Citrus Sinensis ID: 037526

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
EGGKDHASGQKKSIVIGPWGGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPTLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQSSKLLQRVQKGLQRLASTTAKSSATKDGGKAH
cccccccccccccEEEcEEEccccccccccccccEEEEEEEEcccEEEEEEEEEccccEEEEccccccccccccEEEcccccccccEEEccccccEEEEEEEEccEEEccccEEEEEEEEEccccccccccccccEEEEEccccEEEEEEEEccccccEEEEEEEcccccHHHHHHHHccEEcccccccccccccccccc
cccccccccccccEEEEEEEccccEEEEcccccEEEEEEEEEcccEEEEEEEEEEccEEEEcccEccccccccEEEcccccccEEEEEcccccccEEEEEEEEEEcccccEEEEEEEEEEEcccEEEEEEccccEEEEEEccccEEEEEEEEEcccEEEEEEEEEcccccccccccccccHHcccccccccccccccccc
eggkdhasgqkksivigpwggnggtswddgiYHGVREITLAYDRCIDSIRVVydkkgnpvtaekhggvggnrtaeicsiptllsfpiklrfpeeFLISVSghycpvvyggspvirsltfksnkrtfgpfgveegtpftfsmdgglvvgfkgrsgwyVDAIGFYLSKKQSSKLLQRVQKGLQRLASttakssatkdggkah
eggkdhasgqkksivigpwggnggtSWDDGIYHGVREITLAYDRCIDSIRvvydkkgnpvtaekhggvggnrtAEICSIPTLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQSSKLLQRVQKGLqrlasttakssatkdggkah
EGGKDHASGQKKSIVIGPWGGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPTLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQSSKLLQRVQKGLQRLASTTAKSSATKDGGKAH
*************IVIGPWGGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPTLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLS***********************************
*******************GGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPTLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKK*********************************
**********KKSIVIGPWGGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPTLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQSSK*****************************
**********KKSIVIGPWGGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPTLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQS*******************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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EGGKDHASGQKKSIVIGPWGGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPTLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQSSKLLQRVQKGLQRLASTTAKSSATKDGGKAH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query200 2.2.26 [Sep-21-2011]
P18674133 Agglutinin alpha chain OS N/A no 0.65 0.977 0.430 3e-24
P18670133 Agglutinin alpha chain OS N/A no 0.65 0.977 0.409 2e-23
P82859309 Agglutinin OS=Castanea cr N/A no 0.645 0.417 0.447 3e-22
Q9SAV1642 Myrosinase-binding protei no no 0.66 0.205 0.363 2e-17
O80998449 Myrosinase-binding protei no no 0.65 0.289 0.381 3e-17
Q9SAV0462 Myrosinase-binding protei no no 0.665 0.287 0.360 7e-17
O04309451 Myrosinase-binding protei no no 0.685 0.303 0.346 9e-17
O04312300 Myrosinase-binding protei no no 0.665 0.443 0.326 4e-16
P83304 447 Mannose/glucose-specific N/A no 0.715 0.319 0.361 4e-15
O80950 458 Myrosinase-binding protei no no 0.665 0.290 0.335 5e-14
>sp|P18674|LECA_MACPO Agglutinin alpha chain OS=Maclura pomifera PE=1 SV=2 Back     alignment and function desciption
 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 82/144 (56%), Gaps = 14/144 (9%)

Query: 24  GTSWDDGIYHGVREITLAYDR--CIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPT 81
           G ++DDG Y G+REI   Y+    I  +RV YD  G P  AE H             I  
Sbjct: 1   GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSF----------ITG 50

Query: 82  LLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSM 141
                I L FP E+++ VSG+   V   G  VIRSLTFK+NK+T+GP+GV  GTPF+  +
Sbjct: 51  FKPVKISLEFPSEYIVEVSGYVGKV--EGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPI 108

Query: 142 DGGLVVGFKGRSGWYVDAIGFYLS 165
           + GL+VGFKG  G+++D    YLS
Sbjct: 109 ENGLIVGFKGSIGYWLDYFSIYLS 132
D-galactose-specific lectin, binds the T-antigen structure Gal-beta1,3-GalNAc.
Maclura pomifera (taxid: 3496)
>sp|P18670|LECA_ARTIN Agglutinin alpha chain OS=Artocarpus integer PE=1 SV=2 Back     alignment and function description
>sp|P82859|LECA_CASCR Agglutinin OS=Castanea crenata PE=1 SV=1 Back     alignment and function description
>sp|Q9SAV1|MB11_ARATH Myrosinase-binding protein-like At1g52030 OS=Arabidopsis thaliana GN=F-ATMBP PE=2 SV=1 Back     alignment and function description
>sp|O80998|MB21_ARATH Myrosinase-binding protein-like At2g25980 OS=Arabidopsis thaliana GN=At2g25980 PE=2 SV=1 Back     alignment and function description
>sp|Q9SAV0|MB12_ARATH Myrosinase-binding protein-like At1g52040 OS=Arabidopsis thaliana GN=At1g52040 PE=2 SV=1 Back     alignment and function description
>sp|O04309|MB31_ARATH Myrosinase-binding protein-like At3g16470 OS=Arabidopsis thaliana GN=At3g16470 PE=1 SV=1 Back     alignment and function description
>sp|O04312|MB32_ARATH Myrosinase-binding protein-like At3g16440 OS=Arabidopsis thaliana GN=At3g16440 PE=2 SV=1 Back     alignment and function description
>sp|P83304|LEC_PARPC Mannose/glucose-specific lectin (Fragment) OS=Parkia platycephala PE=1 SV=1 Back     alignment and function description
>sp|O80950|MB22_ARATH Myrosinase-binding protein-like At2g39310 OS=Arabidopsis thaliana GN=At2g39310 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query200
224120044191 predicted protein [Populus trichocarpa] 0.945 0.989 0.696 1e-76
255549680 514 hypothetical protein RCOM_1485780 [Ricin 0.915 0.356 0.670 8e-74
359482531271 PREDICTED: uncharacterized protein LOC10 0.91 0.671 0.687 2e-72
297743121210 unnamed protein product [Vitis vinifera] 0.91 0.866 0.687 4e-72
357454743 761 Agglutinin alpha chain [Medicago truncat 0.87 0.228 0.691 4e-70
356557323 833 PREDICTED: uncharacterized protein LOC10 0.905 0.217 0.661 2e-69
356547357 335 PREDICTED: uncharacterized protein LOC10 0.88 0.525 0.663 4e-67
388492280182 unknown [Lotus japonicus] 0.885 0.972 0.656 2e-65
106879607197 jacalin-domain protein [Plantago major] 0.845 0.857 0.653 3e-62
15219349176 jacalin-like lectin domain-containing pr 0.825 0.937 0.590 1e-58
>gi|224120044|ref|XP_002318228.1| predicted protein [Populus trichocarpa] gi|222858901|gb|EEE96448.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 140/201 (69%), Positives = 165/201 (82%), Gaps = 12/201 (5%)

