Citrus Sinensis ID: 037550


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80----
MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFKQFTLTDYLRRVFTKELDGKSLVNYYRLPDA
ccccccccEEEEEEEccccccEEEEEEcccccccccEEEccccccccccccccccccHHHHHHHHHHccccccccccccccccc
cccccEEEEEEEEEEccccccEEEEEEEEcccccccccccHHHHccccccccHHHccHHHHHHHHHHccccccccHcHcEcccc
MSNDEYISVEHRVLansfqeprisaavffnptnrdrlygpfpelispekptcfkqftlTDYLRRVFTKeldgkslvnyyrlpda
MSNDEYISVEHRVlansfqepriSAAVFFNPTNRDRLYGPFpelispekptcfkQFTLTDYLRRVftkeldgkslvnyyrlpda
MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFKQFTLTDYLRRVFTKELDGKSLVNYYRLPDA
*******SVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFKQFTLTDYLRRVFTKELDGKSLVNYYR****
MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFKQFTLTDYLRRVFTKELDGKSLVNYYRLP**
MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFKQFTLTDYLRRVFTKELDGKSLVNYYRLPDA
**NDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFKQFTLTDYLRRVFTKELDGKSLVNYYRL*D*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFKQFTLTDYLRRVFTKELDGKSLVNYYRLPDA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query84 2.2.26 [Sep-21-2011]
P93824360 1-aminocyclopropane-1-car yes no 0.964 0.225 0.445 5e-13
Q9LTH7366 1-aminocyclopropane-1-car no no 0.952 0.218 0.457 7e-13
Q9LTH8364 1-aminocyclopropane-1-car no no 0.952 0.219 0.457 3e-12
P93821345 1-aminocyclopropane-1-car no no 0.952 0.231 0.433 9e-12
Q8H1S4369 1-aminocyclopropane-1-car no no 0.964 0.219 0.409 3e-11
O04847401 Deacetoxyvindoline 4-hydr N/A no 0.952 0.199 0.436 1e-10
Q84MB3365 1-aminocyclopropane-1-car no no 0.952 0.219 0.421 2e-10
Q9M2C4370 1-aminocyclopropane-1-car no no 0.904 0.205 0.397 2e-10
Q94A78351 1-aminocyclopropane-1-car no no 0.928 0.222 0.4 3e-10
Q9LHN8361 Feruloyl CoA ortho-hydrox no no 0.940 0.218 0.407 1e-09
>sp|P93824|ACCH6_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 6 OS=Arabidopsis thaliana GN=At1g04350 PE=2 SV=1 Back     alignment and function desciption
 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 53/83 (63%), Gaps = 2/83 (2%)

Query: 1   MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNR--DRLYGPFPELISPEKPTCFKQFTL 58
           ++ND+ ISVEHRVLAN    PRIS A FF+ + R    +YGP  EL+S E P+ ++   L
Sbjct: 278 ITNDKVISVEHRVLANRAATPRISVASFFSTSMRPNSTVYGPIKELLSEENPSKYRVIDL 337

Query: 59  TDYLRRVFTKELDGKSLVNYYRL 81
            +Y    F K LDG S +++Y++
Sbjct: 338 KEYTEGYFKKGLDGTSYLSHYKI 360





Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: -EC: .EC: -
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function description
>sp|P93821|ACCH7_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 7 OS=Arabidopsis thaliana GN=At1g04380 PE=1 SV=1 Back     alignment and function description
>sp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1 Back     alignment and function description
>sp|O04847|DV4H_CATRO Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2 Back     alignment and function description
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function description
>sp|Q9M2C4|ACCH8_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 8 OS=Arabidopsis thaliana GN=At3g61400 PE=2 SV=1 Back     alignment and function description
>sp|Q94A78|ACCH4_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g03400 PE=2 SV=1 Back     alignment and function description
>sp|Q9LHN8|F6H1_ARATH Feruloyl CoA ortho-hydroxylase 1 OS=Arabidopsis thaliana GN=F6'H1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query84
118489548 408 unknown [Populus trichocarpa x Populus d 0.964 0.198 0.703 2e-27
224111448 371 predicted protein [Populus trichocarpa] 0.964 0.218 0.703 2e-27
118485682147 unknown [Populus trichocarpa] 0.964 0.551 0.703 4e-27
255570053 361 Desacetoxyvindoline 4-hydroxylase, putat 0.964 0.224 0.679 5e-26
225424360 393 PREDICTED: 1-aminocyclopropane-1-carboxy 0.964 0.206 0.617 5e-23
297737639149 unnamed protein product [Vitis vinifera] 0.964 0.543 0.617 1e-22
449449240 396 PREDICTED: 1-aminocyclopropane-1-carboxy 0.964 0.204 0.641 3e-22
358347260147 1-aminocyclopropane-1-carboxylate oxidas 0.952 0.544 0.575 4e-21
356502372 378 PREDICTED: 1-aminocyclopropane-1-carboxy 0.952 0.211 0.575 8e-21
358347250 365 Gibberellin 20 oxidase [Medicago truncat 0.952 0.219 0.587 8e-21
>gi|118489548|gb|ABK96576.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 66/81 (81%)

