Citrus Sinensis ID: 037535

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHWL
Secondary Structure (PSIPRED)
cccccHHHHHHHcccccHHHHHHHHcccHHHHHHcccHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccccEEcccccccccccEEEEEEEccEEEEEcccccEEEEccccccEEEccccccccccccEEEEEEEEEccccccEEEEEEEEEEcccccccEEEEEEcccccEEEEccccccccccccccEEEcccEEEc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccEEEEEEEccccEEEccccccccccccccccccccccccccccccccEEEEEEEEccEEEEEEcccccEEEEccccccEEEEcccccccccccEEEEEEEEEccccccEEEEEEEEccccccccEEEEEEEcccccEEEEEcccccccccccccEEEEcEEEEc
Coil and Loop (DISEMBL)
maslptdikidilsrlpvksllRFKCMSKSFCSLIASQEFIKIHLKRSietnsnlslilsgtpapildssrywngkIFSASLdslnlgveldhpfknckgrtpiidscnglialkndengiafwnpstkehlilpkywgdlkdkVYMVVDGfgydavnddyKVVRLVHFVRENVEYTEVSVYSLRTnswrrirvdfpyyilhgwdgkfvdghvhwl
Flexible Loop (DISEMBL)
maslptdikidilsrlpvKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVrenveytevsvyslrtnswrriRVDFPYYILHGWDGKFVDGHVHWL
Low Complexity Region (SEG)
MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHWL
Disordered region (IsUnstruct)
******DIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHW*
Disordered Region (DISOPRED)
MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHWL
Disordered Region (DISEMBL)
MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHWL
Disordered Region (DISPRO)
*ASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHWL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHWL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q9SU30	413	F-box protein CPR30 OS=Ar	yes	no	0.935	0.489	0.360	3e-27
Q9SUY0	402	F-box protein At4g22390 O	no	no	0.935	0.502	0.336	3e-22
Q8GXC7	427	F-box/kelch-repeat protei	no	no	0.972	0.491	0.304	3e-16
Q9LIR8	364	F-box/kelch-repeat protei	no	no	0.870	0.516	0.323	1e-14
Q9LU24	360	Putative F-box protein At	no	no	0.837	0.502	0.276	2e-13
Q7X7A9	312	F-box protein At1g11270 O	no	no	0.925	0.641	0.321	3e-13
Q4PSN6	410	F-box/WD-40 repeat-contai	no	no	0.851	0.448	0.262	5e-12
Q9LX89	445	F-box protein At5g10340 O	no	no	0.981	0.476	0.311	3e-11
Q84X43	295	F-box only protein 8 OS=A	no	no	0.851	0.623	0.274	4e-11
Q9LFW0	438	Putative F-box protein At	no	no	0.916	0.452	0.288	1e-10

>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2

 Score =  121 bits (304), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/236 (36%), Positives = 125/236 (52%), Gaps = 34/236 (14%)

Query: 1   MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILS 60
           MA++P DI  DI  RLP K+L+R + +SK    LI   +FI+ HL R ++T  +L ++L 
Sbjct: 1   MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLR 60

Query: 61  GTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENG 120
           G              +++S  LDSL+   +++HP K   G T +  S NGLI L N    
Sbjct: 61  GAL------------RLYSVDLDSLDSVSDVEHPMKR-GGPTEVFGSSNGLIGLSNSPTD 107

Query: 121 IAFWNPSTKEHLILPKYWGDLKDKVYM---VVDGFGYDAVNDDYKVVRLVHFVRENVEYT 177
           +A +NPST++   LP    DL D       V  G GYD+V+DDYKVVR+V F  ++ +  
Sbjct: 108 LAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDEL 167

Query: 178 ------EVSVYSLRTNSWRRIR---------VDFPYYILH--GWDGKFVDGHVHWL 216
                 EV V+SL+ NSW+RI            F Y++L+  G+ G      +HW+
Sbjct: 168 GCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGY-GVLAGNSLHWV 222

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3

 Score =  105 bits (261), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 122/235 (51%), Gaps = 33/235 (14%)

Query: 1   MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILS 60
           MA  PTD+  ++  RL   +L++ + +SK   SLI S EF+  HL+R +ET  +L ++L 
Sbjct: 1   MAECPTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILLR 60

Query: 61  GTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENG 120
           G   P L         + +  LDS     ++ HP +   G T +  S NG+I L N    
Sbjct: 61  G---PRL---------LRTVELDSPENVSDIPHPLQ-AGGFTEVFGSFNGVIGLCNSPVD 107

Query: 121 IAFWNPSTKEHLILPKYWGDLKDKVYM---VVDGFGYDAVNDDYKVVRLVHF-VRENVEY 176
           +A +NPST++   LP    D  ++      V  G GYD+V DD+KVVR+V   ++E  + 
Sbjct: 108 LAIFNPSTRKIHRLPIEPIDFPERDITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKK 167

Query: 177 ----TEVSVYSLRTNSWRRIRVDFPYYIL-----------HGWDGKFVDGHVHWL 216
                EV V+SL+ NSW+R+ + F + IL            G+ G  V+ H+HW+
Sbjct: 168 FPCPVEVKVFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGY-GVVVNNHLHWI 221

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 119/246 (48%), Gaps = 36/246 (14%)

Query: 4   LPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSL----IL 59
           LP +I  +IL RLP KS+ RF+C+SK FC+L +   F KIHL   +   S  SL    I+
Sbjct: 36  LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIV 95

Query: 60  SGTPAPILDSSRYWNGKIFSASL-------DSLNLGVEL------DHPFK--------NC 98
           S      LD +   +G    A++       D  ++  E+      DH +         N 
Sbjct: 96  SSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKLNA 155

Query: 99  KGR----TPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKYWGDLK---DKVYMVVDG 151
           K        I+ S NGL+ +   E  +  +NP+T +   LP+ +       ++      G
Sbjct: 156 KSYRRNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYG 215

Query: 152 FGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNSWRRI-RVDFPYYILHGWDGKFVD 210
           FG+D + DDYK+V+LV    E++   + SVYSL+ +SWRRI  +++ +       G   +
Sbjct: 216 FGFDGLTDDYKLVKLVA-TSEDI--LDASVYSLKADSWRRICNLNYEHNDGSYTSGVHFN 272

Query: 211 GHVHWL 216
           G +HW+
Sbjct: 273 GAIHWV 278

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 97/198 (48%), Gaps = 10/198 (5%)

Query: 3   SLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGT 62
           +LP ++  +IL RLPVKSL RFKC+  S+ SLI+   F    LK ++   ++ +   + +
Sbjct: 13  NLPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFA---LKHALILETSKATTSTKS 69

Query: 63  PAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRT--PIIDSCNGLIALKND-EN 119
           P  ++ +SRY        SL + +     +H      GR    ++ +C+GL+    D + 
Sbjct: 70  PYGVITTSRYHLKSCCIHSLYNASTVYVSEHD-GELLGRDYYQVVGTCHGLVCFHVDYDK 128

Query: 120 GIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEV 179
            +  WNP+ K    L     +  D   +V  GFGYD   DDYKVV L+   R  V+  E 
Sbjct: 129 SLYLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQ-QRHQVK-IET 186

Query: 180 SVYSLRTNSWRRIRVDFP 197
            +YS R   WR     FP
Sbjct: 187 KIYSTRQKLWRS-NTSFP 203

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 43/224 (19%)

Query: 4   LPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGTP 63
           LP ++ I+IL RL +K L RF+C+ K++  LI    F         ET  ++S      P
Sbjct: 5   LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFT--------ETYRDMS------P 50

Query: 64  APILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDS----------CNGLIA 113
           A  +    +++   +        L VE  HP    K   P+  S          C+G + 
Sbjct: 51  AKFVS---FYDKNFYM-------LDVEGKHPVITNKLDFPLDQSMIDESTCVLHCDGTLC 100

Query: 114 LKNDENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVREN 173
           +    + +  WNP +K+  I+P   G  +D   +   GFGYD V+DDYKVV  +    + 
Sbjct: 101 VTLKNHTLMVWNPFSKQFKIVPNP-GIYQDSNIL---GFGYDPVHDDYKVVTFI----DR 152

Query: 174 VEYTEVSVYSLRTNSW-RRIRVDFPYYILHGWDGKFVDGHVHWL 216
           ++ +   V+  RT SW   +R+ +P +      G F+D +++W+
Sbjct: 153 LDVSTAHVFEFRTGSWGESLRISYPDWHYRDRRGTFLDQYLYWI 196

Arabidopsis thaliana (taxid: 3702)

>sp|Q7X7A9|FB4_ARATH F-box protein At1g11270 OS=Arabidopsis thaliana GN=At1g11270 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 100/224 (44%), Gaps = 24/224 (10%)

Query: 4   LPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGTP 63
           LP D+   IL RLPV+SLLRFKC+S  + S I SQ F +  L R +E+     L++S   
Sbjct: 35  LPHDVVGLILERLPVESLLRFKCVSNQWKSTIESQCFQERQLIRRMESRGPDVLVVSFAD 94

Query: 64  APILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPII-DSCNGLIALKNDENGIA 122
               D  +Y    +F +S+ S          F+     T I   SC GLI +    +   
Sbjct: 95  ----DEDKYGRKAVFGSSIVST---------FRFPTLHTLICYGSCEGLICIYCVYSPNI 141

Query: 123 FWNPSTKEHLILP-----KYWGD-LKDKVYMVVD---GFGYDAVNDDYKVVRLVHFVREN 173
             NP+TK H   P     ++  D  + K Y        FG D +N  YK V L +     
Sbjct: 142 VVNPATKWHRSCPLSNLQQFLDDKFEKKEYDFPTPKLAFGKDKLNGTYKQVWLYNSSEFR 201

Query: 174 V-EYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHWL 216
           + + T   V+    N+WR +    PY I    D  + DG VHWL
Sbjct: 202 LDDVTTCEVFDFSNNAWRYVHPASPYRINDYQDPVYSDGSVHWL 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q4PSN6|FBW1_ARATH F-box/WD-40 repeat-containing protein 1 OS=Arabidopsis thaliana GN=FBW1 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 45/229 (19%)

Query: 4   LPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHL----KRSIETNSNLSLIL 59
           LP ++  +IL R+P KSLLR K   K + +L   + FI  HL    +  I TN  + +I 
Sbjct: 38  LPFELFEEILCRVPTKSLLRLKLTCKRWLALFNDKRFIYKHLALVREHIIRTNQMVKII- 96

Query: 60  SGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDEN 119
                P++ +                     L + F+  KG    +  C+GL+    +  
Sbjct: 97  ----NPVVGACS----------------SFSLPNKFQ-VKGEIYTMVPCDGLLLCIFETG 135

Query: 120 GIAFWNPSTKE----HLILPKYWGDLKDKVYMVVDGFGYDAVN-DDYKVVRLVHFVRENV 174
            +A WNP   +     L+ P + G           G GYD ++ D YK++R V+ V    
Sbjct: 136 SMAVWNPCLNQVRWIFLLNPSFRG-------CSCYGIGYDGLSRDSYKILRFVNGVFTKN 188

Query: 175 EYT-------EVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHWL 216
           EY        EV +Y L++NSW+  +V   ++++    G  + G+++W+
Sbjct: 189 EYANTGSYKPEVDIYELKSNSWKTFKVSLDWHVVLRCKGLSLKGNMYWI 237

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX89|FB255_ARATH F-box protein At5g10340 OS=Arabidopsis thaliana GN=At5g10340 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 105/231 (45%), Gaps = 19/231 (8%)

Query: 4   LPTD-IKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSN----LSLI 58
           LP D I+  I+ RL VK+LL+FK +SK + S I S  F +  L   +  +S     L + 
Sbjct: 69  LPHDVIEYHIMVRLDVKTLLKFKSVSKQWMSTIQSPSFQERQLIHHLSQSSGDPHVLLVS 128

Query: 59  LSGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKN-D 117
           L    A   D S      + +  ++S    V++  P+++ K       SC+GLI L +  
Sbjct: 129 LYDPCARQQDPSISSFEALRTFLVESSAASVQIPTPWED-KLYFVCNTSCDGLICLFSFY 187

Query: 118 ENGIAFWNPSTKEHLILPK--YWGDLKDK--------VYMVVDGFGYDAVNDDYKVVRLV 167
           E      NP+T+ H   PK  Y     DK        V     GFG D ++  YK V L 
Sbjct: 188 ELPSIVVNPTTRWHRTFPKCNYQLVAADKGERHECFKVACPTPGFGKDKISGTYKPVWLY 247

Query: 168 HFVRE--NVEYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHWL 216
           +      N + T   V+   TN+WR +    P+ ILH  D  +VDG +HW 
Sbjct: 248 NSAELDLNDKPTTCEVFDFATNAWRYVFPASPHLILHTQDPVYVDGSLHWF 298

Arabidopsis thaliana (taxid: 3702)

>sp|Q84X43|FBX8_ARATH F-box only protein 8 OS=Arabidopsis thaliana GN=FBX8 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 98/208 (47%), Gaps = 24/208 (11%)

Query: 4   LPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGTP 63
           +P D+ I+IL+RLP KS++RFKC+SK + SL++S+ F             N  LI+   P
Sbjct: 41  IPQDLLIEILTRLPPKSVMRFKCVSKFWSSLLSSRYF------------CNRFLIVPSQP 88

Query: 64  AP-----ILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDE 118
            P     +LD   Y    I S++  +       D      K     +    G I    + 
Sbjct: 89  QPSLYMCLLDRYNYSKSLILSSAPSTSPYSFVFDQDLTIRKMGGFFLRILRGFIFFTRNL 148

Query: 119 NGIAFWNPSTKEHLILP--KYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEY 176
                +NP+T++ +ILP  K    +    Y ++    +D VND YK++  V +  +N   
Sbjct: 149 KA-RIYNPTTRQLVILPTIKESDIIAGPPYNILYFICHDPVNDRYKLLCTVSYASDNDLQ 207

Query: 177 ---TEVSVYSLRT-NSWRRIRVDFPYYI 200
              +E+ ++ L    SW+R+  +FP+++
Sbjct: 208 NLKSELWIFVLEAGGSWKRVANEFPHHV 235

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFW0|FB257_ARATH Putative F-box protein At5g15660 OS=Arabidopsis thaliana GN=At5g15660 PE=4 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 109/222 (49%), Gaps = 24/222 (10%)

Query: 3   SLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILS-- 60
            +P D+ I+IL RLP+KS+ RF  +SK + + I S +F K +  R   ++   +LI+S  
Sbjct: 27  EIPHDLVIEILERLPLKSVARFLTVSKLWATTIRSPDFRKSY--RGGSSSEPRTLIVSDL 84

Query: 61  --GTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDE 118
               P P L          F  S+ S +    L  PF   +         NGLI++    
Sbjct: 85  NFKEPNPKL--------HFFRPSISSPSFLSSLTCPFTYPRHEEYYYHHVNGLISVGYGT 136

Query: 119 NGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEY-- 176
           + I   NP+T + + LP+     K +  +V+  FGYD+V+D YKV+ +   +R + E   
Sbjct: 137 DQIVI-NPTTGKFITLPR----PKTRRKLVISFFGYDSVSDQYKVLCMTERLRGHPEEAS 191

Query: 177 TEVSVYSL--RTNSWRRIRVDFPYYILHGWDGKFVDGHVHWL 216
           ++  VY+L  +  SW+ I    P+     W+   ++G V+++
Sbjct: 192 SQHQVYTLGAKQKSWKMINCSIPHRPW-SWNAVCINGVVYYI 232

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
255583943	389	ubiquitin-protein ligase, putative [Rici	0.930	0.516	0.408	1e-32
224053103	408	predicted protein [Populus trichocarpa]	0.912	0.482	0.411	5e-31
224089629	396	f-box family protein [Populus trichocarp	0.953	0.520	0.396	6e-31
255570318	414	ubiquitin-protein ligase, putative [Rici	0.939	0.490	0.394	7e-30
356532341	392	PREDICTED: F-box protein CPR30-like [Gly	0.925	0.510	0.373	9e-28
224060349	364	predicted protein [Populus trichocarpa]	0.953	0.565	0.352	3e-27
224137296	419	predicted protein [Populus trichocarpa]	0.912	0.470	0.370	5e-27
255558886	358	ubiquitin-protein ligase, putative [Rici	0.935	0.564	0.392	9e-27
357448231	388	F-box protein [Medicago truncatula] gi|3	0.921	0.512	0.346	1e-26
356555728	394	PREDICTED: F-box protein CPR30-like [Gly	0.925	0.507	0.371	4e-26

>gi|255583943|ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/225 (40%), Positives = 129/225 (57%), Gaps = 24/225 (10%)

Query: 1   MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILS 60
           M++LP ++  +IL RL  K LL  +C+SK + +LI S  FI +HL  SIE+  NLS+IL 
Sbjct: 1   MSNLPLEMIAEILCRLTAKKLLCCRCVSKRWRTLIDSPTFIYLHLNHSIESPCNLSIILK 60

Query: 61  GTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENG 120
            +             +++S S D L+    LDHP         I+ SCNGL+ + N  + 
Sbjct: 61  SS-------------ELYSLSFDLLDNIQPLDHPLMCYNHGVKILGSCNGLLCICNIVDD 107

Query: 121 IAFWNPSTKEHLILPKYWGDLKDKVYMV-----VDGFGYDAVNDDYKVVRLVHFV---RE 172
           IA WNPS + H ++P    +LK    M      V GFGYD  NDDYK+VR+  F    R+
Sbjct: 108 IALWNPSIRAHRVVPYLPVELKRYFGMCSCRVSVFGFGYDLSNDDYKLVRIAQFGGVDRK 167

Query: 173 NVEYTEVSVYSLRTNSWRRIRVDFPYYILH-GWDGKFVDGHVHWL 216
           + E +EV V+SLR NSWRRI  D PY +L+ G +G + +G +HWL
Sbjct: 168 SFE-SEVKVFSLRKNSWRRI-ADMPYCVLYPGENGIYANGALHWL 210

