                   + .+..+.
T Consensus        16 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   95 (360)
T 3ab1_A           16 DLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVLNE   95 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEECSC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEcCC
Confidence            48999999999999999999888999999865320      000    01111                   0 223345


Q ss_pred             eeEEeeCC-C---eEEEcCCcEEecCEEEEeccccc
Q 037525           51 MIESAHDN-G---AVVFRNGHTVHADVILHCTGYKY   82 (182)
Q Consensus        51 ~v~~~~~~-~---~v~~~dg~~~~~D~vi~atG~~~   82 (182)
                      .|.++..+ +   .|.+.+|+.+.+|.||+|||..+
T Consensus        96 ~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           96 TVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             CEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCS
T ss_pred             EEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCc
Confidence            66666532 2   46667888899999999999854

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.96  E-value=1.1e-05  Score=68.10  Aligned_cols=33  Identities=12%  Similarity=0.152  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+-.|..|++.+.+|+++.+++.
T Consensus         6 DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~   38 (466)
T 3l8k_A            6 DVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGE   38 (466)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECTTSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            489999999999999999999999999996553

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.95  E-value=2.3e-05  Score=62.00  Aligned_cols=87  Identities=14%  Similarity=0.036  Sum_probs=57.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC--CCCC-C--CCCCC------------------CCCeE--EcceeEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV--ADGT-Y--EKQPG------------------FDNMW--LHSMIESA   55 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~--~~~~-~--~~~~~------------------~~~i~--~~~~v~~~   55 (182)
                      +|+|||+|++|+..|..|++...+|+++.++.  .+.. .  ..++.                  ..++.  ....+..+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   82 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence            58999999999999999999888999986532  1100 0  00000                  01222  23466666


Q ss_pred             eCC------CeEEEcCCcEEecCEEEEecccccCCCCC
Q 037525           56 HDN------GAVVFRNGHTVHADVILHCTGYKYHFPFL   87 (182)
Q Consensus        56 ~~~------~~v~~~dg~~~~~D~vi~atG~~~~~~~l   87 (182)
                      ..+      ..|.+.+|+++.+|.+|+|||..+..+-+
T Consensus        83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~  120 (310)
T 1fl2_A           83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNV  120 (310)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCC
T ss_pred             EecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCC
Confidence            421      14667788889999999999998764433

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.91  E-value=3.8e-05  Score=66.11  Aligned_cols=88  Identities=15%  Similarity=0.143  Sum_probs=59.8

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCC---------CCCC-------CC-------CCeE--EcceeE
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTY---------EKQP-------GF-------DNMW--LHSMIE   53 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~---------~~~~-------~~-------~~i~--~~~~v~   53 (182)
                      +|+|||+|++|+..|..|++.  ..+|+++.+++...+.         ....       .+       .++.  .+..|.
T Consensus         3 ~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   82 (565)
T 3ntd_A            3 KILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEVV   82 (565)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEEE
T ss_pred             cEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEEE
Confidence            589999999999999999987  6789999987653210         0000       00       1222  345677


Q ss_pred             EeeCC-CeEEEcC---Cc--EEecCEEEEecccccCCCCCC
Q 037525           54 SAHDN-GAVVFRN---GH--TVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        54 ~~~~~-~~v~~~d---g~--~~~~D~vi~atG~~~~~~~l~   88 (182)
                      +++.+ +.+.+.+   |+  ++.+|.+|+|||.++..+-++
T Consensus        83 ~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ip  123 (565)
T 3ntd_A           83 AIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIP  123 (565)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCT
T ss_pred             EEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCC
Confidence            77643 3566653   55  578999999999987655443

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.90  E-value=3.4e-05  Score=66.67  Aligned_cols=80  Identities=13%  Similarity=0.171  Sum_probs=56.4

Q ss_pred             CEEEEcCCccHHHHHHHHh-ccCCeEEEEeccCCCC-------CCC----------------------CCC---------
Q 037525            1 VIILVGSSASAVDICRDLA-GVAKEVHLVSRSVADG-------TYE----------------------KQP---------   41 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~-~~a~~V~l~~r~~~~~-------~~~----------------------~~~---------   41 (182)
                      +|+|||+|.+|+-.|..|+ +.+.+|+++.+++..-       .+.                      ...         
T Consensus        10 dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~ei   89 (540)
T 3gwf_A           10 DAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPEI   89 (540)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHHH
Confidence            4899999999999999999 8888999999864320       000                      000         


Q ss_pred             ---------CC---CCeEEcceeEEeeC-CC----eEEEcCCcEEecCEEEEeccc
Q 037525           42 ---------GF---DNMWLHSMIESAHD-NG----AVVFRNGHTVHADVILHCTGY   80 (182)
Q Consensus        42 ---------~~---~~i~~~~~v~~~~~-~~----~v~~~dg~~~~~D~vi~atG~   80 (182)
                               .+   ..+..+..|+++.. ++    .|.+.+|+++.+|.||+|||.
T Consensus        90 ~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~  145 (540)
T 3gwf_A           90 LEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGL  145 (540)
T ss_dssp             HHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcc
Confidence                     00   13445566666642 12    577788988999999999996

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.90  E-value=2.7e-05  Score=66.38  Aligned_cols=84  Identities=15%  Similarity=0.175  Sum_probs=57.9

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCC----------CCC----------------------C-----
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTY----------EKQ----------------------P-----   41 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~----------~~~----------------------~-----   41 (182)
                      +|+|||+|+.|+..|..|.+.  ..+|+++.+.+...+.          ...                      +     
T Consensus        13 ~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (493)
T 1m6i_A           13 PFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYV   92 (493)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGSB
T ss_pred             CEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchHhhc
Confidence            489999999999999999875  6789999987532100          000                      0     


Q ss_pred             C--------CCCeE--EcceeEEeeC-CCeEEEcCCcEEecCEEEEecccccCC
Q 037525           42 G--------FDNMW--LHSMIESAHD-NGAVVFRNGHTVHADVILHCTGYKYHF   84 (182)
Q Consensus        42 ~--------~~~i~--~~~~v~~~~~-~~~v~~~dg~~~~~D~vi~atG~~~~~   84 (182)
                      .        ..++.  ....+.+++. ...|.+.||+++.+|.+|+|||.++..
T Consensus        93 ~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~  146 (493)
T 1m6i_A           93 SAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRS  146 (493)
T ss_dssp             CTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             chhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCC
Confidence            0        01222  2345666653 247888899889999999999988753

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.89  E-value=4.4e-05  Score=62.41  Aligned_cols=33  Identities=15%  Similarity=0.124  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|..|++.+.+|+++++++.
T Consensus        13 dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~   45 (379)
T 3alj_A           13 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE   45 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            489999999999999999999999999998654

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.88  E-value=4.1e-05  Score=64.21  Aligned_cols=32  Identities=25%  Similarity=0.241  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-----CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-----KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-----~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-.|..|++.+     .+|+++.+.+
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~   68 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQG   68 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCS
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCC
Confidence            5899999999999999999987     7899998876

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.86  E-value=5.5e-05  Score=63.97  Aligned_cols=32  Identities=16%  Similarity=0.262  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhc---cCCe---EEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG---VAKE---VHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~---~a~~---V~l~~r~~   32 (182)
                      +|+|||+|++|+..|..|++   .+.+   |+++.+++
T Consensus         4 ~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~   41 (464)
T 2xve_A            4 RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQA   41 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSS
T ss_pred             cEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCC
Confidence            58999999999999999998   7777   99999865

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.86  E-value=5.1e-05  Score=59.77  Aligned_cols=88  Identities=14%  Similarity=0.189  Sum_probs=54.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEE-EeccCC---CC---CCCCCCCC-------------------CCeEE-cceeE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHL-VSRSVA---DG---TYEKQPGF-------------------DNMWL-HSMIE   53 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l-~~r~~~---~~---~~~~~~~~-------------------~~i~~-~~~v~   53 (182)
                      +|+|||+|++|+..|..|++...+|++ +.+...   +.   .....|..                   ..+.. ...+.
T Consensus         6 ~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~   85 (315)
T 3r9u_A            6 DVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMVGVE   85 (315)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSCEEEECSSSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEEEEE
Confidence            589999999999999999998889999 887321   10   00011111                   01221 12444


Q ss_pred             Ee-eCC-CeEE--EcCCcEEecCEEEEecccccCCCCCC
Q 037525           54 SA-HDN-GAVV--FRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        54 ~~-~~~-~~v~--~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      ++ .++ +.+.  +.++.++.+|.+|+|||..+..+-++
T Consensus        86 ~i~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~  124 (315)
T 3r9u_A           86 QILKNSDGSFTIKLEGGKTELAKAVIVCTGSAPKKAGFK  124 (315)
T ss_dssp             EEEECTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCB
T ss_pred             EEecCCCCcEEEEEecCCEEEeCEEEEeeCCCCCCCCCC
Confidence            55 220 2344  44333778999999999987655443

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.83  E-value=6.5e-05  Score=65.18  Aligned_cols=88  Identities=17%  Similarity=0.201  Sum_probs=59.9

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCC---------CCCC-------CC-------CC--eEEcceeE
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTY---------EKQP-------GF-------DN--MWLHSMIE   53 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~---------~~~~-------~~-------~~--i~~~~~v~   53 (182)
                      +|+|||+|++|+-.|..|++.  ..+|+++.+++...+.         ..+.       .+       .+  +.....+.
T Consensus        38 ~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~~V~  117 (588)
T 3ics_A           38 KIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLSEVV  117 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSEEEE
T ss_pred             CEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECCEEE
Confidence            589999999999999999997  6799999987653210         0000       00       12  23345666


Q ss_pred             EeeCC-CeEEEc---CCc--EEecCEEEEecccccCCCCCC
Q 037525           54 SAHDN-GAVVFR---NGH--TVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        54 ~~~~~-~~v~~~---dg~--~~~~D~vi~atG~~~~~~~l~   88 (182)
                      +++.+ +.+.+.   +|+  .+.+|.+|+|||..+..+-++
T Consensus       118 ~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~  158 (588)
T 3ics_A          118 KINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIP  158 (588)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCT
T ss_pred             EEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCC
Confidence            76532 356664   466  568999999999987655443

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.78  E-value=0.00011  Score=61.51  Aligned_cols=88  Identities=14%  Similarity=0.152  Sum_probs=59.2

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCC---------CCCCC------C-------CCeE--EcceeEE
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTY---------EKQPG------F-------DNMW--LHSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~---------~~~~~------~-------~~i~--~~~~v~~   54 (182)
                      +|+|||+|++|+..|..|++.  ..+|+++.+++.....         .....      .       .++.  ....+..
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~   81 (447)
T 1nhp_A            2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA   81 (447)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEEE
Confidence            589999999999999999997  7799999987642110         00000      0       0222  3445555


Q ss_pred             eeC-CCeEEEcC---CcE--EecCEEEEecccccCCCCCC
Q 037525           55 AHD-NGAVVFRN---GHT--VHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        55 ~~~-~~~v~~~d---g~~--~~~D~vi~atG~~~~~~~l~   88 (182)
                      +.. ++.|.+.+   |+.  +.+|.+|+|||..+..+-++
T Consensus        82 i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~  121 (447)
T 1nhp_A           82 IQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIP  121 (447)
T ss_dssp             EETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCST
T ss_pred             EeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCC
Confidence            643 34677754   653  78999999999988755444

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.77  E-value=7.7e-05  Score=64.01  Aligned_cols=87  Identities=14%  Similarity=0.043  Sum_probs=57.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC--CCC---CCCCCC------------------CCCeE--EcceeEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA--DGT---YEKQPG------------------FDNMW--LHSMIESA   55 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~--~~~---~~~~~~------------------~~~i~--~~~~v~~~   55 (182)
                      +|+|||||++|+..|..|++.+.+|.++.++..  +..   ...++.                  ..++.  ....+.++
T Consensus       214 dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i  293 (521)
T 1hyu_A          214 DVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSASKL  293 (521)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEE
Confidence            489999999999999999998889999975321  110   000000                  01222  23466666


Q ss_pred             eCC------CeEEEcCCcEEecCEEEEecccccCCCCC
Q 037525           56 HDN------GAVVFRNGHTVHADVILHCTGYKYHFPFL   87 (182)
Q Consensus        56 ~~~------~~v~~~dg~~~~~D~vi~atG~~~~~~~l   87 (182)
                      ..+      ..|.+.+|+.+.+|.||+|||..+..+-+
T Consensus       294 ~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~i  331 (521)
T 1hyu_A          294 VPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNV  331 (521)
T ss_dssp             ECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCC
T ss_pred             EeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCC
Confidence            421      24677888889999999999987754433

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.77  E-value=0.00019  Score=60.17  Aligned_cols=89  Identities=13%  Similarity=0.124  Sum_probs=57.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC--eEEEEeccCCCCCC---------CCCCC-------C-------CCe--EEcceeE
Q 037525            1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSVADGTY---------EKQPG-------F-------DNM--WLHSMIE   53 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~~~~~~---------~~~~~-------~-------~~i--~~~~~v~   53 (182)
                      ||+|||+|+.|+..|..|++...  +|+++.+.+.....         .....       .       .++  .....+.
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   81 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI   81 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence            79999999999999999998663  69999886532110         00000       0       022  2345666


Q ss_pred             EeeCC-CeEEEcC-----CcEEecCEEEEecccccCCCCCCC
Q 037525           54 SAHDN-GAVVFRN-----GHTVHADVILHCTGYKYHFPFLET   89 (182)
Q Consensus        54 ~~~~~-~~v~~~d-----g~~~~~D~vi~atG~~~~~~~l~~   89 (182)
                      .++.+ +.+.+.+     +..+.+|.+|+|||.++..+-++.
T Consensus        82 ~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~g  123 (437)
T 4eqs_A           82 AINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFES  123 (437)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCCC
T ss_pred             EEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccccccC
Confidence            77643 3444432     224689999999999987654443

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.76  E-value=3.9e-05  Score=61.20  Aligned_cols=87  Identities=17%  Similarity=0.167  Sum_probs=55.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEec----cCCC----CCC---CCCCCCC-------------------CeEE-c
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSR----SVAD----GTY---EKQPGFD-------------------NMWL-H   49 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r----~~~~----~~~---~~~~~~~-------------------~i~~-~   49 (182)
                      +|+|||+|++|+..|..|++...+|+++.+    ....    ...   ...+.++                   .+.+ .
T Consensus        10 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~   89 (333)
T 1vdc_A           10 RLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIFT   89 (333)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEEE
Confidence            489999999999999999998889999987    2111    000   0111110                   1221 1


Q ss_pred             ceeEEeeCC-C--eEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           50 SMIESAHDN-G--AVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        50 ~~v~~~~~~-~--~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      ..+..+..+ +  .|.+ +|.++.+|.||+|||..+..+-++
T Consensus        90 ~~v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~~~  130 (333)
T 1vdc_A           90 ETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSFV  130 (333)
T ss_dssp             CCCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCCCB
T ss_pred             eEEEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCCCC
Confidence            225555432 2  3444 777889999999999987654333

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.74  E-value=0.00017  Score=58.84  Aligned_cols=33  Identities=15%  Similarity=0.238  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      ||+|||+|++|.=+|..|++.+-+|++++|.+.
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            699999999999999999999999999988653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.72  E-value=0.00012  Score=58.03  Aligned_cols=87  Identities=15%  Similarity=0.100  Sum_probs=56.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC---CCC---CCCCCCC-------------------CCeEE-cceeEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA---DGT---YEKQPGF-------------------DNMWL-HSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~---~~~---~~~~~~~-------------------~~i~~-~~~v~~   54 (182)
                      +|+|||+|++|+-.|..|++...+|+++.+...   +..   ....|.+                   .++.. ...+..
T Consensus         7 ~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   86 (320)
T 1trb_A            7 KLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINK   86 (320)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCCEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEeeeeE
Confidence            589999999999999999998889999986421   000   0011111                   01221 123555


Q ss_pred             eeCC-CeEE-EcCCcEEecCEEEEecccccCCCCC
Q 037525           55 AHDN-GAVV-FRNGHTVHADVILHCTGYKYHFPFL   87 (182)
Q Consensus        55 ~~~~-~~v~-~~dg~~~~~D~vi~atG~~~~~~~l   87 (182)
                      +..+ +.+. +.+|..+.+|.+|+|||..+..+.+
T Consensus        87 i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~  121 (320)
T 1trb_A           87 VDLQNRPFRLNGDNGEYTCDALIIATGASARYLGL  121 (320)
T ss_dssp             EECSSSSEEEEESSCEEEEEEEEECCCEEECCCCC
T ss_pred             EEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCC
Confidence            5432 2333 5678788999999999998765433

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.72  E-value=0.0002  Score=61.40  Aligned_cols=32  Identities=19%  Similarity=0.114  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-.|..|++...+|+++.+++
T Consensus        45 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~   76 (523)
T 1mo9_A           45 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   76 (523)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            58999999999999999999888999999876

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=97.71  E-value=5.3e-05  Score=64.66  Aligned_cols=33  Identities=21%  Similarity=0.351  Sum_probs=30.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|+..|..|++.+.+|+++.+++.
T Consensus        94 dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~  126 (497)
T 2bry_A           94 KCLVVGAGPCGLRAAVELALLGARVVLVEKRIK  126 (497)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCSS
T ss_pred             CEEEECccHHHHHHHHHHHHCCCeEEEEEeccc
Confidence            489999999999999999999999999998754

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.69  E-value=0.0001  Score=63.44  Aligned_cols=32  Identities=19%  Similarity=0.326  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+.+|.++.+++
T Consensus        18 dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~   49 (542)
T 1w4x_A           18 DVLVVGAGFSGLYALYRLRELGRSVHVIETAG   49 (542)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            48999999999999999999888999999865

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.68  E-value=0.0001  Score=61.79  Aligned_cols=88  Identities=13%  Similarity=0.130  Sum_probs=59.0

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCC---------CCC----CC-----C------CCe--EEccee
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTY---------EKQ----PG-----F------DNM--WLHSMI   52 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~---------~~~----~~-----~------~~i--~~~~~v   52 (182)
                      +|+|||+|++|+-.|..|++.  ..+|+++.+++.....         ...    +.     .      .++  .....+
T Consensus         2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   81 (452)
T 2cdu_A            2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV   81 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCEE
Confidence            589999999999999999997  8899999987632100         000    00     0      122  233456


Q ss_pred             EEeeC-CCeEEEcC-----CcEEecCEEEEecccccCCCCCC
Q 037525           53 ESAHD-NGAVVFRN-----GHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        53 ~~~~~-~~~v~~~d-----g~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      ..++. ++.+.+.+     +.++.+|.+|+|||.++..+-++
T Consensus        82 ~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~  123 (452)
T 2cdu_A           82 TNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIP  123 (452)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCT
T ss_pred             EEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCC
Confidence            66642 24677754     45689999999999887755443

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.68  E-value=0.00011  Score=58.98  Aligned_cols=87  Identities=21%  Similarity=0.185  Sum_probs=56.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC---CCCC---CCCCCC-------------------CCeEE-cceeEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA---DGTY---EKQPGF-------------------DNMWL-HSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~---~~~~---~~~~~~-------------------~~i~~-~~~v~~   54 (182)
                      +|+|||+|++|+-.|..|++...+|+++.+...   +...   ...|.+                   .++.. ...+..
T Consensus        16 ~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~v~~   95 (335)
T 2a87_A           16 DVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMEDVES   95 (335)
T ss_dssp             EEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCCEEE
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEeeEEE
Confidence            489999999999999999998889999986421   1000   011111                   01221 123455


Q ss_pred             eeCCC--eE-EEcCCcEEecCEEEEecccccCCCCC
Q 037525           55 AHDNG--AV-VFRNGHTVHADVILHCTGYKYHFPFL   87 (182)
Q Consensus        55 ~~~~~--~v-~~~dg~~~~~D~vi~atG~~~~~~~l   87 (182)
                      ++.++  .| .+.+|+++.+|.+|+|||..+..+-+
T Consensus        96 i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i  131 (335)
T 2a87_A           96 VSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQV  131 (335)
T ss_dssp             EECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCC
T ss_pred             EEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCC
Confidence            54322  46 66788889999999999998765433

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.66  E-value=0.00021  Score=58.81  Aligned_cols=33  Identities=27%  Similarity=0.289  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|+-.|..|++.+.+|+++++.+.
T Consensus         7 ~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            7 RIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            489999999999999999999999999998754

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.65  E-value=0.00015  Score=57.58  Aligned_cols=86  Identities=21%  Similarity=0.234  Sum_probs=55.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC---CCC---CCCCCCC------------------CCeEE-cceeEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA---DGT---YEKQPGF------------------DNMWL-HSMIESA   55 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~---~~~---~~~~~~~------------------~~i~~-~~~v~~~   55 (182)
                      +|+|||+|++|+-.|..|++...+|+++.+...   +..   ....+.+                  ..+.. ...+..+
T Consensus        18 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i   97 (319)
T 3cty_A           18 DVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGVEVRSI   97 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEeeEEEE
Confidence            489999999999999999998889999998531   000   0011110                  01221 1345555


Q ss_pred             eC-CC--eEEEcCCcEEecCEEEEecccccCCCCC
Q 037525           56 HD-NG--AVVFRNGHTVHADVILHCTGYKYHFPFL   87 (182)
Q Consensus        56 ~~-~~--~v~~~dg~~~~~D~vi~atG~~~~~~~l   87 (182)
                      .. ++  .|.. +|.++.+|.+|+|||..+..+-+
T Consensus        98 ~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~i  131 (319)
T 3cty_A           98 KKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLGV  131 (319)
T ss_dssp             EEETTEEEEEE-SSSEEEEEEEEECCCEEECCCCC
T ss_pred             EEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCCC
Confidence            42 22  2433 66678999999999987764433

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.64  E-value=6.1e-05  Score=59.52  Aligned_cols=33  Identities=15%  Similarity=0.399  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|..|++. ..+|+++.+.+.
T Consensus        41 dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~   74 (284)
T 1rp0_A           41 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   74 (284)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CEEEECccHHHHHHHHHHHHcCCCeEEEEECCCC
Confidence            489999999999999999996 789999998753

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.64  E-value=0.00016  Score=60.83  Aligned_cols=31  Identities=19%  Similarity=0.347  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|++|+..|..|++...+|+++.++
T Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   36 (467)
T 1zk7_A            6 QVAVIGSGGAAMAAALKAVEQGAQVTLIERG   36 (467)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4899999999999999999998999999986

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.63  E-value=0.00029  Score=57.91  Aligned_cols=32  Identities=13%  Similarity=0.267  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-+|..|++.+.+|++++|.+
T Consensus        28 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   59 (398)
T 2xdo_A           28 NVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN   59 (398)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            48999999999999999999999999999865

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.61  E-value=0.00023  Score=60.25  Aligned_cols=88  Identities=11%  Similarity=0.103  Sum_probs=58.6

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCC---------CCCCC--------------CCCeE--EcceeE
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTY---------EKQPG--------------FDNMW--LHSMIE   53 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~---------~~~~~--------------~~~i~--~~~~v~   53 (182)
                      +|+|||+|+.|+-.|..|++.  ..+|+++.+.+.....         .....              ..++.  ....+.
T Consensus        38 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v~  117 (480)
T 3cgb_A           38 NYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEVT  117 (480)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEEE
Confidence            489999999999999999986  6789999987542110         00000              01232  234556


Q ss_pred             EeeC-CCeEEEcC---Cc--EEecCEEEEecccccCCCCCC
Q 037525           54 SAHD-NGAVVFRN---GH--TVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        54 ~~~~-~~~v~~~d---g~--~~~~D~vi~atG~~~~~~~l~   88 (182)
                      .++. ++.+.+.+   |+  ++.+|.+|+|||..+..+-++
T Consensus       118 ~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~  158 (480)
T 3cgb_A          118 KVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWE  158 (480)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCB
T ss_pred             EEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCC
Confidence            6653 24666653   76  678999999999987655443

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.60  E-value=0.0002  Score=59.00  Aligned_cols=33  Identities=9%  Similarity=0.154  Sum_probs=30.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|+-.|..|++.+.+|++++|.+.
T Consensus        25 dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~   57 (407)
T 3rp8_A           25 KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE   57 (407)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            589999999999999999999999999998754

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.56  E-value=0.00016  Score=60.76  Aligned_cols=32  Identities=13%  Similarity=0.163  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+..|..|++...+|+++.++.
T Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (450)
T 1ges_A            6 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE   37 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC
Confidence            58999999999999999999888999999863

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.55  E-value=0.00015  Score=59.49  Aligned_cols=87  Identities=8%  Similarity=0.104  Sum_probs=55.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC--eEEEEeccCCCCC-----CCCCCCC-----------------CCeEE--cceeEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSVADGT-----YEKQPGF-----------------DNMWL--HSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~~~~~-----~~~~~~~-----------------~~i~~--~~~v~~   54 (182)
                      +|+|||+|++|+-.|..|++...  +|+++.+......     ...++..                 .++..  ...+..
T Consensus         6 dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~   85 (384)
T 2v3a_A            6 PLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRVTG   85 (384)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCCCE
T ss_pred             cEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEEEE
Confidence            58999999999999999999763  5888876542110     0001100                 12222  234455


Q ss_pred             eeC-CCeEEEcCCcEEecCEEEEecccccCCCCCC
Q 037525           55 AHD-NGAVVFRNGHTVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        55 ~~~-~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~   88 (182)
                      ++. +..|.+.+ ..+.+|.+|+|||..+..+-++
T Consensus        86 i~~~~~~v~~~~-~~~~~d~lviAtG~~p~~p~i~  119 (384)
T 2v3a_A           86 IDPGHQRIWIGE-EEVRYRDLVLAWGAEPIRVPVE  119 (384)
T ss_dssp             EEGGGTEEEETT-EEEECSEEEECCCEEECCCCCB
T ss_pred             EECCCCEEEECC-cEEECCEEEEeCCCCcCCCCCC
Confidence            543 23566654 4689999999999988755443

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.55  E-value=0.00053  Score=57.84  Aligned_cols=32  Identities=13%  Similarity=0.246  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-.|..|++...+|+++.+..
T Consensus        22 dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~   53 (478)
T 3dk9_A           22 DYLVIGGGSGGLASARRAAELGARAAVVESHK   53 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            58999999999999999999999999999763

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.51  E-value=0.00025  Score=57.25  Aligned_cols=32  Identities=13%  Similarity=0.380  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~   32 (182)
                      +|+|||+|++|+..|..|++... +|+++.+++
T Consensus         6 ~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            6 KVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            48999999999999999999887 899999864

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.50  E-value=0.00029  Score=59.68  Aligned_cols=31  Identities=19%  Similarity=0.328  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|++|+-.|..|++.+.+|+++.+.
T Consensus        28 DVvVIGgG~aGl~aA~~la~~G~~V~liEk~   58 (484)
T 3o0h_A           28 DLFVIGSGSGGVRAARLAGALGKRVAIAEEY   58 (484)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHhCcCEEEEEeCC
Confidence            4899999999999999999999999999984

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.48  E-value=0.00031  Score=59.26  Aligned_cols=32  Identities=19%  Similarity=0.387  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+..|..|++...+|+++.+..
T Consensus         6 dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (463)
T 2r9z_A            6 DLIAIGGGSGGLAVAEKAAAFGKRVALIESKA   37 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            48999999999999999999888999999863

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.48  E-value=0.00023  Score=61.72  Aligned_cols=32  Identities=19%  Similarity=0.103  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-.|..|++.+.+|.++.+++
T Consensus       109 DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~  140 (549)
T 3nlc_A          109 RPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK  140 (549)
T ss_dssp             CCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEEccC
Confidence            58999999999999999999988999999874

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.45  E-value=0.00022  Score=60.62  Aligned_cols=32  Identities=13%  Similarity=0.279  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-.|..|++.+.+|+++.++.
T Consensus        10 DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A           10 DVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            48999999999999999999999999999864

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.43  E-value=0.00069  Score=56.96  Aligned_cols=31  Identities=10%  Similarity=0.173  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+.|+..|..|++...+|+++.+.
T Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~   37 (458)
T 1lvl_A            7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (458)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEccC
Confidence            5899999999999999999988899999983

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.41  E-value=0.00028  Score=59.42  Aligned_cols=31  Identities=19%  Similarity=0.291  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|++|+-.|..|++.+.+|+++.+.
T Consensus         7 DVvVIGaG~aGl~aA~~la~~G~~V~liEk~   37 (463)
T 4dna_A            7 DLFVIGGGSGGVRSGRLAAALGKKVAIAEEF   37 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4899999999999999999999999999984

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.00065  Score=57.46  Aligned_cols=32  Identities=19%  Similarity=0.281  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+..|..|++...+|+++.++.
T Consensus        13 dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A           13 DYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             CEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            48999999999999999999988999999863

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.35  E-value=0.00016  Score=54.12  Aligned_cols=32  Identities=22%  Similarity=0.467  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-.|..|++.+.+|+++++++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            59999999999999999999999999999764

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.35  E-value=0.00027  Score=59.30  Aligned_cols=32  Identities=13%  Similarity=0.218  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|+.|+..|..|++...+|+++.+++
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~   34 (455)
T 2yqu_A            3 DLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEK   34 (455)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCChhHHHHHHHHHHCCCeEEEEeCCC
Confidence            58999999999999999999988999999874