Query: 1   MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFKQFTLTD 60
           +SNDEY S EHRVLAN   EPRIS A+FFNP  RD L+GPFPELISPEKP  +++F  TD
Sbjct: 328 LSNDEYKSNEHRVLANGCHEPRISIAIFFNPLKRDSLFGPFPELISPEKPAVYREFIYTD 387

Query: 61  YLRRVFTKELDGKSLVNYYRL 81
           Y++R FTKELDGKSL NYY+L
Sbjct: 388 YIKRFFTKELDGKSLTNYYKL 408




Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111448|ref|XP_002315859.1| predicted protein [Populus trichocarpa] gi|222864899|gb|EEF02030.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118485682|gb|ABK94691.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255570053|ref|XP_002525989.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] gi|223534721|gb|EEF36413.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225424360|ref|XP_002284896.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297737639|emb|CBI26840.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449449240|ref|XP_004142373.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 6-like [Cucumis sativus] gi|449492729|ref|XP_004159083.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|358347260|ref|XP_003637677.1| 1-aminocyclopropane-1-carboxylate oxidase-like protein [Medicago truncatula] gi|355503612|gb|AES84815.1| 1-aminocyclopropane-1-carboxylate oxidase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356502372|ref|XP_003519993.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Glycine max] Back     alignment and taxonomy information
>gi|358347250|ref|XP_003637672.1| Gibberellin 20 oxidase [Medicago truncatula] gi|355503607|gb|AES84810.1| Gibberellin 20 oxidase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query84
TAIR|locus:2148303366 AT5G59540 [Arabidopsis thalian 0.952 0.218 0.457 2.9e-13
TAIR|locus:2018349360 AT1G04350 [Arabidopsis thalian 0.964 0.225 0.445 3.6e-13
TAIR|locus:2052781358 AT2G30830 [Arabidopsis thalian 0.964 0.226 0.426 4.6e-13
TAIR|locus:2148403364 AT5G59530 [Arabidopsis thalian 0.952 0.219 0.457 4.8e-13
TAIR|locus:2018274345 AT1G04380 [Arabidopsis thalian 0.952 0.231 0.445 1.1e-12
TAIR|locus:2009175369 AT1G06650 [Arabidopsis thalian 0.964 0.219 0.409 1.4e-11
TAIR|locus:2052796362 AT2G30840 [Arabidopsis thalian 0.964 0.223 0.402 1.7e-11
TAIR|locus:2824199366 AT1G06645 [Arabidopsis thalian 0.964 0.221 0.385 3.7e-11
TAIR|locus:2009130365 AT1G06620 [Arabidopsis thalian 0.952 0.219 0.421 4.7e-11
TAIR|locus:2020818351 AT1G03400 [Arabidopsis thalian 0.928 0.222 0.4 7e-11
TAIR|locus:2148303 AT5G59540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 179 (68.1 bits), Expect = 2.9e-13, P = 2.9e-13
 Identities = 38/83 (45%), Positives = 55/83 (66%)

Query:     1 MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNR--DRLYGPFPELISPEKPTCFKQFTL 58
             ++ND+++SVEHRVLAN  Q PRIS A FF+ + R   R+YGP  EL+S E P  ++  T+
Sbjct:   285 ITNDKFVSVEHRVLANR-QGPRISVASFFSSSMRPNSRVYGPMKELVSEENPPKYRDITI 343

Query:    59 TDYLRRVFTKELDGKSLVNYYRL 81
              +Y +  F K LDG S ++  R+
Sbjct:   344 KEYSKIFFEKGLDGTSHLSNIRI 366




GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA;ISS
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2018349 AT1G04350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052781 AT2G30830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148403 AT5G59530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018274 AT1G04380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009175 AT1G06650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052796 AT2G30840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2824199 AT1G06645 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009130 AT1G06620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020818 AT1G03400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query84
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 5e-13
PLN02216357 PLN02216, PLN02216, protein SRG1 2e-11
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 7e-09
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-08
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 7e-08
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-07
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-07
PLN02947374 PLN02947, PLN02947, oxidoreductase 8e-07
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 3e-06
PLN02704335 PLN02704, PLN02704, flavonol synthase 3e-06
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 4e-06
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 1e-05
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 1e-05
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 2e-05
PLN02904357 PLN02904, PLN02904, oxidoreductase 3e-05
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 4e-05
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 6e-05
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 3e-04
PLN02997325 PLN02997, PLN02997, flavonol synthase 3e-04
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 6e-04
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
 Score = 61.6 bits (150), Expect = 5e-13
 Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 1   MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFKQFTLTD 60
           +SN  Y SVEHRV+ NS +E R+S A F+NP + D    P  EL++P++P  +   T  +
Sbjct: 282 LSNAIYKSVEHRVIVNSAKE-RVSLAFFYNPKS-DLPIEPLKELVTPDRPALYPPMTFDE 339