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053103|ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|222844963|gb|EEE82510.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/231 (41%), Positives = 137/231 (59%), Gaps = 34/231 (14%)

Query: 7   DIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGTPAPI 66
           +I  DILSRLPVKSL RF+C+SKS+C  I S  FI  HLKRS + +++L+LIL       
Sbjct: 6   EITADILSRLPVKSLKRFRCVSKSWCKEIDSPYFINTHLKRSSQAHTHLNLILR------ 59

Query: 67  LDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAFWNP 126
            D++      + S    S+ L    ++P K+    T ++ SCNGL+AL N +  IA +NP
Sbjct: 60  -DATNLCTVDLDSPDFTSIELK---NNPLKSDDCATEVMGSCNGLLALLNSDFSIALYNP 115

Query: 127 STKEHLILP----KYWGDLKD-KVYMVVD--GFGYDAVNDDYKVVRLVHFVRENVE---Y 176
           ST+E  ++P    +   DL D KV  + +  GFG+D +N+DYKVVR +HF  ++ +   +
Sbjct: 116 STREKKMIPVSPLELPNDLDDSKVSSLFNFYGFGHDPINEDYKVVRFIHFYGDSPDGFFH 175

Query: 177 TEVSVYSLRTNSWRRIRVDFPY---YIL---------HGWDGKFVDGHVHW 215
            EV VYSL++NSW+RI  D+PY   +IL          G+ G F +  VHW
Sbjct: 176 CEVKVYSLKSNSWKRID-DYPYDLRFILPPDYHPRCRRGY-GVFANSAVHW 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089629|ref|XP_002308787.1| f-box family protein [Populus trichocarpa] gi|222854763|gb|EEE92310.1| f-box family protein [Populus trichocarpa]

 Score =  139 bits (351), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 90/227 (39%), Positives = 131/227 (57%), Gaps = 21/227 (9%)

Query: 1   MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILS 60
           M+ LP ++  +IL RLP K LL  + +SK +C+LI    F+K+HLK S++T+SNL +IL 
Sbjct: 1   MSGLPLEMIAEILCRLPAKELLCCRSVSKPWCALIDGPNFVKLHLKHSMDTSSNLYIILR 60

Query: 61  GTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENG 120
            T         Y + +      D + L  EL+HP         ++ S NGL+ + N  + 
Sbjct: 61  TT-----SHVHYMDFEQNLVLNDCVTLK-ELNHPLMCYNHGIKVLGSVNGLLCISNVVDD 114

Query: 121 IAFWNPSTKEHLILP-------KYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHF---V 170
           IA WNPST++H ++P       +Y+G     VY  V GFGYD+V DDYK+VR+  F    
Sbjct: 115 IAVWNPSTRKHRVVPFLPIELKRYFGTKSCSVY--VFGFGYDSVRDDYKLVRIAQFGGGG 172

Query: 171 RENVEYTEVSVYSLRTNSWRRIRVDFPYYILH-GWDGKFVDGHVHWL 216
           + + E +EV VYSLR  SWRRI  D PY + + G +G F +G +HW+
Sbjct: 173 KRSFE-SEVKVYSLRKQSWRRIG-DMPYCVHYPGANGVFANGALHWV 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570318|ref|XP_002526119.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223534616|gb|EEF36313.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  136 bits (342), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/228 (39%), Positives = 131/228 (57%), Gaps = 25/228 (10%)

Query: 1   MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILS 60
           +  LP ++  +IL+RLPV  LLRF+ +SKS+C+ I    FIK HLK+S ETNSNL+LI +
Sbjct: 2   LEKLPPELLTEILTRLPVDCLLRFRSISKSWCAKIDDPNFIKTHLKKSRETNSNLTLIFA 61

Query: 61  GTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFK---NCKGRTPIIDSCNGLIALKND 117
           G+               ++ +LDSLN  ++L++P K   +      I+ SCNGL+   N 
Sbjct: 62  GSHPDYF----------YNVNLDSLNSIIKLENPIKGPTDASHNIKIVGSCNGLLCFGNA 111

Query: 118 ENGIAFWNPSTKEHLILPKYWGDLKDKVYMV----VDGFGYDAVNDDYKVVRLVHFVREN 173
              I   NPST++H +LP    D   K   V      GFG D+V+DDYKV+RL  ++  +
Sbjct: 112 SGRITLMNPSTRKHKVLPFLRMDASVKGKSVWGAWAFGFGCDSVHDDYKVIRLGQYLDFS 171

Query: 174 VEY--TEVSVYSLRTNSWRRIRVDFPYYILHGWD---GKFVDGHVHWL 216
           ++   T+  VYSL++NSWR+I  D    I+ G+D   G  V   +HWL
Sbjct: 172 LQQFETDTMVYSLKSNSWRKI--DGMSCII-GFDQKMGVLVGEALHWL 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532341|ref|XP_003534732.1| PREDICTED: F-box protein CPR30-like [Glycine max]

 Score =  129 bits (324), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 122/222 (54%), Gaps = 22/222 (9%)

Query: 4   LPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGTP 63
           LP ++  DILSRLP KSLLRF+  SKS+ SLI SQ F  +HL RS+   SN +LIL    
Sbjct: 5   LPREVVTDILSRLPAKSLLRFRSTSKSWKSLIDSQHFNSVHLSRSLSLTSNTTLILR--- 61

Query: 64  APILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAF 123
              LDS       ++  +  +L+  + L+HP         ++ SCNGL+ + N  + IAF
Sbjct: 62  ---LDSD------LYQTNFPTLDPPLFLNHPLMCYSNNITLLGSCNGLLCISNVADDIAF 112

Query: 124 WNPSTKEHLILPKYWGDLK----DKVYMV--VDGFGYDAVNDDYKVVRLVHFV--RENVE 175
           WNPS ++H ILP      +    D       V GFG+D  + DYK+VR+ +FV  ++   
Sbjct: 113 WNPSLRQHRILPSLPLPRRRLHPDTTLFAARVYGFGFDHTSPDYKLVRISYFVDLQDRSF 172

Query: 176 YTEVSVYSLRTNSWRRIRVDFPYYILHGWD-GKFVDGHVHWL 216
            ++V +Y+LR N+W+ +    PY +      G FV   +HW+
Sbjct: 173 DSQVKLYTLRANAWKTL-PSMPYALCCARTMGVFVGNSLHWV 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060349|ref|XP_002300155.1| predicted protein [Populus trichocarpa] gi|222847413|gb|EEE84960.1| predicted protein [Populus trichocarpa]

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 124/227 (54%), Gaps = 21/227 (9%)

Query: 1   MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETN--SNLSLI 58
           M+ LP DI +DIL+ LPVKSL+RFKC+ K +  LI+   F+K+HLKR+IE N  +   L+
Sbjct: 1   MSKLPQDIIVDILTYLPVKSLVRFKCVCKPWQLLISDPRFVKLHLKRAIEGNNINRQRLL 60

Query: 59  LSGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTP------IIDSCNGLI 112
           ++  P         ++   F A+ D   +   ++ P+ +   RT       I  SC+GL+
Sbjct: 61  VAAEP--------LYSSVDFEAASDGDGINAVMELPYPSAASRTESFAFASIRGSCDGLV 112

Query: 113 ALKN--DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYK-VVRLVHF 169
            ++N  D + +  WNPST+E   LPK    ++   ++   G GYD+  DDYK V+  +  
Sbjct: 113 CIRNGGDVHDMFLWNPSTRESKKLPKPSSSVQKHGFLT--GLGYDSTIDDYKLVIACLTT 170

Query: 170 VRENVEYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHWL 216
              + +     V++L+TNSWRRI+       L G  G F +G +HWL
Sbjct: 171 ANGSHQIMAPEVFTLKTNSWRRIQGIHSGITLEGGAGVFWNGALHWL 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137296|ref|XP_002322522.1| predicted protein [Populus trichocarpa] gi|222867152|gb|EEF04283.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/251 (37%), Positives = 129/251 (51%), Gaps = 54/251 (21%)

Query: 1   MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILS 60
           M+ +P +I  DI  +LPVKSLLRF+ +SK  CSLI   +FIK HL  SI   SN S+IL 
Sbjct: 1   MSKIPHEIITDIFQQLPVKSLLRFRSLSKPICSLIDGPDFIKFHLYHSITAKSNHSVIL- 59

Query: 61  GTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENG 120
                     + W+  +F+   D+L+  VE+ H      G T +I S NGL+ L++ E  
Sbjct: 60  ----------KEWD--LFTVDFDTLSDAVEVKHHPLYAAGGTEVIGSVNGLVFLRHSERN 107

Query: 121 IAFWNPSTKEHL------ILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVREN- 173
           +A +N ST+E        I P     +   VY    GFGYD+V DDYKVVR+  FVRE+ 
Sbjct: 108 LAVYNLSTREWKKCFVVEIKPPRRDLITGYVYY---GFGYDSVGDDYKVVRMAQFVREDE 164

Query: 174 ----------------VEYTEVSVYSLRTNSWRRIRVDFP----------YYILH--GWD 205
                            EY EV VYSL+ + W++I  D P          +++LH  G+ 
Sbjct: 165 GGGGGGGYGDGGGGLGCEY-EVRVYSLKNDKWKKIE-DLPICLKLLSKQFFHVLHRRGY- 221

Query: 206 GKFVDGHVHWL 216
           G F    +HW+
Sbjct: 222 GVFAGHALHWI 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558886|ref|XP_002520466.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223540308|gb|EEF41879.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  125 bits (315), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/227 (39%), Positives = 122/227 (53%), Gaps = 25/227 (11%)

Query: 1   MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLIL- 59
           M+SL  DI  D+L RLPVK+LLRF+C+SKS+C+LI + +FIK HL  SI+T     LIL 
Sbjct: 1   MSSLFPDIIFDVLLRLPVKTLLRFRCISKSYCTLIDNPDFIKAHLDTSIQTKPRKKLILL 60

Query: 60  ---SGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKN 116
              S   A    +    NG +           ++L  P K+    T I+ SCN L+ L  
Sbjct: 61  RHQSNGVAEFYAADH--NGGLIDP--------IKLKSPIKSKSNGTRIVGSCNSLVLLMQ 110

Query: 117 DENGIAFWNPSTKEHLILPKYWGDLK--DKVYMVVD--GFGYDAVNDDYKVVRLVHFVRE 172
           + + +  WNP T ++ ILP+   +       Y+  D  G GYDA +DDYKVVR +   R 
Sbjct: 111 NTDKLLLWNPFTTQYKILPEPQREKATFTSQYLQYDVFGLGYDAASDDYKVVR-IQKCRS 169

Query: 173 NVEYTEVSVYSLRTNSWRRIRVDFP---YYILHGWDGKFVDGHVHWL 216
             +   V +YSLR+NSW R+  DFP   Y       GK V G ++WL
Sbjct: 170 KKD--GVGIYSLRSNSWTRLH-DFPCDNYEFDWTAMGKHVSGTLYWL 213

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448231|ref|XP_003594391.1| F-box protein [Medicago truncatula] gi|355483439|gb|AES64642.1| F-box protein [Medicago truncatula]

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 126/234 (53%), Gaps = 35/234 (14%)

Query: 1   MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILS 60
           MA LP +I  +I SRLPVKSLLRF+  SKS  SLI S +FI +HL+ S+    N +LIL 
Sbjct: 1   MADLPPEILSEIFSRLPVKSLLRFRSTSKSLKSLIDSHKFINLHLQNSL----NFNLILR 56

Query: 61  GTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDE-- 118
                           ++     +L   V L+HPF +      ++ SCNGL+A+ N E  
Sbjct: 57  R------------KTDLYHLHFPNLTTAVPLNHPFIHHSNNIALLGSCNGLLAISNGEIA 104

Query: 119 -------NGIAFWNPSTKEHLILPKYWGDL-----KDKVYMVVDGFGYDAVNDDYKVVRL 166
                  N IAF NP+ ++H I+P     +      D + + V GFG+D+++ DYK++R+
Sbjct: 105 FTNPYSANEIAFCNPTIRKHRIIPYLPLPIPSRSQSDNIALCVHGFGFDSLSADYKLLRI 164

Query: 167 VHFV---RENVEYTEVSVYSLRTNSWRRIRVDFPYYILHGWD-GKFVDGHVHWL 216
             FV       + + ++++S +TNSW+ +  D PY + +    G FV+  +HW+
Sbjct: 165 SWFVDLQHHTFDNSHLTLFSSKTNSWKTLP-DMPYILYYTLTMGVFVENSLHWI 217

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555728|ref|XP_003546182.1| PREDICTED: F-box protein CPR30-like [Glycine max]

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 120/221 (54%), Gaps = 21/221 (9%)

Query: 4   LPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGTP 63
           LP ++  +ILSRLPV+SLLRF+  SKS+ SLI SQ    +HL RS+   SN SLIL    
Sbjct: 5   LPREVLTEILSRLPVRSLLRFRSTSKSWKSLIDSQHLNWLHLTRSLTLTSNTSLILR--- 61

Query: 64  APILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAF 123
              +DS       ++  +  +L+  V L+HP         ++ SCNGL+ + N  + IAF
Sbjct: 62  ---VDSD------LYQTNFPTLDPPVSLNHPLMCYSNSITLLGSCNGLLCISNVADDIAF 112

Query: 124 WNPSTKEHLILPKYWGDLK---DKVYMV--VDGFGYDAVNDDYKVVRLVHFV--RENVEY 176
           WNPS ++H ILP      +   D       V GFG+D    DYK+VR+ +FV   +    
Sbjct: 113 WNPSLRQHRILPYLPVPRRRHPDTTLFAARVCGFGFDHKTRDYKLVRISYFVDLHDRSFD 172

Query: 177 TEVSVYSLRTNSWRRIRVDFPYYILHGWD-GKFVDGHVHWL 216
           ++V +Y+LR N+W+ +    PY +      G FV   +HW+
Sbjct: 173 SQVKLYTLRANAWKTL-PSLPYALCCARTMGVFVGNSLHWV 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2135615	413	CPR1 "AT4G12560" [Arabidopsis	0.930	0.486	0.362	4.5e-27
TAIR|locus:2127465	402	AT4G22390 "AT4G22390" [Arabido	0.935	0.502	0.340	3e-22
TAIR|locus:2082410	427	AT3G06240 "AT3G06240" [Arabido	0.509	0.257	0.316	1.1e-19
TAIR|locus:2076196	364	AT3G23880 "AT3G23880" [Arabido	0.953	0.565	0.305	1.4e-18
TAIR|locus:2094947	360	AT3G16210 "AT3G16210" [Arabido	0.550	0.330	0.279	4.3e-16
TAIR|locus:2202099	312	AT1G11270 "AT1G11270" [Arabido	0.930	0.644	0.327	3.9e-15
TAIR|locus:2143186	438	AT5G15660 "AT5G15660" [Arabido	0.921	0.454	0.287	1.3e-13
TAIR|locus:2075790	370	AT3G10430 "AT3G10430" [Arabido	0.888	0.518	0.311	5e-13
TAIR|locus:2075591	360	AT3G47150 "AT3G47150" [Arabido	0.791	0.475	0.295	6.7e-13
TAIR|locus:2090482	381	AT3G17570 "AT3G17570" [Arabido	0.888	0.503	0.278	1.2e-12

TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 86/237 (36%), Positives = 128/237 (54%)

Query:     1 MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILS 60
             MA++P DI  DI  RLP K+L+R + +SK    LI   +FI+ HL R ++T  +L ++L 
Sbjct:     1 MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLR 60

Query:    61 GTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENG 120
             G              +++S  LDSL+   +++HP K   G T +  S NGLI L N    
Sbjct:    61 GAL------------RLYSVDLDSLDSVSDVEHPMKR-GGPTEVFGSSNGLIGLSNSPTD 107

Query:   121 IAFWNPSTKEHLILPKYWGDLKD----KVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEY 176
             +A +NPST++   LP    DL D    + Y V  G GYD+V+DDYKVVR+V F  ++ + 
Sbjct:   108 LAVFNPSTRQIHRLPPSSIDLPDGSSTRGY-VFYGLGYDSVSDDYKVVRMVQFKIDSEDE 166

Query:   177 T------EVSVYSLRTNSWRRIR-----VD----FPYYILH--GWDGKFVDGHVHWL 216
                    EV V+SL+ NSW+RI      +     F Y++L+  G+ G      +HW+
Sbjct:   167 LGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGY-GVLAGNSLHWV 222

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0042177 "negative regulation of protein catabolic process" evidence=IMP

TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 80/235 (34%), Positives = 123/235 (52%)

Query:     1 MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILS 60
             MA  PTD+  ++  RL   +L++ + +SK   SLI S EF+  HL+R +ET  +L ++L 
Sbjct:     1 MAECPTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILLR 60

Query:    61 GTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENG 120
             G   P L         + +  LDS     ++ HP +   G T +  S NG+I L N    
Sbjct:    61 G---PRL---------LRTVELDSPENVSDIPHPLQ-AGGFTEVFGSFNGVIGLCNSPVD 107

Query:   121 IAFWNPSTKEHLILPKYWGDLKDKVYM---VVDGFGYDAVNDDYKVVRLVHF-VRENVEY 176
             +A +NPST++   LP    D  ++      V  G GYD+V DD+KVVR+V   ++E  + 
Sbjct:   108 LAIFNPSTRKIHRLPIEPIDFPERDITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKK 167

Query:   177 ----TEVSVYSLRTNSWRRIRVDFPYYIL------H-----GWDGKFVDGHVHWL 216
                  EV V+SL+ NSW+R+ + F + IL      H     G+ G  V+ H+HW+
Sbjct:   168 FPCPVEVKVFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGY-GVVVNNHLHWI 221