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.29  E-value=0.0011  Score=56.19  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=30.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+-.|..|++.+.+|+++.+++.
T Consensus        27 dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~   59 (491)
T 3urh_A           27 DLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRST   59 (491)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            599999999999999999999999999998643

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.28  E-value=0.00011  Score=65.56  Aligned_cols=83  Identities=19%  Similarity=0.245  Sum_probs=53.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC----CCCCCCCCCCe-----------EEc----ceeEEeeCCCeE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG----TYEKQPGFDNM-----------WLH----SMIESAHDNGAV   61 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~----~~~~~~~~~~i-----------~~~----~~v~~~~~~~~v   61 (182)
                      +|+|||+|++|+..|..|++...+|+++.+.+..-    ....+|....+           ...    .....+..+..+
T Consensus       391 ~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~~~~v  470 (729)
T 1o94_A          391 SVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPM  470 (729)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEECSCCCC
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEEEeCeEE
Confidence            58999999999999999999999999999875431    01112222111           000    012233222344


Q ss_pred             EEcCCcEEecCEEEEecccccC
Q 037525           62 VFRNGHTVHADVILHCTGYKYH   83 (182)
Q Consensus        62 ~~~dg~~~~~D~vi~atG~~~~   83 (182)
                      .+.++..+.+|.||+|||..+.
T Consensus       471 ~~~~~~~~~~d~vviAtG~~~~  492 (729)
T 1o94_A          471 TADDVLQYGADKVIIATGARWN  492 (729)
T ss_dssp             CHHHHHTSCCSEEEECCCEEEC
T ss_pred             ehhhccccCCCEEEEcCCCCcc
Confidence            4455555789999999999853

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.25  E-value=0.00022  Score=60.19  Aligned_cols=32  Identities=16%  Similarity=0.192  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+..|..|++...+|+++.+++
T Consensus         8 dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            8 DLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            48999999999999999999888999999864

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.23  E-value=0.00052  Score=57.53  Aligned_cols=31  Identities=16%  Similarity=0.277  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+.|+-.|..|++...+|+++.+.
T Consensus         5 dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   35 (455)
T 1ebd_A            5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (455)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            5899999999999999999998899999986

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.22  E-value=0.00041  Score=58.42  Aligned_cols=32  Identities=9%  Similarity=0.137  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+..|..|++...+|+++.+.+
T Consensus         4 dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~   35 (468)
T 2qae_A            4 DVVVIGGGPGGYVASIKAAQLGMKTACVEKRG   35 (468)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            58999999999999999999988999999875

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.21  E-value=0.0003  Score=59.30  Aligned_cols=32  Identities=9%  Similarity=0.113  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-.|..|++...+|+++.+.+
T Consensus         8 dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   39 (474)
T 1zmd_A            8 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNE   39 (474)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            48999999999999999999888999999875

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.21  E-value=0.00053  Score=58.38  Aligned_cols=29  Identities=17%  Similarity=0.366  Sum_probs=27.6

Q ss_pred             CEEEEcCCccHHHHHHHHhc-cCCeEEEEe
Q 037525            1 VIILVGSSASAVDICRDLAG-VAKEVHLVS   29 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~-~a~~V~l~~   29 (182)
                      +|+|||+|+.|+..|..|++ ...+|+++.
T Consensus         9 dvvVIGgG~aGl~aA~~la~~~G~~V~liE   38 (495)
T 2wpf_A            9 DLVVIGAGSGGLEAGWNAATLYGKRVAVVD   38 (495)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CEEEECCChhHHHHHHHHHHhcCCeEEEEe
Confidence            48999999999999999999 889999999

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.18  E-value=0.00033  Score=59.61  Aligned_cols=87  Identities=14%  Similarity=0.149  Sum_probs=54.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC--CC---C---CCCC-------------CCCeEE--cceeEEeeC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG--TY---E---KQPG-------------FDNMWL--HSMIESAHD   57 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~--~~---~---~~~~-------------~~~i~~--~~~v~~~~~   57 (182)
                      +|+|||+|++|+-.|..|++. .+|+++.+.+..-  ..   .   .++.             ..++..  ...+.++..
T Consensus       110 dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~v~~~~~~~v~~i~~  188 (493)
T 1y56_A          110 DVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKLNENTKIYLETSALGVFD  188 (493)
T ss_dssp             SCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTCCTTEEEETTEEECCCEE
T ss_pred             CEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHHhcCCEEEcCCEEEEEEc
Confidence            589999999999999999999 8999999875431  00   0   0000             112322  233333332


Q ss_pred             C-CeEEE---cCCc--EEecCEEEEecccccCCCCCC
Q 037525           58 N-GAVVF---RNGH--TVHADVILHCTGYKYHFPFLE   88 (182)
Q Consensus        58 ~-~~v~~---~dg~--~~~~D~vi~atG~~~~~~~l~   88 (182)
                      + +.+..   .+++  .+.+|.+|+|||..+..+.++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~  225 (493)
T 1y56_A          189 KGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFE  225 (493)
T ss_dssp             CSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCT
T ss_pred             CCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCC
Confidence            2 22322   3454  478999999999987654343

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.17  E-value=0.0022  Score=54.10  Aligned_cols=30  Identities=10%  Similarity=0.204  Sum_probs=28.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r   30 (182)
                      +|+|||+|++|+-.|..|++.+.+|.++.+
T Consensus        11 DvvVIGgG~aGl~aA~~la~~G~~V~liEk   40 (483)
T 3dgh_A           11 DLIVIGGGSAGLACAKEAVLNGARVACLDF   40 (483)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCEEEEEEe
Confidence            489999999999999999999999999984

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.16  E-value=0.00096  Score=57.08  Aligned_cols=31  Identities=16%  Similarity=0.343  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|++|+-.|..|++.+.+|.++.+.
T Consensus        34 DVvVIGgGpaGl~aA~~la~~G~~V~liEk~   64 (519)
T 3qfa_A           34 DLIIIGGGSGGLAAAKEAAQYGKKVMVLDFV   64 (519)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            4899999999999999999999999999974

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.15  E-value=0.00063  Score=57.88  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+..|..|++...+|+++.++.
T Consensus         4 dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            4 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            58999999999999999999888999999874

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.12  E-value=0.0003  Score=59.45  Aligned_cols=77  Identities=16%  Similarity=0.108  Sum_probs=49.1

Q ss_pred             CEEEEcCCccHHHHHHHHhc-c------CCeEEEEeccCCCCC---CCCCCCC----------------CCeEEcceeEE
Q 037525            1 VIILVGSSASAVDICRDLAG-V------AKEVHLVSRSVADGT---YEKQPGF----------------DNMWLHSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~-~------a~~V~l~~r~~~~~~---~~~~~~~----------------~~i~~~~~v~~   54 (182)
                      +|+|||+|++|+..|..|++ .      ..+|+++.+.+..-.   +...|.+                .++.....+. 
T Consensus         5 ~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v~-   83 (456)
T 1lqt_A            5 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVV-   83 (456)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESCC-
T ss_pred             EEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeEE-
Confidence            58999999999999999999 6      778999998753210   0111221                1222211111 


Q ss_pred             eeCCCeEEEcCCcEEecCEEEEecccc
Q 037525           55 AHDNGAVVFRNGHTVHADVILHCTGYK   81 (182)
Q Consensus        55 ~~~~~~v~~~dg~~~~~D~vi~atG~~   81 (182)
                      + + ..|.+.++ .+.+|.||+|||..
T Consensus        84 v-~-~~v~~~~~-~~~~d~lViAtG~~  107 (456)
T 1lqt_A           84 V-G-EHVQPGEL-SERYDAVIYAVGAQ  107 (456)
T ss_dssp             B-T-TTBCHHHH-HHHSSEEEECCCCC
T ss_pred             E-C-CEEEECCC-eEeCCEEEEeeCCC
Confidence            2 1 23444454 36799999999996

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.11  E-value=0.0015  Score=55.37  Aligned_cols=29  Identities=14%  Similarity=0.359  Sum_probs=27.6

Q ss_pred             CEEEEcCCccHHHHHHHHhc-cCCeEEEEe
Q 037525            1 VIILVGSSASAVDICRDLAG-VAKEVHLVS   29 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~-~a~~V~l~~   29 (182)
                      +|+|||+|+.|+..|..|++ .+.+|+++.
T Consensus         5 dvvVIGgG~aGl~aA~~la~~~G~~V~liE   34 (490)
T 1fec_A            5 DLVVIGAGSGGLEAGWNAASLHKKRVAVID   34 (490)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             cEEEECCCHHHHHHHHHHHHHcCCEEEEEe
Confidence            48999999999999999999 888999999

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.11  E-value=0.0006  Score=57.29  Aligned_cols=32  Identities=6%  Similarity=0.134  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-.|..|++...+|+++.+.+
T Consensus         8 dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~   39 (470)
T 1dxl_A            8 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   39 (470)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            58999999999999999999888999999875

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.98  E-value=0.00059  Score=57.80  Aligned_cols=30  Identities=13%  Similarity=0.372  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r   30 (182)
                      +|+|||+|++|+-.|..|++.+.+|.++.+
T Consensus         8 DvvVIG~G~aGl~aA~~la~~G~~V~liEk   37 (488)
T 3dgz_A            8 DLLVIGGGSGGLACAKEAAQLGKKVAVADY   37 (488)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEEe
Confidence            489999999999999999999999999986

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=96.96  E-value=0.00085  Score=56.73  Aligned_cols=32  Identities=16%  Similarity=0.212  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|+.|+-.|..|++...+|+++.+.+
T Consensus         8 dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~   39 (482)
T 1ojt_A            8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (482)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            48999999999999999999988999999854

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.94  E-value=0.0017  Score=56.35  Aligned_cols=30  Identities=10%  Similarity=0.269  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r   30 (182)
                      +|+|||+|++|+..|..|++...+|+++.+
T Consensus       109 dvvVIG~GpAGl~aA~~l~~~g~~v~liE~  138 (598)
T 2x8g_A          109 DLIVIGGGSGGLAAGKEAAKYGAKTAVLDY  138 (598)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             cEEEECCCccHHHHHHHHHhCCCeEEEEec
Confidence            489999999999999999999999999986

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=96.93  E-value=0.0012  Score=55.36  Aligned_cols=31  Identities=10%  Similarity=0.159  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+.|+-.|..|++...+|+++.++
T Consensus         5 dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~   35 (464)
T 2a8x_A            5 DVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK   35 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            4899999999999999999998899999986

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=96.93  E-value=0.00051  Score=58.39  Aligned_cols=32  Identities=13%  Similarity=0.212  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhcc---CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV---AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~---a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-.|..|++.   ..+|+++.+++
T Consensus         4 dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            4 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            489999999999999999998   88999999874

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.75  E-value=0.0021  Score=59.16  Aligned_cols=33  Identities=15%  Similarity=0.344  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|+.|+..|..|++...+|+++.+.+.
T Consensus       130 dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~  162 (965)
T 2gag_A          130 DVLVVGAGPAGLAAAREASRSGARVMLLDERAE  162 (965)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            489999999999999999998889999998653

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.73  E-value=0.00044  Score=63.99  Aligned_cols=33  Identities=15%  Similarity=0.296  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|..|++.+. +|+++.+.+.
T Consensus       189 ~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~  222 (1025)
T 1gte_A          189 KIALLGAGPASISCASFLARLGYSDITIFEKQEY  222 (1025)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             EEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            59999999999999999999887 6999998653

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=96.63  E-value=0.0013  Score=53.10  Aligned_cols=33  Identities=12%  Similarity=0.213  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|.-.|..|++.+.+|++++|++.
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~   38 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE   38 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            489999999999999999999999999998653

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=96.14  E-value=0.0028  Score=53.35  Aligned_cols=32  Identities=13%  Similarity=0.199  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++++++
T Consensus         3 ~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~   34 (501)
T 4dgk_A            3 PTTVIGAGFGGLALAIRLQAAGIPVLLLEQRD   34 (501)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEECCC-
T ss_pred             CEEEECCcHHHHHHHHHHHHCCCcEEEEccCC
Confidence            69999999999999999999999999998754

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=96.13  E-value=0.0088  Score=51.62  Aligned_cols=32  Identities=13%  Similarity=0.212  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|+.|.-.|..+++.+++|.++.+..
T Consensus        44 DviVIG~GpaG~~aA~~aa~~G~kValIE~~~   75 (542)
T 4b1b_A           44 DYVVIGGGPGGMASAKEAAAHGARVLLFDYVK   75 (542)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            38999999999999999999999999998643

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=96.06  E-value=0.0047  Score=51.47  Aligned_cols=33  Identities=12%  Similarity=0.288  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|+-.|..|++.+.+|+++++.+.
T Consensus        29 dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~   61 (417)
T 3v76_A           29 DVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARA   61 (417)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            589999999999999999999999999998653

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=96.00  E-value=0.0044  Score=50.49  Aligned_cols=32  Identities=13%  Similarity=0.238  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-.|..|++.+.+|+++++.+
T Consensus         4 dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   35 (394)
T 1k0i_A            4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (394)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            59999999999999999999988999999865

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=95.99  E-value=0.0045  Score=50.47  Aligned_cols=32  Identities=16%  Similarity=0.305  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-+|..|++.+.+|+++.+..
T Consensus         6 DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~   37 (397)
T 2oln_A            6 DVVVVGGGPVGLATAWQVAERGHRVLVLERHT   37 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            48999999999999999999999999999864

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=95.98  E-value=0.0046  Score=50.73  Aligned_cols=32  Identities=9%  Similarity=0.209  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||++|.-.|..|++.+.+|+++.++.
T Consensus         7 dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            7 DVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            48999999999999999999988999999864

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=95.97  E-value=0.0046  Score=50.43  Aligned_cols=34  Identities=12%  Similarity=0.302  Sum_probs=30.6

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~   34 (182)
                      +|+|||||++|+-.|..|++.  +.+|+++++.+..
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            589999999999999999998  8899999987543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=95.97  E-value=0.0039  Score=51.92  Aligned_cols=32  Identities=16%  Similarity=0.153  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||++|+-.|..|++.+.+|+++.++.
T Consensus        24 ~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           24 RIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             EEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            48999999999999999999999999999875

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=95.95  E-value=0.0046  Score=49.39  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus         6 dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            6 DCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            48999999999999999999999999999874

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=95.92  E-value=0.0051  Score=50.23  Aligned_cols=33  Identities=12%  Similarity=0.161  Sum_probs=30.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+-+|..|++.+.+|+++++++.
T Consensus         8 dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~   40 (399)
T 2x3n_A            8 DVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR   40 (399)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            489999999999999999999889999998653

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=95.91  E-value=0.0063  Score=50.35  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+-.|..|++.+.+|+++++.+.
T Consensus         6 dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~   38 (401)
T 2gqf_A            6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (401)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            589999999999999999999889999998753

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=95.90  E-value=0.0049  Score=49.80  Aligned_cols=32  Identities=19%  Similarity=0.211  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-+|..|++.+.+|+++.+..
T Consensus        19 dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           19 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            48999999999999999999988999999864

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=95.89  E-value=0.006  Score=49.33  Aligned_cols=32  Identities=25%  Similarity=0.488  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-+|..|++.+.+|+++.++.
T Consensus         7 dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            7 EIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            59999999999999999999888999999864

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=95.88  E-value=0.0059  Score=51.02  Aligned_cols=32  Identities=13%  Similarity=0.239  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||++|.-.|..|++.+.+|+++.+.+
T Consensus         8 dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~   39 (453)
T 3atr_A            8 DVLIIGGGFAGSSAAYQLSRRGLKILLVDSKP   39 (453)
T ss_dssp             SEEEECCSHHHHHHHHHHSSSSCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            59999999999999999999988999999865

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=95.88  E-value=0.006  Score=51.46  Aligned_cols=33  Identities=18%  Similarity=0.314  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|..|++.+.+|+++.+.+.
T Consensus       124 ~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~  156 (456)
T 2vdc_G          124 SVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDR  156 (456)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            599999999999999999998889999998754

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=95.87  E-value=0.0059  Score=50.20  Aligned_cols=33  Identities=18%  Similarity=0.246  Sum_probs=30.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCe-EEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKE-VHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~-V~l~~r~~~   33 (182)
                      +|+|||||++|+-.|..|++.+.+ |+++.+.+.
T Consensus         6 dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   39 (410)
T 3c96_A            6 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   39 (410)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence            489999999999999999999888 999998754

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=95.79  E-value=0.0061  Score=49.30  Aligned_cols=32  Identities=22%  Similarity=0.198  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-+|..|++.+.+|+++.+..
T Consensus         5 dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~   36 (389)
T 2gf3_A            5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (389)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            48999999999999999999988999998764

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=95.78  E-value=0.0046  Score=49.79  Aligned_cols=32  Identities=13%  Similarity=0.162  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-+|..|++.+.+|+++.++.
T Consensus         4 dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~   35 (372)
T 2uzz_A            4 DLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM   35 (372)
T ss_dssp             EEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            48999999999999999999988999999864

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=95.76  E-value=0.0067  Score=49.77  Aligned_cols=32  Identities=16%  Similarity=0.258  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++++++
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (425)
T 3ka7_A            2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLP   33 (425)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCceEEEeCCC
Confidence            58999999999999999999999999999864

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=95.74  E-value=0.0074  Score=49.67  Aligned_cols=32  Identities=19%  Similarity=0.219  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++++++
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA   33 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            58999999999999999999999999999864

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=95.74  E-value=0.0063  Score=51.13  Aligned_cols=32  Identities=9%  Similarity=0.312  Sum_probs=28.6

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~   32 (182)
                      +|+|||||.||+-.|..|++. +.+|+++++++
T Consensus        12 DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~   44 (513)
T 4gde_A           12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE   44 (513)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCCSCEEEEESSS
T ss_pred             CEEEECCcHHHHHHHHHHHhhCCCCEEEEECCC
Confidence            489999999999999999984 78999998765

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=95.69  E-value=0.0068  Score=49.89  Aligned_cols=32  Identities=31%  Similarity=0.415  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++++++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~   34 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE   34 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            58999999999999999999999999998753

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=95.69  E-value=0.006  Score=49.60  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhc-cC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG-VA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~-~a-~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-+|..|++ .+ .+|+++.+..
T Consensus        23 dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           23 DAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            48999999999999999999 88 8999999864

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=95.67  E-value=0.0068  Score=48.49  Aligned_cols=32  Identities=9%  Similarity=0.065  Sum_probs=28.8

Q ss_pred             CEEEEcCCccHHHHHHHHhc---cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG---VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~---~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++   .+.+|++++++.
T Consensus         3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            58999999999999999999   777899998753

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=95.66  E-value=0.0086  Score=48.23  Aligned_cols=32  Identities=22%  Similarity=0.368  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-+|.+|++.+.+|+++.+..
T Consensus         8 dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            8 RVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            48999999999999999999989999999753

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=95.61  E-value=0.0091  Score=49.93  Aligned_cols=32  Identities=16%  Similarity=0.193  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||..|++.|..+++.+.+|.++.+++
T Consensus         3 dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            3 RVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            58999999999999999999999999999765

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=95.60  E-value=0.0091  Score=47.61  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhc--cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG--VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~--~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-.|..|++  .+.+|+++.+++
T Consensus        67 DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~  100 (326)
T 3fpz_A           67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV  100 (326)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            59999999999999999974  477899999865

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=95.59  E-value=0.0094  Score=49.81  Aligned_cols=32  Identities=19%  Similarity=0.251  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++.+.+
T Consensus        28 dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~   59 (447)
T 2i0z_A           28 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   59 (447)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            58999999999999999999888999999865

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=95.56  E-value=0.011  Score=48.68  Aligned_cols=33  Identities=12%  Similarity=0.245  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++.+ .+|+++++++.
T Consensus         8 ~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~   41 (424)
T 2b9w_A            8 RIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDH   41 (424)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence            6999999999999999999988 89999987653

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=95.55  E-value=0.0078  Score=50.65  Aligned_cols=32  Identities=22%  Similarity=0.409  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+..|..|++.+.+|+++.+++
T Consensus        35 ~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~   66 (498)
T 2iid_A           35 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   66 (498)
T ss_dssp             EEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence            48999999999999999999999999998764

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=95.52  E-value=0.01  Score=51.16  Aligned_cols=33  Identities=15%  Similarity=0.281  Sum_probs=30.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++.+.+|.++.+.+.
T Consensus       128 DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~  160 (571)
T 1y0p_A          128 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPV  160 (571)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            599999999999999999999889999998653

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=95.51  E-value=0.011  Score=48.86  Aligned_cols=32  Identities=16%  Similarity=0.216  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+. +|+++.+..
T Consensus         8 dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~   40 (438)
T 3dje_A            8 SLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP   40 (438)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            59999999999999999999988 899998864

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=95.49  E-value=0.052  Score=46.13  Aligned_cols=20  Identities=20%  Similarity=0.300  Sum_probs=18.1

Q ss_pred             CEEEEcCCccHHHHHHHHhc
Q 037525            1 VIILVGSSASAVDICRDLAG   20 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~   20 (182)
                      +|+|||+|+||+-+|..|.+
T Consensus        41 Dvi~IGaGp~gLa~A~~L~~   60 (501)
T 4b63_A           41 DLLCVGFGPASLAIAIALHD   60 (501)
T ss_dssp             EEEEECCSHHHHHHHHHHHH
T ss_pred             cEEEEcccHHHHHHHHHHHh
Confidence            38999999999999998875

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=95.44  E-value=0.0095  Score=50.82  Aligned_cols=32  Identities=22%  Similarity=0.259  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||++|+-+|..|++.+.+|+++.+.+
T Consensus         7 dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~   38 (535)
T 3ihg_A            7 DVLVVGAGLGGLSTAMFLARQGVRVLVVERRP   38 (535)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            48999999999999999999999999999875

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=95.44  E-value=0.011  Score=49.33  Aligned_cols=32  Identities=22%  Similarity=0.319  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC--eEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~   32 (182)
                      +|+|||||.+|+-.|..|++...  +|+++++++
T Consensus         4 dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~   37 (477)
T 3nks_A            4 TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE   37 (477)
T ss_dssp             EEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSS
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            58999999999999999999888  999998754

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=95.42  E-value=0.012  Score=49.21  Aligned_cols=33  Identities=15%  Similarity=0.177  Sum_probs=30.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+=.|..|++.+++|+++++++.
T Consensus        13 dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~   45 (453)
T 2bcg_G           13 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDH   45 (453)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            589999999999999999999999999998764

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=95.42  E-value=0.012  Score=50.13  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=30.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+=+|..|++.+.+|.++++.+.
T Consensus        13 dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~   45 (500)
T 2qa1_A           13 AVIVVGAGPAGMMLAGELRLAGVEVVVLERLVE   45 (500)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            599999999999999999999999999998653

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=95.41  E-value=0.014  Score=48.00  Aligned_cols=33  Identities=30%  Similarity=0.453  Sum_probs=30.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++.+++.
T Consensus         5 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~   37 (384)
T 2bi7_A            5 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   37 (384)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            589999999999999999998889999998654

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=95.40  E-value=0.0098  Score=52.59  Aligned_cols=82  Identities=16%  Similarity=0.200  Sum_probs=51.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC----CCCCCCCCCeE-----E-----c-ceeEEeeCCCeEEEcC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT----YEKQPGFDNMW-----L-----H-SMIESAHDNGAVVFRN   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~----~~~~~~~~~i~-----~-----~-~~v~~~~~~~~v~~~d   65 (182)
                      +|+|||||++|+..|..|++...+|+++.+++..-.    ....|......     .     . ..|+ +..+..+...+
T Consensus       393 ~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~-~~~~~~v~~~~  471 (690)
T 3k30_A          393 RVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVE-IYRESPMTGDD  471 (690)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEE-EESSCCCCHHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCE-EEECCeecHHH
Confidence            589999999999999999999999999998754310    01122211100     0     0 0122 11112333334


Q ss_pred             CcEEecCEEEEecccccC
Q 037525           66 GHTVHADVILHCTGYKYH   83 (182)
Q Consensus        66 g~~~~~D~vi~atG~~~~   83 (182)
                      +..+.+|.+|+|||..+.
T Consensus       472 ~~~~~~d~lvlAtG~~~~  489 (690)
T 3k30_A          472 IVEFGFEHVITATGATWR  489 (690)
T ss_dssp             HHHTTCCEEEECCCEEEC
T ss_pred             HhhcCCCEEEEcCCCccc
Confidence            445679999999999854

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=95.38  E-value=0.011  Score=50.07  Aligned_cols=32  Identities=22%  Similarity=0.345  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||.+|+-+|.+|++.+.+|.++.+.+
T Consensus         5 DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~   36 (501)
T 2qcu_A            5 DLIVIGGGINGAGIAADAAGRGLSVLMLEAQD   36 (501)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence            59999999999999999999988999999864

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=95.38  E-value=0.011  Score=51.88  Aligned_cols=31  Identities=6%  Similarity=0.242  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||||.+|++.|..+++.+.+|.++.++
T Consensus        29 DVIVIGgG~AGl~AAlalAr~G~kVlLIEk~   59 (637)
T 2zxi_A           29 DVVVIGGGHAGIEAALAAARMGAKTAMFVLN   59 (637)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEec
Confidence            5999999999999999999998999999976

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=95.31  E-value=0.012  Score=49.96  Aligned_cols=33  Identities=15%  Similarity=0.260  Sum_probs=30.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+=+|..|++.+.+|.++++.+.
T Consensus        14 dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~   46 (499)
T 2qa2_A           14 SVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQ   46 (499)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESCSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            489999999999999999999999999998653

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=95.30  E-value=0.0077  Score=49.89  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccC------CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA------KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a------~~V~l~~r~~   32 (182)
                      +|+|||||.+|+-.|..|++.+      .+|+++++++
T Consensus         7 dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~   44 (470)
T 3i6d_A            7 HVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP   44 (470)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCC
Confidence            4899999999999999999988      7999999864

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=95.30  E-value=0.012  Score=49.40  Aligned_cols=32  Identities=13%  Similarity=0.195  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-.|..|++.+.+|+++.+++
T Consensus         5 DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~   36 (476)
T 3lad_A            5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (476)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            58999999999999999999999999999875

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=95.29  E-value=0.011  Score=50.17  Aligned_cols=32  Identities=19%  Similarity=0.290  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||.+|+-.|..|++.+.+|+++.+.+
T Consensus         9 dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~   40 (512)
T 3e1t_A            9 DLIVIGGGPGGSTLASFVAMRGHRVLLLEREA   40 (512)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence            48999999999999999999988999999875

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=95.27  E-value=0.011  Score=50.88  Aligned_cols=32  Identities=16%  Similarity=0.250  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-+|..|++.+.+|.++++.+
T Consensus        28 dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~   59 (549)
T 2r0c_A           28 DVLILGGGPVGMALALDLAHRQVGHLVVEQTD   59 (549)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            48999999999999999999988999999865

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=95.26  E-value=0.014  Score=47.53  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-.|..|++.  ..+|.++.+..
T Consensus        81 DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~  114 (344)
T 3jsk_A           81 DIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV  114 (344)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSS
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            589999999999999999997  77899999875

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=95.26  E-value=0.011  Score=52.11  Aligned_cols=31  Identities=13%  Similarity=0.336  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||||.+|++.|..+++.+.+|.++.++
T Consensus        30 DVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~   60 (651)
T 3ces_A           30 DVIIIGGGHAGTEAAMAAARMGQQTLLLTHN   60 (651)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CEEEECChHHHHHHHHHHHhCCCCEEEEeec
Confidence            4899999999999999999999999999976

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=95.26  E-value=0.0099  Score=47.64  Aligned_cols=32  Identities=3%  Similarity=0.163  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccC------CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA------KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a------~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-+|..|++.+      .+|+++.+..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            5899999999999999999986      7999999864

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=95.25  E-value=0.01  Score=48.84  Aligned_cols=32  Identities=16%  Similarity=0.226  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-+|..|++.  +.+|+++.++.
T Consensus        38 dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~   71 (405)
T 3c4n_A           38 DIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG   71 (405)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            489999999999999999998  88999998753

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=95.23  E-value=0.013  Score=50.02  Aligned_cols=32  Identities=16%  Similarity=0.260  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhc---cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG---VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~---~a~~V~l~~r~~   32 (182)
                      +|+|||||.+|.-.|..|++   .+.+|+|+.+..
T Consensus         7 dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   41 (538)
T 2aqj_A            7 NIVIVGGGTAGWMAASYLVRALQQQANITLIESAA   41 (538)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence            48999999999999999999   788999999853

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=95.23  E-value=0.014  Score=47.15  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+-.|..|++.  ..+|.++.+.+.
T Consensus        67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~  101 (326)
T 2gjc_A           67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA  101 (326)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcc
Confidence            589999999999999999997  789999998643

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=95.19  E-value=0.015  Score=49.38  Aligned_cols=32  Identities=16%  Similarity=0.216  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++++++
T Consensus         6 ~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~   37 (520)
T 1s3e_A            6 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD   37 (520)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            59999999999999999999888999998754

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=95.18  E-value=0.016  Score=50.22  Aligned_cols=33  Identities=12%  Similarity=0.245  Sum_probs=30.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+-+|..|++.+.+|+++++.+.
T Consensus        51 DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~   83 (570)
T 3fmw_A           51 DVVVVGGGPVGLMLAGELRAGGVGALVLEKLVE   83 (570)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            599999999999999999999999999998653