Query: 1   EGGKDHASGQKKS-IVIGPWGGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNP 59
           E GK+ ++ +KKS I++GPWGGNGG SWDDGIYHGVREIT+ YD+CIDSI+VVYDK G P
Sbjct: 2   ENGKEQSAARKKSTILVGPWGGNGGDSWDDGIYHGVREITIVYDQCIDSIQVVYDKNGKP 61

Query: 60  VTAEKHGGVGGNRTAEICSIPTLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTF 119
           +TAE HGGVGG+RTAEI           KL++PEE+L SVSGHYCPVVYGGSPVIRSL F
Sbjct: 62  ITAENHGGVGGSRTAEI-----------KLQYPEEYLTSVSGHYCPVVYGGSPVIRSLAF 110

Query: 120 KSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQSSKLLQRVQKG 179
            SNKRTFGPFGVEEGTPFT SMDG  +VGFKGR GWY+DAIGF LS+ QS+K+L++ Q+ 
Sbjct: 111 SSNKRTFGPFGVEEGTPFTLSMDGASIVGFKGRGGWYLDAIGFRLSRIQSTKVLKKFQQK 170

Query: 180 LQRLASTTAKSSATKDGGKAH 200
           LQRL ST +KSSA+KD  K +
Sbjct: 171 LQRLTSTVSKSSASKDAEKTY 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255549680|ref|XP_002515891.1| hypothetical protein RCOM_1485780 [Ricinus communis] gi|223544796|gb|EEF46311.1| hypothetical protein RCOM_1485780 [Ricinus communis] Back     alignment and taxonomy information
>gi|359482531|ref|XP_002276378.2| PREDICTED: uncharacterized protein LOC100265130 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297743121|emb|CBI35988.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357454743|ref|XP_003597652.1| Agglutinin alpha chain [Medicago truncatula] gi|355486700|gb|AES67903.1| Agglutinin alpha chain [Medicago truncatula] Back     alignment and taxonomy information
>gi|356557323|ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max] Back     alignment and taxonomy information
>gi|356547357|ref|XP_003542080.1| PREDICTED: uncharacterized protein LOC100306436 [Glycine max] Back     alignment and taxonomy information
>gi|388492280|gb|AFK34206.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|106879607|emb|CAJ38387.1| jacalin-domain protein [Plantago major] Back     alignment and taxonomy information
>gi|15219349|ref|NP_177447.1| jacalin-like lectin domain-containing protein [Arabidopsis thaliana] gi|5903093|gb|AAD55651.1|AC008017_24 Similar to jacalin [Arabidopsis thaliana] gi|61656125|gb|AAX49365.1| At1g73040 [Arabidopsis thaliana] gi|149944307|gb|ABR46196.1| At1g73040 [Arabidopsis thaliana] gi|332197286|gb|AEE35407.1| jacalin-like lectin domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query200
TAIR|locus:2032622176 AT1G73040 "AT1G73040" [Arabido 0.845 0.960 0.585 6.6e-58
UNIPROTKB|P18670133 P18670 "Agglutinin alpha chain 0.65 0.977 0.423 4.2e-24
TAIR|locus:2034061314 AT1G52060 "AT1G52060" [Arabido 0.69 0.439 0.415 2.7e-20
TAIR|locus:2088374705 JAL34 "jacalin-related lectin 0.66 0.187 0.369 1.9e-19
TAIR|locus:2088354296 JAL31 "jacalin-related lectin 0.66 0.445 0.378 5.1e-19
TAIR|locus:2088344298 PBP1 "PYK10-binding protein 1" 0.665 0.446 0.369 3.6e-18
TAIR|locus:2057391449 AT2G25980 "AT2G25980" [Arabido 0.65 0.289 0.381 5.9e-18
TAIR|locus:2034081642 MBP2 "myrosinase-binding prote 0.65 0.202 0.371 8.3e-18
TAIR|locus:2034076315 AT1G52070 "AT1G52070" [Arabido 0.695 0.441 0.414 9.5e-18
TAIR|locus:2088364300 MLP-300B "AT3G16440" [Arabidop 0.66 0.44 0.337 1.2e-17
TAIR|locus:2032622 AT1G73040 "AT1G73040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 106/181 (58%), Positives = 140/181 (77%)

Query:     9 GQKK-SIVIGPWGGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGG 67
             G K  ++ +GPWGGNGGT+WDDGIY GVREI L YD CIDSI V+YDK G P  +EKHGG
Sbjct:     7 GDKNLTVFVGPWGGNGGTTWDDGIYDGVREIRLVYDHCIDSISVIYDKNGKPAKSEKHGG 66

Query:    68 VGGNRTAEICSIPTLLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFG 127
             VGGN+T+EI           KL++PEE+L  VSG+YCP+V  G+PVIRS+TFKSNK+ +G
Sbjct:    67 VGGNKTSEI-----------KLQYPEEYLTGVSGYYCPMVNSGTPVIRSMTFKSNKQVYG 115

Query:   128 PFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQSSKLLQRVQKGLQRLASTT 187
             P+GVE+GTPFTFS++GG +VG  GRSGWY+D+IGF+LS+ +S+K++ +++K +  L    
Sbjct:   116 PYGVEQGTPFTFSVNGGRIVGMNGRSGWYLDSIGFHLSRPKSTKMINKLRKKIHWLTRIV 175

Query:   188 A 188
             A
Sbjct:   176 A 176
GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0015996 "chlorophyll catabolic process" evidence=RCA
UNIPROTKB|P18670 P18670 "Agglutinin alpha chain" [Artocarpus integer (taxid:3490)] Back     alignment and assigned GO terms
TAIR|locus:2034061 AT1G52060 "AT1G52060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088374 JAL34 "jacalin-related lectin 34" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088354 JAL31 "jacalin-related lectin 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088344 PBP1 "PYK10-binding protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057391 AT2G25980 "AT2G25980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034081 MBP2 "myrosinase-binding protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034076 AT1G52070 "AT1G52070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088364 MLP-300B "AT3G16440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
cd09612130 cd09612, Jacalin, Jacalin-like plant lectin domain 1e-47
pfam01419132 pfam01419, Jacalin, Jacalin-like lectin domain 1e-33
smart00915128 smart00915, Jacalin, Jacalin-like lectin domain 6e-29
cd09302128 cd09302, Jacalin_like, Jacalin-like lectin domain 9e-14
PLN02193 470 PLN02193, PLN02193, nitrile-specifier protein 6e-09
cd09614128 cd09614, griffithsin_like, Jacalin-like lectin dom 4e-07
>gnl|CDD|187708 cd09612, Jacalin, Jacalin-like plant lectin domain Back     alignment and domain information 
 Score =  151 bits (385), Expect = 1e-47
 Identities = 72/144 (50%), Positives = 92/144 (63%), Gaps = 16/144 (11%)