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 37/117 (31%), Positives = 64/117 (54%)

Query:   104 IIDSCNGLIALKNDENGIAFWNPSTKEHLILPKYWGDLK---DKVYMVVDGFGYDAVNDD 160
             I+ S NGL+ +   E  +  +NP+T +   LP+ +       ++      GFG+D + DD
Sbjct:   165 IVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTDD 224

Query:   161 YKVVRLVHFVRENVEYTEVSVYSLRTNSWRRI-RVDFPYYILHGWDGKFVDGHVHWL 216
             YK+V+LV    E++   + SVYSL+ +SWRRI  +++ +       G   +G +HW+
Sbjct:   225 YKLVKLVA-TSEDI--LDASVYSLKADSWRRICNLNYEHNDGSYTSGVHFNGAIHWV 278

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 67/219 (30%), Positives = 108/219 (49%)

Query:     3 SLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGT 62
             +LP ++  +IL RLPVKSL RFKC+  S+ SLI+   F    LK ++   ++ +   + +
Sbjct:    13 NLPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFA---LKHALILETSKATTSTKS 69

Query:    63 PAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRT--PIIDSCNGLIALKND-EN 119
             P  ++ +SRY        SL + +     +H  +   GR    ++ +C+GL+    D + 
Sbjct:    70 PYGVITTSRYHLKSCCIHSLYNASTVYVSEHDGE-LLGRDYYQVVGTCHGLVCFHVDYDK 128

Query:   120 GIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEV 179
              +  WNP+ K    L     +  D   +V  GFGYD   DDYKVV L+   R  V+  E 
Sbjct:   129 SLYLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQ-QRHQVKI-ET 186

Query:   180 SVYSLRTNSWRRIRVDFPYYIL---HGWDGKFVDGHVHW 215
              +YS R   WR     FP  ++       G +++G ++W
Sbjct:   187 KIYSTRQKLWRS-NTSFPSGVVVADKSRSGIYINGTLNW 224

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2094947 AT3G16210 "AT3G16210" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
 Identities = 36/129 (27%), Positives = 67/129 (51%)

Query:    90 ELDHPF-KNCKGRTPIIDSCNGLIALKNDENGIAFWNPSTKEHLILPKYWGDLKDKVYMV 148
             +LD P  ++    +  +  C+G + +    + +  WNP +K+  I+P   G  +D   + 
Sbjct:    76 KLDFPLDQSMIDESTCVLHCDGTLCVTLKNHTLMVWNPFSKQFKIVPNP-GIYQDSNIL- 133

Query:   149 VDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNSW-RRIRVDFPYYILHGWDGK 207
               GFGYD V+DDYKVV  +    + ++ +   V+  RT SW   +R+ +P +      G 
Sbjct:   134 --GFGYDPVHDDYKVVTFI----DRLDVSTAHVFEFRTGSWGESLRISYPDWHYRDRRGT 187

Query:   208 FVDGHVHWL 216
             F+D +++W+
Sbjct:   188 FLDQYLYWI 196

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2202099 AT1G11270 "AT1G11270" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 73/223 (32%), Positives = 100/223 (44%)

Query:     4 LPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGTP 63
             LP D+   IL RLPV+SLLRFKC+S  + S I SQ F +  L R +E+     L++S   
Sbjct:    35 LPHDVVGLILERLPVESLLRFKCVSNQWKSTIESQCFQERQLIRRMESRGPDVLVVSFAD 94

Query:    64 APILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGIAF 123
                 D  +Y    +F +S+ S      L H    C G      SC GLI +    +    
Sbjct:    95 ----DEDKYGRKAVFGSSIVSTFRFPTL-HTLI-CYG------SCEGLICIYCVYSPNIV 142

Query:   124 WNPSTKEHLILP-----KYWGD-LKDKVYMVVD---GFGYDAVNDDYKVVRLVHFVRENV 174
              NP+TK H   P     ++  D  + K Y        FG D +N  YK V L +     +
Sbjct:   143 VNPATKWHRSCPLSNLQQFLDDKFEKKEYDFPTPKLAFGKDKLNGTYKQVWLYNSSEFRL 202

Query:   175 E-YTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHWL 216
             +  T   V+    N+WR +    PY I    D  + DG VHWL
Sbjct:   203 DDVTTCEVFDFSNNAWRYVHPASPYRINDYQDPVYSDGSVHWL 245

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010286 "heat acclimation" evidence=IEP

TAIR|locus:2143186 AT5G15660 "AT5G15660" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 63/219 (28%), Positives = 111/219 (50%)

Query:     4 LPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGTP 63
             +P D+ I+IL RLP+KS+ RF  +SK + + I S +F K +  R   ++   +LI+S   
Sbjct:    28 IPHDLVIEILERLPLKSVARFLTVSKLWATTIRSPDFRKSY--RGGSSSEPRTLIVSDL- 84

Query:    64 APILDSSRYWNGKI--FSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDENGI 121
                  + +  N K+  F  S+ S +    L  PF   +         NGLI++    + I
Sbjct:    85 -----NFKEPNPKLHFFRPSISSPSFLSSLTCPFTYPRHEEYYYHHVNGLISVGYGTDQI 139

Query:   122 AFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEY--TEV 179
                NP+T + + LP+     K +  +V+  FGYD+V+D YKV+ +   +R + E   ++ 
Sbjct:   140 VI-NPTTGKFITLPRP----KTRRKLVISFFGYDSVSDQYKVLCMTERLRGHPEEASSQH 194

Query:   180 SVYSL--RTNSWRRIRVDFPYYILHGWDGKFVDGHVHWL 216
              VY+L  +  SW+ I    P+     W+   ++G V+++
Sbjct:   195 QVYTLGAKQKSWKMINCSIPHRPW-SWNAVCINGVVYYI 232

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075790 AT3G10430 "AT3G10430" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 5.0e-13, P = 5.0e-13
 Identities = 71/228 (31%), Positives = 109/228 (47%)

Query:     2 ASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQE-FIKIHLKRSIETNSNLSLILS 60
             +SLP D+ ++IL R P +SLLRFK   K +  LI++ + F+  HL +S  T   L  I +
Sbjct:     3 SSLPFDLILEILQRTPAESLLRFKSTCKKWYELISNDKRFMYKHLDKS--TKRFLR-IEN 59

Query:    61 GTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFK---NCKGRTPIIDSCNGLIALKND 117
                  ILD       +I + S     +  EL H +    +C G   ++  C     L +D
Sbjct:    60 RERVQILDPVT----EILAVS----TIPNELRHKYFTLIHCDGL--MLGMCYE--ELGSD 107

Query:   118 ENGIAFWNPSTKE-HLILPK-----YWGDLKDKVYMVVDGFGYDAV-NDDYKVVRLVHFV 170
              N +A WNP  ++   I P      YWG   D  Y+   GFGYD    D+YK++R  +  
Sbjct:   108 PN-LAVWNPVMRKIKWIKPSPPLVCYWGS--D--YL---GFGYDKTFRDNYKILRFTYLG 159

Query:   171 RENVE--YTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHWL 216
              ++ +  Y +  +Y   + SWR I   F   I    DG  V+G ++W+
Sbjct:   160 DDDDDESYPKCQIYEFNSGSWRSIEAKFDGEIDVEVDGVSVNGSMYWI 207

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075591 AT3G47150 "AT3G47150" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
 Identities = 54/183 (29%), Positives = 91/183 (49%)

Query:     4 LPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLI----L 59
             +P D++I+IL RLPVKSLLRF+C+SK +CS+I S +F   H   +  +     LI     
Sbjct:    12 IPLDLQINILLRLPVKSLLRFRCVSKLWCSIITSHDFRNRHFNITSSSAPPRLLIAFQDF 71

Query:    60 SGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPIIDSCNGLIALKNDEN 119
              G    ++ S    N  + S+S  S  +  + D       GR  + ++  GL   ++   
Sbjct:    72 YGEKLLLVSSP---NPNVSSSSTSSCCVPYK-DLSKVEINGRK-VYNAVWGLTCFESRLK 126

Query:   120 GIAFWNPSTKEHLILPKY-WGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTE 178
              +   NPST+E  + P+  + +  D    ++   GYD + D YKV+ + + +   +EY  
Sbjct:   127 -VGICNPSTRELHMFPQIKFKNYPDIFPCIMYFLGYDRIEDQYKVLAIDN-LPWRLEYKV 184

Query:   179 VSV 181
             V +
Sbjct:   185 VPI 187

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090482 AT3G17570 "AT3G17570" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 61/219 (27%), Positives = 100/219 (45%)

Query:     4 LPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLILSGTP 63
             LP D++ +ILSR+P  SL + K   K + +L    EF+K H+ R+ E       ++S   
Sbjct:     5 LPRDLETEILSRVPATSLQKLKPTCKRWYTLFKDPEFLKKHVGRA-ERE-----VIS--- 55

Query:    64 APILDSSRYWNGKIFSASLDSLNLGVELDHPFKNCKGRTPI----IDSCNGLIALKNDEN 119
                L S R ++    S +L  ++  VE+     + K    +    I  CNGL+    D++
Sbjct:    56 ---LMSLRVYS---LSVNLSGIHSSVEMTGMLNSLKDSEDVKISDITECNGLLLCTTDDS 109

Query:   120 GIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDD---YKVVRLVHFVRENVEY 176
              +  WNP T E   +P Y  +   ++Y      GYD  N     YK++R  H + +   Y
Sbjct:   110 RLVVWNPYTGETRWIP-YKSNSPYEMYQKFV-LGYDNTNKSRYSYKILRCYHGLID-FGY 166

Query:   177 TEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHW 215
              E  +Y   ++SWRR   + P        G  + G+ +W
Sbjct:   167 -EFEIYEFNSHSWRRFYDNSPNCSFES-KGVTLKGNTYW 203

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	1e-14
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	3e-06
pfam00646	48	pfam00646, F-box, F-box domain	1e-05
pfam12937	47	pfam12937, F-box-like, F-box-like	8e-04

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 4/112 (3%)

Query: 105 IDSCNGLIALKNDENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVV 164
           +  C+GLI        +  WNPST +   LP       +K        GYD +   YKV+
Sbjct: 1   VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDT-YFLGYDPIEKQYKVL 58

Query: 165 RLVHFVRENVEYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHWL 216
                     +  E  VY+L +NSWR I    P++ L    G  ++G +++L
Sbjct: 59  CFSDRSGNRNQS-EHQVYTLGSNSWRTIECSPPHHPLKSR-GVCINGVLYYL 108

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 42.4 bits (101), Expect = 3e-06
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 4  LPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIH 44
          LP +I  +ILS+L  K LLR + +S+ + SLI S +F    
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41

Length = 41

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 3  SLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLK 46
           LP D+ ++ILSRL  K LLR   +SK + SL+ S +  K  L 
Sbjct: 5  DLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 35.9 bits (84), Expect = 8e-04
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 1  MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEF 40
          ++ LP +I + I S L  + LLR   + + +  L +    
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSL 40

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.89
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.2
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	99.09
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.03
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.99
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.62
PHA02713	557	hypothetical protein; Provisional	97.59
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.43
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	97.41
PHA02713	557	hypothetical protein; Provisional	97.39
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.22
PHA03098	534	kelch-like protein; Provisional	97.18
PHA02790	480	Kelch-like protein; Provisional	97.13
PHA02790	480	Kelch-like protein; Provisional	97.07
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	97.06
PLN02153	341	epithiospecifier protein	97.05
KOG2997	366	consensus F-box protein FBX9 [General function pre	97.05
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	96.98
PHA03098	534	kelch-like protein; Provisional	96.96
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	96.79
PLN02193	470	nitrile-specifier protein	96.71
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	96.71
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	96.71
PLN02153	341	epithiospecifier protein	96.53
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	96.19
PF13964	50	Kelch_6: Kelch motif	95.83
PLN02193	470	nitrile-specifier protein	95.81
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	95.55
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	95.41
PF13964	50	Kelch_6: Kelch motif	94.91
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	94.43
smart00612	47	Kelch Kelch domain.	93.77
KOG4693	392	consensus Uncharacterized conserved protein, conta	93.0
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	92.48
KOG4341	483	consensus F-box protein containing LRR [General fu	92.33
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	91.88
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	90.09
KOG4693	392	consensus Uncharacterized conserved protein, conta	89.86
smart00612	47	Kelch Kelch domain.	89.15
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	87.67
PF13415	49	Kelch_3: Galactose oxidase, central domain	86.53
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	85.98
PF13415	49	Kelch_3: Galactose oxidase, central domain	85.02
KOG1230	521	consensus Protein containing repeated kelch motifs	82.8
PF13013	109	F-box-like_2: F-box-like domain	81.34

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.89  E-value=7.7e-23  Score=156.33  Aligned_cols=108  Identities=30%  Similarity=0.475  Sum_probs=82.3

Q ss_pred             EecccceEEeecCCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEEC
Q 037535          105 IDSCNGLIALKNDENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSL  184 (216)
Q Consensus       105 ~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss  184 (216)
                      ++|||||||+... ..++||||+||+++.||+++........ ..++||||+.+++||||++.... .......++||++
T Consensus         1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~-~~~~~G~d~~~~~YKVv~~~~~~-~~~~~~~~~Vys~   77 (230)
T TIGR01640         1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKES-DTYFLGYDPIEKQYKVLCFSDRS-GNRNQSEHQVYTL   77 (230)
T ss_pred             CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCccccccc-ceEEEeecccCCcEEEEEEEeec-CCCCCccEEEEEe
Confidence            4799999999865 7899999999999999976543211111 26799999999999999997632 1234578999999


Q ss_pred             CCCcEEEecCCCCcceecCCCceEECCeeecC
Q 037535          185 RTNSWRRIRVDFPYYILHGWDGKFVDGHVHWL  216 (216)
Q Consensus       185 ~t~~W~~~~~~~p~~~~~~~~~v~~~G~lywl  216 (216)
                      ++++||.+....+... ....+|++||++||+
T Consensus        78 ~~~~Wr~~~~~~~~~~-~~~~~v~~~G~lyw~  108 (230)
T TIGR01640        78 GSNSWRTIECSPPHHP-LKSRGVCINGVLYYL  108 (230)
T ss_pred             CCCCccccccCCCCcc-ccCCeEEECCEEEEE
Confidence            9999999883333222 222599999999996

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.20  E-value=1.4e-11  Score=69.98  Aligned_cols=40  Identities=25%  Similarity=0.521  Sum_probs=35.5

Q ss_pred             CCCCCHHHHHHHHhcCCccchhhhccccHhhhhhhcChhH
Q 037535            1 MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEF   40 (216)
Q Consensus         1 ~~~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~F   40 (216)
                      |..||+|++.+||..|+++++.++.+|||+|+.++.++.+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l   40 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL   40 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence            6799999999999999999999999999999999988754

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=99.09  E-value=3.7e-11  Score=68.57  Aligned_cols=43  Identities=40%  Similarity=0.498  Sum_probs=36.4

Q ss_pred             CCCCHHHHHHHHhcCCccchhhhccccHhhhhhhcChhHHHHH
Q 037535            2 ASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIH   44 (216)
Q Consensus         2 ~~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~F~~~~   44 (216)
                      .+||+|++.+||.+|+++++.+++.|||+|++++.+..+...+
T Consensus         4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            4799999999999999999999999999999999998876543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.03  E-value=3.3e-09  Score=85.18  Aligned_cols=36  Identities=28%  Similarity=0.433  Sum_probs=32.2

Q ss_pred             CCCCHHHHHHHHhcCC-ccchhhhccccHhhhhhhcC
Q 037535            2 ASLPTDIKIDILSRLP-VKSLLRFKCMSKSFCSLIAS   37 (216)
Q Consensus         2 ~~LP~Dll~eIl~rLp-~~sl~r~r~VcK~W~~~i~s   37 (216)
                      ++||+||+..|..||| ..++.|||+||++||+.+..
T Consensus         5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            4799999999999997 44899999999999998763

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.99  E-value=2.7e-10  Score=62.65  Aligned_cols=39  Identities=46%  Similarity=0.708  Sum_probs=36.3

Q ss_pred             CCHHHHHHHHhcCCccchhhhccccHhhhhhhcChhHHH
Q 037535            4 LPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIK   42 (216)
Q Consensus         4 LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~F~~   42 (216)
                      ||+|++.+||.+|+++++.++++|||+|+.++.++.|-+
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999999887643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=2.5e-05  Score=60.78  Aligned_cols=38  Identities=34%  Similarity=0.494  Sum_probs=34.7

Q ss_pred             CCCCHHHHHHHHhcCCccchhhhccccHhhhhhhcChh
Q 037535            2 ASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQE   39 (216)
Q Consensus         2 ~~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~   39 (216)
                      .+||||+++.||+.|+.|+|.+...|||+|+.+-.+..
T Consensus        99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~  136 (419)
T KOG2120|consen   99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES  136 (419)
T ss_pred             ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence            47999999999999999999999999999999876544

>PHA02713 hypothetical protein; Provisional

Probab=97.59  E-value=0.0014  Score=56.65  Aligned_cols=84  Identities=15%  Similarity=0.186  Sum_probs=55.9

Q ss_pred             CcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEECCC-CcEEEecCCCC
Q 037535          119 NGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRT-NSWRRIRVDFP  197 (216)
Q Consensus       119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss~t-~~W~~~~~~~p  197 (216)
                      ..+.++||.|++|..+|+++..+...   ..+.++       -||..+++..+.......++.|+.++ ++|+.+. .+|
T Consensus       432 ~~ve~YDP~td~W~~v~~m~~~r~~~---~~~~~~-------~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~-~m~  500 (557)
T PHA02713        432 NKVIRYDTVNNIWETLPNFWTGTIRP---GVVSHK-------DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT-TTE  500 (557)
T ss_pred             ceEEEECCCCCeEeecCCCCcccccC---cEEEEC-------CEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc-ccC
Confidence            45889999999999999887654331   122221       17777765322122234679999999 8999988 776