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=95.17  E-value=0.015  Score=48.79  Aligned_cols=33  Identities=9%  Similarity=0.232  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++++++.
T Consensus        13 ~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~   45 (489)
T 2jae_A           13 SVVVLGGGPAGLCSAFELQKAGYKVTVLEARTR   45 (489)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence            589999999999999999998889999988654

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=95.14  E-value=0.014  Score=50.33  Aligned_cols=32  Identities=16%  Similarity=0.203  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||.+|+-+|.+|++.+.+|.++.+++
T Consensus        20 DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d   51 (561)
T 3da1_A           20 DLLVIGGGITGAGIALDAQVRGIQTGLVEMND   51 (561)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            48999999999999999999999999999863

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=95.13  E-value=0.017  Score=48.13  Aligned_cols=32  Identities=19%  Similarity=0.335  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++++++
T Consensus        18 ~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~   49 (478)
T 2ivd_A           18 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   49 (478)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            69999999999999999999888999998865

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=95.13  E-value=0.013  Score=49.79  Aligned_cols=32  Identities=9%  Similarity=0.261  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+ .+|+++++++
T Consensus        10 ~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~   42 (516)
T 1rsg_A           10 KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD   42 (516)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            5899999999999999999988 8999998764

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=95.11  E-value=0.015  Score=50.29  Aligned_cols=32  Identities=9%  Similarity=0.228  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||.+|+-+|.+|++.+.+|+|+.+.+
T Consensus        34 DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~   65 (571)
T 2rgh_A           34 DLLIIGGGITGAGVAVQAAASGIKTGLIEMQD   65 (571)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            58999999999999999999999999998764

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=95.09  E-value=0.017  Score=46.36  Aligned_cols=31  Identities=13%  Similarity=0.199  Sum_probs=28.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-+|..|++ +.+|+++.+++
T Consensus        11 dv~IIGaGi~Gls~A~~La~-G~~V~vlE~~~   41 (381)
T 3nyc_A           11 DYLVIGAGIAGASTGYWLSA-HGRVVVLEREA   41 (381)
T ss_dssp             SEEEECCSHHHHHHHHHHTT-TSCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHhC-CCCEEEEECCC
Confidence            58999999999999999995 78999999874

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=95.09  E-value=0.015  Score=48.18  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++.+++.
T Consensus        31 dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~   63 (397)
T 3hdq_A           31 DYLIVGAGFAGSVLAERLASSGQRVLIVDRRPH   63 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECccHHHHHHHHHHHHCCCceEEEeccCC
Confidence            489999999999999999999889999998654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=95.07  E-value=0.018  Score=50.65  Aligned_cols=31  Identities=13%  Similarity=0.133  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||||.+|+-.|..|++.+.+|+++.+.
T Consensus       274 DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~  304 (676)
T 3ps9_A          274 EAAIIGGGIASALLSLALLRRGWQVTLYCAD  304 (676)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4899999999999999999999999999985

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=95.04  E-value=0.017  Score=48.48  Aligned_cols=32  Identities=9%  Similarity=0.136  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-.|..|++...+|+++.+++
T Consensus         7 dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~   38 (478)
T 1v59_A            7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (478)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            48999999999999999999988999999854

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=95.04  E-value=0.018  Score=50.79  Aligned_cols=31  Identities=16%  Similarity=0.125  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||||.+|+-.|..|++.+.+|+++.+.
T Consensus       266 DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~  296 (689)
T 3pvc_A          266 DIAIIGGGIVSALTALALQRRGAVVTLYCAD  296 (689)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCcHHHHHHHHHHHHCCCcEEEEeCC
Confidence            5899999999999999999999999999985

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=95.03  E-value=0.014  Score=51.34  Aligned_cols=31  Identities=16%  Similarity=0.259  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||||.+|++.|..+++.+.+|.++.++
T Consensus        23 DVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~   53 (641)
T 3cp8_A           23 DVIVVGAGHAGCEAALAVARGGLHCLLITSD   53 (641)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEEec
Confidence            4899999999999999999998999999976

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=95.03  E-value=0.016  Score=47.99  Aligned_cols=32  Identities=16%  Similarity=0.235  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++++++
T Consensus         7 ~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~   38 (453)
T 2yg5_A            7 DVAIVGAGPSGLAAATALRKAGLSVAVIEARD   38 (453)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence            48999999999999999999888999998764

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=95.03  E-value=0.014  Score=50.31  Aligned_cols=33  Identities=15%  Similarity=0.271  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++.+.+.
T Consensus       123 DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~  155 (566)
T 1qo8_A          123 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPF  155 (566)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            489999999999999999998889999998653

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=95.03  E-value=0.018  Score=47.49  Aligned_cols=33  Identities=24%  Similarity=0.296  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++. +.+|+++++++.
T Consensus         9 ~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~   42 (399)
T 1v0j_A            9 DLFVVGSGFFGLTIAERVATQLDKRVLVLERRPH   42 (399)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            589999999999999999998 889999998754

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=95.01  E-value=0.019  Score=50.50  Aligned_cols=33  Identities=15%  Similarity=0.266  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|..|++...+|+++.+++.
T Consensus       375 ~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~  407 (671)
T 1ps9_A          375 NLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE  407 (671)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            489999999999999999999889999998754

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=95.01  E-value=0.019  Score=46.79  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++++++.
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~   35 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            589999999999999999998889999988653

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=94.99  E-value=0.012  Score=48.78  Aligned_cols=30  Identities=17%  Similarity=0.152  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r   30 (182)
                      +|+|||+|.+|+-+|..|++.+ .+|+++.+
T Consensus        25 dVvIIGgGiaGls~A~~La~~G~~~V~vlE~   55 (448)
T 3axb_A           25 DYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA   55 (448)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence            4899999999999999999988 89999998

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=94.93  E-value=0.016  Score=50.84  Aligned_cols=32  Identities=16%  Similarity=0.330  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhc-cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG-VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~-~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-+|..|++ .+.+|.++.+++
T Consensus        34 dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~   66 (639)
T 2dkh_A           34 DVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKE   66 (639)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCTTSCEEEECSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            48999999999999999999 888999999865

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=94.89  E-value=0.019  Score=49.83  Aligned_cols=32  Identities=19%  Similarity=0.387  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhcc------CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV------AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~------a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-.|..|++.      ..+|.++.+.+
T Consensus        37 DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~   74 (584)
T 2gmh_A           37 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   74 (584)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCC
Confidence            599999999999999999998      78999999864

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=94.88  E-value=0.017  Score=50.25  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||++|.-.|..|++.+.+|+++.+.+
T Consensus        25 DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~   56 (591)
T 3i3l_A           25 KVAIIGGGPAGSVAGLTLHKLGHDVTIYERSA   56 (591)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHcCCCCEEEEcCCC
Confidence            48999999999999999999999999999873

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=94.87  E-value=0.019  Score=49.33  Aligned_cols=32  Identities=16%  Similarity=0.217  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhc---cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG---VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~---~a~~V~l~~r~~   32 (182)
                      +|+|||||.+|.=.|..|++   .+.+|+|+.+.+
T Consensus        27 dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           27 KILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             cEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            48999999999999999999   778999999753

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=94.87  E-value=0.019  Score=47.26  Aligned_cols=31  Identities=16%  Similarity=0.296  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|.+|+-.|..|.+.+.+|+++.++
T Consensus        46 ~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~   76 (376)
T 2e1m_A           46 RILIVGAGIAGLVAGDLLTRAGHDVTILEAN   76 (376)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            5899999999999999999998999999987

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=94.86  E-value=0.013  Score=49.62  Aligned_cols=32  Identities=19%  Similarity=0.233  Sum_probs=28.1

Q ss_pred             CEEEEcCCccHHHHHHHHhc---cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG---VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~---~a~~V~l~~r~~   32 (182)
                      +|+|||||.+|.=.|..|++   .+.+|+|+.+.+
T Consensus         4 dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~   38 (511)
T 2weu_A            4 SVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             eEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence            58999999999999999999   888999998753

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=94.86  E-value=0.022  Score=47.87  Aligned_cols=33  Identities=12%  Similarity=0.138  Sum_probs=30.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++++++.
T Consensus        15 ~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~   47 (504)
T 1sez_A           15 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK   47 (504)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCC
Confidence            489999999999999999999899999998754

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=94.83  E-value=0.019  Score=48.77  Aligned_cols=33  Identities=15%  Similarity=0.283  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++.+.+|.++++.+.
T Consensus        43 DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~   75 (510)
T 4at0_A           43 DVVVAGYGIAGVAASIEAARAGADVLVLERTSG   75 (510)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            489999999999999999999889999998653

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=94.79  E-value=0.02  Score=48.24  Aligned_cols=33  Identities=18%  Similarity=0.266  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|..|++..  .+|+++.+.+.
T Consensus         8 ~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~   42 (460)
T 1cjc_A            8 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   42 (460)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence            5899999999999999999977  78999998754

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=94.64  E-value=0.021  Score=47.70  Aligned_cols=32  Identities=9%  Similarity=0.173  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+  .+|+++.+++
T Consensus         6 ~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~   39 (475)
T 3lov_A            6 RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGE   39 (475)
T ss_dssp             EEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            5899999999999999999988  8999998854

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=94.62  E-value=0.019  Score=48.93  Aligned_cols=32  Identities=22%  Similarity=0.224  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhc------------cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG------------VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~------------~a~~V~l~~r~~   32 (182)
                      +|+|||||++|.=.|..|++            .+.+|+|+++..
T Consensus         9 dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~   52 (526)
T 2pyx_A            9 EIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD   52 (526)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence            48999999999999999999            678999999753

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=94.31  E-value=0.031  Score=47.11  Aligned_cols=31  Identities=26%  Similarity=0.434  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|.+|+-.|..|++...+|.++.+.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            5899999999999999999888899999876

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=94.31  E-value=0.038  Score=47.74  Aligned_cols=33  Identities=12%  Similarity=0.278  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+..|..|++...+|+++.+.+.
T Consensus       128 ~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~  160 (572)
T 1d4d_A          128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI  160 (572)
T ss_dssp             SEEEECCSHHHHHHHHHHHSSSCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            589999999999999999998889999998653

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=94.31  E-value=0.027  Score=47.27  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++.+++.
T Consensus        41 ~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~   73 (495)
T 2vvm_A           41 DVIVIGGGYCGLTATRDLTVAGFKTLLLEARDR   73 (495)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSB
T ss_pred             CEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            489999999999999999998889999998653

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=94.30  E-value=0.026  Score=49.74  Aligned_cols=32  Identities=16%  Similarity=0.342  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhc-----cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG-----VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~-----~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+=+|..|++     .+-+|.++.+++
T Consensus        10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~   46 (665)
T 1pn0_A           10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   46 (665)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence            48999999999999999999     888999999865

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=94.25  E-value=0.041  Score=46.54  Aligned_cols=32  Identities=19%  Similarity=0.350  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+ .+|+++.+++
T Consensus        11 ~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~   43 (484)
T 4dsg_A           11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECND   43 (484)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCSEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence            5899999999999999999987 7899999764

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=94.21  E-value=0.036  Score=47.65  Aligned_cols=32  Identities=22%  Similarity=0.441  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..+++ ..+|.++.+...
T Consensus        10 DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~   41 (540)
T 1chu_A           10 DVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV   41 (540)
T ss_dssp             SEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred             CEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence            58999999999999999999 889999988653

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.20  E-value=0.044  Score=41.87  Aligned_cols=31  Identities=13%  Similarity=0.275  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||||.+|.--+..|.+.+.+|+++.+.
T Consensus        33 ~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           33 SVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            6999999999999999999988899998764

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=94.14  E-value=0.035  Score=50.06  Aligned_cols=32  Identities=9%  Similarity=0.331  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~   32 (182)
                      +|+|||||.+|+-+|..|++.+. +|+++.++.
T Consensus         6 dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~   38 (830)
T 1pj5_A            6 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   38 (830)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence            59999999999999999999887 899999865

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=93.99  E-value=0.036  Score=48.14  Aligned_cols=32  Identities=9%  Similarity=0.283  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++.+.+|.++.+..
T Consensus         9 DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~   40 (588)
T 2wdq_A            9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF   40 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            48999999999999999999888999998753

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=93.80  E-value=0.066  Score=37.74  Aligned_cols=31  Identities=23%  Similarity=0.294  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|+|+|..|..++..|.+...+|+++.+.
T Consensus         5 ~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            5 HFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            5899999999999999999988899999885

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=93.77  E-value=0.058  Score=36.87  Aligned_cols=32  Identities=16%  Similarity=0.322  Sum_probs=28.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|..|..+|..|.+...+|+++.|.+
T Consensus         6 ~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            6 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            48999999999999999999888899988753

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=93.76  E-value=0.045  Score=46.44  Aligned_cols=33  Identities=15%  Similarity=0.251  Sum_probs=30.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|.-+|..|++.+++|.++.+++.
T Consensus        22 dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~   54 (475)
T 3p1w_A           22 DVIILGTGLKECILSGLLSHYGKKILVLDRNPY   54 (475)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            489999999999999999999999999998764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.75  E-value=0.055  Score=38.31  Aligned_cols=33  Identities=15%  Similarity=0.172  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|+|+|..|.-+|..|...+.+|+++.|.+.
T Consensus        21 ~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           21 YIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            489999999999999999998889999988643

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=93.64  E-value=0.053  Score=47.86  Aligned_cols=32  Identities=6%  Similarity=0.022  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++.+.+|.++.+..
T Consensus         7 DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~   38 (660)
T 2bs2_A            7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (660)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             cEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            59999999999999999999888999998753

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=93.60  E-value=0.06  Score=44.73  Aligned_cols=33  Identities=15%  Similarity=0.179  Sum_probs=30.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++.+++.
T Consensus         8 ~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~   40 (433)
T 1d5t_A            8 DVIVLGTGLTECILSGIMSVNGKKVLHMDRNPY   40 (433)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            589999999999999999999999999998654

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=93.56  E-value=0.051  Score=47.35  Aligned_cols=32  Identities=16%  Similarity=0.283  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+  .+|.++.+..
T Consensus         7 DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~   40 (602)
T 1kf6_A            7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (602)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            5999999999999999999987  7899998753

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=93.56  E-value=0.048  Score=47.76  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+.+|.++.+.+
T Consensus        48 dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~   79 (623)
T 3pl8_A           48 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGE   79 (623)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCcEEEEeccC
Confidence            48999999999999999999989999998864

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=93.55  E-value=0.056  Score=35.77  Aligned_cols=32  Identities=19%  Similarity=0.177  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|+|+|+|..|..++..|.+.+ .+|+++.|.+
T Consensus         7 ~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            7 NICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            4899999999999999999987 7898888854

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=93.47  E-value=0.05  Score=47.65  Aligned_cols=32  Identities=13%  Similarity=0.197  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..+++.+.+|.++.+..
T Consensus        20 DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~   51 (621)
T 2h88_A           20 DAVVVGAGGAGLRAAFGLSEAGFNTACVTKLF   51 (621)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence            48999999999999999999888899998753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.43  E-value=0.065  Score=37.28  Aligned_cols=32  Identities=16%  Similarity=0.131  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|.|..|..+|..|.+...+|+++.+.+
T Consensus         9 ~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            9 HALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            58999999999999999999888999998854

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.41  E-value=0.048  Score=43.00  Aligned_cols=32  Identities=22%  Similarity=0.298  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||||.+|.--+..|.+.+.+|+++....
T Consensus        15 ~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           15 RILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             EEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            48999999999999999999999999998653

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.30  E-value=0.069  Score=36.93  Aligned_cols=32  Identities=34%  Similarity=0.527  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|..|..+|..|.+.+.+|+++.+.+
T Consensus         8 ~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            58999999999999999999888999998754

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=93.26  E-value=0.059  Score=47.42  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=30.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++.+++.
T Consensus       109 ~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~  141 (662)
T 2z3y_A          109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR  141 (662)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            589999999999999999999999999988654

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=93.19  E-value=0.07  Score=46.83  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=28.2

Q ss_pred             CEEEEcCCccHHHHHHHHh---c-cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLA---G-VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~---~-~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..++   + .+.+|.++.+..
T Consensus        24 DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~   59 (643)
T 1jnr_A           24 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   59 (643)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence            5899999999999999999   5 677899998754

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=92.88  E-value=0.085  Score=44.05  Aligned_cols=32  Identities=16%  Similarity=0.359  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++... +|+++.+++
T Consensus         6 ~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~   38 (472)
T 1b37_A            6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   38 (472)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCceEEEeCCC
Confidence            58999999999999999999876 799998753

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=92.85  E-value=0.077  Score=48.22  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=30.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++.+++.
T Consensus       280 ~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~  312 (852)
T 2xag_A          280 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR  312 (852)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEEecCc
Confidence            589999999999999999999999999988654

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=92.84  E-value=0.071  Score=47.96  Aligned_cols=32  Identities=16%  Similarity=0.372  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++.+++
T Consensus       338 ~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~  369 (776)
T 4gut_A          338 SVIIIGAGPAGLAAARQLHNFGIKVTVLEAKD  369 (776)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            48999999999999999999999999998754

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=92.79  E-value=0.076  Score=46.90  Aligned_cols=32  Identities=13%  Similarity=0.241  Sum_probs=28.5

Q ss_pred             CEEEEcCCccHHHHHHHHhcc------CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV------AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~------a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|.++++.      +.+|.++.+..
T Consensus        24 DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~   61 (662)
T 3gyx_A           24 DLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKAS   61 (662)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSC
T ss_pred             CEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecC
Confidence            599999999999999999987      77899998753

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=92.64  E-value=0.086  Score=45.20  Aligned_cols=31  Identities=19%  Similarity=0.333  Sum_probs=28.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +++|||+|.+|.=+|..|++ ..+|.++++++
T Consensus        28 D~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~   58 (536)
T 1ju2_A           28 DYVIVGGGTSGCPLAATLSE-KYKVLVLERGS   58 (536)
T ss_dssp             EEEEECCSTTHHHHHHHHTT-TSCEEEECSSB
T ss_pred             cEEEECccHHHHHHHHHHhc-CCcEEEEecCC
Confidence            37999999999999999999 88999998863

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=92.33  E-value=0.11  Score=35.55  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|..|..++..|.+...+|+++.+.+
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999998877898888753

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=92.30  E-value=0.088  Score=44.51  Aligned_cols=32  Identities=19%  Similarity=0.275  Sum_probs=28.0

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~   32 (182)
                      +++|||+|.+|.=+|..|++. ..+|.|+++++
T Consensus        19 D~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~   51 (526)
T 3t37_A           19 DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGE   51 (526)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTSCEEEECSSB
T ss_pred             eEEEECccHHHHHHHHHHHhCCCCeEEEEcCCC
Confidence            479999999999999999984 45899999875

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=92.09  E-value=0.096  Score=44.77  Aligned_cols=32  Identities=25%  Similarity=0.344  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|.=+|..|++...+|.+++++.
T Consensus         9 D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~   40 (546)
T 1kdg_A            9 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   40 (546)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            48999999999999999999888999998864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.07  E-value=0.1  Score=37.74  Aligned_cols=32  Identities=9%  Similarity=0.089  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~   32 (182)
                      +|+|+|.|..|..+|..|.+. +.+|+++.+.+
T Consensus        41 ~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           41 QVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            589999999999999999988 88899998754

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=90.74  E-value=0.25  Score=39.07  Aligned_cols=32  Identities=25%  Similarity=0.282  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|+.|.=+|..|++.+.+|+++.|+.
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            4 RIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            68999999999999999999888999999864

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=90.68  E-value=0.15  Score=38.05  Aligned_cols=32  Identities=16%  Similarity=0.352  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|..|..+|..|.+...+|+++.+.+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            68999999999999999999888999998754

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=90.66  E-value=0.11  Score=46.45  Aligned_cols=34  Identities=21%  Similarity=0.286  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--------CeEEEEeccC-CC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--------KEVHLVSRSV-AD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--------~~V~l~~r~~-~~   34 (182)
                      +|+|||+|.+|+-.|..|.+.+        .+|+++++++ .+
T Consensus        58 ~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           58 RIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             eEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            5899999999999999999876        7899998876 44

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=90.26  E-value=0.22  Score=42.18  Aligned_cols=33  Identities=9%  Similarity=0.114  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +++|||+|.+|.-+|..|++...+|.+++++..
T Consensus         7 d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   39 (504)
T 1n4w_A            7 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   39 (504)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            489999999999999999998889999998763

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=90.13  E-value=0.23  Score=39.45  Aligned_cols=32  Identities=31%  Similarity=0.255  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|..|.=+|..|++.+.+|+++.|++
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            4 NILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             EEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            58999999999999999999888999999864

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=90.12  E-value=0.22  Score=42.31  Aligned_cols=34  Identities=12%  Similarity=0.093  Sum_probs=30.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~   34 (182)
                      +++|||+|.+|.-+|..|++...+|.+++++..+
T Consensus        13 d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A           13 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            4799999999999999999988899999987643

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=89.93  E-value=0.21  Score=43.27  Aligned_cols=33  Identities=18%  Similarity=0.308  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~   33 (182)
                      +++|||+|.+|+=+|..|++.. .+|.|++.++.
T Consensus         8 DyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            8 DFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             EEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            3799999999999999999976 48999998765

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=89.57  E-value=0.24  Score=41.68  Aligned_cols=31  Identities=16%  Similarity=0.158  Sum_probs=28.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|.+|.--+..|.+.+.+|+++...
T Consensus        14 ~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           14 DCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            5899999999999999999998899999864

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=89.30  E-value=0.3  Score=37.70  Aligned_cols=32  Identities=22%  Similarity=0.085  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|+.|.-+|..|++.+.+|+++.|++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            58999999999999999999888999998864

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=89.20  E-value=0.32  Score=42.18  Aligned_cols=32  Identities=13%  Similarity=0.286  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhc-cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG-VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~-~a~~V~l~~r~~   32 (182)
                      +++|||+|.+|.-+|..|++ ...+|.+++++.
T Consensus        26 d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~   58 (587)
T 1gpe_A           26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (587)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            47999999999999999999 678999998764

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=88.83  E-value=0.3  Score=41.90  Aligned_cols=32  Identities=25%  Similarity=0.301  Sum_probs=28.4

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~   32 (182)
                      +++|||+|.+|.=+|..|++. ..+|.+++++.
T Consensus        15 d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~   47 (546)
T 2jbv_A           15 DYIVVGGGSAGAAVAARLSEDPAVSVALVEAGP   47 (546)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTSCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCCEEEEecCC
Confidence            489999999999999999997 67899998763

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=88.80  E-value=0.37  Score=35.87  Aligned_cols=33  Identities=15%  Similarity=0.152  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|.|||.|+.|.-+|..|++...+|+++.|++.
T Consensus        21 ~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           21 EITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            489999999999999999998889999887653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=88.78  E-value=0.32  Score=37.93  Aligned_cols=32  Identities=13%  Similarity=0.043  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|.-|.-+|..++..+.+|++..|.+
T Consensus         6 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            58999999999999999999988999988764

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=88.23  E-value=0.28  Score=39.43  Aligned_cols=32  Identities=19%  Similarity=0.114  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.-|..||..++..+-+|++....+
T Consensus         8 ~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            8 DVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            58999999999999999999999999998754

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=88.21  E-value=0.37  Score=37.59  Aligned_cols=32  Identities=19%  Similarity=0.190  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|+.|.-+|..|++.+.+|+++.|++
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            58999999999999999999888999998754

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=88.07  E-value=0.32  Score=38.15  Aligned_cols=32  Identities=19%  Similarity=0.357  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|+-|.=+|..|++.+.+|+++.|+.
T Consensus         4 kI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            4 SVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            68999999999999999998888899998864

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=88.03  E-value=0.38  Score=37.77  Aligned_cols=32  Identities=19%  Similarity=0.284  Sum_probs=28.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|.-|.-+|..|+..+.+|+++.|.+
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            48999999999999999999888999988754

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=88.02  E-value=0.5  Score=35.27  Aligned_cols=32  Identities=25%  Similarity=0.265  Sum_probs=28.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||.|..|..+|..|++...+|+++.|+.
T Consensus        30 ~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           30 KVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999998877898887753

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=88.02  E-value=0.31  Score=40.59  Aligned_cols=32  Identities=3%  Similarity=0.147  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||.|.||+..|..|++.+.+|+.+..+.
T Consensus         7 ~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~   38 (439)
T 2x5o_A            7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (439)
T ss_dssp             CEEEECCHHHHHHHHHHHHTTTCCCEEEESSS
T ss_pred             EEEEEeecHHHHHHHHHHHhCCCEEEEEECCC
Confidence            68999999999999999999999999998754

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=87.70  E-value=0.24  Score=34.41  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=26.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|..|..++..|.....+|+++.|..
T Consensus        23 ~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           23 KILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             EEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            58999999999999999988666688887753

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=87.69  E-value=0.32  Score=42.04  Aligned_cols=32  Identities=16%  Similarity=0.214  Sum_probs=28.1

Q ss_pred             CEEEEcCCccHHHHHHHHhc-cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG-VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~-~a~~V~l~~r~~   32 (182)
                      +++|||+|.+|+=+|..|++ ...+|.|+++++
T Consensus         4 D~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~   36 (566)
T 3fim_B            4 DYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGV   36 (566)
T ss_dssp             EEEESCCSTTHHHHHHHHTTSTTCCEEEECSSB
T ss_pred             CEEEECCcHHHHHHHHHHHhCcCCcEEEEecCC
Confidence            37999999999999999998 566899998764

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=87.58  E-value=0.52  Score=34.67  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=28.5

Q ss_pred             CEEEEc-CCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVG-SSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG-~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+||| +|..|..+|..|++...+|+++.|.+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999 99999999999999888899888753

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=87.44  E-value=0.48  Score=37.86  Aligned_cols=31  Identities=23%  Similarity=0.311  Sum_probs=28.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+.|.=+|..|++.+.+|+++.|.
T Consensus         5 kI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            5 RICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            6899999999999999999988899999885

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=87.35  E-value=0.56  Score=39.17  Aligned_cols=32  Identities=19%  Similarity=0.197  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||.|.||+-+|..|.+.+.+|+.+.++.
T Consensus        11 ~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A           11 KVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             EEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            48999999999999999999999999998753

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=87.32  E-value=0.41  Score=36.78  Aligned_cols=32  Identities=16%  Similarity=0.251  Sum_probs=28.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|+|||+|-.|..+|..|++.+ .+++++.+..
T Consensus        33 ~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           33 RVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             eEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            5899999999999999999965 5899988754

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=87.18  E-value=0.56  Score=35.93  Aligned_cols=32  Identities=22%  Similarity=0.186  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|.|+|..|..++..|.+.+.+|+.+.|++
T Consensus         7 ~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            7 TLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             EEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             cEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            58999999999999999999888999999875

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=87.17  E-value=0.55  Score=38.28  Aligned_cols=41  Identities=17%  Similarity=0.453  Sum_probs=30.9

Q ss_pred             CeEEcceeEEeeCC-C--eEEEcCCcEEecCEEEEecc--------cccCCC
Q 037525           45 NMWLHSMIESAHDN-G--AVVFRNGHTVHADVILHCTG--------YKYHFP   85 (182)
Q Consensus        45 ~i~~~~~v~~~~~~-~--~v~~~dg~~~~~D~vi~atG--------~~~~~~   85 (182)
                      +|..+..|+++..+ +  .|++.+|+++.+|.||+|+|        +.|+++
T Consensus       219 ~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~  270 (431)
T 3k7m_X          219 EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALP  270 (431)
T ss_dssp             CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCC
T ss_pred             ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCC
Confidence            57777888888642 2  35566887799999999999        776654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=87.00  E-value=0.58  Score=34.20  Aligned_cols=32  Identities=19%  Similarity=0.296  Sum_probs=29.0

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|.|+ |..|..++..|.+.+.+|+.+.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            5899996 9999999999999888999999864

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=86.99  E-value=0.55  Score=41.35  Aligned_cols=34  Identities=15%  Similarity=0.127  Sum_probs=31.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~   34 (182)
                      +|+|||.|..+.=+|..|++.+++|.++.|++.+
T Consensus        10 D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~   43 (650)
T 1vg0_A           10 DVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYY   43 (650)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcc
Confidence            5899999999999999999999999999998754

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=86.86  E-value=0.45  Score=41.30  Aligned_cols=32  Identities=13%  Similarity=0.184  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~   32 (182)
                      +++|||+|.+|+=+|..|++. ..+|.|++.++
T Consensus        21 DyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           21 DYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            379999999999999999975 56899999876

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=86.80  E-value=0.48  Score=37.75  Aligned_cols=32  Identities=13%  Similarity=0.026  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|..|.-+|..|++.+.+|+++.|++
T Consensus         6 ki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            6 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            58999999999999999999888899988753

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=86.68  E-value=0.7  Score=35.47  Aligned_cols=33  Identities=24%  Similarity=0.413  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|.|+|..|..++..|.+.+.+|+.+.|+..
T Consensus         5 ~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            5 KILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            589999999999999999998889999998753

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=86.63  E-value=0.51  Score=37.22  Aligned_cols=32  Identities=16%  Similarity=0.157  Sum_probs=28.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC--eEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~   32 (182)
                      +|+|||+|..|.-+|..|+....  +|+++.|..
T Consensus         9 kI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            9 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            58999999999999999998765  899998754