Query: 61  YLRRVFTKELDGKSLV 76
           Y   + TK   GKS V
Sbjct: 340 YRLFIRTKGPRGKSQV 355


Length = 362

>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 84
PLN02216357 protein SRG1 99.91
PLN02904357 oxidoreductase 99.9
PLN02947374 oxidoreductase 99.9
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.9
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.89
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.89
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 99.89
PLN02393362 leucoanthocyanidin dioxygenase like protein 99.88
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.88
PLN02276361 gibberellin 20-oxidase 99.88
PLN02365300 2-oxoglutarate-dependent dioxygenase 99.87
PLN02254358 gibberellin 3-beta-dioxygenase 99.87
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 99.87
PLN02704335 flavonol synthase 99.86
PLN02156335 gibberellin 2-beta-dioxygenase 99.85
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.85
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 99.85
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.84
PLN02997325 flavonol synthase 99.84
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 99.83
PLN02485329 oxidoreductase 99.83
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.82
PTZ00273320 oxidase reductase; Provisional 99.81
PLN02403303 aminocyclopropanecarboxylate oxidase 99.77
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.73
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 99.53
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.65
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 82.32
>PLN02216 protein SRG1 Back     alignment and domain information
Probab=99.91  E-value=1e-24  Score=157.68  Aligned_cols=79  Identities=35%  Similarity=0.615  Sum_probs=75.6

Q ss_pred             CCCcceeeeeeeeecCCCCCCceeEEEEeCCCCCcccccCCCcCCCCCCCccccccchHHHHHHHhhhccCCccceeeec
Q 037550            1 MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFKQFTLTDYLRRVFTKELDGKSLVNYYR   80 (84)
Q Consensus         1 ~SNg~~~S~~HRVv~~~~~~~R~S~~~F~~p~~~d~~i~pl~~~~~~~~~~~y~~~~~~ey~~~~~~~~~~~~~~l~~~~   80 (84)
                      ||||+|||++|||++++. ++|+|++||++|+. |+.|+|+++|+++++|++|++++++||+..++.....++..|+.+|
T Consensus       279 ~TNG~~kS~~HRVv~~~~-~~R~Si~~F~~P~~-d~~i~p~~~lv~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~~~~  356 (357)
T PLN02216        279 ITNGTYRSIEHRGVVNSE-KERLSVATFHNTGM-GKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLDAMR  356 (357)
T ss_pred             hcCCeeeccCceeecCCC-CCEEEEEEEecCCC-CCeEeCcHHHcCCCCCCCCCCcCHHHHHHHHHhcccCCcchhhhhc
Confidence            899999999999999887 89999999999999 9999999999999999999999999999999999988999999888


Q ss_pred             C
Q 037550           81 L   81 (84)
Q Consensus        81 ~   81 (84)
                      |
T Consensus       357 ~  357 (357)
T PLN02216        357 I  357 (357)
T ss_pred             C
Confidence            6



>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query84
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 3e-05
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 3e-05
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 8e-05
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure

Iteration: 1

Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Query: 1 MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFKQFTLTD 60 +SN +Y S+ HR L N ++ RIS AVF P + P PE++S E P F T Sbjct: 278 LSNGKYKSILHRGLVNK-EKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQ 336 Query: 61 YLR-RVFTKE 69 ++ ++F KE Sbjct: 337 HIEHKLFGKE 346
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query84
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-23
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-23
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 4e-09
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 5e-09
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 1e-07
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 3e-05
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
 Score = 90.0 bits (224), Expect = 1e-23
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 1   MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELI---SPEKPTCFKQFT 57
           ++N +Y SV HRV+A      R+S A F+NP   D +  P P L+   + E    + +F 
Sbjct: 224 ITNGKYKSVMHRVIAQK-DGARMSLASFYNP-GSDAVIYPAPALVEKEAEENKQVYPKFV 281

Query: 58  LTDYLRRVFTKELDGKS 74
             DY++     +   K 
Sbjct: 282 FDDYMKLYAGLKFQAKE 298


>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query84
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 99.88
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 99.86
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 99.84
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 99.81
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 99.79
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 99.58
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 80.15
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
Probab=99.88  E-value=9e-24  Score=149.59  Aligned_cols=80  Identities=29%  Similarity=0.495  Sum_probs=68.8