Q ss_pred             cceecCCCceEECCeee
Q 037535          198 YYILHGWDGKFVDGHVH  214 (216)
Q Consensus       198 ~~~~~~~~~v~~~G~ly  214 (216)
                      ..... ...+.++|.+|
T Consensus       501 ~~r~~-~~~~~~~~~iy  516 (557)
T PHA02713        501 SRLSA-LHTILHDNTIM  516 (557)
T ss_pred             ccccc-ceeEEECCEEE
Confidence            54332 25677888887

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.43  E-value=0.0013  Score=56.88  Aligned_cols=98  Identities=13%  Similarity=0.121  Sum_probs=65.2

Q ss_pred             EEecccceEEeec-------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCc
Q 037535          104 IIDSCNGLIALKN-------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEY  176 (216)
Q Consensus       104 ~~~s~~Gll~~~~-------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~  176 (216)
                      -++..+|.|++.+       .-..+-.+||.|++|..+|++...+....   .+.+       .-+|.++++..+ ....
T Consensus       422 gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g---~a~~-------~~~iYvvGG~~~-~~~~  490 (571)
T KOG4441|consen  422 GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG---VAVL-------NGKIYVVGGFDG-TSAL  490 (571)
T ss_pred             EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce---EEEE-------CCEEEEECCccC-CCcc
Confidence            4556688887653       22578999999999999999988654421   1111       237888876543 4455


Q ss_pred             cEEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          177 TEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       177 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      ..+|.|+..+++|+.+. .++...... ..+.++|.+|
T Consensus       491 ~~VE~ydp~~~~W~~v~-~m~~~rs~~-g~~~~~~~ly  526 (571)
T KOG4441|consen  491 SSVERYDPETNQWTMVA-PMTSPRSAV-GVVVLGGKLY  526 (571)
T ss_pred             ceEEEEcCCCCceeEcc-cCccccccc-cEEEECCEEE
Confidence            66999999999999997 443322211 3456666665

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=97.41  E-value=0.0056  Score=49.20  Aligned_cols=107  Identities=9%  Similarity=0.139  Sum_probs=59.6

Q ss_pred             EEecccceEEeec-C----CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCC-----
Q 037535          104 IIDSCNGLIALKN-D----ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVREN-----  173 (216)
Q Consensus       104 ~~~s~~Gll~~~~-~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~-----  173 (216)
                      .+...+|.|.+.. .    ..++.++||.|++|..++++.............++...    +=+++.++......     
T Consensus       166 ~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~----~~~iyv~GG~~~~~~~~~~  241 (323)
T TIGR03548       166 VCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKIN----ESLLLCIGGFNKDVYNDAV  241 (323)
T ss_pred             eEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEEC----CCEEEEECCcCHHHHHHHH
Confidence            4445667775543 1    23568999999999999875321111000011111111    11555554321100     


Q ss_pred             --------------------------CCccEEEEEECCCCcEEEecCCCCcceecCCCceEECCeeec
Q 037535          174 --------------------------VEYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHW  215 (216)
Q Consensus       174 --------------------------~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lyw  215 (216)
                                                .....+++|+..+++|..++ .+|.........+.++|.||-
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~~r~~~~~~~~~~~iyv  308 (323)
T TIGR03548       242 IDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG-NSPFFARCGAALLLTGNNIFS  308 (323)
T ss_pred             hhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc-cccccccCchheEEECCEEEE
Confidence                                      01256999999999999988 555322222257888898884

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PHA02713 hypothetical protein; Provisional

Probab=97.39  E-value=0.0031  Score=54.58  Aligned_cols=98  Identities=14%  Similarity=0.133  Sum_probs=63.0

Q ss_pred             EEecccceEEeecC-------CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCc
Q 037535          104 IIDSCNGLIALKND-------ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEY  176 (216)
Q Consensus       104 ~~~s~~Gll~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~  176 (216)
                      .++..+|.|.+.+.       ...+..+||.+++|..+|+++..+...   ....  .+   +  ||.++++.. .....
T Consensus       298 ~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~---~~~~--~~---g--~IYviGG~~-~~~~~  366 (557)
T PHA02713        298 ASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF---SLAV--ID---D--TIYAIGGQN-GTNVE  366 (557)
T ss_pred             EEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce---eEEE--EC---C--EEEEECCcC-CCCCC
Confidence            34445666644421       246889999999999999987654321   1122  22   1  788877632 22334


Q ss_pred             cEEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          177 TEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       177 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      ..+++|+..+++|+.++ .+|...... ..+.++|.+|
T Consensus       367 ~sve~Ydp~~~~W~~~~-~mp~~r~~~-~~~~~~g~IY  402 (557)
T PHA02713        367 RTIECYTMGDDKWKMLP-DMPIALSSY-GMCVLDQYIY  402 (557)
T ss_pred             ceEEEEECCCCeEEECC-CCCcccccc-cEEEECCEEE
Confidence            67999999999999988 665433222 4567788877

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.22  E-value=0.0015  Score=56.54  Aligned_cols=98  Identities=16%  Similarity=0.200  Sum_probs=66.4

Q ss_pred             EEecccceEEeec-------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCc
Q 037535          104 IIDSCNGLIALKN-------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEY  176 (216)
Q Consensus       104 ~~~s~~Gll~~~~-------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~  176 (216)
                      .++..+|.|.+.+       ..+.+..+||-+++|..+|++...+...        +....  ..+|.++++.. .....
T Consensus       327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~--------~v~~l--~g~iYavGG~d-g~~~l  395 (571)
T KOG4441|consen  327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF--------GVAVL--DGKLYAVGGFD-GEKSL  395 (571)
T ss_pred             cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc--------eeEEE--CCEEEEEeccc-ccccc
Confidence            4555666665542       2357999999999999999998765432        21111  23777777642 34566


Q ss_pred             cEEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          177 TEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       177 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      ..+|.|+..+++|..+. .++... ....++.++|.+|
T Consensus       396 ~svE~YDp~~~~W~~va-~m~~~r-~~~gv~~~~g~iY  431 (571)
T KOG4441|consen  396 NSVECYDPVTNKWTPVA-PMLTRR-SGHGVAVLGGKLY  431 (571)
T ss_pred             ccEEEecCCCCcccccC-CCCcce-eeeEEEEECCEEE
Confidence            78999999999999998 554422 2225677888887

>PHA03098 kelch-like protein; Provisional

Probab=97.18  E-value=0.0063  Score=52.43  Aligned_cols=99  Identities=16%  Similarity=0.198  Sum_probs=61.4

Q ss_pred             EEecccceEEeec------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCcc
Q 037535          104 IIDSCNGLIALKN------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYT  177 (216)
Q Consensus       104 ~~~s~~Gll~~~~------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~  177 (216)
                      .++..+|.|.+.+      ....+.++||.|++|..+|+++..+...   ...  ..+   +  ++..+++.........
T Consensus       337 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~---~~~--~~~---~--~iYv~GG~~~~~~~~~  406 (534)
T PHA03098        337 GVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP---CVV--NVN---N--LIYVIGGISKNDELLK  406 (534)
T ss_pred             eEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc---eEE--EEC---C--EEEEECCcCCCCcccc
Confidence            3445566665442      1346889999999999998877654321   111  121   2  6777665322223356


Q ss_pred             EEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          178 EVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       178 ~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      .+++|+..+++|+... .+|..... ...+..+|.+|
T Consensus       407 ~v~~yd~~t~~W~~~~-~~p~~r~~-~~~~~~~~~iy  441 (534)
T PHA03098        407 TVECFSLNTNKWSKGS-PLPISHYG-GCAIYHDGKIY  441 (534)
T ss_pred             eEEEEeCCCCeeeecC-CCCccccC-ceEEEECCEEE
Confidence            7899999999999887 55543322 24556666665

>PHA02790 Kelch-like protein; Provisional

Probab=97.13  E-value=0.0083  Score=51.03  Aligned_cols=91  Identities=16%  Similarity=0.209  Sum_probs=60.3

Q ss_pred             eEEecccceEEeec----CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccE
Q 037535          103 PIIDSCNGLIALKN----DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTE  178 (216)
Q Consensus       103 ~~~~s~~Gll~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~  178 (216)
                      ..++.++|.|.+.+    ....+..+||.|++|..+|+++..+...   ....+  +   +  ||..+++         .
T Consensus       356 ~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~---~~~~~--~---~--~IYv~GG---------~  416 (480)
T PHA02790        356 PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS---CALVF--G---R--RLFLVGR---------N  416 (480)
T ss_pred             cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc---eEEEE--C---C--EEEEECC---------c
Confidence            35567788886653    1245678899999999999887654331   12222  2   1  7777642         3


Q ss_pred             EEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          179 VSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       179 ~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      +++|+.++++|+.++ .++..... ...+.++|.+|
T Consensus       417 ~e~ydp~~~~W~~~~-~m~~~r~~-~~~~v~~~~IY  450 (480)
T PHA02790        417 AEFYCESSNTWTLID-DPIYPRDN-PELIIVDNKLL  450 (480)
T ss_pred             eEEecCCCCcEeEcC-CCCCCccc-cEEEEECCEEE
Confidence            689999999999988 66542222 24677788877

>PHA02790 Kelch-like protein; Provisional

Probab=97.07  E-value=0.012  Score=50.05  Aligned_cols=96  Identities=6%  Similarity=-0.020  Sum_probs=62.0

Q ss_pred             EEecccceEEeec---CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEE
Q 037535          104 IIDSCNGLIALKN---DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVS  180 (216)
Q Consensus       104 ~~~s~~Gll~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~  180 (216)
                      ..+..+|.|.+.+   ....+-.+||.+++|..+|+++..+..     ..+..++.     ||..+++..   .....++
T Consensus       313 ~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-----~~~~~~~g-----~IYviGG~~---~~~~~ve  379 (480)
T PHA02790        313 SGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-----PAVASINN-----VIYVIGGHS---ETDTTTE  379 (480)
T ss_pred             eEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-----cEEEEECC-----EEEEecCcC---CCCccEE
Confidence            3445677775543   234678899999999999998765432     11222221     777776532   1235689


Q ss_pred             EEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          181 VYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       181 vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      +|+.++++|+.++ .++..... ...+.++|.+|
T Consensus       380 ~ydp~~~~W~~~~-~m~~~r~~-~~~~~~~~~IY  411 (480)
T PHA02790        380 YLLPNHDQWQFGP-STYYPHYK-SCALVFGRRLF  411 (480)
T ss_pred             EEeCCCCEEEeCC-CCCCcccc-ceEEEECCEEE
Confidence            9999999999987 55533322 14567788877

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=97.06  E-value=0.00037  Score=55.06  Aligned_cols=41  Identities=27%  Similarity=0.341  Sum_probs=36.9

Q ss_pred             CCCC----HHHHHHHHhcCCccchhhhccccHhhhhhhcChhHHH
Q 037535            2 ASLP----TDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIK   42 (216)
Q Consensus         2 ~~LP----~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~F~~   42 (216)
                      ..||    +++.+.||+.|...+|+.+..|||+|+.+++++..-+
T Consensus        76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK  120 (499)
T KOG0281|consen   76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK  120 (499)
T ss_pred             HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence            4589    9999999999999999999999999999999876533

>PLN02153 epithiospecifier protein

Probab=97.05  E-value=0.035  Score=45.03  Aligned_cols=85  Identities=7%  Similarity=0.104  Sum_probs=48.2

Q ss_pred             EEecccceEEeec------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCC----
Q 037535          104 IIDSCNGLIALKN------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVREN----  173 (216)
Q Consensus       104 ~~~s~~Gll~~~~------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~----  173 (216)
                      .++..+|.|.+..      ...++.++||.|++|..++++.............+..++   +  |++.+++.....    
T Consensus        80 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~---~--~iyv~GG~~~~~~~~~  154 (341)
T PLN02153         80 RMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDE---N--HVYVFGGVSKGGLMKT  154 (341)
T ss_pred             EEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEEC---C--EEEEECCccCCCccCC
Confidence            3445566665442      124789999999999999765211100000011111111   1  666665532111    


Q ss_pred             -CCccEEEEEECCCCcEEEec
Q 037535          174 -VEYTEVSVYSLRTNSWRRIR  193 (216)
Q Consensus       174 -~~~~~~~vyss~t~~W~~~~  193 (216)
                       .....+++|+..+++|+.++
T Consensus       155 ~~~~~~v~~yd~~~~~W~~l~  175 (341)
T PLN02153        155 PERFRTIEAYNIADGKWVQLP  175 (341)
T ss_pred             CcccceEEEEECCCCeEeeCC
Confidence             12346899999999999887

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=97.05  E-value=0.0003  Score=54.99  Aligned_cols=43  Identities=16%  Similarity=0.407  Sum_probs=37.7

Q ss_pred             CCCCCHHHHHHHHhcCC-----ccchhhhccccHhhhhhhcChhHHHH
Q 037535            1 MASLPTDIKIDILSRLP-----VKSLLRFKCMSKSFCSLIASQEFIKI   43 (216)
Q Consensus         1 ~~~LP~Dll~eIl~rLp-----~~sl~r~r~VcK~W~~~i~s~~F~~~   43 (216)
                      |..||+|++.+||.+.=     ..++.++.+|||.|+-...+|+|-+.
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~  154 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL  154 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence            46799999999998864     48999999999999999999998654

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=96.98  E-value=0.021  Score=46.32  Aligned_cols=37  Identities=22%  Similarity=0.328  Sum_probs=25.7

Q ss_pred             cEEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          177 TEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       177 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      ..+++|+..+++|+.++ .+|.........+.++|.||
T Consensus       168 ~~v~~YDp~t~~W~~~~-~~p~~~r~~~~~~~~~~~iy  204 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLG-ENPFLGTAGSAIVHKGNKLL  204 (346)
T ss_pred             ceEEEEECCCCceeECc-cCCCCcCCCceEEEECCEEE
Confidence            57999999999999988 65532211123456777777

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PHA03098 kelch-like protein; Provisional

Probab=96.96  E-value=0.023  Score=48.95  Aligned_cols=100  Identities=12%  Similarity=0.066  Sum_probs=60.3

Q ss_pred             EEecccceEEeecC-------CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCC--C
Q 037535          104 IIDSCNGLIALKND-------ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVREN--V  174 (216)
Q Consensus       104 ~~~s~~Gll~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~--~  174 (216)
                      .++..+|.+.+.+.       ...+.++||.|++|..+++++..+...     ....++   +  ++..+++.....  .
T Consensus       384 ~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-----~~~~~~---~--~iyv~GG~~~~~~~~  453 (534)
T PHA03098        384 CVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-----CAIYHD---G--KIYVIGGISYIDNIK  453 (534)
T ss_pred             eEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-----eEEEEC---C--EEEEECCccCCCCCc
Confidence            34556777765431       256899999999999998776544321     112222   1  566665432111  1


Q ss_pred             CccEEEEEECCCCcEEEecCCCCcceecCCCceEECCeeec
Q 037535          175 EYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHW  215 (216)
Q Consensus       175 ~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lyw  215 (216)
                      ....+++|+..+++|+.++ .++..... ...+.++|.+|-
T Consensus       454 ~~~~v~~yd~~~~~W~~~~-~~~~~r~~-~~~~~~~~~iyv  492 (534)
T PHA03098        454 VYNIVESYNPVTNKWTELS-SLNFPRIN-ASLCIFNNKIYV  492 (534)
T ss_pred             ccceEEEecCCCCceeeCC-CCCccccc-ceEEEECCEEEE
Confidence            2345899999999999988 55432211 134556777763

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=96.79  E-value=0.057  Score=44.47  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=26.8

Q ss_pred             cEEEEEECCCCcEEEecCCCCcceecCCCceEECCeeec
Q 037535          177 TEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVHW  215 (216)
Q Consensus       177 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~lyw  215 (216)
                      ..+++|+..++.|+.+. .+|.........+.++|.||-
T Consensus       189 ~~v~~YD~~t~~W~~~~-~~p~~~~~~~a~v~~~~~iYv  226 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAG-ESPFLGTAGSAVVIKGNKLWL  226 (376)
T ss_pred             ceEEEEECCCCeeeECC-cCCCCCCCcceEEEECCEEEE
Confidence            57899999999999988 565422222245667888874

>PLN02193 nitrile-specifier protein

Probab=96.71  E-value=0.082  Score=44.92  Aligned_cols=101  Identities=12%  Similarity=0.067  Sum_probs=55.3

Q ss_pred             EEecccceEEeec------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCcc
Q 037535          104 IIDSCNGLIALKN------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYT  177 (216)
Q Consensus       104 ~~~s~~Gll~~~~------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~  177 (216)
                      .+...++.|.+..      ....+.++||.|++|..++++..............  ++   +  |+..+....  .....
T Consensus       273 ~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~--~~---g--kiyviGG~~--g~~~~  343 (470)
T PLN02193        273 SMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV--VQ---G--KVWVVYGFN--GCEVD  343 (470)
T ss_pred             EEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE--EC---C--cEEEEECCC--CCccC
Confidence            3444566665442      23468899999999999876432111111111111  12   1  455554321  12346


Q ss_pred             EEEEEECCCCcEEEecCC--CCcceecCCCceEECCeee
Q 037535          178 EVSVYSLRTNSWRRIRVD--FPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       178 ~~~vyss~t~~W~~~~~~--~p~~~~~~~~~v~~~G~ly  214 (216)
                      .+++|+..+++|+.+...  .|.... ...++.+++.+|
T Consensus       344 dv~~yD~~t~~W~~~~~~g~~P~~R~-~~~~~~~~~~iy  381 (470)
T PLN02193        344 DVHYYDPVQDKWTQVETFGVRPSERS-VFASAAVGKHIV  381 (470)
T ss_pred             ceEEEECCCCEEEEeccCCCCCCCcc-eeEEEEECCEEE
Confidence            799999999999988621  122111 114566676666