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=86.60  E-value=0.59  Score=33.68  Aligned_cols=33  Identities=15%  Similarity=0.257  Sum_probs=29.4

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|.|+ |..|..++..|.+.+.+|+++.|++.
T Consensus         5 ~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             EEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            4899998 99999999999998889999998653

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=86.27  E-value=0.57  Score=37.02  Aligned_cols=31  Identities=19%  Similarity=0.272  Sum_probs=28.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|+.|.=+|..|+ .+.+|+++.|++
T Consensus         4 kI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            4 KIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             EEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            5899999999999999999 778999998864

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=86.25  E-value=0.55  Score=37.24  Aligned_cols=31  Identities=23%  Similarity=0.232  Sum_probs=27.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.-|.=+|..|++.+.+|+++ +++
T Consensus        21 kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           21 KVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            5899999999999999999988899998 543

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=86.13  E-value=0.65  Score=34.13  Aligned_cols=32  Identities=22%  Similarity=0.262  Sum_probs=29.1

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|.|+ |..|..++..|.+.+.+|+++.|+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            5899998 9999999999999888999999864

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=86.03  E-value=0.89  Score=35.61  Aligned_cols=33  Identities=6%  Similarity=0.088  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|.|||.|..|.-+|..|++.+.+|++..|.+.
T Consensus        17 ~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           17 KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            589999999999999999998889999887653

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=85.82  E-value=0.88  Score=35.05  Aligned_cols=31  Identities=16%  Similarity=0.198  Sum_probs=27.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|..|.-+|..|++ ..+|+++.|.+
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            58999999999999999999 88898887754

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=85.77  E-value=0.72  Score=35.83  Aligned_cols=32  Identities=13%  Similarity=0.132  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|+.|.-+|..|++.+.+|++..|.+
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP   34 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            68999999999999999999888999988764

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=85.46  E-value=0.63  Score=37.78  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|+-|.-+|..|++.+.+|++..|++
T Consensus        31 kI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           31 PIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             eEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            58999999999999999999988999998864

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=85.10  E-value=0.97  Score=35.76  Aligned_cols=31  Identities=13%  Similarity=0.156  Sum_probs=27.0

Q ss_pred             CEEEEcCCc-cHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSA-SAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~-sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||.|+ .|.-+|..|......|++++++
T Consensus       161 ~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  192 (288)
T 1b0a_A          161 NAVVIGASNIVGRPMSMELLLAGCTTTVTHRF  192 (288)
T ss_dssp             EEEEECCCTTTHHHHHHHHHTTTCEEEEECSS
T ss_pred             EEEEECCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence            589999997 5999999999988899998753

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=84.94  E-value=0.99  Score=34.98  Aligned_cols=32  Identities=6%  Similarity=0.043  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|+.|.-+|..|++...+|+++.|.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            68999999999999999998877898887754

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=84.75  E-value=0.81  Score=35.78  Aligned_cols=132  Identities=14%  Similarity=0.095  Sum_probs=70.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCCCCCeEEcceeEEeeCCCeEEEcCCcEEecCEEEEeccc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTGY   80 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~~~~i~~~~~v~~~~~~~~v~~~dg~~~~~D~vi~atG~   80 (182)
                      +|+|+|+|-.|.-++..|++.+.+|+++.|...-.  +.+      . .-.+....      +++-.  ++|.||-||..
T Consensus       120 ~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka--~~l------a-~~~~~~~~------~~~l~--~~DiVInaTp~  182 (269)
T 3phh_A          120 NALILGAGGSAKALACELKKQGLQVSVLNRSSRGL--DFF------Q-RLGCDCFM------EPPKS--AFDLIINATSA  182 (269)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTH--HHH------H-HHTCEEES------SCCSS--CCSEEEECCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHH------H-HCCCeEec------HHHhc--cCCEEEEcccC
Confidence            58999999999999999999888999998864310  000      0 00011111      11111  78999999855


Q ss_pred             ccCC-CCCCCCCce-ecCCCccccccccccCCCCCCCEEEE------eccCCcccccHHHHHHHHHHHHHcCCCCCCCHH
Q 037525           81 KYHF-PFLETNGIV-TMDDNRVGPLYKHVFPPVLAPWLSFV------GLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQE  152 (182)
Q Consensus        81 ~~~~-~~l~~~~~~-~~~~~~~~~ly~~~~~~~~~p~l~~i------G~~~~~~~~~~~e~qa~~ia~~l~g~~~lP~~~  152 (182)
                      .... +.++.+... .+....+  ++.-+..|. .|   |+      |. .......+...||...-..|.|.  -|+.+
T Consensus       183 Gm~~~~~l~~~~l~~~l~~~~~--v~D~vY~P~-T~---ll~~A~~~G~-~~~~Gl~MLv~Qa~~~f~lw~g~--~~~~~  253 (269)
T 3phh_A          183 SLHNELPLNKEVLKGYFKEGKL--AYDLAYGFL-TP---FLSLAKELKT-PFQDGKDMLIYQAALSFEKFSAS--QIPYS  253 (269)
T ss_dssp             CCCCSCSSCHHHHHHHHHHCSE--EEESCCSSC-CH---HHHHHHHTTC-CEECSHHHHHHHHHHHHHHHTTT--SSCHH
T ss_pred             CCCCCCCCChHHHHhhCCCCCE--EEEeCCCCc-hH---HHHHHHHCcC-EEECCHHHHHHHHHHHHHHHhCC--CCCHH
Confidence            3321 222221000 0111111  122222221 11   11      11 11133678889999999999995  35666


Q ss_pred             HHHHHH
Q 037525          153 EMMEDT  158 (182)
Q Consensus       153 ~m~~~~  158 (182)
                      .+.+..
T Consensus       254 ~~~~~~  259 (269)
T 3phh_A          254 KAFEVM  259 (269)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=84.74  E-value=0.73  Score=35.70  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=28.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|..|.-+|..|++.+.+|+++.|..
T Consensus       121 ~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          121 RILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            48999999999999999999888999988763

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=84.65  E-value=0.8  Score=34.09  Aligned_cols=32  Identities=19%  Similarity=0.247  Sum_probs=29.1

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|.|+ |..|..++..|++.+.+|+++.|++
T Consensus        23 ~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           23 RVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             eEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            4899998 9999999999999888999999865

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=84.50  E-value=0.67  Score=36.56  Aligned_cols=30  Identities=17%  Similarity=0.322  Sum_probs=27.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r   30 (182)
                      +|.|||+|+.|.-+|..|++.+.+|+++.|
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            589999999999999999998889999988

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=84.25  E-value=0.44  Score=35.80  Aligned_cols=31  Identities=23%  Similarity=0.345  Sum_probs=26.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|..|..+|..|.+... |+++.+.+
T Consensus        11 ~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A           11 HVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             EEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             EEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            48999999999999999998776 88887754

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=84.11  E-value=0.99  Score=35.93  Aligned_cols=31  Identities=16%  Similarity=0.075  Sum_probs=27.1

Q ss_pred             CEEEEcCCc-cHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSA-SAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~-sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||.|+ .|.-+|..|......|++++++
T Consensus       167 ~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  198 (301)
T 1a4i_A          167 HAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK  198 (301)
T ss_dssp             EEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             EEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence            589999997 6999999999988899999754

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=84.03  E-value=0.88  Score=35.76  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=28.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|..|.-+|..|++.+.+|+++.|.+
T Consensus        32 ~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            58999999999999999998877898887754

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=83.98  E-value=0.8  Score=35.55  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|+.|.-+|..|++.+.+|++..|.+
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP   34 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            58999999999999999999988999887754

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=83.92  E-value=0.76  Score=35.00  Aligned_cols=32  Identities=13%  Similarity=0.260  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|.|||.|+.|.-+|..|++.. .+|+++.|++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            5899999999999999999887 8899888753

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=83.88  E-value=0.93  Score=35.02  Aligned_cols=33  Identities=24%  Similarity=0.293  Sum_probs=30.0

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      ||+|.|| |..|..++..|.+.+.+|+.+.|++.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            6899998 99999999999999999999998753

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=83.87  E-value=0.93  Score=34.44  Aligned_cols=33  Identities=21%  Similarity=0.340  Sum_probs=29.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|.|||.|+-|.-+|..|++.+.+|++..|++.
T Consensus        21 kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           21 KIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            589999999999999999998889999888643

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=83.74  E-value=0.92  Score=35.92  Aligned_cols=32  Identities=22%  Similarity=0.254  Sum_probs=28.1

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~   32 (182)
                      +|+|||+|..|.-+|..|+..  +.+|+++.+.+
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            589999999999999999984  67899998864

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=83.58  E-value=1.2  Score=35.09  Aligned_cols=31  Identities=13%  Similarity=0.193  Sum_probs=26.6

Q ss_pred             CEEEEcCCcc-HHHHHHHHhcc--CCeEEEEecc
Q 037525            1 VIILVGSSAS-AVDICRDLAGV--AKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~s-g~d~A~~l~~~--a~~V~l~~r~   31 (182)
                      +|+|||.|+. |.-+|..|.+.  ...|++++|+
T Consensus       160 ~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~  193 (281)
T 2c2x_A          160 HVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTG  193 (281)
T ss_dssp             EEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTT
T ss_pred             EEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence            4899999985 99999999988  7889998764

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=83.53  E-value=0.51  Score=35.32  Aligned_cols=31  Identities=13%  Similarity=0.237  Sum_probs=26.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEE-Eecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHL-VSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l-~~r~   31 (182)
                      +|.|||.|+.|.-+|..|++.+.+|++ ..|.
T Consensus        25 kI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~   56 (220)
T 4huj_A           25 TYAIIGAGAIGSALAERFTAAQIPAIIANSRG   56 (220)
T ss_dssp             CEEEEECHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            689999999999999999998878888 4454

>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}

Probab=83.46  E-value=1.2  Score=35.74  Aligned_cols=31  Identities=10%  Similarity=0.063  Sum_probs=27.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|+|+|.+|.+++..+.+.+-+|.++...
T Consensus         1 ~iliiG~g~~g~~~~~a~~~~G~~v~~~~~~   31 (369)
T 3aw8_A            1 MIGILGGGQLGRMLALAGYPLGLSFRFLDPS   31 (369)
T ss_dssp             CEEEECCSHHHHHHHHHHTTBTCCEEEEESC
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            6999999999999999998888788777654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=83.38  E-value=0.55  Score=39.50  Aligned_cols=32  Identities=19%  Similarity=0.442  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|..|..+|..|.....+|+++.+.+
T Consensus         5 ~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            58999999999999999999888999998754

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=83.29  E-value=0.92  Score=34.89  Aligned_cols=32  Identities=25%  Similarity=0.169  Sum_probs=28.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|+.|.-+|..|.+...+|+++.|.+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999998877898887753

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=83.28  E-value=1.1  Score=35.37  Aligned_cols=32  Identities=6%  Similarity=0.127  Sum_probs=29.3

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|.|+ |..|..++..|.+.+.+|+.+.|..
T Consensus        12 ~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A           12 RVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             CEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             eEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            5899999 9999999999999888999999965

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=83.27  E-value=1.1  Score=34.80  Aligned_cols=32  Identities=9%  Similarity=0.165  Sum_probs=27.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|..|.-+|..|++...+|+++.|.+
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            48999999999999999998877898887753

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=83.10  E-value=0.9  Score=35.82  Aligned_cols=32  Identities=13%  Similarity=0.147  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|+-|.-+|..|++.+.+|++..|.+
T Consensus        23 ~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~   54 (310)
T 3doj_A           23 EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL   54 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            58999999999999999999888999888754

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=83.07  E-value=1.1  Score=35.95  Aligned_cols=32  Identities=22%  Similarity=0.226  Sum_probs=28.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|||.+|.+++....+.+-+|.++...+
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~   34 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNP   34 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            58999999999999999888888998887643

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=83.01  E-value=1.1  Score=35.47  Aligned_cols=32  Identities=16%  Similarity=0.339  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|..|.-+|..|++.+.+|++..|.+
T Consensus        33 ~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           33 KITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             EEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            48999999999999999999888999887754

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=83.00  E-value=1.1  Score=32.84  Aligned_cols=33  Identities=18%  Similarity=0.297  Sum_probs=29.5

Q ss_pred             CEEEEc-CCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVG-SSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG-~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|.| +|..|..++..|++.+.+|+.+.|+..
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~   35 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVE   35 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGG
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            589999 799999999999998889999998753

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=82.86  E-value=1.1  Score=37.27  Aligned_cols=32  Identities=22%  Similarity=0.064  Sum_probs=28.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|+.|.-+|..|++.+.+|+++.|.+
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999888999988753

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=82.82  E-value=0.92  Score=37.60  Aligned_cols=32  Identities=13%  Similarity=0.078  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|.|..|..+|..|.+...+|+++.+.+
T Consensus         6 ~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~   37 (413)
T 3l9w_A            6 RVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP   37 (413)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            58999999999999999999888999998754

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=82.79  E-value=1.2  Score=35.41  Aligned_cols=32  Identities=13%  Similarity=0.107  Sum_probs=28.5

Q ss_pred             CEEEEcCCccHHH-HHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVD-ICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d-~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|-+|+- +|..|.+.+.+|+.+.++.
T Consensus         6 ~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            6 HIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             EEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            5899999999997 8888889999999998764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=82.72  E-value=0.98  Score=35.69  Aligned_cols=32  Identities=22%  Similarity=0.168  Sum_probs=27.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC--eEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~   32 (182)
                      +|+|||+|..|.-+|..|+....  +|.++.+.+
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            58999999999999999998655  899998753

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=82.72  E-value=1.2  Score=34.57  Aligned_cols=32  Identities=16%  Similarity=0.037  Sum_probs=27.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|..|.-+|..|++...+|+++.|.+
T Consensus         6 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            6 KIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             EEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            48999999999999999998877898877643

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=82.69  E-value=0.86  Score=35.95  Aligned_cols=32  Identities=9%  Similarity=0.197  Sum_probs=27.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~   32 (182)
                      +|+|||+|..|.-+|..|+...  .+|+++.+..
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            5899999999999999999876  6899988753

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=82.58  E-value=1.1  Score=35.19  Aligned_cols=32  Identities=22%  Similarity=0.404  Sum_probs=28.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||.|..|..+|..+...+.+|++..|..
T Consensus       159 ~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          159 QVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999999999998887899888753

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=82.57  E-value=1.3  Score=34.80  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=28.7

Q ss_pred             CEEEEc-CCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVG-SSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG-~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.||| .|+.|.-+|..|++.+.+|+++.|.+
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            589999 99999999999999888899988754

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=82.47  E-value=1.1  Score=35.05  Aligned_cols=32  Identities=16%  Similarity=0.355  Sum_probs=28.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||.|..|..+|..+...+.+|++..|..
T Consensus       157 ~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          157 NVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            48999999999999999998877898887753

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=82.35  E-value=0.76  Score=35.67  Aligned_cols=32  Identities=13%  Similarity=0.339  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|..|.-+|..|++.+.+|+++.|..
T Consensus       121 ~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          121 HVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             EEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999999999999888999998864

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=82.27  E-value=1  Score=35.79  Aligned_cols=32  Identities=19%  Similarity=0.201  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|+-|.=+|..|++.+.+|+++.|++
T Consensus        16 kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           16 RFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            58999999999999999999888999998853

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=82.26  E-value=0.88  Score=36.84  Aligned_cols=33  Identities=27%  Similarity=0.253  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-------CeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-------KEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-------~~V~l~~r~~~   33 (182)
                      +|.|||+|+-|.=+|..|++.+       .+|+++.|++.
T Consensus        23 kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            5899999999999999999876       78999988654

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=82.17  E-value=1  Score=34.25  Aligned_cols=32  Identities=9%  Similarity=0.156  Sum_probs=27.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccC----CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA----KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a----~~V~l~~r~~   32 (182)
                      +|.|||.|+-|.-+|..|++.+    .+|+++.|++
T Consensus         6 ~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~   41 (262)
T 2rcy_A            6 KLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSK   41 (262)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCc
Confidence            5899999999999999999876    5798887764

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=82.12  E-value=1  Score=35.73  Aligned_cols=32  Identities=19%  Similarity=0.141  Sum_probs=27.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~   32 (182)
                      +|+|||+|..|.-+|..|+.... +|+++.+.+
T Consensus         6 kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            6 KIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            48999999999999999998765 798888754

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=82.09  E-value=2.6  Score=33.90  Aligned_cols=21  Identities=10%  Similarity=-0.021  Sum_probs=19.4

Q ss_pred             CEEEEcCCccHHHHHHHHhcc
Q 037525            1 VIILVGSSASAVDICRDLAGV   21 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~   21 (182)
                      ||.|+|.|..|.++...|.+.
T Consensus         2 kVgI~G~G~iGr~llR~l~~~   22 (332)
T 1hdg_O            2 RVAINGFGRIGRLVYRIIYER   22 (332)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhC
Confidence            589999999999999999876

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=82.04  E-value=1.3  Score=33.98  Aligned_cols=31  Identities=16%  Similarity=0.272  Sum_probs=26.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~   31 (182)
                      +|+|||.|-.|.++|..|+..+ .+++++.+.
T Consensus        30 ~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           30 QVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             cEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            5899999999999999999964 578888764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=82.04  E-value=0.91  Score=33.42  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=29.3

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|.|+ |..|..++..|.+.+.+|+++.|++.
T Consensus         6 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (227)
T 3dhn_A            6 KIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE   39 (227)
T ss_dssp             EEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred             EEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            4899995 99999999999999889999998753

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=82.02  E-value=1.5  Score=33.76  Aligned_cols=32  Identities=16%  Similarity=0.301  Sum_probs=28.7

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|.|+ |..|..++..|.+.+.+|+.+.|..
T Consensus         6 ~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             EEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            5899997 9999999999999888899988864

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=81.91  E-value=1.1  Score=34.76  Aligned_cols=32  Identities=13%  Similarity=0.280  Sum_probs=28.3

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+ |+.|.-+|..|++.+.+|+++.|++
T Consensus        13 ~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           13 TVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4899999 9999999999999888899887753

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=81.90  E-value=1.6  Score=33.88  Aligned_cols=33  Identities=9%  Similarity=0.190  Sum_probs=29.2

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|.|+ |..|..++..|.+.+.+|+.+.|...
T Consensus        13 ~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             eEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            5899996 99999999999998888999998753

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=81.77  E-value=0.81  Score=36.82  Aligned_cols=32  Identities=19%  Similarity=0.186  Sum_probs=28.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|+-|.-+|..|++.+.+|+++.|++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            48999999999999999998877899988754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=81.76  E-value=1.1  Score=37.09  Aligned_cols=33  Identities=12%  Similarity=0.152  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|+|+|..|.-+|..+...+.+|+++.+++.
T Consensus       192 kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          192 KIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            589999999999999999988889998887653

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=81.73  E-value=1.1  Score=34.88  Aligned_cols=31  Identities=23%  Similarity=0.397  Sum_probs=27.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|-.|..+|..|++.+ +|+++.|+.
T Consensus       130 ~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          130 NIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            4899999999999999999998 999988753

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=81.70  E-value=1.6  Score=33.67  Aligned_cols=32  Identities=16%  Similarity=0.187  Sum_probs=28.8

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|.|+ |..|..++..|.+.+.+|+...|..
T Consensus         4 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            4 KILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             EEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            5899997 9999999999999888899988865

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=81.68  E-value=1.7  Score=33.80  Aligned_cols=32  Identities=16%  Similarity=0.216  Sum_probs=28.9

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|.|+ |..|..++..|.+.+.+|+++.|..
T Consensus         6 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (321)
T 3c1o_A            6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL   38 (321)
T ss_dssp             CEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence            5899996 9999999999999888899999875

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=81.57  E-value=1.2  Score=37.50  Aligned_cols=32  Identities=19%  Similarity=0.150  Sum_probs=28.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||+|.-|.-+|..|+..+.+|++..+.+
T Consensus        39 kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           39 SVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            48999999999999999999888999988754

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=81.53  E-value=1.5  Score=35.12  Aligned_cols=31  Identities=19%  Similarity=0.099  Sum_probs=27.2

Q ss_pred             CEEEEcCCcc-HHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSAS-AVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~s-g~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|.. |.-+|..|......|+++.|.
T Consensus       179 ~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          179 KCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             EEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             EEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            5899999975 999999999988889998775

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=81.50  E-value=1.3  Score=36.48  Aligned_cols=31  Identities=16%  Similarity=0.292  Sum_probs=27.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccC---CeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVA---KEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a---~~V~l~~r~   31 (182)
                      +|+|+|+|..|..+|..|++..   .+|.+..|.
T Consensus         3 kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~   36 (405)
T 4ina_A            3 KVLQIGAGGVGGVVAHKMAMNREVFSHITLASRT   36 (405)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCceEEEEEECC
Confidence            5899999999999999999876   489888875

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=81.45  E-value=1  Score=37.10  Aligned_cols=32  Identities=3%  Similarity=0.037  Sum_probs=28.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|..|.-+|..+...+.+|+++.|++
T Consensus       186 kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          186 SALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             EEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999998888999988765

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=81.27  E-value=1.2  Score=34.92  Aligned_cols=32  Identities=9%  Similarity=0.021  Sum_probs=28.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|+.|.-+|..|++.+.+|++..|.+
T Consensus         9 ~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            9 HVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            48999999999999999999888999988754

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=81.15  E-value=1.3  Score=33.60  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=27.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|..|.-+|..|.+...+|+++.|++
T Consensus         5 ~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            5 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            58999999999999999998877888887753

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=81.14  E-value=0.73  Score=36.78  Aligned_cols=33  Identities=21%  Similarity=0.211  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-------CeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-------KEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-------~~V~l~~r~~~   33 (182)
                      +|.|||+|+-|.-+|..|++.+       .+|+++.|++.
T Consensus        10 kI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A           10 KVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            4899999999999999999876       78999988654

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=81.08  E-value=1.5  Score=33.77  Aligned_cols=32  Identities=19%  Similarity=0.438  Sum_probs=27.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~   32 (182)
                      +|+|+|+|..|.-++..|.+.+. +|+++.|..
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            58999999999999999998654 899998864

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=81.03  E-value=1.2  Score=36.78  Aligned_cols=32  Identities=25%  Similarity=0.330  Sum_probs=28.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|+|+|+|..|.-+|..|...+ ++|+++.|..
T Consensus       194 kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~G  226 (388)
T 1vl6_A          194 KVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG  226 (388)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            5899999999999999999854 5899999873

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=81.01  E-value=1.5  Score=37.13  Aligned_cols=33  Identities=15%  Similarity=0.053  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CC-eEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGV-AK-EVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~-~V~l~~r~~~   33 (182)
                      +|.|||.|.-|.-+|..|++. +. +|+++.+.+.
T Consensus        20 kIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           20 KIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             EEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             EEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            589999999999999999999 88 9999988754

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=80.96  E-value=1.4  Score=33.72  Aligned_cols=32  Identities=16%  Similarity=0.248  Sum_probs=27.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||.|..|.-+|..|.+...+|+++.|..
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999988665888887753

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=80.88  E-value=0.9  Score=35.47  Aligned_cols=30  Identities=23%  Similarity=0.106  Sum_probs=27.3

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-----C-CeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGV-----A-KEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-----a-~~V~l~~r   30 (182)
                      +|.|||+|+.|.=+|..|++.     + .+|+++.|
T Consensus        10 ~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A           10 KIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            489999999999999999987     7 78999887

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=80.84  E-value=1.2  Score=37.35  Aligned_cols=32  Identities=16%  Similarity=0.137  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|+.|.-+|..|++.+.+|+++.+.+
T Consensus         4 kI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            58999999999999999999988999988764

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=80.74  E-value=1.3  Score=34.23  Aligned_cols=33  Identities=18%  Similarity=0.284  Sum_probs=29.6

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|.|+ |..|..++..|.+.+.+|+.+.|...
T Consensus         9 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            9 RILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             eEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            4899999 99999999999998889999988754

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=80.53  E-value=1.4  Score=34.67  Aligned_cols=32  Identities=25%  Similarity=0.444  Sum_probs=27.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~   32 (182)
                      +|+|+|+|..|.-+|..|++.+. +|+++.|..
T Consensus       143 ~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          143 RILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             EEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            48999999999999999998764 899988863

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=80.40  E-value=1.2  Score=35.43  Aligned_cols=32  Identities=19%  Similarity=0.066  Sum_probs=27.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC--eEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~   32 (182)
                      +|+|||+|..|.-+|..|+....  +|+++.+.+
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            58999999999999999998655  899988753

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=80.34  E-value=1.5  Score=33.25  Aligned_cols=32  Identities=6%  Similarity=0.090  Sum_probs=27.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC----eEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK----EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~----~V~l~~r~~   32 (182)
                      +|.|||.|+-|.-+|..|.+...    +|+++.|++
T Consensus         4 ~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            4 QIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             eEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            68999999999999999998765    898887753

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=80.34  E-value=1.4  Score=34.97  Aligned_cols=32  Identities=19%  Similarity=0.255  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|.|||.|+-|.-+|..|++.+ .+|++..|.+
T Consensus        26 ~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           26 TIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             eEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            4899999999999999999988 8999988864

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=80.32  E-value=1.4  Score=33.62  Aligned_cols=32  Identities=25%  Similarity=0.386  Sum_probs=27.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCe-EEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKE-VHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~-V~l~~r~~   32 (182)
                      +|.|||.|..|.-+|..|++.+.+ |+++.|.+
T Consensus        12 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           12 PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             eEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            589999999999999999987666 77777653

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=80.32  E-value=1.3  Score=36.61  Aligned_cols=32  Identities=6%  Similarity=0.171  Sum_probs=27.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|..|.-++..+...+.+|+++.+++
T Consensus       174 ~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          174 KVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            58999999999999998888777899888764

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=80.30  E-value=1.6  Score=34.26  Aligned_cols=138  Identities=15%  Similarity=0.206  Sum_probs=71.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCCC--CCCCCCCCCCeEEcceeEEeeCCCeEEEcCCcEEecCEEEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVADG--TYEKQPGFDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHC   77 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~~--~~~~~~~~~~i~~~~~v~~~~~~~~v~~~dg~~~~~D~vi~a   77 (182)
                      +|+|+|+|-.|.-++..|++.+ ++|+++.|...-.  ..+.+..      ...+....      +.+-. -++|.||-|
T Consensus       128 ~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~------~~~~~~~~------~~~l~-~~aDiIIna  194 (281)
T 3o8q_A          128 TILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAA------YGEVKAQA------FEQLK-QSYDVIINS  194 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGG------GSCEEEEE------GGGCC-SCEEEEEEC
T ss_pred             EEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhc------cCCeeEee------HHHhc-CCCCEEEEc
Confidence            4899999999999999999976 5899998854210  0000000      00111111      11111 358999999


Q ss_pred             cccccC--CCCCCCCCceecCCCccccccccccCCCCCCCEEEE-----eccCCcccccHHHHHHHHHHHHHcCCCCCCC
Q 037525           78 TGYKYH--FPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFV-----GLPWKVIPFPLCEYQSKWIAGVLSGQIVLPS  150 (182)
Q Consensus        78 tG~~~~--~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~i-----G~~~~~~~~~~~e~qa~~ia~~l~g~~~lP~  150 (182)
                      |.....  .+.++.+ .+  ..+.+  +|.-+..|.  ++-+.-     |.........+...||...-..|.|.  -|+
T Consensus       195 Tp~gm~~~~~~l~~~-~l--~~~~~--V~DlvY~P~--~T~ll~~A~~~G~~~~~~Gl~Mlv~Qa~~~f~lwtg~--~~~  265 (281)
T 3o8q_A          195 TSASLDGELPAIDPV-IF--SSRSV--CYDMMYGKG--YTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGL--RPG  265 (281)
T ss_dssp             SCCCC----CSCCGG-GE--EEEEE--EEESCCCSS--CCHHHHHHHHTTCSEEECTHHHHHHHHHHHHHHHHSC--CCC
T ss_pred             CcCCCCCCCCCCCHH-Hh--CcCCE--EEEecCCCc--cCHHHHHHHHCCCCEEECcHHHHHHHHHHHHHHHhCC--CCC
Confidence            965432  1222211 11  11111  122222221  121110     11101123568889999999999995  477


Q ss_pred             HHHHHHHHHH
Q 037525          151 QEEMMEDTKA  160 (182)
Q Consensus       151 ~~~m~~~~~~  160 (182)
                      .+.|.+.+.+
T Consensus       266 ~~~~~~~l~~  275 (281)
T 3o8q_A          266 TKQILRELRK  275 (281)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888776643

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=80.24  E-value=1.3  Score=35.40  Aligned_cols=32  Identities=16%  Similarity=0.006  Sum_probs=27.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~   32 (182)
                      +|+|||+|..|.-+|..|+.... +|.+..+.+
T Consensus        11 kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           11 KVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            58999999999999999998665 688887754

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=80.20  E-value=1.8  Score=33.65  Aligned_cols=32  Identities=19%  Similarity=0.358  Sum_probs=27.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|+|+|+|-.|.-++..|.+.+ ++|+++.|..
T Consensus       121 ~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~  153 (271)
T 1npy_A          121 KVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV  153 (271)
T ss_dssp             CEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            5899999999999999999865 5899988853

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=80.14  E-value=1.4  Score=35.66  Aligned_cols=32  Identities=9%  Similarity=0.322  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|..|..+|..+...+.+|+++.|++
T Consensus       168 ~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          168 SVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            48999999999999999998887999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	2e-15
d2gv8a2	107	c.3.1.5 (A:181-287) Flavin-dependent monoxygenase	1e-09

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 70.8 bits (172), Expect = 2e-15
 Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 11/147 (7%)

Query: 44  DNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTGYKYHF--------PFLETNGIVTM 95
           D  W+ +   +   +             +         Y +                +  
Sbjct: 143 DGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLID 202

Query: 96  DDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEEMM 155
           D + V  +Y+H+F     P L+FVGL   V+PFP  + Q+ ++A V SG++ LPS+EE +
Sbjct: 203 DGSHVHNVYQHIFYIP-DPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQL 261

Query: 156 EDTKAFYSTLEASGTPKRYTHNMGDYQ 182
           +           SG    Y        
Sbjct: 262 KWQDELMF--SLSGANNMYHSLDYPKD 286

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 51.2 bits (122), Expect = 1e-09
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 2   IILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAH-DNGA 60
           +++VG ++SA D+ R L  VAK     S              +++     I         
Sbjct: 35  VLVVGGASSANDLVRHLTPVAKHPIYQSLL-----GGGDIQNESLQQVPEITKFDPTTRE 89

Query: 61  VVFRNGHTVHA-DVILHC 77
           +  + G  +   D +++C
Sbjct: 90  IYLKGGKVLSNIDRVIYC 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.83
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.5
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.49
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.46
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.43
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.38
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.35
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.33
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.32
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.25
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.24
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.23
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.23
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.22
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.19
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.18
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	99.16
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.16
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.12
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.1
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.07
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.07
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.04
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.02
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.01
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.99
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.91
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.87
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.83
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.83
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.77
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.74
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.74
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.73
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.67
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.66
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.62
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.6
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.57
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.44
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.38
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.29
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.28
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.28
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.28
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.15
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.13
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.12
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.07
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.06
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.04
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.0
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	97.96
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.83
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.75
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.61
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	97.55
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	97.37
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.26
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.25
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	97.25
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.22
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	97.18
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	97.06
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.05
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	96.99
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.96
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.95
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.85
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	96.81
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	96.75
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.69
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	96.66
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	96.65
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.63
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	96.56
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	96.46
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	96.37
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	96.36
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	96.21
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	96.1
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	96.09
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	96.06
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	96.0
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.96
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	95.95
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	95.83
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	95.81
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.77
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.72
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	95.63
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	95.6
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.5
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.45
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	95.35
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.13
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	95.1
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	94.6
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	94.48
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	94.38
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	94.36
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.25
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.21
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.17
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.94
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	93.26
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.01
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	92.74
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	92.55
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.53
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	92.33
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	90.86
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	90.83
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.07
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	90.03
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	89.59
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	89.52
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	89.39
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	89.15
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	89.14
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	88.81
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	88.63
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	88.43
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	88.18
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	87.51
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	87.13
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	87.08
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	87.03
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	86.9
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	86.33
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	86.21
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	86.09
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	86.0
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	85.34
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	85.2
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	85.19
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	85.07
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	84.83
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	84.77
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	84.62
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	84.32
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	84.15
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	83.77
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	83.35
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	82.94
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	82.93
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	82.83
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	82.49
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	82.47
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	82.08
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	81.92
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	81.77
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	81.57
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	81.5
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	80.56

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.83  E-value=1.5e-19  Score=145.46  Aligned_cols=175  Identities=25%  Similarity=0.381  Sum_probs=119.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccCCC----CCC-----------------------------------CC
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSVAD----GTY-----------------------------------EK   39 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~~~----~~~-----------------------------------~~   39 (182)
                      ||+|||+|+||+-.|..|++..  .+|++++|+...    ...                                   ..
T Consensus         6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y~~   85 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRD   85 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCCTT
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccchh
Confidence            5999999999999999998754  489999988532    000                                   00


Q ss_pred             C----------------C----CC------------------CCeEEcceeEEeeC-CC--eEEEcCC---c---EEecC
Q 037525           40 Q----------------P----GF------------------DNMWLHSMIESAHD-NG--AVVFRNG---H---TVHAD   72 (182)
Q Consensus        40 ~----------------~----~~------------------~~i~~~~~v~~~~~-~~--~v~~~dg---~---~~~~D   72 (182)
                      +                +    .+                  .+|..+..|+++.. ++  .|++.++   +   ...+|
T Consensus        86 l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d  165 (335)
T d2gv8a1          86 LQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFD  165 (335)
T ss_dssp             CBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEES
T ss_pred             hhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEee
Confidence            0                0    00                  13455666776653 22  3666542   2   24589


Q ss_pred             EEEEecccccC--CCCCCCC------------CceecCCCccccccccccCCCCCCCEEEEeccCCcccccHHHHHHHHH
Q 037525           73 VILHCTGYKYH--FPFLETN------------GIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVIPFPLCEYQSKWI  138 (182)
Q Consensus        73 ~vi~atG~~~~--~~~l~~~------------~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~i  138 (182)
                      .||+|||....  .+.+...            ..+..++..+.++|+|++.+. +|+|+|+|.+....+++.+|.||.|+
T Consensus       166 ~VI~AtG~~s~p~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~ly~~~~~~~-~p~l~f~G~~~~v~~~~~~e~Qa~~~  244 (335)
T d2gv8a1         166 AVSICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIP-DPTLAFVGLALHVVPFPTSQAQAAFL  244 (335)
T ss_dssp             EEEECCCSSSSBCCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETT-CTTEEESSCCBSSCHHHHHHHHHHHH
T ss_pred             EEEEcccccccceecccccCCCCcchhcccCccceeccccceeeeecccccCC-CCceEEeeeEEEEecCCchHHHHHHH
Confidence            99999997532  2222110            011113345557999999998 79999999988777899999999999


Q ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceecCC
Q 037525          139 AGVLSGQIVLPSQEEMMEDTKAFYSTLEASGTPKRYTHNMG  179 (182)
Q Consensus       139 a~~l~g~~~lP~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~  179 (182)
                      +++++|+..||++++|.+|..++...  .++.+. .+|.++
T Consensus       245 a~~~~g~~~Lps~~~m~~~~~~~~~~--~~~~~~-~~~~~~  282 (335)
T d2gv8a1         245 ARVWSGRLKLPSKEEQLKWQDELMFS--LSGANN-MYHSLD  282 (335)
T ss_dssp             HHHHTTSSCCCCHHHHHHHHHHHHHH--HTTCGG-GTTBCT
T ss_pred             HHHHcCCccCCCcchhhhhhHHHHHh--hcccCc-cceecC
Confidence            99999999999999999998764332  344334 556654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.50  E-value=3.5e-14  Score=102.53  Aligned_cols=138  Identities=14%  Similarity=0.123  Sum_probs=91.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC---------CCCC-----C-------C--CeEEcceeEEeeC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE---------KQPG-----F-------D--NMWLHSMIESAHD   57 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~---------~~~~-----~-------~--~i~~~~~v~~~~~   57 (182)
                      ||+|||||++|+|+|..|++. .+|+++.+.+......         ..+.     +       .  ++.....+++++.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~~-~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~   80 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQT-YEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDR   80 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-SEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEET
T ss_pred             eEEEECCcHHHHHHHHHHHcC-CCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccccc
Confidence            699999999999999999874 5899998865432110         0110     0       0  2233456777765


Q ss_pred             CCeEEEcCCcEEecCEEEEecccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEeccCCc-----ccccHHH
Q 037525           58 NGAVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV-----IPFPLCE  132 (182)
Q Consensus        58 ~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~-----~~~~~~e  132 (182)
                      +..+.+.+++++++|.+|||+|..++ +++... +++.+..-..+-+..   .+ .|++|.+|++...     ...+.+.
T Consensus        81 ~~~~~~~~~~~i~~D~li~a~G~~~~-~~~~~~-gl~~~~~i~v~~~~~---t~-~~~i~aiGD~~~~~~~~~~~~~~a~  154 (167)
T d1xhca1          81 GRKVVITEKGEVPYDTLVLATGAPNV-DLARRS-GIHTGRGILIDDNFR---TS-AKDVYAIGDCAEYSGIIAGTAKAAM  154 (167)
T ss_dssp             TTTEEEESSCEEECSEEEECCCEECC-HHHHHT-TCCBSSSEECCTTSB---CS-STTEEECGGGEEBTTBCCCSHHHHH
T ss_pred             ccccccccccccccceeEEEEEecCC-chhhhc-CceeCCceeeccccE---ec-CCCeEEeeecccCCCeEEChHHHHH
Confidence            55678888888999999999998764 343321 233322211122222   24 6999999997521     2346788


Q ss_pred             HHHHHHHHHHcCC
Q 037525          133 YQSKWIAGVLSGQ  145 (182)
Q Consensus       133 ~qa~~ia~~l~g~  145 (182)
                      .||+.+|+.|.|+
T Consensus       155 ~~a~~~a~~i~Ge  167 (167)
T d1xhca1         155 EQARVLADILKGE  167 (167)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999884

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.49  E-value=6.1e-14  Score=95.07  Aligned_cols=72  Identities=21%  Similarity=0.296  Sum_probs=58.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCCCCCeEEcceeEEeeCC-CeEEEcCCcEEe-cCEEEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDN-GAVVFRNGHTVH-ADVILHC   77 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~~~~i~~~~~v~~~~~~-~~v~~~dg~~~~-~D~vi~a   77 (182)
                      +|+|||+|+||+|+|.+|++.|++|+++.|+......     ..++...+.+.+++.+ ..+.|.||+.++ +|.||+|
T Consensus        34 ~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~-----~~~~~~~~~i~~~~~~~~~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          34 SVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ-----NESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             CEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB-----CSSEEEECCEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred             eEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc-----cccceecCCeeEEecCCCEEEEcCCCEEeCCCEEEEC
Confidence            6999999999999999999999998888877654321     1356677888888753 479999999885 8999998

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.46  E-value=1.3e-13  Score=101.11  Aligned_cols=139  Identities=12%  Similarity=0.095  Sum_probs=89.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC--CC-----------------CCCCCe--EEcceeEEeeCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE--KQ-----------------PGFDNM--WLHSMIESAHDN   58 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~--~~-----------------~~~~~i--~~~~~v~~~~~~   58 (182)
                      +|+|||||++|+|+|..|.+.+.+|+++.+++.... +.  .+                 ....++  .....++++..+
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~~   84 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQ   84 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEETT
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEeccccccccc
Confidence            589999999999999999998777666654432110 00  00                 000123  344567777643


Q ss_pred             -CeEEEcCCcEEecCEEEEecccccCCCCCCCC----CceecCCCccccccccccCCCCCCCEEEEeccCC------c--
Q 037525           59 -GAVVFRNGHTVHADVILHCTGYKYHFPFLETN----GIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWK------V--  125 (182)
Q Consensus        59 -~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~~----~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~------~--  125 (182)
                       ..+.+.||+++++|.+|+|||..|+..++...    ..+..+ +.+ ....++.. + .|++|.+|++..      +  
T Consensus        85 ~~~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~-~~I-~vd~~~~t-s-~~~IyA~GD~a~~~~~~~g~~  160 (183)
T d1d7ya1          85 AHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACD-DGI-FVDAYGRT-T-CPDVYALGDVTRQRNPLSGRF  160 (183)
T ss_dssp             TTEEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBS-SSE-ECCTTCBC-S-STTEEECGGGEEEECTTTCSE
T ss_pred             cceeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeC-CcE-Eeccceec-c-ccccchhhhhhccceeeCCce
Confidence             47888999999999999999999986555432    112222 222 22222222 3 699999998742      1  


Q ss_pred             ---ccccHHHHHHHHHHHHHc
Q 037525          126 ---IPFPLCEYQSKWIAGVLS  143 (182)
Q Consensus       126 ---~~~~~~e~qa~~ia~~l~  143 (182)
                         ..+..+..|++.+|+.|.
T Consensus       161 ~~~~~~~~A~~qg~~aa~nil  181 (183)
T d1d7ya1         161 ERIETWSNAQNQGIAVARHLV  181 (183)
T ss_dssp             EECCCHHHHHHHHHHHHHHHH
T ss_pred             echhHHHHHHHHHHHHHHHHc
Confidence               135678999999999875

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.43  E-value=5.9e-13  Score=105.42  Aligned_cols=158  Identities=16%  Similarity=0.168  Sum_probs=106.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC-------CCCC-----------------------C---CCC-----
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD-------GTYE-----------------------K---QPG-----   42 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~-------~~~~-----------------------~---~~~-----   42 (182)
                      +|+|||+|.||+-.|..|.+.+.+|.++++.+..       ..++                       .   .|.     
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~~   88 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEIL   88 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHHH
T ss_pred             CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchHH
Confidence            4899999999999999999988899999986532       0000                       0   000     


Q ss_pred             ---------C---CCeEEcceeEEee--CCC---eEEEcCCcEEecCEEEEecccccCC--CCCCCC-----CceecC--
Q 037525           43 ---------F---DNMWLHSMIESAH--DNG---AVVFRNGHTVHADVILHCTGYKYHF--PFLETN-----GIVTMD--   96 (182)
Q Consensus        43 ---------~---~~i~~~~~v~~~~--~~~---~v~~~dg~~~~~D~vi~atG~~~~~--~~l~~~-----~~~~~~--   96 (182)
                               +   ++|..+.+|+++.  ++.   .|.+.++.+..+|.||.|||+....  +.+...     ++..+.  
T Consensus        89 ~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~~~i~g~~g~~l~~~  168 (298)
T d1w4xa1          89 RYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFKIDIRGVGNVALKEK  168 (298)
T ss_dssp             HHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHTSEEECGGGCBHHHH
T ss_pred             HHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCcccccccccCCCeeehhh
Confidence                     0   1466677787774  322   5788888889999999999985442  111110     111111  


Q ss_pred             -CCccccccccccCCCCCCCEEEEeccCCc----ccccHHHHHHHHHHHHHc-----CCCCC-CCHHHHHHHHHH
Q 037525           97 -DNRVGPLYKHVFPPVLAPWLSFVGLPWKV----IPFPLCEYQSKWIAGVLS-----GQIVL-PSQEEMMEDTKA  160 (182)
Q Consensus        97 -~~~~~~ly~~~~~~~~~p~l~~iG~~~~~----~~~~~~e~qa~~ia~~l~-----g~~~l-P~~~~m~~~~~~  160 (182)
                       .+. +..|+++..++ +||+|++++|+++    +...++|.|++||+++|+     |...+ |+++...+|.+.
T Consensus       169 W~~~-p~ty~G~~v~g-fPN~f~~~Gp~s~~~~~~~~~~~e~q~~~i~~~i~~~~~~~~~~ve~~~~a~~~~~~~  241 (298)
T d1w4xa1         169 WAAG-PRTYLGLSTAG-FPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKNGLTRSEAVLEKEDEWVEH  241 (298)
T ss_dssp             TTTS-CCCBTTTBCTT-STTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCCEEECHHHHHHHHHH
T ss_pred             chhh-HHHHHHHhcCC-CCeEEEecCCCCccccccHHHHHHHHHHHHHHHHHHHHhcCCCEEEechHHHHHHHHH
Confidence             112 36899999998 6999999887642    235678999999999975     32322 666666666543

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.38  E-value=6.6e-13  Score=96.79  Aligned_cols=141  Identities=18%  Similarity=0.179  Sum_probs=88.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCC-------CCCCC-C----------------CCe--EEcceeEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTY-------EKQPG-F----------------DNM--WLHSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~-------~~~~~-~----------------~~i--~~~~~v~~   54 (182)
                      +|+|||||++|+|+|.+|++.+.+|+++.+.+.....       ..+.. .                ...  .....+..
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (185)
T d1q1ra1           5 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQVTA   84 (185)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCEEE
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccceeee
Confidence            5999999999999999999988887776654421100       00000 0                011  11223333


Q ss_pred             eeC-CCeEEEcCCcEEecCEEEEecccccCCCCCCC--CCceecCCCccccccccccCCCCCCCEEEEeccCCc------
Q 037525           55 AHD-NGAVVFRNGHTVHADVILHCTGYKYHFPFLET--NGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV------  125 (182)
Q Consensus        55 ~~~-~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~--~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~------  125 (182)
                      +.. ...+.+.++.++++|.+++++|.++..+.+..  ...+..++.-..+.|..   .+ .|++|.+|++...      
T Consensus        85 ~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~~~~---ts-~~~vya~GD~~~~~~~~~~  160 (185)
T d1q1ra1          85 INRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINEHMQ---TS-DPLIMAVGDCARFHSQLYD  160 (185)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCTTSB---CS-STTEEECGGGEEEEETTTT
T ss_pred             ecccccEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCCccc---cc-hhhhhcchhhhccccccCC
Confidence            433 23678888889999999999998775443321  11222222211123333   24 6999999987421      


Q ss_pred             -----ccccHHHHHHHHHHHHHcCC
Q 037525          126 -----IPFPLCEYQSKWIAGVLSGQ  145 (182)
Q Consensus       126 -----~~~~~~e~qa~~ia~~l~g~  145 (182)
                           ..++.+..|++.+|..|.|+
T Consensus       161 ~~~~~~~a~~A~~~g~~aa~~i~G~  185 (185)
T d1q1ra1         161 RWVRIESVPNALEQARKIAAILCGK  185 (185)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred             cccchhhHHHHHHHHHHHHHHccCC
Confidence                 24678999999999999985

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.35  E-value=2.7e-12  Score=92.59  Aligned_cols=141  Identities=14%  Similarity=0.107  Sum_probs=86.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC--eEEEEeccCCCCCCC---------CCCC----------CCCeEE-cceeEEee-C
Q 037525            1 VIILVGSSASAVDICRDLAGVAK--EVHLVSRSVADGTYE---------KQPG----------FDNMWL-HSMIESAH-D   57 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~--~V~l~~r~~~~~~~~---------~~~~----------~~~i~~-~~~v~~~~-~   57 (182)
                      ||+|||||++|+|+|..|.+...  +|+++++++.+....         ....          ...+.. ...+..+. .
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   83 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDPD   83 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEECCTT
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeEeeeec
Confidence            69999999999999999998653  799998876431100         0000          011221 12223332 2


Q ss_pred             CCeEEEcCCcEEecCEEEEecccccCCCCCCCCCc-------eecCCCccccccccc-cCCCCCCCEEEEeccCCcc---
Q 037525           58 NGAVVFRNGHTVHADVILHCTGYKYHFPFLETNGI-------VTMDDNRVGPLYKHV-FPPVLAPWLSFVGLPWKVI---  126 (182)
Q Consensus        58 ~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~~~~-------~~~~~~~~~~ly~~~-~~~~~~p~l~~iG~~~~~~---  126 (182)
                      ...+.+.+++.+++|.+|+|||.++++++++....       +..+.... ...... ...+ .|++|.+|+.....   
T Consensus        84 ~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~i~~iGd~~~~~~~p  161 (186)
T d1fcda1          84 KKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWC-PVDIKTFESSI-HKGIHVIGDASIANPMP  161 (186)
T ss_dssp             TTEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSE-EBCSSSCBBSS-STTEEECTTSEECTTCC
T ss_pred             cceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccc-cceeeeeeccc-ccCceEeccccccCCCC
Confidence            23677888999999999999999999887764211       11111221 222222 2234 68999999875322   


Q ss_pred             -cccHHHHHHHHHHHHHc
Q 037525          127 -PFPLCEYQSKWIAGVLS  143 (182)
Q Consensus       127 -~~~~~e~qa~~ia~~l~  143 (182)
                       ....+..|++.+|..|.
T Consensus       162 ~~~~~A~~q~~~~A~ni~  179 (186)
T d1fcda1         162 KSGYSANSQGKVAAAAVV  179 (186)
T ss_dssp             SSHHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHHHHHHHHHHH
Confidence             24566778887777664

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.7e-12  Score=87.91  Aligned_cols=78  Identities=17%  Similarity=0.268  Sum_probs=59.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCC-----------C-CCeEEcceeEEeeCC--C--eEEEc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPG-----------F-DNMWLHSMIESAHDN--G--AVVFR   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~-----------~-~~i~~~~~v~~~~~~--~--~v~~~   64 (182)
                      +|+|||+|++|+|+|..|++.+.+|++++|++... +...+.           . -++..+..|+++..+  +  .+.++
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l-~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~  101 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-PSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELE  101 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEET
T ss_pred             EEEEECCChhhHHHHHHhhccccEEEEEeecchhh-hhcchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEEC
Confidence            58999999999999999999999999999987542 110000           0 134456677777642  2  46788


Q ss_pred             CCcEEecCEEEEecc
Q 037525           65 NGHTVHADVILHCTG   79 (182)
Q Consensus        65 dg~~~~~D~vi~atG   79 (182)
                      ||+++++|.||+|||
T Consensus       102 ~g~~~~~D~vi~a~G  116 (116)
T d1gesa2         102 DGRSETVDCLIWAIG  116 (116)
T ss_dssp             TSCEEEESEEEECSC
T ss_pred             CCCEEEcCEEEEecC
Confidence            999999999999998

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.32  E-value=5e-12  Score=87.28  Aligned_cols=77  Identities=17%  Similarity=0.327  Sum_probs=61.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCC------------CCC-CeEEcceeEEeeCCCeEEEcCCc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQP------------GFD-NMWLHSMIESAHDNGAVVFRNGH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~------------~~~-~i~~~~~v~~~~~~~~v~~~dg~   67 (182)
                      +|+|||||.+|+|+|..|++..++|+++.+++... ...++            ..+ ++..+..|+++.+ +.+++.||+
T Consensus        32 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~~-~~v~l~dg~  109 (121)
T d1d7ya2          32 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM-SRAAPATLADFVARYHAAQGVDLRFERSVTGSVD-GVVLLDDGT  109 (121)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-TTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEET-TEEEETTSC
T ss_pred             eEEEECcchhHHHHHHHhhcccceEEEEeeccccc-cccCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeC-CEEEECCCC
Confidence            58999999999999999999999999999987542 11111            111 3456678888876 489999999


Q ss_pred             EEecCEEEEecc
Q 037525           68 TVHADVILHCTG   79 (182)
Q Consensus        68 ~~~~D~vi~atG   79 (182)
                      ++++|.||+|+|
T Consensus       110 ~i~~D~vi~a~G  121 (121)
T d1d7ya2         110 RIAADMVVVGIG  121 (121)
T ss_dssp             EEECSEEEECSC
T ss_pred             EEECCEEEEeeC
Confidence            999999999998

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.6e-11  Score=91.18  Aligned_cols=143  Identities=13%  Similarity=0.104  Sum_probs=92.6

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCCCCCCC-----------------------------CC---C-----
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVADGTYE-----------------------------KQ---P-----   41 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~~~~~~-----------------------------~~---~-----   41 (182)
                      +++|||+|..|+++|..|.+.  ..+|+++.+.+...+.+                             .+   +     
T Consensus         6 ~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (213)
T d1m6ia1           6 PFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYV   85 (213)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGSB
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhhh
Confidence            479999999999999999874  44799987643221000                             00   0     


Q ss_pred             --------CCCCe--EEcceeEEeeC-CCeEEEcCCcEEecCEEEEecccccCCCCCCCCCceecCC--Ccccccccccc
Q 037525           42 --------GFDNM--WLHSMIESAHD-NGAVVFRNGHTVHADVILHCTGYKYHFPFLETNGIVTMDD--NRVGPLYKHVF  108 (182)
Q Consensus        42 --------~~~~i--~~~~~v~~~~~-~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~--~~~~~ly~~~~  108 (182)
                              ....|  ....+|++++. ++.|+++||+++++|.+|+|||..+....+....+++++.  +.+ ....++-
T Consensus        86 ~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i-~vd~~l~  164 (213)
T d1m6ia1          86 SAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGF-RVNAELQ  164 (213)
T ss_dssp             CTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSE-ECCTTCE
T ss_pred             hhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhh-hhhHhcC
Confidence                    00122  33467888863 2479999999999999999999877654443322333322  222 2222221


Q ss_pred             CCCCCCCEEEEeccCC----------cccccHHHHHHHHHHHHHcCCCC
Q 037525          109 PPVLAPWLSFVGLPWK----------VIPFPLCEYQSKWIAGVLSGQIV  147 (182)
Q Consensus       109 ~~~~~p~l~~iG~~~~----------~~~~~~~e~qa~~ia~~l~g~~~  147 (182)
                        . .|++|.+|++..          ...++.+..|++.+++.+.|..+
T Consensus       165 --~-~~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~~~  210 (213)
T d1m6ia1         165 --A-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAK  210 (213)
T ss_dssp             --E-ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCCC
T ss_pred             --c-CCceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCCCC
Confidence              2 279999998742          12356889999999999998753

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.24  E-value=1.9e-11  Score=83.56  Aligned_cols=79  Identities=20%  Similarity=0.258  Sum_probs=57.8

Q ss_pred             CEEEEcCCccHHHHHHHHhcc---CCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeCC--C--eEE
Q 037525            1 VIILVGSSASAVDICRDLAGV---AKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHDN--G--AVV   62 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~---a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~~--~--~v~   62 (182)
                      +|+|||||++|+|+|..+++.   +.+|+++.|++.... ++.         +... -++..+..|+++..+  +  .++
T Consensus        20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~   99 (117)
T d1feca2          20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVV   99 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEE
T ss_pred             eEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEE
Confidence            589999999999999887765   568999999875421 100         0001 135566788888632  2  478


Q ss_pred             EcCCcEEecCEEEEecc
Q 037525           63 FRNGHTVHADVILHCTG   79 (182)
Q Consensus        63 ~~dg~~~~~D~vi~atG   79 (182)
                      ++||+++++|.||||||
T Consensus       100 ~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2         100 FESGAEADYDVVMLAIG  116 (117)
T ss_dssp             ETTSCEEEESEEEECSC
T ss_pred             ECCCCEEEcCEEEEecC
Confidence            89999999999999998

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.23  E-value=1.1e-10  Score=86.28  Aligned_cols=142  Identities=13%  Similarity=0.154  Sum_probs=88.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccC--CeEEEEeccCCCCCC---------CCCCCC-------------C--CeEEcceeEE
Q 037525            1 VIILVGSSASAVDICRDLAGVA--KEVHLVSRSVADGTY---------EKQPGF-------------D--NMWLHSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a--~~V~l~~r~~~~~~~---------~~~~~~-------------~--~i~~~~~v~~   54 (182)
                      ||+|||||++|+|+|.+|.+..  .+|++++|++...+.         ..+...             .  ++..+..|++
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~   81 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA   81 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceee
Confidence            6999999999999999999863  479999887543211         011100             1  2345677888


Q ss_pred             eeCC-CeEEEc---CCcE--EecCEEEEecccccCC--------CCCCCCCceecC-CCccccccccccCCCCCCCEEEE
Q 037525           55 AHDN-GAVVFR---NGHT--VHADVILHCTGYKYHF--------PFLETNGIVTMD-DNRVGPLYKHVFPPVLAPWLSFV  119 (182)
Q Consensus        55 ~~~~-~~v~~~---dg~~--~~~D~vi~atG~~~~~--------~~l~~~~~~~~~-~~~~~~ly~~~~~~~~~p~l~~i  119 (182)
                      ++.+ +.+++.   +|++  +++|.+|+|+|..+..        .++..  .+..+ .+.+ ..-.. +.++ .|++|.+
T Consensus        82 i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~--~~~~~~~G~i-~vd~~-~~T~-~~~IyA~  156 (198)
T d1nhpa1          82 IQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKG--TLELHPNGLI-KTDEY-MRTS-EPDVFAV  156 (198)
T ss_dssp             EETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTT--TSCBCTTSCB-CCCTT-CBCS-STTEEEC
T ss_pred             EeeccccceeeecccccccccccceeeEeecceeecccccccccccccc--cceeccCCce-ecCCc-cccc-ccceEEe
Confidence            8743 456553   4543  6899999999987642        22222  11222 2222 11112 2234 6999999


Q ss_pred             eccCCc-----------ccccHHHHHHHHHHHHHcCCCC
Q 037525          120 GLPWKV-----------IPFPLCEYQSKWIAGVLSGQIV  147 (182)
Q Consensus       120 G~~~~~-----------~~~~~~e~qa~~ia~~l~g~~~  147 (182)
                      |++...           .....+..||+.+++.|.+..+
T Consensus       157 GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~~  195 (198)
T d1nhpa1         157 GDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK  195 (198)
T ss_dssp             GGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCC
T ss_pred             cceeecccccCCCcccccHHHHHHHHHHHHHHhhCCCCC
Confidence            987521           1234677899999999887654

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=9.4e-12  Score=86.47  Aligned_cols=80  Identities=20%  Similarity=0.334  Sum_probs=59.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCC----CCCCCCCeE--EcceeEEeeCC-C---eEEEcC---Cc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYE----KQPGFDNMW--LHSMIESAHDN-G---AVVFRN---GH   67 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~----~~~~~~~i~--~~~~v~~~~~~-~---~v~~~d---g~   67 (182)
                      +|+|||+|+||+|.|..|++.|++|++++|++.+...+    .+...++|.  .+..+.++.++ .   ++++.|   |+
T Consensus        32 ~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge  111 (126)
T d1fl2a2          32 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGD  111 (126)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCC
T ss_pred             eEEEEeCCHHHHHHHHhhhccCCceEEEecccccccccccccccccccceeEEcCcceEEEEccccceeeEEEEECCCCC
Confidence            58999999999999999999999999999998775321    122234554  35677777753 2   466754   54