Query: 24  GTSWDDGIYH-GVREITLAYD-RCIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPT 81
           G++WDDG++  G+R+IT+      IDSI+  YDK G  V    HGG GG           
Sbjct: 1   GSAWDDGVFPDGLRKITVRSGENGIDSIKFEYDKDGQHVVGPWHGGGGGTPE-------- 52

Query: 82  LLSFPIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSM 141
                I L +P+E++ SVSG Y P    GS VI SLTFK+NKRT+GPFGVE GTPF+  +
Sbjct: 53  ----EIVLDYPDEYITSVSGTYGP--VSGSNVITSLTFKTNKRTYGPFGVESGTPFSLPV 106

Query: 142 DGGLVVGFKGRSGWYVDAIGFYLS 165
           +GG +VGF GRSG Y+DAIG Y+S
Sbjct: 107 EGGKIVGFHGRSGDYLDAIGVYVS 130

Jacalin-like lectins are sugar-binding protein domains mostly found in plants. They adopt a beta-prism topology consistent with a circularly permuted three-fold repeat of a structural motif. Proteins containing this domain may bind mono- or oligosaccharides with high specificity. The domain can occur in tandem-repeat arrangements with up to six copies, and in architectures combined with a variety of other functional domains. The family was initially named after an abundant protein found in the jackfruit seed. Jacalin specifically binds to the alpha-O-glycoside of the disaccharide Gal-beta1-3-GalNAc, and has proven useful in the study of O-linked glycoproteins. Jacalin-like lectins in this family may occur in various oligomerization states. Length = 130
>gnl|CDD|216489 pfam01419, Jacalin, Jacalin-like lectin domain Back     alignment and domain information
>gnl|CDD|214909 smart00915, Jacalin, Jacalin-like lectin domain Back     alignment and domain information
>gnl|CDD|187706 cd09302, Jacalin_like, Jacalin-like lectin domain Back     alignment and domain information
>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein Back     alignment and domain information
>gnl|CDD|187710 cd09614, griffithsin_like, Jacalin-like lectin domain of griffithsin and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 200
PF01419130 Jacalin: Jacalin-like lectin domain; InterPro: IPR 99.97
PLN02193 470 nitrile-specifier protein 99.97
KOG4525614 consensus Jacalin-like lectin domain-containing pr 99.12
PF01419130 Jacalin: Jacalin-like lectin domain; InterPro: IPR 94.18
KOG4525614 consensus Jacalin-like lectin domain-containing pr 84.94
>PF01419 Jacalin: Jacalin-like lectin domain; InterPro: IPR001229 This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry Back     alignment and domain information 
Probab=99.97  E-value=2.2e-31  Score=207.10  Aligned_cols=128  Identities=46%  Similarity=0.859  Sum_probs=113.1

Q ss_pred             CcccccCCCCceEEEEEEeC-CcEeEEEEEEecCCceEEecccCCCCCcccceeeccCCcceeceEecCCCceEEEEEEE
Q 037526           24 GTSWDDGIYHGVREITLAYD-RCIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPTLLSFPIKLRFPEEFLISVSGH  102 (200)
Q Consensus        24 G~~fdd~~~~~V~~I~V~~g-~~Id~Iqf~Y~~~G~~~~~~~hG~~gg~~~~e~~~~~~~~~~~~~L~~p~EyIt~IsG~  102 (200)
                      |..|||+.+..|++|.|+++ ..|++|||.|.+++..++...||..++....|           |.|++|+|||++|+|+
T Consensus         1 g~~~d~g~~~~v~~i~v~~~~~~I~~Iq~~Y~~~~g~~~~~~~G~~~g~~~~~-----------~~l~~~~E~It~isG~   69 (130)
T PF01419_consen    1 GDSWDDGGHDGVKKIVVIYGGDGIDGIQFTYDDGGGQVWGQQHGGNGGGSTKE-----------FELDDPDEYITSISGT   69 (130)
T ss_dssp             SEEEEEECSSEEEEEEEEEESSSEEEEEEEEEETTEEEEEEEEECSSSTEEEE-----------EEEETTTS-EEEEEEE
T ss_pred             CCcccCCCCCCCEEEEEEECCCEEEEEEEEEECCCceEEeeccCcccccCccc-----------eEECCCccEEEEEEEE
Confidence            67899999999999999987 79999999998765667889999988744556           8998679999999999


Q ss_pred             EeeeecCCCCeEEEEEEEeCCCceeecccCCCCeEEEec-CCCEEEEEEEecCCcccEEEEEEEe
Q 037526          103 YCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSM-DGGLVVGFKGRSGWYVDAIGFYLSK  166 (200)
Q Consensus       103 ~g~~~~~~~~~I~sL~F~TNk~t~gpfG~~~G~~F~~~~-~g~~IvGF~GrsG~~LdsIGvy~~p  166 (200)
                      ++.    ...+|++|+|+||++++.|+|...|++|++++ ++++|||||||++++||+|||||+|
T Consensus        70 ~~~----~~~~I~sL~F~Tnkg~~~~~gg~~g~~F~~~~~~~~~ivGF~G~~g~~ld~iG~y~~p  130 (130)
T PF01419_consen   70 YGK----GHDYITSLTFTTNKGRYSPFGGSGGTKFSLPVPEGGQIVGFFGRSGDYLDSIGVYFTP  130 (130)
T ss_dssp             EEE----TEEEEEEEEEEESSSEEEEEECSCSEEEEEEESESEEEEEEEEEESSSEEEEEEEEEE
T ss_pred             EEc----CccEEEEEEEEecCCcccCcccccCCEEEEeecCCCEEEEEEEEcCCeEEEEEEEEeC
Confidence            985    34689999999999988888888889999887 6889999999999999999999998