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=96.71  E-value=0.1  Score=42.33  Aligned_cols=87  Identities=14%  Similarity=0.085  Sum_probs=50.0

Q ss_pred             CcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEEC--CCCcEEEecCCC
Q 037535          119 NGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSL--RTNSWRRIRVDF  196 (216)
Q Consensus       119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss--~t~~W~~~~~~~  196 (216)
                      ..+.++||.|++|..+++++......    .....++     =||+.+.+..........+++|+.  +++.|..+. .+
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~----~~~~~~~-----~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~-~m  237 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAG----SAIVHKG-----NKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP-PL  237 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCC----ceEEEEC-----CEEEEEeeeeCCCccchheEEEEecCCCceeeecC-CC
Confidence            56899999999999998876422111    1111222     177777664322222234555654  677999888 55


Q ss_pred             Cccee----c--CCCceEECCeeec
Q 037535          197 PYYIL----H--GWDGKFVDGHVHW  215 (216)
Q Consensus       197 p~~~~----~--~~~~v~~~G~lyw  215 (216)
                      |....    .  ....+.++|.||-
T Consensus       238 ~~~r~~~~~~~~~~~a~~~~~~Iyv  262 (346)
T TIGR03547       238 PPPKSSSQEGLAGAFAGISNGVLLV  262 (346)
T ss_pred             CCCCCCccccccEEeeeEECCEEEE
Confidence            43211    0  0124567887773

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=96.71  E-value=0.062  Score=43.19  Aligned_cols=84  Identities=8%  Similarity=-0.046  Sum_probs=51.8

Q ss_pred             CcEEEEcCCCcce----eecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEECCCCcEEEecC
Q 037535          119 NGIAFWNPSTKEH----LILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNSWRRIRV  194 (216)
Q Consensus       119 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~  194 (216)
                      ..+..+|+.+++|    ..+|+++..+...   ...  .++.     ||..+.+.. .......+++|+..+++|..++ 
T Consensus        88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~---~~~--~~~~-----~iYv~GG~~-~~~~~~~v~~yd~~~~~W~~~~-  155 (323)
T TIGR03548        88 SSVYRITLDESKEELICETIGNLPFTFENG---SAC--YKDG-----TLYVGGGNR-NGKPSNKSYLFNLETQEWFELP-  155 (323)
T ss_pred             eeEEEEEEcCCceeeeeeEcCCCCcCccCc---eEE--EECC-----EEEEEeCcC-CCccCceEEEEcCCCCCeeECC-
Confidence            5788999999987    6777776544321   111  1221     677766532 2233567899999999999987 


Q ss_pred             CCCcceecCCCceEECCeee
Q 037535          195 DFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       195 ~~p~~~~~~~~~v~~~G~ly  214 (216)
                      .+|.........+.++|.||
T Consensus       156 ~~p~~~r~~~~~~~~~~~iY  175 (323)
T TIGR03548       156 DFPGEPRVQPVCVKLQNELY  175 (323)
T ss_pred             CCCCCCCCcceEEEECCEEE
Confidence            55432211113456777776

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=96.53  E-value=0.11  Score=42.19  Aligned_cols=87  Identities=13%  Similarity=0.143  Sum_probs=47.1

Q ss_pred             cEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEee-------CCCCccEEEEEECCCCcEEEe
Q 037535          120 GIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVR-------ENVEYTEVSVYSLRTNSWRRI  192 (216)
Q Consensus       120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~-------~~~~~~~~~vyss~t~~W~~~  192 (216)
                      .+.++||.|++|..+|.+..............  ++   +  |+..+.....       .......+++|+.++++|+.+
T Consensus       160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~--~~---~--~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~  232 (341)
T PLN02153        160 TIEAYNIADGKWVQLPDPGENFEKRGGAGFAV--VQ---G--KIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEV  232 (341)
T ss_pred             eEEEEECCCCeEeeCCCCCCCCCCCCcceEEE--EC---C--eEEEEeccccccccCCccceecCceEEEEcCCCcEEec
Confidence            68899999999999987642211111101111  11   1  4554433210       011235689999999999988


Q ss_pred             cCC--CCcceecCCCceEECCeee
Q 037535          193 RVD--FPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       193 ~~~--~p~~~~~~~~~v~~~G~ly  214 (216)
                      ...  +|.... ....+.++|.||
T Consensus       233 ~~~g~~P~~r~-~~~~~~~~~~iy  255 (341)
T PLN02153        233 ETTGAKPSARS-VFAHAVVGKYII  255 (341)
T ss_pred             cccCCCCCCcc-eeeeEEECCEEE
Confidence            621  232111 113456666665

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=96.19  E-value=0.26  Score=40.60  Aligned_cols=86  Identities=10%  Similarity=0.028  Sum_probs=48.7

Q ss_pred             CcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEE--EEECCCCcEEEecCCC
Q 037535          119 NGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVS--VYSLRTNSWRRIRVDF  196 (216)
Q Consensus       119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~--vyss~t~~W~~~~~~~  196 (216)
                      .++.++||.|++|..+++++......    ......+     -||..+++....+.....+.  .|+.++++|..+. .+
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~~~~----~a~v~~~-----~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~  258 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLGTAG----SAVVIKG-----NKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP-DL  258 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCCCCc----ceEEEEC-----CEEEEEeeeECCCcCChhheEEEecCCCcceeecC-CC
Confidence            46899999999999998766422111    1112222     27887776432222222223  3466889999888 55


Q ss_pred             Cccee---cC---C-CceEECCeee
Q 037535          197 PYYIL---HG---W-DGKFVDGHVH  214 (216)
Q Consensus       197 p~~~~---~~---~-~~v~~~G~ly  214 (216)
                      |....   ..   . ..+.++|.+|
T Consensus       259 p~~~~~~~~~~~~~~~a~~~~~~iy  283 (376)
T PRK14131        259 PPAPGGSSQEGVAGAFAGYSNGVLL  283 (376)
T ss_pred             CCCCcCCcCCccceEeceeECCEEE
Confidence            43211   00   0 1456777776

>PF13964 Kelch_6: Kelch motif

Probab=95.83  E-value=0.019  Score=32.37  Aligned_cols=23  Identities=22%  Similarity=0.289  Sum_probs=20.1

Q ss_pred             CCcEEEEcCCCcceeecCCCCCC
Q 037535          118 ENGIAFWNPSTKEHLILPKYWGD  140 (216)
Q Consensus       118 ~~~~~V~NP~T~~~~~LP~~~~~  140 (216)
                      ..++.++||.|++|..+|+++..
T Consensus        27 ~~~v~~yd~~t~~W~~~~~mp~p   49 (50)
T PF13964_consen   27 SNDVERYDPETNTWEQLPPMPTP   49 (50)
T ss_pred             cccEEEEcCCCCcEEECCCCCCC
Confidence            46899999999999999988753

>PLN02193 nitrile-specifier protein

Probab=95.81  E-value=0.19  Score=42.80  Aligned_cols=82  Identities=11%  Similarity=0.117  Sum_probs=48.9

Q ss_pred             EEecccceEEeec------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCcc
Q 037535          104 IIDSCNGLIALKN------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYT  177 (216)
Q Consensus       104 ~~~s~~Gll~~~~------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~  177 (216)
                      .++..++.|.+..      ...+++++||.|++|..+++..........  ......+     =|++.+.... ......
T Consensus       223 ~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~--h~~~~~~-----~~iYv~GG~~-~~~~~~  294 (470)
T PLN02193        223 RMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSF--HSMAADE-----ENVYVFGGVS-ATARLK  294 (470)
T ss_pred             EEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccc--eEEEEEC-----CEEEEECCCC-CCCCcc
Confidence            3445566665442      235799999999999999775321111101  1111111     2677665431 223446


Q ss_pred             EEEEEECCCCcEEEec
Q 037535          178 EVSVYSLRTNSWRRIR  193 (216)
Q Consensus       178 ~~~vyss~t~~W~~~~  193 (216)
                      .+++|+..+++|+.+.
T Consensus       295 ~~~~yd~~t~~W~~~~  310 (470)
T PLN02193        295 TLDSYNIVDKKWFHCS  310 (470)
T ss_pred             eEEEEECCCCEEEeCC
Confidence            7899999999999876

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=95.55  E-value=0.33  Score=41.48  Aligned_cols=79  Identities=15%  Similarity=0.215  Sum_probs=50.8

Q ss_pred             cceEEeecCC------CcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEE
Q 037535          109 NGLIALKNDE------NGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVY  182 (216)
Q Consensus       109 ~Gll~~~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vy  182 (216)
                      +.|+++....      .++..+|+.|++|..+.+.....+....+.....|  .     ||+.+++..........+.+|
T Consensus       123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g--~-----~l~vfGG~~~~~~~~ndl~i~  195 (482)
T KOG0379|consen  123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG--T-----KLVVFGGIGGTGDSLNDLHIY  195 (482)
T ss_pred             CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC--C-----EEEEECCccCcccceeeeeee
Confidence            4455554432      38999999999999986654422222122233322  1     777776543333467889999


Q ss_pred             ECCCCcEEEecC
Q 037535          183 SLRTNSWRRIRV  194 (216)
Q Consensus       183 ss~t~~W~~~~~  194 (216)
                      +..+.+|..+..
T Consensus       196 d~~~~~W~~~~~  207 (482)
T KOG0379|consen  196 DLETSTWSELDT  207 (482)
T ss_pred             ccccccceeccc
Confidence            999999999873

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=95.41  E-value=0.038  Score=30.55  Aligned_cols=34  Identities=24%  Similarity=0.423  Sum_probs=28.0

Q ss_pred             EEEEEEEEeeCCCCccEEEEEECCCCcEEEecCCC
Q 037535          162 KVVRLVHFVRENVEYTEVSVYSLRTNSWRRIRVDF  196 (216)
Q Consensus       162 kvv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~  196 (216)
                      +|+.+++..........+++|+..+++|+.++ .+
T Consensus        13 ~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~m   46 (47)
T PF01344_consen   13 KIYVIGGYDGNNQPTNSVEVYDPETNTWEELP-PM   46 (47)
T ss_dssp             EEEEEEEBESTSSBEEEEEEEETTTTEEEEEE-EE
T ss_pred             EEEEEeeecccCceeeeEEEEeCCCCEEEEcC-CC
Confidence            78888776555678889999999999999987 44

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13964 Kelch_6: Kelch motif

Probab=94.91  E-value=0.042  Score=30.93  Aligned_cols=35  Identities=20%  Similarity=0.409  Sum_probs=26.7

Q ss_pred             EEEEEEEEeeCCCCccEEEEEECCCCcEEEecCCCC
Q 037535          162 KVVRLVHFVRENVEYTEVSVYSLRTNSWRRIRVDFP  197 (216)
Q Consensus       162 kvv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p  197 (216)
                      ||+.+++..........+++|+.++++|+.++ .+|
T Consensus        13 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~mp   47 (50)
T PF13964_consen   13 KIYVFGGYDNSGKYSNDVERYDPETNTWEQLP-PMP   47 (50)
T ss_pred             EEEEECCCCCCCCccccEEEEcCCCCcEEECC-CCC
Confidence            67777654332456788999999999999998 665

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=94.43  E-value=0.1  Score=29.16  Aligned_cols=35  Identities=14%  Similarity=0.400  Sum_probs=20.9

Q ss_pred             EEEEEEEEeeCCCCccEEEEEECCCCcEEEecCCCC
Q 037535          162 KVVRLVHFVRENVEYTEVSVYSLRTNSWRRIRVDFP  197 (216)
Q Consensus       162 kvv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p  197 (216)
                      +|+.+++..........+.+|+..+++|+.++ .+|
T Consensus        14 ~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~-~~P   48 (49)
T PF13418_consen   14 SIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP-SMP   48 (49)
T ss_dssp             EEEEE--EEE-TEE---EEEEETTTTEEEE---SS-
T ss_pred             eEEEECCCCCCCcccCCEEEEECCCCEEEECC-CCC
Confidence            67777776555456778899999999999986 555

>smart00612 Kelch Kelch domain

Probab=93.77  E-value=0.12  Score=28.14  Aligned_cols=23  Identities=30%  Similarity=0.628  Sum_probs=18.6

Q ss_pred             CccEEEEEECCCCcEEEecCCCCc
Q 037535          175 EYTEVSVYSLRTNSWRRIRVDFPY  198 (216)
Q Consensus       175 ~~~~~~vyss~t~~W~~~~~~~p~  198 (216)
                      ....+++|+.++++|+..+ .++.
T Consensus        13 ~~~~v~~yd~~~~~W~~~~-~~~~   35 (47)
T smart00612       13 RLKSVEVYDPETNKWTPLP-SMPT   35 (47)
T ss_pred             eeeeEEEECCCCCeEccCC-CCCC
Confidence            3567899999999999888 6654

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=93.00  E-value=0.95  Score=35.22  Aligned_cols=90  Identities=17%  Similarity=0.134  Sum_probs=55.8

Q ss_pred             CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEee-CCCCccEEEEEECCCCcEEEecCCC
Q 037535          118 ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVR-ENVEYTEVSVYSLRTNSWRRIRVDF  196 (216)
Q Consensus       118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~-~~~~~~~~~vyss~t~~W~~~~~~~  196 (216)
                      ..++.+.|-.|+.|.+-|+.......  ......|+|+.     |+..++++.. -+........|+..|..|+.+.+.-
T Consensus       215 c~~i~~ld~~T~aW~r~p~~~~~P~G--RRSHS~fvYng-----~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~G  287 (392)
T KOG4693|consen  215 CDTIMALDLATGAWTRTPENTMKPGG--RRSHSTFVYNG-----KMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRG  287 (392)
T ss_pred             cceeEEEeccccccccCCCCCcCCCc--ccccceEEEcc-----eEEEecccchhhhhhhcceeecccccchheeeeccC
Confidence            45899999999999988765432221  12355677764     5666654322 1245566778899999999887432


Q ss_pred             Ccce-ecCCCceEECCeee
Q 037535          197 PYYI-LHGWDGKFVDGHVH  214 (216)
Q Consensus       197 p~~~-~~~~~~v~~~G~ly  214 (216)
                      .... .-.+.++.++|++|
T Consensus       288 k~P~aRRRqC~~v~g~kv~  306 (392)
T KOG4693|consen  288 KYPSARRRQCSVVSGGKVY  306 (392)
T ss_pred             CCCCcccceeEEEECCEEE
Confidence            1111 11125677777776

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=92.48  E-value=0.25  Score=27.56  Aligned_cols=32  Identities=19%  Similarity=0.364  Sum_probs=25.0

Q ss_pred             EEEEEEEE--eeCCCCccEEEEEECCCCcEEEec
Q 037535          162 KVVRLVHF--VRENVEYTEVSVYSLRTNSWRRIR  193 (216)
Q Consensus       162 kvv~~~~~--~~~~~~~~~~~vyss~t~~W~~~~  193 (216)
                      |++.++..  .........+++|+.++.+|+.++
T Consensus        13 kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~   46 (49)
T PF07646_consen   13 KIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS   46 (49)
T ss_pred             EEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence            77777665  233467788999999999999887

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=92.33  E-value=0.066  Score=44.00  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=32.2

Q ss_pred             CCCHHHHHHHHhcCCccchhhhccccHhhhhhhcC
Q 037535            3 SLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIAS   37 (216)
Q Consensus         3 ~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s   37 (216)
                      .||.|++..||+-|..++++|++.+|+.|+-+.-+
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD  108 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALD  108 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence            69999999999999999999999999999976644

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=91.88  E-value=0.046  Score=47.04  Aligned_cols=42  Identities=21%  Similarity=0.420  Sum_probs=37.1

Q ss_pred             CCCCCHHHHHHHHhcCCccchhhhccccHhhhhhhcChhHHH
Q 037535            1 MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIK   42 (216)
Q Consensus         1 ~~~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~F~~   42 (216)
                      |..||.++...||..|+.+++..+++||+.|+.++.+...-.
T Consensus       108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~  149 (537)
T KOG0274|consen  108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW  149 (537)
T ss_pred             hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence            457999999999999999999999999999999998655543

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=90.09  E-value=0.16  Score=27.98  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=18.1

Q ss_pred             CCcEEEEcCCCcceeecCCCC
Q 037535          118 ENGIAFWNPSTKEHLILPKYW  138 (216)
Q Consensus       118 ~~~~~V~NP~T~~~~~LP~~~  138 (216)
                      ...+.++||.|++|..+|+++
T Consensus        27 ~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen   27 TNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             EEEEEEEETTTTEEEEEEEES
T ss_pred             eeeEEEEeCCCCEEEEcCCCC
Confidence            458999999999999998764

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=89.86  E-value=2.1  Score=33.40  Aligned_cols=84  Identities=13%  Similarity=0.080  Sum_probs=50.5

Q ss_pred             ecccceEEeecCCCcEEEEcCCCcceeecCCCCCCCC--Ccc------ceeeeEEcccCCCCCeEEEEEEEEeeCCCCcc
Q 037535          106 DSCNGLIALKNDENGIAFWNPSTKEHLILPKYWGDLK--DKV------YMVVDGFGYDAVNDDYKVVRLVHFVRENVEYT  177 (216)
Q Consensus       106 ~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~--~~~------~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~  177 (216)
                      +.|.|-..=....-++-|.|..+-+|..+|+--....  ...      .+......|+.     |+...++.-+.+....
T Consensus        31 GYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d-----~~yvWGGRND~egaCN  105 (392)
T KOG4693|consen   31 GYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQD-----KAYVWGGRNDDEGACN  105 (392)
T ss_pred             CcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcc-----eEEEEcCccCcccccc
Confidence            4455555444456789999999999999988322111  100      01111222221     5555544434456677