Q ss_pred             --EEecCEEEEeccc
Q 037525           68 --TVHADVILHCTGY   80 (182)
Q Consensus        68 --~~~~D~vi~atG~   80 (182)
                        ++++|.||++.|.
T Consensus       112 ~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2         112 IHNIELAGIFVQIGL  126 (126)
T ss_dssp             EEEEECSEEEECSCE
T ss_pred             EEEEECCEEEEEeCC
Confidence              4789999999983

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=1.2e-11  Score=85.86  Aligned_cols=79  Identities=20%  Similarity=0.293  Sum_probs=58.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC----C---CCCCCeEE--cceeEEeeCCC----eEEEcCC-
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK----Q---PGFDNMWL--HSMIESAHDNG----AVVFRNG-   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~----~---~~~~~i~~--~~~v~~~~~~~----~v~~~dg-   66 (182)
                      +|+|||+|+||+|.|..|++.|++||+++|++.++..+.    +   ...+++..  +..+.++.+++    +|++.|. 
T Consensus        29 ~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~  108 (126)
T d1trba2          29 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQ  108 (126)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCT
T ss_pred             EEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccchhHHHHHHHHhhcccceeEecceEEEEEECCCCceEEEEEEECC
Confidence            589999999999999999999999999999987653211    1   01234443  45677776542    4677652 


Q ss_pred             -----cEEecCEEEEecc
Q 037525           67 -----HTVHADVILHCTG   79 (182)
Q Consensus        67 -----~~~~~D~vi~atG   79 (182)
                           +++++|.+|++.|
T Consensus       109 ~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2         109 NSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             TCCCCEEEECSEEEECSC
T ss_pred             CCceEEEEECCEEEEEeC
Confidence                 2478999999987

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.19  E-value=1.6e-11  Score=85.67  Aligned_cols=78  Identities=14%  Similarity=0.201  Sum_probs=57.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCC----CCCCCCCCeE--EcceeEEeeCCC------eEEEc---C
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTY----EKQPGFDNMW--LHSMIESAHDNG------AVVFR---N   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~----~~~~~~~~i~--~~~~v~~~~~~~------~v~~~---d   65 (182)
                      +|+|||+|+||+|.|..|++.|++||+++|++.++..    +.+...++|.  .+..+.++.+++      ++.+.   +
T Consensus        36 ~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~~~~~~~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~t  115 (130)
T d1vdca2          36 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVT  115 (130)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTT
T ss_pred             EEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccchhhhhccccCCceEEEeccEEEEEEccCCcccEEEEEEEECCC
Confidence            4899999999999999999999999999999887542    1233345655  356777776431      35554   3


Q ss_pred             Cc--EEecCEEEEec
Q 037525           66 GH--TVHADVILHCT   78 (182)
Q Consensus        66 g~--~~~~D~vi~at   78 (182)
                      |+  ++++|.||+++
T Consensus       116 ge~~~l~~dGvFVaI  130 (130)
T d1vdca2         116 GDVSDLKVSGLFFAI  130 (130)
T ss_dssp             CCEEEEECSEEEECS
T ss_pred             CCEEEEECCEEEEEC
Confidence            43  57999999874

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.18  E-value=1.3e-11  Score=85.12  Aligned_cols=78  Identities=18%  Similarity=0.288  Sum_probs=58.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC---------CCCCC-CeEEcceeEEeeCCCeEEEcCCcEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---------QPGFD-NMWLHSMIESAHDNGAVVFRNGHTVH   70 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~---------~~~~~-~i~~~~~v~~~~~~~~v~~~dg~~~~   70 (182)
                      +|+|||||++|+|+|..|++.+.+|++++|++.+..++.         +...+ ++..+..++++.++ ++ +.|++.++
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~-~v-~~~~~~i~  111 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEE-GV-LTNSGFIE  111 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECSCCEEEECSS-EE-EETTEEEE
T ss_pred             cEEEECCcHHHHHHHHHhhcccceEEEEeccccccCCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCC-EE-EeCCCEEE
Confidence            489999999999999999999999999999875421110         00011 33445678888664 54 56788899


Q ss_pred             cCEEEEeccc
Q 037525           71 ADVILHCTGY   80 (182)
Q Consensus        71 ~D~vi~atG~   80 (182)
                      +|.||||||.
T Consensus       112 ~D~vi~a~Gv  121 (122)
T d1xhca2         112 GKVKICAIGI  121 (122)
T ss_dssp             CSCEEEECCE
T ss_pred             CCEEEEEEEe
Confidence            9999999994

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.16  E-value=2.3e-11  Score=91.35  Aligned_cols=33  Identities=18%  Similarity=0.371  Sum_probs=30.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.||+|+|.++++.+++++++.|+..
T Consensus        34 ~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          34 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             EEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence            699999999999999999999999998887754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.16  E-value=6.9e-11  Score=82.67  Aligned_cols=78  Identities=12%  Similarity=0.171  Sum_probs=59.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCC-----------CC--CeEEcceeEEeeCC---C---eE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPG-----------FD--NMWLHSMIESAHDN---G---AV   61 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~-----------~~--~i~~~~~v~~~~~~---~---~v   61 (182)
                      +|+|||||++|+|+|..|++.+.+|+++++.+... ...++.           ..  ++..+..++++...   .   .+
T Consensus        37 ~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l-~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v  115 (133)
T d1q1ra2          37 RLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL-ERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAV  115 (133)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT-TTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEE
T ss_pred             EEEEECCchHHHHHHHHHHhhCcceeeeeeccccc-ccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEE
Confidence            58999999999999999999999999999987642 111110           01  34455677777531   1   47


Q ss_pred             EEcCCcEEecCEEEEecc
Q 037525           62 VFRNGHTVHADVILHCTG   79 (182)
Q Consensus        62 ~~~dg~~~~~D~vi~atG   79 (182)
                      .++||+++++|.||+|+|
T Consensus       116 ~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2         116 LCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             EETTSCEEECSEEEECCC
T ss_pred             ECCCCCEEECCEEEEeeC
Confidence            789999999999999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.12  E-value=1.5e-10  Score=79.22  Aligned_cols=78  Identities=15%  Similarity=0.224  Sum_probs=56.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCCC---------CCCC-CCeEEcceeEEeeC--CC--eEEEcC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYEK---------QPGF-DNMWLHSMIESAHD--NG--AVVFRN   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~~---------~~~~-~~i~~~~~v~~~~~--~~--~v~~~d   65 (182)
                      +|+|||||++|+|+|..|++.+.+|++++|++... .++.         +... -++..+..|+++..  ++  .+.+.|
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~  103 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSD  103 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETT
T ss_pred             EEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECC
Confidence            58999999999999999999999999999987542 1110         0001 13445677888752  22  377889


Q ss_pred             CcEE-ecCEEEEec
Q 037525           66 GHTV-HADVILHCT   78 (182)
Q Consensus        66 g~~~-~~D~vi~at   78 (182)
                      |+.+ .+|.||||.
T Consensus       104 G~~~~~~D~Vi~AI  117 (117)
T d1onfa2         104 GRIYEHFDHVIYCV  117 (117)
T ss_dssp             SCEEEEESEEEECC
T ss_pred             CCEEEeCCEEEEeC
Confidence            9887 479999984

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.10  E-value=1.3e-10  Score=79.16  Aligned_cols=78  Identities=14%  Similarity=0.216  Sum_probs=55.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeCCCeEEEc--C--
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHDNGAVVFR--N--   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~~~~v~~~--d--   65 (182)
                      +++|||||+.|+|+|..|++.+++|++++|.+.... ++.         +... -++..+..|+++.++ .....  +  
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~~~~~~~~~  101 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENG-CLLANDGKGG  101 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEETT-EEEEECSSSC
T ss_pred             eEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEEEEEcCC-eEEEEEcCCC
Confidence            589999999999999999999999999999875421 100         0000 133445678888653 43332  2  


Q ss_pred             CcEEecCEEEEecc
Q 037525           66 GHTVHADVILHCTG   79 (182)
Q Consensus        66 g~~~~~D~vi~atG   79 (182)
                      ++++++|.||+|||
T Consensus       102 ~~~i~~D~vi~A~G  115 (115)
T d1lvla2         102 QLRLEADRVLVAVG  115 (115)
T ss_dssp             CCEECCSCEEECCC
T ss_pred             eEEEEcCEEEEecC
Confidence            24689999999998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.9e-10  Score=80.66  Aligned_cols=79  Identities=15%  Similarity=0.257  Sum_probs=58.4

Q ss_pred             CEEEEcCCccHHHHHHHHhc----cCCeEEEEeccCCCCCCCCCCC-----------CC--CeEEcceeEEeeCCC---e
Q 037525            1 VIILVGSSASAVDICRDLAG----VAKEVHLVSRSVADGTYEKQPG-----------FD--NMWLHSMIESAHDNG---A   60 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~----~a~~V~l~~r~~~~~~~~~~~~-----------~~--~i~~~~~v~~~~~~~---~   60 (182)
                      +++|||||.+|+|+|.+|++    ...+|+++.+.+... ...++.           ..  ++..+..|+++..++   .
T Consensus        39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l-~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~  117 (137)
T d1m6ia2          39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM-GKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLL  117 (137)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT-TTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC-cccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEE
Confidence            48999999999999999975    466899999876542 111221           01  344567788886432   4


Q ss_pred             EEEcCCcEEecCEEEEeccc
Q 037525           61 VVFRNGHTVHADVILHCTGY   80 (182)
Q Consensus        61 v~~~dg~~~~~D~vi~atG~   80 (182)
                      +++.||+++++|.||||||-
T Consensus       118 v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         118 IKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             EEETTSCEEEESEEEECCCE
T ss_pred             EEECCCCEEECCEEEEeecC
Confidence            88889999999999999993

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.07  E-value=1.3e-10  Score=79.50  Aligned_cols=79  Identities=15%  Similarity=0.211  Sum_probs=54.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeCC--Ce---EEE-
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHDN--GA---VVF-   63 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~~--~~---v~~-   63 (182)
                      +|+|||||++|+|+|..|++.+.+|++++|++.... ++.         +... -++..+..++++..+  +.   +.. 
T Consensus        24 ~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~  103 (121)
T d1mo9a2          24 TVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAM  103 (121)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEE
Confidence            589999999999999999999999999999875421 100         0000 134455677777542  21   221 


Q ss_pred             --cCCcEEecCEEEEecc
Q 037525           64 --RNGHTVHADVILHCTG   79 (182)
Q Consensus        64 --~dg~~~~~D~vi~atG   79 (182)
                        .+++++++|.||+|+|
T Consensus       104 ~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2         104 TPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             ETTEEEEEECSCEEECCC
T ss_pred             eCCCCEEEEcCEEEEEEC
Confidence              2355689999999998

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.04  E-value=6.6e-10  Score=76.03  Aligned_cols=79  Identities=11%  Similarity=0.147  Sum_probs=57.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCCC-CeEEcceeEEeeCC-C--eEEEcCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGFD-NMWLHSMIESAHDN-G--AVVFRNG   66 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~~-~i~~~~~v~~~~~~-~--~v~~~dg   66 (182)
                      +++|||+|+.|+|+|..+++.+++|+++.+++.... ++.         +...+ ++..+.+++++..+ +  .+++.++
T Consensus        24 ~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~  103 (119)
T d3lada2          24 KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDA  103 (119)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESS
T ss_pred             eEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEEC
Confidence            589999999999999999999999999999876421 100         00111 34556778887642 2  3566554


Q ss_pred             ---cEEecCEEEEecc
Q 037525           67 ---HTVHADVILHCTG   79 (182)
Q Consensus        67 ---~~~~~D~vi~atG   79 (182)
                         +++++|.|++|+|
T Consensus       104 ~~~~~~~~D~vlvAvG  119 (119)
T d3lada2         104 EGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             SEEEEEEESEEEECSC
T ss_pred             CCCEEEECCEEEEeeC
Confidence               4578999999998

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.02  E-value=4.2e-09  Score=80.78  Aligned_cols=143  Identities=13%  Similarity=0.017  Sum_probs=89.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC----------------------------CCCCCCCC--CCeEE--
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG----------------------------TYEKQPGF--DNMWL--   48 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~----------------------------~~~~~~~~--~~i~~--   48 (182)
                      +|+|||+|+.|++.|..+++.+.+|+++.+.+.+-                            .....+..  ..+..  
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKE  123 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHHH
Confidence            48999999999999999999999999999865420                            00000000  00000  


Q ss_pred             ----------------------c-ceeE------EeeCCCeEEEcCCcEEecCEEEEecccccCCCCCCCCC--------
Q 037525           49 ----------------------H-SMIE------SAHDNGAVVFRNGHTVHADVILHCTGYKYHFPFLETNG--------   91 (182)
Q Consensus        49 ----------------------~-~~v~------~~~~~~~v~~~dg~~~~~D~vi~atG~~~~~~~l~~~~--------   91 (182)
                                            . ....      ++.+.+.+ ..+|+++++|.||+|||.+|+.+.++...        
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~v-~~~g~~i~ad~viiAtG~~P~~~~i~~~~~~~~l~~~  202 (261)
T d1mo9a1         124 VVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTV-EAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKI  202 (261)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEE-EETTEEEEBSCEEECCCEECCCCCSTCEECCHHHHHH
T ss_pred             HHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeeccc-ccccceEeeeeeeeccCCCCCcCcccccccccccccc
Confidence                                  0 0000      11111122 24677899999999999999988776421        


Q ss_pred             -ceecCCCccccccccccCCCCCCCEEEEeccCCc-ccccHHHHHHHHHHHHHcCCC
Q 037525           92 -IVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKV-IPFPLCEYQSKWIAGVLSGQI  146 (182)
Q Consensus        92 -~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~ia~~l~g~~  146 (182)
                       ++++++......-.++-. + .|++|.+|+...+ .....+..|++.+|..+.|+.
T Consensus       203 ~Gl~~~~~G~I~Vn~~~~T-s-~~~IyA~GDv~~~~~l~~~A~~~G~~aa~~i~G~k  257 (261)
T d1mo9a1         203 LGLDLGPKGEVLVNEYLQT-S-VPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEK  257 (261)
T ss_dssp             HTCCBCTTSCBCCCTTSBC-S-STTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTCC
T ss_pred             eeeeeccCCEEEeCCCccc-C-CCCEEEEEEeCCCcccHHHHHHHHHHHHHHHCCCC
Confidence             133332221122222222 4 6999999998643 345678999999999999863

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.01  E-value=6.2e-10  Score=75.90  Aligned_cols=78  Identities=14%  Similarity=0.202  Sum_probs=55.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccC---CeEEEEeccCCCC-CCCC---------CCCC-CCeEEcceeEEeeC--CC--eEE
Q 037525            1 VIILVGSSASAVDICRDLAGVA---KEVHLVSRSVADG-TYEK---------QPGF-DNMWLHSMIESAHD--NG--AVV   62 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a---~~V~l~~r~~~~~-~~~~---------~~~~-~~i~~~~~v~~~~~--~~--~v~   62 (182)
                      +|+|||||+.|+|+|..++..+   .+|+++.|++... .++.         +... -++..+.+++++..  ++  .++
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~  101 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVT  101 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEE
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEE
Confidence            5899999999999998887754   4699999977542 1100         0001 14556678888852  22  478


Q ss_pred             EcCCcEEecCEEEEec
Q 037525           63 FRNGHTVHADVILHCT   78 (182)
Q Consensus        63 ~~dg~~~~~D~vi~at   78 (182)
                      ++||+++++|.||||.
T Consensus       102 ~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2         102 FESGKKMDFDLVMMAI  117 (117)
T ss_dssp             ETTSCEEEESEEEECS
T ss_pred             ECCCcEEEeCEEEEeC
Confidence            8999999999999984

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.99  E-value=1.3e-09  Score=74.95  Aligned_cols=77  Identities=13%  Similarity=0.171  Sum_probs=58.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCC------------CCC-CeEEcceeEEeeCCC--eEEEcC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQP------------GFD-NMWLHSMIESAHDNG--AVVFRN   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~------------~~~-~i~~~~~v~~~~~~~--~v~~~d   65 (182)
                      +|+|||+|..|+|+|..|++.+++|+++.+.+... ...++            ..+ ++..+..++++.+++  ..++.|
T Consensus        32 ~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l-~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~d  110 (123)
T d1nhpa2          32 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPL-GVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTD  110 (123)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-TTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEES
T ss_pred             EEEEECChHHHHHHHHHhhccceEEEEEEecCccc-ccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEEeC
Confidence            58999999999999999999999999999976531 11111            111 345567888887543  345789


Q ss_pred             CcEEecCEEEEec
Q 037525           66 GHTVHADVILHCT   78 (182)
Q Consensus        66 g~~~~~D~vi~at   78 (182)
                      |+++++|.||+|.
T Consensus       111 g~~i~~D~vi~aI  123 (123)
T d1nhpa2         111 KNAYDADLVVVAV  123 (123)
T ss_dssp             SCEEECSEEEECS
T ss_pred             CCEEECCEEEEEC
Confidence            9999999999984

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.91  E-value=4.1e-09  Score=78.25  Aligned_cols=143  Identities=11%  Similarity=0.056  Sum_probs=85.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC----CC-------------------C-----CCCCC-Ce-----
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT----YE-------------------K-----QPGFD-NM-----   46 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~----~~-------------------~-----~~~~~-~i-----   46 (182)
                      +|+|||+|++|+..|..+++.+.+|.++.+++.+--    ..                   .     +.... .+     
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAAM   84 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHHH
Confidence            589999999999999999999999999998654310    00                   0     00000 00     


Q ss_pred             ------------------EEcceeEEee------CCCeEEEc----CCcEEecCEEEEecccc-----cCCCCCCC-CCc
Q 037525           47 ------------------WLHSMIESAH------DNGAVVFR----NGHTVHADVILHCTGYK-----YHFPFLET-NGI   92 (182)
Q Consensus        47 ------------------~~~~~v~~~~------~~~~v~~~----dg~~~~~D~vi~atG~~-----~~~~~l~~-~~~   92 (182)
                                        .....|+-+.      ........    ++..+.+|.||+|||.+     |+++.|.- ..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~l~~~g  164 (221)
T d1dxla1          85 MGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIG  164 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSCCTTTT
T ss_pred             HHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCccCccccCCCCChHhcC
Confidence                              0001122111      11122211    23456899999999954     45554431 234


Q ss_pred             eecCCC-ccccccccccCCCCCCCEEEEeccCCcc-cccHHHHHHHHHHHHHcCCC
Q 037525           93 VTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKVI-PFPLCEYQSKWIAGVLSGQI  146 (182)
Q Consensus        93 ~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~ia~~l~g~~  146 (182)
                      +++++. .+ ....++ .++ .|++|.+|+...++ ....+..+++.+|..|.|+.
T Consensus       165 v~~~~~G~i-~vd~~~-~T~-v~gi~A~GDv~~g~~l~~~A~~~g~~aa~~i~g~~  217 (221)
T d1dxla1         165 VETDKLGRI-LVNERF-STN-VSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKV  217 (221)
T ss_dssp             CCBCSSSCB-CCCTTC-BCS-STTEEECSTTSSSCCCHHHHHHHHHHHHHHHTTSC
T ss_pred             ceEcCCCcE-EeCCCc-ccC-CCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence            444332 22 222322 234 69999999987543 34678899999999999875

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3e-09  Score=73.27  Aligned_cols=79  Identities=15%  Similarity=0.236  Sum_probs=53.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC-CCCC---------CCCC-CCeEEcceeEEeeCC-CeE--EE---
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG-TYEK---------QPGF-DNMWLHSMIESAHDN-GAV--VF---   63 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~-~~~~---------~~~~-~~i~~~~~v~~~~~~-~~v--~~---   63 (182)
                      +|+|||||++|+|+|..+++.+.+|++++|++.+. .++.         +.+. -++..+..++++..+ .++  .+   
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~  103 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTA  103 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEEC
T ss_pred             EEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEc
Confidence            58999999999999999999999999999987542 1110         0001 134445677777531 232  22   


Q ss_pred             cCCc------EEecCEEEEecc
Q 037525           64 RNGH------TVHADVILHCTG   79 (182)
Q Consensus        64 ~dg~------~~~~D~vi~atG   79 (182)
                      .+|.      .+++|.||||||
T Consensus       104 ~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2         104 VPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             CTTSCCEEEEEEEESEEEECSC
T ss_pred             cCCcCcCccccccCCEEEEEeC
Confidence            2332      357999999998

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.83  E-value=4e-09  Score=72.73  Aligned_cols=79  Identities=10%  Similarity=0.164  Sum_probs=54.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCCC-CeEEcceeEEeeCC-C--eEEEcC-
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGFD-NMWLHSMIESAHDN-G--AVVFRN-   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~~-~i~~~~~v~~~~~~-~--~v~~~d-   65 (182)
                      +++|||+|..|+|+|..+++.+.+|+++.+++.... ++.         +...+ ++..+..++++..+ +  .+.+.+ 
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~  107 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGA  107 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeC
Confidence            589999999999999999999999999999875421 110         00111 23445677777531 2  345543 


Q ss_pred             -C--cEEecCEEEEecc
Q 037525           66 -G--HTVHADVILHCTG   79 (182)
Q Consensus        66 -g--~~~~~D~vi~atG   79 (182)
                       |  +++++|.|++|+|
T Consensus       108 ~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2         108 NAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             SCCSSCEEESCEEECCC
T ss_pred             CCCeEEEEcCEEEEecC
Confidence             3  3589999999998

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.83  E-value=7.2e-09  Score=70.29  Aligned_cols=77  Identities=17%  Similarity=0.314  Sum_probs=53.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeCC-C--eEEEc-C
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHDN-G--AVVFR-N   65 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~~-~--~v~~~-d   65 (182)
                      +|+|||||++|+|+|..+++.+.+|++++|++.... ++.         +... -++..+..++++.++ +  .+.+. +
T Consensus        24 ~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~  103 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEAN  103 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEET
T ss_pred             eEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeC
Confidence            589999999999999999999999999999886521 110         0001 145567788888632 2  34443 4


Q ss_pred             Cc--EEecCEEEEe
Q 037525           66 GH--TVHADVILHC   77 (182)
Q Consensus        66 g~--~~~~D~vi~a   77 (182)
                      |+  ++++|.|+++
T Consensus       104 g~~~~i~~D~Vlvs  117 (117)
T d1ebda2         104 GETKTIDADYVLVT  117 (117)
T ss_dssp             TEEEEEEESEEEEC
T ss_pred             CCEEEEEeEEEEEC
Confidence            53  5799999874

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=1.1e-08  Score=70.11  Aligned_cols=77  Identities=14%  Similarity=0.240  Sum_probs=52.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCCC-CeEEcceeEEeeC--CC---eEEEc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGFD-NMWLHSMIESAHD--NG---AVVFR   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~~-~i~~~~~v~~~~~--~~---~v~~~   64 (182)
                      +++|||+|+.|+|+|..|++.+.+|+++.|++.+.. ++.         +...+ ++..+..+++++.  ++   .+++.
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~  104 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVE  104 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEE
T ss_pred             eEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEE
Confidence            589999999999999999999999999999875421 110         00111 4555677777753  22   23444


Q ss_pred             CC-----cEEecCEEEEe
Q 037525           65 NG-----HTVHADVILHC   77 (182)
Q Consensus        65 dg-----~~~~~D~vi~a   77 (182)
                      ++     +++++|.|++|
T Consensus       105 ~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2         105 DTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             ETTTTEEEEEEESEEEEC
T ss_pred             eCCCCCeEEEEeCEEEEC
Confidence            43     25799999986

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=7.2e-09  Score=71.03  Aligned_cols=79  Identities=18%  Similarity=0.259  Sum_probs=51.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCC---------CCCCC-CeEEcceeEEeeC-----CC--eEEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEK---------QPGFD-NMWLHSMIESAHD-----NG--AVVF   63 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~---------~~~~~-~i~~~~~v~~~~~-----~~--~v~~   63 (182)
                      +++|||||+.|+|+|..+++.+.+|+++.|......++.         +...+ ++..+..++++..     +.  .+.+
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~  101 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTA  101 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEE
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEE
Confidence            689999999999999999999999999987532221110         00000 3444556666531     11  2344


Q ss_pred             cC---Cc--EEecCEEEEecc
Q 037525           64 RN---GH--TVHADVILHCTG   79 (182)
Q Consensus        64 ~d---g~--~~~~D~vi~atG   79 (182)
                      .+   ++  ..++|.|++|+|
T Consensus       102 ~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2         102 KSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             ECTTSCEEEEEEESEEECCCC
T ss_pred             EECCCCcEEEEECCEEEEEeC
Confidence            33   22  347999999998

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.74  E-value=1e-08  Score=73.07  Aligned_cols=34  Identities=26%  Similarity=0.328  Sum_probs=30.1

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~~~   34 (182)
                      +|+|||||+||+|.|..+.+. |++|++++|++..
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            589999999999999998886 7889999998654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.73  E-value=1.5e-07  Score=69.76  Aligned_cols=144  Identities=11%  Similarity=0.042  Sum_probs=83.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC-------------------------CCCC--C--CC-CCCCeE---
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD-------------------------GTYE--K--QP-GFDNMW---   47 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~-------------------------~~~~--~--~~-~~~~i~---   47 (182)
                      +|+|||+|+.|++.|..+++.+.+|+++.++..-                         ....  .  .. ......   
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   86 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDIGQ   86 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehHHH
Confidence            5899999999999999999999999999875310                         0000  0  00 000000   


Q ss_pred             --------------------EcceeEEeeCC-----CeEEEcCCcEEecCEEEEecccccCCC-CCC---CCC----cee
Q 037525           48 --------------------LHSMIESAHDN-----GAVVFRNGHTVHADVILHCTGYKYHFP-FLE---TNG----IVT   94 (182)
Q Consensus        48 --------------------~~~~v~~~~~~-----~~v~~~dg~~~~~D~vi~atG~~~~~~-~l~---~~~----~~~   94 (182)
                                          ....+.-+.+.     ....-.++..+.+|.||+|||.+|..+ ...   ...    .+.
T Consensus        87 ~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~~~~~~i~a~~viiAtG~~p~~lp~~~~~~~~~~~~~~~~  166 (220)
T d1lvla1          87 SVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLK  166 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCEEECCBTEEECCSSSSGGGSCCC
T ss_pred             HhhhheeEEeeeccchhhhhccCceEEEEeeecccCcccccccceeEeeceeeEcCCCCcccccccccccCCcceeeehh
Confidence                                00112222111     011122455789999999999988532 111   110    111


Q ss_pred             cCCCccccccccccCCCCCCCEEEEeccCCcc-cccHHHHHHHHHHHHHcCCCC
Q 037525           95 MDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVI-PFPLCEYQSKWIAGVLSGQIV  147 (182)
Q Consensus        95 ~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~ia~~l~g~~~  147 (182)
                      .+++.+ ..-.++.. + .|++|.+|+....+ ..+.+..|++.+|..+.|+.+
T Consensus       167 ~~~g~i-~vd~~~~T-~-~~~I~A~GDv~~~~~l~~~a~~~g~~~a~~i~G~~~  217 (220)
T d1lvla1         167 MNGAAI-AIDERCQT-S-MHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKAR  217 (220)
T ss_dssp             EETTEE-CCCTTCBC-S-STTEEECGGGGCSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             hcCCcc-cccchhhc-C-CCCEEEEEEeCCcccchhhhhhhHHHHHHHHcCCCC
Confidence            222322 22222222 3 69999999987543 456788999999999998754

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.67  E-value=3.2e-08  Score=67.72  Aligned_cols=78  Identities=13%  Similarity=0.213  Sum_probs=54.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-CCC---------CCCC-CCeEEcceeEEeeCC-Ce--EEEc--
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-YEK---------QPGF-DNMWLHSMIESAHDN-GA--VVFR--   64 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~~---------~~~~-~~i~~~~~v~~~~~~-~~--v~~~--   64 (182)
                      +++|||+|..|+|+|..+++.+.+|++++|++.+.. .+.         +.+. -++..+..++++..+ ++  +.+.  
T Consensus        27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~  106 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPS  106 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEES
T ss_pred             eEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEEC
Confidence            589999999999999999999999999999876521 100         0011 145667788888642 22  3332  


Q ss_pred             -CCc--EEecCEEEEec
Q 037525           65 -NGH--TVHADVILHCT   78 (182)
Q Consensus        65 -dg~--~~~~D~vi~at   78 (182)
                       +|+  .+++|.|++|.
T Consensus       107 ~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2         107 AGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             SSCCCEEEEESEEECCC
T ss_pred             CCCeEEEEEcCEEEEcC
Confidence             333  47999999874

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.66  E-value=2.3e-07  Score=67.65  Aligned_cols=121  Identities=17%  Similarity=0.148  Sum_probs=68.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCC-----------CCCCCCCC-------------------CeE-Ec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGT-----------YEKQPGFD-------------------NMW-LH   49 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-----------~~~~~~~~-------------------~i~-~~   49 (182)
                      +|+|||||++|++.|..+++.+.+|.++.+......           ....++.+                   .+. ..
T Consensus         7 ~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i~~   86 (192)
T d1vdca1           7 RLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIFT   86 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcceeee
Confidence            599999999999999999999999999986543210           00111111                   011 11


Q ss_pred             ceeEEeeCC-CeEE-EcCCcEEecCEEEEecccc-----cCCCCCCCCCceecCCCccccccccccCCCCCCCEEEEecc
Q 037525           50 SMIESAHDN-GAVV-FRNGHTVHADVILHCTGYK-----YHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLP  122 (182)
Q Consensus        50 ~~v~~~~~~-~~v~-~~dg~~~~~D~vi~atG~~-----~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~  122 (182)
                      ..|.++... +... ..+.....+|.+++++|..     |+..++..  .++++++.....-.+.+..+ .|++|..|+.
T Consensus        87 ~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~--~veld~~G~i~~~~~~~~Ts-~~GV~a~GDv  163 (192)
T d1vdca1          87 ETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPATKFLDG--GVELDSDGYVVTKPGTTQTS-VPGVFAAGDV  163 (192)
T ss_dssp             CCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCEEESCGGGTT--SSCBCTTSCBCCCTTSCBCS-STTEEECGGG
T ss_pred             eeEEecccccCcEEecccceeeeeeeEEEEeeeeecccCchHHHhcC--ceeecCCCeEEeCCCceEec-CCCEEEeeec
Confidence            233344321 1222 2334456899999999964     44555543  23433322111111222334 6999999987


Q ss_pred             CC
Q 037525          123 WK  124 (182)
Q Consensus       123 ~~  124 (182)
                      ..
T Consensus       164 ~~  165 (192)
T d1vdca1         164 QD  165 (192)
T ss_dssp             GC
T ss_pred             CC
Confidence            64

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.62  E-value=8e-07  Score=65.33  Aligned_cols=143  Identities=15%  Similarity=0.082  Sum_probs=85.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC-----C-------------------CCCCC---CCCCCe-------
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD-----G-------------------TYEKQ---PGFDNM-------   46 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~-----~-------------------~~~~~---~~~~~i-------   46 (182)
                      +|+|||+|+.|++.|..+++...+|.++.+...-     .                   .....   .....+       
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQE   84 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHhh
Confidence            5899999999999999999999999999876420     0                   00000   000000       


Q ss_pred             ----------------EEcceeE------EeeCCCe--EEEcC-CcEEecCEEEEec--------ccccCCCCCCC-CCc
Q 037525           47 ----------------WLHSMIE------SAHDNGA--VVFRN-GHTVHADVILHCT--------GYKYHFPFLET-NGI   92 (182)
Q Consensus        47 ----------------~~~~~v~------~~~~~~~--v~~~d-g~~~~~D~vi~at--------G~~~~~~~l~~-~~~   92 (182)
                                      .....|+      ++.....  +...+ +..+..|.+|+|+        |..|+++.|.- ..+
T Consensus        85 ~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~l~~~g  164 (223)
T d1ebda1          85 WKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIG  164 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSSTTTTT
T ss_pred             HHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceeccccceEEecccEEEEcCCCccccccceecCCCCChHhcC
Confidence                            0001111      1221112  22222 3356789999986        77777765532 234


Q ss_pred             eecCCC-ccccccccccCCCCCCCEEEEeccCCcc-cccHHHHHHHHHHHHHcCCC
Q 037525           93 VTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKVI-PFPLCEYQSKWIAGVLSGQI  146 (182)
Q Consensus        93 ~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~ia~~l~g~~  146 (182)
                      +++++. .+ ....++- ++ .|++|.+|+...+. ....+..|++.+|..+.|+.
T Consensus       165 v~~~~~G~I-~vd~~~~-T~-~~gvyA~GDv~~~~~~~~~A~~~g~~aa~~i~g~~  217 (223)
T d1ebda1         165 IKMTNRGLI-EVDQQCR-TS-VPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGHP  217 (223)
T ss_dssp             CCBCTTSCB-CCCTTCB-CS-STTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSCC
T ss_pred             ceECCCCCE-eECCCCC-CC-CCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence            555433 33 3333332 24 79999999987543 34678899999999999864

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=6.5e-07  Score=64.84  Aligned_cols=120  Identities=13%  Similarity=0.169  Sum_probs=67.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC---C---CCCCCCCC-------------------Ce-EEcceeEE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG---T---YEKQPGFD-------------------NM-WLHSMIES   54 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~---~---~~~~~~~~-------------------~i-~~~~~v~~   54 (182)
                      +|+||||||+|++.|..+++.+.+|+++++.....   .   ....+..+                   .+ .....|++
T Consensus         7 dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~   86 (190)
T d1trba1           7 KLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINK   86 (190)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCCEEE
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecceeEE
Confidence            58999999999999999999999999998764321   0   00111100                   11 11233444


Q ss_pred             eeCC-CeEEE-cCCcEEecCEEEEecccccC-----CCCCCCCCceecCCCccccccc----cccCCCCCCCEEEEeccC
Q 037525           55 AHDN-GAVVF-RNGHTVHADVILHCTGYKYH-----FPFLETNGIVTMDDNRVGPLYK----HVFPPVLAPWLSFVGLPW  123 (182)
Q Consensus        55 ~~~~-~~v~~-~dg~~~~~D~vi~atG~~~~-----~~~l~~~~~~~~~~~~~~~ly~----~~~~~~~~p~l~~iG~~~  123 (182)
                      +... +..++ .....+++|.+|++||..+.     ..++...  ++++++.+ ....    ..+-.+ .|++|..|+..
T Consensus        87 ~~~~~~~~~v~~~~~~~~~~~viva~G~~~~~~~~~~~~~~~~--~e~~~g~i-~~~~~~~~~~~~T~-v~gV~aaGDv~  162 (190)
T d1trba1          87 VDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAIFEGQ--LELENGYI-KVQSGIHGNATQTS-IPGVFAAGDVM  162 (190)
T ss_dssp             EECSSSSEEEEESSCEEEEEEEEECCCEEECCEEESCGGGTTT--SCEETTEE-CCCCSSSSCTTBCS-STTEEECGGGG
T ss_pred             EecCCCcEEEEEeeeeEeeeeeeeecceeeeeecccceeecce--EecCCcEE-EEecCCcccccccc-cCeEEEeEEec
Confidence            4322 22222 23446789999999997654     2333321  22222222 1111    112234 79999999875


Q ss_pred             C
Q 037525          124 K  124 (182)
Q Consensus       124 ~  124 (182)
                      .
T Consensus       163 ~  163 (190)
T d1trba1         163 D  163 (190)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=8.9e-08  Score=67.97  Aligned_cols=25  Identities=12%  Similarity=0.231  Sum_probs=22.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeE
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEV   25 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V   25 (182)
                      +|+|||||++|+|+|..+++.+.++
T Consensus        31 rVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          31 KVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             EEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             ceEEEcCchhHHHHHHHHHHcCCcc
Confidence            5999999999999999999976543

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.44  E-value=1.9e-06  Score=63.18  Aligned_cols=32  Identities=13%  Similarity=0.195  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+..|..+++..++|.++.+..
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            58999999999999999999999999998754

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.38  E-value=2.7e-06  Score=63.58  Aligned_cols=85  Identities=15%  Similarity=0.017  Sum_probs=54.0

Q ss_pred             EcCCc--EEecCEEEEecccccCCCCCC------CC----CceecCCCccccccccccCCCCCCCEEEEeccCCcc-ccc
Q 037525           63 FRNGH--TVHADVILHCTGYKYHFPFLE------TN----GIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVI-PFP  129 (182)
Q Consensus        63 ~~dg~--~~~~D~vi~atG~~~~~~~l~------~~----~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~-~~~  129 (182)
                      ..||+  ++++|.||+|||..+..+...      ..    ..+++++........++- ++ .|++|.+|++.... ..+
T Consensus       134 ~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~-T~-~~gIyA~GDv~~~~~l~~  211 (233)
T d1xdia1         134 AADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQLGRGNYLTVDRVSR-TL-ATGIYAAGDCTGLLPLAS  211 (233)
T ss_dssp             CTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCCCBTTTBCCCCSSSB-CS-STTEEECSGGGTSCSCHH
T ss_pred             ecCCceeeeecceeeeecCcccccccccccccccccccchhhhcccCCCcCCcCCCcc-cC-CCCEEEEEEeCCCchhHH
Confidence            34665  468999999999988643221      10    112233222112333322 24 69999999986433 345


Q ss_pred             HHHHHHHHHHHHHcCCCCCC
Q 037525          130 LCEYQSKWIAGVLSGQIVLP  149 (182)
Q Consensus       130 ~~e~qa~~ia~~l~g~~~lP  149 (182)
                      .+..|++.+|..+.|+..-|
T Consensus       212 ~A~~~g~~aa~~~~g~~~~p  231 (233)
T d1xdia1         212 VAAMQGRIAMYHALGEGVSP  231 (233)
T ss_dssp             HHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCCCC
Confidence            88999999999999887655

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=2.4e-06  Score=60.99  Aligned_cols=31  Identities=16%  Similarity=0.172  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||||++|++.|..+++.+.+|.+++++
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            4899999999999999999999999999875

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.28  E-value=3e-06  Score=63.96  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=30.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+-.|..|++...+|.++++.+.
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            599999999999999999999999999998753

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.1e-05  Score=59.18  Aligned_cols=141  Identities=16%  Similarity=0.134  Sum_probs=82.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC------C-------------------CCC-CCCCC-CCe-------
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD------G-------------------TYE-KQPGF-DNM-------   46 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~------~-------------------~~~-~~~~~-~~i-------   46 (182)
                      +|+|||+|+.|++.|..+++..++|.++.+...-      .                   ... ..+.. ..+       
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE   84 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence            5899999999999999999999999999864310      0                   000 00000 000       


Q ss_pred             ----------------EEcceeEEeeCC------CeEEEc-CCcEEecCEEEEecccccCCCCCC-----C----CCcee
Q 037525           47 ----------------WLHSMIESAHDN------GAVVFR-NGHTVHADVILHCTGYKYHFPFLE-----T----NGIVT   94 (182)
Q Consensus        47 ----------------~~~~~v~~~~~~------~~v~~~-dg~~~~~D~vi~atG~~~~~~~l~-----~----~~~~~   94 (182)
                                      .....|+-+.+.      ..++.. +...+..|.++++||..|..|...     .    ..++.
T Consensus        85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L~~~gv~  164 (221)
T d3grsa1          85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQ  164 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETTEEEECSCEEECCCEEECCCCTEEESCTTTTGGGTTCC
T ss_pred             hhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeeccccccceeEEecCccccCCCccccCCCCcCchhcCcE
Confidence                            001123223221      122222 334568899999999887654321     0    01223


Q ss_pred             cCC-Ccc-ccccccccCCCCCCCEEEEeccCCcc-cccHHHHHHHHHHHHHcCC
Q 037525           95 MDD-NRV-GPLYKHVFPPVLAPWLSFVGLPWKVI-PFPLCEYQSKWIAGVLSGQ  145 (182)
Q Consensus        95 ~~~-~~~-~~ly~~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~ia~~l~g~  145 (182)
                      +++ +.+ ..-|..+   + .|++|.+|+....+ ..+.+..|++.+|..+-+.
T Consensus       165 ~~~~G~I~vd~~~~T---~-~~gvyA~GDv~~~~~l~~~A~~~G~~aa~~~~~~  214 (221)
T d3grsa1         165 TDDKGHIIVDEFQNT---N-VKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEY  214 (221)
T ss_dssp             BCTTSCBCCCTTCBC---S-STTEEECGGGGTSSCCHHHHHHHHHHHHHHHHSC
T ss_pred             ECCCccEEeCCCccc---c-CCcEEEEEEccCCcCcHHHHHHHHHHHHHHHcCC
Confidence            322 222 1233333   4 79999999986543 4567899999999877653

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.28  E-value=1.4e-06  Score=64.87  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHh---------------------ccCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLA---------------------GVAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~---------------------~~a~~V~l~~r~~~~   34 (182)
                      +|+|||+||.|+|+|..|+                     ..+++|+++.|+.+.
T Consensus        41 ~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~   95 (216)
T d1lqta1          41 RAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL   95 (216)
T ss_dssp             EEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             eEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChH
Confidence            5899999999999998886                     257789999998753

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=1.3e-06  Score=63.40  Aligned_cols=34  Identities=15%  Similarity=0.221  Sum_probs=31.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~   34 (182)
                      +|+|||+|++|++.|..|++.+.+|+++.+.+..
T Consensus        45 ~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          45 NLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             EEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            5999999999999999999999999999987643

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.13  E-value=4.3e-06  Score=62.59  Aligned_cols=32  Identities=28%  Similarity=0.300  Sum_probs=30.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      ||+|||+|++|+-.|..|++.+.+|++++|++
T Consensus         6 kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           6 RIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            69999999999999999999999999999864

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=1.2e-05  Score=58.78  Aligned_cols=32  Identities=13%  Similarity=0.163  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+..|..+++.+.+|.++.++.
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            48999999999999999999999999998753

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.07  E-value=7.4e-05  Score=55.04  Aligned_cols=33  Identities=15%  Similarity=0.212  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|+.|+..|..+++...+|.++.+.+.
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~   40 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT   40 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            489999999999999999999999999997654

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.06  E-value=1.1e-05  Score=60.53  Aligned_cols=80  Identities=18%  Similarity=0.221  Sum_probs=54.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC-CCC----C--C-------------CCC--------------CCCCe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA-DGT----Y--E-------------KQP--------------GFDNM   46 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~-~~~----~--~-------------~~~--------------~~~~i   46 (182)
                      +|+|||+|++|+|.|...++...+|.|+..... .-.    +  .             .-+              ..+++
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL   83 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL   83 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence            599999999999999999999999999976421 100    0  0             000              11234


Q ss_pred             EEc-ceeEEee-CCC---eEEEcCCcEEecCEEEEeccc
Q 037525           47 WLH-SMIESAH-DNG---AVVFRNGHTVHADVILHCTGY   80 (182)
Q Consensus        47 ~~~-~~v~~~~-~~~---~v~~~dg~~~~~D~vi~atG~   80 (182)
                      .+. ..|..+. +++   +|++.+|.++.+..||+|||-
T Consensus        84 ~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGT  122 (230)
T d2cula1          84 HLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGS  122 (230)
T ss_dssp             EEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred             HHHhccceeeEecccceeeEEeccccEEEEeEEEEccCc
Confidence            332 3344432 222   577889999999999999996

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.04  E-value=0.00013  Score=53.65  Aligned_cols=32  Identities=16%  Similarity=0.336  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|+.|+..|..+++...+|.++.+.+
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            48999999999999999999999999998654

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.00  E-value=6e-05  Score=55.84  Aligned_cols=78  Identities=13%  Similarity=0.011  Sum_probs=51.0

Q ss_pred             EEecCEEEEecccccCCCCCC-----C----CCceecCC-CccccccccccCCCCCCCEEEEeccCCcc-cccHHHHHHH
Q 037525           68 TVHADVILHCTGYKYHFPFLE-----T----NGIVTMDD-NRVGPLYKHVFPPVLAPWLSFVGLPWKVI-PFPLCEYQSK  136 (182)
Q Consensus        68 ~~~~D~vi~atG~~~~~~~l~-----~----~~~~~~~~-~~~~~ly~~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~  136 (182)
                      .++.|.|+++||..+...-+.     .    ...+.+++ +.+ ....++.. + .|++|.+|+..... ..+.+..|++
T Consensus       149 ~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I-~vd~~~~T-s-~~~iyA~GDv~~~~~~~~~A~~eg~  225 (240)
T d1feca1         149 TLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAI-KVDAYSKT-N-VDNIYAIGDVTDRVMLTPVAINEGA  225 (240)
T ss_dssp             EEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCB-CCCTTCBC-S-STTEEECGGGGCSCCCHHHHHHHHH
T ss_pred             EEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcE-EcCcccCc-C-CCCEEEEEECCCCccchhhHHHHHH
Confidence            467899999999988643221     0    01233433 233 33344433 4 69999999986433 3568899999


Q ss_pred             HHHHHHcCCCCC
Q 037525          137 WIAGVLSGQIVL  148 (182)
Q Consensus       137 ~ia~~l~g~~~l  148 (182)
                      .+|..+-|..+.
T Consensus       226 ~aa~~~~~~~~~  237 (240)
T d1feca1         226 AFVDTVFANKPR  237 (240)
T ss_dssp             HHHHHHHSSCCC
T ss_pred             HHHHHHhCCCCC
Confidence            999998876554

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=97.96  E-value=1.2e-05  Score=59.80  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+-.|..|++.+.+|.++++++.
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            599999999999999999999999999998653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.83  E-value=7.1e-06  Score=58.87  Aligned_cols=34  Identities=15%  Similarity=0.259  Sum_probs=30.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC-eEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAK-EVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~-~V~l~~r~~~~   34 (182)
                      ||+|||+|++|++.|..|++.+. .|++++|++..
T Consensus         6 kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           6 KIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             EEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            79999999999999999999875 69999998754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.75  E-value=5.8e-06  Score=61.69  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=31.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~   34 (182)
                      +|+|||+|++|+..|..|++.+.+|+++.+++..
T Consensus        51 ~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          51 SVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             eEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence            5899999999999999999999999999987643

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.61  E-value=2.2e-05  Score=54.86  Aligned_cols=84  Identities=11%  Similarity=-0.007  Sum_probs=53.3

Q ss_pred             EEEE--cCCccHHHHHHHHhccCCeEEEEeccCCCCC-CC---------CCCCC-CCeEEcceeEEeeCCCeEEEcCCcE
Q 037525            2 IILV--GSSASAVDICRDLAGVAKEVHLVSRSVADGT-YE---------KQPGF-DNMWLHSMIESAHDNGAVVFRNGHT   68 (182)
Q Consensus         2 V~VV--G~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~-~~---------~~~~~-~~i~~~~~v~~~~~~~~v~~~dg~~   68 (182)
                      |+|+  |||..|+|+|..|++.+++|+++.+.+.... ..         .+... -++..+..+.++.++ ++.+.+...
T Consensus        42 vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-~v~l~~~~~  120 (156)
T d1djqa2          42 VVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPG-RMEIYNIWG  120 (156)
T ss_dssp             EEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTTCHHHHHHHHHHTTCEEEETEEEEEEETT-EEEEEETTC
T ss_pred             eEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccchhHHHHHHHHHhhccceEEeccEEEEecCc-ceEEEeeec
Confidence            4444  9999999999999999999999998764310 00         00001 134456777788653 666655444


Q ss_pred             EecCEEEEecccccCCCC
Q 037525           69 VHADVILHCTGYKYHFPF   86 (182)
Q Consensus        69 ~~~D~vi~atG~~~~~~~   86 (182)
                      .+.|.++.++|..++...
T Consensus       121 ~~~~~v~~~~g~~~~~~~  138 (156)
T d1djqa2         121 DGSKRTYRGPGVSPRDAN  138 (156)
T ss_dssp             SCSCCCCCCTTSCSSCCC
T ss_pred             cccceeeeeeEEEecccC
Confidence            445555566665555443

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.55  E-value=2.5e-05  Score=58.23  Aligned_cols=34  Identities=26%  Similarity=0.352  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhc---------------------cCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAG---------------------VAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~---------------------~a~~V~l~~r~~~~   34 (182)
                      +|+|||+||.|+|+|..+.+                     .+++|+++.|+++.
T Consensus        41 ~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~   95 (225)
T d1cjca1          41 TAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL   95 (225)
T ss_dssp             EEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             eEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence            58999999999999999998                     56899999998753

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.37  E-value=6.5e-05  Score=54.46  Aligned_cols=32  Identities=16%  Similarity=0.381  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|+|||+|++|+-.|..|++.+ ++|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            6999999999999999999988 5799998764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.26  E-value=0.0001  Score=54.72  Aligned_cols=32  Identities=19%  Similarity=0.335  Sum_probs=30.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            69999999999999999999999999999864

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.25  E-value=0.00011  Score=54.65  Aligned_cols=32  Identities=13%  Similarity=0.147  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      ||+|||+|++|+-.|.+|++.+.+|+++++++
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            69999999999999999999999999999764

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.00011  Score=52.92  Aligned_cols=33  Identities=15%  Similarity=0.177  Sum_probs=30.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|.+|+=.|..|++.+.+|+++++++.
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            589999999999999999999999999999764

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.22  E-value=0.0062  Score=43.90  Aligned_cols=77  Identities=14%  Similarity=0.112  Sum_probs=49.0

Q ss_pred             EEecCEEEEecccccCCCCCCC---------CCceecCCCccccccccccCCCCCCCEEEEeccCCcc-cccHHHHHHHH
Q 037525           68 TVHADVILHCTGYKYHFPFLET---------NGIVTMDDNRVGPLYKHVFPPVLAPWLSFVGLPWKVI-PFPLCEYQSKW  137 (182)
Q Consensus        68 ~~~~D~vi~atG~~~~~~~l~~---------~~~~~~~~~~~~~ly~~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~  137 (182)
                      .++.|.|++++|..+.......         ...+.++++.+ ...+.+-. + .|++|.+|+..... ..+.+..+++.
T Consensus       149 ~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~~G~I-~vde~~~T-~-~~~iyAvGDv~~~~~l~~~A~~eg~~  225 (238)
T d1aoga1         149 RLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIKNGGV-QVDEYSRT-N-VSNIYAIGDVTNRVMLTPVAINEAAA  225 (238)
T ss_dssp             EEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEETTEE-CCCTTCBC-S-STTEEECGGGGTSCCCHHHHHHHHHH
T ss_pred             cccccceeeecccccccccccccceeeecccccEEEEcCCeE-EecCCeee-c-cCCEEEEEEecCCccchhhHHHHHHH
Confidence            4678999999888876443210         01233333333 22222222 3 69999999987543 35679999999


Q ss_pred             HHHHHcCCCC
Q 037525          138 IAGVLSGQIV  147 (182)
Q Consensus       138 ia~~l~g~~~  147 (182)
                      +|..+-|..+
T Consensus       226 aa~~i~g~~~  235 (238)
T d1aoga1         226 LVDTVFGTTP  235 (238)
T ss_dssp             HHHHHHSSSC
T ss_pred             HHHHHcCCCC
Confidence            9999988654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00018  Score=54.01  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=30.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      ||+|||+|.||+-.|.+|++.+.+|+++++++.
T Consensus         7 kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           7 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR   39 (449)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            599999999999999999999999999998654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=97.05  E-value=0.00017  Score=54.62  Aligned_cols=32  Identities=22%  Similarity=0.409  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++++++
T Consensus        32 kV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          32 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             EEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            59999999999999999999999999998754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00025  Score=54.55  Aligned_cols=34  Identities=21%  Similarity=0.223  Sum_probs=30.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~   34 (182)
                      +|+|||+|.||+=+|..|++.+.+|+++.+++..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~i   36 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCc
Confidence            4899999999999999999998999999987643

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.96  E-value=0.00031  Score=54.47  Aligned_cols=34  Identities=29%  Similarity=0.402  Sum_probs=31.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~   34 (182)
                      +|+|||+|.||+=+|..|++.+.+|+++++++..
T Consensus         4 KI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~i   37 (314)
T d2bi7a1           4 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   37 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence            5899999999999999999998999999987653

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.95  E-value=0.00029  Score=51.64  Aligned_cols=32  Identities=22%  Similarity=0.368  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|..|++...+|++++|+.
T Consensus         8 kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           8 RVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            59999999999999999999988999999864

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.0004  Score=50.55  Aligned_cols=33  Identities=9%  Similarity=0.128  Sum_probs=30.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|..+++...+|.++.+++.
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            489999999999999999999999999997654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.81  E-value=0.00037  Score=52.59  Aligned_cols=32  Identities=13%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+=+|..|++.+.+|.++++++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            59999999999999999999999999999875

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00054  Score=52.10  Aligned_cols=32  Identities=16%  Similarity=0.216  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|..|++.+.+|+++++++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            59999999999999999999999999998754

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.69  E-value=0.00055  Score=50.02  Aligned_cols=33  Identities=18%  Similarity=0.268  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~   33 (182)
                      ||+|||+|++|+..|..|++.  ..+|+++.+.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            699999999999999999764  558999988764

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.66  E-value=0.00041  Score=50.64  Aligned_cols=33  Identities=27%  Similarity=0.244  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-------CeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-------KEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-------~~V~l~~r~~~   33 (182)
                      +|+|||+|+||+..|.+|++.+       -+|+++.+.+.
T Consensus         4 ~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           4 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            6999999999999999999865       37999998764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.65  E-value=0.0007  Score=50.10  Aligned_cols=34  Identities=18%  Similarity=0.231  Sum_probs=30.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccCCC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSVAD   34 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~~~   34 (182)
                      +|+|||+|++|+=.|..|++.+ .+|+++.|++..
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            5999999999999999999988 589999987653

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.63  E-value=0.00057  Score=50.99  Aligned_cols=32  Identities=19%  Similarity=0.211  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=+|.+|++.+.+|+++.+..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999864

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=96.56  E-value=0.00085  Score=50.61  Aligned_cols=33  Identities=15%  Similarity=0.403  Sum_probs=29.5

Q ss_pred             CEEEEcCCccHHHHHHHHhc-cCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAG-VAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~-~a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+-.|..|++ .+.+|+++++++.
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            48999999999999999987 5889999998763

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=96.46  E-value=0.001  Score=50.41  Aligned_cols=32  Identities=9%  Similarity=0.375  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=+|.+|++.. ++|+|+.|+.
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            6999999999999999999987 5799999864

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=96.37  E-value=0.0011  Score=49.62  Aligned_cols=32  Identities=22%  Similarity=0.198  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-+|.+|++.+.+|.++.++.
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            48999999999999999999999999999864

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.36  E-value=0.0012  Score=50.12  Aligned_cols=32  Identities=16%  Similarity=0.289  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|.+|++.+.+|.|+++.+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            59999999999999999999999999999865

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=96.21  E-value=0.0017  Score=49.72  Aligned_cols=32  Identities=13%  Similarity=0.295  Sum_probs=29.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|.+|++.+.+|.++.+.+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999864

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=96.10  E-value=0.0022  Score=49.19  Aligned_cols=32  Identities=6%  Similarity=0.022  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+=.|.++++.+.+|.++.+.+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            59999999999999999999988999998743

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.09  E-value=0.0023  Score=47.63  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|...|..+++.+.+|.++.+..
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            58999999999999999999999999999753

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=96.06  E-value=0.0021  Score=49.57  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|.=+|..|++.+.+|.+++++.
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~   37 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGE   37 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecCC
Confidence            48999999999999999999999999999874

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=96.00  E-value=0.0021  Score=50.00  Aligned_cols=32  Identities=13%  Similarity=0.141  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      .|+|||+|.+|.-+|..|++.+.+|.+++++.
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            48999999999999999999989999999863

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.0021  Score=44.14  Aligned_cols=31  Identities=23%  Similarity=0.289  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||||+.|.+-|..|.+.+.+|+++...
T Consensus        15 rvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          15 RILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             EEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5899999999999999999999999999754

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=95.95  E-value=0.0029  Score=49.12  Aligned_cols=32  Identities=9%  Similarity=0.130  Sum_probs=29.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      .|+|||+|..|.=+|..|++...+|.+++++.
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            48999999999999999999999999999964

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.83  E-value=0.003  Score=49.99  Aligned_cols=33  Identities=18%  Similarity=0.332  Sum_probs=28.8

Q ss_pred             CEEEEcCCccHHHHHHHHhc------cCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAG------VAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~------~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|.-.|..|++      ..-+|.|+.|+..
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~   72 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   72 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence            59999999999999999997      5668999998753

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=95.81  E-value=0.0024  Score=48.90  Aligned_cols=32  Identities=16%  Similarity=0.304  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|.++++.+.+|.++.+.+
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            48999999999999999999999999998764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.77  E-value=0.0038  Score=40.76  Aligned_cols=31  Identities=16%  Similarity=0.158  Sum_probs=28.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|.+|..-|..|.+.+.+|+++...
T Consensus        14 ~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          14 DCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            5899999999999999999998899998653

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.0046  Score=38.91  Aligned_cols=72  Identities=13%  Similarity=0.194  Sum_probs=47.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCCCCCeEEcceeEEeeCCCeEEEcC-Cc-EE-ecCEEEEe
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRN-GH-TV-HADVILHC   77 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~~~~i~~~~~v~~~~~~~~v~~~d-g~-~~-~~D~vi~a   77 (182)
                      +|+|+|.|-||+-+|..|++.+.+|+++..+........+.               +...+.+.. .+ .+ .+|.||++
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~d~vi~S   71 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP---------------EAVERHTGSLNDEWLMAADLIVAS   71 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSC---------------TTSCEEESBCCHHHHHHCSEEEEC
T ss_pred             EEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHh---------------hccceeecccchhhhccCCEEEEC
Confidence            69999999999999999999999999998765432111111               001111111 11 12 58999999


Q ss_pred             cccccCCCCC
Q 037525           78 TGYKYHFPFL   87 (182)
Q Consensus        78 tG~~~~~~~l   87 (182)
                      .|..++.+++
T Consensus        72 PGi~~~~~~~   81 (93)
T d2jfga1          72 PGIALAHPSL   81 (93)
T ss_dssp             TTSCTTSHHH
T ss_pred             CCCCCCCHHH
Confidence            9987765543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=95.63  E-value=0.0042  Score=47.36  Aligned_cols=33  Identities=15%  Similarity=0.338  Sum_probs=28.4

Q ss_pred             CEEEEcCCccHHHHHHHHhc-----cCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAG-----VAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~-----~a~~V~l~~r~~~   33 (182)
                      +|+|||||++|+=+|..|++     .+-+|++++|++.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            48999999999999999974     4568999998764

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.60  E-value=0.0043  Score=47.35  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=28.9

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~~   33 (182)
                      +|+|||+|++|+..|..|++.  ..+|+++.+.+.
T Consensus        52 ~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          52 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            589999999999999999964  678999998754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.50  E-value=0.0069  Score=41.76  Aligned_cols=32  Identities=16%  Similarity=0.256  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|..|.-+|..|++...+|+++.|..
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            58999999999999999999988999999864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.0057  Score=41.93  Aligned_cols=33  Identities=21%  Similarity=0.080  Sum_probs=30.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      ||+|||+|+.|.=+|..|++.+.+|+++.|++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            699999999999999999999999999998653

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=0.0038  Score=48.09  Aligned_cols=32  Identities=9%  Similarity=0.283  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+-.|.++++.+.+|.++.+.+
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~   40 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF   40 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            58999999999999999999988999998754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.13  E-value=0.006  Score=42.51  Aligned_cols=32  Identities=13%  Similarity=0.026  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|+.|.-+|..|++.+.+|++..|++
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999864

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=95.10  E-value=0.0071  Score=47.18  Aligned_cols=32  Identities=25%  Similarity=0.344  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +++|||+|.+|.=+|..|++..++|.++++++
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            48999999999999999999989999999874

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.013  Score=44.17  Aligned_cols=31  Identities=23%  Similarity=0.425  Sum_probs=27.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|.++++.+ +|.++...+
T Consensus         9 DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~   39 (305)
T d1chua2           9 DVLIIGSGAAGLSLALRLADQH-QVIVLSKGP   39 (305)
T ss_dssp             SEEEECCSHHHHHHHHHHTTTS-CEEEECSSC
T ss_pred             CEEEECccHHHHHHHHHhhcCC-CEEEEECCC
Confidence            5999999999999999998877 799998754

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.48  E-value=0.015  Score=44.57  Aligned_cols=32  Identities=22%  Similarity=0.277  Sum_probs=26.9

Q ss_pred             CEEEEcCCccHHHHHHHHhc----cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG----VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~----~a~~V~l~~r~~   32 (182)
                      +|+|||+|++|+=.|.++++    .+.+|.++.+..
T Consensus        23 DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~   58 (356)
T d1jnra2          23 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   58 (356)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence            58999999999999999875    456899998753

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=94.38  E-value=0.014  Score=45.27  Aligned_cols=31  Identities=19%  Similarity=0.319  Sum_probs=27.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +++|||+|.+|.=+|..|++. .+|.|+++++
T Consensus        28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             cEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            379999999999999999986 7899999885

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=94.36  E-value=0.015  Score=45.91  Aligned_cols=32  Identities=13%  Similarity=0.289  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +++|||+|.+|.=+|..|++.. .+|.|+++++
T Consensus        26 D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            4799999999999999999977 4899999875

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.25  E-value=0.016  Score=38.55  Aligned_cols=32  Identities=16%  Similarity=0.322  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|..|..+|..|.+...+|.++.+.+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            58999999999999999999999999998754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.21  E-value=0.0023  Score=46.36  Aligned_cols=31  Identities=6%  Similarity=0.200  Sum_probs=25.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCC------eEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAK------EVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~------~V~l~~r~   31 (182)
                      ||+|||+|..|+-.|..|++...      +++++.+.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence            69999999999999999998653      56666554

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.014  Score=41.64  Aligned_cols=32  Identities=19%  Similarity=0.284  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.-|..+|..++..+.+|+++.+.+
T Consensus         6 kvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            58999999999999999999999999998865

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.94  E-value=0.014  Score=41.39  Aligned_cols=32  Identities=9%  Similarity=0.063  Sum_probs=29.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|.-|..+|..++..+.+|++..+.+
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            69999999999999999999999999998864

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=93.26  E-value=0.03  Score=43.78  Aligned_cols=32  Identities=13%  Similarity=0.190  Sum_probs=28.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +++|||+|.+|.=+|..|++.. .+|.++++++
T Consensus        19 D~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          19 DYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            4799999999999999999866 5899999875

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.01  E-value=0.035  Score=38.10  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=29.1

Q ss_pred             CEEEE-cCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILV-GSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VV-G~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      ||+|| |.|.-|.-+|..|++.+.+|.+..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999 569999999999999999999999864

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=92.74  E-value=0.031  Score=39.70  Aligned_cols=32  Identities=19%  Similarity=0.186  Sum_probs=29.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|||+|+=|.-+|..|++.+.+|++..|.+
T Consensus         9 KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            58999999999999999999988999998754

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=92.55  E-value=0.046  Score=41.44  Aligned_cols=32  Identities=16%  Similarity=0.283  Sum_probs=27.3

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~   32 (182)
                      +|+|||+|.+|+=.|.++++.  ..+|.++.+..
T Consensus         7 DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~   40 (311)
T d1kf6a2           7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (311)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             CEEEECccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            599999999999999999985  44799998653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.53  E-value=0.039  Score=36.36  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=29.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +++|+|.|..|..+|..|.+...+|+++...+
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            58999999999999999999999999988754

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.33  E-value=0.045  Score=38.29  Aligned_cols=31  Identities=16%  Similarity=0.313  Sum_probs=28.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|||+|+-|.-+|..|++...+|++..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            5899999999999999999999999998874

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=90.86  E-value=0.1  Score=36.33  Aligned_cols=32  Identities=13%  Similarity=0.389  Sum_probs=29.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+|..|...+....+.+.+|+++..+.
T Consensus        34 ~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          34 KVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            58999999999999999999999999998753

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=90.83  E-value=0.092  Score=35.75  Aligned_cols=32  Identities=25%  Similarity=0.169  Sum_probs=28.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      ||.|||.|+-|.-+|..|.+.+.+|+...|++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            58999999999999999999999999887753

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.07  E-value=0.16  Score=37.28  Aligned_cols=33  Identities=12%  Similarity=0.182  Sum_probs=29.7

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      ||+|.|| |..|..++..|.+.+.+|+.+.|...
T Consensus         5 KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           5 RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            6999997 99999999999998889999998653

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=90.03  E-value=0.13  Score=36.21  Aligned_cols=33  Identities=9%  Similarity=0.131  Sum_probs=29.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      +|+|+|+|..|...+.-..+.+.+|+++..+..
T Consensus        31 ~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          31 RVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             EEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            589999999999999999999999999987653

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=89.59  E-value=0.18  Score=34.59  Aligned_cols=32  Identities=19%  Similarity=0.358  Sum_probs=27.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|+|+|+|-+|.-++..|.+.. ++|+++.|..
T Consensus        19 ~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          19 KVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             CEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            5999999999999999999865 6899888753

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=89.52  E-value=0.076  Score=38.29  Aligned_cols=96  Identities=11%  Similarity=0.174  Sum_probs=51.1

Q ss_pred             CeEEcceeEEeeCC-C--eEEEc-CCc--EEecCEEEEecccccCCCCCCCCCc-e-e-cCC----Cccc--cccccccC
Q 037525           45 NMWLHSMIESAHDN-G--AVVFR-NGH--TVHADVILHCTGYKYHFPFLETNGI-V-T-MDD----NRVG--PLYKHVFP  109 (182)
Q Consensus        45 ~i~~~~~v~~~~~~-~--~v~~~-dg~--~~~~D~vi~atG~~~~~~~l~~~~~-~-~-~~~----~~~~--~ly~~~~~  109 (182)
                      +|..+..|++|..+ +  .+++. +|+  ++++|.||+|+|......+|.+... + . +..    ....  ..+.. ..
T Consensus       235 ~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  313 (347)
T d2ivda1         235 AAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGHLERVAAIDA-AL  313 (347)
T ss_dssp             GEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBTTHHHHHHHHHH-HH
T ss_pred             ccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceecCcccceecccc-cc
Confidence            45667788888642 1  35554 343  4689999999986433222322110 0 0 000    0000  00111 12


Q ss_pred             CCCCCCEEEEeccCCcccccHHHHHHHHHHHHH
Q 037525          110 PVLAPWLSFVGLPWKVIPFPLCEYQSKWIAGVL  142 (182)
Q Consensus       110 ~~~~p~l~~iG~~~~~~~~~~~e~qa~~ia~~l  142 (182)
                      +. .|++|.+|....+..++.+-.+++.+|+-+
T Consensus       314 ~~-~p~~~~~G~~~~g~~~~~~~~~g~~~a~~~  345 (347)
T d2ivda1         314 QR-LPGLHLIGNAYKGVGLNDCIRNAAQLADAL  345 (347)
T ss_dssp             HT-STTEEECSTTTSCCSHHHHHHHHHHHHHHH
T ss_pred             cC-CCCEEEecccccCCCHHHHHHHHHHHHHHh
Confidence            24 599999998765555565566777776654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=89.15  E-value=0.16  Score=34.82  Aligned_cols=31  Identities=16%  Similarity=0.424  Sum_probs=26.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~   31 (182)
                      +|+|||+|..|..++..|.... ++++++-|.
T Consensus        26 ~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          26 TVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            5899999999999999999865 578888775

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=89.14  E-value=0.16  Score=34.37  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=27.6

Q ss_pred             CEEEEcCCccHHHHHHHHhc--cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG--VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~--~a~~V~l~~r~~   32 (182)
                      +|.|||+|..|.-+|..|+.  .+.++.|+.+.+
T Consensus         7 KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           7 KVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            58999999999999999987  567899998654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=88.81  E-value=0.17  Score=34.82  Aligned_cols=140  Identities=14%  Similarity=0.166  Sum_probs=75.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCC--CCCCCCCCCCeEEcceeEEeeCCCeEEEcCCcEEecCEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADG--TYEKQPGFDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCT   78 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~--~~~~~~~~~~i~~~~~v~~~~~~~~v~~~dg~~~~~D~vi~at   78 (182)
                      +|+|+|+|-+|.-++..|.+...+|+++.|...-.  ..+.+..      ...++.+.-      .+-...++|.||=||
T Consensus        20 ~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~------~~~~~~~~~------~~~~~~~~dliIN~T   87 (170)
T d1nyta1          20 RILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAH------TGSIQALSM------DELEGHEFDLIINAT   87 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGG------GSSEEECCS------GGGTTCCCSEEEECC
T ss_pred             EEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhh------ccccccccc------ccccccccceeeccc
Confidence            58999999999999999999877899888853210  0000100      011111111      111123589999998


Q ss_pred             --ccccCCCCCCCCCceecCCCccccccccccCCCCCCCEEEE-----eccCCcccccHHHHHHHHHHHHHcCCCCCCCH
Q 037525           79 --GYKYHFPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFV-----GLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQ  151 (182)
Q Consensus        79 --G~~~~~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~i-----G~~~~~~~~~~~e~qa~~ia~~l~g~~~lP~~  151 (182)
                        |..++.+.++.. .  +....+  .|.-++.|.  ++-+.-     |......-..+.-.||...-+.|.|.  -|+.
T Consensus        88 p~G~~~~~~~~~~~-~--~~~~~~--v~D~vY~P~--~T~ll~~A~~~G~~~~i~Gl~MLi~Qa~~~f~lwtG~--~~~~  158 (170)
T d1nyta1          88 SSGISGDIPAIPSS-L--IHPGIY--CYDMFYQKG--KTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGV--LPDV  158 (170)
T ss_dssp             SCGGGTCCCCCCGG-G--CCTTCE--EEESCCCSS--CCHHHHHHHHTTCCEEECTHHHHHHHHHHHHHHHHSS--CCCH
T ss_pred             ccCcccCCCCCcHH-H--hccCcE--EEEeecCCC--CCHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHhCC--CCCH
Confidence              655443332211 1  111111  222222221  111110     11101123567889999999999994  4788


Q ss_pred             HHHHHHHHHH
Q 037525          152 EEMMEDTKAF  161 (182)
Q Consensus       152 ~~m~~~~~~~  161 (182)
                      ++|.+.+.+.
T Consensus       159 ~~~~~~l~~~  168 (170)
T d1nyta1         159 EPVIKQLQEE  168 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888877653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=88.63  E-value=0.23  Score=33.21  Aligned_cols=31  Identities=23%  Similarity=0.294  Sum_probs=27.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|+|+|..|..++..|.+...+|.++...
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d   35 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEecc
Confidence            4899999999999999999988889888764

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=88.43  E-value=0.24  Score=33.22  Aligned_cols=33  Identities=15%  Similarity=0.178  Sum_probs=27.0

Q ss_pred             CEEEEcCCccHHHHHHHHhc--cCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAG--VAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~--~a~~V~l~~r~~~   33 (182)
                      +|.|||+|..|..+|..|..  .+.++.|+.+.+.
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            68999999999999988886  4678999886553

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=88.18  E-value=0.26  Score=35.65  Aligned_cols=33  Identities=15%  Similarity=0.298  Sum_probs=29.8

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      ||+|.|+ |..|.-++..|.+.+.+|+.+.|...
T Consensus         5 KILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           5 RILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            7999997 99999999999998889999998653

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=87.51  E-value=0.16  Score=35.12  Aligned_cols=142  Identities=12%  Similarity=0.157  Sum_probs=71.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCCCCCCCCCCCCCCeEEcceeEEeeCCCeEEEcCCcEEecCEEEEeccc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVADGTYEKQPGFDNMWLHSMIESAHDNGAVVFRNGHTVHADVILHCTGY   80 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~~~~~~~~~~~~~i~~~~~v~~~~~~~~v~~~dg~~~~~D~vi~atG~   80 (182)
                      +|+|+|+|-+|.-++..|.+.+++|+++.|...-.  +.+.  ..+.....+....      +.+....++|.||-||..
T Consensus        20 ~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a--~~l~--~~~~~~~~~~~~~------~~~~~~~~~diiIN~tp~   89 (171)
T d1p77a1          20 HVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKT--KELA--ERFQPYGNIQAVS------MDSIPLQTYDLVINATSA   89 (171)
T ss_dssp             EEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHH--HHHH--HHHGGGSCEEEEE------GGGCCCSCCSEEEECCCC
T ss_pred             EEEEECCcHHHHHHHHHHcccCceeeeccchHHHH--HHHH--HHHhhccccchhh------hccccccccceeeecccc
Confidence            48999999999999999999888999998863210  0000  0000001111111      111122368999999854


Q ss_pred             ccC--CCCCCCCCceecCCCccccccccccCCCCCCCEEEE-----eccCCcccccHHHHHHHHHHHHHcCCCCCCCHHH
Q 037525           81 KYH--FPFLETNGIVTMDDNRVGPLYKHVFPPVLAPWLSFV-----GLPWKVIPFPLCEYQSKWIAGVLSGQIVLPSQEE  153 (182)
Q Consensus        81 ~~~--~~~l~~~~~~~~~~~~~~~ly~~~~~~~~~p~l~~i-----G~~~~~~~~~~~e~qa~~ia~~l~g~~~lP~~~~  153 (182)
                      ...  .+..... .  ......  .+.-+..+. .++.|.-     |...-.....+.-.||...-..|.|.  .|+.+.
T Consensus        90 g~~~~~~~~~~~-~--~~~~~~--~~D~vy~~p-~~T~~l~~A~~~g~~~v~~Gl~Ml~~Qa~~~f~iwtg~--~~~~~~  161 (171)
T d1p77a1          90 GLSGGTASVDAE-I--LKLGSA--FYDMQYAKG-TDTPFIALCKSLGLTNVSDGFGMLVAQAAHSFHLWRGV--MPDFVS  161 (171)
T ss_dssp             -------CCCHH-H--HHHCSC--EEESCCCTT-SCCHHHHHHHHTTCCCEECSHHHHHHHHHHHHHHHHSC--CCCHHH
T ss_pred             cccccccchhhh-h--hcccce--eeeeeccCc-ccHHHHHHHHHcCCCcccCcHHHHHHHHHHHHHHHHCC--CCChHH
Confidence            332  1111100 0  000110  111111110 1121110     11110123668889999999999995  367888


Q ss_pred             HHHHHHH
Q 037525          154 MMEDTKA  160 (182)
Q Consensus       154 m~~~~~~  160 (182)
                      |.+.+++
T Consensus       162 ~~~~l~~  168 (171)
T d1p77a1         162 VYEQLKK  168 (171)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.13  E-value=0.25  Score=34.60  Aligned_cols=33  Identities=15%  Similarity=0.257  Sum_probs=29.5

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      ||+|.|+ |..|..++.+|.+.+.+|+.+.|++.
T Consensus         5 kIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            5899995 99999999999999999999998653

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.08  E-value=0.2  Score=33.76  Aligned_cols=32  Identities=16%  Similarity=0.326  Sum_probs=27.1

Q ss_pred             CEEEEcCCccHHHHHHHHhc--cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG--VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~--~a~~V~l~~r~~   32 (182)
                      +|.|||+|..|.-+|..|+.  .+.++.|+.+.+
T Consensus         8 KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           8 RVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            58999999999999999887  567898887643

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=87.03  E-value=0.29  Score=32.62  Aligned_cols=32  Identities=22%  Similarity=0.254  Sum_probs=26.8

Q ss_pred             CEEEEcCCccHHHHHHHHhcc--CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV--AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~--a~~V~l~~r~~   32 (182)
                      +|+|||+|..|.-+|..|+..  +.++.|+...+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            589999999999999888874  57888887654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=86.90  E-value=0.33  Score=32.30  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=29.0

Q ss_pred             CEEEEc-CCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVG-SSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG-~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+||| .|+-|.-+|..|.+.+-+|++..|..
T Consensus        11 kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          11 KIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             eEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            689999 69999999999999999999988754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.33  E-value=0.31  Score=34.28  Aligned_cols=31  Identities=23%  Similarity=0.077  Sum_probs=28.0

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|.|||.|..|.=+|..|++.+.+|+.+...
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n   32 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence            5899999999999999999999999887753

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.21  E-value=0.29  Score=33.70  Aligned_cols=30  Identities=20%  Similarity=0.372  Sum_probs=26.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|+|+|+|-+|.-++..|.+.+ +|++..|.
T Consensus        20 ~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          20 NIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             EEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             EEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            5899999999999999998765 89988885

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=86.09  E-value=0.35  Score=33.44  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=27.5

Q ss_pred             CEEEEcCCccHHHHHHHHhcc-CCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGV-AKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~-a~~V~l~~r~~   32 (182)
                      +|+|+|+|-+|.-++..|... +++++++.|..
T Consensus        20 ~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          20 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             EEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            589999999999999999985 56799988864

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.00  E-value=0.33  Score=32.59  Aligned_cols=31  Identities=23%  Similarity=0.277  Sum_probs=27.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      ||.+||.|+-|.-++.-|.+...++++..|.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~   32 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSS   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcCh
Confidence            5899999999999999999888889888775

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.34  E-value=0.51  Score=30.14  Aligned_cols=33  Identities=21%  Similarity=0.304  Sum_probs=29.1

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccCC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSVA   33 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~~   33 (182)
                      ||.|+|||--|.-+|....+.+-+|.+..+.+.
T Consensus        13 kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          13 RVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             EEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             EEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            589999999999999999999999988877543

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=85.20  E-value=0.29  Score=32.83  Aligned_cols=32  Identities=19%  Similarity=0.280  Sum_probs=26.6

Q ss_pred             CEEEEcCCccHHHHHHHHhc--cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG--VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~--~a~~V~l~~r~~   32 (182)
                      +|+|||+|+.|.-+|..|+.  .+.++.|+...+
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            58999999999999988875  677888887643

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.19  E-value=0.41  Score=32.13  Aligned_cols=32  Identities=19%  Similarity=0.282  Sum_probs=27.0

Q ss_pred             CEEEEcC-CccHHHHHHHHhc--cCCeEEEEeccC
Q 037525            1 VIILVGS-SASAVDICRDLAG--VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~--~a~~V~l~~r~~   32 (182)
                      +|.|||+ |+.|.-+|..|+.  .+.++.|+.+.+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            5899995 9999999999986  467899988754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.07  E-value=0.39  Score=32.83  Aligned_cols=32  Identities=22%  Similarity=0.264  Sum_probs=27.1

Q ss_pred             CEEEEcCCccHHHHHHHHhc--cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG--VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~--~a~~V~l~~r~~   32 (182)
                      +|.|||+|+.|.-+|..|..  .+.++.|+.+.+
T Consensus        21 KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          21 KITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            48999999999999999987  477898887643

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=84.83  E-value=0.32  Score=35.23  Aligned_cols=31  Identities=16%  Similarity=0.259  Sum_probs=26.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~   31 (182)
                      +|+|||.|-.|..+|..|++.+ ++++++...
T Consensus        32 ~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          32 RVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            5999999999999999999954 578888653

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.77  E-value=0.31  Score=32.58  Aligned_cols=32  Identities=16%  Similarity=0.051  Sum_probs=26.7

Q ss_pred             CEEEEcCCccHHHHHHHHhc--cCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAG--VAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~--~a~~V~l~~r~~   32 (182)
                      +|.|||+|..|..+|..|+.  .+.++.|+...+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            58999999999999998884  677888887543

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=84.62  E-value=0.39  Score=32.25  Aligned_cols=31  Identities=16%  Similarity=0.296  Sum_probs=25.9

Q ss_pred             CEEEEcCCccHHHHHHHHhc--cCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAG--VAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~--~a~~V~l~~r~   31 (182)
                      +|.|||+|+.|..+|..|+.  .+.++.|+...
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            58999999999999998886  46688887754

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.32  E-value=0.49  Score=31.86  Aligned_cols=32  Identities=9%  Similarity=0.165  Sum_probs=28.4

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||-|+-|.-+|..|++.+.+|++..|.+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            58899999999999999999988998877643

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=84.15  E-value=0.42  Score=32.72  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=26.8

Q ss_pred             CEEEEcCCccHHHHHHHHhc--cCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAG--VAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~--~a~~V~l~~r~   31 (182)
                      +|.|||+|+.|.-+|..|..  .+.++.|+.+.
T Consensus        22 KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          22 KITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            58999999999999999987  57788888764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.77  E-value=0.45  Score=31.59  Aligned_cols=31  Identities=23%  Similarity=0.190  Sum_probs=25.7

Q ss_pred             CEEEEcCCccHHHHHHHHhc--cCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAG--VAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~--~a~~V~l~~r~   31 (182)
                      +|.|||+|..|.-+|..|+.  .+.++.|+...
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            58999999999999988776  56788888754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.35  E-value=0.72  Score=30.76  Aligned_cols=31  Identities=10%  Similarity=0.174  Sum_probs=26.2

Q ss_pred             CEEEEcC-CccHHHHHHHHhc--cCCeEEEEecc
Q 037525            1 VIILVGS-SASAVDICRDLAG--VAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~--~a~~V~l~~r~   31 (182)
                      +|+|||+ |..|.-+|..|+.  .+.++.|+...
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            5899995 9999999999996  57788888753

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.94  E-value=0.6  Score=36.98  Aligned_cols=31  Identities=13%  Similarity=0.476  Sum_probs=26.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~   31 (182)
                      ||+|||+|-.|.|+|..|+..+ .+++++...
T Consensus        39 kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          39 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             CEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            6999999999999999999854 478888764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.93  E-value=0.61  Score=31.43  Aligned_cols=32  Identities=9%  Similarity=0.132  Sum_probs=28.5

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.+||-|+-|.-+|..|.+.+.+|++..|..
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            58999999999999999999988998887653

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.83  E-value=0.45  Score=31.73  Aligned_cols=31  Identities=16%  Similarity=0.116  Sum_probs=27.2

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      ||.|||.|+-|.-+|..|++.+.+|++..++
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~   32 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEG   32 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTT
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCc
Confidence            5899999999999999999988888776654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=82.49  E-value=0.48  Score=31.58  Aligned_cols=32  Identities=13%  Similarity=0.260  Sum_probs=26.9

Q ss_pred             CEEEEcCCccHHHHHHHHhccC-CeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVA-KEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a-~~V~l~~r~~   32 (182)
                      +|.+||+|+-|.-+|.-|.+.. .+|+++.|++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            5899999999999999888765 6888887754

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=82.47  E-value=0.64  Score=32.26  Aligned_cols=32  Identities=19%  Similarity=0.255  Sum_probs=28.3

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|.|||.|..|..+|..+...+.+|+...|..
T Consensus        44 ~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          44 KVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             EEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEeccccccccceeeeeccccccccccccc
Confidence            48999999999999999999998999887643

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.08  E-value=2.3  Score=29.35  Aligned_cols=71  Identities=13%  Similarity=-0.024  Sum_probs=43.8

Q ss_pred             CEEEEecccccCCCCCCC-CCceecCCC-ccccccccccCCCCCCCEEEEeccCCcc-cccHHHHHHHHHHHHHcCC
Q 037525           72 DVILHCTGYKYHFPFLET-NGIVTMDDN-RVGPLYKHVFPPVLAPWLSFVGLPWKVI-PFPLCEYQSKWIAGVLSGQ  145 (182)
Q Consensus        72 D~vi~atG~~~~~~~l~~-~~~~~~~~~-~~~~ly~~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~ia~~l~g~  145 (182)
                      +..+.++|.+|+++.|.. ..++++++. .+ .....+. .+ .|++|.+|+...++ ..+.+..+++.+|..+.+.
T Consensus       155 ~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i-~vd~~~~-T~-~~~v~A~GD~~~g~~l~~~a~~~G~~aa~~i~~~  228 (233)
T d1v59a1         155 SEVTPFVGRRPYIAGLGAEKIGLEVDKRGRL-VIDDQFN-SK-FPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTG  228 (233)
T ss_dssp             EEECCCSCEEECCTTSCTTTTTCCBCTTSCB-CCCTTSB-CS-STTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred             cccceecccccCCCCcCchhcCeEEcCCCcE-EECCeEe-cC-CCCEEEEcCCcccHHHHHHHHHHHHHHHHHHccC
Confidence            444458888888775532 223444332 22 2222222 34 69999999986443 3457889999999888654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=81.92  E-value=0.32  Score=34.69  Aligned_cols=32  Identities=13%  Similarity=0.059  Sum_probs=19.6

Q ss_pred             CCCEEEEeccCCccccc----HHHHHHHHHHHHHcC
Q 037525          113 APWLSFVGLPWKVIPFP----LCEYQSKWIAGVLSG  144 (182)
Q Consensus       113 ~p~l~~iG~~~~~~~~~----~~e~qa~~ia~~l~g  144 (182)
                      .|+||+.|....+....    .....|..|.++|..
T Consensus       336 ~pglf~aGd~~~g~~~~~A~~~G~~aA~~i~~~L~~  371 (373)
T d1seza1         336 LPGLFYAGNHRGGLSVGKALSSGCNAADLVISYLES  371 (373)
T ss_dssp             STTEEECCSSSSCSSHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEecCCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence            59999999876443333    334555555555543

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=81.77  E-value=0.69  Score=34.73  Aligned_cols=32  Identities=25%  Similarity=0.337  Sum_probs=29.1

Q ss_pred             CEEEEcC-CccHHHHHHHHhccCCeEEEEeccC
Q 037525            1 VIILVGS-SASAVDICRDLAGVAKEVHLVSRSV   32 (182)
Q Consensus         1 ~V~VVG~-G~sg~d~A~~l~~~a~~V~l~~r~~   32 (182)
                      +|+|+|+ |..|..++..|.+.+.+|+.+.|..
T Consensus         5 tIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           5 TIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             EEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            5899996 9999999999999988999999864

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=81.57  E-value=0.64  Score=32.73  Aligned_cols=31  Identities=10%  Similarity=0.078  Sum_probs=27.6

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|.|||.|..|..+|..+...+.+|+...+.
T Consensus        47 tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~   77 (199)
T d1dxya1          47 TVGVMGTGHIGQVAIKLFKGFGAKVIAYDPY   77 (199)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             eeeeeecccccccccccccccceeeeccCCc
Confidence            4899999999999999999999999887664

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=81.50  E-value=0.74  Score=31.99  Aligned_cols=31  Identities=19%  Similarity=0.243  Sum_probs=27.8

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEecc
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSRS   31 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r~   31 (182)
                      +|.|||.|..|.++|..+.....+|....|.
T Consensus        46 ~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~   76 (188)
T d2naca1          46 HVGTVAAGRIGLAVLRRLAPFDVHLHYTDRH   76 (188)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCEEEEECSS
T ss_pred             ceeeccccccchhhhhhhhccCceEEEEeec
Confidence            4789999999999999999999899888764

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=80.56  E-value=0.73  Score=32.44  Aligned_cols=30  Identities=17%  Similarity=0.165  Sum_probs=26.7

Q ss_pred             CEEEEcCCccHHHHHHHHhccCCeEEEEec
Q 037525            1 VIILVGSSASAVDICRDLAGVAKEVHLVSR   30 (182)
Q Consensus         1 ~V~VVG~G~sg~d~A~~l~~~a~~V~l~~r   30 (182)
                      +|.|||.|+.|.++|..+...+.+|+...+
T Consensus        45 ~vgIiG~G~IG~~va~~l~~fg~~V~~~d~   74 (197)
T d1j4aa1          45 VVGVVGTGHIGQVFMQIMEGFGAKVITYDI   74 (197)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             eEEEecccccchhHHHhHhhhcccccccCc
Confidence            589999999999999999999989877654