Some lectins in this group stimulate distinct T- and B- cell functions, such as Jacalin, which binds to the T-antigen and acts as an agglutinin. This domain is found in 1 to 6 copies in lectins. The domain is also found in the salt-stress induced protein from rice and an animal prostatic spermine-binding protein. Proteins containing this domain include: Jacalin, a tetrameric plant seed lectin and agglutinin from Artocarpus heterophyllus (jackfruit), which is specific for galactose []. Artocarpin, a tetrameric plant seed lectin from A. heterophyllus []. Lectin MPA, a tetrameric plant seed lectin and agglutinin from Maclura pomifera (Osage orange), []. Heltuba lectin, a plant seed lectin and agglutinin from Helianthus tuberosus (Jerusalem artichoke) []. Agglutinin from Calystegia sepium (Hedge bindweed) []. Griffithsin, an anti-viral lectin from red algae (Griffithsia species) []. ; PDB: 2GUE_B 2HYR_A 2GTY_B 2HYQ_B 3LKY_A 2GUC_B 2GUD_A 2NUO_B 2NU5_B 3LL2_A ....
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>KOG4525 consensus Jacalin-like lectin domain-containing protein [General function prediction only] Back     alignment and domain information
>PF01419 Jacalin: Jacalin-like lectin domain; InterPro: IPR001229 This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry Back     alignment and domain information
>KOG4525 consensus Jacalin-like lectin domain-containing protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
1xxq_A161 Structure Of A Mannose-Specific Jacalin-Related Lec 1e-35
3p8s_A157 Crystal Structure Of Single Chain Recombinant Jacal 1e-28
1j4s_A149 Structure Of Artocarpin: A Lectin With Mannose Spec 8e-28
1j4t_A149 Structure Of Artocarpin: A Lectin With Mannose Spec 9e-28
1vbp_A149 Crystal Structure Of Artocarpin-Mannopentose Comple 1e-25
1vbo_A149 Crystal Structure Of Artocarpin-Mannotriose Complex 1e-25
4ak4_A133 High Resolution Structure Of Galactose Binding Lect 1e-25
1jot_A133 Structure Of The Lectin Mpa Complexed With T-Antige 3e-25
1ugw_A133 Crystal Structure Of Jacalin- Gal Complex Length = 4e-25
4akb_A133 Structure Of Galactose Binding Lectin From Champeda 5e-25
1jac_A133 A Novel Mode Of Carbohydrate Recognition In Jacalin 1e-24
1toq_A133 Crystal Structure Of A Galactose Specific Lectin Fr 2e-24
4akd_A150 High Resolution Structure Of Mannose Binding Lectin 2e-24
2jz4_A299 Putative 32 Kda Myrosinase Binding Protein At3g1645 2e-16
1zgr_A 447 Crystal Structure Of The Parkia Platycephala Seed L 3e-16
3r50_A160 Structure Analysis Of A Wound-Inducible Lectin Ipom 1e-15
2bmy_A141 Banana Lectin Length = 141 1e-14
1x1v_A141 Structure Of Banana Lectin- Methyl-Alpha-Mannose Co 2e-14
1c3k_A147 Crystal Structure Of Helianthus Tuberosus Lectin Le 3e-12
1ouw_A152 Crystal Structure Of Calystegia Sepium Agglutinin L 6e-12
>pdb|1XXQ|A Chain A, Structure Of A Mannose-Specific Jacalin-Related Lectin From Morus Nigra Length = 161 Back     alignment and structure 
Iteration: 1

 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 100/154 (64%), Gaps = 12/154 (7%)
Query: 14  IVIGPWGGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGNRT 73
           I +G WGG GG +WDDG Y G+REI L++   I +  V+YD  G P T   H G      
Sbjct: 17  IEVGLWGGPGGNAWDDGSYTGIREINLSHGDAIGAFSVIYDLNGQPFTGPTHPG------ 70
Query: 74  AEICSIPTLLSFPIKLRFPEEFLISVSGH--YCPVVYGGSPVIRSLTFKSNKRTFGPFGV 131
               + P+  +  I L FP EFL+SVSG+      +  G  VIRSLTFK+NK+T+GP+G 
Sbjct: 71  ----NEPSFKTVKITLDFPNEFLVSVSGYTGVLARLATGKDVIRSLTFKTNKKTYGPYGK 126
Query: 132 EEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLS 165
           EEGTPF+  ++ GL+VGFKGRSG+ VDAIGF+LS
Sbjct: 127 EEGTPFSLPIENGLIVGFKGRSGFVVDAIGFHLS 160
>pdb|3P8S|A Chain A, Crystal Structure Of Single Chain Recombinant Jacalin Showing Highly Dynamic Posttranslational Excission Loop That Reduces Binding Affinity Length = 157 Back     alignment and structure
>pdb|1J4S|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity (Form 1) Length = 149 Back     alignment and structure
>pdb|1J4T|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity (Form 2) Length = 149 Back     alignment and structure
>pdb|1VBP|A Chain A, Crystal Structure Of Artocarpin-Mannopentose Complex Length = 149 Back     alignment and structure
>pdb|1VBO|A Chain A, Crystal Structure Of Artocarpin-Mannotriose Complex Length = 149 Back     alignment and structure
>pdb|4AK4|A Chain A, High Resolution Structure Of Galactose Binding Lectin From Champedak (cgb) Length = 133 Back     alignment and structure
>pdb|1JOT|A Chain A, Structure Of The Lectin Mpa Complexed With T-Antigen Disaccharide Length = 133 Back     alignment and structure
>pdb|1UGW|A Chain A, Crystal Structure Of Jacalin- Gal Complex Length = 133 Back     alignment and structure
>pdb|4AKB|A Chain A, Structure Of Galactose Binding Lectin From Champedak (cgb) With Galactose Length = 133 Back     alignment and structure
>pdb|1JAC|A Chain A, A Novel Mode Of Carbohydrate Recognition In Jacalin, A Moraceae Plant Lectin With A Beta-Prism Length = 133 Back     alignment and structure
>pdb|1TOQ|A Chain A, Crystal Structure Of A Galactose Specific Lectin From Artocarpus Hirsuta In Complex With Methyl-a-d-galactose Length = 133 Back     alignment and structure
>pdb|4AKD|A Chain A, High Resolution Structure Of Mannose Binding Lectin From Champedak (cmb) Length = 150 Back     alignment and structure
>pdb|2JZ4|A Chain A, Putative 32 Kda Myrosinase Binding Protein At3g16450.1 From Arabidopsis Thaliana Length = 299 Back     alignment and structure
>pdb|1ZGR|A Chain A, Crystal Structure Of The Parkia Platycephala Seed Lectin Length = 447 Back     alignment and structure
>pdb|3R50|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin From Sweet Potato Length = 160 Back     alignment and structure
>pdb|2BMY|A Chain A, Banana Lectin Length = 141 Back     alignment and structure
>pdb|1X1V|A Chain A, Structure Of Banana Lectin- Methyl-Alpha-Mannose Complex Length = 141 Back     alignment and structure
>pdb|1C3K|A Chain A, Crystal Structure Of Helianthus Tuberosus Lectin Length = 147 Back     alignment and structure
>pdb|1OUW|A Chain A, Crystal Structure Of Calystegia Sepium Agglutinin Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
1xxq_A161 Mannose-binding lectin; tetrameric B-prism fold, j 6e-54
3p8s_A157 Jacalin; hemeagglutinin, sugars, sugar binding P; 5e-49
3llz_A133 MPA, agglutinin alpha chain; maclura pomifera aggl 1e-47
1ouw_A152 Lectin, agglutinin; beta-prism fold, mannose-bindi 2e-44
1c3k_A147 Agglutinin; beta prism, jacalin-related, mannose, 2e-43
4ddn_A160 Ipomoelin; beta prism, carbohydrate binding protei 3e-43
2jz4_A299 Jasmonate inducible protein isolog; myrosinase bin 5e-43
2jz4_A 299 Jasmonate inducible protein isolog; myrosinase bin 2e-41
1zgr_A447 Mannose/glucose-specific lectin; beta-prism, sugar 4e-41
1zgr_A 447 Mannose/glucose-specific lectin; beta-prism, sugar 1e-38
1zgr_A 447 Mannose/glucose-specific lectin; beta-prism, sugar 4e-30
3mit_A141 Lectin; all beta sheet protein, beta prism-I fold, 9e-40
3apa_A141 Zymogen granule membrane protein 16; beta-prism fo 3e-29
2gud_A122 Griffithsin, GRFT; lectins, domain swapping, manno 2e-23
3aqg_A158 ZG16B/PAUF, zymogen granule protein 16 homolog B; 3e-23
2gux_A138 Griffithsin, GRFT; lectins, domain swapping, manno 7e-23
>1xxq_A Mannose-binding lectin; tetrameric B-prism fold, jacalin-fold, sugar binding protein; 1.80A {Morus nigra} PDB: 1xxr_A* 1j4t_A 1j4s_A 1j4u_A* 1vbp_A* 1vbo_A* Length = 161 Back     alignment and structure
 Score =  168 bits (427), Expect = 6e-54
 Identities = 77/165 (46%), Positives = 103/165 (62%), Gaps = 12/165 (7%)

Query: 3   GKDHASGQKKSIVIGPWGGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTA 62
                +G  ++I +G WGG GG +WDDG Y G+REI L++   I +  V+YD  G P T 
Sbjct: 6   TNTQTTGTSQTIEVGLWGGPGGNAWDDGSYTGIREINLSHGDAIGAFSVIYDLNGQPFTG 65

Query: 63  EKHGGVGGNRTAEICSIPTLLSFPIKLRFPEEFLISVSGHYCPV--VYGGSPVIRSLTFK 120
             H G   +            +  I L FP EFL+SVSG+   +  +  G  VIRSLTFK
Sbjct: 66  PTHPGNEPSFK----------TVKITLDFPNEFLVSVSGYTGVLARLATGKDVIRSLTFK 115

Query: 121 SNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLS 165
           +NK+T+GP+G EEGTPF+  ++ GL+VGFKGRSG+ VDAIGF+LS
Sbjct: 116 TNKKTYGPYGKEEGTPFSLPIENGLIVGFKGRSGFVVDAIGFHLS 160
>3p8s_A Jacalin; hemeagglutinin, sugars, sugar binding P; 2.00A {Artocarpus heterophyllus} Length = 157 Back     alignment and structure
>3llz_A MPA, agglutinin alpha chain; maclura pomifera agglutinin, MPA complex, GAL-beta-1, 3 lectin, sugar binding protein; HET: GAL NGA; 1.55A {Maclura pomifera} PDB: 3lly_A 1jot_A* 3lm1_A* 1m26_A* 1jac_A 1kuj_A* 1ku8_A* 1pxd_A* 1ugw_C* 1ugy_C* 1uh0_A* 1uh1_A* 1ws4_C* 1ws5_C* 1ugx_A* 1ugw_A* 1ugy_A* 1ws4_A* 1ws5_A* 1toq_A* ... Length = 133 Back     alignment and structure
>1ouw_A Lectin, agglutinin; beta-prism fold, mannose-binding, jacali related, sugar binding protein; 1.37A {Calystegia sepium} SCOP: b.77.3.1 Length = 152 Back     alignment and structure
>1c3k_A Agglutinin; beta prism, jacalin-related, mannose, sugar BIND protein; 2.00A {Helianthus tuberosus} SCOP: b.77.3.1 PDB: 1c3m_A* 1c3n_A* Length = 147 Back     alignment and structure
>4ddn_A Ipomoelin; beta prism, carbohydrate binding protein, carbohydrate/sugar sugar binding protein; HET: AMG; 1.90A {Ipomoea batatas} PDB: 3r50_A* 3r52_A* 3r51_A* Length = 160 Back     alignment and structure
>2jz4_A Jasmonate inducible protein isolog; myrosinase binding protein, AT3G16450.1, SAIL, stereo-array isotope labeling, structural genomics; NMR {Arabidopsis thaliana} Length = 299 Back     alignment and structure
>2jz4_A Jasmonate inducible protein isolog; myrosinase binding protein, AT3G16450.1, SAIL, stereo-array isotope labeling, structural genomics; NMR {Arabidopsis thaliana} Length = 299 Back     alignment and structure
>1zgr_A Mannose/glucose-specific lectin; beta-prism, sugar binding protein; 2.50A {Parkia platycephala} PDB: 1zgs_A* Length = 447 Back     alignment and structure
>1zgr_A Mannose/glucose-specific lectin; beta-prism, sugar binding protein; 2.50A {Parkia platycephala} PDB: 1zgs_A* Length = 447 Back     alignment and structure
>1zgr_A Mannose/glucose-specific lectin; beta-prism, sugar binding protein; 2.50A {Parkia platycephala} PDB: 1zgs_A* Length = 447 Back     alignment and structure
>3mit_A Lectin; all beta sheet protein, beta prism-I fold, mannose specific, binding protein; HET: MAN; 2.32A {Musa acuminata} PDB: 1x1v_A* 3miu_A* 3miv_A 2bmz_A* 2bmy_A* 2bn0_A* Length = 141 Back     alignment and structure
>3apa_A Zymogen granule membrane protein 16; beta-prism fold, sugar binding protein; 1.65A {Homo sapiens} Length = 141 Back     alignment and structure
>2gud_A Griffithsin, GRFT; lectins, domain swapping, mannose binding, HIV, SARS, sugar binding protein; HET: MAN BMA; 0.94A {Griffithsia} SCOP: b.77.3.1 PDB: 2guc_A* 2gty_A* 2gue_A* 2hyq_A* 2hyr_A* 2nu5_A* 2nuo_A* 3lky_A 3ll0_A 3ll2_A* 3ll1_A Length = 122 Back     alignment and structure
>3aqg_A ZG16B/PAUF, zymogen granule protein 16 homolog B; beta-prism fold, unknown function; 2.75A {Homo sapiens} Length = 158 Back     alignment and structure
>2gux_A Griffithsin, GRFT; lectins, domain swapping, mannose binding, HIV, sugar binding protein; 2.00A {Griffithsia} SCOP: b.77.3.1 Length = 138 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query200
1xxq_A161 Mannose-binding lectin; tetrameric B-prism fold, j 100.0
3p8s_A157 Jacalin; hemeagglutinin, sugars, sugar binding P; 100.0
1c3k_A147 Agglutinin; beta prism, jacalin-related, mannose, 100.0
1ouw_A152 Lectin, agglutinin; beta-prism fold, mannose-bindi 100.0
4ddn_A160 Ipomoelin; beta prism, carbohydrate binding protei 100.0
3mit_A141 Lectin; all beta sheet protein, beta prism-I fold, 100.0
3llz_A133 MPA, agglutinin alpha chain; maclura pomifera aggl 100.0
2jz4_A299 Jasmonate inducible protein isolog; myrosinase bin 100.0
3apa_A141 Zymogen granule membrane protein 16; beta-prism fo 100.0
2jz4_A 299 Jasmonate inducible protein isolog; myrosinase bin 100.0
1zgr_A447 Mannose/glucose-specific lectin; beta-prism, sugar 100.0
2gud_A122 Griffithsin, GRFT; lectins, domain swapping, manno 100.0
1zgr_A 447 Mannose/glucose-specific lectin; beta-prism, sugar 100.0
3aqg_A158 ZG16B/PAUF, zymogen granule protein 16 homolog B; 99.98
2gux_A138 Griffithsin, GRFT; lectins, domain swapping, manno 99.98
3apa_A141 Zymogen granule membrane protein 16; beta-prism fo 96.84
4gx7_A152 Cytolysin and hemolysin HLYA pore-forming toxin; l 96.65
3aqg_A158 ZG16B/PAUF, zymogen granule protein 16 homolog B; 96.46
4gx7_A152 Cytolysin and hemolysin HLYA pore-forming toxin; l 96.31
1c3k_A147 Agglutinin; beta prism, jacalin-related, mannose, 96.06
2gud_A122 Griffithsin, GRFT; lectins, domain swapping, manno 95.71
4ddn_A160 Ipomoelin; beta prism, carbohydrate binding protei 95.69
1ouw_A152 Lectin, agglutinin; beta-prism fold, mannose-bindi 95.61
2gux_A138 Griffithsin, GRFT; lectins, domain swapping, manno 95.58
3mit_A141 Lectin; all beta sheet protein, beta prism-I fold, 95.52
1xxq_A161 Mannose-binding lectin; tetrameric B-prism fold, j 95.19
1xez_A721 Hemolysin, cytolysin; pore-forming toxin, Pro-toxi 95.1
3llz_A133 MPA, agglutinin alpha chain; maclura pomifera aggl 94.35
3p8s_A157 Jacalin; hemeagglutinin, sugars, sugar binding P; 93.28
1xez_A721 Hemolysin, cytolysin; pore-forming toxin, Pro-toxi 93.12
>1xxq_A Mannose-binding lectin; tetrameric B-prism fold, jacalin-fold, sugar binding protein; 1.80A {Morus nigra} PDB: 1xxr_A* 1j4t_A 1j4s_A 1j4u_A* 1vbp_A* 1vbo_A* Back     alignment and structure
Probab=100.00  E-value=3.2e-41  Score=271.86  Aligned_cols=151  Identities=52%  Similarity=0.946  Sum_probs=136.6

Q ss_pred             CcCCCceecEEecceeCCCCcccccCCCCceEEEEEEeCCcEeEEEEEEecCCceEEecccCC-CCCcccceeeccCCcc
Q 037526            5 DHASGQKKSIVIGPWGGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGG-VGGNRTAEICSIPTLL   83 (200)
Q Consensus         5 ~~~~~~~~~~k~gp~GG~gG~~fdd~~~~~V~~I~V~~g~~Id~Iqf~Y~~~G~~~~~~~hG~-~gg~~~~e~~~~~~~~   83 (200)
                      ..|++++.++|++||||++|++|||..+.+|++|+|+++..|++|||+|+++|+.+++..||+ .++....|        
T Consensus         8 ~~~~~~~~~~k~g~~GG~gG~~~ddg~~~~v~~I~V~~g~~I~~I~f~Y~~~G~~~~~~~hG~~~gg~~~~~--------   79 (161)
T 1xxq_A            8 TQTTGTSQTIEVGLWGGPGGNAWDDGSYTGIREINLSHGDAIGAFSVIYDLNGQPFTGPTHPGNEPSFKTVK--------   79 (161)
T ss_dssp             CCCCSCCCCEEEEEEECSCSEEEECCCCSEEEEEEEEESSSEEEEEEEEEETTEEEECCCCCTTCTTSEEEE--------
T ss_pred             cccCCCccceEECCEECCCCccccCCCCCeeEEEEEEeCCEEEEEEEEEcCCCcEEECccCCCCCCCCcceE--------
Confidence            458999999999999999999999998899999999999999999999987898889999998 66544456        


Q ss_pred             eeceEecCCCceEEEEEEEEee--eecCCCCeEEEEEEEeCCCceeecccCCCCeEEEecCCCEEEEEEEecCCcccEEE
Q 037526           84 SFPIKLRFPEEFLISVSGHYCP--VVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIG  161 (200)
Q Consensus        84 ~~~~~L~~p~EyIt~IsG~~g~--~~~~~~~~I~sL~F~TNk~t~gpfG~~~G~~F~~~~~g~~IvGF~GrsG~~LdsIG  161 (200)
                         |.|++|+||||+|+|+|++  +......+|++|+|+||+++++|||...|++|++++++++|||||||++++||+||
T Consensus        80 ---~~L~~p~EyIt~vsG~~g~~~~~~~~~~~I~sL~F~Tnkg~~~pfG~~~G~~F~~~~~~g~IvGF~Gr~g~~ldaiG  156 (161)
T 1xxq_A           80 ---ITLDFPNEFLVSVSGYTGVLARLATGKDVIRSLTFKTNKKTYGPYGKEEGTPFSLPIENGLIVGFKGRSGFVVDAIG  156 (161)
T ss_dssp             ---EECCTTTCCEEEEEEEEECCTTTCSSCCEEEEEEEEESSCEEEEEECCCSEEEEEEEEECEEEEEEEEESSSEEEEE
T ss_pred             ---EEecCCCceEEEEEEEECCccccCCCCcEEEEEEEEECCCCcccccCCCCcEEEEeCCCCEEEEEEEEcCCeEEEEE
Confidence               9998899999999999986  32234579999999999999999999999999998877799999999999999999


Q ss_pred             EEEEe
Q 037526          162 FYLSK  166 (200)
Q Consensus       162 vy~~p  166 (200)
                      |||.|
T Consensus       157 vy~~p  161 (161)
T 1xxq_A          157 FHLSL  161 (161)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99986
>3p8s_A Jacalin; hemeagglutinin, sugars, sugar binding P; 2.00A {Artocarpus heterophyllus} Back     alignment and structure
>1c3k_A Agglutinin; beta prism, jacalin-related, mannose, sugar BIND protein; 2.00A {Helianthus tuberosus} SCOP: b.77.3.1 PDB: 1c3m_A* 1c3n_A* Back     alignment and structure
>1ouw_A Lectin, agglutinin; beta-prism fold, mannose-binding, jacali related, sugar binding protein; 1.37A {Calystegia sepium} SCOP: b.77.3.1 Back     alignment and structure
>4ddn_A Ipomoelin; beta prism, carbohydrate binding protein, carbohydrate/sugar sugar binding protein; HET: AMG; 1.90A {Ipomoea batatas} PDB: 3r50_A* 3r52_A* 3r51_A* Back     alignment and structure
>3mit_A Lectin; all beta sheet protein, beta prism-I fold, mannose specific, binding protein; HET: MAN; 2.32A {Musa acuminata} SCOP: b.77.3.0 PDB: 1x1v_A* 3miu_A* 3miv_A 2bmz_A* 2bmy_A* 2bn0_A* Back     alignment and structure
>3llz_A MPA, agglutinin alpha chain; maclura pomifera agglutinin, MPA complex, GAL-beta-1, 3 lectin, sugar binding protein; HET: GAL NGA; 1.55A {Maclura pomifera} PDB: 3lly_A 1jot_A* 3lm1_A* 1m26_A* 1jac_A 1kuj_A* 1ku8_A* 1pxd_A* 1ugw_C* 1ugy_C* 1uh0_A* 1uh1_A* 1ws4_C* 1ws5_C* 1ugx_A* 1ugw_A* 1ugy_A* 1ws4_A* 1ws5_A* 1toq_A* ... Back     alignment and structure
>2jz4_A Jasmonate inducible protein isolog; myrosinase binding protein, AT3G16450.1, SAIL, stereo-array isotope labeling, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>3apa_A Zymogen granule membrane protein 16; beta-prism fold, sugar binding protein; 1.65A {Homo sapiens} Back     alignment and structure
>2jz4_A Jasmonate inducible protein isolog; myrosinase binding protein, AT3G16450.1, SAIL, stereo-array isotope labeling, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>1zgr_A Mannose/glucose-specific lectin; beta-prism, sugar binding protein; 2.50A {Parkia platycephala} PDB: 1zgs_A* Back     alignment and structure
>2gud_A Griffithsin, GRFT; lectins, domain swapping, mannose binding, HIV, SARS, sugar binding protein; HET: MAN BMA; 0.94A {Griffithsia} SCOP: b.77.3.1 PDB: 2guc_A* 2gty_A* 2gue_A* 2hyq_A* 2hyr_A* 2nu5_A* 2nuo_A* 3lky_A 3ll0_A 3ll2_A* 3ll1_A Back     alignment and structure
>1zgr_A Mannose/glucose-specific lectin; beta-prism, sugar binding protein; 2.50A {Parkia platycephala} PDB: 1zgs_A* Back     alignment and structure
>3aqg_A ZG16B/PAUF, zymogen granule protein 16 homolog B; beta-prism fold, unknown function; 2.75A {Homo sapiens} Back     alignment and structure
>2gux_A Griffithsin, GRFT; lectins, domain swapping, mannose binding, HIV, sugar binding protein; 2.00A {Griffithsia} SCOP: b.77.3.1 Back     alignment and structure
>3apa_A Zymogen granule membrane protein 16; beta-prism fold, sugar binding protein; 1.65A {Homo sapiens} Back     alignment and structure
>4gx7_A Cytolysin and hemolysin HLYA pore-forming toxin; lectin, carbohydrate-binding domain, beta-prism, pore-formin hemolysin, glycan-binding; HET: MMA; 2.85A {Vibrio cholerae} Back     alignment and structure
>3aqg_A ZG16B/PAUF, zymogen granule protein 16 homolog B; beta-prism fold, unknown function; 2.75A {Homo sapiens} Back     alignment and structure
>4gx7_A Cytolysin and hemolysin HLYA pore-forming toxin; lectin, carbohydrate-binding domain, beta-prism, pore-formin hemolysin, glycan-binding; HET: MMA; 2.85A {Vibrio cholerae} Back     alignment and structure
>1c3k_A Agglutinin; beta prism, jacalin-related, mannose, sugar BIND protein; 2.00A {Helianthus tuberosus} SCOP: b.77.3.1 PDB: 1c3m_A* 1c3n_A* Back     alignment and structure
>2gud_A Griffithsin, GRFT; lectins, domain swapping, mannose binding, HIV, SARS, sugar binding protein; HET: MAN BMA; 0.94A {Griffithsia} SCOP: b.77.3.1 PDB: 2guc_A* 2gty_A* 2gue_A* 2hyq_A* 2hyr_A* 2nu5_A* 2nuo_A* 3lky_A 3ll0_A 3ll2_A* 3ll1_A Back     alignment and structure
>4ddn_A Ipomoelin; beta prism, carbohydrate binding protein, carbohydrate/sugar sugar binding protein; HET: AMG; 1.90A {Ipomoea batatas} PDB: 3r50_A* 3r52_A* 3r51_A* Back     alignment and structure
>1ouw_A Lectin, agglutinin; beta-prism fold, mannose-binding, jacali related, sugar binding protein; 1.37A {Calystegia sepium} SCOP: b.77.3.1 Back     alignment and structure
>2gux_A Griffithsin, GRFT; lectins, domain swapping, mannose binding, HIV, sugar binding protein; 2.00A {Griffithsia} SCOP: b.77.3.1 Back     alignment and structure
>3mit_A Lectin; all beta sheet protein, beta prism-I fold, mannose specific, binding protein; HET: MAN; 2.32A {Musa acuminata} SCOP: b.77.3.0 PDB: 1x1v_A* 3miu_A* 3miv_A 2bmz_A* 2bmy_A* 2bn0_A* Back     alignment and structure
>1xxq_A Mannose-binding lectin; tetrameric B-prism fold, jacalin-fold, sugar binding protein; 1.80A {Morus nigra} PDB: 1xxr_A* 1j4t_A 1j4s_A 1j4u_A* 1vbp_A* 1vbo_A* Back     alignment and structure
>1xez_A Hemolysin, cytolysin; pore-forming toxin, Pro-toxin, water- soluble monomer, beta-prism, beta-trefoil; HET: BOG; 2.30A {Vibrio cholerae} PDB: 3o44_A Back     alignment and structure
>3llz_A MPA, agglutinin alpha chain; maclura pomifera agglutinin, MPA complex, GAL-beta-1, 3 lectin, sugar binding protein; HET: GAL NGA; 1.55A {Maclura pomifera} PDB: 3lly_A 1jot_A* 3lm1_A* 1m26_A* 1jac_A 1kuj_A* 1ku8_A* 1pxd_A* 1ugw_C* 1ugy_C* 1uh0_A* 1uh1_A* 1ws4_C* 1ws5_C* 1ugx_A* 1ugw_A* 1ugy_A* 1ws4_A* 1ws5_A* 1toq_A* ... Back     alignment and structure
>3p8s_A Jacalin; hemeagglutinin, sugars, sugar binding P; 2.00A {Artocarpus heterophyllus} Back     alignment and structure
>1xez_A Hemolysin, cytolysin; pore-forming toxin, Pro-toxin, water- soluble monomer, beta-prism, beta-trefoil; HET: BOG; 2.30A {Vibrio cholerae} PDB: 3o44_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 200
g1ugx.1148 b.77.3.1 (B:,A:) Jacalin {Jackfruit (Artocarpus he 8e-47
d1vboa_149 b.77.3.1 (A:) Artocarpin {Jackfruit (Artocarpus he 2e-43
d1c3ma_145 b.77.3.1 (A:) Heltuba lectin {Jerusalem artishoke 5e-43
d1ouwa_151 b.77.3.1 (A:) Calystegia sepium agglutinin {Hedge 4e-41
d2guda1121 b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffith 4e-29
>d1vboa_ b.77.3.1 (A:) Artocarpin {Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]} Length = 149 Back     information, alignment and structure
>d1c3ma_ b.77.3.1 (A:) Heltuba lectin {Jerusalem artishoke (Helianthus tuberosus) [TaxId: 4233]} Length = 145 Back     information, alignment and structure
>d1ouwa_ b.77.3.1 (A:) Calystegia sepium agglutinin {Hedge bindweed (Calystegia sepium) [TaxId: 47519]} Length = 151 Back     information, alignment and structure
>d2guda1 b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffithsia) [TaxId: 35158]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query200
d1vboa_149 Artocarpin {Jackfruit (Artocarpus heterophyllus) [ 100.0
g1ugx.1148 Jacalin {Jackfruit (Artocarpus heterophyllus) [Tax 100.0
d1c3ma_145 Heltuba lectin {Jerusalem artishoke (Helianthus tu 100.0
d1ouwa_151 Calystegia sepium agglutinin {Hedge bindweed (Caly 100.0
d2guda1121 Griffithsin {Red alga (Griffithsia) [TaxId: 35158] 99.97
d2guda1121 Griffithsin {Red alga (Griffithsia) [TaxId: 35158] 95.68
d1c3ma_145 Heltuba lectin {Jerusalem artishoke (Helianthus tu 94.27
d1vboa_149 Artocarpin {Jackfruit (Artocarpus heterophyllus) [ 91.44
d1ouwa_151 Calystegia sepium agglutinin {Hedge bindweed (Caly 85.86
g1ugx.1148 Jacalin {Jackfruit (Artocarpus heterophyllus) [Tax 81.2
>d1vboa_ b.77.3.1 (A:) Artocarpin {Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Prism I
superfamily: Mannose-binding lectins
family: Mannose-binding lectins
domain: Artocarpin
species: Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]

Probab=100.00  E-value=6.1e-40  Score=259.07  Aligned_cols=144  Identities=51%  Similarity=0.967  Sum_probs=129.2

Q ss_pred             eecEEecceeCCCCcccccCCCCceEEEEEEeCCcEeEEEEEEecCCceEEecccCCCCCcccceeeccCCcceeceEec
Q 037526           11 KKSIVIGPWGGNGGTSWDDGIYHGVREITLAYDRCIDSIRVVYDKKGNPVTAEKHGGVGGNRTAEICSIPTLLSFPIKLR   90 (200)
Q Consensus        11 ~~~~k~gp~GG~gG~~fdd~~~~~V~~I~V~~g~~Id~Iqf~Y~~~G~~~~~~~hG~~gg~~~~e~~~~~~~~~~~~~L~   90 (200)
                      ++++|+|||||++|++|||.++.+|++|+|++++.|++|||.|+.+++..+...||+..+....+           +.|+
T Consensus         2 ~~~~k~GpwGG~gG~~~dd~~~~~v~~I~i~~g~~I~~i~f~Y~~~g~~~~~~~~gg~~g~~~~~-----------~~~~   70 (149)
T d1vboa_           2 SQTITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVK-----------IELK   70 (149)
T ss_dssp             CCCEEEEEEECSCSEEEECCCCSEEEEEEEEESSSEEEEEEEEEETTEEEECCCBCCCSCCEEEE-----------EECC
T ss_pred             CccEEEcCCcCCCCcccccCCCCCcEEEEEEECCeEEEEEEEEEcCCeEEEcCCCCCCCCCccee-----------EEcc
Confidence            57899999999999999999999999999999999999999998888888898998876655545           7777


Q ss_pred             CCCceEEEEEEEEeeee--cCCCCeEEEEEEEeCC-CceeecccCCCCeEEEecCCCEEEEEEEecCCcccEEEEEEE
Q 037526           91 FPEEFLISVSGHYCPVV--YGGSPVIRSLTFKSNK-RTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLS  165 (200)
Q Consensus        91 ~p~EyIt~IsG~~g~~~--~~~~~~I~sL~F~TNk-~t~gpfG~~~G~~F~~~~~g~~IvGF~GrsG~~LdsIGvy~~  165 (200)
                      +|+|||++|+|+|+++.  .+....|++|+|+||+ |+++|||...|++|++++++++|||||||+|++||+||||+.
T Consensus        71 ~p~E~it~vsGt~G~~~~~~~~~~~I~sL~f~Tn~gr~~g~~G~~~gt~F~~~~~g~~IvGF~GrsG~~ldaiGvYv~  148 (149)
T d1vboa_          71 FPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMS  148 (149)
T ss_dssp             TTTCCEEEEEEEEECCTTSSSCSCEEEEEEEEETTSCEEEEEECCCSEEEEEEEEECEEEEEEEEESSSEEEEEEEEE
T ss_pred             CccCeEEEEEEEECCcCCcCCcceEEEEEEEEccCCeecCCccCCCCeEEEEeCCCCEEEEEEEEcCCeEEEEEEEEE
Confidence            79999999999999752  1234679999999998 789999999999999988889999999999999999999996
>d1c3ma_ b.77.3.1 (A:) Heltuba lectin {Jerusalem artishoke (Helianthus tuberosus) [TaxId: 4233]} Back     information, alignment and structure
>d1ouwa_ b.77.3.1 (A:) Calystegia sepium agglutinin {Hedge bindweed (Calystegia sepium) [TaxId: 47519]} Back     information, alignment and structure
>d2guda1 b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffithsia) [TaxId: 35158]} Back     information, alignment and structure
>d2guda1 b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffithsia) [TaxId: 35158]} Back     information, alignment and structure
>d1c3ma_ b.77.3.1 (A:) Heltuba lectin {Jerusalem artishoke (Helianthus tuberosus) [TaxId: 4233]} Back     information, alignment and structure
>d1vboa_ b.77.3.1 (A:) Artocarpin {Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]} Back     information, alignment and structure
>d1ouwa_ b.77.3.1 (A:) Calystegia sepium agglutinin {Hedge bindweed (Calystegia sepium) [TaxId: 47519]} Back     information, alignment and structure