Q ss_pred             EEEEEECCCCcEEEecC
Q 037535          178 EVSVYSLRTNSWRRIRV  194 (216)
Q Consensus       178 ~~~vyss~t~~W~~~~~  194 (216)
                      ....|+.+++.|+..++
T Consensus       106 ~Ly~fDp~t~~W~~p~v  122 (392)
T KOG4693|consen  106 LLYEFDPETNVWKKPEV  122 (392)
T ss_pred             eeeeeccccccccccce
Confidence            88899999999987764

>smart00612 Kelch Kelch domain

Probab=89.15  E-value=1.2  Score=23.93  Aligned_cols=24  Identities=17%  Similarity=0.252  Sum_probs=19.8

Q ss_pred             CCcEEEEcCCCcceeecCCCCCCC
Q 037535          118 ENGIAFWNPSTKEHLILPKYWGDL  141 (216)
Q Consensus       118 ~~~~~V~NP~T~~~~~LP~~~~~~  141 (216)
                      ...+.++||.|++|..+|+++..+
T Consensus        14 ~~~v~~yd~~~~~W~~~~~~~~~r   37 (47)
T smart00612       14 LKSVEVYDPETNKWTPLPSMPTPR   37 (47)
T ss_pred             eeeEEEECCCCCeEccCCCCCCcc
Confidence            357889999999999999876544

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=87.67  E-value=0.52  Score=26.13  Aligned_cols=21  Identities=19%  Similarity=0.159  Sum_probs=14.1

Q ss_pred             CCcEEEEcCCCcceeecCCCC
Q 037535          118 ENGIAFWNPSTKEHLILPKYW  138 (216)
Q Consensus       118 ~~~~~V~NP~T~~~~~LP~~~  138 (216)
                      ..+++++|+.|++|.+||++|
T Consensus        28 ~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen   28 LNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             ---EEEEETTTTEEEE--SS-
T ss_pred             cCCEEEEECCCCEEEECCCCC
Confidence            358999999999999997765

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=86.53  E-value=1.3  Score=24.56  Aligned_cols=25  Identities=40%  Similarity=0.766  Sum_probs=19.7

Q ss_pred             CCCccEEEEEECCCCcEEEecCCCCc
Q 037535          173 NVEYTEVSVYSLRTNSWRRIRVDFPY  198 (216)
Q Consensus       173 ~~~~~~~~vyss~t~~W~~~~~~~p~  198 (216)
                      ......+.+|+..+++|+.+. ++|.
T Consensus        15 ~~~~nd~~~~~~~~~~W~~~~-~~P~   39 (49)
T PF13415_consen   15 GTRLNDVWVFDLDTNTWTRIG-DLPP   39 (49)
T ss_pred             CCEecCEEEEECCCCEEEECC-CCCC
Confidence            345567889999999999996 6554

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=85.98  E-value=21  Score=30.61  Aligned_cols=69  Identities=13%  Similarity=0.091  Sum_probs=41.5

Q ss_pred             CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEECCCCcEEEec
Q 037535          118 ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNSWRRIR  193 (216)
Q Consensus       118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss~t~~W~~~~  193 (216)
                      ..+++|+|+.|.+|.++............+.....      ++ |++.+.+....+.....+..++..+..|....
T Consensus       189 ~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~------~~-~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~  257 (482)
T KOG0379|consen  189 LNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVV------GN-KLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP  257 (482)
T ss_pred             eeeeeeeccccccceecccCCCCCCCCCCceEEEE------CC-eEEEEeccccCCceecceEeeecccceeeecc
Confidence            46899999999999998543332221111111111      12 44444443334456677889999999998655

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=85.02  E-value=1.5  Score=24.28  Aligned_cols=23  Identities=9%  Similarity=-0.021  Sum_probs=19.3

Q ss_pred             CcEEEEcCCCcceeecCCCCCCC
Q 037535          119 NGIAFWNPSTKEHLILPKYWGDL  141 (216)
Q Consensus       119 ~~~~V~NP~T~~~~~LP~~~~~~  141 (216)
                      .+++++|+.|++|.+++..+..+
T Consensus        19 nd~~~~~~~~~~W~~~~~~P~~R   41 (49)
T PF13415_consen   19 NDVWVFDLDTNTWTRIGDLPPPR   41 (49)
T ss_pred             cCEEEEECCCCEEEECCCCCCCc
Confidence            58999999999999997766544

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=82.80  E-value=27  Score=29.26  Aligned_cols=66  Identities=14%  Similarity=0.239  Sum_probs=39.2

Q ss_pred             CCcEEEEcCCCcceeecC--CCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCC---CCccEEEEEECCCCcEEEe
Q 037535          118 ENGIAFWNPSTKEHLILP--KYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVREN---VEYTEVSVYSLRTNSWRRI  192 (216)
Q Consensus       118 ~~~~~V~NP~T~~~~~LP--~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~---~~~~~~~vyss~t~~W~~~  192 (216)
                      ..++.+++-.|++|-.|-  ..|+.+..+.+   .+.       .-+++.+++..+..   .+...+.+|++.|-+|..+
T Consensus       153 YkD~W~fd~~trkweql~~~g~PS~RSGHRM---vaw-------K~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kl  222 (521)
T KOG1230|consen  153 YKDLWLFDLKTRKWEQLEFGGGPSPRSGHRM---VAW-------KRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKL  222 (521)
T ss_pred             hhheeeeeeccchheeeccCCCCCCCcccee---EEe-------eeeEEEEcceecCCCceEEeeeeEEEeccceeeeec
Confidence            568999999999999873  33333322211   110       01333333322211   3456788999999999888


Q ss_pred             c
Q 037535          193 R  193 (216)
Q Consensus       193 ~  193 (216)
                      .
T Consensus       223 e  223 (521)
T KOG1230|consen  223 E  223 (521)
T ss_pred             c
Confidence            7

>PF13013 F-box-like_2: F-box-like domain

Probab=81.34  E-value=0.96  Score=30.21  Aligned_cols=28  Identities=18%  Similarity=0.138  Sum_probs=23.2

Q ss_pred             CCCCHHHHHHHHhcCCccchhhhccccH
Q 037535            2 ASLPTDIKIDILSRLPVKSLLRFKCMSK   29 (216)
Q Consensus         2 ~~LP~Dll~eIl~rLp~~sl~r~r~VcK   29 (216)
                      .+||+||++.|+..-....+...-..|+
T Consensus        23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   23 LDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             hhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            4699999999999999888766666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	9e-04

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 38.4 bits (88), Expect = 9e-04
 Identities = 37/239 (15%), Positives = 71/239 (29%), Gaps = 33/239 (13%)

Query: 1   MASLPTDIKIDILSRLPVKSLLRF-KCMSKSFCSLIASQEFIKIHLKRSIETNSNLSLIL 59
           +A LP  + + +L+ LP   L++  + +   +  L+       +  ++            
Sbjct: 51  LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGS---- 106

Query: 60  SGTPAPILDSSRYWNGKIFSASLDSLNLGVELDHPFK--NCKGRTPIIDSCNGLIALKND 117
                      +++       +L     G E    +      G    ++   G   ++  
Sbjct: 107 --ADEERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELPGDNGVEFT 164

Query: 118 EN------GIAFWNPSTKEHLI-LPK--YWGDLKDKV-YMVVDGFGYDAVNDDYKVVRL- 166
           ++        + +    K  +I L    YW +L D     +V    Y    D   +  L 
Sbjct: 165 QDDSVKKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAGSLYELT 224

Query: 167 VHFVREN----VEYTEVSVYSLRTNSWRRIRVDFPYY---------ILHGWDGKFVDGH 212
           V  + EN     E+    V      SW  I   F  Y            G D  +  G 
Sbjct: 225 VRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVYWKGW 283

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.33
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	99.29
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.3
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.17
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.06
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.72
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.61
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.56
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.55
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.5
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.49
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.48
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.48
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.46
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.38
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.34
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.31
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.29
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.29
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.23
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.19
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.52
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.33
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.81
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.27

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.33  E-value=8.1e-13  Score=76.34  Aligned_cols=40  Identities=25%  Similarity=0.437  Sum_probs=37.7

Q ss_pred             CCCCCHHHHHHHHhcCCccchhhhccccHhhhhhhcChhH
Q 037535            1 MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEF   40 (216)
Q Consensus         1 ~~~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~F   40 (216)
                      +..||+|++.+||.+||++++.++++|||+|+.++.++.|
T Consensus         9 ~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~l   48 (53)
T 1fs1_A            9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   48 (53)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             HHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Confidence            4689999999999999999999999999999999998876

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=99.29  E-value=1.4e-12  Score=100.90  Aligned_cols=48  Identities=17%  Similarity=0.388  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHhcCCccchh-hhccccHhhhhhhcChhHHHHHHhhc
Q 037535            1 MASLPTDIKIDILSRLPVKSLL-RFKCMSKSFCSLIASQEFIKIHLKRS   48 (216)
Q Consensus         1 ~~~LP~Dll~eIl~rLp~~sl~-r~r~VcK~W~~~i~s~~F~~~~~~~~   48 (216)
                      |+.||+||+.+||++||+++|+ ||++|||+|+++++++.|-+.+..+.
T Consensus        51 ~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~   99 (297)
T 2e31_A           51 LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE   99 (297)
T ss_dssp             TTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence            5689999999999999999999 99999999999999999999887775

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.30  E-value=1.9e-07  Score=71.75  Aligned_cols=48  Identities=21%  Similarity=0.336  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHHhcCCccchhhhccccHhhhhhhcChhHHHHHHhhcc
Q 037535            2 ASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSI   49 (216)
Q Consensus         2 ~~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~F~~~~~~~~~   49 (216)
                      +.||+|++..||+.|++++++++.+|||+||.+..++..=+.+..+..
T Consensus         6 ~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~   53 (312)
T 3l2o_B            6 TRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL   53 (312)
T ss_dssp             HHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSG
T ss_pred             HhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccC
Confidence            479999999999999999999999999999999999987776666653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.17  E-value=4.7e-07  Score=74.30  Aligned_cols=39  Identities=21%  Similarity=0.416  Sum_probs=36.0

Q ss_pred             CCCCHHHHHHHHhcCCccchhhhccccHhhhhhhcC-hhH
Q 037535            2 ASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIAS-QEF   40 (216)
Q Consensus         2 ~~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s-~~F   40 (216)
                      +.||+|++.+||+.||+++|+++.+|||+|+.++.+ +..
T Consensus        16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~   55 (464)
T 3v7d_B           16 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL   55 (464)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHH
T ss_pred             HHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            469999999999999999999999999999999988 554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.08  E-value=2.2e-06  Score=70.08  Aligned_cols=45  Identities=20%  Similarity=0.261  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHhcCCccchhhhccccHhhhhhhcChhHHHHHH
Q 037535            1 MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHL   45 (216)
Q Consensus         1 ~~~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~F~~~~~   45 (216)
                      ++.||+|++.+||..|++++|.++.+|||+|+.++.++.+-+...
T Consensus        19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~   63 (445)
T 2ovr_B           19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC   63 (445)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred             hHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhe
Confidence            467999999999999999999999999999999999887655443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.06  E-value=1.4e-06  Score=68.69  Aligned_cols=39  Identities=26%  Similarity=0.431  Sum_probs=35.8

Q ss_pred             CCCCCHHHHHHHHhcCCccchhhhccccHhhhhhhcChh
Q 037535            1 MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQE   39 (216)
Q Consensus         1 ~~~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~   39 (216)
                      +++||+|++.+||.+|+.+++.+++.|||+|+.+..++.
T Consensus         9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~   47 (336)
T 2ast_B            9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES   47 (336)
T ss_dssp             SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCST
T ss_pred             hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCch
Confidence            468999999999999999999999999999999986654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.93  E-value=1.3e-06  Score=71.30  Aligned_cols=41  Identities=29%  Similarity=0.362  Sum_probs=36.7

Q ss_pred             CCCCHH----HHHHHHhcCCccchhhhccccHhhhhhhcChhHHH
Q 037535            2 ASLPTD----IKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIK   42 (216)
Q Consensus         2 ~~LP~D----ll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~F~~   42 (216)
                      +.||+|    |+.+||..|++++|+++.+|||+|+.++.++.+=+
T Consensus        12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~   56 (435)
T 1p22_A           12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWK   56 (435)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred             HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            458999    99999999999999999999999999998766543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.72  E-value=9.6e-06  Score=68.82  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=29.4

Q ss_pred             CCCCCHHHHHHHHhcCC-ccchhhhccccHhhhhh
Q 037535            1 MASLPTDIKIDILSRLP-VKSLLRFKCMSKSFCSL   34 (216)
Q Consensus         1 ~~~LP~Dll~eIl~rLp-~~sl~r~r~VcK~W~~~   34 (216)
                      ++.||+|++.+||.+|| .+++.+++.|||+|+.+
T Consensus         6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            46899999999999999 99999999999999987

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.61  E-value=0.001  Score=51.44  Aligned_cols=99  Identities=9%  Similarity=-0.041  Sum_probs=63.9

Q ss_pred             EEecccceEEeec-----CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccE
Q 037535          104 IIDSCNGLIALKN-----DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTE  178 (216)
Q Consensus       104 ~~~s~~Gll~~~~-----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~  178 (216)
                      .+...+|.|++..     ...++.++||.|++|..+|+++..+...   ....  ++   +  +|+.+++..........
T Consensus        50 ~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~---~~~~--~~---~--~iyv~GG~~~~~~~~~~  119 (306)
T 3ii7_A           50 ACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL---AACA--AE---G--KIYTSGGSEVGNSALYL  119 (306)
T ss_dssp             EEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC---EEEE--ET---T--EEEEECCBBTTBSCCCC
T ss_pred             EEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce---eEEE--EC---C--EEEEECCCCCCCcEeee
Confidence            3444567665543     2468999999999999998876554332   1222  22   1  67777653223345678


Q ss_pred             EEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          179 VSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       179 ~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      +++|+..+++|+.+. .+|.... ....+.++|.+|
T Consensus       120 ~~~~d~~~~~W~~~~-~~p~~r~-~~~~~~~~~~iy  153 (306)
T 3ii7_A          120 FECYDTRTESWHTKP-SMLTQRC-SHGMVEANGLIY  153 (306)
T ss_dssp             EEEEETTTTEEEEEC-CCSSCCB-SCEEEEETTEEE
T ss_pred             EEEEeCCCCceEeCC-CCcCCcc-eeEEEEECCEEE
Confidence            999999999999998 6554322 124566777776

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.56  E-value=0.0031  Score=48.85  Aligned_cols=98  Identities=10%  Similarity=0.042  Sum_probs=61.8

Q ss_pred             EEecccceEEeecC----------CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCC
Q 037535          104 IIDSCNGLIALKND----------ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVREN  173 (216)
Q Consensus       104 ~~~s~~Gll~~~~~----------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~  173 (216)
                      .+...+|.|++...          ..++.++||.|++|..+++++..+...   ....  ++   +  +|+.+++.. ..
T Consensus        65 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~---~~~~--~~---~--~iyv~GG~~-~~  133 (308)
T 1zgk_A           65 AGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI---GVGV--ID---G--HIYAVGGSH-GC  133 (308)
T ss_dssp             EEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC---EEEE--ET---T--EEEEECCEE-TT
T ss_pred             eEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc---EEEE--EC---C--EEEEEcCCC-CC
Confidence            33445666655432          257999999999999998877654332   1222  22   1  677775532 22


Q ss_pred             CCccEEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          174 VEYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       174 ~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      .....+++|+..+++|+.+. .+|..... ...+.++|.+|
T Consensus       134 ~~~~~~~~yd~~~~~W~~~~-~~p~~r~~-~~~~~~~~~iy  172 (308)
T 1zgk_A          134 IHHNSVERYEPERDEWHLVA-PMLTRRIG-VGVAVLNRLLY  172 (308)
T ss_dssp             EECCCEEEEETTTTEEEECC-CCSSCCBS-CEEEEETTEEE
T ss_pred             cccccEEEECCCCCeEeECC-CCCccccc-eEEEEECCEEE
Confidence            34567999999999999998 55533221 24556677776

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.55  E-value=0.0031  Score=48.97  Aligned_cols=98  Identities=15%  Similarity=0.116  Sum_probs=63.0

Q ss_pred             EEecccceEEeec-------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCc
Q 037535          104 IIDSCNGLIALKN-------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEY  176 (216)
Q Consensus       104 ~~~s~~Gll~~~~-------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~  176 (216)
                      .+...+|.|.+..       ....+.++||.|++|..+++++..+...   ...  .++   +  +++.+++.. .....
T Consensus       143 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~---~~~--~~~---~--~iyv~GG~~-~~~~~  211 (315)
T 4asc_A          143 TVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLF---GAT--VHD---G--RIIVAAGVT-DTGLT  211 (315)
T ss_dssp             EEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSC---EEE--EET---T--EEEEEEEEC-SSSEE
T ss_pred             eEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhce---EEE--EEC---C--EEEEEeccC-CCCcc
Confidence            3444677665543       1358999999999999998876544332   111  222   2  777777642 22345


Q ss_pred             cEEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          177 TEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       177 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      ..+++|+..+++|+.+. .+|..... ...+.++|.+|
T Consensus       212 ~~~~~yd~~~~~W~~~~-~~p~~r~~-~~~~~~~~~l~  247 (315)
T 4asc_A          212 SSAEVYSITDNKWAPFE-AFPQERSS-LSLVSLVGTLY  247 (315)
T ss_dssp             EEEEEEETTTTEEEEEC-CCSSCCBS-CEEEEETTEEE
T ss_pred             ceEEEEECCCCeEEECC-CCCCcccc-eeEEEECCEEE
Confidence            68999999999999998 55533221 14556677766

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.50  E-value=0.0031  Score=48.67  Aligned_cols=99  Identities=12%  Similarity=0.067  Sum_probs=63.0

Q ss_pred             EEecccceEEeec-------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCC--
Q 037535          104 IIDSCNGLIALKN-------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENV--  174 (216)
Q Consensus       104 ~~~s~~Gll~~~~-------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~--  174 (216)
                      .+...+|.|.+..       ....+.++||.|++|..+|+++..+...   ....  ++   +  +++.+++......  
T Consensus        96 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~---~~~~--~~---~--~iyv~GG~~~~~~~~  165 (306)
T 3ii7_A           96 AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH---GMVE--AN---G--LIYVCGGSLGNNVSG  165 (306)
T ss_dssp             EEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC---EEEE--ET---T--EEEEECCEESCTTTC
T ss_pred             eEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee---EEEE--EC---C--EEEEECCCCCCCCcc
Confidence            4445577775542       2357999999999999998877654332   1111  22   2  6777765432222  


Q ss_pred             -CccEEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          175 -EYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       175 -~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                       ....+++|+..+++|+.+. .+|.... ....+.++|.+|
T Consensus       166 ~~~~~~~~yd~~~~~W~~~~-~~p~~r~-~~~~~~~~~~i~  204 (306)
T 3ii7_A          166 RVLNSCEVYDPATETWTELC-PMIEARK-NHGLVFVKDKIF  204 (306)
T ss_dssp             EECCCEEEEETTTTEEEEEC-CCSSCCB-SCEEEEETTEEE
T ss_pred             cccceEEEeCCCCCeEEECC-Cccchhh-cceEEEECCEEE
Confidence             1678999999999999998 5554322 124556677766

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.49  E-value=0.0039  Score=48.05  Aligned_cols=97  Identities=10%  Similarity=0.127  Sum_probs=62.1

Q ss_pred             EecccceEEeec------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccE
Q 037535          105 IDSCNGLIALKN------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTE  178 (216)
Q Consensus       105 ~~s~~Gll~~~~------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~  178 (216)
                      +...+|.|++..      ...++.++||.|++|..+|+++..+...   ....  ++   +  +++.+++.. .......
T Consensus        57 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~---~~~~--~~---~--~iyv~GG~~-~~~~~~~  125 (302)
T 2xn4_A           57 MVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL---GAAV--LN---G--LLYAVGGFD-GSTGLSS  125 (302)
T ss_dssp             EEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC---EEEE--ET---T--EEEEEEEEC-SSCEEEE
T ss_pred             EEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce---EEEE--EC---C--EEEEEcCCC-CCccCce
Confidence            344566665542      2357999999999999999877654332   1222  22   1  677776642 2334567


Q ss_pred             EEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          179 VSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       179 ~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      +++|+..+++|+.+. .+|..... ...+.++|.+|
T Consensus       126 ~~~~d~~~~~W~~~~-~~p~~r~~-~~~~~~~~~iy  159 (302)
T 2xn4_A          126 VEAYNIKSNEWFHVA-PMNTRRSS-VGVGVVGGLLY  159 (302)
T ss_dssp             EEEEETTTTEEEEEC-CCSSCCBS-CEEEEETTEEE
T ss_pred             EEEEeCCCCeEeecC-CCCCcccC-ceEEEECCEEE
Confidence            999999999999998 55533221 14456677766

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.48  E-value=0.0059  Score=47.46  Aligned_cols=82  Identities=13%  Similarity=0.129  Sum_probs=55.4

Q ss_pred             EEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEee-CCCCccEEEEEECCCCcEEEecCCCCcc
Q 037535          121 IAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVR-ENVEYTEVSVYSLRTNSWRRIRVDFPYY  199 (216)
Q Consensus       121 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~-~~~~~~~~~vyss~t~~W~~~~~~~p~~  199 (216)
                      ++++||.|++|..+|+++..+...   ....+  +   +  +|+.+++... .......+++|+..+++|+.+. .+|..
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~---~~~~~--~---~--~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~  148 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLF---GLGEV--D---D--KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIK  148 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSC---EEEEE--T---T--EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSC
T ss_pred             EEEEeCCCCcEEECCCCCcccccc---ceEEE--C---C--EEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCc
Confidence            889999999999998877654332   12221  2   1  6777776432 2344567999999999999998 66644


Q ss_pred             eecCCCceEECCeee
Q 037535          200 ILHGWDGKFVDGHVH  214 (216)
Q Consensus       200 ~~~~~~~v~~~G~ly  214 (216)
                      ... ...+.++|.+|
T Consensus       149 r~~-~~~~~~~~~iy  162 (318)
T 2woz_A          149 VYG-HNVISHNGMIY  162 (318)
T ss_dssp             EES-CEEEEETTEEE
T ss_pred             ccc-cEEEEECCEEE
Confidence            322 24556777776

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.48  E-value=0.0011  Score=51.53  Aligned_cols=99  Identities=8%  Similarity=-0.005  Sum_probs=63.9

Q ss_pred             EEecccceEEeecC---------CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCC
Q 037535          104 IIDSCNGLIALKND---------ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENV  174 (216)
Q Consensus       104 ~~~s~~Gll~~~~~---------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~  174 (216)
                      .++..+|.|.+...         ...+.++||.|++|..+++++..+...   ...  .++.     |++.+++......
T Consensus        93 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~---~~~--~~~~-----~iyv~GG~~~~~~  162 (315)
T 4asc_A           93 GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH---TVL--SHMD-----LVYVIGGKGSDRK  162 (315)
T ss_dssp             EEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC---EEE--EETT-----EEEEECCBCTTSC
T ss_pred             eEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce---eEE--EECC-----EEEEEeCCCCCCc
Confidence            44455777755421         357999999999999998876654332   111  1221     6777765423345


Q ss_pred             CccEEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          175 EYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       175 ~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      ....+++|+..+++|+.+. .+|..... ...+.++|.+|
T Consensus       163 ~~~~~~~yd~~~~~W~~~~-~~p~~r~~-~~~~~~~~~iy  200 (315)
T 4asc_A          163 CLNKMCVYDPKKFEWKELA-PMQTARSL-FGATVHDGRII  200 (315)
T ss_dssp             BCCCEEEEETTTTEEEECC-CCSSCCBS-CEEEEETTEEE
T ss_pred             ccceEEEEeCCCCeEEECC-CCCCchhc-eEEEEECCEEE
Confidence            5678999999999999998 55533221 24566677776

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.46  E-value=0.0027  Score=50.16  Aligned_cols=100  Identities=13%  Similarity=0.046  Sum_probs=60.3

Q ss_pred             EEecccceEEeecC-----------CCcEEEEcCCCcceeecCCCC-CCCCCccceeeeEEcccCCCCCeEEEEEEEEee
Q 037535          104 IIDSCNGLIALKND-----------ENGIAFWNPSTKEHLILPKYW-GDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVR  171 (216)
Q Consensus       104 ~~~s~~Gll~~~~~-----------~~~~~V~NP~T~~~~~LP~~~-~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~  171 (216)
                      .++..+|.|.+...           ..++.++||.|++|..+++++ ..+..     .....++.     ||+.+++...
T Consensus        60 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~-----~~~~~~~~-----~iyv~GG~~~  129 (357)
T 2uvk_A           60 TSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAG-----HVTFVHNG-----KAYVTGGVNQ  129 (357)
T ss_dssp             EEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSS-----EEEEEETT-----EEEEEECCCH
T ss_pred             eEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCccccc-----ceEEEECC-----EEEEEeCcCC
Confidence            34445666655421           257999999999999998866 22221     11111221     6777765321


Q ss_pred             CC---------------------------------CCccEEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          172 EN---------------------------------VEYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       172 ~~---------------------------------~~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      ..                                 .....+++|+..+++|+.+. .+|.........+.++|.+|
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~~~~~~~~~~~~~~iy  204 (357)
T 2uvk_A          130 NIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG-ESPWYGTAGAAVVNKGDKTW  204 (357)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE-ECSSCCCBSCEEEEETTEEE
T ss_pred             CcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECC-CCCCCCcccccEEEECCEEE
Confidence            10                                 12368999999999999997 55533222224556677666

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.38  E-value=5e-05  Score=64.42  Aligned_cols=33  Identities=6%  Similarity=0.117  Sum_probs=31.2

Q ss_pred             CCCCHHHHHHHHhcC-CccchhhhccccHhhhhh
Q 037535            2 ASLPTDIKIDILSRL-PVKSLLRFKCMSKSFCSL   34 (216)
Q Consensus         2 ~~LP~Dll~eIl~rL-p~~sl~r~r~VcK~W~~~   34 (216)
                      ++||+|++.+||.+| |.+++.+++.|||+|+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            369999999999999 899999999999999987

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.34  E-value=0.0023  Score=49.81  Aligned_cols=99  Identities=8%  Similarity=0.098  Sum_probs=62.9

Q ss_pred             EEecccceEEeec-C-------CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCC
Q 037535          104 IIDSCNGLIALKN-D-------ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVE  175 (216)
Q Consensus       104 ~~~s~~Gll~~~~-~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~  175 (216)
                      .++..+|.|.+.. .       ...+.++||.|++|..+++++..+...   ..  ..++   +  +|+.+++.......
T Consensus       104 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~---~~--~~~~---~--~iyv~GG~~~~~~~  173 (318)
T 2woz_A          104 GLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH---NV--ISHN---G--MIYCLGGKTDDKKC  173 (318)
T ss_dssp             EEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC---EE--EEET---T--EEEEECCEESSSCB
T ss_pred             ceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc---EE--EEEC---C--EEEEEcCCCCCCCc
Confidence            4444567665542 1       246899999999999998776543321   11  1122   1  67777664333445


Q ss_pred             ccEEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          176 YTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       176 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      ...+++|+..+++|+.+. .+|..... ...+.++|.+|
T Consensus       174 ~~~~~~yd~~~~~W~~~~-~~p~~r~~-~~~~~~~~~iy  210 (318)
T 2woz_A          174 TNRVFIYNPKKGDWKDLA-PMKTPRSM-FGVAIHKGKIV  210 (318)
T ss_dssp             CCCEEEEETTTTEEEEEC-CCSSCCBS-CEEEEETTEEE
T ss_pred             cceEEEEcCCCCEEEECC-CCCCCccc-ceEEEECCEEE
Confidence            677999999999999998 55533221 14566777776

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.31  E-value=0.0053  Score=47.52  Aligned_cols=98  Identities=12%  Similarity=0.096  Sum_probs=62.2

Q ss_pred             EEecccceEEeec------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCcc
Q 037535          104 IIDSCNGLIALKN------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYT  177 (216)
Q Consensus       104 ~~~s~~Gll~~~~------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~  177 (216)
                      .+...+|.|.+..      ....+.++||.|++|..+++++..+...   ....  ++   +  +++.+++.. ......
T Consensus       116 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~---~~~~--~~---~--~iyv~GG~~-~~~~~~  184 (308)
T 1zgk_A          116 GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV---GVAV--LN---R--LLYAVGGFD-GTNRLN  184 (308)
T ss_dssp             EEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC---EEEE--ET---T--EEEEECCBC-SSCBCC
T ss_pred             EEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce---EEEE--EC---C--EEEEEeCCC-CCCcCc
Confidence            3444577776543      2457999999999999998876554332   1111  22   1  677765532 223367


Q ss_pred             EEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          178 EVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       178 ~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      .+++|+..+++|+.+. .+|..... ...+.++|.+|
T Consensus       185 ~~~~yd~~~~~W~~~~-~~p~~r~~-~~~~~~~~~iy  219 (308)
T 1zgk_A          185 SAECYYPERNEWRMIT-AMNTIRSG-AGVCVLHNCIY  219 (308)
T ss_dssp             CEEEEETTTTEEEECC-CCSSCCBS-CEEEEETTEEE
T ss_pred             eEEEEeCCCCeEeeCC-CCCCcccc-ceEEEECCEEE
Confidence            7999999999999988 55543221 14556677766

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.29  E-value=0.0058  Score=46.99  Aligned_cols=98  Identities=10%  Similarity=0.128  Sum_probs=61.8

Q ss_pred             EEecccceEEeec------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCcc
Q 037535          104 IIDSCNGLIALKN------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYT  177 (216)
Q Consensus       104 ~~~s~~Gll~~~~------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~  177 (216)
                      .+...+|.+.+..      ....+.++||.|++|..+++.+..+...   ..  ..++   +  +++.+++. .......
T Consensus       107 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~---~~--~~~~---~--~iyv~GG~-~~~~~~~  175 (301)
T 2vpj_A          107 GATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA---GL--VVAS---G--VIYCLGGY-DGLNILN  175 (301)
T ss_dssp             EEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC---EE--EEET---T--EEEEECCB-CSSCBCC
T ss_pred             eEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc---eE--EEEC---C--EEEEECCC-CCCcccc
Confidence            4444577776553      1457999999999999998776544321   11  1222   1  67766542 2223457


Q ss_pred             EEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          178 EVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       178 ~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      .+++|+..+++|+.+. .+|.... ....+.++|.+|
T Consensus       176 ~~~~~d~~~~~W~~~~-~~p~~r~-~~~~~~~~~~i~  210 (301)
T 2vpj_A          176 SVEKYDPHTGHWTNVT-PMATKRS-GAGVALLNDHIY  210 (301)
T ss_dssp             CEEEEETTTTEEEEEC-CCSSCCB-SCEEEEETTEEE
T ss_pred             eEEEEeCCCCcEEeCC-CCCcccc-cceEEEECCEEE
Confidence            7999999999999997 5554322 124556667665

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.29  E-value=0.0051  Score=47.32  Aligned_cols=98  Identities=11%  Similarity=0.011  Sum_probs=61.9

Q ss_pred             EEecccceEEeec------CCCcEEEEcCCCcc---eeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCC
Q 037535          104 IIDSCNGLIALKN------DENGIAFWNPSTKE---HLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENV  174 (216)
Q Consensus       104 ~~~s~~Gll~~~~------~~~~~~V~NP~T~~---~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~  174 (216)
                      .+...+|.|++..      ...+++++||.|++   |..+++++..+...   ....  ++   +  +++.+++.. ...
T Consensus        57 ~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~---~~~~--~~---~--~lyv~GG~~-~~~  125 (301)
T 2vpj_A           57 ASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA---GATT--LG---D--MIYVSGGFD-GSR  125 (301)
T ss_dssp             EEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC---EEEE--ET---T--EEEEECCBC-SSC
T ss_pred             cEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce---eEEE--EC---C--EEEEEcccC-CCc
Confidence            3444566665542      23579999999999   99998877654332   1122  22   1  677775432 223


Q ss_pred             CccEEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          175 EYTEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       175 ~~~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      ....+++|+..+++|+.+. .+|.... ....+.++|.+|
T Consensus       126 ~~~~~~~~d~~~~~W~~~~-~~p~~r~-~~~~~~~~~~iy  163 (301)
T 2vpj_A          126 RHTSMERYDPNIDQWSMLG-DMQTARE-GAGLVVASGVIY  163 (301)
T ss_dssp             BCCEEEEEETTTTEEEEEE-ECSSCCB-SCEEEEETTEEE
T ss_pred             ccceEEEEcCCCCeEEECC-CCCCCcc-cceEEEECCEEE
Confidence            3568999999999999987 5553221 124556677776

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.23  E-value=0.0039  Score=48.06  Aligned_cols=99  Identities=12%  Similarity=0.065  Sum_probs=62.0

Q ss_pred             EEecccceEEeec------CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCC-CCc
Q 037535          104 IIDSCNGLIALKN------DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVREN-VEY  176 (216)
Q Consensus       104 ~~~s~~Gll~~~~------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~-~~~  176 (216)
                      .+...+|.+.+..      ....+.++||.|++|..+++++..+...   ...  .++   +  +++.+++..... ...
T Consensus       103 ~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~---~~~--~~~---~--~iyv~GG~~~~~~~~~  172 (302)
T 2xn4_A          103 GAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV---GVG--VVG---G--LLYAVGGYDVASRQCL  172 (302)
T ss_dssp             EEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC---EEE--EET---T--EEEEECCEETTTTEEC
T ss_pred             EEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc---eEE--EEC---C--EEEEEeCCCCCCCccc
Confidence            3444577775542      1247899999999999998876554332   111  122   1  677776543221 235


Q ss_pred             cEEEEEECCCCcEEEecCCCCcceecCCCceEECCeee
Q 037535          177 TEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFVDGHVH  214 (216)
Q Consensus       177 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~~G~ly  214 (216)
                      ..+++|+..+++|+.+. .+|..... ...+.++|.+|
T Consensus       173 ~~~~~yd~~~~~W~~~~-~~p~~r~~-~~~~~~~~~iy  208 (302)
T 2xn4_A          173 STVECYNATTNEWTYIA-EMSTRRSG-AGVGVLNNLLY  208 (302)
T ss_dssp             CCEEEEETTTTEEEEEC-CCSSCCBS-CEEEEETTEEE
T ss_pred             cEEEEEeCCCCcEEECC-CCcccccc-ccEEEECCEEE
Confidence            67999999999999998 55543221 14556677776

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.19  E-value=0.0035  Score=49.52  Aligned_cols=99  Identities=13%  Similarity=0.107  Sum_probs=61.1

Q ss_pred             EEecccceEEeec--CCCcEEEEcCC--CcceeecCCCC-CCCCCccceeeeEEcccCCCCCeEEEEEEEEee----CCC
Q 037535          104 IIDSCNGLIALKN--DENGIAFWNPS--TKEHLILPKYW-GDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVR----ENV  174 (216)
Q Consensus       104 ~~~s~~Gll~~~~--~~~~~~V~NP~--T~~~~~LP~~~-~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~----~~~  174 (216)
                      ..+..+|.|.+..  ...+++++||.  +++|..+++++ ..+...   ....  ++   +  +|+.+++...    ...
T Consensus        14 ~~~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~---~~~~--~~---~--~lyv~GG~~~~~~~~~~   83 (357)
T 2uvk_A           14 TGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA---TSAF--ID---G--NLYVFGGIGKNSEGLTQ   83 (357)
T ss_dssp             EEEEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC---EEEE--ET---T--EEEEECCEEECTTSCEE
T ss_pred             EEEEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc---eEEE--EC---C--EEEEEcCCCCCCCccce
Confidence            3344477775543  34689999998  49999998876 333221   1222  22   1  6777765411    113


Q ss_pred             CccEEEEEECCCCcEEEecCCCC-cceecCCCceEECCeee
Q 037535          175 EYTEVSVYSLRTNSWRRIRVDFP-YYILHGWDGKFVDGHVH  214 (216)
Q Consensus       175 ~~~~~~vyss~t~~W~~~~~~~p-~~~~~~~~~v~~~G~ly  214 (216)
                      ....+++|+..+++|+.+. .++ ... .....+.++|.+|
T Consensus        84 ~~~~v~~yd~~~~~W~~~~-~~~p~~r-~~~~~~~~~~~iy  122 (357)
T 2uvk_A           84 VFNDVHKYNPKTNSWVKLM-SHAPMGM-AGHVTFVHNGKAY  122 (357)
T ss_dssp             ECCCEEEEETTTTEEEECS-CCCSSCC-SSEEEEEETTEEE
T ss_pred             eeccEEEEeCCCCcEEECC-CCCCccc-ccceEEEECCEEE
Confidence            3567899999999999998 444 211 1113466888887

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.52  E-value=0.0061  Score=53.03  Aligned_cols=97  Identities=8%  Similarity=0.048  Sum_probs=56.5

Q ss_pred             ccceEEeec-----CCCcEEEEcCCCcceeecC-CC-----CCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCc
Q 037535          108 CNGLIALKN-----DENGIAFWNPSTKEHLILP-KY-----WGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEY  176 (216)
Q Consensus       108 ~~Gll~~~~-----~~~~~~V~NP~T~~~~~LP-~~-----~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~  176 (216)
                      .+|.|++.+     ...+++++||.|++|..++ +.     +..+..   +....+..+   +  +|+.+++........
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~---hs~~~~~~~---~--~lyv~GG~~~~~~~~  467 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC---HTFTTISRN---N--QLLLIGGRKAPHQGL  467 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS---CEEEEETTT---T--EEEEECCBSSTTCBC
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc---eEEEEEccC---C--EEEEEcCCCCCCCcc
Confidence            455554442     2357999999999999998 52     222211   122222111   1  577776533222245


Q ss_pred             cEEEEEECCCCcEEEecCCCCcceecCCCceEE-CCeee
Q 037535          177 TEVSVYSLRTNSWRRIRVDFPYYILHGWDGKFV-DGHVH  214 (216)
Q Consensus       177 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~-~G~ly  214 (216)
                      ..+++|+..+++|+.+. .+|..... ...+.+ +|.+|
T Consensus       468 ~dv~~yd~~t~~W~~~~-~~p~~R~~-h~~~~~~~~~iy  504 (695)
T 2zwa_A          468 SDNWIFDMKTREWSMIK-SLSHTRFR-HSACSLPDGNVL  504 (695)
T ss_dssp             CCCEEEETTTTEEEECC-CCSBCCBS-CEEEECTTSCEE
T ss_pred             ccEEEEeCCCCcEEECC-CCCCCccc-ceEEEEcCCEEE
Confidence            67999999999999998 66542221 123343 66665

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.33  E-value=0.024  Score=48.86  Aligned_cols=80  Identities=16%  Similarity=0.184  Sum_probs=53.1

Q ss_pred             EecccceEEeec--CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEE
Q 037535          105 IDSCNGLIALKN--DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVY  182 (216)
Q Consensus       105 ~~s~~Gll~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vy  182 (216)
                      +...+|.|++..  ....+.++||.|++|..+++++..+...   ....+ -|.     ||+.+++..+.......+++|
T Consensus       249 ~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~---s~~~~-~dg-----~iyv~GG~~~~~~~~~~~e~y  319 (656)
T 1k3i_A          249 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQ---SSATM-SDG-----RVFTIGGSWSGGVFEKNGEVY  319 (656)
T ss_dssp             EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSC---EEEEC-TTS-----CEEEECCCCCSSSCCCCEEEE
T ss_pred             cCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcccccc---ceEEe-cCC-----eEEEEeCcccCCcccccceEe
Confidence            334677776653  3458999999999999998876654331   11111 021     677776532233345779999


Q ss_pred             ECCCCcEEEec
Q 037535          183 SLRTNSWRRIR  193 (216)
Q Consensus       183 ss~t~~W~~~~  193 (216)
                      +..+++|+.+.
T Consensus       320 d~~t~~W~~~~  330 (656)
T 1k3i_A          320 SPSSKTWTSLP  330 (656)
T ss_dssp             ETTTTEEEEET
T ss_pred             CCCCCcceeCC
Confidence            99999999874

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.81  E-value=0.072  Score=46.31  Aligned_cols=99  Identities=9%  Similarity=0.155  Sum_probs=57.7

Q ss_pred             ccceEEeec---CCCcEEEEcCCCcceeecCC---CCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCC-CCccEEE
Q 037535          108 CNGLIALKN---DENGIAFWNPSTKEHLILPK---YWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVREN-VEYTEVS  180 (216)
Q Consensus       108 ~~Gll~~~~---~~~~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~-~~~~~~~  180 (216)
                      ++|.|.+.+   ....+.++||.|++|..+++   .+..+..     ..+..++...  -+++.+++....+ .....++
T Consensus       499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~-----~~a~v~~~~~--~~iyv~GG~~~~~~~~~~~v~  571 (695)
T 2zwa_A          499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLV-----SAGLEFDPVS--KQGIILGGGFMDQTTVSDKAI  571 (695)
T ss_dssp             TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCB-----SCEEEEETTT--TEEEEECCBCTTSSCBCCEEE
T ss_pred             cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccc-----eeEEEEeCCC--CEEEEECCcCCCCCeeeCcEE
Confidence            377776553   11289999999999999986   3322221     2223333321  2677776532222 3457899


Q ss_pred             EEECCCCc------EEEecCCCCcceecCCCceEEC-Ceee
Q 037535          181 VYSLRTNS------WRRIRVDFPYYILHGWDGKFVD-GHVH  214 (216)
Q Consensus       181 vyss~t~~------W~~~~~~~p~~~~~~~~~v~~~-G~ly  214 (216)
                      +|+..++.      |+.+. ..|.........+.++ |.+|
T Consensus       572 ~yd~~~~~w~~~~~W~~~~-~~p~~~R~~~~~~~~~~~~iy  611 (695)
T 2zwa_A          572 IFKYDAENATEPITVIKKL-QHPLFQRYGSQIKYITPRKLL  611 (695)
T ss_dssp             EEEECTTCSSCCEEEEEEE-ECGGGCCBSCEEEEEETTEEE
T ss_pred             EEEccCCccccceEEEEcC-CCCCCCcccceEEEeCCCEEE
Confidence            99999999      88876 3321111122345555 6665

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.27  E-value=0.033  Score=47.93  Aligned_cols=81  Identities=16%  Similarity=0.048  Sum_probs=49.2

Q ss_pred             cEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEECCCCcEEEecCCCCcc
Q 037535          120 GIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNSWRRIRVDFPYY  199 (216)
Q Consensus       120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~  199 (216)
                      .+.++||.|++|..++.++..+...  .....+..|.     +|+.+++.     ....+++|+..+++|..+. .++..
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~--~~~~~~~~~g-----~lyv~GG~-----~~~~v~~yd~~t~~W~~~~-~~~~~  286 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMF--CPGISMDGNG-----QIVVTGGN-----DAKKTSLYDSSSDSWIPGP-DMQVA  286 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCS--SCEEEECTTS-----CEEEECSS-----STTCEEEEEGGGTEEEECC-CCSSC
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCc--cccccCCCCC-----CEEEeCCC-----CCCceEEecCcCCceeECC-CCCcc
Confidence            6899999999999987765433221  1112222222     56666431     1237999999999999987 65532


Q ss_pred             eecCCCceEE-CCeee
Q 037535          200 ILHGWDGKFV-DGHVH  214 (216)
Q Consensus       200 ~~~~~~~v~~-~G~ly  214 (216)
                      ... ...+.+ +|.+|
T Consensus       287 R~~-~s~~~~~dg~iy  301 (656)
T 1k3i_A          287 RGY-QSSATMSDGRVF  301 (656)
T ss_dssp             CSS-CEEEECTTSCEE
T ss_pred             ccc-cceEEecCCeEE
Confidence            211 123444 66665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	7e-06
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	3e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	0.002
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	0.002

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (93), Expect = 7e-06
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 3  SLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEF 40
          SLP ++ + I S L +  LL+   + K +  L + +  
Sbjct: 3  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 2  ASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKR 47
          + LP ++ + +LS L  K LL+     + +  L       +   K 
Sbjct: 20 SLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKE 65

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 10/72 (13%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 2  ASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFI--KIHLKRSIETNSNLSLIL 59
           SLP +I + I + L  + ++    +S+++  +I     +  K+ +  +  +    + + 
Sbjct: 7  TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLN 66

Query: 60 SGTPAPILDSSR 71
                    S+
Sbjct: 67 LKLSQKYPKLSQ 78

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 2  ASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKRSIETNSN 54
          A     I  +ILS L  KSL   + + K +  + +     K  ++R + T+S 
Sbjct: 16 ARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSL 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.96
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.89
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.56
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	97.17
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.19
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.03
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.01

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.5e-14  Score=75.83  Aligned_cols=39  Identities=26%  Similarity=0.456  Sum_probs=36.4

Q ss_pred             CCCCHHHHHHHHhcCCccchhhhccccHhhhhhhcChhH
Q 037535            2 ASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEF   40 (216)
Q Consensus         2 ~~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~F   40 (216)
                      +.||+|++.+||++||+++++|+++|||+|+.++.++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            579999999999999999999999999999999988753

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.3e-10  Score=73.70  Aligned_cols=47  Identities=21%  Similarity=0.275  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHhcCCccchhhhccccHhhhhhhcChhHHHHHHhh
Q 037535            1 MASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHLKR   47 (216)
Q Consensus         1 ~~~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~F~~~~~~~   47 (216)
                      |+.||+||+.+||+.|++++++++.+|||+|+.++.++.+=+....+
T Consensus        19 i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r   65 (102)
T d2ovrb1          19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKE   65 (102)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTT
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            56799999999999999999999999999999999998876554433

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=9.2e-11  Score=75.28  Aligned_cols=38  Identities=24%  Similarity=0.428  Sum_probs=34.9

Q ss_pred             CCCCHHHHHHHHhcCCccchhhhccccHhhhhhhc-Chh
Q 037535            2 ASLPTDIKIDILSRLPVKSLLRFKCMSKSFCSLIA-SQE   39 (216)
Q Consensus         2 ~~LP~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~-s~~   39 (216)
                      +.||+||+++||+.|++++++++++|||+|+.+++ ++.
T Consensus         7 ~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~   45 (100)
T d1nexb1           7 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTS   45 (100)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSH
T ss_pred             hhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHH
Confidence            46999999999999999999999999999999985 455

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=9.5e-09  Score=67.63  Aligned_cols=41  Identities=24%  Similarity=0.227  Sum_probs=36.2

Q ss_pred             CHHHHHHHHhcCCccchhhhccccHhhhhhhcChhHHHHHH
Q 037535            5 PTDIKIDILSRLPVKSLLRFKCMSKSFCSLIASQEFIKIHL   45 (216)
Q Consensus         5 P~Dll~eIl~rLp~~sl~r~r~VcK~W~~~i~s~~F~~~~~   45 (216)
                      ++||+..||+.|++++|+++.+|||+|+.++.++.+=+...
T Consensus        19 ~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~   59 (118)
T d1p22a1          19 LDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLI   59 (118)
T ss_dssp             CHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            36999999999999999999999999999999887755443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00077  Score=49.53  Aligned_cols=86  Identities=15%  Similarity=0.082  Sum_probs=55.3

Q ss_pred             CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeC---CCCccEEEEEECCCCcEEEecC
Q 037535          118 ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRE---NVEYTEVSVYSLRTNSWRRIRV  194 (216)
Q Consensus       118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~---~~~~~~~~vyss~t~~W~~~~~  194 (216)
                      -..+.++||.|++|..+|+++..+..+   ....+  +   +  +++.+.+....   ......+++|+..+++|+.+. 
T Consensus        18 ~~~~~~yd~~t~~W~~~~~~p~~R~~~---~~~~~--~---~--~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~-   86 (288)
T d1zgka1          18 LSYLEAYNPSNGTWLRLADLQVPRSGL---AGCVV--G---G--LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA-   86 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSC---EEEEE--T---T--EEEEECCEEEETTEEEECCCEEEEETTTTEEEECC-
T ss_pred             CceEEEEECCCCeEEECCCCCCcccee---EEEEE--C---C--EEEEEeCcccCCCCccccchhhhcccccccccccc-
Confidence            357889999999999998877654332   12222  1   1  66666543211   133567899999999999988 


Q ss_pred             CCCcceecCCCceEECCeeec
Q 037535          195 DFPYYILHGWDGKFVDGHVHW  215 (216)
Q Consensus       195 ~~p~~~~~~~~~v~~~G~lyw  215 (216)
                      .+|.... ....+..+|.+|.
T Consensus        87 ~~p~~r~-~~~~~~~~~~i~~  106 (288)
T d1zgka1          87 PMSVPRN-RIGVGVIDGHIYA  106 (288)
T ss_dssp             CCSSCCB-TCEEEEETTEEEE
T ss_pred             cccceec-ceeccccceeeEE
Confidence            5553322 2245666777774

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.19  E-value=0.063  Score=40.47  Aligned_cols=78  Identities=17%  Similarity=0.190  Sum_probs=53.5

Q ss_pred             cccceEEeec--CCCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEEC
Q 037535          107 SCNGLIALKN--DENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSL  184 (216)
Q Consensus       107 s~~Gll~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss  184 (216)
                      ..+|.+++..  ....+.++||.|++|..+|.++..+...    ......|   +  ||+.+............+++|+.
T Consensus        84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~----~~~~~~d---G--~v~v~GG~~~~~~~~~~v~~yd~  154 (387)
T d1k3ia3          84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQ----SSATMSD---G--RVFTIGGSWSGGVFEKNGEVYSP  154 (387)
T ss_dssp             CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSC----EEEECTT---S--CEEEECCCCCSSSCCCCEEEEET
T ss_pred             ecCCcEEEeecCCCcceeEecCccCccccccccccccccc----ceeeecC---C--ceeeeccccccccccceeeeecC
Confidence            3577776653  4568899999999999999887765432    2222222   2  56666543333455567999999


Q ss_pred             CCCcEEEec
Q 037535          185 RTNSWRRIR  193 (216)
Q Consensus       185 ~t~~W~~~~  193 (216)
                      .+++|+.+.
T Consensus       155 ~~~~W~~~~  163 (387)
T d1k3ia3         155 SSKTWTSLP  163 (387)
T ss_dssp             TTTEEEEET
T ss_pred             CCCceeecC
Confidence            999999886

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.03  E-value=0.0037  Score=47.73  Aligned_cols=82  Identities=15%  Similarity=0.078  Sum_probs=50.1

Q ss_pred             EEecccceEEeecC------------CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEee
Q 037535          104 IIDSCNGLIALKND------------ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVR  171 (216)
Q Consensus       104 ~~~s~~Gll~~~~~------------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~  171 (216)
                      .+...+|.|++...            .....++||.|++|..+|++........  ....+..|     =+++.+..   
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~--~~~~~~~~-----g~i~v~Gg---   94 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFC--PGISMDGN-----GQIVVTGG---   94 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSS--CEEEECTT-----SCEEEECS---
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccce--eEEEEecC-----CcEEEeec---
Confidence            44556787765420            1147799999999998876654332211  12222222     25655532   


Q ss_pred             CCCCccEEEEEECCCCcEEEecCCCCc
Q 037535          172 ENVEYTEVSVYSLRTNSWRRIRVDFPY  198 (216)
Q Consensus       172 ~~~~~~~~~vyss~t~~W~~~~~~~p~  198 (216)
                        .....+++|+..+++|+... .++.
T Consensus        95 --~~~~~~~~yd~~~~~w~~~~-~~~~  118 (387)
T d1k3ia3          95 --NDAKKTSLYDSSSDSWIPGP-DMQV  118 (387)
T ss_dssp             --SSTTCEEEEEGGGTEEEECC-CCSS
T ss_pred             --CCCcceeEecCccCcccccc-cccc
Confidence              23456899999999999888 6654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.37  Score=34.32  Aligned_cols=65  Identities=12%  Similarity=0.136  Sum_probs=45.0

Q ss_pred             CCcEEEEcCCCcceeecCCCCCCCCCccceeeeEEcccCCCCCeEEEEEEEEeeCCCCccEEEEEECCCCcEEEec
Q 037535          118 ENGIAFWNPSTKEHLILPKYWGDLKDKVYMVVDGFGYDAVNDDYKVVRLVHFVRENVEYTEVSVYSLRTNSWRRIR  193 (216)
Q Consensus       118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~vyss~t~~W~~~~  193 (216)
                      ..++.++||.|..|..+|+++..+...   ....  ++   +  |++.+... ........+++|+..++.|....
T Consensus        69 ~~~~~~yd~~~~~w~~~~~~p~~r~~~---~~~~--~~---~--~i~~~gg~-~~~~~~~~~~~~~~~~~~~~~~~  133 (288)
T d1zgka1          69 SSALDCYNPMTNQWSPCAPMSVPRNRI---GVGV--ID---G--HIYAVGGS-HGCIHHNSVERYEPERDEWHLVA  133 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBTC---EEEE--ET---T--EEEEECCE-ETTEECCCEEEEETTTTEEEECC
T ss_pred             cchhhhcccccccccccccccceecce---eccc--cc---e--eeEEecce-ecccccceeeeeccccCcccccc
Confidence            458999999999999999887655432   1111  12   1  56655432 23345567899999999999887