Q ss_pred             CCCcceeeeeeeeecCCCCCCceeEEEEeCCCCCcccccCCCcCCCCC---CCccccccchHHHHHHHhhhccCCccc-e
Q 037550            1 MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPE---KPTCFKQFTLTDYLRRVFTKELDGKSL-V   76 (84)
Q Consensus         1 ~SNg~~~S~~HRVv~~~~~~~R~S~~~F~~p~~~d~~i~pl~~~~~~~---~~~~y~~~~~~ey~~~~~~~~~~~~~~-l   76 (84)
                      ||||+|||++|||++++. ++|+|++||++|+. |+.|+|++++++++   +|++|++++++||+..++...+.++.. +
T Consensus       224 ~SnG~~kS~~HRVv~~~~-~~R~Sia~F~~p~~-d~~i~pl~~l~~~~~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~  301 (319)
T 1w9y_A          224 ITNGKYKSVMHRVIAQKD-GARMSLASFYNPGS-DAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEPRF  301 (319)
T ss_dssp             HTTTSSCCCCEEECCCSS-SCCEEEEEEEECCT-TCEECCCGGGC--------CCCCCEEHHHHHHTTTTTTCSSHHHHH
T ss_pred             HhCCeeecccceecCCCC-CCceEEEEEecCCC-CCeEeCchhhcCcccccCccccCcEeHHHHHHHHHhhhcCcchhHH
Confidence            899999999999999888 89999999999999 99999999999987   599999999999999999988877765 6


Q ss_pred             eeecCC
Q 037550           77 NYYRLP   82 (84)
Q Consensus        77 ~~~~~~   82 (84)
                      +.+|+.
T Consensus       302 ~~~~~~  307 (319)
T 1w9y_A          302 EAMKAM  307 (319)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            766653



>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 84
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 4e-16
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 1e-13
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 5e-09
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 3e-07
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
 Score = 68.8 bits (167), Expect = 4e-16
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 1   MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELISPEKPTCFKQFTLTD 60
           +SN +Y S+ HR L N  ++ RIS AVF  P     +  P PE++S E P  F   T   
Sbjct: 277 LSNGKYKSILHRGLVNK-EKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQ 335

Query: 61  YLR-RVFTKELD 71
           ++  ++F KE +
Sbjct: 336 HIEHKLFGKEQE 347


>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query84
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 99.89
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 99.87
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 99.81
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 99.57
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]
Probab=99.89  E-value=1.4e-24  Score=149.97  Aligned_cols=78  Identities=29%  Similarity=0.524  Sum_probs=66.5

Q ss_pred             CCCcceeeeeeeeecCCCCCCceeEEEEeCCCCCcccccCCCcCCC---CCCCccccccchHHHHHHHhhhccCCcc-ce
Q 037550            1 MSNDEYISVEHRVLANSFQEPRISAAVFFNPTNRDRLYGPFPELIS---PEKPTCFKQFTLTDYLRRVFTKELDGKS-LV   76 (84)
Q Consensus         1 ~SNg~~~S~~HRVv~~~~~~~R~S~~~F~~p~~~d~~i~pl~~~~~---~~~~~~y~~~~~~ey~~~~~~~~~~~~~-~l   76 (84)
                      ||||+|+||.|||+.++. .+|||++||++|+. |++|+|+++|++   +++|++|+++|++||++.+.+..+.++. .|
T Consensus       223 ~Tng~~kSt~HRVv~~~~-~~R~Si~~F~~p~~-d~~i~p~~~~v~~~~~~~p~~y~~~t~~ey~~~~~~~~~~~~~~~~  300 (307)
T d1w9ya1         223 ITNGKYKSVMHRVIAQKD-GARMSLASFYNPGS-DAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEPRF  300 (307)
T ss_dssp             HTTTSSCCCCEEECCCSS-SCCEEEEEEEECCT-TCEECCCGGGC--------CCCCCEEHHHHHHTTTTTTCSSHHHHH
T ss_pred             hhCCcccCcCceeecCCC-CCcEEEEEEeeCCC-CCEEeCCHHHhcccCccCCCCCCCeeHHHHHHHHHhccCCcccHHH
Confidence            899999999999999888 89999999999999 999999999986   4678999999999999999988887654 36


Q ss_pred             eeec
Q 037550           77 NYYR   80 (84)
Q Consensus        77 ~~~~   80 (84)
                      +.+|
T Consensus       301 ~~~~  304 (307)
T d1w9ya1         301 EAMK  304 (307)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            6554



>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure