Citrus Sinensis ID: 037622
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 560 | 2.2.26 [Sep-21-2011] | |||||||
| Q84P24 | 566 | 4-coumarate--CoA ligase-l | yes | no | 0.966 | 0.955 | 0.615 | 0.0 | |
| Q6YYZ2 | 591 | 4-coumarate--CoA ligase-l | yes | no | 0.964 | 0.913 | 0.530 | 1e-145 | |
| Q336M7 | 583 | 4-coumarate--CoA ligase-l | yes | no | 0.828 | 0.795 | 0.539 | 1e-127 | |
| Q84P21 | 546 | 4-coumarate--CoA ligase-l | no | no | 0.955 | 0.979 | 0.425 | 1e-124 | |
| Q10S72 | 552 | 4-coumarate--CoA ligase-l | yes | no | 0.962 | 0.976 | 0.435 | 1e-122 | |
| Q84P25 | 565 | 4-coumarate--CoA ligase-l | no | no | 0.951 | 0.943 | 0.410 | 1e-120 | |
| P0C5B6 | 550 | 4-coumarate--CoA ligase-l | no | no | 0.95 | 0.967 | 0.400 | 1e-115 | |
| Q9M0X9 | 544 | 4-coumarate--CoA ligase-l | no | no | 0.939 | 0.966 | 0.426 | 1e-113 | |
| Q84P23 | 562 | 4-coumarate--CoA ligase-l | no | no | 0.958 | 0.955 | 0.413 | 1e-113 | |
| Q3E6Y4 | 552 | 4-coumarate--CoA ligase-l | no | no | 0.953 | 0.967 | 0.394 | 1e-111 |
| >sp|Q84P24|4CLL6_ARATH 4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana GN=4CLL6 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/549 (61%), Positives = 428/549 (77%), Gaps = 8/549 (1%)
Query: 14 NTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQL 73
N W+S +TGIY SK PS++LP D LD S +FSHKH+G TAL+DSL+G+SIS+ +L
Sbjct: 20 NPPFWFSSKTGIYTSKFPSLHLPV-DPNLDAVSALFSHKHHGDTALIDSLTGFSISHTEL 78
Query: 74 FPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIK 133
+VQS+A+G+ H G+ QGD V L+LPNS+YFP+IFL+L+ LGAIV MNP S+ EIK
Sbjct: 79 QIMVQSMAAGIYHVLGVRQGDVVSLVLPNSVYFPMIFLSLISLGAIVTTMNPSSSLGEIK 138
Query: 134 KQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSD--FHKLIAGKF 191
KQV+ C + LAFT ENV+KL S G + V++V E+ DF R + F+ ++ F
Sbjct: 139 KQVSECS--VGLAFTSTENVEKLSSLGVS-VISVSESY--DFDSIRIENPKFYSIMKESF 193
Query: 192 DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVF 251
V +P+I+Q D AAI+YSSGTTGASKG LTH N IA++ELFVRFEASQYEY S V+
Sbjct: 194 GFVPKPLIKQDDVAAIMYSSGTTGASKGVLLTHRNLIASMELFVRFEASQYEYPGSSNVY 253
Query: 252 LAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALT 311
LA LP+ HIYGLSLF +GLLSLG ++VVM+RF+AS+++ VI+++ +THFPVVPP+LMALT
Sbjct: 254 LAALPLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPMLMALT 313
Query: 312 KAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNT 371
K AKG+CG KSLKQVSSGAAP + K IEDF+ PHVD IQGYGMTESTAVGTRGFN+
Sbjct: 314 KKAKGVCGEVFKSLKQVSSGAAPLSRKFIEDFLQTLPHVDLIQGYGMTESTAVGTRGFNS 373
Query: 372 KKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID 431
+K S+Y SVGLLAPN+QAKVVDW +G FLPPG+ GELW++GPG MK Y+NN AT +I
Sbjct: 374 EKLSRYSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPGVMKGYLNNPKATQMSIV 433
Query: 432 KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAM 491
++ WL TGDIAYFDEDGYL+IVDR+KE+IKY G+QI+PADLE VL+ HP I+D AVT A
Sbjct: 434 EDSWLRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQIAPADLEAVLVSHPLIIDAAVTAAP 493
Query: 492 DKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRE 551
++ GEIPVAFVVRR +TL+E VI Y+A +VAPY+KVR+VV SIPKS GK+LR+E
Sbjct: 494 NEECGEIPVAFVVRRQETTLSEEDVISYVASQVAPYRKVRKVVMVNSIPKSPTGKILRKE 553
Query: 552 LRKFLTSKL 560
L++ LT+ +
Sbjct: 554 LKRILTNSV 562
|
Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|Q6YYZ2|4CLL3_ORYSJ 4-coumarate--CoA ligase-like 3 OS=Oryza sativa subsp. japonica GN=4CLL3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 514 bits (1324), Expect = e-145, Method: Compositional matrix adjust.
Identities = 300/565 (53%), Positives = 372/565 (65%), Gaps = 25/565 (4%)
Query: 9 SSERINTSQ---WYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSH---KHNGRTALVDS 62
SS RI+ +YS TGIY S HP V LP + SL V + +F+ G LVD+
Sbjct: 15 SSGRISQPPPPPFYSAATGIYSSIHPPVALPTDPSLTLV-AHLFARLPLADPGAPTLVDA 73
Query: 63 LSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIP 122
+ ++S L LV S+A+GLR G+ +G VLLLLPNS+ FPV FLA+L GA+
Sbjct: 74 ATASAVSRADLRRLVASLAAGLRRRHGVRKGSVVLLLLPNSVAFPVSFLAVLAAGAVATT 133
Query: 123 MNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFK------ 176
MNP S +EI Q T L + +L PVV VPE L +
Sbjct: 134 MNPSSSPAEIAAQAR--ATGACLVLASRDGAARLPPLAA-PVVLVPEILDHSAAADDGDD 190
Query: 177 -EGRFSDFHKLIAGKFDLVER---PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVE 232
+ F+ F ++ G PV+ Q D AILYSSGT+G SKG LTH N IA E
Sbjct: 191 DQRVFAAFRAMLDGGGGDGTETAVPVVGQDDAVAILYSSGTSGRSKGVVLTHRNLIAMTE 250
Query: 233 LFVRFEASQYEYLSS-EAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKV 291
LFVRFEASQY + E V++A LPM H+YGLSLFA+GLLS+G +VVVMRRF+A + +
Sbjct: 251 LFVRFEASQYHARGARENVYMAALPMSHVYGLSLFAVGLLSIGATVVVMRRFDAGDAVAA 310
Query: 292 IDKYGVTHFPVVPPILMALTKAAK--GLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPH 349
I +Y VTH P+VPPI+ A+ +AA G+ + + SL QVS GAAP + +I +F+ AFPH
Sbjct: 311 IGRYKVTHMPLVPPIMAAMVRAAAAGGVPPSQVASLVQVSCGAAPITAALIHEFLQAFPH 370
Query: 350 VDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELW 409
VDFIQGYGMTESTAVGTRGFNT K KY SVGLLAPN+ AK+V + LPPG +GELW
Sbjct: 371 VDFIQGYGMTESTAVGTRGFNTSKHKKYTSVGLLAPNMHAKIVHLESSSCLPPGFSGELW 430
Query: 410 LRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISP 469
L GPG MK Y+++ D + K+GWL TGDIAYFD DGYLYIV RLK+ IKY G+QI+P
Sbjct: 431 LHGPGIMKGYLSDDDDACTR--KDGWLRTGDIAYFDLDGYLYIVGRLKDTIKYKGFQIAP 488
Query: 470 ADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKK 529
DLE VLI HPEILDVAVT A D+ GEIPVAFVVRR GS L+ V++Y+A++VAPYK+
Sbjct: 489 GDLEEVLIHHPEILDVAVTSAEDEEAGEIPVAFVVRRSGSNLSCKQVMEYVAKQVAPYKR 548
Query: 530 VRRVVFTKSIPKSAAGKVLRRELRK 554
VR+VVF ++IPKS AGKVLRR LR
Sbjct: 549 VRKVVFVEAIPKSPAGKVLRRLLRN 573
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q336M7|4CLL2_ORYSJ 4-coumarate--CoA ligase-like 2 OS=Oryza sativa subsp. japonica GN=4CLL2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 457 bits (1176), Expect = e-127, Method: Compositional matrix adjust.
Identities = 267/495 (53%), Positives = 323/495 (65%), Gaps = 31/495 (6%)
Query: 60 VDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119
VD+ + ++S LV S+A+GLR I++G VLLLLPNS+ FPV FLA+L GA+
Sbjct: 57 VDAPTAATLSCADFRRLVSSLAAGLRRRLHIARGSLVLLLLPNSLTFPVAFLAVLATGAV 116
Query: 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGR 179
MNP + +EI + L T SL N KL P +A P LV D + +
Sbjct: 117 ATTMNPSSAPAEIAAR--LRDTAPSLVLASTHNAAKL------PPLAAPLVLVPDTFQQQ 168
Query: 180 FSDFHKLIAGKFDL---VERPV-----IRQQDTAAILYSSGTTGASKGAELTHGNFIAAV 231
D L E PV + Q D AA+LYSSGT+G SKG +TH N IA V
Sbjct: 169 HDDDQFDFFFHALLETDPETPVEMGVGVGQDDAAAVLYSSGTSGRSKGVVVTHRNLIAMV 228
Query: 232 ELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKV 291
ELFVRFEASQY + + V+LA LPMFH+YGLSLFA+GLLSLG +VVVMRRF + +K
Sbjct: 229 ELFVRFEASQYTRPARDNVYLAALPMFHVYGLSLFAVGLLSLGCTVVVMRRFNVDDAVKA 288
Query: 292 IDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVD 351
I KY VTH P+VPPI+ AL +A L L SL QVSSGAAP N +I F+ AFPHVD
Sbjct: 289 IRKYKVTHLPLVPPIMSALLRANPPL---ELDSLLQVSSGAAPLNHTLIHHFLHAFPHVD 345
Query: 352 FIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLR 411
FIQGYGMTESTAVGTRGFNT K KY SVGLLAPN+ AK+V +G LPPGS GELWL
Sbjct: 346 FIQGYGMTESTAVGTRGFNTCKHKKYASVGLLAPNMHAKIVHLESGSCLPPGSYGELWLH 405
Query: 412 GPGTMKE------YINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGY 465
GP MKE Y+N+ D + K+GWL TGDIAYFD DGYL+IV RLK+ IKY G+
Sbjct: 406 GPAIMKEFCFVTGYLNDDDDAFTR--KDGWLRTGDIAYFDSDGYLFIVGRLKDTIKYKGF 463
Query: 466 QISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVA 525
QI+PADLE VLI HPEI+DVAVT D+ GEIPVAFVVR+ GSTL+ V++Y+A++V
Sbjct: 464 QIAPADLEAVLIRHPEIIDVAVTSDEDEEAGEIPVAFVVRKSGSTLSCTHVMEYVAKQV- 522
Query: 526 PYKKVRRVVFTKSIP 540
+ RR T+ P
Sbjct: 523 ---RTRRSYTTQHSP 534
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/550 (42%), Positives = 345/550 (62%), Gaps = 15/550 (2%)
Query: 13 INTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQ 72
+N+ + ++SK + LP N SL DV +FI S H GR A +D+ +G ++++ +
Sbjct: 4 VNSRSGFCNSNSTFYSKRTPIPLPPNPSL-DVTTFISSQAHRGRIAFIDASTGQNLTFTE 62
Query: 73 LFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEI 132
L+ V+SVA L GI +G VLLL PNSI FPV+ L+++ LGAI+ NPL + +EI
Sbjct: 63 LWRAVESVADCL-SEIGIRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLNTSNEI 121
Query: 133 KKQVTLCKTKISLAFTIYENVDKLRSWGTT-PVVAVPENLVNDFKE-GRFSDFHKLIAGK 190
KQ+ + LAFT + + K+ + P+V + E V+ + R + K
Sbjct: 122 AKQIK--DSNPVLAFTTSQLLPKISAAAKKLPIVLMDEERVDSVGDVRRLVEMMKKEPSG 179
Query: 191 FDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFV-RFEASQYEYLSSEA 249
+ ER + Q DTA +LYSSGTTG SKG +H N IA V+ V RF + E
Sbjct: 180 NRVKER--VDQDDTATLLYSSGTTGMSKGVISSHRNLIAMVQTIVNRFGSDD-----GEQ 232
Query: 250 VFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMA 309
F+ +PMFHIYGL+ FA GLL+ G +++V+ +FE EM+ I KY T P+VPPIL+A
Sbjct: 233 RFICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVA 292
Query: 310 LTKAAKGLCGN-SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRG 368
+ A + L S+ V G AP + ++ E F +P V +QGYG+TEST +G
Sbjct: 293 MVNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGAST 352
Query: 369 FNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMS 428
++ +Y + G L+ +++ ++VD V G L P TGELWL+GP MK Y +N +AT S
Sbjct: 353 DTVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYFSNEEATSS 412
Query: 429 TIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVT 488
T+D EGWL TGD+ Y DEDG++++VDRLKE+IKY GYQ++PA+LE +L+ HPEI D AV
Sbjct: 413 TLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVAPAELEALLLTHPEITDAAVI 472
Query: 489 GAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVL 548
DK +G+ P+A+VVR+ GS+L+E +++++A++VAPYK++R+V F SIPK+ +GK+L
Sbjct: 473 PFPDKEVGQFPMAYVVRKTGSSLSEKTIMEFVAKQVAPYKRIRKVAFVSSIPKNPSGKIL 532
Query: 549 RRELRKFLTS 558
R++L K TS
Sbjct: 533 RKDLIKIATS 542
|
Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q10S72|4CLL4_ORYSJ 4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust.
Identities = 241/553 (43%), Positives = 349/553 (63%), Gaps = 14/553 (2%)
Query: 13 INTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQ 72
++ Y T + S+ V LPA D +DV SF+ S +H+G ALVD+ +G I++ +
Sbjct: 9 VDARSGYCAATRTFRSRRADVPLPA-DPEVDVVSFLASRRHSGVVALVDAATGRRITFTE 67
Query: 73 LF-PLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSE 131
L+ + + ++ H + +G L+L PNS++FPV LA + LGA++ NPL + +E
Sbjct: 68 LWRAVAGAASALAAHPVSLRKGHVALILSPNSVHFPVAALAAMSLGAVLTTANPLNTPAE 127
Query: 132 IKKQVTLCKTKISLAFTIYENVDKL-RSWGTTPVVAVPENLVNDFKEGRF-SDFHKLIAG 189
I KQV + LAFT E + KL R+ V+ L D + R + ++ A
Sbjct: 128 IAKQV--ADARPVLAFTTRELLPKLPRAHDLRVVLLESARLPGDSSDPRIVATIEEISAT 185
Query: 190 KFDLVERP-VIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFV-RFEASQYEYLSS 247
D R + Q D A +LYSSGTTG SKG TH + I+ V++ + RF + E
Sbjct: 186 TPDPARRKDRVTQDDPATLLYSSGTTGPSKGVVATHRSLISMVQIIMTRF---RLEGSDK 242
Query: 248 EAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPIL 307
FL +PMFH+YGL FA GLL G +VVV+ ++E EML+ I+ YGVT+ P+VPPIL
Sbjct: 243 TETFLCTVPMFHVYGLVAFATGLLGCGATVVVLSKYELPEMLRSINAYGVTYLPLVPPIL 302
Query: 308 MALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTR 367
+A+ K L L +++V SG AP ++IE F +P V+ +QGYG+TESTA+G
Sbjct: 303 VAMVAHPKPL---PLGQMRKVLSGGAPLGKELIEGFREKYPQVEILQGYGLTESTAIGAS 359
Query: 368 GFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATM 427
+ ++ +Y + GLL+PN +AK+VD +G LP TGELW+RGP MK Y NA+AT
Sbjct: 360 TDSAEESRRYGTAGLLSPNTEAKIVDPDSGEALPVNRTGELWIRGPYVMKGYFKNAEATQ 419
Query: 428 STIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAV 487
ST+ +GWL TGD+ Y DEDGYL++VDRLKE+IKY GYQ+ PA+LE +L+ HPE+ DVAV
Sbjct: 420 STLTPDGWLKTGDLCYIDEDGYLFVVDRLKELIKYKGYQVPPAELEALLLTHPEVTDVAV 479
Query: 488 TGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKV 547
D+ +G+ P+A++VR+ GS L+E V++++A++VAPYKKVR+V F IPK+A+GK+
Sbjct: 480 IPFPDREVGQFPMAYIVRKKGSNLSEREVMEFVAKQVAPYKKVRKVAFVTDIPKNASGKI 539
Query: 548 LRRELRKFLTSKL 560
LR++L K TSKL
Sbjct: 540 LRKDLIKLATSKL 552
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q84P25|4CLL2_ARATH 4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/560 (41%), Positives = 348/560 (62%), Gaps = 27/560 (4%)
Query: 13 INTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQ 72
++ + T I++SK + LP N LDV SFI S H G+T VD+++G +S+P+
Sbjct: 21 VDRKSGFCESTSIFYSKREPMALPPNQ-FLDVTSFIASQPHRGKTVFVDAVTGRRLSFPE 79
Query: 73 LFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEI 132
L+ V+ VA G + G+ +G+ V++L PNSI FP++ L+++ LGAI+ NP+ + EI
Sbjct: 80 LWLGVERVA-GCLYALGVRKGNVVIILSPNSILFPIVSLSVMSLGAIITTANPINTSDEI 138
Query: 133 KKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFK--EGRFSDFHKLIAGK 190
KQ+ ++ LAFT + V KL + +P L++D+ + D KL+
Sbjct: 139 SKQIG--DSRPVLAFTTCKLVSKLAAASN---FNLPVVLMDDYHVPSQSYGDRVKLVGRL 193
Query: 191 FDLVE--------RPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELF-VRFEASQ 241
++E + + Q DTAA+LYSSGTTG SKG L+H N IA V+ + RF Q
Sbjct: 194 ETMIETEPSESRVKQRVNQDDTAALLYSSGTTGTSKGVMLSHRNLIALVQAYRARFGLEQ 253
Query: 242 YEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFP 301
+ +PM HI+G FA GL++LG ++VV+ +F+ +++L ++ + ++
Sbjct: 254 RT--------ICTIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVETHRSSYLS 305
Query: 302 VVPPILMALTKAAKGLCGN-SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTE 360
+VPPI++A+ A + L SL V +G AP + ++ E FV +P V +QGYG+TE
Sbjct: 306 LVPPIVVAMVNGANEINSKYDLSSLHTVVAGGAPLSREVTEKFVENYPKVKILQGYGLTE 365
Query: 361 STAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYI 420
STA+ FN ++ +Y + GLLAPN++ K+VD G L TGELW+R P MK Y
Sbjct: 366 STAIAASMFNKEETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRSPTVMKGYF 425
Query: 421 NNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHP 480
N +AT STID EGWL TGD+ Y D DG++++VDRLKE+IK NGYQ++PA+LE +L+ HP
Sbjct: 426 KNKEATASTIDSEGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQVAPAELEALLLAHP 485
Query: 481 EILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIP 540
EI D AV D G+ P+A++VR+ GS L+E+ ++ ++A++V+PYKK+R+V F SIP
Sbjct: 486 EIADAAVIPIPDMKAGQYPMAYIVRKVGSNLSESEIMGFVAKQVSPYKKIRKVTFLASIP 545
Query: 541 KSAAGKVLRRELRKFLTSKL 560
K+ +GK+LRREL K TSKL
Sbjct: 546 KNPSGKILRRELTKLTTSKL 565
|
Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|P0C5B6|4CLL4_ARATH 4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 223/557 (40%), Positives = 333/557 (59%), Gaps = 25/557 (4%)
Query: 13 INTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQ 72
++ + ++SK ++LP N S DV +FI S H G+TA +D+ +G +++
Sbjct: 10 VDPRSGFCKSNSTFYSKRQPLSLPPNLSR-DVTTFISSQPHRGKTAFIDAATGQCLTFSD 68
Query: 73 LFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEI 132
L+ V VA L H GI +GD VL+L PNSI+ PV+ L+++ LGA+ N L + EI
Sbjct: 69 LWRAVDRVADCLYHEVGIRRGDVVLILSPNSIFIPVVCLSVMSLGAVFTTANTLNTSGEI 128
Query: 133 KKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFD 192
KQ+ + +L FT + KL VA+ L +D + +++ +
Sbjct: 129 SKQI--ADSNPTLVFTTRQLAPKLP-------VAISVVLTDDEVYQELTSAIRVVGILSE 179
Query: 193 LVE--------RPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY 244
+V+ R + Q DTA +LYSSGTTG SKG +H N A V F+ +
Sbjct: 180 MVKKEPSGQRVRDRVNQDDTAMMLYSSGTTGPSKGVISSHRNLTAHVARFIS------DN 233
Query: 245 LSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVP 304
L + +F+ +PMFH YGL FA+G ++LG +VV++RRF+ +M+ ++K+ T + P
Sbjct: 234 LKRDDIFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAP 293
Query: 305 PILMALTKAAKGLCGN-SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTA 363
P+L+A+ A + L SLK V G AP + ++ E F+ +P VD +QGY +TES
Sbjct: 294 PVLVAMINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQGYALTESNG 353
Query: 364 VGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNA 423
G + ++ +Y + G L +++A++VD G F+ TGELWL+GP K Y N
Sbjct: 354 GGAFTNSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKGYFKNQ 413
Query: 424 DATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEIL 483
+AT TI+ EGWL TGD+ Y DEDG+L++VDRLKE+IKY GYQ+ PA+LE +LI HP+IL
Sbjct: 414 EATNETINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQVPPAELEALLITHPDIL 473
Query: 484 DVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSA 543
D AV DK G+ P+A+VVR+ S L+E VID+++++VAPYKK+R+V F SIPK+A
Sbjct: 474 DAAVIPFPDKEAGQYPMAYVVRKHESNLSEKQVIDFISKQVAPYKKIRKVSFINSIPKTA 533
Query: 544 AGKVLRRELRKFLTSKL 560
+GK LR++L K TSKL
Sbjct: 534 SGKTLRKDLIKLATSKL 550
|
Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 233/546 (42%), Positives = 333/546 (60%), Gaps = 20/546 (3%)
Query: 24 GIYHSKHPSVNLPA--NDSLLDVDSFIF--SHKHNGRTALVDSLSGYSISYPQLFPLVQS 79
GIY S P++ LP N SL+ SF+F S + + A+ DS +G S+++ QL V
Sbjct: 10 GIYRSLRPTLVLPKDPNTSLV---SFLFRNSSSYPSKLAIADSDTGDSLTFSQLKSAVAR 66
Query: 80 VASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLC 139
+A G H GI + D VL+ PNS FP+ FLA+ +G + NPL +V+E+ KQ+
Sbjct: 67 LAHGF-HRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSKQIKDS 125
Query: 140 KTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFS---DFHKLIAGKFDLVER 196
KI + ++ + DK++ + PVV + + G S F ++ + E
Sbjct: 126 NPKIII--SVNQLFDKIKGF-DLPVVLLGSKDTVEIPPGSNSKILSFDNVMELSEPVSEY 182
Query: 197 PV--IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAV 254
P I+Q DTAA+LYSSGTTG SKG ELTHGNFIAA + + EY VFL
Sbjct: 183 PFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEY---HGVFLCF 239
Query: 255 LPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAA 314
LPMFH++GL++ L G ++V M RFE +LK I+K+ VTH VVPP+ +AL+K +
Sbjct: 240 LPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQS 299
Query: 315 KGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKF 374
+ L SLK + SGAAP ++E+ P+V +QGYGMTE+ + +
Sbjct: 300 I-VKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTETCGIVSVEDPRLGK 358
Query: 375 SKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEG 434
S G+LAP ++A++V G PP GE+W+RGP MK Y+NN AT TIDK+
Sbjct: 359 RNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKGYLNNPQATKETIDKKS 418
Query: 435 WLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKV 494
W+HTGD+ YF+EDG LY+VDR+KE+IKY G+Q++PA+LE +L+ HP+ILD V D+
Sbjct: 419 WVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVSHPDILDAVVIPFPDEE 478
Query: 495 LGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
GE+P+AFVVR S++TE + ++A++VAPYK++RRV F +PKSAAGK+LRREL +
Sbjct: 479 AGEVPIAFVVRSPNSSITEQDIQKFIAKQVAPYKRLRRVSFISLVPKSAAGKILRRELVQ 538
Query: 555 FLTSKL 560
+ SK+
Sbjct: 539 QVRSKM 544
|
Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q84P23|4CLL9_ARATH 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 233/563 (41%), Positives = 332/563 (58%), Gaps = 26/563 (4%)
Query: 6 QTFSSERINTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFS------------HKH 53
+T S I+ S + TGIYHS PS++LP D L F S
Sbjct: 4 KTNDSRLIDRSSGFDQRTGIYHSLRPSLSLPPIDQPLSAAEFALSLLLKSSPPATAGKNI 63
Query: 54 NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHF-GISQGDAVLLLLPNSIYFPVIFLA 112
T LV+S SG +++Y +L V+S+A LR F ++ + +L P+S+ PV++LA
Sbjct: 64 EALTYLVNSSSGDNLTYGELLRRVRSLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLA 123
Query: 113 LLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLV 172
L+ +G +V P NP+ S SE+ QV + + I AF + V KL+S + P+ V +
Sbjct: 124 LMSIGVVVSPANPIGSESEVSHQVEVSEPVI--AFATSQTVKKLQS-SSLPLGTVLMDST 180
Query: 173 NDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVE 232
SD + + + Q D AAIL+SSGTTG KG LTH N IA+
Sbjct: 181 EFLSWLNRSDSSSVNPFQVQ------VNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTA 234
Query: 233 LFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVI 292
V + + + ++ + V L LP+FH++G + + +SLG ++V++ RFE M K +
Sbjct: 235 --VSHQRTLQDPVNYDRVGLFSLPLFHVFGF-MMMIRAISLGETLVLLGRFELEAMFKAV 291
Query: 293 DKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDF 352
+KY VT PV PP+++AL K+ + L+SL+ + G AP I E F FP VD
Sbjct: 292 EKYKVTGMPVSPPLIVALVKS-ELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDI 350
Query: 353 IQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG 412
+QGYG+TES+ F ++ KY SVG ++ N++AK+VD G LPPG TGELWLRG
Sbjct: 351 VQGYGLTESSGPAASTFGPEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRG 410
Query: 413 PGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADL 472
P MK Y+ N A+ T+DKEGWL TGD+ YFD + +LYIVDRLKE+IKY YQ+ P +L
Sbjct: 411 PVIMKGYVGNEKASAETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQVPPVEL 470
Query: 473 ETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRR 532
E +L +P+++D AV D+ GEIP+AF+VR+ GS L EA +ID++A++V PYKKVRR
Sbjct: 471 EQILHSNPDVIDAAVVPFPDEDAGEIPMAFIVRKPGSNLNEAQIIDFVAKQVTPYKKVRR 530
Query: 533 VVFTKSIPKSAAGKVLRRELRKF 555
V F +IPK+ AGK+LRREL K
Sbjct: 531 VAFINAIPKNPAGKILRRELTKI 553
|
Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) into OPDA-CoA. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q3E6Y4|4CLL3_ARATH 4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 220/557 (39%), Positives = 331/557 (59%), Gaps = 23/557 (4%)
Query: 13 INTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQ 72
++ + ++SK + LP N SL DV +FI S G TA +D+ +G+ +++
Sbjct: 10 VDPRSGFCKSNSTFYSKRNPLCLPPNPSL-DVTTFISSQPQRGTTAFIDASTGHRLTFSD 68
Query: 73 LFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEI 132
L+ +V VA L H GI +GD VL+L PNSIY PV+ L+++ LGA+V N L + EI
Sbjct: 69 LWRVVDRVADCLYHEVGIRRGDVVLILSPNSIYIPVVCLSVMSLGAVVTTANTLNTSGEI 128
Query: 133 KKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFD 192
KQ+ ++ +L FT + KL + VV E D K + +++ +
Sbjct: 129 SKQI--AQSNPTLVFTTSQLAPKLAA--AISVVLTDEE---DEKRVELTSGVRVVGILSE 181
Query: 193 LVE--------RPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY 244
+++ R + Q DTA +LYSSGTTG SKG +H N A V ++ + + E
Sbjct: 182 MMKKETSGQRVRDRVNQDDTAMMLYSSGTTGTSKGVISSHRNLTAYVAKYIDDKWKRDE- 240
Query: 245 LSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVP 304
+F+ +PMFH +GL FA+G ++ G +VV++RRF +M++ ++KY T + P
Sbjct: 241 -----IFVCTVPMFHSFGLLAFAMGSVASGSTVVILRRFGLDDMMQAVEKYKATILSLAP 295
Query: 305 PILMALTKAAKGLCGN-SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTA 363
P+L+A+ A L L SL++V G AP + ++++ F+ +P V+ QGY +TES
Sbjct: 296 PVLVAMINGADQLKAKYDLTSLRKVRCGGAPLSKEVMDSFLEKYPTVNIFQGYALTESHG 355
Query: 364 VGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNA 423
G + ++ KY +VGLL+ I+A++VD G + GELWL+GP K Y N
Sbjct: 356 SGASTESVEESLKYGAVGLLSSGIEARIVDPDTGRVMGVNQPGELWLKGPSISKGYFGNE 415
Query: 424 DATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEIL 483
+AT TI+ EGWL GD+ Y DEDG+L++VDRLKE+IKY GYQ+ PA+LE +LI HP IL
Sbjct: 416 EATNETINLEGWLKLGDLCYIDEDGFLFVVDRLKELIKYKGYQVPPAELEALLIAHPHIL 475
Query: 484 DVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSA 543
D AV D+ G+ P+A+V R+ S L+E VID+++ +VAPYKK+R+V F SIPK+A
Sbjct: 476 DAAVIPFPDREAGQYPMAYVARKPESNLSEKEVIDFISNQVAPYKKIRKVAFISSIPKTA 535
Query: 544 AGKVLRRELRKFLTSKL 560
+GK LR++L K TSKL
Sbjct: 536 SGKTLRKDLIKLSTSKL 552
|
Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 560 | ||||||
| 356497603 | 545 | PREDICTED: 4-coumarate--CoA ligase-like | 0.960 | 0.987 | 0.661 | 0.0 | |
| 224074401 | 544 | 4-coumarate-coa ligase [Populus trichoca | 0.969 | 0.998 | 0.661 | 0.0 | |
| 224074393 | 557 | acyl:coa ligase [Populus trichocarpa] gi | 0.969 | 0.974 | 0.646 | 0.0 | |
| 357484743 | 555 | 4-coumarate-CoA ligase [Medicago truncat | 0.967 | 0.976 | 0.647 | 0.0 | |
| 225463242 | 571 | PREDICTED: 4-coumarate--CoA ligase-like | 0.962 | 0.943 | 0.631 | 0.0 | |
| 449453328 | 577 | PREDICTED: 4-coumarate--CoA ligase-like | 0.975 | 0.946 | 0.625 | 0.0 | |
| 29888152 | 566 | 4-coumarate-CoA ligase-like protein [Ara | 0.966 | 0.955 | 0.617 | 0.0 | |
| 357474283 | 542 | 4-coumarate CoA ligase [Medicago truncat | 0.928 | 0.959 | 0.633 | 0.0 | |
| 15234087 | 566 | 4-coumarate--CoA ligase-like 6 [Arabidop | 0.966 | 0.955 | 0.615 | 0.0 | |
| 26449818 | 566 | putative 4-coumarate-CoA ligase [Arabido | 0.966 | 0.955 | 0.615 | 0.0 |
| >gi|356497603|ref|XP_003517649.1| PREDICTED: 4-coumarate--CoA ligase-like 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/544 (66%), Positives = 438/544 (80%), Gaps = 6/544 (1%)
Query: 17 QWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQLFPL 76
W+SP++GIYHSKH V+LP ND LD+ SFIFSH+HNG +ALVDS SG SISYP+L PL
Sbjct: 8 HWFSPKSGIYHSKHAPVDLP-NDPFLDLVSFIFSHRHNGVSALVDSSSGCSISYPKLLPL 66
Query: 77 VQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQV 136
V+SVASGL H G+SQGD VLLLLPNSIY+P++FLA+LY+GAIV P+NPL SV EI++QV
Sbjct: 67 VKSVASGL-HRMGVSQGDVVLLLLPNSIYYPIVFLAVLYIGAIVTPLNPLSSVYEIRRQV 125
Query: 137 TLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVER 196
+ C +SLAFT+ EN KL G + V+AVPEN K+G FS F LI+ FDL +R
Sbjct: 126 SECG--VSLAFTVPENEKKLEPLGIS-VIAVPEN-EKGLKDGCFSCFCDLISCDFDLPKR 181
Query: 197 PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLP 256
PVI+Q DTA ILYSSGTTG SKG L+H N +A VELFVRFEASQYE V+LAVLP
Sbjct: 182 PVIKQDDTAGILYSSGTTGVSKGVVLSHKNLVAMVELFVRFEASQYEGSCLRNVYLAVLP 241
Query: 257 MFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKG 316
MFH+YGLSLFA+GLLSLG +VVVMR+F+ E+++VID+Y VTHFPVVPP+L AL K AKG
Sbjct: 242 MFHVYGLSLFAVGLLSLGSTVVVMRKFDIDEVVRVIDEYKVTHFPVVPPMLTALIKRAKG 301
Query: 317 LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSK 376
+ G +SL QVSSGAAP + +I +F+ AFP+VDFIQGYGMTESTAVGTRGFNT+KF
Sbjct: 302 VNGGEFQSLVQVSSGAAPLSMGVINEFIRAFPNVDFIQGYGMTESTAVGTRGFNTEKFRN 361
Query: 377 YFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWL 436
Y S+GLLAPN++AKVVDW G FLPPGS+GEL LRGP M Y+NN + TMSTIDK+GWL
Sbjct: 362 YSSIGLLAPNMEAKVVDWNTGAFLPPGSSGELRLRGPSIMTGYLNNEEVTMSTIDKDGWL 421
Query: 437 HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLG 496
HTGD+ YFD DGYL+I DRLK++IKY G+QI+PADLE VLI HPE++DVAVT AMD+ G
Sbjct: 422 HTGDVVYFDHDGYLHISDRLKDIIKYKGFQIAPADLEAVLILHPEVVDVAVTRAMDEETG 481
Query: 497 EIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFL 556
EIPVAFVVR+ GS L+ ++D++A++VAPYKKVR+V FT IP+SA GK+LR++LR +L
Sbjct: 482 EIPVAFVVRKVGSVLSPKHIMDFVAEQVAPYKKVRKVFFTDKIPRSATGKILRKQLRNYL 541
Query: 557 TSKL 560
TS L
Sbjct: 542 TSNL 545
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224074401|ref|XP_002304364.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222841796|gb|EEE79343.1| 4-coumarate-coa ligase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/561 (66%), Positives = 440/561 (78%), Gaps = 18/561 (3%)
Query: 1 MEKFLQTFSSERINTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSH-KHNGRTAL 59
MEK T ++ + +WYSPETGIY SKHP + LPA D LDV SFIFSH HNG TAL
Sbjct: 1 MEKL--TATASKTTLPEWYSPETGIYSSKHPPIPLPA-DPFLDVVSFIFSHHNHNGLTAL 57
Query: 60 VDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119
+DS SG+SISY ++ PLV+SVASGL + GI QGD VLLLLPNSI+FP++FL +LYLG I
Sbjct: 58 IDSSSGFSISYSKILPLVKSVASGLSN-MGIKQGDVVLLLLPNSIHFPIVFLGVLYLGGI 116
Query: 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGR 179
V MNPL S E+K+++ C I AF E V K + G PV+ VPEN+
Sbjct: 117 VSTMNPLSSELEVKQRIVDCNACI--AFVELEKVCKFQPLGI-PVIGVPENV-------- 165
Query: 180 FSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEA 239
+F + I K D+ +PVIRQQDTAAI+YSSGTT ASKG LTH NFI+ VELFV+FEA
Sbjct: 166 --NFDEKIYSKGDVGVKPVIRQQDTAAIMYSSGTTAASKGVVLTHRNFISMVELFVKFEA 223
Query: 240 SQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTH 299
SQYEY S++ V+LAVLPMFHIYGLSLF +GLLSLG S+VVMR+F+ SEM+KVID+YGVTH
Sbjct: 224 SQYEYSSTDNVYLAVLPMFHIYGLSLFVVGLLSLGSSIVVMRKFDVSEMVKVIDRYGVTH 283
Query: 300 FPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMT 359
FPVVPPIL ALT+ AKG+CGNSLK LK VS GAAP K I+DFV PHVDFIQGYG+T
Sbjct: 284 FPVVPPILTALTRTAKGVCGNSLKCLKLVSCGAAPLFGKTIQDFVEVLPHVDFIQGYGLT 343
Query: 360 ESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEY 419
ESTAVGTRG NT+KF KY S+GLLAPNI+AKVVDW+ G LPPG +GELW+RGPG MKEY
Sbjct: 344 ESTAVGTRGLNTEKFQKYSSIGLLAPNIEAKVVDWITGALLPPGGSGELWIRGPGVMKEY 403
Query: 420 INNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICH 479
+N +AT TIDK+GWLHTGD+ Y D DGYLY+VDRLKE+IKY G+QI+PADLE VLI H
Sbjct: 404 LNGGEATALTIDKDGWLHTGDVVYADHDGYLYVVDRLKEIIKYKGFQIAPADLEAVLISH 463
Query: 480 PEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSI 539
EILD AV +DK GEIPVAFVV+R GS LT+ A+I+Y+A++VAPYKKVR+V+FT+SI
Sbjct: 464 CEILDAAVIPVVDKECGEIPVAFVVKRQGSMLTQEAIINYVAEQVAPYKKVRKVIFTQSI 523
Query: 540 PKSAAGKVLRRELRKFLTSKL 560
PKSAAGK+LRREL+ LTSKL
Sbjct: 524 PKSAAGKILRRELKCSLTSKL 544
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224074393|ref|XP_002304363.1| acyl:coa ligase [Populus trichocarpa] gi|222841795|gb|EEE79342.1| acyl:coa ligase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/574 (64%), Positives = 440/574 (76%), Gaps = 31/574 (5%)
Query: 1 MEKFLQTFSSERINTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSH-KHNGRTAL 59
MEK T ++ + +WYSPETGIY SKHP + LPA D LDV SFIFSH HNG TAL
Sbjct: 1 MEKL--TATASKTTLPEWYSPETGIYSSKHPPIPLPA-DPFLDVVSFIFSHHNHNGLTAL 57
Query: 60 VDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119
+DS SG+SISY ++ PLV+SVASGL + GI QGD VLLLLPNSI+FP++FL +LYLG I
Sbjct: 58 IDSSSGFSISYSKILPLVKSVASGLSN-MGIKQGDVVLLLLPNSIHFPIVFLGVLYLGGI 116
Query: 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGR 179
V MNPL S E+K+++ C I AF E V K + G PV+ VPEN+
Sbjct: 117 VSTMNPLSSELEVKQRIVDCNACI--AFVELEKVCKFQPLGI-PVIGVPENV-------- 165
Query: 180 FSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEA 239
+F + I K D+ +PVIRQQDTAAI+YSSGTT ASKG LTH NFI+ VELFV+FEA
Sbjct: 166 --NFDEKIYSKGDVGVKPVIRQQDTAAIMYSSGTTAASKGVVLTHRNFISMVELFVKFEA 223
Query: 240 SQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTH 299
SQYEY S++ V+LAVLPMFHIYGLSLF +GLLSLG S+VVMR+F+ SEM+KVID+YGVTH
Sbjct: 224 SQYEYSSTDNVYLAVLPMFHIYGLSLFVVGLLSLGSSIVVMRKFDVSEMVKVIDRYGVTH 283
Query: 300 FPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMT 359
FPVVPPIL ALT+ AKG+CGNSLK LK VS GAAP K I+DFV PHVDFIQGYG+T
Sbjct: 284 FPVVPPILTALTRTAKGVCGNSLKCLKLVSCGAAPLFGKTIQDFVEVLPHVDFIQGYGLT 343
Query: 360 ESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEY 419
ESTAVGTRG NT+KF KY S+GLLAPNI+AKVVDW+ G LPPG +GELW+RGPG MKEY
Sbjct: 344 ESTAVGTRGLNTEKFQKYSSIGLLAPNIEAKVVDWITGALLPPGGSGELWIRGPGVMKEY 403
Query: 420 INNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGY-------------Q 466
+N +AT TIDK+GWLHTGD+ Y D DGYLY+VDRLKE+IKY G+ Q
Sbjct: 404 LNGGEATALTIDKDGWLHTGDVVYADHDGYLYVVDRLKEIIKYKGFQFVDLYVTILSLLQ 463
Query: 467 ISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAP 526
I+PADLE VLI H EILD AV +DK GEIPVAFVV+R GS LT+ A+I+Y+A++VAP
Sbjct: 464 IAPADLEAVLISHCEILDAAVIPVVDKECGEIPVAFVVKRQGSMLTQEAIINYVAEQVAP 523
Query: 527 YKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560
YKKVR+V+FT+SIPKSAAGK+LRREL+ LTSKL
Sbjct: 524 YKKVRKVIFTQSIPKSAAGKILRRELKCSLTSKL 557
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357484743|ref|XP_003612659.1| 4-coumarate-CoA ligase [Medicago truncatula] gi|355513994|gb|AES95617.1| 4-coumarate-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/548 (64%), Positives = 424/548 (77%), Gaps = 6/548 (1%)
Query: 13 INTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQ 72
I WYSP+TGIY+S H +LP D LDV FIFSH H+G AL+DSLSG SISY
Sbjct: 14 ITHPSWYSPKTGIYNSIHSPRSLPT-DPFLDVVCFIFSHPHDGVLALIDSLSGTSISYSN 72
Query: 73 LFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEI 132
L LV+S+ASGL H G+SQGD VLLLLPNSIY+P+ L+++YLGA+V P+NPL SV EI
Sbjct: 73 LLTLVKSLASGL-HKMGVSQGDVVLLLLPNSIYYPIALLSVMYLGAVVTPLNPLSSVDEI 131
Query: 133 KKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFD 192
+K+V C +S AFTI ENV KL G P+++VPEN D K FS F LI+G F
Sbjct: 132 RKRVNDCG--VSFAFTIPENVKKLEPLGI-PIISVPEN-EKDLKHACFSCFFNLISGNFV 187
Query: 193 LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFL 252
L ++ VI+Q+DTAAIL+SSGTTG SKG LTH N IA VEL RFEAS+YEY SS+ V+L
Sbjct: 188 LPQKSVIKQEDTAAILFSSGTTGVSKGVVLTHRNLIAMVELSARFEASKYEYSSSKNVYL 247
Query: 253 AVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTK 312
VLPMFH+YGLSLFA GLLSLG ++VVMR+F+ E ++VIDKY VTHF VVPPIL ALT
Sbjct: 248 DVLPMFHLYGLSLFATGLLSLGSTIVVMRKFDIDETIRVIDKYNVTHFHVVPPILTALTA 307
Query: 313 AAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTK 372
AKG+ G+ L+SL+QV S AAP +K I DFV AFPHVDFIQGYGMTES VG GFNT+
Sbjct: 308 KAKGVNGSKLQSLRQVGSSAAPLTTKAINDFVQAFPHVDFIQGYGMTESGTVGACGFNTE 367
Query: 373 KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDK 432
KF Y S+GLLAPN++AKVVDW +G FLPPG +GELWLRGP TMK Y+NN +ATMST+DK
Sbjct: 368 KFRNYSSLGLLAPNMEAKVVDWNSGAFLPPGRSGELWLRGPSTMKGYLNNEEATMSTVDK 427
Query: 433 EGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMD 492
+GWLHTGDI YFD+DGYLY+ DRLKE IKY G+QI PADLE VLI HPEI DVAVTGA D
Sbjct: 428 DGWLHTGDIVYFDQDGYLYLSDRLKEFIKYKGFQIPPADLEAVLILHPEIADVAVTGAKD 487
Query: 493 KVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
+ GEIPVAFVV++ GS L+ VID++A++VAP+KKVR+VVFT IP+S GK+LR++L
Sbjct: 488 EEAGEIPVAFVVKKVGSVLSPKDVIDFVAKQVAPFKKVRKVVFTDKIPRSVTGKILRKQL 547
Query: 553 RKFLTSKL 560
R L SKL
Sbjct: 548 RNCLPSKL 555
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463242|ref|XP_002270360.1| PREDICTED: 4-coumarate--CoA ligase-like 6 [Vitis vinifera] gi|296083381|emb|CBI23270.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/545 (63%), Positives = 418/545 (76%), Gaps = 6/545 (1%)
Query: 17 QWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQLFPL 76
W+SPETGIY S +PS+ +P+ D LD+ SFIFS HNG +AL D SG+SISY QL PL
Sbjct: 32 HWFSPETGIYSSTYPSLPIPS-DPHLDIVSFIFSKNHNGVSALTDYSSGFSISYSQLHPL 90
Query: 77 VQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQV 136
V+S+ASGL H G SQGD +LLLLPNSIYFPVIFLA+L LG I MNPL S++EI+KQ
Sbjct: 91 VKSMASGL-HQMGFSQGDVILLLLPNSIYFPVIFLAVLSLGGIATTMNPLSSLTEIRKQT 149
Query: 137 TLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVER 196
C +SLAFT+ E +KL + G PV+ VPEN + K FS FH LI+G D R
Sbjct: 150 VGCS--LSLAFTVPETSEKLGALGV-PVIGVPENGSFNSKSKEFSTFHWLISGDPDCCPR 206
Query: 197 PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLP 256
PVI Q D AAI+YSSGTTG++K LTHGNFIA VE FVRFEAS YE SE V+LAVLP
Sbjct: 207 PVINQHDVAAIMYSSGTTGSTKAVVLTHGNFIAMVETFVRFEASLYENSGSENVYLAVLP 266
Query: 257 MFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKG 316
MFHIYGLSLF GL+SLG ++VVMR+F+A+EM+K ID+Y VTHFPVVPP+LMAL K+A+
Sbjct: 267 MFHIYGLSLFVTGLISLGSAIVVMRKFDANEMVKAIDRYRVTHFPVVPPVLMALIKSARA 326
Query: 317 LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSK 376
SLKQV GAAP K I++FV HVD IQGYGMTESTAVGTRGFNTKK
Sbjct: 327 AGAGCFGSLKQVCCGAAPLTQKSIQEFVQTLSHVDLIQGYGMTESTAVGTRGFNTKKLRN 386
Query: 377 YFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWL 436
Y S+GLLAPN++AKVVD +G LPPG+ GELWL+GPG MK Y+N+ +AT+STIDKEGWL
Sbjct: 387 YSSIGLLAPNMRAKVVDLSSGSLLPPGNCGELWLQGPGIMKGYLNDEEATISTIDKEGWL 446
Query: 437 HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLG 496
HTGDI FD+DGYLY+ R+KE+IKY G+QI+P DLE++LI HPEI D AV G D+ G
Sbjct: 447 HTGDIVSFDQDGYLYMFSRIKEIIKYKGFQIAPVDLESILISHPEISDAAVAGVGDEEAG 506
Query: 497 EIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK-F 555
E+PVAFVV+R GS L++AA+I+Y+ ++VAPYKKVR+V+FT IPKSAAGK+LRREL+ F
Sbjct: 507 EVPVAFVVKRPGSALSQAAIINYVEKQVAPYKKVRKVIFTHPIPKSAAGKILRRELKHLF 566
Query: 556 LTSKL 560
+ S++
Sbjct: 567 MISRI 571
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453328|ref|XP_004144410.1| PREDICTED: 4-coumarate--CoA ligase-like 6-like [Cucumis sativus] gi|449500076|ref|XP_004160997.1| PREDICTED: 4-coumarate--CoA ligase-like 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/556 (62%), Positives = 428/556 (76%), Gaps = 10/556 (1%)
Query: 10 SERINT-SQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHK--HNGRTALVDSLSGY 66
SER N WYSP+TGI S H LP+ D LDV SFIFS + HNG +AL+DS +G
Sbjct: 27 SERTNKYPNWYSPDTGICRSVHGYRKLPS-DPFLDVVSFIFSFQFQHNGHSALIDSSTGN 85
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPL 126
SISY +LFP+V+S+ASGL H+ GISQGD VLL+LPNSI+FP+I L LYLGA+V M P
Sbjct: 86 SISYKELFPMVKSMASGL-HNLGISQGDVVLLMLPNSIFFPIIILGALYLGAVVTTMFPQ 144
Query: 127 LSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENL-VNDFKEGRFSDFHK 185
S SEIKK++T C + LAF I + + + G + VPEN N + FS F++
Sbjct: 145 SSSSEIKKRITDCNVR--LAFAITQKIKNFEALGIK-TIGVPENTNFNLMRSMGFSSFYE 201
Query: 186 LIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYL 245
LI+G DL+++PVIRQ+DTAAIL+SSGTTG SKG L+H NFI+ +ELFVRFEASQYEYL
Sbjct: 202 LISGGSDLIKKPVIRQEDTAAILFSSGTTGVSKGVMLSHRNFISTIELFVRFEASQYEYL 261
Query: 246 SSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPP 305
++ V+LA +PMFHIYGLS+F +GL+SLG SVVVM +F+ +++K ID++ VTHFPVVPP
Sbjct: 262 PTKNVYLAAVPMFHIYGLSIFVMGLMSLGSSVVVMSKFDVKDVVKAIDRFKVTHFPVVPP 321
Query: 306 ILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVG 365
IL AL + A+ + + +SLKQVS GAA ++ K I++FV A PHVDFIQGYGMTESTAVG
Sbjct: 322 ILTALARTAEKIGVHRFRSLKQVSCGAAASSKKTIDNFVHALPHVDFIQGYGMTESTAVG 381
Query: 366 TRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADA 425
TRGFNTK Y SVGLLAPN +AKVVDWV G +PPG TGEL LRGPG+MK Y+NN +A
Sbjct: 382 TRGFNTKNARNYLSVGLLAPNTEAKVVDWVTGSSMPPGKTGELLLRGPGSMKGYLNNPEA 441
Query: 426 TMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDV 485
T T+D+E WLHTGDI YFD DGYLY+VDRLKEVIKY G+QI+P DLE V+I HPE+LD
Sbjct: 442 TTFTMDQENWLHTGDIVYFDRDGYLYVVDRLKEVIKYKGFQIAPTDLEAVVITHPEVLDT 501
Query: 486 AVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAG 545
AV A D+ GEIPVAFVV++ GS LT+ V+DY+AQ+VAPYKKVR+V+FT+SIPKSAAG
Sbjct: 502 AVAAAKDEECGEIPVAFVVKKPGSALTQKDVVDYVAQQVAPYKKVRKVIFTESIPKSAAG 561
Query: 546 KVLRRELRK-FLTSKL 560
KVLRREL+K F SKL
Sbjct: 562 KVLRRELQKHFPASKL 577
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|29888152|gb|AAP03017.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/549 (61%), Positives = 429/549 (78%), Gaps = 8/549 (1%)
Query: 14 NTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQL 73
N W+S +TGIY SK PS++LP D LD S +FSHKH+G TAL+DSL+G+SIS+ +L
Sbjct: 20 NPPFWFSSKTGIYTSKFPSLHLPV-DPNLDAVSALFSHKHHGDTALIDSLTGFSISHTEL 78
Query: 74 FPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIK 133
+VQS+A+G+ H G+ QGD V L+LPNS+YFP+IFL+L+ LGAIV MNP S+ EIK
Sbjct: 79 QIMVQSMAAGIYHVLGVRQGDVVSLVLPNSVYFPMIFLSLISLGAIVTTMNPSSSLGEIK 138
Query: 134 KQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSD--FHKLIAGKF 191
KQV+ C + LAFT ENV+KL S G + V++VPE+ DF R + F+ ++ F
Sbjct: 139 KQVSECS--VGLAFTSTENVEKLSSLGVS-VISVPESY--DFDSIRIENPKFYSIMKESF 193
Query: 192 DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVF 251
V +P+I+Q D AAI+YSSGTTGASKG LTH N IA++ELFVRFEASQYEY S V+
Sbjct: 194 GFVPKPLIKQDDVAAIMYSSGTTGASKGVLLTHRNLIASMELFVRFEASQYEYPGSSNVY 253
Query: 252 LAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALT 311
LA LP+ HIYGLSLF +GLLSLG ++VVM+RF+AS+++ VI+++ +THFPVVPP+LMALT
Sbjct: 254 LAALPLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPMLMALT 313
Query: 312 KAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNT 371
K AKG+CG KSLKQVSSGAAP + K IEDF+ PHVD IQGYGMTESTAVGTRGFN+
Sbjct: 314 KKAKGVCGEVFKSLKQVSSGAAPLSRKFIEDFLQTLPHVDLIQGYGMTESTAVGTRGFNS 373
Query: 372 KKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID 431
+K S+Y SVGLLAPN+QAKVVDW +G FLPPG+ GELW++GPG MK Y+NN AT +I
Sbjct: 374 EKLSRYSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPGVMKGYLNNPKATQMSIV 433
Query: 432 KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAM 491
++ WL TGDIAYFDEDGYL+IVDR+KE+IKY G+QI+PADLE VL+ HP I+D AVT A
Sbjct: 434 EDSWLRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQIAPADLEAVLVSHPLIIDAAVTAAP 493
Query: 492 DKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRE 551
++ GEIPVAFVVRR +TL+E VI Y+A +VAPY+KVR+VV SIPKS GK+LR+E
Sbjct: 494 NEECGEIPVAFVVRRQETTLSEEDVISYVASQVAPYRKVRKVVMVNSIPKSPTGKILRKE 553
Query: 552 LRKFLTSKL 560
L++ LT+ +
Sbjct: 554 LKRILTNSV 562
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357474283|ref|XP_003607426.1| 4-coumarate CoA ligase [Medicago truncatula] gi|355508481|gb|AES89623.1| 4-coumarate CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/545 (63%), Positives = 416/545 (76%), Gaps = 25/545 (4%)
Query: 17 QWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQLFPL 76
WYS +TGIY+S H NLP D LD+ SFIFSH H+G
Sbjct: 22 HWYSSKTGIYNSIHTPRNLPT-DPFLDIVSFIFSHSHDGG-------------------F 61
Query: 77 VQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQV 136
++S+AS L H G+SQGD VLLLLPNSIY+PVI LA+LYLGA+ P+NPL SV EI+KQV
Sbjct: 62 IKSMASAL-HKMGVSQGDVVLLLLPNSIYYPVILLAVLYLGAVFTPLNPLSSVGEIRKQV 120
Query: 137 TLCKTKISLAFTIYENVDKLRSWG-TTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVE 195
C +S AFTI ENV KL G P++AVPEN D + FS F L+ GKFDL +
Sbjct: 121 QECG--VSFAFTIPENVKKLELLGGINPIIAVPEN-EKDLRNDGFSSFFNLLYGKFDLPQ 177
Query: 196 RPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVL 255
R VI+Q+DTA ILYSSGTTG SKG LTH N I+ VELFVRFEASQY+Y S++VFLAVL
Sbjct: 178 RVVIKQEDTAGILYSSGTTGVSKGVVLTHRNLISMVELFVRFEASQYDYSCSKSVFLAVL 237
Query: 256 PMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAK 315
PMFH+YGLSLFA GLLSLG +V+VMR+F+ E+++VIDKY VTHFPVVPP+L ALT AK
Sbjct: 238 PMFHVYGLSLFAAGLLSLGSTVIVMRKFDIDEVIRVIDKYNVTHFPVVPPMLSALTMKAK 297
Query: 316 GLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFS 375
G+ G L+SL+QVS GAAP + +I FV AFP+VDFIQGYGMTESTAVGTRGFNT+KF
Sbjct: 298 GVNGIKLQSLRQVSCGAAPLSIGVISSFVHAFPNVDFIQGYGMTESTAVGTRGFNTEKFH 357
Query: 376 KYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGW 435
Y S+GLLAPN +AKVVDW NG FLPPGS GELWLRGP M+ Y+NN +AT+STIDK+GW
Sbjct: 358 NYSSIGLLAPNTEAKVVDWNNGTFLPPGSCGELWLRGPSIMRGYLNNEEATISTIDKDGW 417
Query: 436 LHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVL 495
LHTGDI YFD+DGYL++ DRLK++IKY G+QI+PADLE VLI HPEI+D AVT A D+ +
Sbjct: 418 LHTGDIVYFDQDGYLHLADRLKDIIKYKGFQIAPADLEAVLILHPEIIDAAVTAAEDEEI 477
Query: 496 GEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555
GEIPVAFVV++ GS L+ V++Y+A++VAPYKKVR+V FT IP+S GK+LR++LR
Sbjct: 478 GEIPVAFVVKKVGSVLSPKDVVNYVAEQVAPYKKVRKVFFTDKIPRSPTGKILRKQLRHC 537
Query: 556 LTSKL 560
LTSKL
Sbjct: 538 LTSKL 542
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15234087|ref|NP_193636.1| 4-coumarate--CoA ligase-like 6 [Arabidopsis thaliana] gi|158564048|sp|Q84P24.2|4CLL6_ARATH RecName: Full=4-coumarate--CoA ligase-like 6; AltName: Full=4-coumarate--CoA ligase isoform 7; Short=At4CL7 gi|2832629|emb|CAA16758.1| 4-coumarate-CoA ligase-like [Arabidopsis thaliana] gi|7268695|emb|CAB78903.1| 4-coumarate-CoA ligase-like [Arabidopsis thaliana] gi|36312875|gb|AAQ86592.1| 4-coumarate CoA ligase isoform 7 [Arabidopsis thaliana] gi|332658725|gb|AEE84125.1| 4-coumarate--CoA ligase-like 6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/549 (61%), Positives = 428/549 (77%), Gaps = 8/549 (1%)
Query: 14 NTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQL 73
N W+S +TGIY SK PS++LP D LD S +FSHKH+G TAL+DSL+G+SIS+ +L
Sbjct: 20 NPPFWFSSKTGIYTSKFPSLHLPV-DPNLDAVSALFSHKHHGDTALIDSLTGFSISHTEL 78
Query: 74 FPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIK 133
+VQS+A+G+ H G+ QGD V L+LPNS+YFP+IFL+L+ LGAIV MNP S+ EIK
Sbjct: 79 QIMVQSMAAGIYHVLGVRQGDVVSLVLPNSVYFPMIFLSLISLGAIVTTMNPSSSLGEIK 138
Query: 134 KQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSD--FHKLIAGKF 191
KQV+ C + LAFT ENV+KL S G + V++V E+ DF R + F+ ++ F
Sbjct: 139 KQVSECS--VGLAFTSTENVEKLSSLGVS-VISVSESY--DFDSIRIENPKFYSIMKESF 193
Query: 192 DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVF 251
V +P+I+Q D AAI+YSSGTTGASKG LTH N IA++ELFVRFEASQYEY S V+
Sbjct: 194 GFVPKPLIKQDDVAAIMYSSGTTGASKGVLLTHRNLIASMELFVRFEASQYEYPGSSNVY 253
Query: 252 LAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALT 311
LA LP+ HIYGLSLF +GLLSLG ++VVM+RF+AS+++ VI+++ +THFPVVPP+LMALT
Sbjct: 254 LAALPLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPMLMALT 313
Query: 312 KAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNT 371
K AKG+CG KSLKQVSSGAAP + K IEDF+ PHVD IQGYGMTESTAVGTRGFN+
Sbjct: 314 KKAKGVCGEVFKSLKQVSSGAAPLSRKFIEDFLQTLPHVDLIQGYGMTESTAVGTRGFNS 373
Query: 372 KKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID 431
+K S+Y SVGLLAPN+QAKVVDW +G FLPPG+ GELW++GPG MK Y+NN AT +I
Sbjct: 374 EKLSRYSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPGVMKGYLNNPKATQMSIV 433
Query: 432 KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAM 491
++ WL TGDIAYFDEDGYL+IVDR+KE+IKY G+QI+PADLE VL+ HP I+D AVT A
Sbjct: 434 EDSWLRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQIAPADLEAVLVSHPLIIDAAVTAAP 493
Query: 492 DKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRE 551
++ GEIPVAFVVRR +TL+E VI Y+A +VAPY+KVR+VV SIPKS GK+LR+E
Sbjct: 494 NEECGEIPVAFVVRRQETTLSEEDVISYVASQVAPYRKVRKVVMVNSIPKSPTGKILRKE 553
Query: 552 LRKFLTSKL 560
L++ LT+ +
Sbjct: 554 LKRILTNSV 562
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|26449818|dbj|BAC42032.1| putative 4-coumarate-CoA ligase [Arabidopsis thaliana] gi|29028936|gb|AAO64847.1| At4g19010 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/549 (61%), Positives = 427/549 (77%), Gaps = 8/549 (1%)
Query: 14 NTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQL 73
N W+S +TGIY SK PS++LP D LD S +FSHKH+G TAL+DSL+G+SIS+ +L
Sbjct: 20 NPPFWFSSKTGIYTSKFPSLHLPV-DPNLDAVSALFSHKHHGDTALIDSLTGFSISHTEL 78
Query: 74 FPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIK 133
+VQS+A+G H G+ QGD V L+LPNS+YFP+IFL+L+ LGAIV MNP S+ EIK
Sbjct: 79 QIMVQSMAAGTYHVLGVRQGDVVSLVLPNSVYFPMIFLSLISLGAIVTTMNPSSSLGEIK 138
Query: 134 KQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSD--FHKLIAGKF 191
KQV+ C + LAFT ENV+KL S G + V++V E+ DF R + F+ ++ F
Sbjct: 139 KQVSECS--VGLAFTSTENVEKLSSLGVS-VISVSESY--DFDSIRIENPKFYSIMKESF 193
Query: 192 DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVF 251
V +P+I+Q D AAI+YSSGTTGASKG LTH N IA++ELFVRFEASQYEY S V+
Sbjct: 194 GFVPKPLIKQDDVAAIMYSSGTTGASKGVLLTHRNLIASMELFVRFEASQYEYPGSSNVY 253
Query: 252 LAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALT 311
LA LP+ HIYGLSLF +GLLSLG ++VVM+RF+AS+++ VI+++ +THFPVVPP+LMALT
Sbjct: 254 LAALPLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPMLMALT 313
Query: 312 KAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNT 371
K AKG+CG KSLKQVSSGAAP + K IEDF+ PHVD IQGYGMTESTAVGTRGFN+
Sbjct: 314 KKAKGVCGEVFKSLKQVSSGAAPLSRKFIEDFLQTLPHVDLIQGYGMTESTAVGTRGFNS 373
Query: 372 KKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID 431
+K S+Y SVGLLAPN+QAKVVDW +G FLPPG+ GELW++GPG MK Y+NN AT +I
Sbjct: 374 EKLSRYSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPGVMKGYLNNPKATQMSIV 433
Query: 432 KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAM 491
++ WL TGDIAYFDEDGYL+IVDR+KE+IKY G+QI+PADLE VL+ HP I+D AVT A
Sbjct: 434 EDSWLRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQIAPADLEAVLVSHPLIIDAAVTAAP 493
Query: 492 DKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRE 551
++ GEIPVAFVVRR +TL+E VI Y+A +VAPY+KVR+VV SIPKS GK+LR+E
Sbjct: 494 NEECGEIPVAFVVRRQETTLSEEDVISYVASQVAPYRKVRKVVMVNSIPKSPTGKILRKE 553
Query: 552 LRKFLTSKL 560
L++ LT+ +
Sbjct: 554 LKRILTNSV 562
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 560 | ||||||
| TAIR|locus:2117209 | 566 | AT4G19010 [Arabidopsis thalian | 0.966 | 0.955 | 0.591 | 6.4e-170 | |
| TAIR|locus:2034392 | 546 | OPCL1 "OPC-8:0 CoA ligase1" [A | 0.955 | 0.979 | 0.409 | 8.1e-108 | |
| TAIR|locus:2034423 | 565 | AT1G20480 [Arabidopsis thalian | 0.951 | 0.943 | 0.396 | 3.2e-104 | |
| TAIR|locus:2115673 | 544 | AT4G05160 [Arabidopsis thalian | 0.939 | 0.966 | 0.417 | 4.7e-103 | |
| TAIR|locus:2158559 | 562 | AT5G63380 [Arabidopsis thalian | 0.957 | 0.953 | 0.411 | 6.2e-101 | |
| TAIR|locus:2034403 | 550 | AT1G20500 [Arabidopsis thalian | 0.932 | 0.949 | 0.395 | 3.9e-99 | |
| TAIR|locus:2176662 | 550 | 4CL8 [Arabidopsis thaliana (ta | 0.960 | 0.978 | 0.379 | 3.7e-96 | |
| TAIR|locus:2017602 | 561 | 4CL1 "4-coumarate:CoA ligase 1 | 0.944 | 0.942 | 0.377 | 6.9e-86 | |
| TAIR|locus:2094771 | 570 | 4CL5 "4-coumarate:CoA ligase 5 | 0.932 | 0.915 | 0.378 | 2.4e-85 | |
| TAIR|locus:2094716 | 556 | 4CL2 "4-coumarate:CoA ligase 2 | 0.932 | 0.938 | 0.372 | 5.6e-84 |
| TAIR|locus:2117209 AT4G19010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1652 (586.6 bits), Expect = 6.4e-170, P = 6.4e-170
Identities = 325/549 (59%), Positives = 412/549 (75%)
Query: 14 NTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQL 73
N W+S +TGIY SK PS++LP D LD S +FSHKH+G TAL+DSL+G+SIS+ +L
Sbjct: 20 NPPFWFSSKTGIYTSKFPSLHLPV-DPNLDAVSALFSHKHHGDTALIDSLTGFSISHTEL 78
Query: 74 FPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIK 133
+VQS+A+G+ H G+ QGD V L+LPNS+YFP+IFL+L+ LGAIV MNP S+ EIK
Sbjct: 79 QIMVQSMAAGIYHVLGVRQGDVVSLVLPNSVYFPMIFLSLISLGAIVTTMNPSSSLGEIK 138
Query: 134 KQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSD--FHKLIAGKF 191
KQV+ C + LAFT ENV+KL S G + V++V E+ DF R + F+ ++ F
Sbjct: 139 KQVSECS--VGLAFTSTENVEKLSSLGVS-VISVSESY--DFDSIRIENPKFYSIMKESF 193
Query: 192 DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVF 251
V +P+I+Q D AAI+YSSGTTGASKG LTH N IA++ELFVRFEASQYEY S V+
Sbjct: 194 GFVPKPLIKQDDVAAIMYSSGTTGASKGVLLTHRNLIASMELFVRFEASQYEYPGSSNVY 253
Query: 252 LAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMALT 311
LA LP+ HIY M+RF+AS+++ VI+++ +THFPVVPP+LMALT
Sbjct: 254 LAALPLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPMLMALT 313
Query: 312 KAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNT 371
K AKG+CG KSLKQVSSGAAP + K IEDF+ PHVD IQGYGMTESTAVGTRGFN+
Sbjct: 314 KKAKGVCGEVFKSLKQVSSGAAPLSRKFIEDFLQTLPHVDLIQGYGMTESTAVGTRGFNS 373
Query: 372 KKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID 431
+K S+Y SVGLLAPN+QAKVVDW +G FLPPG+ GELW++GPG MK Y+NN AT +I
Sbjct: 374 EKLSRYSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPGVMKGYLNNPKATQMSIV 433
Query: 432 KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAM 491
++ WL TGDIAYFDEDGYL+IVDR+KE+IKY G+QI+PADLE VL+ HP I+D AVT A
Sbjct: 434 EDSWLRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQIAPADLEAVLVSHPLIIDAAVTAAP 493
Query: 492 DKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRE 551
++ GEIPVAFVVRR +TL+E VI Y+A +VAPY+KVR+VV SIPKS GK+LR+E
Sbjct: 494 NEECGEIPVAFVVRRQETTLSEEDVISYVASQVAPYRKVRKVVMVNSIPKSPTGKILRKE 553
Query: 552 LRKFLTSKL 560
L++ LT+ +
Sbjct: 554 LKRILTNSV 562
|
|
| TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
Identities = 225/550 (40%), Positives = 331/550 (60%)
Query: 13 INTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQ 72
+N+ + ++SK + LP N SL DV +FI S H GR A +D+ +G ++++ +
Sbjct: 4 VNSRSGFCNSNSTFYSKRTPIPLPPNPSL-DVTTFISSQAHRGRIAFIDASTGQNLTFTE 62
Query: 73 LFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEI 132
L+ V+SVA L GI +G VLLL PNSI FPV+ L+++ LGAI+ NPL + +EI
Sbjct: 63 LWRAVESVADCLSE-IGIRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLNTSNEI 121
Query: 133 KKQVTLCKTKISLAFTIYENVDKLRSWGTT-PVVAVPENLVNDFKE-GRFSDFHKLIAGK 190
KQ+ + LAFT + + K+ + P+V + E V+ + R + K
Sbjct: 122 AKQIK--DSNPVLAFTTSQLLPKISAAAKKLPIVLMDEERVDSVGDVRRLVEMMKKEPSG 179
Query: 191 FDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFV-RFEASQYEYLSSEA 249
+ ER + Q DTA +LYSSGTTG SKG +H N IA V+ V RF + E
Sbjct: 180 NRVKER--VDQDDTATLLYSSGTTGMSKGVISSHRNLIAMVQTIVNRFGSDD-----GEQ 232
Query: 250 VFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMA 309
F+ +PMFHIY + +FE EM+ I KY T P+VPPIL+A
Sbjct: 233 RFICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVA 292
Query: 310 LTKAAKGLCGN-SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRG 368
+ A + L S+ V G AP + ++ E F +P V +QGYG+TEST +G
Sbjct: 293 MVNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGAST 352
Query: 369 FNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMS 428
++ +Y + G L+ +++ ++VD V G L P TGELWL+GP MK Y +N +AT S
Sbjct: 353 DTVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYFSNEEATSS 412
Query: 429 TIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVT 488
T+D EGWL TGD+ Y DEDG++++VDRLKE+IKY GYQ++PA+LE +L+ HPEI D AV
Sbjct: 413 TLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVAPAELEALLLTHPEITDAAVI 472
Query: 489 GAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVL 548
DK +G+ P+A+VVR+ GS+L+E +++++A++VAPYK++R+V F SIPK+ +GK+L
Sbjct: 473 PFPDKEVGQFPMAYVVRKTGSSLSEKTIMEFVAKQVAPYKRIRKVAFVSSIPKNPSGKIL 532
Query: 549 RRELRKFLTS 558
R++L K TS
Sbjct: 533 RKDLIKIATS 542
|
|
| TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
Identities = 222/560 (39%), Positives = 335/560 (59%)
Query: 13 INTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQ 72
++ + T I++SK + LP N LDV SFI S H G+T VD+++G +S+P+
Sbjct: 21 VDRKSGFCESTSIFYSKREPMALPPNQ-FLDVTSFIASQPHRGKTVFVDAVTGRRLSFPE 79
Query: 73 LFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEI 132
L+ V+ VA G + G+ +G+ V++L PNSI FP++ L+++ LGAI+ NP+ + EI
Sbjct: 80 LWLGVERVA-GCLYALGVRKGNVVIILSPNSILFPIVSLSVMSLGAIITTANPINTSDEI 138
Query: 133 KKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFK--EGRFSDFHKLIAGK 190
KQ+ ++ LAFT + V KL + +P L++D+ + D KL+
Sbjct: 139 SKQIG--DSRPVLAFTTCKLVSKLAAASN---FNLPVVLMDDYHVPSQSYGDRVKLVGRL 193
Query: 191 FDLVE-RPV-------IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELF-VRFEASQ 241
++E P + Q DTAA+LYSSGTTG SKG L+H N IA V+ + RF Q
Sbjct: 194 ETMIETEPSESRVKQRVNQDDTAALLYSSGTTGTSKGVMLSHRNLIALVQAYRARFGLEQ 253
Query: 242 YEYLSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFP 301
+ +PM HI+ + +F+ +++L ++ + ++
Sbjct: 254 RT--------ICTIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVETHRSSYLS 305
Query: 302 VVPPILMALTKAAKGLCGN-SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTE 360
+VPPI++A+ A + L SL V +G AP + ++ E FV +P V +QGYG+TE
Sbjct: 306 LVPPIVVAMVNGANEINSKYDLSSLHTVVAGGAPLSREVTEKFVENYPKVKILQGYGLTE 365
Query: 361 STAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYI 420
STA+ FN ++ +Y + GLLAPN++ K+VD G L TGELW+R P MK Y
Sbjct: 366 STAIAASMFNKEETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRSPTVMKGYF 425
Query: 421 NNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHP 480
N +AT STID EGWL TGD+ Y D DG++++VDRLKE+IK NGYQ++PA+LE +L+ HP
Sbjct: 426 KNKEATASTIDSEGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQVAPAELEALLLAHP 485
Query: 481 EILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIP 540
EI D AV D G+ P+A++VR+ GS L+E+ ++ ++A++V+PYKK+R+V F SIP
Sbjct: 486 EIADAAVIPIPDMKAGQYPMAYIVRKVGSNLSESEIMGFVAKQVSPYKKIRKVTFLASIP 545
Query: 541 KSAAGKVLRRELRKFLTSKL 560
K+ +GK+LRREL K TSKL
Sbjct: 546 KNPSGKILRRELTKLTTSKL 565
|
|
| TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1021 (364.5 bits), Expect = 4.7e-103, P = 4.7e-103
Identities = 228/546 (41%), Positives = 323/546 (59%)
Query: 24 GIYHSKHPSVNLPANDSLLDVDSFIF--SHKHNGRTALVDSLSGYSISYPQLFPLVQSVA 81
GIY S P++ LP D + SF+F S + + A+ DS +G S+++ QL V +A
Sbjct: 10 GIYRSLRPTLVLP-KDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQLKSAVARLA 68
Query: 82 SGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKT 141
G H GI + D VL+ PNS FP+ FLA+ +G + NPL +V+E+ KQ+
Sbjct: 69 HGF-HRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSKQIKDSNP 127
Query: 142 KISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFS---DFHKLIAGKFDLVERPV 198
KI ++ + + DK++ + PVV + + G S F ++ + E P
Sbjct: 128 KIIIS--VNQLFDKIKGFDL-PVVLLGSKDTVEIPPGSNSKILSFDNVMELSEPVSEYPF 184
Query: 199 --IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLP 256
I+Q DTAA+LYSSGTTG SKG ELTHGNFIAA + + EY VFL LP
Sbjct: 185 VEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEY---HGVFLCFLP 241
Query: 257 MFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKG 316
MFH++ M RFE +LK I+K+ VTH VVPP+ +AL+K +
Sbjct: 242 MFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQSI- 300
Query: 317 LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSK 376
+ L SLK + SGAAP ++E+ P+V +QGYGMTE+ G + K
Sbjct: 301 VKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTETC--GIVSVEDPRLGK 358
Query: 377 YFS--VGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEG 434
S G+LAP ++A++V G PP GE+W+RGP MK Y+NN AT TIDK+
Sbjct: 359 RNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKGYLNNPQATKETIDKKS 418
Query: 435 WLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKV 494
W+HTGD+ YF+EDG LY+VDR+KE+IKY G+Q++PA+LE +L+ HP+ILD V D+
Sbjct: 419 WVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVSHPDILDAVVIPFPDEE 478
Query: 495 LGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
GE+P+AFVVR S++TE + ++A++VAPYK++RRV F +PKSAAGK+LRREL +
Sbjct: 479 AGEVPIAFVVRSPNSSITEQDIQKFIAKQVAPYKRLRRVSFISLVPKSAAGKILRRELVQ 538
Query: 555 FLTSKL 560
+ SK+
Sbjct: 539 QVRSKM 544
|
|
| TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
Identities = 231/562 (41%), Positives = 325/562 (57%)
Query: 6 QTFSSERINTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSH--KHN-----GR-- 56
+T S I+ S + TGIYHS PS++LP D L F S K + G+
Sbjct: 4 KTNDSRLIDRSSGFDQRTGIYHSLRPSLSLPPIDQPLSAAEFALSLLLKSSPPATAGKNI 63
Query: 57 ---TALVDSLSGYSISYPQLFPLVQSVASGLRHHF-GISQGDAVLLLLPNSIYFPVIFLA 112
T LV+S SG +++Y +L V+S+A LR F ++ + +L P+S+ PV++LA
Sbjct: 64 EALTYLVNSSSGDNLTYGELLRRVRSLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLA 123
Query: 113 LLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLV 172
L+ +G +V P NP+ S SE+ QV + + I AF + V KL+S + P+ V +
Sbjct: 124 LMSIGVVVSPANPIGSESEVSHQVEVSEPVI--AFATSQTVKKLQS-SSLPLGTVLMDST 180
Query: 173 NDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVE 232
SD + F + + Q D AAIL+SSGTTG KG LTH N IA+
Sbjct: 181 EFLSWLNRSDSSSV--NPFQVQ----VNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTA 234
Query: 233 LFVRFEASQYEYLSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVI 292
V + + + ++ + V L LP+FH++ + RFE M K +
Sbjct: 235 --VSHQRTLQDPVNYDRVGLFSLPLFHVFGFMMMIRAISLGETLVL-LGRFELEAMFKAV 291
Query: 293 DKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDF 352
+KY VT PV PP+++AL K+ L+SL+ + G AP I E F FP VD
Sbjct: 292 EKYKVTGMPVSPPLIVALVKSELTK-KYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDI 350
Query: 353 IQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG 412
+QGYG+TES+ F ++ KY SVG ++ N++AK+VD G LPPG TGELWLRG
Sbjct: 351 VQGYGLTESSGPAASTFGPEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRG 410
Query: 413 PGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADL 472
P MK Y+ N A+ T+DKEGWL TGD+ YFD + +LYIVDRLKE+IKY YQ+ P +L
Sbjct: 411 PVIMKGYVGNEKASAETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQVPPVEL 470
Query: 473 ETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRR 532
E +L +P+++D AV D+ GEIP+AF+VR+ GS L EA +ID++A++V PYKKVRR
Sbjct: 471 EQILHSNPDVIDAAVVPFPDEDAGEIPMAFIVRKPGSNLNEAQIIDFVAKQVTPYKKVRR 530
Query: 533 VVFTKSIPKSAAGKVLRRELRK 554
V F +IPK+ AGK+LRREL K
Sbjct: 531 VAFINAIPKNPAGKILRRELTK 552
|
|
| TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
Identities = 214/541 (39%), Positives = 313/541 (57%)
Query: 26 YHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLR 85
++SK ++LP N S DV +FI S H G+TA +D+ +G +++ L+ V VA L
Sbjct: 23 FYSKRQPLSLPPNLSR-DVTTFISSQPHRGKTAFIDAATGQCLTFSDLWRAVDRVADCLY 81
Query: 86 HHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISL 145
H GI +GD VL+L PNSI+ PV+ L+++ LGA+ N L + EI KQ+ + +L
Sbjct: 82 HEVGIRRGDVVLILSPNSIFIPVVCLSVMSLGAVFTTANTLNTSGEISKQIA--DSNPTL 139
Query: 146 AFTIYENVDKLRSWGTTPVVAVPENLVNDFKE-----GRFSDFHKLIAGKFDLVERPVIR 200
FT + KL VV + + + G S+ K + +R +
Sbjct: 140 VFTTRQLAPKLPV--AISVVLTDDEVYQELTSAIRVVGILSEMVKKEPSGQRVRDR--VN 195
Query: 201 QQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHI 260
Q DTA +LYSSGTTG SKG +H N A V F+ + L + +F+ +PMFH
Sbjct: 196 QDDTAMMLYSSGTTGPSKGVISSHRNLTAHVARFIS------DNLKRDDIFICTVPMFHT 249
Query: 261 YXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGN 320
Y +RRF+ +M+ ++K+ T + PP+L+A+ A +
Sbjct: 250 YGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVLVAMINDADLIKAK 309
Query: 321 -SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFS 379
L SLK V G AP + ++ E F+ +P VD +QGY +TES G + ++ +Y +
Sbjct: 310 YDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQGYALTESNGGGAFTNSAEESRRYGT 369
Query: 380 VGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTG 439
G L +++A++VD G F+ TGELWL+GP K Y N +AT TI+ EGWL TG
Sbjct: 370 AGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKGYFKNQEATNETINLEGWLKTG 429
Query: 440 DIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIP 499
D+ Y DEDG+L++VDRLKE+IKY GYQ+ PA+LE +LI HP+ILD AV DK G+ P
Sbjct: 430 DLCYIDEDGFLFVVDRLKELIKYKGYQVPPAELEALLITHPDILDAAVIPFPDKEAGQYP 489
Query: 500 VAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559
+A+VVR+ S L+E VID+++++VAPYKK+R+V F SIPK+A+GK LR++L K TSK
Sbjct: 490 MAYVVRKHESNLSEKQVIDFISKQVAPYKKIRKVSFINSIPKTASGKTLRKDLIKLATSK 549
Query: 560 L 560
L
Sbjct: 550 L 550
|
|
| TAIR|locus:2176662 4CL8 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
Identities = 212/558 (37%), Positives = 320/558 (57%)
Query: 9 SSERINTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSI 68
SS I+ + ++SK + LP+ +SL D+ +FI S + G+TA +D+ + + I
Sbjct: 7 SSSLIDPRNGFCTSNSTFYSKRKPLALPSKESL-DITTFISSQTYRGKTAFIDAATDHRI 65
Query: 69 SYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLS 128
S+ L+ V VA L H GI +GD VL+L PN+I P++ L+++ LGA++ NPL +
Sbjct: 66 SFSDLWMAVDRVADCLLHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVLTTANPLNT 125
Query: 129 VSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVN---DFKE-GRFSDFH 184
SEI +Q+ K LAFT E K+ S G + V+ E+ + K G ++
Sbjct: 126 ASEILRQIADSNPK--LAFTTPELAPKIASSGISIVLERVEDTLRVPRGLKVVGNLTEMM 183
Query: 185 KLI-AGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYE 243
K +G+ R + + DTA +LYSSGTTG SKG +HGN IA V R+ A +E
Sbjct: 184 KKEPSGQ---AVRNQVHKDDTAMLLYSSGTTGRSKGVNSSHGNLIAHV---ARYIAEPFE 237
Query: 244 YLSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVV 303
+ F+ +P+FH + + RF+ EM+ ++KY T +V
Sbjct: 238 --QPQQTFICTVPLFHTFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILV 295
Query: 304 PPILMAL-TKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTEST 362
PP+L+ + KA + + + L+ V G AP + ++ + F+ +P VD QGY +TES
Sbjct: 296 PPVLVTMINKADQIMKKYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQGYALTESN 355
Query: 363 AVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINN 422
G + ++ +Y +VGLL+ ++A++VD G + TGELWL+GP K Y N
Sbjct: 356 GAGASIESVEESRRYGAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSIAKGYFRN 415
Query: 423 ADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEI 482
+ I EGWL TGD+ Y D DG+L+IVDRLKE+IKY GYQ+ PA+LE +L+ HP+I
Sbjct: 416 EE---EIITSEGWLKTGDLCYIDNDGFLFIVDRLKELIKYKGYQVPPAELEALLLNHPDI 472
Query: 483 LDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKS 542
LD AV DK G+ P+A+V R+ S L E VID+++++VAPYKK+R+V F SIPK+
Sbjct: 473 LDAAVIPFPDKEAGQFPMAYVARKPESNLCEKKVIDFISKQVAPYKKIRKVAFIDSIPKT 532
Query: 543 AAGKVLRRELRKFLTSKL 560
+GK LR++L KF SK+
Sbjct: 533 PSGKTLRKDLIKFAISKI 550
|
|
| TAIR|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
Identities = 206/545 (37%), Positives = 306/545 (56%)
Query: 25 IYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRT--ALVDSLSGYSISYPQLFPLVQSVAS 82
I+ SK P + +P + SL D +IF + T L++ +G+ +Y + + + +A+
Sbjct: 24 IFRSKLPDIYIPNHLSLHD---YIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAA 80
Query: 83 GLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTK 142
H G++Q D V+LLLPN F + FLA + GA NP + +EI KQ TK
Sbjct: 81 NF-HKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTK 139
Query: 143 ISLAFTIY-ENVDKLRSWGTTPVVAVPENLVNDFKEG--RFSDFHKLIAGKFDLVERPVI 199
+ + Y + + L++ +V + +N EG RF++ + ++++ I
Sbjct: 140 LIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEI 199
Query: 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFH 259
D A+ YSSGTTG KG LTH + +V V E Y S+ V L VLPMFH
Sbjct: 200 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL-YFHSDDVILCVLPMFH 258
Query: 260 IYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCG 319
IY M +FE + +L++I + VT P+VPPI++A+ K+++
Sbjct: 259 IYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE-K 317
Query: 320 NSLKSLKQVSSGAAPANSKIIEDFVGA-FPHVDFIQGYGMTESTAV--GTRGFNTKKFS- 375
L S++ V SGAAP K +ED V A FP+ QGYGMTE+ V + GF + F
Sbjct: 318 YDLSSIRVVKSGAAPLG-KELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPV 376
Query: 376 KYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGW 435
K + G + N + K+VD G L GE+ +RG MK Y+NN AT TIDK+GW
Sbjct: 377 KSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGW 436
Query: 436 LHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVL 495
LHTGDI D+D L+IVDRLKE+IKY G+Q++PA+LE +LI HP+I DVAV ++
Sbjct: 437 LHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAA 496
Query: 496 GEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555
GE+PVAFVV+ S L+E V +++++V YK++ +V FT+SIPK+ +GK+LR++LR
Sbjct: 497 GEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAK 556
Query: 556 LTSKL 560
L + L
Sbjct: 557 LANGL 561
|
|
| TAIR|locus:2094771 4CL5 "4-coumarate:CoA ligase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 205/541 (37%), Positives = 308/541 (56%)
Query: 25 IYHSKHPSVNLPANDSLLDVDSFIFSHKHNG---RTALVDSLSGYSISYPQLFPLVQSVA 81
I+ SK P + +P + L D FS +G T ++D +G ++Y + ++ +A
Sbjct: 28 IFRSKLPDIFIPNHLPLTDYVFQRFSGDGDGDSSTTCIIDGATGRILTYADVQTNMRRIA 87
Query: 82 SGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKT 141
+G+ H GI GD V+LLLPNS F + FLA+ YLGA+ NP + EI KQ
Sbjct: 88 AGI-HRLGIRHGDVVMLLLPNSPEFALSFLAVAYLGAVSTTANPFYTQPEIAKQAKASAA 146
Query: 142 KISLAFT-IYENVDKLRSWGTTPVVAVPEN----LVNDFKEGRFSDFHKLI-AGKFDLVE 195
K+ + + + + L++ G +V + ++ +V+ +G S F +L A + +L+
Sbjct: 147 KMIITKKCLVDKLTNLKNDGVL-IVCLDDDGDNGVVSSSDDGCVS-FTELTQADETELL- 203
Query: 196 RPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVL 255
+P I +DT A+ YSSGTTG KG +TH + ++ V E + +++ V L L
Sbjct: 204 KPKISPEDTVAMPYSSGTTGLPKGVMITHKGLVTSIAQKVDGENPNLNFTAND-VILCFL 262
Query: 256 PMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAK 315
PMFHIY + RFE + ++++I +Y VT PV PP+++A K+ +
Sbjct: 263 PMFHIYALDALMLSAMRTGAALLIVPRFELNLVMELIQRYKVTVVPVAPPVVLAFIKSPE 322
Query: 316 GLCGNSLKSLKQVSSGAAPANSKIIEDFVGA-FPHVDFIQGYGMTES-TAVGTRGFNTKK 373
L S++ + SGAA K +ED V FP+ F QGYGMTES T + F
Sbjct: 323 TE-RYDLSSVRIMLSGAATLK-KELEDAVRLKFPNAIFGQGYGMTESGTVAKSLAFAKNP 380
Query: 374 F-SKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDK 432
F +K + G + N + KVVD G LP +GE+ +RG MK Y+N+ +AT TIDK
Sbjct: 381 FKTKSGACGTVIRNAEMKVVDTETGISLPRNKSGEICVRGHQLMKGYLNDPEATARTIDK 440
Query: 433 EGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMD 492
+GWLHTGDI + D+D ++IVDRLKE+IK+ GYQ++PA+LE +LI HP I D AV D
Sbjct: 441 DGWLHTGDIGFVDDDDEIFIVDRLKELIKFKGYQVAPAELEALLISHPSIDDAAVVAMKD 500
Query: 493 KVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
+V E+PVAFV R GS LTE V Y+ ++V YK+++ V F + IPK+ +GK+LR++L
Sbjct: 501 EVADEVPVAFVARSQGSQLTEDDVKSYVNKQVVHYKRIKMVFFIEVIPKAVSGKILRKDL 560
Query: 553 R 553
R
Sbjct: 561 R 561
|
|
| TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 204/547 (37%), Positives = 310/547 (56%)
Query: 25 IYHSKHPSVNLPANDSLLDVDSFIFSH--KHNGRTALVDSLSGYSISYPQLFPLVQSVAS 82
I+ S+ P + +P + L + +IF + + + L++ +G +Y + + +A+
Sbjct: 22 IFRSRLPDIYIPNH---LPLHDYIFENISEFAAKPCLINGPTGEVYTYADVHVTSRKLAA 78
Query: 83 GLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTK 142
GL H+ G+ Q D V++LLPNS + FLA ++GAI NP + +EI KQ K
Sbjct: 79 GL-HNLGVKQHDVVMILLPNSPEVVLTFLAASFIGAITTSANPFFTPAEISKQAKASAAK 137
Query: 143 ISLAFTIY-ENVDKLRSWG----TTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERP 197
+ + + Y + + L++ G TT A+PEN + RFS+ + + D +
Sbjct: 138 LIVTQSRYVDKIKNLQNDGVLIVTTDSDAIPENCL------RFSELTQSEEPRVDSIPEK 191
Query: 198 VIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPM 257
I +D A+ +SSGTTG KG LTH + +V V E Y + + V L VLPM
Sbjct: 192 -ISPEDVVALPFSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL-YFNRDDVILCVLPM 249
Query: 258 FHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGL 317
FHIY M +FE + +L+ I + VT VVPPI++A+ K+ +
Sbjct: 250 FHIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIVLAIAKSPETE 309
Query: 318 CGNSLKSLKQVSSGAAPANSKIIEDFVGA-FPHVDFIQGYGMTESTAV--GTRGFNTKKF 374
L S++ V SGAAP K +ED + A FP+ QGYGMTE+ V + GF + F
Sbjct: 310 -KYDLSSVRMVKSGAAPLG-KELEDAISAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPF 367
Query: 375 S-KYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKE 433
K + G + N + K++D G LP GE+ +RG MK Y+N+ AT STIDK+
Sbjct: 368 PVKSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQIMKGYLNDPLATASTIDKD 427
Query: 434 GWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDK 493
GWLHTGD+ + D+D L+IVDRLKE+IKY G+Q++PA+LE++LI HPEI DVAV ++
Sbjct: 428 GWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQVAPAELESLLIGHPEINDVAVVAMKEE 487
Query: 494 VLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
GE+PVAFVVR S ++E + +++++V YK++ +V FT SIPK+ +GK+LR++LR
Sbjct: 488 DAGEVPVAFVVRSKDSNISEDEIKQFVSKQVVFYKRINKVFFTDSIPKAPSGKILRKDLR 547
Query: 554 KFLTSKL 560
L + L
Sbjct: 548 ARLANGL 554
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q54P77 | 4CL1_DICDI | 6, ., 2, ., 1, ., 1, 2 | 0.3405 | 0.925 | 0.9401 | yes | no |
| P94547 | LCFA_BACSU | 6, ., 2, ., 1, ., 3 | 0.3061 | 0.8107 | 0.8107 | yes | no |
| Q10S72 | 4CLL4_ORYSJ | 6, ., 2, ., 1, ., - | 0.4358 | 0.9625 | 0.9764 | yes | no |
| Q84P24 | 4CLL6_ARATH | 6, ., 2, ., 1, ., - | 0.6156 | 0.9660 | 0.9558 | yes | no |
| Q336M7 | 4CLL2_ORYSJ | 6, ., 2, ., 1, ., - | 0.5393 | 0.8285 | 0.7958 | yes | no |
| Q6YYZ2 | 4CLL3_ORYSJ | 6, ., 2, ., 1, ., - | 0.5309 | 0.9642 | 0.9137 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| ACLL18 | acyl-coa ligase (EC-6.2.1.12) (544 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| PAL | RecName- Full=Phenylalanine ammonia-lyase; EC=4.3.1.24;; This is a key enzyme of plant metaboli [...] (715 aa) | • | 0.681 | ||||||||
| PAL2 | SubName- Full=Phenylalanine ammonia-lyase; (712 aa) | • | 0.681 | ||||||||
| PAL3 | SubName- Full=Phenylalanine ammonia-lyase; (715 aa) | • | 0.681 | ||||||||
| PAL5 | SubName- Full=Phenylalanine ammonia-lyase; (712 aa) | • | 0.647 | ||||||||
| CCR5 | cinnamoyl CoA reductase (EC-1.2.1.44) (230 aa) | • | 0.510 | ||||||||
| f5h | SubName- Full=Ferulate-5-hydroxylase; Flags- Precursor; (501 aa) | • | 0.510 | ||||||||
| CCR1 | cinnamoyl CoA reductase (EC-1.2.1.44) (278 aa) | • | 0.510 | ||||||||
| CHI1 | SubName- Full=Putative uncharacterized protein; (224 aa) | • | 0.510 | ||||||||
| CHS | SubName- Full=Chalcone synthase (Putative uncharacterized protein);; The primary product of thi [...] (397 aa) | • | 0.508 | ||||||||
| CCR | SubName- Full=Cinnamoyl CoA reductase; (339 aa) | • | 0.508 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 560 | |||
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 0.0 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 0.0 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-155 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 1e-149 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 1e-138 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 1e-135 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 1e-114 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 1e-111 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 1e-111 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 1e-109 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 1e-105 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 1e-101 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 1e-99 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 2e-99 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 1e-93 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 7e-88 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 5e-87 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 1e-85 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 5e-82 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-81 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-78 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 6e-77 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 4e-76 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 6e-76 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-75 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 5e-75 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 7e-75 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 3e-74 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 2e-71 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 1e-70 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 2e-66 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 3e-66 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 5e-66 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 8e-66 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 1e-65 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 3e-65 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 6e-64 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 2e-63 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 2e-62 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 1e-61 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 2e-61 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 3e-61 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 2e-60 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 3e-59 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 5e-59 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 1e-58 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 1e-58 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 5e-58 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 1e-57 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 4e-57 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 7e-57 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 9e-56 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 1e-54 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 7e-54 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 2e-53 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 3e-53 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 8e-53 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 3e-52 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 4e-52 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 4e-52 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 1e-51 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 4e-51 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 6e-51 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 1e-50 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 4e-50 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 1e-49 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 8e-49 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 6e-48 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 3e-47 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 5e-47 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 6e-47 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 9e-47 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 1e-46 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 5e-46 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 6e-46 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 1e-45 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 1e-45 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 4e-43 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 4e-43 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 5e-41 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 2e-40 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 3e-40 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 5e-40 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 1e-39 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 3e-39 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 4e-39 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 6e-39 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 1e-38 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 4e-38 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 6e-38 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 9e-38 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 1e-37 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 3e-37 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 3e-37 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 4e-37 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 7e-37 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 1e-36 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 8e-36 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 8e-35 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 1e-34 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 1e-34 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 1e-34 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 7e-34 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 9e-34 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 4e-33 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 1e-32 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 1e-32 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 2e-32 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 4e-32 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 8e-31 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 2e-30 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 2e-30 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 3e-30 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 5e-29 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 2e-28 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 5e-28 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 2e-26 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 8e-26 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 8e-25 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 1e-24 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 7e-24 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 2e-23 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 7e-23 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 1e-22 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 3e-22 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 4e-22 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 5e-22 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 2e-21 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 1e-20 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 3e-20 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 4e-20 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 4e-20 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 7e-20 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 7e-20 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 1e-19 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 1e-19 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 7e-19 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 1e-18 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 2e-18 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 9e-18 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 3e-17 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 5e-17 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-17 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 6e-17 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 4e-16 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 4e-16 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 5e-16 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 1e-15 | |
| PRK08308 | 414 | PRK08308, PRK08308, acyl-CoA synthetase; Validated | 2e-15 | |
| PRK12476 | 612 | PRK12476, PRK12476, putative fatty-acid--CoA ligas | 2e-15 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 4e-15 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 4e-15 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 6e-15 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 2e-14 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 2e-14 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 4e-14 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 1e-13 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 4e-13 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 9e-13 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-12 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 9e-11 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 2e-10 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 4e-10 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 6e-10 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-08 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 3e-08 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 4e-08 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-07 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 2e-07 | |
| pfam13193 | 43 | pfam13193, DUF4009, Domain of unknown function (DU | 2e-07 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 3e-07 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 6e-07 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 7e-07 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 2e-06 | |
| cd05905 | 556 | cd05905, Dip2, Disco-interacting protein 2 (Dip2) | 9e-06 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 2e-05 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 5e-05 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 6e-05 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 3e-04 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 4e-04 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 5e-04 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 0.001 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 0.001 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 0.002 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 0.002 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 0.004 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 854 bits (2207), Expect = 0.0
Identities = 382/545 (70%), Positives = 438/545 (80%), Gaps = 5/545 (0%)
Query: 14 NTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFS-HKHNGRTALVDSLSGYSISYPQ 72
N WYSPETGIY SKHP V LP+ D LD SFIFS H HNG TAL+DS +G+SISY +
Sbjct: 13 NPPFWYSPETGIYSSKHPPVPLPS-DPNLDAVSFIFSHHNHNGDTALIDSSTGFSISYSE 71
Query: 73 LFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEI 132
L PLV+S+A+GL H G+ QGD VLLLLPNS+YFPVIFLA+L LG IV MNP S+ EI
Sbjct: 72 LQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEI 131
Query: 133 KKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFD 192
KK+V C + LAFT ENV+KL G PV+ VPEN D K F F++LI FD
Sbjct: 132 KKRVVDCS--VGLAFTSPENVEKLSPLGV-PVIGVPENYDFDSKRIEFPKFYELIKEDFD 188
Query: 193 LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFL 252
V +PVI+Q D AAI+YSSGTTGASKG LTH N IA VELFVRFEASQYEY S+ V+L
Sbjct: 189 FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYL 248
Query: 253 AVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTK 312
A LPMFHIYGLSLF +GLLSLG ++VVMRRF+AS+M+KVID++ VTHFPVVPPILMALTK
Sbjct: 249 AALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTK 308
Query: 313 AAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTK 372
AKG+CG LKSLKQVS GAAP + K I+DFV PHVDFIQGYGMTESTAVGTRGFNT+
Sbjct: 309 KAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTE 368
Query: 373 KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDK 432
K SKY SVGLLAPN+QAKVVDW GC LPPG+ GELW++GPG MK Y+NN AT STIDK
Sbjct: 369 KLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDK 428
Query: 433 EGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMD 492
+GWL TGDIAYFDEDGYLYIVDRLKE+IKY G+QI+PADLE VLI HPEI+D AVT D
Sbjct: 429 DGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPD 488
Query: 493 KVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
K GEIPVAFVVRR GSTL++ AVI+Y+A++VAPYKKVR+VVF +SIPKS AGK+LRREL
Sbjct: 489 KECGEIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRREL 548
Query: 553 RKFLT 557
++ LT
Sbjct: 549 KRSLT 553
|
Length = 560 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 688 bits (1779), Expect = 0.0
Identities = 258/517 (49%), Positives = 330/517 (63%), Gaps = 13/517 (2%)
Query: 36 PANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDA 95
D LD S +F+ + R AL+D+ +G +++Y +L LV+ +A+GL G +GD
Sbjct: 1 IPKDLSLDSASLLFASEFGDRPALIDAATGRALTYAELERLVRRLAAGLAARGGR-KGDV 59
Query: 96 VLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDK 155
VLLL PNS+ FPV+FLA+L GA+V NPL + +EI KQV K LA T E +K
Sbjct: 60 VLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAK--LAITTSELAEK 117
Query: 156 LRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTG 215
L S PVV + + + L+ VI+Q D AA+ YSSGTTG
Sbjct: 118 LASLALEPVVLLDS------ADDGSAAIDDLLFADEPEPPVVVIKQDDVAALPYSSGTTG 171
Query: 216 ASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGP 275
SKG LTH N IA V V E ++ E V L VLPMFHIYGL++ L LL LG
Sbjct: 172 RSKGVMLTHRNLIANVAQLVAGEGPNFDR---EDVTLCVLPMFHIYGLTVILLALLRLGA 228
Query: 276 SVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPA 335
+VVVM RF+ + L I+KY VTH PVVPPI++AL K L SLKQ+ SGAAP
Sbjct: 229 TVVVMPRFDLEKFLAAIEKYKVTHLPVVPPIVLALVKHPIVD-KYDLSSLKQIGSGAAPL 287
Query: 336 NSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWV 395
++ E F FP V+ QGYGMTES+ V T +K K SVG L PN++AK+VD
Sbjct: 288 GKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVEAKIVDPE 347
Query: 396 NGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDR 455
G LPP GELW+RGP MK Y+NN +AT TIDK+GWLHTGD+ YFDEDGYL+IVDR
Sbjct: 348 TGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIVDR 407
Query: 456 LKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAA 515
LKE+IKY G+Q++PA+LE +L+ HPEI D AV D+ GEIP+AFVVR+ GS L+E
Sbjct: 408 LKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVRQPGSELSEDE 467
Query: 516 VIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
V+ ++A++VAPYKKVR+VVF +IPKS +GK+LRREL
Sbjct: 468 VMQFVAKQVAPYKKVRKVVFVDAIPKSPSGKILRREL 504
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 452 bits (1165), Expect = e-155
Identities = 208/496 (41%), Positives = 286/496 (57%), Gaps = 14/496 (2%)
Query: 58 ALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117
AL+D+ +G +++ L +A GLR G+ QGD V L+ PNSI FP +FL L G
Sbjct: 1 ALIDADTGTELTFADLLKKALRLAKGLRKL-GLKQGDVVALISPNSIEFPPVFLGCLAAG 59
Query: 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRS----WGTTPVVAVPENLVN 173
IV NP + E+ Q+ + K K+ F + +DK++ G + V ++ +
Sbjct: 60 GIVSAANPSYTPDELAHQLKISKPKL--IFCDPDELDKVKEAAKELGPVVRIIVLDSAPD 117
Query: 174 DFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVEL 233
+L A + + DTAA+LYSSGTTG KG L+H N IA +
Sbjct: 118 GVLRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQ 177
Query: 234 FVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVID 293
+ SS V L LP +H YGL+ LL G +V++M +F++ LK+I+
Sbjct: 178 VQDTLKGNPD--SSNDVVLTFLPFYHAYGLTTTLASLL-CGATVIIMPKFDSETFLKLIE 234
Query: 294 KYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFI 353
KY VT +VPPI +AL K+ + L SL+ + SGAAP + ++ E+ FP+
Sbjct: 235 KYKVTSLFLVPPIAVALAKSPL-VDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIK 293
Query: 354 QGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP 413
QGYGMTE+ T K SVG L PN++AK+VD G L P GEL ++GP
Sbjct: 294 QGYGMTETGPATT--LTPPGDEKPGSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKGP 351
Query: 414 GTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLE 473
MK Y+NN +AT TID++GWLHTGDI YFDEDG YIVDR KE+IKY GYQ+ PA+LE
Sbjct: 352 QIMKGYLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPPAELE 411
Query: 474 TVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVR-R 532
VL+ HP++ D AV G D+V GE+P A+VV + GS LTE V DY+A++VA YK++R
Sbjct: 412 AVLLEHPKVADAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEVKDYVAKKVAKYKQLRGG 471
Query: 533 VVFTKSIPKSAAGKVL 548
VVF IPKS +GK+L
Sbjct: 472 VVFVDEIPKSPSGKIL 487
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 439 bits (1130), Expect = e-149
Identities = 219/543 (40%), Positives = 309/543 (56%), Gaps = 18/543 (3%)
Query: 20 SPETGIYHSKHPSVNLPANDSLLDVDSFIFSH--KHNGRTALVDSLSGYSISYPQLFPLV 77
+ E I+ SK P + +P + L D + F + + R L+D +G +Y + L
Sbjct: 4 ASEEFIFRSKLPDIYIPNHLPLHD---YCFERLSEFSDRPCLIDGATGRVYTYADVELLS 60
Query: 78 QSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVT 137
+ VA+GL H GI QGD V+LLLPN F + FL GA+ NP + +EI KQ
Sbjct: 61 RRVAAGL-HKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAK 119
Query: 138 LCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERP 197
K+ + + Y VDKL+ V V ++D EG F +L + +
Sbjct: 120 ASGAKLIITQSCY--VDKLKGLAEDDGVTVV--TIDDPPEGCLH-FSELTQADENELPEV 174
Query: 198 VIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPM 257
I D A+ YSSGTTG KG LTH + +V V E Y S+ V L VLPM
Sbjct: 175 EISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL-YFHSDDVILCVLPM 233
Query: 258 FHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGL 317
FHIY L+ L L +G ++++M +FE +L++I ++ VT P VPPI++A+ K+ +
Sbjct: 234 FHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPV-V 292
Query: 318 CGNSLKSLKQVSSGAAPANSKIIEDFVGA-FPHVDFIQGYGMTESTAVGTR--GFNTKKF 374
L S++ V SGAAP K +ED A P+ QGYGMTE+ V F + F
Sbjct: 293 EKYDLSSIRMVLSGAAPL-GKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPF 351
Query: 375 S-KYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKE 433
K S G + N + K+VD G LP GE+ +RGP MK Y+N+ +AT +TIDK+
Sbjct: 352 PVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKD 411
Query: 434 GWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDK 493
GWLHTGDI Y D+D L+IVDRLKE+IKY G+Q++PA+LE +LI HP I D AV D+
Sbjct: 412 GWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDE 471
Query: 494 VLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
V GE+PVAFVVR +GS +TE + ++A++V YK++ +V F SIPK+ +GK+LR++LR
Sbjct: 472 VAGEVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLR 531
Query: 554 KFL 556
L
Sbjct: 532 AKL 534
|
Length = 537 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 411 bits (1058), Expect = e-138
Identities = 174/508 (34%), Positives = 265/508 (52%), Gaps = 12/508 (2%)
Query: 52 KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
++ R AL+ G ++Y +L +A+ L+ G+ GD V +LLPNS F + FL
Sbjct: 23 RNPDRPALIFLGRGGRLTYRELDRRANRLAAALQAL-GVKPGDRVAILLPNSPEFLIAFL 81
Query: 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISL-AFTIYENVDKLRSWGTTPVVAVPEN 170
A L GA+ +P+NP L+ E+ + K+ + + ++ + +V +
Sbjct: 82 AALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVG 141
Query: 171 LVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAA 230
+D G + + D A +LY+SGTTG KG LTH N +A
Sbjct: 142 DADDRLPITLEALAA--EGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLAN 199
Query: 231 VELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMR--RFEASEM 288
A+ L+ + V L+ LP+FHI+GL + L L G ++V++ F+ E+
Sbjct: 200 AAGI---AAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEV 256
Query: 289 LKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP 348
L +I+KY VT VP L L + + SL+ V SG AP +++E F F
Sbjct: 257 LWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFG 316
Query: 349 HVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGEL 408
+ ++GYG+TE++ V T +K SVG P ++ ++VD +G + PG GE+
Sbjct: 317 PIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVD-PDGGEVLPGEVGEI 375
Query: 409 WLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQIS 468
W+RGP MK Y N +AT D++GWL TGD+ Y DEDGYLYIV RLK++I G I
Sbjct: 376 WVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIY 435
Query: 469 PADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDG--STLTEAAVIDYLAQRVAP 526
P ++E VL HP + + AV G D+ GE VA VV + G + LT + +L +R+A
Sbjct: 436 PEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLAL 495
Query: 527 YKKVRRVVFTKSIPKSAAGKVLRRELRK 554
YK R VVF +P++A+GK+ RR LR+
Sbjct: 496 YKVPRIVVFVDELPRTASGKIDRRALRE 523
|
Length = 534 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 401 bits (1034), Expect = e-135
Identities = 180/503 (35%), Positives = 257/503 (51%), Gaps = 46/503 (9%)
Query: 52 KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
+ R AL + G ++Y +L L A+ L+ G+ +GD V L+LPN FP+ +
Sbjct: 11 RFPDRPAL--TFFGRKLTYAELDELSDRFAAYLQQL-GVKKGDRVALMLPNCPQFPIAYF 67
Query: 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENL 171
+L GA+V+P+NPL + E++ Q+ K +VA+
Sbjct: 68 GILKAGAVVVPVNPLYTPRELEHQLNDSGAK-------------------VLIVAIS--- 105
Query: 172 VNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAV 231
F +A L + D A + Y+ GTTG KGA LTH N +A V
Sbjct: 106 -----------FEDALASGAPLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANV 154
Query: 232 ELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKV 291
+ + A + E FL LP+FHI+GL++ L L LG + V++ F +LK
Sbjct: 155 Q---QIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKE 211
Query: 292 IDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVD 351
I +Y T FP VP + AL + + SL+ SG AP ++ E F
Sbjct: 212 IKRYRFTIFPGVPTLYNALLNHPEFKKYD-FSSLRLCISGGAPLPVEVAERFEEKT-GAP 269
Query: 352 FIQGYGMTESTAVGTRGFNTKKFSKYF-SVGLLAPNIQAKVVDWVNGCFLPPGSTGELWL 410
++GYG+TE++ V T N + S+GL P + K+VD G LPPG GEL +
Sbjct: 270 LVEGYGLTETSPVTT--VNPLDGERKPGSIGLPLPGTEVKIVD-DEGNELPPGEVGELVV 326
Query: 411 RGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPA 470
RGP MK Y N + T + +GWL TGDI Y DEDGY YIVDR K++I G+ + P
Sbjct: 327 RGPQVMKGYWNRPEETAEVLT-DGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPR 385
Query: 471 DLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKV 530
++E VL HP +L+ AV G D GE AFVV ++G++LTE +I + +R+A YK
Sbjct: 386 EIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVLKEGASLTEEELIAFCRERLAAYKVP 445
Query: 531 RRVVFTKSIPKSAAGKVLRRELR 553
R+V F +PKSA GK+LRRELR
Sbjct: 446 RQVEFRDELPKSAVGKILRRELR 468
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 343 bits (882), Expect = e-114
Identities = 134/352 (38%), Positives = 199/352 (56%), Gaps = 8/352 (2%)
Query: 203 DTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYG 262
D A I Y+SGTTG KGA LTH N + R L+ L +P+FH++G
Sbjct: 3 DPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLG-----LTEGDRTLVPVPLFHVFG 57
Query: 263 LSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSL 322
L L L L+ G ++V+M +F+ L++I++ +T VP + +AL + L
Sbjct: 58 LVLGVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPD-FDKFDL 116
Query: 323 KSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYF-SVG 381
SL+ SG AP +++ FP + GYGMTE++ VGT+ + +VG
Sbjct: 117 SSLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVG 176
Query: 382 LLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDI 441
P ++ K+VD +G +PPG GE+ +RG MK Y N+ +AT ID +GWLHTGD+
Sbjct: 177 RPLPGVEVKIVD-PDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDL 235
Query: 442 AYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVA 501
Y DEDGYL IV R+K++I G I PA++E L+ HP + + AV G D+ LGE+ A
Sbjct: 236 GYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVAA 295
Query: 502 FVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
FVV + G+TLTE +I + R+A +K R V F +P++A+GK+ + +LR
Sbjct: 296 FVVLKPGATLTEEELIAFCRGRLARFKVPRYVRFVDELPRTASGKIQKFKLR 347
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 335 bits (861), Expect = e-111
Identities = 143/357 (40%), Positives = 203/357 (56%), Gaps = 22/357 (6%)
Query: 203 DTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYG 262
D A ILY+SGTTG KG LTH N +A A LS V+L P++H
Sbjct: 2 DPALILYTSGTTGRPKGVMLTHRNLLANA-----VNALAGVDLSPGDVYLLAAPLYHA-A 55
Query: 263 LSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPI---LMALTKAAKGLCG 319
LF L L+ G +VV+M +F+ +L +I+++ VTH +VP + L+ L A+
Sbjct: 56 GGLFLLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARY--- 112
Query: 320 NSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGT---RGFNTKKFSK 376
L SL+ + GAAP +++ + + F+QGYGMTE+ T +K
Sbjct: 113 -DLSSLRLIIYGAAPMPAELKRAMI-EWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLG- 169
Query: 377 YFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWL 436
SVG P ++ ++VD +G LPPG GE+ +RGP M Y N +AT + ++GWL
Sbjct: 170 --SVGRPVPGVEVRIVD-EDGRELPPGEVGEIVVRGPAVMAGYWNRPEATAEAL-RDGWL 225
Query: 437 HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLG 496
HTGD+ Y DEDGYLYIVDR K++I G I PA++E VL+ HP + DVAV G D+ G
Sbjct: 226 HTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWG 285
Query: 497 EIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
E VA VV R G+TL +I + +R+A YK + V F +P++A+GK+L+RELR
Sbjct: 286 EAVVAVVVLRPGATLDAEELIAFCRERLAGYKVPKSVEFVDELPRNASGKILKRELR 342
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 340 bits (874), Expect = e-111
Identities = 158/517 (30%), Positives = 248/517 (47%), Gaps = 33/517 (6%)
Query: 51 HKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIF 110
+ + A V ++Y +L V+ A+ L GI +GD V + PNS ++ +
Sbjct: 16 RRFGDKEAYVFG--DQRLTYAELNARVRRAAAALAAL-GIGKGDRVAIWAPNSPHWVIAA 72
Query: 111 LALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAF-----TIYENVDKLRSWGTTPVV 165
L L GA+V+P+N + E + K Y +L + +
Sbjct: 73 LGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVIC 132
Query: 166 AVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHG 225
E+ + K F+DF L AG V D A IL++SGTTG KGA LTH
Sbjct: 133 ETEEDDPHTEKMKTFTDF--LAAGDPAERAPEV-DPDDVADILFTSGTTGRPKGAMLTHR 189
Query: 226 NFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEA 285
++ + Y L+ +LA P FH++G L G +++ + F+
Sbjct: 190 QLLSNAADWAE-----YLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDP 244
Query: 286 SEMLKVIDKYGVTHFPVVPPI---LMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIED 342
E+ ++I+ +T P P + L+ + L SL+ +GAA ++E
Sbjct: 245 DEVFRLIETERITVLPGPPTMYNSLLQHPDRSA----EDLSSLRLAVTGAASMPVALLER 300
Query: 343 FVGAFPHVDFIQGYGMTESTAVGT-----RGFNTKKFSKYFSVGLLAPNIQAKVVDWVNG 397
F + GYG++E++ V T T + +G ++ K+V+ G
Sbjct: 301 FESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGT----IGTAIAGVENKIVN-ELG 355
Query: 398 CFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLK 457
+P G GEL +RGP MK Y ++ +AT + ID +GWLHTGD+ DE+GYLYIVDR K
Sbjct: 356 EEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKK 415
Query: 458 EVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVI 517
++ G+ + PA++E VL HP + + AV G D+ LGE+ A+VV + G+ LTE +I
Sbjct: 416 DMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELI 475
Query: 518 DYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
Y + +A YK R + F +PK+A GKVL+R LR+
Sbjct: 476 AYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE 512
|
Length = 513 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 335 bits (862), Expect = e-109
Identities = 175/526 (33%), Positives = 267/526 (50%), Gaps = 42/526 (7%)
Query: 48 IFSH---KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSI 104
I H KH + A+ + Y +L V +A+ LR G+ +GD V + NS
Sbjct: 11 ILRHGARKHPDKEAVYFDGRRTT--YAELDERVNRLANALRA-LGVKKGDRVAVFDWNSH 67
Query: 105 YFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYEN-VDKLRSWGTTP 163
+ + A+ +GA++ P+N L EI + + ++ L + + + + P
Sbjct: 68 EYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAIL--PQLP 125
Query: 164 VVA---VPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGA 220
V V + ++ +L+A D + P I + D AA+LY+SGTTG KG
Sbjct: 126 TVRTVIVEGDGPAAPLAPEVGEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGV 185
Query: 221 ELTHGNF---IAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSV 277
L+H N AV +++ LS + V+L ++PMFH++ L L L+ G
Sbjct: 186 VLSHRNLFLHSLAVCAWLK--------LSRDDVYLVIVPMFHVHAWGLPYLALM-AGAKQ 236
Query: 278 VVMRRFEASEMLKVIDKYGVTHFPVVPPILMAL--TKAAKGLCGNSLKSLKQVSSGAAPA 335
V+ RRF+ +L +I+ VT F VP I L A + SL+ V G A
Sbjct: 237 VIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFV---DFSSLRLVIYGGAAL 293
Query: 336 NSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFN------TKKFSKYFSVGLLAPNIQA 389
++ +F F +D +QGYGMTE++ V + +++K S G P ++A
Sbjct: 294 PPALLREFKEKF-GIDLVQGYGMTETSPVVS--VLPPEDQLPGQWTKRRSAGRPLPGVEA 350
Query: 390 KVVDWVNGCFLPP--GSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDED 447
++VD +G LPP G GE+ +RGP M+ Y N +AT TID GWLHTGD+ Y DED
Sbjct: 351 RIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDG-GWLHTGDVGYIDED 408
Query: 448 GYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD 507
GYLYI DR+K+VI G I P +LE L HP + +VAV G D+ GE PVA VV +
Sbjct: 409 GYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKP 468
Query: 508 GSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
G+TL + +L R+A +K +R+ F +P+++ GK+L+R LR
Sbjct: 469 GATLDAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLR 514
|
Length = 521 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 321 bits (825), Expect = e-105
Identities = 137/423 (32%), Positives = 205/423 (48%), Gaps = 15/423 (3%)
Query: 69 SYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLS 128
+Y +L +A+ LR G+ GD V +LLPNS + V LA+L GA +P++P L
Sbjct: 1 TYRELDERANRLAAALRAL-GVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLP 59
Query: 129 VSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIA 188
+ + ++ + T E + KL +V + +V D EG +L+A
Sbjct: 60 AERLAYILE--DSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLA 117
Query: 189 GKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSE 248
G P + D A I+Y+SGTTG KG LTH N +A L+
Sbjct: 118 GASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAE-----RFGLTPG 172
Query: 249 AVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFE--ASEMLKVIDKYGVTHFPVVPPI 306
L +LP H G G L G ++V++ +F + +L +I+KY VT VP +
Sbjct: 173 DRVLLLLP-LHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTL 231
Query: 307 LMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGT 366
L L KA + L SL+ V SG P +++ F V + GYG TE+T V T
Sbjct: 232 LRLLLKAPE-EKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVAT 290
Query: 367 RGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT 426
K S+G P ++ KV+D G +PPG GEL +RGPG + Y+N+ + T
Sbjct: 291 ANLPGDPEVKPGSIGRPLPGVEVKVLDE-EGEPVPPGEVGELCIRGPGVARGYLNDPELT 349
Query: 427 MSTIDKEGWL--HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILD 484
++GW TGD+ +DEDGYL I+ R + +K G +I P ++E VL+ HP + +
Sbjct: 350 AERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAE 409
Query: 485 VAV 487
AV
Sbjct: 410 AAV 412
|
Length = 412 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 311 bits (799), Expect = e-101
Identities = 142/491 (28%), Positives = 231/491 (47%), Gaps = 66/491 (13%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPL 126
I+Y +L LV +A L+ G+ +GD V L + NS F + + A+L GA+V+P+NP+
Sbjct: 1 VITYAELLELVDRLAGLLQEK-GVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPM 59
Query: 127 LSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKL 186
+E++ + ++ + + +
Sbjct: 60 NREAELEHILNDSGARVLIVGSELD----------------------------------- 84
Query: 187 IAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLS 246
D A I Y+SGTTG KG TH +A + L+
Sbjct: 85 ----------------DVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSG-----LT 123
Query: 247 SEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPI 306
++V LA LP+FH+ G+ + G ++V++ R++ + I++Y VTH+ + +
Sbjct: 124 PDSVLLAFLPLFHVAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTM 183
Query: 307 LMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGT 366
++ L A L SLK V G A + E + + +GYG+TE+
Sbjct: 184 VVDLL-AHPRFADYDLSSLKVVGGGGAALPPAVAERLKALT-GLLYEEGYGLTETHTCTH 241
Query: 367 RGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT 426
FN K +G+ A+V+D G LPPG GE+ +RGP K Y N +AT
Sbjct: 242 --FNPPDRPKPQCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEAT 299
Query: 427 ---MSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEIL 483
+D + + TGD+ Y DE+GY + +DR+K +I +GY++ PA++E +L HP +L
Sbjct: 300 AESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVL 359
Query: 484 DVAVTGAMDKVLGEIPVAFVVRRDG--STLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPK 541
+V V G D GE+ AFVV + +TE +I++ +R+A YK R + F +PK
Sbjct: 360 EVCVIGRPDPRRGEVVKAFVVLKPDYRGKVTEEDIIEWCRERMAAYKYPRIIEFVDELPK 419
Query: 542 SAAGKVLRREL 552
+A+GKVL R L
Sbjct: 420 TASGKVLWRLL 430
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 304 bits (782), Expect = 1e-99
Identities = 136/349 (38%), Positives = 195/349 (55%), Gaps = 14/349 (4%)
Query: 203 DTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYG 262
D A ILY+SGTTG KG L+H N +A + +Q L+ V L+VLP+FH+ G
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQ-----ALAQAIGLTEGDVLLSVLPLFHVVG 55
Query: 263 LSLFALGLLSLGPSVVVMRRFE-ASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNS 321
LG L G +VV+ F L++I++Y VT VP + AL KAA+ +
Sbjct: 56 GGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYD- 114
Query: 322 LKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAV--GTRGFNTKKFSKYFS 379
L SL+ + SG P + +++E F P ++GYG+TE++ V KK +
Sbjct: 115 LSSLRLLISGGEPLSPELLERFE-ERPGAPILEGYGLTETSVVTSTNPDSELKKPG---T 170
Query: 380 VGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTG 439
VG P ++ +VVD G LPPG GEL +RGP MK Y NN T + ++GW TG
Sbjct: 171 VGRPVPGVEVRVVD-EEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTG 229
Query: 440 DIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIP 499
D+ Y DE+GYLYI R K++IK G + PA++E+VL+ HP + + AV G D+ GE
Sbjct: 230 DLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERI 289
Query: 500 VAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVL 548
VAFVV R G+ + +L +R+APYK R + F +PK+A+GK+
Sbjct: 290 VAFVVLRPGADALAEELKAHLRERLAPYKVPRVIEFVDELPKTASGKID 338
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 311 bits (798), Expect = 2e-99
Identities = 194/549 (35%), Positives = 296/549 (53%), Gaps = 34/549 (6%)
Query: 25 IYHSKHPSVNLPANDSLLDVDSFIF--SHKHNGRTALVDSLSGYSISYPQLFPLVQSVAS 82
I+ S++PSV +P +L D F+ + + + A V++++G +++Y ++ + A
Sbjct: 14 IFRSRYPSVPVPDKLTLPD---FVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAK 70
Query: 83 GLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTK 142
LR G+ +G V+++LPN + ++ L ++ G + NP SEIKKQ K
Sbjct: 71 ALRS-LGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAK 129
Query: 143 ISLAFTIYENVDKLRSWGTTPVVAVPE----NLVNDFKEGRFSDFHKLIAGKFDLVERPV 198
L T N K++ G PV+ + E VN + + + D +
Sbjct: 130 --LIVTNDTNYGKVKGLGL-PVIVLGEEKIEGAVN------WKELLEAADRAGDTSDNEE 180
Query: 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAV--ELF-VRFEASQYEYLSSEAVFLAVL 255
I Q D A+ +SSGTTG SKG LTH N +A + LF V E + + V L ++
Sbjct: 181 ILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPE------MIGQVVTLGLI 234
Query: 256 PMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTK--A 313
P FHIYG++ L VVVM RFE L + V+ P+VPPI++ L K
Sbjct: 235 PFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPI 294
Query: 314 AKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVG-TRGFNTK 372
+ + LK L+ + + AAP +++ F FP V + YG+TE + + T G K
Sbjct: 295 VEEFDLSKLK-LQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEK 353
Query: 373 K--FSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI 430
+K SVG + PN++ K +D G LP + GEL +R M+ Y NN + T TI
Sbjct: 354 GHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTI 413
Query: 431 DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGA 490
D++GWLHTGDI Y D+DG ++IVDR+KE+IKY G+Q++PA+LE +L+ HP + D AV
Sbjct: 414 DEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPL 473
Query: 491 MDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRR 550
D+ GEIP A VV + +E +++++A VA YKKVR V F SIPKS +GK++RR
Sbjct: 474 PDEEAGEIPAACVVINPKAKESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRR 533
Query: 551 ELRKFLTSK 559
L++ + S
Sbjct: 534 LLKEKMLSI 542
|
Length = 546 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 289 bits (742), Expect = 1e-93
Identities = 128/353 (36%), Positives = 190/353 (53%), Gaps = 9/353 (2%)
Query: 202 QDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIY 261
D A IL++SGTTG KG LTH N +A+ R A ++ L+ L V+P+FHI+
Sbjct: 2 DDPALILHTSGTTGRPKGVPLTHKNLLASA----RNIAKSHK-LTPSDRCLNVMPLFHIH 56
Query: 262 GLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNS 321
GL + L L G SVV +F AS+ I KY VT + VP I L K AK G
Sbjct: 57 GLIVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKP 116
Query: 322 LKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVG 381
L+ + S +AP +++ F V ++ YGMTE+ K SVG
Sbjct: 117 PPRLRFIRSASAPLPPAVLDRLEKRF-GVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVG 175
Query: 382 LLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDI 441
++ ++D +G LPPG GE+ +RGP Y+NN +A ++GW TGD+
Sbjct: 176 R-PAGVEVAILD-DDGRPLPPGQEGEIVIRGPNVTAGYLNNPEAN-REAFRDGWFRTGDL 232
Query: 442 AYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVA 501
Y DEDGYL++ R+KE+I G +ISP ++E VL+ HP + + V G D++ GE A
Sbjct: 233 GYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAA 292
Query: 502 FVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
VV R S +T + D+ +R+A +K ++++F ++PK A GK+ RR+L +
Sbjct: 293 AVVLRADSKVTIEELRDFARKRLAAFKVPKKILFVDALPKGATGKIQRRKLAE 345
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 282 bits (723), Expect = 7e-88
Identities = 175/586 (29%), Positives = 274/586 (46%), Gaps = 73/586 (12%)
Query: 17 QWYSPETGIYHSKHPSVNLPANDSLLDV-DSFIFSHKHNGRTALVDSLSGYSISYPQLFP 75
Q Y+P T ++ + +L+D+ D+ + + R AL G + +Y +L
Sbjct: 17 QSYAPWTP------HDLDYG-DTTLVDLYDNAV--ARFGDRPAL--DFFGATTTYAELGK 65
Query: 76 LVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQ 135
V+ A+GLR G+ GD V ++LPN V F A+L LGA+V+ NPL + E++
Sbjct: 66 QVRRAAAGLRA-LGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHP 124
Query: 136 VTLCKTKISLAF-TIYENVDKLRSWGTTP---VVAVPENLVNDF---------------K 176
++++ + + V++LR TTP +V+V N++ +
Sbjct: 125 FEDHGARVAIVWDKVAPTVERLR--RTTPLETIVSV--NMIAAMPLLQRLALRLPIPALR 180
Query: 177 EGR---------FSDFHKLIAGKF----DLVERPVIRQQDTAAILYSSGTTGASKGAELT 223
+ R + L+ V P D A ILY+SGTTG KGA+LT
Sbjct: 181 KARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLT 240
Query: 224 HGNFIAAV---ELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVM 280
H N A + +V E LA LPMFH YGL+L +S+G +V++
Sbjct: 241 HRNLFANAAQGKAWVPGLGDGPE------RVLAALPMFHAYGLTLCLTLAVSIGGELVLL 294
Query: 281 RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKII 340
+ +L + K+ T P VPP+ + +AA+ G L ++ SGA +
Sbjct: 295 PAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEER-GVDLSGVRNAFSGAMALPVSTV 353
Query: 341 ---EDFVGAFPHVDFIQGYGMTEST--AVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWV 395
E G ++GYG+TE++ VG + + Y VG+ P+ + ++VD
Sbjct: 354 ELWEKLTGGL----LVEGYGLTETSPIIVGNP-MSDDRRPGY--VGVPFPDTEVRIVDPE 406
Query: 396 N-GCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVD 454
+ +P G GEL +RGP K Y N + T + +GW TGD+ +EDG++ IVD
Sbjct: 407 DPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVVMEEDGFIRIVD 465
Query: 455 RLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEA 514
R+KE+I G+ + PA++E VL HP + D AV G + E VA VV G+ L
Sbjct: 466 RIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPE 525
Query: 515 AVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560
+ Y + + YK RR +P+ GKV RRE+R+ L KL
Sbjct: 526 GLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRRREVREELLEKL 571
|
Length = 573 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 278 bits (714), Expect = 5e-87
Identities = 142/530 (26%), Positives = 224/530 (42%), Gaps = 33/530 (6%)
Query: 38 NDSLLDVDSFIFSHKHNGRTALV---DSLSGYSISYPQLFPLVQSVASGLRHHFGISQGD 94
N +L +D + + + + TA++ + ++Y L V +A+ L+ G+ GD
Sbjct: 9 NLALNALDRHLEADRPD-DTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGVK-GD 66
Query: 95 AVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVD 154
V + +PNS + LA +GAI ++P LS + ++ K +
Sbjct: 67 RVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPK--VLIADDGTFR 124
Query: 155 KLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTT 214
+ + V + + + + E + D +LY+SGTT
Sbjct: 125 NGKEIALLEDADAVLSSVVVVPRLGL-WYDEAVEKASEKFEFEPLPADDPLFLLYTSGTT 183
Query: 215 GASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLG 274
G KG +HG ++ L +F L F IYGL L+ G
Sbjct: 184 GKPKGIVHSHGGYLVEHRLTAKFHGD----LLPGDRFWNSSDPGWIYGLWYSVFSPLASG 239
Query: 275 PSVVVMRR---FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSG 331
+ V+ + + + ++KY VT F P L L K L SL+ + S
Sbjct: 240 ATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL-GEPYDLSSLRVLGSA 298
Query: 332 AAPANSKIIE---DFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQ 388
P N + E +G V + YG TE+ G K S GL P
Sbjct: 299 GEPLNPEAFEWFYSALG----VWILDIYGQTETGMGFIAGR---PPVKNGSSGLPLPGYA 351
Query: 389 AKVVDWVNGCFLPPGSTGELWLRG--PGTMKEYINNADATMSTIDKEGWLHTGDIAYFDE 446
+ VD G +PPG GEL +R PG Y N+ + W TGD A DE
Sbjct: 352 VRRVD-DEGNPVPPG-VGELVVRLPWPGMALTYWNDPERYKEAY-FGRWYRTGDWAERDE 408
Query: 447 DGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRR 506
DGY ++ R +VIK +G +I P ++E+VL+ HP + + AV G D G+I +AFVV
Sbjct: 409 DGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLA 468
Query: 507 DGSTLTEAA--VIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
G E A + ++A+ + P+ R++ F +PK+A+GK+ RR LRK
Sbjct: 469 AGVEPNELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRK 518
|
Length = 528 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 272 bits (697), Expect = 1e-85
Identities = 151/494 (30%), Positives = 225/494 (45%), Gaps = 63/494 (12%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPL 126
++Y +L +A+ L G+ GD V LPN F V++LA +GA++ P+ P+
Sbjct: 1 RLTYGELDDAADRLAAAL-AELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPI 59
Query: 127 LSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKL 186
E+ + + + V+ VP F
Sbjct: 60 YRERELGFILRQARAR---------------------VLFVP---------DEF------ 83
Query: 187 IAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLS 246
FD P D A +LY+SGTTG KG TH +A V +V L+
Sbjct: 84 --RGFDYAAMP----DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLG-----LT 132
Query: 247 SEAVFLAVLPMFHIYGLSLFALGL---LSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVV 303
+ V L P+ HI G F GL L LG +VV+ R++ + L++I ++GVT
Sbjct: 133 PDDVVLMPSPLAHITG---FLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGA 189
Query: 304 PPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTES-- 361
P L L AA G L SL+ G AP ++ A + YGMTE
Sbjct: 190 TPFLADLLAAAD-AAGPDLPSLRVFLCGGAPVPRELARRAAEALGAKVV-RAYGMTEVPL 247
Query: 362 TAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYIN 421
VGT K + + G P ++ ++VD +G +PPG GEL +RGP Y++
Sbjct: 248 VTVGTPDDPDDKRAA--TDGRPVPGVEVRIVD-DDGNDVPPGEEGELQVRGPQLFLGYLD 304
Query: 422 NADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPE 481
D T +GW TGD+ D DGYL I R K++I G IS ++E +L+ HP
Sbjct: 305 PPDNT-EAFTDDGWFRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPA 363
Query: 482 ILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL-AQRVAPYKKVRRVVFTKSIP 540
+ +VAV D+ LGE A VV G++LT A + ++L AQ +A K R+ ++P
Sbjct: 364 VAEVAVVAMPDERLGERVCAVVVPAPGASLTLAELTEHLAAQGLAKQKWPERLEVVDALP 423
Query: 541 KSAAGKVLRRELRK 554
++ +GKV + ELR+
Sbjct: 424 RTPSGKVQKFELRE 437
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 5e-82
Identities = 159/511 (31%), Positives = 254/511 (49%), Gaps = 33/511 (6%)
Query: 53 HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLA 112
H R A++ ++Y QL V VA+ L + + +G+ + +L NS+ + V+ A
Sbjct: 15 HPDRIAIITEEE--EMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA 72
Query: 113 LLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKL--RSWGTTPVVAVPEN 170
+ + I +P+N L+ +E+ Q+ T + ++N+ + V+
Sbjct: 73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVI----- 127
Query: 171 LVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGN-FIA 229
+ ++ K D + + I Y+SGTTG KGA LT N F
Sbjct: 128 --------SITSLKEIEDRKIDNFVEK--NESASFIICYTSGTTGKPKGAVLTQENMFWN 177
Query: 230 AVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEML 289
A+ + L+ + +LP+FHI G+ LFA L G ++V R+FE ++ L
Sbjct: 178 ALNNTFAID------LTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKAL 231
Query: 290 KVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVG-AFP 348
+I+K+ VT VP I AL +K N L+S++ +G AP +++ +F+ F
Sbjct: 232 SMIEKHKVTVVMGVPTIHQALINCSKFETTN-LQSVRWFYNGGAPCPEELMREFIDRGFL 290
Query: 349 HVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGEL 408
F QG+GMTE++ K S+G +++D N + G GEL
Sbjct: 291 ---FGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELID-ENKNKVEVGEVGEL 346
Query: 409 WLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQIS 468
+RGP MKEY N DAT TI ++GWL TGD+A DEDG++YIV R KE+I G I
Sbjct: 347 LIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIY 405
Query: 469 PADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYK 528
P ++E V+ ++ +VAV G GEIP+AF+V++ S L E VI++ +A YK
Sbjct: 406 PLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKYK 465
Query: 529 KVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559
+ +VF K +PK+A GK+ + +L L S+
Sbjct: 466 IPKEIVFLKELPKNATGKIQKAQLVNQLKSR 496
|
Length = 496 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 261 bits (669), Expect = 1e-81
Identities = 116/357 (32%), Positives = 169/357 (47%), Gaps = 23/357 (6%)
Query: 203 DTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYG 262
DTAAILY+SGTTG KG LTH + A L R L + V L LP+FHI
Sbjct: 82 DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLG-----LRPDDVLLTPLPLFHINA 136
Query: 263 LSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHF---PVVPPILMALTKAAKGLCG 319
+ L +G ++V++ RF AS + K+G T F + ILM +
Sbjct: 137 QAYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDD-RD 195
Query: 320 NSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFS 379
+ L+ + AP + I F F V ++GYGMTE T V + S
Sbjct: 196 HPLRFV-----FGAPLPAAIWPAFEERF-GVKLVEGYGMTE-TGVPI--IAPGDPAPPGS 246
Query: 380 VGLLAPNIQAKVVDWVNGCFLPPGSTGELWLR---GPGTMKEYINNADATMSTIDKEGWL 436
G P ++ ++VD +G +PPG GEL +R K Y +AT + GW
Sbjct: 247 CGRPRPGVEVRIVD-EDGREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWF 304
Query: 437 HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLG 496
HTGD DEDG+LY VDR K+ I+ G IS ++E ++ HP + + AV ++
Sbjct: 305 HTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELGE 364
Query: 497 EIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
+ A VV R G TL A++++ R+ + R + F +PK+ K+ + ELR
Sbjct: 365 DEVKAVVVLRPGETLDPEALLEFCRDRLPYFMVPRYIEFVDELPKTPTEKIQKAELR 421
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 257 bits (659), Expect = 1e-78
Identities = 168/567 (29%), Positives = 266/567 (46%), Gaps = 73/567 (12%)
Query: 21 PETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQLFPLVQSV 80
PET ++H NL + + ++ +TA+V G +ISY +L + +
Sbjct: 8 PETSLFH------NLEVS-----------ARRYPDKTAIV--FYGRAISYRELLEEAERL 48
Query: 81 ASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCK 140
A L+ G+ +GD VLL + NS F + + A+L A+V+P+NP+ E+ VT
Sbjct: 49 AGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSG 108
Query: 141 TKISLAFT---IYENVDKLRSWGTTPV-----------------VAVPENLVN--DFKEG 178
+ +A + V G + +AVP L +
Sbjct: 109 AR--VAIVGSELAPKVAPAV--GNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQAL 164
Query: 179 RFSDFHK----LIAGKFDLVERPVIRQQDTAAIL-YSSGTTGASKGAELTHGNFIAAVEL 233
L AG L P D A+L Y+SGTTG KG TH +A
Sbjct: 165 APGGVVAWKEALAAG---LAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANA-- 219
Query: 234 FVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVID 293
+ + + E+V LAVLP+FH+ G+ + G +VV+M R++ ++I+
Sbjct: 220 ---VGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIE 276
Query: 294 KYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAP---ANSKIIEDFVGAFPHV 350
+Y VTH+ +P +++ A+ GL L SL+ + G A A ++ +++ G +
Sbjct: 277 RYRVTHWTNIPTMVVDFL-ASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELTG----L 331
Query: 351 DFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWL 410
D+++GYG+TE T T N K +G+ + A+V+D LPPG GE+ +
Sbjct: 332 DYVEGYGLTE-TMAQTH-SNPPDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVV 389
Query: 411 RGPGTMKEYINNADATMS---TIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQI 467
GP K Y N +AT ID + + TGD+ DE+GY +I DRLK +I +G+++
Sbjct: 390 HGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKV 449
Query: 468 SPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS--TLTEAAVIDYLAQRVA 525
PA++E +L HP I + V D GE A VV R + TE +I + + +A
Sbjct: 450 WPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAWAREHMA 509
Query: 526 PYKKVRRVVFTKSIPKSAAGKVLRREL 552
YK R V F S+PKS +GK+L R+L
Sbjct: 510 AYKYPRIVEFVDSLPKSGSGKILWRQL 536
|
Length = 546 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 251 bits (642), Expect = 6e-77
Identities = 153/511 (29%), Positives = 252/511 (49%), Gaps = 62/511 (12%)
Query: 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
RTA+ +++ +L V SVA L G+ +GD V LL+ N + ++ AL
Sbjct: 18 RTAIEFE--EKKVTFMELHEAVVSVAGKLAAL-GVKKGDRVALLMKNGMEMILVIHALQQ 74
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDF 175
LGA+ + +N LS E+ Q+ + K + ++
Sbjct: 75 LGAVAVLLNTRLSREELLWQLDDAEVK---------------------CLITDDDFEAKL 113
Query: 176 KEGRFSDFHKLIAGKFDLVERPVIRQQ-----DTAAILYSSGTTGASKGAELTHGN-FIA 229
G F +L+ G + Q+ + A I+Y+SGTTG KG T+GN + +
Sbjct: 114 IPGISVKFAELMNGP----KEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWS 169
Query: 230 AVELFVRFEASQYEY-LSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEM 288
AV S L+ + +LA +P+FHI GLS+ ++ G VV++ +F+A ++
Sbjct: 170 AV-------GSALNLGLTEDDCWLAAVPIFHISGLSILMRSVI-YGMRVVLVEKFDAEKI 221
Query: 289 LKVIDKYGVTHFPVVPPILMAL-TKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAF 347
K++ GVT VV +L L + +G +S + + G PA ++E
Sbjct: 222 NKLLQTGGVTIISVVSTMLQRLLERLGEGTYPSSFRC---MLLGGGPAPKPLLE--QCKE 276
Query: 348 PHVDFIQGYGMTE-STAVGTRGFNTKKFS--KYFSVGL-LAPNIQAKVVDWVNGCFLPPG 403
+ Q YGMTE ++ + T + + K S G L P + K+ +G +PP
Sbjct: 277 KGIPVYQSYGMTETASQIVTLSP---EDALTKLGSAGKPLFP-CELKIEK--DGVVVPPF 330
Query: 404 STGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYN 463
GE+ ++GP K Y+N DAT T ++GW TGDI Y DE+G+LY++DR ++I
Sbjct: 331 EEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISG 389
Query: 464 GYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQR 523
G I PA++E VL+ HP + + V G D G++PVAFVV+ +TE + + ++
Sbjct: 390 GENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVK--SGEVTEEELRHFCEEK 447
Query: 524 VAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
+A YK +R F + +P++A+GK+LR EL++
Sbjct: 448 LAKYKVPKRFYFVEELPRNASGKLLRHELKQ 478
|
Length = 483 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 249 bits (639), Expect = 4e-76
Identities = 140/507 (27%), Positives = 230/507 (45%), Gaps = 35/507 (6%)
Query: 68 ISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLL 127
+Y + V+ +A+ L G+ GD V L N+ ++ A+ +GA++ +NP L
Sbjct: 26 YTYADFYRRVRRLANALESL-GVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTLNPRL 84
Query: 128 SVSEI--------KKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGR 179
S +I K + + + L I + +++ +PE
Sbjct: 85 SPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPET-----SLPN 139
Query: 180 FSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTH-GNFIAAVELFVRFE 238
+ +L+ + E P + + A + Y+SGTTG KG +H + +
Sbjct: 140 VYAYEELLEEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLAS----A 195
Query: 239 ASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVT 298
LS L V+PMFH+ L + V+ R + + +L +I++ VT
Sbjct: 196 LPDSLGLSESDTVLPVVPMFHVNAWGLPYAATMVGAKLVLPGRYLDPASLLDLIEEEKVT 255
Query: 299 HFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGM 358
VP I + L + G L SL++V G + +IE V+ I +GM
Sbjct: 256 VSAGVPTIWLGLLNYLEAN-GKDLSSLRRVVVGGSALPRSLIEKLEER--GVEVIHAWGM 312
Query: 359 TESTAVGTRGFNTK---------KFSKYFSVGLLAPNIQAKVVDWVNGCFLP--PGSTGE 407
TE++ +GT K G P ++ ++VD G LP + GE
Sbjct: 313 TETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVD-DEGNELPWDGKTVGE 371
Query: 408 LWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQI 467
L +RGP Y + + T + ++GW TGD+A DEDGY+ I DR K+VIK G I
Sbjct: 372 LVVRGPWVTGSYYKDPEKT-EELTRDGWFRTGDVAVIDEDGYIQITDRAKDVIKSGGEWI 430
Query: 468 SPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPY 527
S +LE L+ HP + + AV G + GE P+A VV + G+ +TE ++++LA++VA +
Sbjct: 431 SSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVLKPGAKVTEEELLEHLAKKVAKW 490
Query: 528 KKVRRVVFTKSIPKSAAGKVLRRELRK 554
RVVF IPK++ GK ++ LR+
Sbjct: 491 WLPDRVVFVDEIPKTSVGKFDKKALRE 517
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 6e-76
Identities = 152/510 (29%), Positives = 221/510 (43%), Gaps = 62/510 (12%)
Query: 52 KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
+H RTA+VD ++Y +L V +A+GL GI GD VL+ LPN F +++
Sbjct: 27 RHPDRTAVVDG--PRRLTYRELDAAVDRLAAGL-LALGIGPGDRVLVQLPNVAEFVILYF 83
Query: 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENL 171
AL LGAI + P EI + Y
Sbjct: 84 ALFKLGAIPVLALPAHRAHEIGH---FARQ---SEAKAY--------------------- 116
Query: 172 VNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAV 231
RFS F A +L+E D A S GTTG K TH +++ +
Sbjct: 117 ---IIADRFSGFD-YAALARELLEE----LPDVALFQLSGGTTGLPKLIPRTHNDYLYSA 168
Query: 232 ELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSL-FALGLLSLGPSVVVMRRFEASEMLK 290
EA L V+LAVLP H + LS LG L G +VV+
Sbjct: 169 RASA--EACG---LDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFP 223
Query: 291 VIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHV 350
+I++ VTH +VP +L +AA+ L SL+ + G AP + ++
Sbjct: 224 LIEREKVTHTALVPALLNLWLEAAEWDQ-ADLSSLRVIQVGGAPLSPELARRVEERL-GC 281
Query: 351 DFIQGYGMTESTAVGTRG-------FNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPG 403
Q +GM E TR T+ ++P + ++VD G +PPG
Sbjct: 282 PLQQVFGMAEGLVNYTRLDDPPDVIMRTQGRP-------ISPADEIRIVD-DQGEPVPPG 333
Query: 404 STGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYN 463
GEL RGP T++ Y + +G+ TGD+ D DGY +V R+K+ I
Sbjct: 334 EVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDADGYYRVVGRIKDQINRG 393
Query: 464 GYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL-AQ 522
G +ISP ++E +L+ HP + D AV G D+VLGE AFVV R G+ T A + +L Q
Sbjct: 394 GEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVPRGGAAPTLAELRAFLREQ 453
Query: 523 RVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
+A +K R+ S+P + GKV ++ L
Sbjct: 454 GLAKFKLPDRLEVVDSLPLTPVGKVDKKAL 483
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 245 bits (629), Expect = 1e-75
Identities = 117/350 (33%), Positives = 181/350 (51%), Gaps = 11/350 (3%)
Query: 203 DTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYG 262
D A I+Y+SGTTG KG LTHGN A V EA ++ ++ V L LP+ H++G
Sbjct: 89 DPALIIYTSGTTGRPKGVVLTHGNLAANARALV--EAWRW---TASDVLLHALPLHHVHG 143
Query: 263 LSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGL--CGN 320
L L G SV + RF+ E + +T F VP I L + +
Sbjct: 144 LFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEHYEFDDAAAA 203
Query: 321 SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSV 380
+ ++L+ SG+A ++E + H ++ YGMTE+ + + ++ + +V
Sbjct: 204 AARNLRLFVSGSAALPVPVLERWEERTGHT-LLERYGMTETGMALSNPLDGER--RPGTV 260
Query: 381 GLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGD 440
GL P ++ ++VD G L G GE+ +RGP EY N +AT ++GW TGD
Sbjct: 261 GLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGD 320
Query: 441 IAYFDEDGYLYIVDRLKE-VIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIP 499
+ DEDGY I+ R + +IK GY++S ++E L+ HP + +VAV G D GE
Sbjct: 321 VGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAV 380
Query: 500 VAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLR 549
VA VV G+ LT A + + +++APYK +RV+ +P++A GKV +
Sbjct: 381 VAVVVPEAGAALTLAELRAWAREKLAPYKIPKRVIVVDELPRNAMGKVQK 430
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 241 bits (618), Expect = 5e-75
Identities = 123/363 (33%), Positives = 176/363 (48%), Gaps = 25/363 (6%)
Query: 202 QDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIY 261
D AAI+Y+SG+TG KG L+H N A QY L+ + LAVLP Y
Sbjct: 2 DDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIA-----QYLELTEDDRILAVLPFSFDY 56
Query: 262 GLSLFALGLLSLGPSVVVMRRFE-ASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGN 320
GLS G ++V+ RF ++LK + K +T F VP L + L
Sbjct: 57 GLSQLLTAFRV-GGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDP-LARE 114
Query: 321 SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNT-----KKFS 375
SL+ +++ +K I AFP YG+TE+ T +
Sbjct: 115 DFPSLRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRS------TYLPPEELDR 168
Query: 376 KYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID---- 431
+ S+G PN++ VVD +G PG GEL RG MK Y N+ +AT +
Sbjct: 169 RPDSIGKAIPNVELWVVD-EDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPL 227
Query: 432 -KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGA 490
E L+TGD+ DE+GYLY V R ++IK GY++SP ++E V+ HP + + AV G
Sbjct: 228 PGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGV 287
Query: 491 MDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRR 550
D +LG+ VA VV DG +L E ++ + + + Y +VF S+PK+A GKV R
Sbjct: 288 PDPLLGQAIVAVVVSADGESLDEKELLKHCRKHLPNYMVPAEIVFVDSLPKNANGKVDRS 347
Query: 551 ELR 553
LR
Sbjct: 348 ALR 350
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 246 bits (631), Expect = 7e-75
Identities = 142/516 (27%), Positives = 242/516 (46%), Gaps = 36/516 (6%)
Query: 52 KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
++ +TALV S +Y +L V VA+ L G+ +GD V L NS + +++L
Sbjct: 23 RYPDKTALVFG--DRSWTYAELDAAVNRVAAALLD-LGLKKGDRVAALGHNSDAYALLWL 79
Query: 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFT-IYENVDKLRSWGTTPVVAVPEN 170
A GA+ +P+N +L+ E+ + + L + + + + +
Sbjct: 80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLV 139
Query: 171 LVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAA 230
L G + DF + D A ILY+SGT KGA LTH IA
Sbjct: 140 LGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIA- 198
Query: 231 VELFVRFEASQYEYLS--------SEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR 282
EY+S ++ + L LP++H L +F L +G + V++
Sbjct: 199 ------------EYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDA 246
Query: 283 FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIED 342
+ +L+ I+ +T F P + ++L + L SL++ GA+ +++++
Sbjct: 247 PDPELILRTIEAERITSFFAPPTVWISLLRHP-DFDTRDLSSLRKGYYGASIMPVEVLKE 305
Query: 343 FVGAFPHVDFIQGYGMTE----STAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGC 398
P + F YG TE +T +G + + S G N++ +VVD +G
Sbjct: 306 LRERLPGLRFYNCYGQTEIAPLATVLGPE----EHLRRPGSAGRPVLNVETRVVD-DDGN 360
Query: 399 FLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKE 458
+ PG GE+ R P M Y ++ + T + GW H+GD+ DE+GY+ +VDR K+
Sbjct: 361 DVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKD 419
Query: 459 VIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVID 518
+IK G ++ ++E L HP + +VAV G D E A VV + G+T+TE +I
Sbjct: 420 MIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIA 479
Query: 519 YLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
+ R+A +K +RV+F +P++ +GK+L+RELR+
Sbjct: 480 HCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRE 515
|
Length = 523 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 3e-74
Identities = 162/497 (32%), Positives = 247/497 (49%), Gaps = 23/497 (4%)
Query: 65 GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMN 124
G + ++ +L V ++A L G+ GD VL+L+ N F LA LGAI +P+N
Sbjct: 40 GNTTTWRELDDRVAALAGALSRR-GVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVN 98
Query: 125 PLLSVSEIKKQVTLCKTKISLAFTIYEN----VDKLRSWGTTPVVAVPENLVNDFKEGRF 180
L+ EI V+ C + + V + +T VVA +
Sbjct: 99 FRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVA------GGSSDDSV 152
Query: 181 SDFHKLIAGKFDLVERPVIRQQDT-AAILYSSGTTGASKGAELTHGNFIAAVELFVRFEA 239
+ L+A PV D+ A I+Y+SGTTG KGA LTH N +R
Sbjct: 153 LGYEDLLAEA-GPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLR--T 209
Query: 240 SQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV-MRRFEASEMLKVIDKYGVT 298
+ + ++S+ F+ V P+FHI G+ GLL P+V+ + F+ ++L V++ VT
Sbjct: 210 NGAD-INSDVGFVGV-PLFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVT 267
Query: 299 HFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGM 358
+VP A+ A + L L+ +S GAAPA+ ++ FP + +G
Sbjct: 268 GIFLVPAQWQAVC-AEQQARPRDLA-LRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQ 325
Query: 359 TESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKE 418
TE + V K SVG + P + A+VVD N +P G GE+ R P M
Sbjct: 326 TEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSG 384
Query: 419 YINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLIC 478
Y NN +AT GW H+GD+ DE+GY+++VDR K++I G I A++E VL
Sbjct: 385 YWNNPEATAEAFAG-GWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLAS 443
Query: 479 HPEILDVAVTGAMDKVLGEIPVAFV-VRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTK 537
HP+I++VAV G D+ GE+PVA VR D + LT + ++L R+A YK + +
Sbjct: 444 HPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKALEIVD 503
Query: 538 SIPKSAAGKVLRRELRK 554
++P++ AGKVL+ ELR+
Sbjct: 504 ALPRNPAGKVLKTELRE 520
|
Length = 542 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 237 bits (607), Expect = 2e-71
Identities = 148/525 (28%), Positives = 242/525 (46%), Gaps = 50/525 (9%)
Query: 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
RTA+V +Y + + + +AS L GI +GD V +L PN+ +
Sbjct: 20 RTAVVYG--DRRYTYRETYDRCRRLASALSK-LGIGKGDVVAVLAPNTPAMLEAHFGVPM 76
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENV--DKLRSWGTTPVVA----VPE 169
GA+++P+N L +I + + K+ + ++ + L T ++ V
Sbjct: 77 AGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVIS 136
Query: 170 NLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTH-GNFI 228
D +EG + D L G D + P + D ++ Y+SGTTG KG TH G ++
Sbjct: 137 PAAEDSEEGDYEDL--LAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYL 194
Query: 229 AAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEM 288
A+ + + V+L LPMFH G F + ++G + V +R+ +A +
Sbjct: 195 NALGNVIEWGMPD------RPVYLWTLPMFHCNGWC-FPWAITAVGGTHVCLRKVDAPAI 247
Query: 289 LKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQ----VSSGAAPANSKI--IED 342
+I+K+ VTH P +L L A + L + +++GA P + I +E+
Sbjct: 248 YDLIEKHKVTHLCGAPTVLNMLANAPE----ADKLPLPRPVRVMTAGAPPPPAVIKKMEE 303
Query: 343 FVGAFPHVDFIQGYGMTESTAVGT-----RGFNTKKFSKYFS------VGLLAPNIQAKV 391
HV YG+TE+ T ++ + V + + V
Sbjct: 304 LGFEVTHV-----YGLTETYGPITVCEWKPEWDALPAEERARLKARQGVRYVGLE-EVDV 357
Query: 392 VDWVNGCFLPP-GST-GELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGY 449
VD +P G T GE+ +RG MK Y N +AT GW H+GD+A DGY
Sbjct: 358 VDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAF-AGGWFHSGDLAVVHPDGY 416
Query: 450 LYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS 509
+ I DR K++I G IS ++E VL HP +L+ AV D+ GE P AFVV + G+
Sbjct: 417 IEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAFVVLKPGA 476
Query: 510 TLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
++TE +I+Y +++A +K + V F +PK+A GK+ + LR+
Sbjct: 477 SVTEEELIEYCREKLAHFKVPKTVEFV-ELPKTATGKIQKFVLRE 520
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 234 bits (598), Expect = 1e-70
Identities = 149/508 (29%), Positives = 233/508 (45%), Gaps = 36/508 (7%)
Query: 55 GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114
R A VD G +Y +L LV +A+ LR G G+ + +L NS++ + A
Sbjct: 10 QRLAAVDLALGRRWTYAELDALVGRLAAVLRRR-GCVDGERLAVLARNSVWLVALHFACA 68
Query: 115 YLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVND 174
+GAI +P+N LS SE+ + + ++ L D + G T V
Sbjct: 69 RVGAIYVPLNWRLSASELDALLQDAEPRLLLG-------DDAVAAGRTDVED-------- 113
Query: 175 FKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELF 234
+ F + + P I + + IL++SGT+G KG L+ N F
Sbjct: 114 -----LAAFIASADAL-EPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNF 167
Query: 235 VRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVID- 293
+ + + FL PMFHI GL +L++G S++V FE L +
Sbjct: 168 -----GVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGD 222
Query: 294 -KYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGA-FPHVD 351
G+TH+ VP + +A G +L+ L + +G AP ++ I ++ P VD
Sbjct: 223 PALGITHYFCVPQ-MAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDDGIPMVD 281
Query: 352 FIQGYGMTES-TAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWL 410
G+GM+E+ T G +K + G+ P +Q +VVD G P G GEL L
Sbjct: 282 ---GFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLL 337
Query: 411 RGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPA 470
RGP Y AT +GW TGDIA D DG+ ++VDR K++ G + PA
Sbjct: 338 RGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPA 397
Query: 471 DLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKV 530
++E VL HP I + AV G D GE+ +V DG+ L + +L+ R+A YK
Sbjct: 398 EIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLAKYKVP 457
Query: 531 RRVVFTKSIPKSAAGKVLRRELRKFLTS 558
+ + ++P++A+GK+ + LR L +
Sbjct: 458 KHLRLVDALPRTASGKLQKARLRDALAA 485
|
Length = 488 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 2e-66
Identities = 168/541 (31%), Positives = 276/541 (51%), Gaps = 62/541 (11%)
Query: 51 HKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIF 110
++ + A ++ G +++ +L ++ A+ L++ G+ +GD V L++PN + +P+
Sbjct: 34 ARYADQPAFINM--GEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIAL 91
Query: 111 LALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKI-----SLAFTIYENVDKLRSWGTTPVV 165
+L G IV+ +NPL + E++ Q+ K + A T+ + V K TPV
Sbjct: 92 FGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFK------TPVK 145
Query: 166 AVPENLVND---FKEGRFSDF-----HKLIAGKFDLVE-----------------RPVIR 200
V + D +G +F +L+ K+ L + +P +
Sbjct: 146 HVILTRMGDQLSTAKGTLVNFVVKYIKRLVP-KYHLPDAISFRSALHKGRRMQYVKPELV 204
Query: 201 QQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSS--EAVFLAVLPMF 258
+D A + Y+ GTTG +KGA LTH N +A +E + +A+ L E V A LP++
Sbjct: 205 PEDLAFLQYTGGTTGVAKGAMLTHRNMLANLE---QAKAAYGPLLHPGKELVVTA-LPLY 260
Query: 259 HIYGLSLFALGLLSLGPSVVVM---RRFEASEMLKVIDKYGVTHFPVVPPILMAL--TKA 313
HI+ L++ L + LG +++ R +K + KY T V + AL +
Sbjct: 261 HIFALTVNCLLFIELGGQNLLITNPRDIPG--FVKELKKYPFTAITGVNTLFNALLNNEE 318
Query: 314 AKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTE-STAVGTRGFNTK 372
+ L +SLK +S G A + + + ++GYG+TE S V ++
Sbjct: 319 FQELDFSSLK----LSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDLD 374
Query: 373 KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDK 432
+S S+GL P+ + K+VD +G +PPG GELW++GP M Y +AT I K
Sbjct: 375 YYSG--SIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-K 430
Query: 433 EGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMD 492
+GWL TGDIA DE+G+L IVDR K++I +G+ + P ++E V++ HP++L+VA G
Sbjct: 431 DGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPS 490
Query: 493 KVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
+V GE FVV++D S LTE +I + + + YK + V F +PKS GK+LRREL
Sbjct: 491 EVSGEAVKIFVVKKDPS-LTEEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRREL 549
Query: 553 R 553
R
Sbjct: 550 R 550
|
Length = 560 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 220 bits (563), Expect = 3e-66
Identities = 112/364 (30%), Positives = 177/364 (48%), Gaps = 38/364 (10%)
Query: 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEA--VFLAVLP 256
A I+++SG+TG K T GN +A+ S E L +L LP
Sbjct: 74 PDLDRPATIIFTSGSTGKPKAVVHTWGNHLASAR------GSA-ENLGLTPDDNWLLSLP 126
Query: 257 MFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKG 316
+FH+ GL++ LL+ G ++V+ +F+A + + ++ +GVTH +VP L L ++
Sbjct: 127 LFHVSGLAIVMRSLLA-GGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLLESLGA 185
Query: 317 LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTE--STAVGTRGFNTKKF 374
L SL+ V G AP ++E + YGMTE S T K
Sbjct: 186 ---RWLSSLRAVLLGGAPIPPSLLE--QARQRGIPLYPTYGMTETASQVA------TLKP 234
Query: 375 S----KYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI 430
K SVG P + ++V+ GE+ +RGP Y+ T +
Sbjct: 235 DDFLAKLGSVGKPLPGRELRIVN---------PQDGEILVRGPSLFLGYLPQGGLT-PPL 284
Query: 431 DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGA 490
D++GW HTGD+ Y D +GYLY++ R ++I G I P ++E VL+ HP + + AV G
Sbjct: 285 DEDGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGV 344
Query: 491 MDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRR 550
D G+ PVAFVV D ++ + +LA ++A YK+ +R +P++A+GK+ R
Sbjct: 345 PDDEWGQRPVAFVVPND-DPVSVEELQAFLADKLAKYKRPKRWYPLPELPRNASGKIDRA 403
Query: 551 ELRK 554
LR+
Sbjct: 404 ALRQ 407
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 224 bits (572), Expect = 5e-66
Identities = 153/526 (29%), Positives = 249/526 (47%), Gaps = 57/526 (10%)
Query: 65 GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMN 124
G +++Y +L+ L + A+ L+ H + GD + + LPN + +PV + G IV+ N
Sbjct: 47 GKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTN 106
Query: 125 PLLSVSEIKKQ-------VTLC-------------KTKIS--LAFTIYENVDKLRSWGTT 162
PL + E++ Q +C KT + + + + + L+
Sbjct: 107 PLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLIN 166
Query: 163 PVVAVPENLVNDF---KEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKG 219
VV + +V + + +F+D L G V + D A + Y+ GTTG +KG
Sbjct: 167 AVVKHVKKMVPAYHLPQAVKFND--ALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKG 224
Query: 220 AELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279
A LTH N +A + S + +A LP++HIY + + ++ +G ++
Sbjct: 225 AMLTHRNLVANMLQCRALMGSNLN--EGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNIL 282
Query: 280 M---RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNS------LKSLKQVSS 330
+ R A M+K + K+ + F + L LC N +LK S
Sbjct: 283 ISNPRDLPA--MVKELGKWKFSGF-------VGLNTLFVALCNNEAFRKLDFSALKLTLS 333
Query: 331 GAAP---ANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNI 387
G A ++ ++ G +GYGMTE++ V + N + + ++G+ P+
Sbjct: 334 GGMALQLATAERWKEVTGC----AICEGYGMTETSPVVS--VNPSQAIQVGTIGIPVPST 387
Query: 388 QAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDED 447
KV+D +G LP G GEL ++GP MK Y +AT +D +GWL TGDIA ED
Sbjct: 388 LCKVID-DDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQED 446
Query: 448 GYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD 507
GY+ IVDR K++I +G+ + P +LE VL P +L A G D+ GE FVV +
Sbjct: 447 GYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKP 506
Query: 508 GSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
G TLT+ V++++ + YK + V F +P + GK+LRRELR
Sbjct: 507 GETLTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELR 552
|
Length = 562 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 222 bits (567), Expect = 8e-66
Identities = 149/522 (28%), Positives = 236/522 (45%), Gaps = 33/522 (6%)
Query: 44 VDSFIFSHKHNGR---TALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLL 100
F+ H + GR AL S++Y +L V + LR GI + + VLL+L
Sbjct: 6 AVYFLDRHLNEGRGDKIALYYDDG--SLTYGELQEEVNRWGNALREL-GIERENRVLLIL 62
Query: 101 PNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG 160
++ FP F + +GA+ +P+N LL+ + + + + ++ + V K
Sbjct: 63 LDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQK 122
Query: 161 TTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGA 220
+ V +V + +LIA + +E D A LYSSG+TG KG
Sbjct: 123 DPHLRHV---IVVGGAGPGALSYAQLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGV 179
Query: 221 ELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGL---SLFALGLLSLGPSV 277
H + + E + + ++ + V + +F YGL F L S+G +
Sbjct: 180 VHLHHDMLVTAEAYAK----NVLGITEDDVVFSAAKLFFAYGLGNGLYFPL---SVGATT 232
Query: 278 VVM-RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPAN 336
V+M R + I++Y T F VP + A+ AA L SL+ S
Sbjct: 233 VLMPERPTPDAVFATIERYKPTVFFGVPTLYAAML-AAPEKPERDLSSLRLCVSAGEALP 291
Query: 337 SKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGF--NTKKFSKYFSVGLLAPNIQAKVVDW 394
++I + F ++ + G G TE + F N KY + G P + K+VD
Sbjct: 292 AEIGYRWKELF-GLEILDGIGSTEMLHI----FLSNRPGAVKYGTSGKPVPGYEVKLVD- 345
Query: 395 VNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVD 454
+G + G GELW+RG + Y N + T T W TGD Y DEDGY +
Sbjct: 346 EDGEEVADGEIGELWVRGDSSAAGYWNRREKTRETF-VGEWTRTGDKYYRDEDGYYWYCG 404
Query: 455 RLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDG---STL 511
R +++K +G +SP ++E L+ HP +L+ AV GA D+ P AFVV +DG S
Sbjct: 405 RSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPKAFVVLKDGYQPSPE 464
Query: 512 TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
E + D++ ++APYK R + F +PK+A GK+ R +LR
Sbjct: 465 LETELKDFVKDKLAPYKYPRWIEFVDELPKTATGKIQRFKLR 506
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 1e-65
Identities = 156/525 (29%), Positives = 252/525 (48%), Gaps = 50/525 (9%)
Query: 65 GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMN 124
G+ I+Y +L L A+ LR G+ GD V + LPN F ++F +L LGA+ +P++
Sbjct: 56 GHVITYAELDELSDRFAALLRQR-GVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVS 114
Query: 125 PLLSVSEIKKQVTLCKTKISLAF-TIYENVDKLRSWGT----------------TPVVAV 167
PL E+ ++ ++ LA + V+++R+ T P + +
Sbjct: 115 PLFREHELSYELNDAGAEVLLALDQLAPVVEQVRA-ETSLRHVIVTSLADVLPAEPTLPL 173
Query: 168 PENLVNDFKE--GRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHG 225
P+ + + D + V P AA+ Y+ GTTG KG E T
Sbjct: 174 PD-SLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQR 232
Query: 226 NFI--AAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRF 283
+ + AA V + ++VFL+ LP F I G + L L G ++V++ R+
Sbjct: 233 DMVYTAAAAYAVAVVGGE------DSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARW 286
Query: 284 EASEMLKVIDKYGVTH-FPVVPPI--LMALTKAAKGLCGNSLKSLKQVSSGAAPANSKII 340
+A + +++Y VT +V LM + A+ L SL+QV K+
Sbjct: 287 DAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAE----YDLSSLRQV--RVVSFVKKLN 340
Query: 341 EDFVGAFP----HVDFIQGYGMTES-TA-VGTRGFNTKKF---SKYFSVGLLAPNIQAKV 391
D+ + V +GMTE+ T T GF F S+ VGL P + K+
Sbjct: 341 PDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKI 400
Query: 392 VDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLY 451
D+ G LP G+ GE+ +R P +K Y N +AT + ++GWLHTGDI DE G+L+
Sbjct: 401 CDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLH 459
Query: 452 IVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTL 511
+ R KE++K NG + P+++E +L HP +L AV G D G++PVAFV + G+ L
Sbjct: 460 YLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADL 519
Query: 512 TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFL 556
T AA+ + + +A Y KV + ++P +A GKV +++L+
Sbjct: 520 TAAALQAWCRENMAVY-KVPEIRIVDALPMTATGKVRKQDLQALA 563
|
Length = 567 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 221 bits (564), Expect = 3e-65
Identities = 151/518 (29%), Positives = 244/518 (47%), Gaps = 35/518 (6%)
Query: 52 KHNGRTALV-DSLSG--YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPV 108
+ +TAL+ +S G SY +L + A+ L + GI +GD V L L N F
Sbjct: 19 VYGHKTALIFESSGGVVRRYSYLELNEEINRTAN-LFYSLGIRKGDKVALHLDNCPEFIF 77
Query: 109 IFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTK---ISLAFT-IYENVDKLRSWGTTPV 164
+ L +GAI++P+N L E + + S F +Y +++ TP+
Sbjct: 78 CWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYR---QIQQEDATPL 134
Query: 165 VAVPENLVNDFKEGRFSDFHKLIAGK-FDLVERPVIRQQDTAAILYSSGTTGASKGAELT 223
+ V + S F +L A + L P + DTA IL++SGTT KG +T
Sbjct: 135 RHICLTRVALPADDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVIT 194
Query: 224 HGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRF 283
H N F + ++ L + V+L V+P FHI A+ S G + V++ ++
Sbjct: 195 HYNL-----RFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKY 249
Query: 284 EASEMLKVIDKY--GVTH-FPVVPPILMALTKAA--KGLCGNSLKSLKQVSSGAAPANSK 338
A + KY +T P++ LM +A + C L++V ++ +
Sbjct: 250 SARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHC------LREVMFYLNLSDQE 303
Query: 339 IIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGC 398
+ F F V + YGMTE T VG G ++ S+G +A++ D +
Sbjct: 304 K-DAFEERF-GVRLLTSYGMTE-TIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRD-DHNR 359
Query: 399 FLPPGSTGELWLRG-PG--TMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDR 455
LP G GE+ ++G PG KEY + AT ++ +GWLHTGD Y DE+G+ Y VDR
Sbjct: 360 PLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDR 419
Query: 456 LKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAA 515
+IK G +S +LE ++ HP+I D+ V G D + E AFVV +G TL+E
Sbjct: 420 RCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEE 479
Query: 516 VIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
+ Q +A +K + K +P++ +GK++++ L+
Sbjct: 480 FFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517
|
Length = 517 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 6e-64
Identities = 154/511 (30%), Positives = 255/511 (49%), Gaps = 31/511 (6%)
Query: 65 GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMN 124
G I++ V+ A+ L+ G+ +GD V ++LPN + + L G IV+ N
Sbjct: 47 GKDITFSVFHDKVKRFANYLQK-LGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTN 105
Query: 125 PLLSVSEIKKQ-------VTLCKTKISLAFTIYENVDKLRSWGTTPV---VAVPENLVND 174
PL + E++ Q V LC + T ++ K+ T + + P+NL+
Sbjct: 106 PLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYP 165
Query: 175 FKEGRFSDFHKLIAGKFDL-------------VERPVIRQQDTAAILYSSGTTGASKGAE 221
F + + S+ ++ + VE P + D A + Y+ GTTG KG
Sbjct: 166 FVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVM 225
Query: 222 LTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMR 281
LTH N ++ + V++ Y E V L VLP FH+YG++ + G +V++
Sbjct: 226 LTHKNLVSNTLMGVQW---LYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIP 282
Query: 282 RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIE 341
+F+ + + I K+ VT FP P I +AL + L + S++ SG+AP ++ E
Sbjct: 283 KFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPL-LKEYDISSIRACISGSAPLPVEVQE 341
Query: 342 DFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLP 401
F ++GYG+TES+ V F +K S+G+ P+ +A ++ G LP
Sbjct: 342 KF-ETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPG-SIGVPWPDTEAMIMSLETGEALP 399
Query: 402 PGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIK 461
PG GE+ ++GP MK Y N + T + + ++GWLHTGD+ Y DEDG+ Y+ DR K++I
Sbjct: 400 PGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDMIV 458
Query: 462 YNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLA 521
+G+ + P ++E VL H ++ +V G D GE AFVV ++G+ +E + +
Sbjct: 459 ASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFAR 518
Query: 522 QRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
+ +A YK + F +PK+ GK+LRR L
Sbjct: 519 KYLAAYKVPKVYEFRDELPKTTVGKILRRVL 549
|
Length = 563 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 214 bits (546), Expect = 2e-63
Identities = 135/496 (27%), Positives = 210/496 (42%), Gaps = 77/496 (15%)
Query: 69 SYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLS 128
++ +L A+ L+ G+ +GD V +LLP + L + LGA+ IP L
Sbjct: 2 TFAELKEESDRAANFLKDL-GVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60
Query: 129 VSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIA 188
+I+ +L G +V +
Sbjct: 61 PKDIR--------------------YRLERAGARAIVTSAD------------------- 81
Query: 189 GKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSE 248
D A + ++SGTTG K TH L + + L +
Sbjct: 82 --------------DPALLYFTSGTTGLPKMVLHTHS-----YPLGHLVTGAYWLDLRPD 122
Query: 249 AVFLAVLPMFHIYGLSLFALGLLSLGPSVVV--MRRFEASEMLKVIDKYGVTHFPVVPPI 306
+ + G LG +V V RRF+A L+++++YGVT F P
Sbjct: 123 DLHWTIADPGWAKGAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTA 182
Query: 307 LMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGT 366
L + L L+ V S P N ++I+ + A + GYG TE+ +
Sbjct: 183 YRML--LQQDLSSYDFSHLRHVVSAGEPLNPEVIDWWRAAT-GLPIRDGYGQTETGLLVA 239
Query: 367 RGFNTKKFS-KYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWL----RGPGTMKEYIN 421
N K S+G AP + ++D G LPPG G++ + R PG + Y+
Sbjct: 240 ---NFPGMEVKPGSMGRPAPGYRVAIID-DEGNELPPGEEGDIAVRVKPRPPGLFRGYLK 295
Query: 422 NADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPE 481
+ + T +TI + W TGD A DEDGY + V R +VIK +GY+I P ++E+ LI HP
Sbjct: 296 DPEKTEATI-RGDWYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPA 354
Query: 482 ILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAV---IDYLAQRVAPYKKVRRVVFTKS 538
+ + AV G+ D V GE+ AFVV G +E +++ +R APYK R + F +
Sbjct: 355 VAEAAVVGSPDPVRGEVVKAFVVLAPGYQPSEELAKELQEHVKKRTAPYKYPREIEFVEE 414
Query: 539 IPKSAAGKVLRRELRK 554
+PK+ +GK+ R ELR
Sbjct: 415 LPKTVSGKIRRVELRA 430
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 2e-62
Identities = 117/437 (26%), Positives = 179/437 (40%), Gaps = 88/437 (20%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPL 126
+I++ +L V+ +A+GL G+ GD V +L N + + LA+L GA+ +P+ P
Sbjct: 5 TITWAELAERVRRLAAGLIAL-GVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63
Query: 127 LSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKL 186
S E+ + + V E+
Sbjct: 64 SSPEEVAYILNDSGAR----------------------VVFVED---------------- 85
Query: 187 IAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLS 246
+P D A ++Y+SGTTG KG LTH N +A + LS
Sbjct: 86 ---------KP----DDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIP-----LS 127
Query: 247 SEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPI 306
L+ LP+ H++ L LS G V E +L+ + + T F VP +
Sbjct: 128 PGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAESPET--LLEDLREVRPTVFFAVPRV 185
Query: 307 L-------MALTKAAKGLCGN------SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFI 353
A AA L L+ SG AP +++E F + +
Sbjct: 186 WEKIYAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFFRAL--GIPIL 243
Query: 354 QGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP 413
+GYG+TE++ V T N + +VG P ++ ++ + GE+ +RGP
Sbjct: 244 EGYGLTETSGVAT--VNRPGDIRIGTVGKPLPGVEVRIAE-----------DGEILVRGP 290
Query: 414 GTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKY-NGYQISPADL 472
MK Y N +AT +D++GWLHTGDI DEDG+L I DR K++I G I+P +
Sbjct: 291 NVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPI 350
Query: 473 ETVLICHPEILDVAVTG 489
E L P I V G
Sbjct: 351 ENALKASPYISQAVVVG 367
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 210 bits (538), Expect = 1e-61
Identities = 150/509 (29%), Positives = 241/509 (47%), Gaps = 44/509 (8%)
Query: 64 SGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPM 123
SG ++Y +L +A GLR G+ +GD V +LL N+ F ++ A G P+
Sbjct: 8 SGEVVTYGELEARSNRLAHGLRAL-GLREGDVVAILLENNPEFFEVYWAARRSGLYYTPI 66
Query: 124 NPLLSVSEIKKQVTLCKTK---ISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRF 180
N L+ +EI V K +S A D VP LV F
Sbjct: 67 NWHLTAAEIAYIVDDSGAKVLIVSAAL-----ADTAAELAAELPAGVPLLLVVAGPVPGF 121
Query: 181 SDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKG--AELTHGNFIAAVELFVRFE 238
+ + +A + D P+ + A +LYSSGTTG KG L + A + +
Sbjct: 122 RSYEEALAAQPD---TPIADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALL 178
Query: 239 ASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVT 298
Y ++V+L+ P++H F + L+LG +VVVM +F+A E L +I++Y VT
Sbjct: 179 GFGM-YGGPDSVYLSPAPLYHT-APLRFGMSALALGGTVVVMEKFDAEEALALIERYRVT 236
Query: 299 HFPVVPPI---LMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIE---DFVGAFPHVDF 352
H +VP + ++ L + + + SL+ AAP ++ D+ G P +
Sbjct: 237 HSQLVPTMFVRMLKLPEEVRA--RYDVSSLRVAIHAAAPCPVEVKRAMIDWWG--PIIH- 291
Query: 353 IQGYGMTE---STAVGTRGFNTKKFSKYFSVG--LLAPNIQAKVVDWVNGCFLPPGSTGE 407
+ Y +E T + + + S VG +L + +++D +G LPPG G
Sbjct: 292 -EYYASSEGGGVTVITSEDWLAHPGS----VGKAVLG---EVRILD-EDGNELPPGEIGT 342
Query: 408 LWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQI 467
++ G EY N+ + T + + GW+ GD+ Y DEDGYLY+ DR ++I G I
Sbjct: 343 VYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNI 402
Query: 468 SPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEA---AVIDYLAQRV 524
P ++E +L+ HP++ DVAV G D+ +GE A V DG+ +A +I +L R+
Sbjct: 403 YPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRL 462
Query: 525 APYKKVRRVVFTKSIPKSAAGKVLRRELR 553
A YK R + F +P++ GK+ +R LR
Sbjct: 463 AHYKCPRSIDFEDELPRTPTGKLYKRRLR 491
|
Length = 502 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 2e-61
Identities = 140/501 (27%), Positives = 234/501 (46%), Gaps = 29/501 (5%)
Query: 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
R ALV ISY + + A+G+ H GI QGD V LL+ NS F + A Y
Sbjct: 18 RAALV--YRDQEISYAEFHQRILQ-AAGMLHARGIGQGDVVALLMKNSAAFLELAFAASY 74
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDF 175
LGA+ +P+N L+ E+ + K+ L + E D + + T +V
Sbjct: 75 LGAVFLPINYRLAADEVAYILGDAGAKLLL---VDEEFDAIVALETPKIV---------I 122
Query: 176 KEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFV 235
+D +L G ++ + + D ++Y+SGTT KG ++GN +
Sbjct: 123 DAAAQADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNL-----HWK 177
Query: 236 RFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKY 295
+ L++ L V P++H+ L + +L +G ++ + R F+ +L I+++
Sbjct: 178 SIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERH 237
Query: 296 GVT---HFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDF 352
+T PV+ ++ + + L SL G I DF F +
Sbjct: 238 RLTCAWMAPVMLSRVLTVPDRDR----FDLDSLAWCIGGGEKTPESRIRDFTRVFTRARY 293
Query: 353 IQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG 412
I YG+TE+ + T ++ K S G +++ ++ D G +LPP GE+ +RG
Sbjct: 294 IDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRG 352
Query: 413 PGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADL 472
P K Y + + T W +GD+ Y DE+G+LY+ DR K++I G I+ +++
Sbjct: 353 PKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEV 411
Query: 473 ETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRR 532
E V+ PE+ + AV G D GE A VV G+TLT A+ + QR+A +K R+
Sbjct: 412 ERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQRLASFKVPRQ 471
Query: 533 VVFTKSIPKSAAGKVLRRELR 553
+ +P++ +GKVL+R LR
Sbjct: 472 LKVRDELPRNPSGKVLKRVLR 492
|
Length = 497 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 3e-61
Identities = 150/535 (28%), Positives = 230/535 (42%), Gaps = 73/535 (13%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA----IVIP 122
+ +Y +L V A+ L H G+ GD V LLPN P AL G I P
Sbjct: 58 TWTYAELLADVTRTAN-LLHSLGVGPGDVVAFLLPNL---PETHFALW--GGEAAGIANP 111
Query: 123 MNPLLSVSEIKKQVTLCKTKISLAF-----------------------TIYENVDKLRSW 159
+NPLL +I + + K+ + T+ E VD R
Sbjct: 112 INPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVE-VDLARYL 170
Query: 160 GTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFD--LVERPVIRQQDTAAILYSSGTTGAS 217
+AVP L+ R DF +A + L I D AA ++ GTTG
Sbjct: 171 PGPKRLAVP--LIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMP 228
Query: 218 KGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSV 277
K A+ THGN +A L + L LP+FH+ L + L L+ G V
Sbjct: 229 KLAQHTHGNEVANAWL-----GALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHV 283
Query: 278 V-----------VMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLK 326
V V+ F K++++Y + VP + AL + G+ + SL+
Sbjct: 284 VLATPQGYRGPGVIANF-----WKIVERYRINFLSGVPTVYAALLQVPVD--GHDISSLR 336
Query: 327 QVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPN 386
GAAP ++ F A V ++GYG+TE+T V + + + SVGL P
Sbjct: 337 YALCGAAPLPVEVFRRFEAA-TGVRIVEGYGLTEATCVSSVNPPDGE-RRIGSVGLRLPY 394
Query: 387 IQAKVV------DWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGD 440
+ +VV ++ C G L + GP Y+ A ++ +GWL+TGD
Sbjct: 395 QRVRVVILDDAGRYLRDC--AVDEVGVLCIAGPNVFSGYLEAAHNKGLWLE-DGWLNTGD 451
Query: 441 IAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPV 500
+ D DGY ++ R K++I G+ I PA +E L+ HP + A G D GE+PV
Sbjct: 452 LGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPV 511
Query: 501 AFVVRRDGSTLTEAAVIDYLAQRVAPYKKV-RRVVFTKSIPKSAAGKVLRRELRK 554
A+V + G++ TEA ++ + +A V + V ++PK+A GK+ + LR+
Sbjct: 512 AYVQLKPGASATEAELLAFARDHIAERAAVPKHVRILDALPKTAVGKIFKPALRR 566
|
Length = 632 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 2e-60
Identities = 115/369 (31%), Positives = 176/369 (47%), Gaps = 31/369 (8%)
Query: 201 QQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHI 260
D AA ++ GTTGA K A +H N +A + A+ L V L LP+FH+
Sbjct: 1 PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWM-----AALLSGLGPGDVLLNGLPLFHV 55
Query: 261 YGLSLFALGLLSLGPSVV-----------VMRRFEASEMLKVIDKYGVTHFPVVPPILMA 309
G + L L+ G +VV V+ F K++++Y VT VP +L A
Sbjct: 56 GGAIVTGLAPLARGATVVLPTPSGFRNPAVVANF-----WKIVERYRVTLLSAVPTVLAA 110
Query: 310 LTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGF 369
L + G + SL+ +GAAP ++ F A V ++GYGMTE T V
Sbjct: 111 LLQVPLG--DADISSLRYALTGAAPLPVEVARRFE-AVTGVPVVEGYGMTEGTGVSAINP 167
Query: 370 NTKKFSKYFSVGLLAPNIQAKVV----DWVNGCFLPPGSTGELWLRGPGTMKEYINNADA 425
+ SVGL P + +V G PG G L +RGP Y+N+A
Sbjct: 168 RGGP-RRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHN 226
Query: 426 TMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDV 485
++GWL+TGD+ D DGYL++ R K++I G+ I P +E L+ HP +
Sbjct: 227 A-GARLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALA 285
Query: 486 AVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFT-KSIPKSAA 544
A G D GE+PVA+V + G+T+TE ++ ++ R+ V + ++ ++P +A
Sbjct: 286 AAVGRPDAYAGELPVAYVQLKPGATVTEGELLAFVKARIPERAAVPKAIYIIDALPLTAV 345
Query: 545 GKVLRRELR 553
GK+ + LR
Sbjct: 346 GKIFKPRLR 354
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 203 bits (520), Expect = 3e-59
Identities = 140/513 (27%), Positives = 221/513 (43%), Gaps = 46/513 (8%)
Query: 61 DSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIV 120
DS G S++Y +L L S+A +G+ + ++LP+S+ + LALL G +
Sbjct: 2 DSTGG-SLTYRKL--LTASLALSRLIKKLTKEGENIGIMLPSSVAGALANLALLLAGKVP 58
Query: 121 IPMNPLLSVSEIKKQVTLCKTKI---SLAFTIYENVDKLRSWGTTPVVAVPENL-VNDFK 176
+ +N ++ K S AF ++KL+ G ++ + + D +
Sbjct: 59 VMLNFTAGEEGLRSACKQAGIKTVITSRAF-----LEKLKLEGLVVLLEGVRIVYLEDLR 113
Query: 177 EGRFSDFHKLIA---GKF--DLVERPVIRQQ--DTAAILYSSGTTGASKGAELTHGNFIA 229
+ S KL A K L+ + + D A IL++SG+ G KG L+H N +A
Sbjct: 114 -AKISKADKLKAFLAAKLPPALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLA 172
Query: 230 AVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEAS--- 286
++ + + L++E V L LP+FH +GL++ L L G VV + +
Sbjct: 173 NID-----QIAAVIDLNTEDVLLGALPLFHAFGLTVTLLLPLLTGLRVV----YYPNPLD 223
Query: 287 --EMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFV 344
++ ++I Y T P L + A SL+ V +GA E F
Sbjct: 224 AKKIAELIRDYKATILCGTPTFLRGYARNAHPED---FSSLRLVVAGAEKLPEATRELFE 280
Query: 345 GAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGS 404
F + ++GYG TE + V + NT +K +VG P I+ ++V LP G
Sbjct: 281 EKF-GIRILEGYGATECSPVIS--VNTPMGNKPGTVGRPLPGIEVRIVSPETHEELPIGE 337
Query: 405 TGELWLRGPGTMKEYINNADAT-MSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYN 463
G L +RGP M Y+NN + T + +GW TGDI DEDG+L IV RLK K
Sbjct: 338 GGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIG 397
Query: 464 GYQISPADLETVLICH-PEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQ 522
G +S +E +L PE A D+ GE V L + L +
Sbjct: 398 GEMVSLTAVEELLSEILPEDSLHAAVEVPDEKKGEKIVLLT---TTEDLDPEELNAILRE 454
Query: 523 R-VAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
+ R+++ IP +GK R L+K
Sbjct: 455 AGLPNLAVPRKILHVDEIPLLGSGKTDYRGLKK 487
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 5e-59
Identities = 153/524 (29%), Positives = 236/524 (45%), Gaps = 34/524 (6%)
Query: 55 GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114
R ALV ++ QL V +A GL G+ GD V + PN + + A
Sbjct: 33 DREALVVRHQALRYTWRQLADAVDRLARGLLA-LGVQPGDRVGIWAPNCAEWLLTQFATA 91
Query: 115 YLGAIVIPMNPLLSVSEIKKQVTL--CKTKISL-AFTIYENVDKLRSWGTTPVVAVPENL 171
+GAI++ +NP SE++ + + I AF + L+ P L
Sbjct: 92 RIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGAL 151
Query: 172 VN-DFKEGR------------FSDFHKLIA-----GKFDLVERPV-IRQQDTAAILYSSG 212
E R F +H+L A + L ER + + D I Y+SG
Sbjct: 152 ACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSG 211
Query: 213 TTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLS 272
TTG KGA L+H N I FV ++ L+ +P++H +G+ L LG ++
Sbjct: 212 TTGFPKGATLSHHN-ILNNGYFV----AESLGLTEHDRLCVPVPLYHCFGMVLANLGCMT 266
Query: 273 LGPSVVV-MRRFEASEMLKVIDKYGVTHFPVVPPILMA-LTKAAKGLCGNSLKSLKQVSS 330
+G +V F+ L+ +++ T VP + +A L +G L SL+
Sbjct: 267 VGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRG--NFDLSSLRTGIM 324
Query: 331 GAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYF-SVGLLAPNIQA 389
AP +++ + + YGMTE++ V + + +VG P+++
Sbjct: 325 AGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEV 384
Query: 390 KVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGY 449
KVVD +G +P G GEL RG MK Y NN +AT +ID++GW+HTGD+A DE GY
Sbjct: 385 KVVD-PDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGY 443
Query: 450 LYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS 509
+ IV R K++I G I P ++E L HP + DV V G D+ GE VA+V G
Sbjct: 444 VRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGH 503
Query: 510 TLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
+E + ++ R+A +K R F P + GKV + +R
Sbjct: 504 AASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMR 547
|
Length = 558 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 1e-58
Identities = 147/522 (28%), Positives = 245/522 (46%), Gaps = 42/522 (8%)
Query: 65 GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMN 124
G ++SY +L + A+ L+ H + GD + + +PN + +P+ L G IV+ N
Sbjct: 47 GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNTN 106
Query: 125 PLLSVSEIKKQVTLCKTKISLAFTIYEN----------------------VDKLRSWGTT 162
PL + E++ Q + + ++ + + W
Sbjct: 107 PLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVN 166
Query: 163 PVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAIL-YSSGTTGASKGAE 221
VV + +V + + F + + L +PV D A+L Y+ GTTG +KGA
Sbjct: 167 TVVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAM 226
Query: 222 LTHGNFIAAVELFVRFEASQYE------YLSSEAVFLAVLPMFHIYGLSLFALGLLSLGP 275
LTHGN +A + L VR SQ + V +A LP++HIY + + ++ G
Sbjct: 227 LTHGNLVANM-LQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGN 285
Query: 276 -SVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAA--KGLCGNSLKSLKQVSSGA 332
+V++ + +K + K+ + + + +AL K L ++LK +
Sbjct: 286 HNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTAL 345
Query: 333 APANSKIIEDFVGAFPHVDFIQGYGMTESTAVG-TRGFNTKKFSKYFSVGLLAPNIQAKV 391
A ++ E G ++GYG+TE++ V T + ++ +VG+ P KV
Sbjct: 346 VKATAERWEQLTGC----TIVEGYGLTETSPVASTNPYGEL--ARLGTVGIPVPGTALKV 399
Query: 392 VDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLY 451
+D +G LP G GEL ++GP MK Y +AT +D EGW TGDIA D DG++
Sbjct: 400 ID-DDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVR 458
Query: 452 IVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTL 511
IVDR K++I +G+ + P ++E V++ HP++ + A G D+ GE FVV RD L
Sbjct: 459 IVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPG-L 517
Query: 512 TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
+ + Y + YK + +V S+P + GK+LRRELR
Sbjct: 518 SVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELR 559
|
Length = 562 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 1e-58
Identities = 160/558 (28%), Positives = 272/558 (48%), Gaps = 56/558 (10%)
Query: 28 SKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHH 87
S++PS+ LL+ +SF ++ R A + G +I+Y +L L +++A+ L+
Sbjct: 20 SQYPSLA-----DLLE-ESF---RQYADRPAFI--CMGKAITYGELDELSRALAAWLQSR 68
Query: 88 FGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAF 147
G+++G V +++PN + +PV A+L G +V+ +NPL + E++ Q+ + A
Sbjct: 69 -GLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAE---AI 124
Query: 148 TIYEN--------VDK----------------LRSWGTTPVVAVPENLVNDFK---EGRF 180
+ EN + K + VV + +V + RF
Sbjct: 125 VVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPGHVRF 184
Query: 181 SDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAV---ELFVRF 237
+D L G + + D A + Y+ GTTG SKGA L H N +A V E +++
Sbjct: 185 ND--ALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQ- 241
Query: 238 EASQYEYLSSEAVFLAVLPMFHIYGLSL-FALGLLSLGPSVVVMRRFEASEMLKVIDKYG 296
A + + + F+ LP++HI+ L++ LG+ + G ++++ + +K + KY
Sbjct: 242 PAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQ 301
Query: 297 VTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGY 356
V FP V + AL L V++G A + + + +GY
Sbjct: 302 VHIFPAVNTLYNALLNNP-DFDKLDFSKLI-VANGGGMAVQRPVAERWLEMTGCPITEGY 359
Query: 357 GMTESTAVGT-RGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGT 415
G++E++ V T + +FS ++GL P+ + + D +G LP G GE+ +RGP
Sbjct: 360 GLSETSPVATCNPVDATEFSG--TIGLPLPSTEVSIRD-DDGNDLPLGEPGEICIRGPQV 416
Query: 416 MKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETV 475
M Y N D T + +G+ TGD+ DE GY IVDR K++I +G+ + P ++E V
Sbjct: 417 MAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEV 476
Query: 476 LICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVF 535
+ HP +L+VA G D+ GE FVV++D LTE V + +R+ YK+ + V F
Sbjct: 477 VASHPGVLEVAAVGVPDEHSGEAVKLFVVKKD-PALTEEDVKAFCKERLTNYKRPKFVEF 535
Query: 536 TKSIPKSAAGKVLRRELR 553
+PK+ GK+LRRELR
Sbjct: 536 RTELPKTNVGKILRRELR 553
|
Length = 557 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 202 bits (515), Expect = 5e-58
Identities = 146/543 (26%), Positives = 237/543 (43%), Gaps = 73/543 (13%)
Query: 52 KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
+ A+VD+ G S +Y L +A+ L GI GD V LP F +I+L
Sbjct: 35 AMPDKIAVVDNH-GASYTYSALDHAASRLANWLLAK-GIEPGDRVAFQLPGWCEFTIIYL 92
Query: 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYEN------------------- 152
A L +GA+ +P+ P +E+ + C+ K+ A T+++
Sbjct: 93 ACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQ 152
Query: 153 ---VDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILY 209
VDKL ++ ++ ++IA L + AA+L+
Sbjct: 153 IVGVDKLAPATSSLSLS------------------QIIADYEPLTTAITTHGDELAAVLF 194
Query: 210 SSGTTGASKGAELTHGNFIAAVELFV-RFEASQYEYLSSEAVFLAVLPMFHIYGLSLFAL 268
+SGT G KG LTH N +A+ + R L+ + VF+ P+ H G F
Sbjct: 195 TSGTEGLPKGVMLTHNNILASERAYCARLN------LTWQDVFMMPAPLGHATG---FLH 245
Query: 269 GLLS---LGPSVVVMRRFEASEMLKVIDKYGVT----HFPVVPPILMALTKAAKGLCGNS 321
G+ + +G V++ F L ++++ T P + +L L K
Sbjct: 246 GVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ-----PAD 300
Query: 322 LKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTEST--AVGTRGFNTKKFSKYFS 379
L +L+ G K+ + + + YG TES+ AV +F
Sbjct: 301 LSALRFFLCGGTTIPKKVARECQQR--GIKLLSVYGSTESSPHAVVNLDDPLSRFMHT-- 356
Query: 380 VGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTG 439
G A ++ KVVD LPPG GE RGP Y++ + T +D+EGW ++G
Sbjct: 357 DGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSG 415
Query: 440 DIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIP 499
D+ DE GY+ I R K++I G IS ++E +L+ HP+I D V D+ LGE
Sbjct: 416 DLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERS 475
Query: 500 VAFVVRRDG-STLTEAAVIDYLA-QRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLT 557
A+VV + +LT V+ + + +RVA YK +V +P++A+GK+ + LRK +
Sbjct: 476 CAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIM 535
Query: 558 SKL 560
+L
Sbjct: 536 RRL 538
|
Length = 547 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 1e-57
Identities = 151/514 (29%), Positives = 245/514 (47%), Gaps = 31/514 (6%)
Query: 65 GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMN 124
G +I+Y + LV+ A+ L + +GD V L++PN + +P+ +L G V+ +N
Sbjct: 48 GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVN 107
Query: 125 PLLSVSEIKKQV------------TLCKT-KISLAFTIYENV------DKL---RSWGTT 162
PL + E+K Q+ T + +A T + V D L ++
Sbjct: 108 PLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVN 167
Query: 163 PVVAVPENLVNDFKEGRFSDFHKLIA-GKFDLVERPVIRQQDTAAILYSSGTTGASKGAE 221
VV + LV +++ F + +A G+ + I D A + Y+ GTTG +KGA
Sbjct: 168 FVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAM 227
Query: 222 LTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGP-SVVVM 280
LTH N +A ++ ++ A + V + LP++HI+ L+ L + +G + ++
Sbjct: 228 LTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLIS 287
Query: 281 RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKII 340
+ +K + K T F V + L G SLK G +
Sbjct: 288 NPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTP-GFDQIDFSSLKMTLGGGMAVQRSVA 346
Query: 341 EDFVGAFPHVDFIQGYGMTE-STAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCF 399
E + + ++ YG+TE S A K+++ S+GL P+ A + D G
Sbjct: 347 ERW-KQVTGLTLVEAYGLTETSPAACINPLTLKEYNG--SIGLPIPSTDACIKD-DAGTV 402
Query: 400 LPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEV 459
L G GEL ++GP MK Y + T +D +GWLHTGDIA DE G++YIVDR K++
Sbjct: 403 LAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDM 462
Query: 460 IKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDY 519
I +G+ + P ++E V+ P +L+VA G D+ GEI +V++D LT V +
Sbjct: 463 ILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKD-PALTAEDVKAH 521
Query: 520 LAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
+ YK+ R + F K +PK+ GK+LRRELR
Sbjct: 522 ARANLTGYKQPRIIEFRKELPKTNVGKILRRELR 555
|
Length = 560 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 197 bits (502), Expect = 4e-57
Identities = 137/497 (27%), Positives = 208/497 (41%), Gaps = 80/497 (16%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPL 126
S++Y +L L A+ LR G+S GD VLLLLP+S FLA L GA
Sbjct: 10 SLTYRELHDLANRFANVLRAL-GVSPGDRVLLLLPDSPELVAAFLACLKAGA-------- 60
Query: 127 LSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKL 186
V P D +
Sbjct: 61 -----------------------------------VAVALNPLLTPQD---------LEH 76
Query: 187 IAGKFDLVERPVIRQQDTAA-ILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYL 245
I D ++ + D A LY+SGTTG KG H + + E F R + L
Sbjct: 77 ILD--DSGAALLVTEADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFAR----ELLGL 130
Query: 246 SSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMR-RFEASEMLKVIDKYGVTHFPVVP 304
+ +F YGL L L G S V++ +L ++ ++ T VP
Sbjct: 131 QPGDRIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVP 190
Query: 305 PILMALTKAAKGL--CGNSLKSLKQVSSGAA-PANSKIIEDFVGAFPHVDFIQGYGMTES 361
+ AL ++ G S++ VS+G A PA + + ++ + G G TE
Sbjct: 191 ALYRALLESGAGSAPLFRSVR--LCVSAGEALPAG---LAERWAEATGIEILDGIGSTEV 245
Query: 362 TAVGTRGF--NTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEY 419
+ F N ++ + G P +A++VD +G +P G+ G+LW+RGP Y
Sbjct: 246 LHI----FISNRPGAARPGTTGRPVPGYEARLVD-ESGREVPAGTVGDLWVRGPSLAPGY 300
Query: 420 INNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICH 479
N + T T+ ++GWL TGD D DG+ R ++IK +G +SP ++E L H
Sbjct: 301 WNLPEKTQRTL-RDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEH 359
Query: 480 PEILDVAVTGAMDKVLGEIPVAFVVRRDGST---LTEAAVIDYLAQRVAPYKKVRRVVFT 536
P + + AV D+ AFVV R G L E + +L +R+APYK R++ F
Sbjct: 360 PAVAEAAVVAVPDEDGLVRLKAFVVPRPGEAIQQLLERDLHRFLRERLAPYKCPRQIEFL 419
Query: 537 KSIPKSAAGKVLRRELR 553
++P++A GK+ R LR
Sbjct: 420 DTLPRTATGKLQRFRLR 436
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 7e-57
Identities = 123/497 (24%), Positives = 220/497 (44%), Gaps = 74/497 (14%)
Query: 69 SYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLS 128
++ L +A L+ GI G V L+ NSI ++ A L LGA + +N L+
Sbjct: 1 TWQDLDCEAAHLAKALKAQ-GIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLT 59
Query: 129 -------VSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFS 181
+ ++ Q+ L + + +++D++ + G +L F
Sbjct: 60 ENERTNQLEDLDVQLLLTDSLLEEKDFQADSLDRIEAAGRYET-----SLSASFN----- 109
Query: 182 DFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGN-FIAAVELFVRFEAS 240
A ++++SGTTG K T N + +AV +
Sbjct: 110 -------------------MDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFT 150
Query: 241 QYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHF 300
+ + +L LP++HI GLS+ L+ G ++ ++ +F +++L++I VTH
Sbjct: 151 EDD------NWLLSLPLYHISGLSILFRWLIE-GATLRIVDKF--NQLLEMIANERVTHI 201
Query: 301 PVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTE 360
+VP L L G ++L+++ G + + +IE+ + YGMTE
Sbjct: 202 SLVPTQLNRLLDE-----GGHNENLRKILLGGSAIPAPLIEE--AQQYGLPIYLSYGMTE 254
Query: 361 S----TAVGTRGFNTKKFSKYFSVGLLAPNIQAKV-VDWVNGCFLPPGSTGELWLRGPGT 415
+ T + + VG + K+ VD G GE+ ++G
Sbjct: 255 TCSQVTTATPEMLHARP-----DVGRPLAGREIKIKVDNKEG-------HGEIMVKGANL 302
Query: 416 MKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETV 475
MK Y+ + T +++GW +TGDI D +G+LY++ R ++I G I P ++ETV
Sbjct: 303 MKGYLYQGELT-PAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETV 361
Query: 476 LICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVF 535
L HP I + V D G++PVA++V S +++A +I YL +++A YK
Sbjct: 362 LYQHPGIQEAVVVPKPDAEWGQVPVAYIVSE--SDISQAKLIAYLTEKLAKYKVPIAFEK 419
Query: 536 TKSIPKSAAGKVLRREL 552
+P +A+GK+LR +L
Sbjct: 420 LDELPYNASGKILRNQL 436
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 9e-56
Identities = 151/510 (29%), Positives = 241/510 (47%), Gaps = 39/510 (7%)
Query: 68 ISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLL 127
I+Y +L + ++ A+ L G + +V L L N+ P+ F L GA V+ ++PL
Sbjct: 47 ITYTELEAMAETAAAALLRA-GYGKDASVALYLGNTPDHPINFFGALKAGARVVHLSPLD 105
Query: 128 SVSEIKKQVTLCKTKI------------SLAFTIYENVDKL-----RSWGT--TPVVAVP 168
+ +++ ++ +L F +D+L +WG TP +P
Sbjct: 106 GERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIP 165
Query: 169 ENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFI 228
D + ++DF + G E P + D A + Y+ GTTG KGA LTHGN
Sbjct: 166 A----DPRIVTYADF---VKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLT 218
Query: 229 AAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEM 288
+AV ++ + + VLP+FHIY L++ L L G + + +RF+ + +
Sbjct: 219 SAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAV 278
Query: 289 LKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPAN---SKIIEDFVG 345
+ I++ T FP VP + +AL L L SL + SG AP + E G
Sbjct: 279 FRDIEEKRATVFPGVPTMWIALA-NDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKTG 337
Query: 346 AFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGC-FLPPGS 404
+ G+GMTE+ + GT G + K S+GL+ P I+ VV + LPPG
Sbjct: 338 ----LKLKSGWGMTETCSPGT-GHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGE 392
Query: 405 TGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNG 464
GEL +RGP + Y N + + + +L TGDI Y D DGY ++VDR K++I G
Sbjct: 393 VGELRIRGPNVTRGYWNRPEESAEAFVGDRFL-TGDIGYMDTDGYFFLVDRKKDMIISGG 451
Query: 465 YQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGST-LTEAAVIDYLAQR 523
+ + P +E + HP + +V V G D+ GE AFV R G+ + + +LA +
Sbjct: 452 FNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLAGK 511
Query: 524 VAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
+ ++ V F +P++ GK+ R ELR
Sbjct: 512 LGKHELPVAVEFVDELPRTPVGKLSRHELR 541
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 1e-54
Identities = 142/516 (27%), Positives = 224/516 (43%), Gaps = 41/516 (7%)
Query: 52 KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
++ R ALV ++Y QL + G+ GDAV LL N +
Sbjct: 24 RYPDRPALVLG--DTRLTYGQLADRISRYIQAF-EALGLGTGDAVALLSLNRPEVLMAIG 80
Query: 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISL---------AFTIYENVDKLRSWGTT 162
A G ++PL S+ + + + A + V L+ T
Sbjct: 81 AAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLT- 139
Query: 163 PVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAEL 222
+ VP+ D A D A + Y+ GTTG KG
Sbjct: 140 -LGPVPD----------GVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMG 188
Query: 223 THGNFIA-AVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMR 281
TH + A +E ++ FL P+ H G F LL G +V+V+
Sbjct: 189 THRSIATMAQIQLAEWE------WPADPRFLMCTPLSHAGGA-FFLPTLL-RGGTVIVLA 240
Query: 282 RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIE 341
+F+ +E+L+ I++ +T +VP ++ AL L L SL+ V GA+P + +
Sbjct: 241 KFDPAEVLRAIEEQRITATFLVPTMIYALLDHP-DLRTRDLSSLETVYYGASPMSPVRLA 299
Query: 342 DFVGAFPHVDFIQGYGMTES----TAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNG 397
+ + F + F Q YG TE+ T + R + + S G P ++ ++D +G
Sbjct: 300 EAIERFGPI-FAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDG 357
Query: 398 CFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLK 457
+ G GE+ +RGP M Y N + T ++GWLHTGD+A DEDG+ YIVDR K
Sbjct: 358 REVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKK 416
Query: 458 EVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVI 517
++I G+ + P ++E VL HP + VAV G D+ GE A VV R G+ + A +
Sbjct: 417 DMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQ 476
Query: 518 DYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
++ +R ++V F S+P +A GK ++ LR
Sbjct: 477 AHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALR 512
|
Length = 524 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 7e-54
Identities = 152/534 (28%), Positives = 234/534 (43%), Gaps = 64/534 (11%)
Query: 56 RTALVD----SLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
+TA+ + + +Y +L LV VA GL G+ +GD V LPN F V++L
Sbjct: 40 KTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLAR-LGVGRGDVVSCQLPNWWEFTVLYL 98
Query: 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVD------KLRSWGTTPVV 165
A +GA++ P+ P+ E+ + ++K+ + + D +LR P +
Sbjct: 99 ACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLR-----PEL 153
Query: 166 AVPENLVNDFKEGRFSDFHKLIAGKF--------DLVERPVIRQQDTAAILYSSGTTGAS 217
++V +G S F L+ ++ R D ++Y+SGTTG
Sbjct: 154 PALRHVVVVGGDGADS-FEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEP 212
Query: 218 KGAELTHGNFIAA-VELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGL---LSL 273
KG T +A V R L ++ V L PM H G F GL + L
Sbjct: 213 KGVMHTANTLMANIVPYAERLG------LGADDVILMASPMAHQTG---FMYGLMMPVML 263
Query: 274 GPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAA 333
G + V+ ++ + ++I GVT P L LT+A K G + SL+ A
Sbjct: 264 GATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVK-ESGRPVSSLRTFLCAGA 322
Query: 334 PANSKIIEDFVGAFPHVDFIQGYGMTESTAVGT--------RGFNTKKFSKYFSVGLLAP 385
P ++E A + +GMTE+ AV R T G P
Sbjct: 323 PIPGALVERARAAL-GAKIVSAWGMTENGAVTLTKLDDPDERASTTD--------GCPLP 373
Query: 386 NIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFD 445
++ +VVD +G LP G G L +RG Y+ ++ D +GW TGD+A D
Sbjct: 374 GVEVRVVD-ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQ--LNGTDADGWFDTGDLARID 430
Query: 446 EDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVR 505
DGY+ I R K+VI G I ++E +L HP I VA+ D+ LGE AFVV
Sbjct: 431 ADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVP 490
Query: 506 RDGSTLTEAAVIDYL-AQRVAPYKKVRRVVFTKSIPKSAAGKV----LRRELRK 554
R G +L ++++L AQ+VA R+V ++P++ +GK+ LR LR
Sbjct: 491 RPGQSLDFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRG 544
|
Length = 547 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 2e-53
Identities = 145/545 (26%), Positives = 216/545 (39%), Gaps = 81/545 (14%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMN-P 125
+++Y +L +++A+ L+ + GD VLLL P + F F LY GAI +P P
Sbjct: 23 TLTYAELDRRARAIAARLQALG--APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPP 80
Query: 126 LLSVSEIKKQVTLCK-TKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFH 184
+ + + T + LR+ P + + D D
Sbjct: 81 RRLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAAD-------DLA 133
Query: 185 KLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVR-FEASQYE 243
L A + P D A + Y+SG+TGA KG +THGN +A + R F
Sbjct: 134 ALAAADW---RPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFG----- 185
Query: 244 YLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVM--RRFEASEM--LKVIDKYGVTH 299
L + V ++ LP++H GL L L G VV+M F + L+ I +Y T
Sbjct: 186 -LDPDDVGVSWLPLYHDMGLIGGLLQPLYAGFPVVLMSPLAFLRRPLRWLEAISRYRATV 244
Query: 300 FPVVPP---ILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAF------PHV 350
P L + L G L S + +GA P + +E F F P
Sbjct: 245 SGA-PNFAYDLCVRRVRDEQLAGLDLSSWRVAFNGAEPVRADTLERFAERFAPAGFRPEA 303
Query: 351 DFIQGYGMTEST-----AVGTRGFNTKKFSK--------------------YFSVGLLAP 385
F+ YG+ E+T G + + S G P
Sbjct: 304 -FLPCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLP 362
Query: 386 NIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT------MSTIDKEGWLHTG 439
+ ++VD LP G GE+W+RGP Y N +AT D+ GWL TG
Sbjct: 363 GHEVRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTG 422
Query: 440 DIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLE-TVLICHPEILDVAVTGAMDKVLGEI 498
D+ + DG LY+ RLK++I G P D+E TV HP + A GE
Sbjct: 423 DLGFLH-DGELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDGEE 481
Query: 499 PVAFV--VRRDGSTLTEAAVIDYLAQRVA-----PYKKVRRVVFTK--SIPKSAAGKVLR 549
+ V VRR G AA+ + + VA VV + ++PK+++GK+ R
Sbjct: 482 RLVVVAEVRRRGLPADLAALAEAIRAAVAREHGVA---PADVVLVRPGTLPKTSSGKIQR 538
Query: 550 RELRK 554
R R+
Sbjct: 539 RACRE 543
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 3e-53
Identities = 138/495 (27%), Positives = 221/495 (44%), Gaps = 35/495 (7%)
Query: 77 VQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQV 136
A GL G+ GD V LL+ N F A + LGA +P+N EI +
Sbjct: 21 AARAAGGLAA-LGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYIL 79
Query: 137 TLCKTKISLAFT--IYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFH-KLIAGKFDL 193
++ +A ++ L + T V P + + R S AG D
Sbjct: 80 EDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAY---RISPALLTPPAGAIDW 136
Query: 194 ---------VERPVIRQQDTAAILYSSGTTGASKG---AELTHGNFIAAVELFVRFEASQ 241
+ P + Q +++Y+SGTTG KG A T AA ++
Sbjct: 137 EGWLAQQEPYDGPPVPQ--PQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYG-- 192
Query: 242 YEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFP 301
L L P++H + + L LG +V+ RF+ E+L++I+++ +TH
Sbjct: 193 ---LKPGIRALLTGPLYH-SAPNAYGLRAGRLGGVLVLQPRFDPEELLQLIERHRITHMH 248
Query: 302 VVPPI---LMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGM 358
+VP + L+ L + + + SL+ V AAP + + + + V + YG
Sbjct: 249 MVPTMFIRLLKLPEEVRA--KYDVSSLRHVIHAAAPCPADVKRAMIEWWGPV-IYEYYGS 305
Query: 359 TESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKE 418
TES AV + S +VG AP + + VD +G LP G GE++ R G
Sbjct: 306 TESGAVTFAT-SEDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDF 363
Query: 419 YINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLIC 478
+N + ID+ G++ +GD+ Y D DGYL++ DR ++++ G I PA++E VL
Sbjct: 364 TYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHA 423
Query: 479 HPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKS 538
P + D AV G D GE +A V + G+TL EA + L R+A YK + +
Sbjct: 424 VPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKARLAGYKVPKHIEIMAE 483
Query: 539 IPKSAAGKVLRRELR 553
+P+ +GK+ +R LR
Sbjct: 484 LPREDSGKIFKRRLR 498
|
Length = 509 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 8e-53
Identities = 134/497 (26%), Positives = 209/497 (42%), Gaps = 76/497 (15%)
Query: 69 SYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLS 128
++ QL +A+ LR G+ +GD V + LP S + LA+ LGA+ +P++ L
Sbjct: 8 TFGQLKDASNRLANALREL-GVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFG 66
Query: 129 VSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIA 188
++ +LR G +V
Sbjct: 67 PD-------------AVEH-------RLRDSGARVLV----------------------- 83
Query: 189 GKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSE 248
+ D A ++Y+SGTTG KGA H + + E
Sbjct: 84 -----TDGS----DDPAILIYTSGTTGPPKGALHGHRVLLGHLPGV---ELYFELAPRPG 131
Query: 249 AVFLAVLPMFHIYGLSLFALGLLSLGPSVVV--MRRFEASEMLKVIDKYGVTHFPVVPPI 306
VF I GL L L G VV M+RF+ ++ +YGVT+ +PP
Sbjct: 132 DVFWTPADWAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTN-AFLPPT 190
Query: 307 LMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIE---DFVGAFPHVDFIQGYGMTESTA 363
+ + + L+ V+SG +++E D +G + + YG TE+
Sbjct: 191 ALKMMRRVGSERARYDLRLRAVASGGESLGEELLEWARDELGLTVN----EFYGQTEANL 246
Query: 364 VGTRGFNTKKFS-KYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLR--GPGTMKEYI 420
V G + S+G P + VVD G +PPG GE+ ++ P Y
Sbjct: 247 V--VGNCAALGPARPGSMGKPVPGHEVAVVD-DAGRPVPPGEVGEIAVKRPDPVMFLGYW 303
Query: 421 NNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHP 480
NN +AT + WL TGD+ D DGYL+ R +VIK +GY+I PA++E L+ HP
Sbjct: 304 NNPEATAAKF-AGDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHP 362
Query: 481 EILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEA---AVIDYLAQRVAPYKKVRRVVFTK 537
+L+ AV G D GEI AFVV +G ++ + + + R+A ++ R + F
Sbjct: 363 AVLEAAVVGVPDPERGEIVKAFVVLAEGVEPSDELATELQELVKSRLAAHEYPREIEFVD 422
Query: 538 SIPKSAAGKVLRRELRK 554
+P + GK+ RRELR+
Sbjct: 423 ELPMTTTGKIRRRELRR 439
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 3e-52
Identities = 130/528 (24%), Positives = 207/528 (39%), Gaps = 95/528 (17%)
Query: 68 ISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLL 127
I+Y +L+ V+++ASGL GI GD V + N + + LA+L LGA+ +P+
Sbjct: 46 ITYRELYERVRALASGLLSL-GIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTS 104
Query: 128 SVSEIK-----KQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPE-NLVNDFKEGRFS 181
+ ++ + + + + V + +V + + K
Sbjct: 105 TPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLE 164
Query: 182 DFHKLIAGKFDLV-----ERPVIRQ-QDTAAILYSSGTTGASKGAELTHGNFIAAVELFV 235
F F + R + D A I+Y+SGTTG KG LTH N +A V
Sbjct: 165 VFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGID 224
Query: 236 R--FEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVID 293
+ + L+ LP+ HI+ F GL G V V+ + + +L+ +
Sbjct: 225 EVLPPIGPGDRV------LSFLPLAHIFER-AFEGGLALYG-GVTVLFKEDPRTLLEDLK 276
Query: 294 KYGVTHFPVVP---------------------------PILMALTKAAKGLCGNSL---- 322
+ T VP + +A K ++ L G
Sbjct: 277 EVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWL 336
Query: 323 ----------------KSLKQVSSGAAPANSKIIEDF--VGAFPHVDFIQGYGMTESTAV 364
++ SG AP + +++ F +G + ++GYG+TE++AV
Sbjct: 337 LVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLG----IPILEGYGLTETSAV 392
Query: 365 GTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNAD 424
+ N +VG P I+ K+ D GE+ +RGP MK Y N +
Sbjct: 393 VS--VNPPDRFVLGTVGKPLPGIEVKIAD-----------DGEILVRGPNVMKGYYKNPE 439
Query: 425 ATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKY-NGYQISPADLETVLICHPEIL 483
AT ++GW TGD+ DEDGYL I R KE+IK NG I+P +E+ L P I
Sbjct: 440 ATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIE 499
Query: 484 DVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVR 531
+ V G DK VA +V D L + A + + R
Sbjct: 500 QICVVGD-DKKF---LVALIV-PDFDALEKWAESLNKVISASREELAR 542
|
Length = 613 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 4e-52
Identities = 120/358 (33%), Positives = 187/358 (52%), Gaps = 23/358 (6%)
Query: 202 QDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIY 261
A I+Y+SGTTG KG L+ IAA +L EA Q+ +++ V + LP+FH++
Sbjct: 128 DAPALIVYTSGTTGPPKGVVLSR-RAIAA-DLDALAEAWQW---TADDVLVHGLPLFHVH 182
Query: 262 GLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHF--PVVPPILMALTKAAKGLCG 319
GL L LG L +G V R + + + G +F P V + A +AA+ L G
Sbjct: 183 GLVLGVLGPLRIGNRFVHTGRPTPEAYAQALSEGGTLYFGVPTVWSRIAADPEAARALRG 242
Query: 320 NSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTES-TAVGTRGFNTKKFSKYF 378
L + SG+A + + H ++ YGMTE+ + TR ++
Sbjct: 243 ARL-----LVSGSAALPVPVFDRLAALTGH-RPVERYGMTETLITLSTRADGERRPG--- 293
Query: 379 SVGLLAPNIQAKVVDWVNGCFLP--PGSTGELWLRGPGTMKEYINNADATMSTIDKEGWL 436
VGL ++ ++VD +G +P + GEL +RGP Y+N DAT + +GW
Sbjct: 294 WVGLPLAGVETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWF 352
Query: 437 HTGDIAYFDEDGYLYIVDRLK-EVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVL 495
TGD+A D DG IV R ++IK GY+I ++ET L+ HP + + AV G D L
Sbjct: 353 RTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDL 412
Query: 496 GEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
G+ VA+VV D E +ID++AQ+++ +K+ R V F ++P++A GKVL+++L
Sbjct: 413 GQRIVAYVVGADDVAADE--LIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLL 468
|
Length = 471 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 185 bits (470), Expect = 4e-52
Identities = 150/527 (28%), Positives = 229/527 (43%), Gaps = 66/527 (12%)
Query: 50 SHKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVI 109
+ + ALVD G ++Y +L V+ VA+ L H G+ V ++ PNS+ +
Sbjct: 11 ATRAPDACALVDPARGLRLTYSELRARVEGVAARL-HARGVRPQQRVAVVAPNSVDAVIA 69
Query: 110 FLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPE 169
LAL LGA+ MNP L +EI + ++ T V +
Sbjct: 70 LLALHRLGAVPALMNPRLKPAEI--------------------AELIKRGEMTAAVIAVD 109
Query: 170 NLVNDFKEGRFSDFHKLIAGKFD----------LVERPVIRQQDTAAILYSSGTTGASKG 219
V D S L G +E P + A + Y+SGTTG KG
Sbjct: 110 AQVMDAIFQSGSGVRVLALGDLVGLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPKG 169
Query: 220 AELTHGNFIAAVELFVRFEASQYEY-LSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278
A + A E V F ++Q V L ++P++H+ G + L+L + V
Sbjct: 170 AVIPQ----RAAESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAALALDGTYV 225
Query: 279 VMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSK 338
V+ F+ ++ LK+I++ VT P L AL AA+G L SL+ V+ A
Sbjct: 226 VVEEFDPADALKLIEQERVTSLFATPTHLDALAAAAEG-APLKLDSLEHVTFAGATMPDA 284
Query: 339 IIEDFVGAFPHVDFIQGYGMTES--------TAVGTR---GFNTKKFSKYFSVGLLAPNI 387
++E V + + YG TE+ GT GF FS+ V +
Sbjct: 285 VLER-VNQHLPGEKVNIYGTTEAMNSLYMRDPRTGTEMRPGF----FSEVRIVRIGGSPD 339
Query: 388 QAKVVDWVNGCFLPPGSTGELWL-RGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDE 446
+A LP G GEL + T Y+N AT + ++GW T D+A D
Sbjct: 340 EA----------LPNGEEGELVVAAADATFTGYLNQPQATAEKL-QDGWYRTSDVAVVDP 388
Query: 447 DGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRR 506
G + I+ R+ ++I G I P+++E VL P + +V V G D+ G+ A VV R
Sbjct: 389 SGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVVPR 448
Query: 507 DGSTLTEAAVIDY-LAQRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
+G TL+ A+ + A +A +K+ RR F +PK+A KVLRR+L
Sbjct: 449 EGETLSADALDTFCRASELADFKRPRRYFFLDELPKNAMNKVLRRQL 495
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (468), Expect = 1e-51
Identities = 144/526 (27%), Positives = 235/526 (44%), Gaps = 46/526 (8%)
Query: 48 IFSHKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFP 107
I + + A++ + +G ++Y +L +A R G+ +GD V + + N++ +
Sbjct: 5 IHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSL-GLKRGDHVAIFMENNLRYL 63
Query: 108 VIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAV 167
+ A G +N L+ +E V + + +V + P V
Sbjct: 64 EVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALL-KQCP--GV 120
Query: 168 PENLVNDFKEG---RFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKG--AEL 222
LV D +G F + + +AG L P+ + +LYSSGTTG KG L
Sbjct: 121 RHRLVLD-GDGELEGFVGYAEAVAG---LPATPIADESLGTDMLYSSGTTGRPKGIKRPL 176
Query: 223 THGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGL-LSLGPSVVVMR 281
+ L F + + S+ V+L+ P++H A+ L + LG +V+VM
Sbjct: 177 PEQPPDTPLPLTA-FLQRLWGF-RSDMVYLSPAPLYH--SAPQRAVMLVIRLGGTVIVME 232
Query: 282 RFEASEMLKVIDKYGVTHFPVVPPI---LMALTKAAKGLCGNSLKSLKQVSSGAAPANSK 338
F+A + L +I++YGVTH +VP + ++ L + + L SL+ AAP +
Sbjct: 233 HFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRD--KYDLSSLEVAIHAAAPCPPQ 290
Query: 339 IIEDFV---GAFPHVDFIQGYGMTESTAVGTRGFNTKKF-SKYFSVG---LLAPNIQAKV 391
+ E + G H + Y TE +G +++++ + +VG +I
Sbjct: 291 VKEQMIDWWGPIIH----EYYAATE--GLGFTACDSEEWLAHPGTVGRAMFGDLHILDD- 343
Query: 392 VDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEG-WLHTGDIAYFDEDGYL 450
+G LPPG G +W G G EY+N+ T +G W GDI Y DEDGYL
Sbjct: 344 ----DGAELPPGEPGTIWFEG-GRPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYL 398
Query: 451 YIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGST 510
Y+ DR +I G I P + E +LI HP++ D AV G ++ LGE A V DG
Sbjct: 399 YLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVD 458
Query: 511 LTEA---AVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
A +I + QR++ K R + F +P+ GK+ +R LR
Sbjct: 459 PGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLR 504
|
Length = 511 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 4e-51
Identities = 135/534 (25%), Positives = 215/534 (40%), Gaps = 69/534 (12%)
Query: 77 VQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQV 136
V S+A+GL G+ GD V + NS + LA+ G IV P+N S E K +
Sbjct: 42 VLSLAAGLLR-LGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAM 100
Query: 137 TLCKTKISLA------FTIYENVDKLRSW------GTTPVVAVPENLVNDFKEGRFSDFH 184
L + + + + D+L S + +N F
Sbjct: 101 LLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIF--LNSFLTTEMLKQR 158
Query: 185 KLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY 244
L + D P D I ++SGTTG KG ++H I V+ + Y
Sbjct: 159 ALGTTELDYAWAP----DDAVLICFTSGTTGRPKGVTISHSALI--VQSLAKIAIVGY-- 210
Query: 245 LSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVP 304
+ V+L P+ HI GLS AL +L +G V++ +F+A L+ I ++ VT VP
Sbjct: 211 -GEDDVYLHTAPLCHIGGLS-SALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVP 268
Query: 305 PILMALTK-AAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTES-- 361
++ L K + S++++ +G +S+++ D FP+ YGMTE+
Sbjct: 269 AMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACS 328
Query: 362 -------------TAVGTRGFNTKKFSKYFS------VGLLAPNIQAKVVDWVNGCFLPP 402
+ T + S VG AP+++ K+
Sbjct: 329 SLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKI------GLDES 382
Query: 403 GSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKY 462
G + RGP M Y T S + +GWL TGDI + D+ G L+++ R + IK
Sbjct: 383 SRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKT 442
Query: 463 NGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQ 522
G + P ++E VL HP + V V G D L E+ VA V RDG ++ +
Sbjct: 443 GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKN 502
Query: 523 RV---------------APYKKVRR-VVFTKSIPKSAAGKVLRRELRKFLTSKL 560
+ +K + V + K P + GK+ R E+R+ + S L
Sbjct: 503 LTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVLSHL 556
|
Length = 563 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 180 bits (460), Expect = 6e-51
Identities = 133/508 (26%), Positives = 216/508 (42%), Gaps = 78/508 (15%)
Query: 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
R ALV G +++Y +L +A+ L G GD V + S LA L
Sbjct: 7 RPALVVG--GDTLTYAELKERADRLAARLLAL-GGRAGDPVAVYGHKSPDAYAAILACLK 63
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDF 175
GA +P++P I K I E +VA P+
Sbjct: 64 AGAAYVPLDPSQPAERIAK--------------ILEAAGP------AALVADPD------ 97
Query: 176 KEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFV 235
D A IL++SG+TG KG +++H N + F+
Sbjct: 98 ---------------------------DLAYILFTSGSTGKPKGVQISHANLAS----FL 126
Query: 236 RFEASQYEYLSSEAVFLAVLPMFHIYGLSLFAL-GLLSLGPSVVVMRRFEASEMLK---V 291
+ ++ L+ VF P F + LS+F L L+ G ++ V+ + + ++ L
Sbjct: 127 DWMVEDFD-LTEGDVFSNQAP-FS-FDLSVFDLFPALASGATLYVIPKEQIADPLALFEF 183
Query: 292 IDKYGVTHFPVVP-PILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHV 350
+ ++G+T + VP + L ++ L SL SL+ K+ + FP+
Sbjct: 184 LKEHGLTVWVSVPSFASLLLL--SRELNPESLPSLRTFLFCGEVLPKKLAKALRRRFPNA 241
Query: 351 DFIQGYGMTEST-AVGTRGFNTKKFSKYFSV--GLLAPNIQAKVVDWVNGCFLPPGSTGE 407
I YG TE+T AV + S+ + G P ++A ++D +G +PPG GE
Sbjct: 242 RIINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGYPKPGLRALILD-EDGRPVPPGEEGE 300
Query: 408 LWLRGPGTMKEYINNADAT---MSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNG 464
L + GP Y+NN + T + + W TGD+ Y ++DG L + R IK +G
Sbjct: 301 LVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHG 360
Query: 465 YQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRV 524
Y+I ++E L P + + V VAFVV ++G+ T+ A+ L +R+
Sbjct: 361 YRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGALDTK-ALKKELKKRL 419
Query: 525 APYKKVRRVVFTKSIPKSAAGKVLRREL 552
PY RR V+ S+P +A GK+ R+ L
Sbjct: 420 PPYMIPRRFVYLDSLPLNANGKIDRKAL 447
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 1e-50
Identities = 145/535 (27%), Positives = 233/535 (43%), Gaps = 60/535 (11%)
Query: 52 KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
++ R A++D S Y +L +A+GL GI GD VL+ LPN F + F
Sbjct: 40 RYPDRIAVIDGERRLS--YAELDQRADRLAAGL-RRLGIKPGDTVLVQLPNVAEFYITFF 96
Query: 112 ALLYLGAIVIPMNPLLS--VSEIKKQVTLCKTKISLAFTIYENVDK-------LRSWGTT 162
ALL LG V P+ L S SE+ + + + + + D + T
Sbjct: 97 ALLRLG--VAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTL 154
Query: 163 PVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAEL 222
V +V E L P + A S GTTG K
Sbjct: 155 RHV-----IVAGEAEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPR 209
Query: 223 THG----NFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSL-FALGLLSLGPSV 277
TH + A+ E+ + V+L LP H + LS ALG+ G +V
Sbjct: 210 THNDYYYSVRASAEIC---------GFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTV 260
Query: 278 VVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNS-LKSLKQVSSGAA--- 333
V+ +I+++GVT +VPP+ +AA+ + L SL+ + G A
Sbjct: 261 VLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEW--ERADLSSLRLLQVGGARLS 318
Query: 334 PANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTR-------GFNTKKFSKYFSVGLLAPN 386
++ + +G Q +GM E TR +T+ L+P+
Sbjct: 319 ATLARRVPAVLGC----QLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRP-------LSPD 367
Query: 387 IQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDE 446
+ +VVD +G + PG GEL RGP T++ Y + D +G+ +GD+ D
Sbjct: 368 DEVRVVD-ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDP 426
Query: 447 DGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRR 506
DGYL + R+K+ I G +I+ ++E +L+ HP + D A+ D++LGE AF+V +
Sbjct: 427 DGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVK 486
Query: 507 DGSTLTEAAVIDYLAQR-VAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560
+ L A + +L +R +A +K R+ F S+P +A GK+ ++ LR+ L S+L
Sbjct: 487 E-PPLRAAQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASRL 540
|
Length = 542 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 4e-50
Identities = 139/502 (27%), Positives = 222/502 (44%), Gaps = 32/502 (6%)
Query: 68 ISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLL 127
SY +L V +A GL G+ +GD V LPN F ++LA +GA++ P+ P+
Sbjct: 54 FSYRELDCRVDRIAVGLAR-LGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIF 112
Query: 128 SVSEIKKQVTLCKTKISLAFTIYENVD------KLRSWGTTP----VVAVPENLVNDFKE 177
E+ + +K+ + +++ D +L+S P VV + + + F
Sbjct: 113 RERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQS--KLPALRQVVVIDGDGDDSFDR 170
Query: 178 GRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFV-R 236
+ ++ P D ++Y+SGTTG KG T + + + R
Sbjct: 171 VLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAER 230
Query: 237 FEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYG 296
E L V L PM H G + L L + V+ + + ++I + G
Sbjct: 231 LE------LGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETG 284
Query: 297 VTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIE---DFVGAFPHVDFI 353
VT P L L +A K G + SL AP ++E + +GA +
Sbjct: 285 VTFTMASTPFLTDLCRAVKE-SGAPVPSLFTFLCAGAPIPGILVERAWELLGAL----IV 339
Query: 354 QGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP 413
+GMTE+ AV + + G P ++ KV+D NG L G TG L +RG
Sbjct: 340 SAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKLSQGETGRLLVRGC 398
Query: 414 GTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLE 473
Y+ +++ D EGW TGD+A+ D +GY+ I R K+VI G I ++E
Sbjct: 399 SNFGGYLKRPH--LNSTDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIE 456
Query: 474 TVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL-AQRVAPYKKVRR 532
+L HP + VA+ D+ LGE A VV + G TL AA++ +L AQ+VA R
Sbjct: 457 NLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPER 516
Query: 533 VVFTKSIPKSAAGKVLRRELRK 554
+ ++P + AGK+ + LR+
Sbjct: 517 LEVVDALPATPAGKIQKFRLRE 538
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 1e-49
Identities = 146/503 (29%), Positives = 220/503 (43%), Gaps = 49/503 (9%)
Query: 69 SYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLS 128
+Y + + A L G+ +GD V L+ N I F +FL +LGAI +P+N L
Sbjct: 48 TYAEAARAAAAAAHALAAA-GVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALR 106
Query: 129 VSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIA 188
++ + L + L + L + + +P + D + +
Sbjct: 107 GPQL--EHILRNSGARLLVVEAALLAALEA-ADPGDLPLPAVWLLD------APASVSVP 157
Query: 189 GKFDLVERPV---------IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEA 239
+ P ++ DTAAILY+SGTTG SKG H F + R A
Sbjct: 158 AGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFY----WWGRNSA 213
Query: 240 SQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTH 299
E + ++ V LP+FH L+ F LL+ G + V+ RF AS + ++G T
Sbjct: 214 EDLE-IGADDVLYTTLPLFHTNALNAFFQALLA-GATYVLEPRFSASGFWPAVRRHGATV 271
Query: 300 FPVV---PPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGY 356
++ IL++ + ++ PA + F F VD + GY
Sbjct: 272 TYLLGAMVSILLSQPARES----DRAHRVRVALGPGVPA--ALHAAFRERF-GVDLLDGY 324
Query: 357 GMTESTAV--GTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG-- 412
G TE+ V T G + S+G LAP +A+VVD + LP G GEL LR
Sbjct: 325 GSTETNFVIAVTHGS-----QRPGSMGRLAPGFEARVVD-EHDQELPDGEPGELLLRADE 378
Query: 413 PGTMKE-YINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPAD 471
P Y + T+ + W HTGD D DG+ VDR+K+ I+ G IS +
Sbjct: 379 PFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFE 437
Query: 472 LETVLICHPEILDVAVTGAMDKVLGEIPV-AFVVRRDGSTLTEAAVIDYLAQRVAPYKKV 530
+E VL+ HP + AV + LGE V A VV RDG+ L A++ + R+A +
Sbjct: 438 VEQVLLSHPAVAAAAVF-PVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPRLAYFAVP 496
Query: 531 RRVVFTKSIPKSAAGKVLRRELR 553
R V F ++PK+ GKV + LR
Sbjct: 497 RYVEFVAALPKTENGKVQKFVLR 519
|
Length = 542 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 8e-49
Identities = 141/494 (28%), Positives = 226/494 (45%), Gaps = 56/494 (11%)
Query: 89 GISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFT 148
GI +GD V+L L F LAL +GAI IP +L+ +I ++ K+ +
Sbjct: 68 GIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIG 127
Query: 149 ---IYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPV----IRQ 201
+ E++D+ +P + V LV D + DF K I ERP
Sbjct: 128 EDGVPEHIDEAAPECGSPTLLV---LVGDPVPEGWIDFDKEIENASPDFERPTGNDATCN 184
Query: 202 QDTAAILYSSGTTGASKGAELTH----GNFIAAVELFVRFEASQYEYLSSEAVFLAVL-- 255
D + ++SGTTG K E H G+ + A ++ + + L V
Sbjct: 185 DDILLVYFTSGTTGMPKMVEHDHTYPLGHIVTA---------KYWQNVKEGGLHLTVADT 235
Query: 256 ----PMF-HIYGLSLFALGLLSLGPSVVV--MRRFEASEMLKVIDKYGVTHFPVVPPILM 308
++ +YG + G +V V +F+ +L+ I+KYGVT F P I
Sbjct: 236 GWGKAVWGKLYGQWI-------AGAAVFVYDYDKFDPKNLLEKIEKYGVTTFCAPPTIYR 288
Query: 309 ALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTEST-AVGTR 367
L K L L SL+ ++ P N ++ F + ++G+G TE+T + T
Sbjct: 289 FLIKE--DLSKYDLSSLRYCTTAGEPLNPEVFNTFK-EKTGIKLMEGFGQTETTLTIATF 345
Query: 368 GFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLR----GP-GTMKEYINN 422
+ K S+G +P ++D +G G GE+ +R P G Y +
Sbjct: 346 PWMEPKPG---SMGKPSPGYDIDIID-PDGKSCEVGEEGEIVIRTSDGKPLGLFMGYYRD 401
Query: 423 ADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEI 482
+ T +G+ HTGD A+ DEDGYL+ V R ++IK +GY+I P ++E+ LI HP +
Sbjct: 402 PERTAEVW-HDGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAV 460
Query: 483 LDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEA---AVIDYLAQRVAPYKKVRRVVFTKSI 539
L+ AVTG D + G++ A +V G +E + D++ + APYK R + F +
Sbjct: 461 LECAVTGVPDPIRGQVVKATIVLTKGYEPSEELKKELQDHVKKVTAPYKYPRIIEFVDEL 520
Query: 540 PKSAAGKVLRRELR 553
PK+ +GK+ R E+R
Sbjct: 521 PKTISGKIRRVEIR 534
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 6e-48
Identities = 138/526 (26%), Positives = 228/526 (43%), Gaps = 50/526 (9%)
Query: 52 KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
++ R A+ DS G +SY + ++A L+ + V +LLP S+ + L
Sbjct: 627 RNWSRLAVADSTGG-ELSYGKALTGALALARLLKRELKDEE--NVGILLPPSVAGALANL 683
Query: 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYEN---VDKLRSWGTTPVVAVP 168
ALL G + + +N S + +K + + K T+ + ++KL++ G + +P
Sbjct: 684 ALLLAGKVPVNLNYTASEAALKSAIEQAQIK-----TVITSRKFLEKLKNKGFD--LELP 736
Query: 169 EN----LVNDFKE--GRFSDFHKLIAGKF---DLVERPVIRQ---QDTAAILYSSGTTGA 216
EN + D K + L+A + L++R DTA I++SSG+ G
Sbjct: 737 ENVKVIYLEDLKAKISKVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGE 796
Query: 217 SKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPS 276
KG L+H N ++ +E + S L ++ V L+ LP FH +GL++ L G
Sbjct: 797 PKGVMLSHHNILSNIE-----QISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIK 851
Query: 277 VV-VMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPA 335
VV +A + K++ K+ T P L + K L SL+ V +GA
Sbjct: 852 VVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKK-LHPLMFASLRLVVAGAEKL 910
Query: 336 NSKIIEDFVGAFPHVDFIQGYGMTESTAVGT--------RGFNTKKFSKYFSVGLLAPNI 387
++ + F F + ++GYG TE++ V + F + SK SVG+ P +
Sbjct: 911 KPEVADAFEEKF-GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGV 969
Query: 388 QAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT---MSTIDKEGWLHTGDIAYF 444
++VD LPPG G + + GP MK Y+ + + T + ID GW TGD +
Sbjct: 970 AVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHL 1029
Query: 445 DEDGYLYIVDRLKEVIKYNGYQISPADLETVL--ICHPEILDVAVTGAMDKVLGEIPVAF 502
DEDG+L I DR K G + +E L E + AVT D+ GE
Sbjct: 1030 DEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGE---KL 1086
Query: 503 VVRRDGSTLTEAAVIDYLAQ-RVAPYKKVRRVVFTKSIPKSAAGKV 547
VV + + + + K R +++P +GK+
Sbjct: 1087 VVLHTCGAEDVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKL 1132
|
Length = 1146 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 3e-47
Identities = 143/523 (27%), Positives = 229/523 (43%), Gaps = 84/523 (16%)
Query: 64 SGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPM 123
G +Y L +A+ L G+ GD V + + S ++LA L GA+ +P+
Sbjct: 25 DGLRYTYGDLDAASARLANLLVA-LGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPL 83
Query: 124 NPLLSVSEI-------KKQVTLCKTKI-----SLAFTIYENVDKLRSWGTTPVVAVPENL 171
N +++E+ + + +C +A G V E L
Sbjct: 84 NTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA----------GAPHV----ETL 129
Query: 172 VNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAV 231
+ G + F+ V R D AAILY+SGTTG SKGA L+HGN ++
Sbjct: 130 -DADGTGSLLEAAAAAPDDFETVPR---GADDLAAILYTSGTTGRSKGAMLSHGNLLSNA 185
Query: 232 ELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKV 291
V Y + + V + LP+FH +GL + L G S++ + +F+ +L +
Sbjct: 186 LTLVD-----YWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLAL 240
Query: 292 IDKYGVTHFPVVPPI---LMA---LTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVG 345
+ + T VP L+ LT+ A + ++ SG+AP + E
Sbjct: 241 MPR--ATVMMGVPTFYTRLLQEPRLTREA---AAH----MRLFISGSAPL---LAET--- 285
Query: 346 AFPHVDF--------IQGYGMTESTAVGTRGFNTKKFSKYF-------SVGLLAPNIQAK 390
H +F ++ YGMTE+ NT S + +VG P + +
Sbjct: 286 ---HREFQERTGHAILERYGMTET------NMNT---SNPYDGERRAGTVGFPLPGVSLR 333
Query: 391 VVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYL 450
V D G LPPG G + ++GP K Y + T +G+ TGD+ DE GY+
Sbjct: 334 VTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYV 393
Query: 451 YIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGST 510
+IV R K++I GY + P ++E + P +++ AV G GE A VV + G+
Sbjct: 394 HIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAA 453
Query: 511 LTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
L EAA++ L R+A +K+ +RV F +P++ GKV + LR
Sbjct: 454 LDEAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLR 496
|
Length = 504 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 171 bits (434), Expect = 5e-47
Identities = 151/557 (27%), Positives = 231/557 (41%), Gaps = 84/557 (15%)
Query: 7 TFSSERINT-SQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNG---RTALVDS 62
TF+ + + QW PE + P P + L + H HNG R
Sbjct: 5 TFARDHLPPPEQW--PE---FTFDLPQFQYP--ERLNCAAELLDRHVHNGRGNRPCFRTF 57
Query: 63 LSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIP 122
+ +Y L +A L G+ G+ VLL N+ +LA+L GAIV+
Sbjct: 58 --EETWTYQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKAGAIVVT 115
Query: 123 MNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSD 182
PLL E+ V K +I+ A
Sbjct: 116 TMPLLRAKELTTIVD--KARITHA------------------------------------ 137
Query: 183 FHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQY 242
L ++ + D A I ++SGTTG KG H + +A + F R
Sbjct: 138 ----------LCDKRLTAADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPT 187
Query: 243 EYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPV 302
+ VF+ P+ +GL L L G S V++ + +LK I ++ T
Sbjct: 188 P----DDVFIGSPPLAFTFGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFT 243
Query: 303 VPPILMALTKAAKGLCGNSLKSLKQVSSGAA-PANSKIIEDFVGAFPHVDFIQGYGMTES 361
P A+ K +SL+ K VS+G PA K+ +D+ + I G G TE
Sbjct: 244 APTAYRAMLIKVKAFDISSLR--KCVSAGETLPA--KVWQDWYER-TGLKIIDGIGATEM 298
Query: 362 TAVGTRGFNTKKF--SKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEY 419
+ F + +K + G P +A++VD G +P G G L +RGP T Y
Sbjct: 299 LHI----FISANEENAKPGATGKPVPGYEARIVD-DQGNEVPRGEAGRLAVRGP-TGCRY 352
Query: 420 INNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICH 479
++ D ++GW TGDI DEDGY + V R ++I GY I+ ++E L+ H
Sbjct: 353 LD--DERQQEYVRDGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTH 410
Query: 480 PEILDVAVTGAMDKVLGEIPVAFVVRRDG---STLTEAAVIDYLAQRVAPYKKVRRVVFT 536
P++ + AV G D+ G+I A +V RDG + L + D++ +APYK R + F
Sbjct: 411 PDVAECAVIGVPDEERGQIVCAHIVLRDGTKATELLAERLQDFVKAVIAPYKYPREINFV 470
Query: 537 KSIPKSAAGKVLRRELR 553
++PK+ GK+ R LR
Sbjct: 471 DALPKTQTGKIQRFRLR 487
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 6e-47
Identities = 146/543 (26%), Positives = 231/543 (42%), Gaps = 83/543 (15%)
Query: 52 KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
+ R ALV S ++ ++ V ++A+ L G+ +GD +L+ N
Sbjct: 19 RFPDRIALV--WGDRSWTWREIDARVDALAAALAAR-GVRKGDRILVHSRNCNQMFESMF 75
Query: 112 ALLYLGAIVIPMNPLLSVSEI-------KKQVTLCKTKISLAFTIYENVDKLRSWGTTPV 164
A LGA+ +P N + E+ + +C F E+ +R+
Sbjct: 76 AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHA----DFP--EHAAAVRAASPD-- 127
Query: 165 VAVPENLVNDFKEGRFS-DFHKLIAGKFD-LVERPVIRQQDTAAILYSSGTTGASKGAEL 222
V R D+ L+A V + D ++SGTTG K A L
Sbjct: 128 ----LTHVVAIGGARAGLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVL 183
Query: 223 THGN--FIAAVELFVRFEASQYEYLSSEAVFLAVLPMFH---IYGLSLFALGLLS-LGPS 276
THG F+ L A + + L V P+ H I+ L A G + L PS
Sbjct: 184 THGQMAFVITNHL-----ADLMPGTTEQDASLVVAPLSHGAGIHQLCQVARGAATVLLPS 238
Query: 277 VVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTK-AAKGLCGNSLKSLKQVSSGAAP- 334
RF+ +E+ +++++ VT+ VP IL L + A +S SL+ V AP
Sbjct: 239 ----ERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHS--SLRYVIYAGAPM 292
Query: 335 --ANSKIIEDFVGAFPHVDFIQGYGMTESTA-------------------VGTRGFNTKK 373
A+ K +G +Q +G+ E T +GT GF
Sbjct: 293 YRADQKRALAKLGKV----LVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERT- 347
Query: 374 FSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKE 433
++ ++ D G LPPG TGE+ + GP Y NN +A ++
Sbjct: 348 ------------GMEVQIQD-DEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RD 393
Query: 434 GWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDK 493
GW TGD+ + D G+LYI R ++ G + P ++E L+ HP + +VAV G D
Sbjct: 394 GWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDP 453
Query: 494 VLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
V GE+ VA V RDG+ + EA ++ +L +VA YK +R F ++PKS GK+ ++ +R
Sbjct: 454 VWGEVGVAVCVARDGAPVDEAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVR 513
Query: 554 KFL 556
+ L
Sbjct: 514 EEL 516
|
Length = 528 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 171 bits (437), Expect = 9e-47
Identities = 78/200 (39%), Positives = 114/200 (57%), Gaps = 1/200 (0%)
Query: 355 GYGMTESTAVGTRGFNTKKFSKYFS-VGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP 413
YGMTE++ V T+ K + VG P+++ K+VD G +P G GEL RG
Sbjct: 347 AYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGY 406
Query: 414 GTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLE 473
MK Y N+ + T ID +GW+HTGD+A DE+GY+ IV R+K++I G I P ++E
Sbjct: 407 SVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIE 466
Query: 474 TVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRV 533
L HP+I DV V G D+ GE A+++ R G+TLTE V D+ ++A YK R +
Sbjct: 467 EFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYI 526
Query: 534 VFTKSIPKSAAGKVLRRELR 553
F P + GK+ + ++R
Sbjct: 527 RFVDEFPMTVTGKIQKFKMR 546
|
Length = 559 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 171 bits (434), Expect = 1e-46
Identities = 140/513 (27%), Positives = 227/513 (44%), Gaps = 40/513 (7%)
Query: 57 TALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYL 116
ALV + +ISY L LV +A L G+ GD V L + ++ F V LA
Sbjct: 33 PALVVTADRIAISYRDLARLVDDLAGQLTRS-GLLPGDRVALRMGSNAEFVVALLAASRA 91
Query: 117 GAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKL----RSWGTTPV--VAVPEN 170
+V+P++P L ++E + + ++ L +D R+ TT + V
Sbjct: 92 DLVVVPLDPALPIAEQRVRSQAAGARVVL-------IDADGPHDRAEPTTRWWPLTVNVG 144
Query: 171 LVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAA 230
+ G S P + D A I+++ GTTG K TH N ++
Sbjct: 145 GDSGPSGGTLSVHLDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASS 204
Query: 231 VELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV--MRRFEASEM 288
V + + Y LS +AV+P++H +GL L L+ G +V++ RF A
Sbjct: 205 VRAII----TGYR-LSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTF 259
Query: 289 LKVIDKYGVTHFPVVPPI-LMALTKAAKGLCGNSLKSLKQVSSGAAP---ANSKIIEDFV 344
I G T + VP I + L +AA G +L+ + S +AP ++ ++
Sbjct: 260 WDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEF 319
Query: 345 GAFPHVDFIQGYGMTEST-AVGTRGFNTKKFSK--YFSVGLL----APNIQAKVVDWVNG 397
A + +GMTE+T V T ++ S GL+ I+ D G
Sbjct: 320 AA----PVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSD---G 372
Query: 398 CFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLK 457
LP G+ GE+WLRG ++ Y+ + T + +GWL TGD+ G L I R+K
Sbjct: 373 LPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGDLSIRGRIK 431
Query: 458 EVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVI 517
E+I G +ISP +E VL HP +++ AV G D++ GE A +V R+ + T ++
Sbjct: 432 ELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEELV 491
Query: 518 DYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRR 550
+ +R+A ++ +P +A G + RR
Sbjct: 492 QFCRERLAAFEIPASFQEASGLPHTAKGSLDRR 524
|
Length = 534 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 5e-46
Identities = 141/522 (27%), Positives = 223/522 (42%), Gaps = 42/522 (8%)
Query: 55 GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114
TALV +++Y L V ++ASGL G+++G+ V + L +
Sbjct: 15 DATALVHH--DRTLTYAALSERVLALASGL-RGLGLARGERVAIYLDKRLETVTAMFGAA 71
Query: 115 YLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLR-------SWGTTPVVAV 167
G + +P+NPLL ++ + C ++ + T E +D L T +V
Sbjct: 72 LAGGVFVPINPLLKAEQVAHILADCNVRLLV--TSSERLDLLHPALPGCHDLRTLIIVGD 129
Query: 168 PENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNF 227
P + + + KL+A PVI D AAILY+SG+TG KG L+H N
Sbjct: 130 PAHASEGHPGEEPASWPKLLALGDADPPHPVI-DSDMAAILYTSGSTGRPKGVVLSHRNL 188
Query: 228 IAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASE 287
+A + + Y + LAVLP+ YG + +G +VV+ +
Sbjct: 189 VAGAQ-----SVATYLENRPDDRLLAVLPLSFDYGFNQ-LTTAFYVGATVVLHDYLLPRD 242
Query: 288 MLKVIDKYGVTHFPVVPPILMALTKAA-KGLCGNSLKSLKQVSSGAAPANSKIIEDFVGA 346
+LK ++K+G+T VPP+ L + SL+ L S GA P +
Sbjct: 243 VLKALEKHGITGLAAVPPLWAQLAQLDWPESAAPSLRYLTN-SGGAMPR--ATLSRLRSF 299
Query: 347 FPHVDFIQGYGMTE---STAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPG 403
P+ YG+TE ST + + + S+G PN + V+ +G PG
Sbjct: 300 LPNARLFLMYGLTEAFRSTYLPPEEVD----RRPDSIGKAIPNAEVLVLR-EDGSECAPG 354
Query: 404 STGELWLRGPGTMKEYINNADATMSTIDK----EGWLH-------TGDIAYFDEDGYLYI 452
GEL RG Y N+ + T G LH +GD DE+G+LY
Sbjct: 355 EEGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVWSGDTVRRDEEGFLYF 414
Query: 453 VDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLT 512
V R E+IK +GY++SP ++E V + + G D LG+ V V G L
Sbjct: 415 VGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELD 474
Query: 513 EAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
AA++ R+ Y + +++P++A GK+ R+ L K
Sbjct: 475 RAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAK 516
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 6e-46
Identities = 145/522 (27%), Positives = 231/522 (44%), Gaps = 62/522 (11%)
Query: 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
R AL+D +++Y +L ++A GL G+ GD V +L N F + A
Sbjct: 65 RAALIDERG--TLTYAELDEQSNALARGLLAL-GVRAGDGVAVLARNHRGFVLALYAAGK 121
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTK--------ISLAFTIYENVDKLRSWGTTPVVAV 167
+GA +I +N S ++ + K L + ++ +LR+WG P
Sbjct: 122 VGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNP---- 177
Query: 168 PENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNF 227
++ LIAG P + IL +SGTTG KGA +
Sbjct: 178 -DDDEPSGSTDE--TLDDLIAGS-STAPLPKPPKPGGIVIL-TSGTTGTPKGAPRPEPSP 232
Query: 228 IAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASE 287
+A + + S+ + + E L PMFH G + L + +LG +VV+ RRF+
Sbjct: 233 LAPLAGLL----SRVPFRAGETTLLPA-PMFHATGWAHLTLAM-ALGSTVVLRRRFDPEA 286
Query: 288 MLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNS-LKSLKQVSSGAAPANSKIIEDFVGA 346
L+ I K+ T VVP +L + + SLK + + + ++ + A
Sbjct: 287 TLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEA 346
Query: 347 FPHV--DFIQGYGMTE------------STAVGTRGFNTKKFSKYFSVGLLAPNIQAKVV 392
F V + YG TE + A GT VG + K++
Sbjct: 347 FGPVLYNL---YGSTEVAFATIATPEDLAEAPGT-------------VGRPPKGVTVKIL 390
Query: 393 DWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYI 452
D NG +P G G +++ + Y + ID G L +GD+ YFDEDG L++
Sbjct: 391 D-ENGNEVPRGVVGRIFVGNGFPFEGYTD--GRDKQIID--GLLSSGDVGYFDEDGLLFV 445
Query: 453 VDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLT 512
R ++I G + PA++E +L HP++++ AV G D+ G+ AFVV+ G+ L
Sbjct: 446 DGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALD 505
Query: 513 EAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
E A+ DY+ +A YK R VVF +P++ GKVL+RELR+
Sbjct: 506 EDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELRE 547
|
Length = 549 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 1e-45
Identities = 140/509 (27%), Positives = 227/509 (44%), Gaps = 30/509 (5%)
Query: 55 GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114
G+TA +D +S S+SY +L V+ + + LR G+ + + VLLL+ + + FP+ FL +
Sbjct: 20 GKTAFIDDIS--SLSYGELEAQVRRLGAALRR-LGVKREERVLLLMLDGVDFPIAFLGAI 76
Query: 115 YLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFT-----IYENVDKLRSWGTTPVVAVPE 169
G + + +N LL+ + + + ++ I + K VV PE
Sbjct: 77 RAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPE 136
Query: 170 NLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIA 229
E L+A + + + + D A LYSSG+TG KG TH N
Sbjct: 137 AGEVQLAE--------LLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYW 188
Query: 230 AVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVM-RRFEASEM 288
EL+ R + + VF A +F YGL +S+G + V+M R +
Sbjct: 189 TAELYAR---NTLGIREDDVVFSAA-KLFFAYGLGNALTFPMSVGATTVLMGERPTPDAV 244
Query: 289 LKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP 348
+ ++ T F VP L A A L L+ +S +++ + + F
Sbjct: 245 FDRLRRHQPTIFYGVP-TLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFG 303
Query: 349 HVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGEL 408
D + G G TE + N +Y + G P + ++V G + G GEL
Sbjct: 304 V-DIVDGIGSTEMLHIFLS--NLPGDVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGEL 359
Query: 409 WLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQIS 468
+ GP + Y NN T T E W +GD ++DG R +++K +G +S
Sbjct: 360 LISGPSSATMYWNNRAKTRDTFQGE-WTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVS 418
Query: 469 PADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVID---YLAQRVA 525
P ++E+ LI HP +L+ AV G D+ P AF+V R G + A + ++ R+A
Sbjct: 419 PFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLA 478
Query: 526 PYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
PYK R +VF +PK+A GK+ R +LR+
Sbjct: 479 PYKYPRWIVFVDDLPKTATGKIQRFKLRE 507
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 168 bits (426), Expect = 1e-45
Identities = 150/502 (29%), Positives = 231/502 (46%), Gaps = 42/502 (8%)
Query: 69 SYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLS 128
SY +L ++A+GL GI QGD ++ LPN F ++F ALL LG V P+ L S
Sbjct: 50 SYRELDQRADNLAAGLTK-LGIKQGDTAVVQLPNIAEFYIVFFALLKLG--VAPVLALFS 106
Query: 129 --VSEIK---KQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDF 183
SE+ Q+ I A ++++ D R + + N++ + G F
Sbjct: 107 HRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQLQSK--LPTLRNIIVAGQTGEAELF 164
Query: 184 HKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYE 243
L + V+ P + + A S G+TG K TH ++ +V V E
Sbjct: 165 LWL-ESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSV--EICW-- 219
Query: 244 YLSSEAVFLAVLPMFHIYGLSL-FALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPV 302
L+ + +L LP H Y LS ALG+ G VV+ ++ +I+++ VT +
Sbjct: 220 -LTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTAL 278
Query: 303 VPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHV---DFIQGYGMT 359
VPP + +AA L SLK + G A K P V Q +GM
Sbjct: 279 VPPAVALWMQAASK-SRADLSSLKLLQVGGA----KFSAAAARRVPAVFGCQLQQVFGMA 333
Query: 360 ESTAVGTR-------GFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG 412
E TR F T+ ++P+ + +VVD +G + PG TG L RG
Sbjct: 334 EGLVNYTRLDDPAEIIFTTQGRP-------MSPDDEVRVVD-DHGNPVAPGETGMLLTRG 385
Query: 413 PGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADL 472
P T + Y + + D EG+ +TGD+ +GY+ +V R K+ I G +I+ ++
Sbjct: 386 PYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEI 445
Query: 473 ETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQR-VAPYKKVR 531
E +L+ HP + D A+ D++LGE AF+V RD L A + +L +R +A YK
Sbjct: 446 ENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRD-PALKAAQLRRFLRERGLAEYKLPD 504
Query: 532 RVVFTKSIPKSAAGKVLRRELR 553
RV F S+P +A GKV ++ LR
Sbjct: 505 RVEFVDSLPLTAVGKVDKKALR 526
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 4e-43
Identities = 145/521 (27%), Positives = 231/521 (44%), Gaps = 63/521 (12%)
Query: 68 ISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIF---LALLYLGAIVIPMN 124
++ + + + +AS L GI +GD V +LLPN P + + GA++ +N
Sbjct: 44 RTWAETYARCRRLASALARR-GIGRGDTVAVLLPNI---PAMVEAHFGVPMAGAVLNTLN 99
Query: 125 PLLSVSEIKKQVTLCKTKISLAFTIYENVDK---LRSWGTTPVV---AVPENLVNDFKEG 178
L + I + + K+ + T + V + G P+V PE + G
Sbjct: 100 TRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPE-----YPGG 154
Query: 179 RF---SDFHKLIA-GKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTH-GNFIAAVEL 233
RF D+ +A G D + D A+ Y+SGTTG KG H G ++ A+
Sbjct: 155 RFIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSN 214
Query: 234 FVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVID 293
+ + ++ V+L LPMFH G F + + + V +R+ + + +I
Sbjct: 215 ILAWGMPKH------PVYLWTLPMFHCNGWC-FPWTVAARAGTNVCLRKVDPKLIFDLIR 267
Query: 294 KYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDF--VGAFPHVD 351
++GVTH+ P +L AL A + + +GAAP + +I +G D
Sbjct: 268 EHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPP-AAVIAKMEEIG----FD 322
Query: 352 FIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAK----------------VVDWV 395
YG+TE+ G + L + +A+ V+D
Sbjct: 323 LTHVYGLTET--YGPATVCAWQPE----WDALPLDERAQLKARQGVRYPLQEGVTVLDPD 376
Query: 396 NGCFLP-PGST-GELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIV 453
+P G T GE+ RG MK Y+ N AT GW HTGD+A DGY+ I
Sbjct: 377 TMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIK 435
Query: 454 DRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTE 513
DR K++I G IS ++E VL HP +L AV D GE+P AFV +DG++ TE
Sbjct: 436 DRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATE 495
Query: 514 AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
+I + + +A +K + VVF +PK++ GK+ + LR+
Sbjct: 496 EEIIAHCREHLAGFKVPKAVVFG-ELPKTSTGKIQKFVLRE 535
|
Length = 545 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 4e-43
Identities = 144/506 (28%), Positives = 244/506 (48%), Gaps = 41/506 (8%)
Query: 69 SYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLS 128
S+ +L L + A+ L G+ +GD V ++LP + ++ +A + G + IP L+
Sbjct: 43 SFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLT 102
Query: 129 VSEIKKQVTLCKTK-ISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLI 187
+I ++ K K I + + VD + S P + + LV++ + +F +L+
Sbjct: 103 AKDILYRLQASKAKCIVTSDELAPAVDSIAS--ECPSLKT-KLLVSEHSRDGWLNFKELL 159
Query: 188 AGKFDLVERPVIR--QQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYL 245
K E ++ Q+ AI ++SGTTG K AE +H + +++ R+ L
Sbjct: 160 --KEASTEHTCVKTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLD----L 213
Query: 246 SSEAVFLAVLPMFHIYGLSLFALGLL----SLGPSVVV--MRRFEASEMLKVIDKYGVTH 299
+ + + G A+ L G V V + RF+ +L+ + KY +T
Sbjct: 214 TPSDIMWNMSDT----GWIKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPITT 269
Query: 300 FPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMT 359
F P + L + + L KSL+ +G P N +++E + A +D +GYG T
Sbjct: 270 FCSAPTVYRMLVQ--QDLTSYKFKSLRHCVTGGEPLNPEVLEQW-KAQTGLDLYEGYGQT 326
Query: 360 ESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLR-GP----G 414
E T + F K K S+G +P +++D NG LPPG+ G++ +R P
Sbjct: 327 E-TGLICANFKGMKI-KPGSMGKASPPYDVQIID-DNGNVLPPGTEGDIGIRVKPTRPFC 383
Query: 415 TMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLET 474
Y++N + T +TI + ++ TGD DEDGY + V R +VI +GY+I P ++E+
Sbjct: 384 LFSCYVDNPEKTAATIRGDFYI-TGDRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVES 442
Query: 475 VLICHPEILDVAVTGAMDKVLGEIPVAFVV------RRDGSTLTEAAVIDYLAQRVAPYK 528
LI HP +++ AV + D + GE+ AFVV D LT + +++ APYK
Sbjct: 443 ALIEHPAVVESAVVSSPDPIRGEVVKAFVVLAPQFLSHDPEQLT-KELQEHVKSVTAPYK 501
Query: 529 KVRRVVFTKSIPKSAAGKVLRRELRK 554
R+V F + +PK+ GK+ R ELR
Sbjct: 502 YPRKVEFVQELPKTITGKIKRNELRD 527
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 5e-41
Identities = 124/491 (25%), Positives = 186/491 (37%), Gaps = 103/491 (20%)
Query: 68 ISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPL- 126
ISY ++ ++ SGLR G+ GD + + N P + + + + PL
Sbjct: 6 ISYKEVEERALNIGSGLRAL-GLKPGDKIGIFAENR---PEWIITEQACFSQSLVIVPLY 61
Query: 127 --LSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFH 184
L I + L +T+IS+ F + K F +
Sbjct: 62 DTLGEEAI--EYILNETEISIVFC------------------------DAVKVYSFEELE 95
Query: 185 KLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY 244
+L GK + V + +D A I+Y+SGTTG KG LTHGN +A V E+
Sbjct: 96 EL--GKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGV---AGINKIVPEF 150
Query: 245 LSSEAVFLAVLPMFHIYGLSL--------FALGLLS------------LGPSVV-----V 279
+ V+++ LP+ HI+ + +G S L P+V V
Sbjct: 151 IGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKELKPTVFVGVPRV 210
Query: 280 MRRFEASEMLKVIDK----------------YGVTHFPVVP-PILMALT--KAAKGLCGN 320
+ R + KV K + P+ L K L G
Sbjct: 211 LDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGHGYASPLWDKLVFKKIKAALGGR 270
Query: 321 SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGT----RGFNTKKFSK 376
++ + SG AP + E F+ +QGYG+TE+ A GT T
Sbjct: 271 ----VRLMLSGGAPLSPDTQE-FLRVALGCPVLQGYGLTETCAGGTLSDPGDTTTG---- 321
Query: 377 YFSVGLLAPNIQAKVVDWVNGCFLPPGS--TGELWLRGPGTMKEYINNADATMSTIDKEG 434
VG P + K+VD + GE+ +RGP K Y N + T D++G
Sbjct: 322 --HVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFDEDG 379
Query: 435 WLHTGDIAYFDEDGYLYIVDRLKEVIKY-NGYQISPADLETVLICHPEILDVAVTGAMDK 493
W HTGDI + DG L I+DR K + K G ++ LE + P + + V G K
Sbjct: 380 WFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGDSLK 439
Query: 494 VLGEIPVAFVV 504
VA VV
Sbjct: 440 SF---LVAIVV 447
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 2e-40
Identities = 101/443 (22%), Positives = 167/443 (37%), Gaps = 58/443 (13%)
Query: 69 SYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLS 128
+Y +L +A LR G+ GD V +LL S V LA+L GA +P++P
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 129 VSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIA 188
+ L L T +L G V + + L + +
Sbjct: 61 AERL--AFILEDAGARLLLTDSALASRLA--GLVLPVILLDPLELAALDDAPAPPPP--- 113
Query: 189 GKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSE 248
D A ++Y+SG+TG KG +TH + + + R L +
Sbjct: 114 -------DAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYG-----LDPD 161
Query: 249 AVFLAVLPMFHIYG--LSLFA-LGLLSLGPSVVV----MRRFEASEMLKVIDKYGVTHFP 301
L F S+ G L G ++VV R +A+ + +I ++ VT
Sbjct: 162 DRVL----QFASLSFDASVEEIFGALLAGATLVVPPEDEERDDAALLAALIAEHPVTVLN 217
Query: 302 VVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTES 361
+ P +L L A +L SL+ V G +++ + P I YG TE+
Sbjct: 218 LTPSLLALLAAALPP----ALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTET 273
Query: 362 T---------AVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG 412
T + +G N + V+D + +P G GEL++ G
Sbjct: 274 TVWSTATLVDPDDAPRESPV------PIGRPLANTRLYVLD-DDLRPVPVGVVGELYIGG 326
Query: 413 PGTMKEYINNADAT--------MSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNG 464
PG + Y+N + T + D TGD+ + DG L + R+ + +K G
Sbjct: 327 PGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRG 386
Query: 465 YQISPADLETVLICHPEILDVAV 487
Y+I ++E L+ HP + + V
Sbjct: 387 YRIELGEIEAALLRHPGVREAVV 409
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 3e-40
Identities = 97/308 (31%), Positives = 153/308 (49%), Gaps = 36/308 (11%)
Query: 264 SLFALGLLSLGPSVVVMR--RFEASEMLKVIDKYGVTHFPVVPP------ILMALTKAAK 315
S FA + G +V + RF+A L ++K+GVT F PP I L +
Sbjct: 143 SFFAP--WNAGATVFGINYPRFDARRYLGALEKFGVTTF-CAPPTVWRMFIQQDLAQYDV 199
Query: 316 GLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTA-VGTRGFNTKKF 374
L++ S P N ++IE A+ + GYG TE+TA +G N+
Sbjct: 200 --------RLREAVSAGEPLNPEVIERVKKAW-GLTIRDGYGQTETTAMIG----NSPGQ 246
Query: 375 S-KYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWL----RGPGTMKEYINNADATMST 429
K S+G P + ++D P + GE+ L R G M Y+ + + T +
Sbjct: 247 KVKPGSMGRPLPGYRVVLLDDEGK--EIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAA 304
Query: 430 IDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTG 489
G+ TGD AY DEDGYL+ V R +V K + Y+ISP ++E+ L+ HP + + AV
Sbjct: 305 FR-GGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVP 363
Query: 490 AMDKVLGEIPVAFVVRRDG---STLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGK 546
+ D + +P A++V + G S + ++ +R+APYK++RR+ F +PK+ +GK
Sbjct: 364 SPDPIRLAVPKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRRIEFVGELPKTISGK 423
Query: 547 VLRRELRK 554
+ R ELRK
Sbjct: 424 IRRVELRK 431
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 5e-40
Identities = 120/498 (24%), Positives = 215/498 (43%), Gaps = 54/498 (10%)
Query: 68 ISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLL 127
++Y F V VA+ L S+ + +LL N I F +F G +P++
Sbjct: 27 LTYKDWFESVCKVANWLNEK--ESKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIKW 84
Query: 128 SVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLI 187
E+K+++ + + T ++ L V+ + E E +
Sbjct: 85 KQDELKERLAISNA--DMIVTERYKLNDL-PDEEGRVIEIDE--WKRMIEKYLPTYA--- 136
Query: 188 AGKFDLVERPVIRQQDTAAIL-YSSGTTGASKGAELTH----GNFIAAVELFVRFEASQY 242
P+ Q+ + ++SG+TG K +F V F
Sbjct: 137 ---------PIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-------- 179
Query: 243 EYLSSEAVFLAVLPMFHIYGLSLFALGLLS---LGPSVVVMRRFEASEMLKVIDKYGVTH 299
++ E L + H SLF G +S +G +V +MR+F +++L ++ ++
Sbjct: 180 -HMKREDSVLIAGTLVH----SLFLYGAISTLYVGQTVHLMRKFIPNQVLDKLETENISV 234
Query: 300 FPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAA-PANSKIIEDFVGAFPHVDFIQGYGM 358
VP +L +L K + N +K +SSGA A +K E FP+ + YG
Sbjct: 235 MYTVPTMLESLYKE-NRVIENKMKI---ISSGAKWEAEAK--EKIKNIFPYAKLYEFYGA 288
Query: 359 TESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKE 418
+E + V T + + + SVG N+Q ++ + G + G G ++++ P
Sbjct: 289 SELSFV-TALVDEESERRPNSVGRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMG 346
Query: 419 YINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLIC 478
YI ++ +GW+ D+ Y DE+G++YIV R K +I + G I P ++E+VL
Sbjct: 347 YIIGG-VLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHE 405
Query: 479 HPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKS 538
HP + ++ V G D GE PVA + GS T+ + + QR++ +K + F
Sbjct: 406 HPAVDEIVVIGVPDSYWGEKPVAII---KGSA-TKQQLKSFCLQRLSSFKIPKEWHFVDE 461
Query: 539 IPKSAAGKVLRRELRKFL 556
IP + +GK+ R E + ++
Sbjct: 462 IPYTNSGKIARMEAKSWI 479
|
Length = 487 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (384), Expect = 1e-39
Identities = 149/536 (27%), Positives = 233/536 (43%), Gaps = 78/536 (14%)
Query: 69 SYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLS 128
++PQ + +A+ L I++ D V +L PN+ + A+ GA++ P+N L
Sbjct: 41 TWPQTYDRCCRLAASLIS-LNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLD 99
Query: 129 VSEIKKQVTLCKTKI-----SLAFTIYENVDKLRSWGTT---PVVAVPENLVNDFKEGRF 180
+ I + K KI S E + L S + PV+ + E DF +
Sbjct: 100 ATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEI---DFPKRPS 156
Query: 181 S---DFHKLI----------AGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTH-GN 226
S D+ LI A F + + D ++ Y+SGTT KG ++H G
Sbjct: 157 SEELDYECLIQRGEPTPSLVARMFR-----IQDEHDPISLNYTSGTTADPKGVVISHRGA 211
Query: 227 FIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEAS 286
+++ + + +E V+L LPMFH G + F G + G + V MR A
Sbjct: 212 YLSTLSAIIGWEMGTC------PVYLWTLPMFHCNGWT-FTWGTAARGGTSVCMRHVTAP 264
Query: 287 EMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSL-----KSLKQVSSGAAPANSKIIE 341
E+ K I+ + VTH VP + L K GNSL V +G +P + +++
Sbjct: 265 EIYKNIEMHNVTHMCCVPTVFNILLK------GNSLDLSPRSGPVHVLTGGSPPPAALVK 318
Query: 342 DFVGAFPHVDFIQGYGMTESTAVGTRGF-----NTKKFSKYFSVGLLA----PNIQAKVV 392
V + YG+TE+T G F + + + L A + V
Sbjct: 319 KVQRLGFQV--MHAYGLTEAT--GPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADV 374
Query: 393 DWVNGCFLPP----GST-GELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDED 447
D N G T GE+ ++G MK Y+ N AT K GWL+TGD+ D
Sbjct: 375 DVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPD 433
Query: 448 GYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD 507
G++ I DR K++I G IS ++E VL +P++L+ AV GE P AFVV
Sbjct: 434 GHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEK 493
Query: 508 GST----------LTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
G T E +I+Y + + + R+VVF + +PK+ GK+L+ +LR
Sbjct: 494 GETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLR 549
|
Length = 579 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 3e-39
Identities = 109/501 (21%), Positives = 188/501 (37%), Gaps = 91/501 (18%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPL 126
S+++ +L +A GLR GI +GD V+L++P + AL +GA+ + ++P
Sbjct: 2 SLTFRELDERSDRIARGLRAS-GIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPG 60
Query: 127 LSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKL 186
+ + + + P + +D
Sbjct: 61 MGRKHLGRCLE----------------------EAEPDAFIGIPKADD------------ 86
Query: 187 IAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLS 246
AAIL++SG+TG KG TH F A ++ S Y
Sbjct: 87 -----------------PAAILFTSGSTGPPKGVVYTHRTFAAQIDAL----RSLYGIRE 125
Query: 247 SEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMR--RFEASEMLKVIDKYGVTHFPVVP 304
+ LA P F ++G ALG+ ++ P++ + +++ + I + G + P
Sbjct: 126 GD-RDLAAFPPFALFGP---ALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSP 181
Query: 305 PILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAF-PHVDFIQGYGMTES-- 361
+L + + + G L SL++V S AP ++ FV P + YG TE+
Sbjct: 182 ALLKNVARYCEEN-GIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEALP 240
Query: 362 -TAVGTRGFNTKKFSKYFS-------VGLLAPNIQAKVV--------DWVNGCFLPPGST 405
++ R S VG P I +++ W + LPPG
Sbjct: 241 VASIEGR--EVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEV 298
Query: 406 GELWLRGPGTMKEYINNADATMST--IDKEGWLH-TGDIAYFDEDGYLYIVDRLKEVIKY 462
GE+ + GP +EY N +AT D H GD+ YFD+ G L+ R ++
Sbjct: 299 GEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVET 358
Query: 463 NGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL-- 520
G + +E V HP + A+ G + K + PV V + L
Sbjct: 359 AGGTLFTVPVEQVFNRHPGVRRSALVG-VGKPGTQAPVLVVEPMPPVLDRRKRLEGRLRA 417
Query: 521 -AQRVAPYKKVRRVVFTKSIP 540
A++ +++ V+ P
Sbjct: 418 TAKQAPATVEIQAVLIHPQFP 438
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 4e-39
Identities = 133/522 (25%), Positives = 212/522 (40%), Gaps = 103/522 (19%)
Query: 69 SYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLS 128
++ Q+ + +A+ L+ G+ GD + +L N + + LA+ G + +P+ P L+
Sbjct: 8 TWAQVADQARRIAAALQS-LGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLT 66
Query: 129 VSEIKKQVTLCKTKISLAFTIYENVDKLRSW---------GTTPVVAVPENLVNDFKEGR 179
I+ + K V KL W G ++ P + + D
Sbjct: 67 AETIRYVLEHSDAKALF-------VGKLDDWDAMKAGVPEGLPTIILFPYSTLKDHY--- 116
Query: 180 FSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEA 239
+ L+A L RP+ +D A I+Y+SGTTG KG L+ G F A + +
Sbjct: 117 --KWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIG 174
Query: 240 SQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGV-- 297
L+ L+ LP+ HI + G L G V F S +D +
Sbjct: 175 -----LTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVF----FVES-----LDTFAADL 220
Query: 298 -----THFPVVP-------------------------PILMALTKAAKGLCGNSLKSLKQ 327
T F VP PIL +L K K L G L +
Sbjct: 221 QRARPTVFFSVPRLWTKFQQGILAKLPPEKLNLLLKIPILSSLVKK-KILKGLGLDQARL 279
Query: 328 VSSGAAPANSKIIEDF--VGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAP 385
SGAAP +I + +G + +GYGMTE+ A T N + +VG P
Sbjct: 280 AGSGAAPMPPALIAWYRKLG----LPICEGYGMTENFAYST--LNYPGDRRIGTVGKPIP 333
Query: 386 NIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFD 445
++ K+ + GE+ +R PG M Y + + T ++GWLHTGD D
Sbjct: 334 GVELKISE-----------DGEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEID 382
Query: 446 EDGYLYIVDRLKEVIKY-NGYQISPADLETVLICHPEILDVAVTGA-MDKVLGEIPVAFV 503
EDG+L I R+KE+ K G ++PA +E +L +P + V V G+ + + PVA V
Sbjct: 383 EDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHVEQVCVVGSGLPQ-----PVALV 437
Query: 504 VRRDGSTLTEAAVI-----DYLA---QRVAPYKKVRRVVFTK 537
V + + E + LA + ++++ +V K
Sbjct: 438 VLSEAADPLEREEVEESLQQTLAKVNSELESHERLSALVVVK 479
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 6e-39
Identities = 114/386 (29%), Positives = 174/386 (45%), Gaps = 51/386 (13%)
Query: 202 QDTAAIL-YSSGTTGASKGAELTH-GNFIAAVELFVRFEASQYEYL--SSEAVFLAVLPM 257
++TAA + Y+SGTTG KG +H N + A+ A+ + L S+ L V+P+
Sbjct: 176 ENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALM------ANNGDALGTSAADTMLPVVPL 229
Query: 258 FHIYGLSLFALGLLSLGPSV---VVM--RRFEASEMLKVIDKYGVTHFPVVPPI-LMALT 311
FH + G+ PS+ +VM + + + + +++D VT VP + LM L
Sbjct: 230 FHAN-----SWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQ 284
Query: 312 KAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNT 371
K G L LK V G + +I+ F V+ +GMTE + +GT
Sbjct: 285 YMEKE--GLKLPHLKMVVCGGSAMPRSMIKAFEDM--GVEVRHAWGMTEMSPLGTLAALK 340
Query: 372 KKFSKY----------------FSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGT 415
FSK F V + + K + W F G L +RGP
Sbjct: 341 PPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTF------GRLKVRGPAV 394
Query: 416 MKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETV 475
Y D + +D +G+ TGD+A D GY+ I DR K+VIK G IS DLE +
Sbjct: 395 AAAYYR-VDGEI--LDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENL 451
Query: 476 LICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVF 535
+ HP++ + AV G E P+ V + G T T ++ Y+ ++A + V F
Sbjct: 452 AVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAF 511
Query: 536 TKSIPKSAAGKVLRRELRK-FLTSKL 560
+IP +A GK+L+ LR+ F KL
Sbjct: 512 VDAIPHTATGKILKTALREQFKDYKL 537
|
Length = 542 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 1e-38
Identities = 134/510 (26%), Positives = 218/510 (42%), Gaps = 82/510 (16%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPL 126
+ +Y +L V +ASGL G+ +GD V + +P V LA+ +GAI +P+
Sbjct: 7 TWTYSELAREVNRLASGLAAL-GLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSG 65
Query: 127 LSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKL 186
+ ++ + K+ + + + G+
Sbjct: 66 FGPDAVATRLQDAEAKVLITADGF------------------------LRRGK------- 94
Query: 187 IAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFI--AAVELFVRFEASQYEY 244
V + D A I+Y+SGTTG KG TH F AA ++ F+
Sbjct: 95 ----------RVDLKDDPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFD------ 138
Query: 245 LSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFE-------ASEMLKVIDKYGV 297
L L + M + G LG L LG ++V+ +E + ++++++ V
Sbjct: 139 LKPGDRLLWITDMGWMMG-PWLVLGGLLLGATIVL---YEGAPDYPDPDRLWRIVERHKV 194
Query: 298 THFPVVPPILMAL-TKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHV-----D 351
TH + P ++ AL + G+ L SL+ + S P + E ++ F V
Sbjct: 195 THLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDP---ESWLWLFERVGGGRAP 251
Query: 352 FIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLR 411
I G TE + G G + K S +P + A VVD +G + GEL +R
Sbjct: 252 IINYSGGTE-ISGGILGNVPIRPIKPCSFNGPSPGMDADVVD-EDGRPVRGE-VGELVVR 308
Query: 412 GP--GTMKEYINNADATMSTIDK--EG-WLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQ 466
P G + + + + + T G W+H GD A DEDGY YI+ R + IK G +
Sbjct: 309 APWPGMTRGFWRDPERYLETYWSRFPGVWVH-GDWALVDEDGYWYILGRSDDTIKVAGKR 367
Query: 467 ISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEA---AVIDYLAQR 523
+ PA++E+VL HP + + A G D V GE V FVV + G T + A + D++
Sbjct: 368 VGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVLKPGVTPSAALEAELADHVGDA 427
Query: 524 VAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
+ + R V F +PK+ GK++RR +R
Sbjct: 428 LGKPFRPREVHFVSDLPKTRNGKIMRRVIR 457
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 4e-38
Identities = 117/518 (22%), Positives = 202/518 (38%), Gaps = 94/518 (18%)
Query: 55 GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114
A+V S++Y +L +A LR G+ GD V + L S V LA+L
Sbjct: 2 DAVAVVFG--DQSLTYRELNERANRLAHYLRAR-GVGPGDLVAICLERSPEMVVAILAVL 58
Query: 115 YLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVND 174
GA +P++P + + K+ ++ P++L
Sbjct: 59 KAGAAYVPLDPAYPAERLAYMLEDSGAKL--------------------LLTDPDDL--- 95
Query: 175 FKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELF 234
A ++Y+SG+TG KG + H +
Sbjct: 96 ------------------------------AYVIYTSGSTGRPKGVMVEHRGLVN----- 120
Query: 235 VRFEASQYEY-LSSEAVFLAVLPMFHIYG--LSLFAL-GLLSLGPSVVVMR---RFEASE 287
Q Y L++ L F + S++ + L G ++V+ +
Sbjct: 121 -LLAWLQERYGLTAGDRVL----QFASFSFDASVWEIFPPLLSGATLVLAPPEVLRDPEA 175
Query: 288 MLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAF 347
+ +++ ++ +T +VP +L AL A + +L SL+ V G ++++ + F
Sbjct: 176 LAELLREHRITVLHLVPSLLRALLDALE---PAALPSLRLVIVGGEALPAELVRRWRELF 232
Query: 348 PHVDFIQGYGMTESTAVGT--RGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGST 405
P + YG TE+T T +G N + V+D + +P G
Sbjct: 233 PGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVYVLD-EDLRPVPVGVP 291
Query: 406 GELWLRGPGTMKEYINNADAT-----MSTIDKEG--WLHTGDIAYFDEDGYLYIVDRLKE 458
GEL++ G G + Y+N + T G TGD+A + DG L + R +
Sbjct: 292 GELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLEFLGRADD 351
Query: 459 VIKYNGYQISPADLETVLICHPEILDVAVT----GAMDKVLGEIPVAFVVRRDGSTLTEA 514
+K GY+I ++E L+ HP + + V GA +K L VA+VV G+ L A
Sbjct: 352 QVKIRGYRIELGEIEAALLAHPGVREAVVVAREDGAGEKRL----VAYVVPAAGAELDAA 407
Query: 515 AVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
+ +LA+R+ Y V ++P + GKV R+ L
Sbjct: 408 ELRAFLAERLPDYMVPSAFVVLDALPLTPNGKVDRKAL 445
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 6e-38
Identities = 147/532 (27%), Positives = 237/532 (44%), Gaps = 53/532 (9%)
Query: 51 HKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIF 110
H + A++ SY +L ++A LR GI GD L+ L N F + F
Sbjct: 34 HAASDAIAVICG--ERQFSYRELNQASDNLACSLRRQ-GIKPGDTALVQLGNVAEFYITF 90
Query: 111 LALLYLGAIVIPMNPLLS---------VSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT 161
ALL LG V P+N L S S+I+ + + + +L F+ + ++ L + +
Sbjct: 91 FALLKLG--VAPVNALFSHQRSELNAYASQIEPALLIADRQHAL-FSDDDFLNTLVAEHS 147
Query: 162 TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAE 221
+ V + L+ND E D A F P + A S G+TG K
Sbjct: 148 SLRVVL---LLNDDGEHSLDDAINHPAEDFTATPSPA---DEVAFFQLSGGSTGTPKLIP 201
Query: 222 LTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSL-FALGLLSLGPSVVVM 280
TH ++ +V V E + + +L LP H Y +S ALG+ G +VV+
Sbjct: 202 RTHNDYYYSVRRSV--EICG---FTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLA 256
Query: 281 RRFEASEMLKVIDKYGVTHFPVVPP-ILMALTKAAKGLCGNSLKSLKQVSSGAA---PAN 336
A+ +I+K+ V +VPP + + L A+G L SLK + G A
Sbjct: 257 PDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETL 316
Query: 337 SKIIEDFVGAFPHVDFIQGYGMTESTAVGTR-------GFNTKKFSKYFSVGLLAPNIQA 389
++ I +G Q +GM E TR F T+ ++P+ +
Sbjct: 317 ARRIPAELGC----QLQQVFGMAEGLVNYTRLDDSDERIFTTQGRP-------MSPDDEV 365
Query: 390 KVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGY 449
V D +G LP G G L RGP T + Y + S D G+ +GD+ D DGY
Sbjct: 366 WVAD-ADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGY 424
Query: 450 LYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS 509
+ +V R K+ I G +I+ ++E +L+ HP ++ A+ D+++GE AF+V ++
Sbjct: 425 ITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP- 483
Query: 510 TLTEAAVIDYL-AQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560
L + +L Q +A +K RV S+P +A GKV +++LR++L S+
Sbjct: 484 -LKAVQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 534
|
Length = 536 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 9e-38
Identities = 128/510 (25%), Positives = 204/510 (40%), Gaps = 92/510 (18%)
Query: 68 ISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPM---- 123
SY +L L A+ L G+ +G+ V LLP S V L L LGA+ P+
Sbjct: 1 YSYQELKELSARFANVL-ASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAF 59
Query: 124 --NPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFS 181
P+ E+ + L T +YE D
Sbjct: 60 GPEPIRDRLELGEAKVLITTP-----ELYERTDP-------------------------- 88
Query: 182 DFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQ 241
+D A + ++SGTTG KG H A
Sbjct: 89 --------------------EDPALLHFTSGTTGKPKGVLHVH-------------RAVV 115
Query: 242 YEYLSSEAVF-LAVLPMFH-------IYGLSLFALGLLSLGPSVVVMR-RFEASEMLKVI 292
Y ++ V L ++ + G S + L G ++VV F+A ++
Sbjct: 116 AHYATARYVLDLRPDDVYWCTADPGWVTGTSYGIIAPLLNGVTLVVDEGEFDAERWYGIL 175
Query: 293 DKYGVTHFPVVPPILMALTKA-AKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVD 351
++ VT + P L L +A + L SL+ ++S P N +++ +
Sbjct: 176 EEEKVTVWYTAPTALRMLMRAGPELAARYDLSSLRHIASVGEPLNPEVVVWGEKVL-GMP 234
Query: 352 FIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNG---CFLPPGSTGEL 408
+ TE+ A+ + K S+G P I+A V++ PG GEL
Sbjct: 235 IHDTWWQTETGAIMIANYPGIPV-KPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGEL 293
Query: 409 WLRG--PGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQ 466
L+ P + Y+ N + S+ +GW TGD+AY DEDGY + V R +VIK G+
Sbjct: 294 ALKPGWPSMFRGYLGNEERYASSF-VDGWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHL 352
Query: 467 ISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEA---AVIDYLAQR 523
+ P ++E+ L+ HP + + V G D V GEI AFV R G +E ++ + QR
Sbjct: 353 VGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEPSEELRRELLTFARQR 412
Query: 524 VAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
+ R + F ++PK+ +GK++RR L+
Sbjct: 413 LGAAVAPREIHFVDNLPKTRSGKIMRRLLK 442
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 1e-37
Identities = 121/541 (22%), Positives = 210/541 (38%), Gaps = 109/541 (20%)
Query: 55 GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114
TA++D +++Y +L ++A+ LR G++ GD V +++P V L +L
Sbjct: 2 DATAVIDG--AGTLTYGELARRANAIAAALRAA-GVAPGDLVAVVMPKGWEQIVAVLGIL 58
Query: 115 YLGAIVIPMNP---------LLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVV 165
GA +P++P +L+ + + +T + + VV
Sbjct: 59 LAGAAYVPIDPDQPAERRAAILARAGARAVLTDPG------------LAQPEEAPDLLVV 106
Query: 166 AVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHG 225
A A + P + D A ++++SG+TG KG +TH
Sbjct: 107 ADDA-----------------AAAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMITHR 149
Query: 226 NFIAAVELFV-RFEASQYEYLSSEAVFLAVLPMFHIYGLSLFAL-GLLSLGPSVVVM--- 280
+ + RF + LA+ + LS++ + G LS G ++V+
Sbjct: 150 AAVNTILDVNRRFG------VGPADRVLALSALHF--DLSVYDIFGALSAGAALVLPDEA 201
Query: 281 RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVS-SGAAPANSKI 339
RR + +++ ++GVT + VP ++ L A L SL+ V SG
Sbjct: 202 RRRDPDHWAELVQRHGVTVWNSVPALMDMLLTYA-EDAARLLPSLRLVMLSG-------- 252
Query: 340 IEDFVG---------AFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSV---------- 380
D++ P + G TE ++ +S Y+ +
Sbjct: 253 --DWIPLDLPRRLRALAPGARLVSLGGATE-ASI---------WSIYYPIDDVDPDWRSI 300
Query: 381 --GLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMST--IDKEG-- 434
G PN + V+D +G P GEL++ G G Y + + T + G
Sbjct: 301 PYGKPLPNQKFYVLD-EDGRDCPDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGER 359
Query: 435 WLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILD---VAVTGAM 491
TGD+ + DG + + R +K GY++ ++E L HP + V V
Sbjct: 360 LYRTGDLGRYRPDGTIEFLGRADHQVKIRGYRVELGEIEAALARHPGVQRAVVVVVGDGG 419
Query: 492 DKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRE 551
K L AFVV DG+ + A + LA+ + Y R V ++P +A GKV R+
Sbjct: 420 AKAL----AAFVVAEDGAAVDAAVLRAALAELLPAYMVPSRFVVLDALPLTANGKVDRKA 475
Query: 552 L 552
L
Sbjct: 476 L 476
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 3e-37
Identities = 137/530 (25%), Positives = 219/530 (41%), Gaps = 62/530 (11%)
Query: 57 TALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYL 116
AL+D +S +L LV +A+ L G+ +GD V + LPN I + V+FLA L
Sbjct: 27 VALIDE--DRPLSRAELRALVDRLAAWLAAQ-GVRRGDRVAVWLPNCIEWVVLFLACARL 83
Query: 117 GAIVIPMNPLLSVSEIKKQVTLCKT----------KISLAFTIYENVDKLRSWGTTPVVA 166
GA VI +N E+ + + I I V + +A
Sbjct: 84 GATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDF-AAILAAVPP-DALPPLRAIA 141
Query: 167 VPENLVNDFKEGRFSDFHKLIAGKFD-----LVERPVIRQQDTAAILYS-SGTTGASK-- 218
V ++ + +L A ER D A+L++ SGTT K
Sbjct: 142 VVDDAADATPAPAPGARVQLFALPDPAPPAAAGERAA--DPDAGALLFTTSGTTSGPKLV 199
Query: 219 ----GAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLG 274
L H IA Y Y AV LA LP ++G S LG L+ G
Sbjct: 200 LHRQATLLRHARAIARA----------YGY-DPGAVLLAALPFCGVFGFST-LLGALAGG 247
Query: 275 PSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNS--LKSLKQVSSGA 332
+V F+A+ + + ++ VTH +L + A G S + +
Sbjct: 248 APLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA----GERADFPSARLFGFAS 303
Query: 333 -APANSKIIEDF-VGAFPHVDFIQG-YGMTESTAVGTRGFNTKKFS-KYFSVGLLA-PNI 387
APA ++ P + G YG +E A+ T S + G A P
Sbjct: 304 FAPALGELAALARARGVP----LTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEA 359
Query: 388 QAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDED 447
+ + D +G LP G +GE+ +R P M+ Y++N DAT + +G+ TGD+ Y D
Sbjct: 360 RVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGD 419
Query: 448 GYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGE-IPVAFVVRR 506
G R+ + ++ G+ ++PA++E L P + V GA G+ +PVAFV+
Sbjct: 420 GQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRD--GKTVPVAFVIPT 477
Query: 507 DGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAG---KVLRRELR 553
DG++ EA ++ + +A +K RV ++ P + + K+ + LR
Sbjct: 478 DGASPDEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLR 527
|
Length = 540 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 3e-37
Identities = 94/361 (26%), Positives = 158/361 (43%), Gaps = 29/361 (8%)
Query: 207 ILYSSGTTGASKGAELTHGNFIAAVEL---FVRFEASQYEYLSSEA------VFLAVLPM 257
+LY+ GTTG KG + + F E + E A FL P+
Sbjct: 8 MLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLPACPL 67
Query: 258 FHIYGLSLFALGLLSLGPSVVVM--RRFEASEMLKVIDKYGVTHFPVV-----PPILMAL 310
H G L AL L G +VV++ +F+ + + ++K+ V +V P+L AL
Sbjct: 68 MHGAGQWL-ALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFARPLLEAL 126
Query: 311 TKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFN 370
A + L SL+ +SS A + ++ + + P++ + G +E+ G+ +
Sbjct: 127 EAAGRY----DLSSLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGS-SVS 181
Query: 371 TKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWL-RGPGTMKEYINNADATMST 429
+ + G V+D +G +PPGS W+ RG Y + + T T
Sbjct: 182 RAGGAS--ATGKFELGPDTVVLD-EDGSEVPPGSGEVGWIARGGRVPLGYYKDPEKTAKT 238
Query: 430 ---IDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVA 486
ID + GD A + DG + ++ R I G ++ P ++E L HP++ D
Sbjct: 239 FREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADAL 298
Query: 487 VTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGK 546
V G D+ G+ VA V R G+ L A + D+ Q +A YK R +V ++P++ +GK
Sbjct: 299 VVGVPDERWGQRVVAVVQLRAGAGLDLAELRDHCRQHLAGYKLPRAIVVVDTVPRAPSGK 358
Query: 547 V 547
Sbjct: 359 A 359
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 4e-37
Identities = 103/385 (26%), Positives = 168/385 (43%), Gaps = 49/385 (12%)
Query: 194 VERPVIRQQDTAAILYSSGTTGASKGAELTHGNF-IAAVELFVRFEASQYEYLSSEAVFL 252
V D ++++SGT+G K TH A V L RF L + V
Sbjct: 144 PPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFG------LGPDDVCY 197
Query: 253 AVLPMFH----IYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVV--PPI 306
+P+FH + G ++ L+ G S+ + R+F AS L + +YG T+ V P
Sbjct: 198 VSMPLFHSNAVMAGWAV----ALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKP-- 251
Query: 307 LMALTKAAKGLCGNSLKSLKQV--SSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAV 364
++ A ++ L+ V + GA I F F + G+G TE
Sbjct: 252 -LSYVLATPERPDDADNPLRIVYGNEGAPGD----IARFARRF-GCVVVDGFGSTEGGVA 305
Query: 365 GTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPG------------STGELW-LR 411
TR +T + +G L P + +VD G PP + GEL
Sbjct: 306 ITRTPDTPPGA----LGPLPPGV--AIVDPDTGTECPPAEDADGRLLNADEAIGELVNTA 359
Query: 412 GPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPAD 471
GPG + Y N+ +A + + G +GD+AY D DGY Y RL + ++ +G + A
Sbjct: 360 GPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAP 418
Query: 472 LETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQR--VAPYKK 529
+E +L+ +P+ +VAV D V+G+ +A +V G+ A ++LA + + P +
Sbjct: 419 IERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQW 478
Query: 530 VRRVVFTKSIPKSAAGKVLRRELRK 554
V +P++A KVL+R+L
Sbjct: 479 PSYVRVCAELPRTATFKVLKRQLSA 503
|
Length = 529 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 7e-37
Identities = 147/547 (26%), Positives = 239/547 (43%), Gaps = 72/547 (13%)
Query: 53 HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLA 112
H R ++V Y+ + Q + + +AS L I G V ++ PN P ++ A
Sbjct: 33 HPTRKSVVHGSVRYT--WAQTYQRCRRLASALAKR-SIGPGSTVAVIAPN---IPAMYEA 86
Query: 113 LLYL---GAIVIPMNPLLSVSEIKKQVTLCKTKISLA----FTIYENV-----DKLRSWG 160
+ GA+V +N L+ I + K+++ + FT+ E +K +S
Sbjct: 87 HFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSF 146
Query: 161 TTPVVAV-------PENLVNDFKEG--RFSDFHKLIAGKFDLVERPVIRQQDTAAILYSS 211
P++ V P++L +G + F L G + +P + + A+ Y+S
Sbjct: 147 KPPLLIVIGDPTCDPKSLQYALGKGAIEYEKF--LETGDPEFAWKPPADEWQSIALGYTS 204
Query: 212 GTTGASKGAELTH-GNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGL 270
GTT + KG L H G ++ A+ + + ++ AV+L LPMFH G F L
Sbjct: 205 GTTASPKGVVLHHRGAYLMALSNALIWG------MNEGAVYLWTLPMFHCNGWC-FTWTL 257
Query: 271 LSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQV-S 329
+L + + +R+ A + I YGVTHF P +L + A K L + V +
Sbjct: 258 AALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMT 317
Query: 330 SGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGT----------------RGFNTKK 373
+GAAP S + F YG++E+ T N ++
Sbjct: 318 AGAAPPPSVLFAMSEKGF---RVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQ 374
Query: 374 FSKYFSVGLLAPNIQAKVVDWVNGCFLPP-GST-GELWLRGPGTMKEYINNADATMSTID 431
+Y +GL VVD +P G T GE+ +RG MK Y+ N A
Sbjct: 375 GVRY--IGLE----GLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF- 427
Query: 432 KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAM 491
GW H+GD+ DGY+ I DR K++I G IS ++E V+ HP +L+ +V
Sbjct: 428 ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARP 487
Query: 492 DKVLGEIPVAFVVRRDGSTLTEAA-----VIDYLAQRVAPYKKVRRVVFTKSIPKSAAGK 546
D+ GE P AFV + G ++ A ++ + +R+ Y + VVF +PK+A GK
Sbjct: 488 DERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATGK 546
Query: 547 VLRRELR 553
+ + LR
Sbjct: 547 IQKHVLR 553
|
Length = 567 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 1e-36
Identities = 100/384 (26%), Positives = 168/384 (43%), Gaps = 62/384 (16%)
Query: 195 ERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSS------- 247
+RP + IL +SGTTG KGA R L +
Sbjct: 189 QRPEPTGRKGRVILLTSGTTGTPKGAR--------------RSGPGGIGTLKAILDRTPW 234
Query: 248 --EAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPP 305
E + V PMFH +G S L SL ++V RRF+ L +ID++ T VVP
Sbjct: 235 RAEEPTVIVAPMFHAWGFSQLVLAA-SLACTIVTRRRFDPEATLDLIDRHRATGLAVVPV 293
Query: 306 ILMALTKA-AKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAV 364
+ + A+ S +SL+ ++ + ++ F+ F V + Y TE+ +
Sbjct: 294 MFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIY-NNYNATEAGMI 352
Query: 365 GT-------RGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG----- 412
T +T G A + +++D + +P G G +++R
Sbjct: 353 ATATPADLRAAPDT--------AGRPAEGTEIRILD-QDFREVPTGEVGTIFVRNDTQFD 403
Query: 413 ---PGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISP 469
G+ K++ +G++ +GD+ Y DE+G L++V R E+I G + P
Sbjct: 404 GYTSGSTKDFH------------DGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYP 451
Query: 470 ADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKK 529
++E L HP++ + AV G D+ G+ AFVV + G++ T + ++ +A YK
Sbjct: 452 IEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVRDNLANYKV 511
Query: 530 VRRVVFTKSIPKSAAGKVLRRELR 553
R +V +P+ A GK+LRREL+
Sbjct: 512 PRDIVVLDELPRGATGKILRRELQ 535
|
Length = 537 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 8e-36
Identities = 134/532 (25%), Positives = 205/532 (38%), Gaps = 95/532 (17%)
Query: 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
ALV S++Y +L +A LR G+ GD V LLL S V LA+L
Sbjct: 3 AIALVYG--DRSLTYAELNERANRLARRLRAR-GVGPGDVVALLLERSPELVVAILAILK 59
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDF 175
GA +P++P + + ++ L S LV
Sbjct: 60 AGAAYVPLDPAYPAERLAFMLEDSGARVLLT---------DESLAPLARADQLP-LVILE 109
Query: 176 KEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFV 235
+E D P + D A ++Y+SG+TG KG + H V V
Sbjct: 110 EELDAED---------AGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPH----RGVVRLV 156
Query: 236 RFEASQYEYLSSEAVFLAVLPM------FHIYGLSLFALGLLSLGPSVVV-MRRFEASEM 288
R + Y L + FL + P+ F I+G L L+ + ++ R
Sbjct: 157 R--NTNYIALDPDDRFLQLSPLSFDASTFEIWGALLNGGRLVLIDKETLLDPDRLAR--- 211
Query: 289 LKVIDKYGVTHFPVVPPILMALTKA------AKGLCGNSLKSLKQVSSGAAPANSKIIED 342
+I + GVT ++ LT A + +L L+Q+ G + +
Sbjct: 212 --LIAEQGVT--------VLWLTAALFNQLVDEDP--EALAGLRQLLVGGDVLSPAHVRR 259
Query: 343 FVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSV------------GLLAPNIQAK 390
+ A P + I GYG TE+T FS + G PN
Sbjct: 260 VLAACPGLRLINGYGPTENTT----------FSTCHVITRLDEAADSIPIGRPIPNTTVY 309
Query: 391 VVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT----MSTIDKEG--WLHTGDIAYF 444
++D G +P G GEL++ G G Y+N + T + G TGD+A +
Sbjct: 310 ILD-EEGQPVPIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARW 368
Query: 445 DEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVT----GAMDKVLGEIPV 500
DG + + R+ +K G++I ++E L+ HP + + AV A DK L V
Sbjct: 369 RPDGNIEFLGRIDRQVKIRGFRIELGEIEQALLQHPGVREAAVLVREDAAGDKRL----V 424
Query: 501 AFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
A+VV R L A + +LA+R+ Y V +P +A GKV RR L
Sbjct: 425 AYVVARGA--LDAAELRAHLAERLPAYMVPAAFVVLDELPLTANGKVDRRAL 474
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 8e-35
Identities = 133/498 (26%), Positives = 204/498 (40%), Gaps = 69/498 (13%)
Query: 68 ISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLL 127
+SY +L VA+ L G+ GD V LLP + V LA +GAI +P+
Sbjct: 1 LSYAELREQSARVANLLADL-GVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAF 59
Query: 128 SVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLI 187
I+ +L G VV N
Sbjct: 60 GPKAIEY--------------------RLGHSGAKVVVTNAANR---------------- 83
Query: 188 AGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSS 247
GK D D A +Y+SGTTG KG + N +AA ++R+ L
Sbjct: 84 -GKLD---------DDLFAQMYTSGTTGLPKGVPVPL-NALAAFYAYMRYAID----LRD 128
Query: 248 EAVFLAVLPMFHIYGLSLFALGLLSLG-PSVVVMRRFEASEMLKVIDKYGVTHFPVVPPI 306
+ VF + YGL G L++G +V + F A V+++ GVT+F P
Sbjct: 129 DDVFWNIADPGWAYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTA 188
Query: 307 LMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDF---VGAFPHVDFIQGYGMTESTA 363
L A L+ SS P N +++ F +G H YG TE+
Sbjct: 189 YRMLMAAGADAAARIKLKLRVASSAGEPLNPEVVRWFQANLGVTIH----DHYGQTETGM 244
Query: 364 VGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLR----GPGTMKEY 419
+ S+GL P + V+D +G L G G+L + Y
Sbjct: 245 PVGNHHALAHEVRAGSMGLPLPGYRIAVLD-DDGQPLADGEPGQLAIDVASSPLLWFSGY 303
Query: 420 INNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICH 479
++ + T I W TGD+ DEDGY + + R +VI GY+I P D+E+ L+ H
Sbjct: 304 WDDPEKTAELIA-GRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEH 362
Query: 480 PEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVID---YLAQRVAPYKKVRRVVFT 536
P + + AV G D + GEI AFVV ++G ++ + ++ +R++ + R V F
Sbjct: 363 PAVAEAAVVGVPDPLRGEIVKAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYPREVEFV 422
Query: 537 KSIPKSAAGKVLRRELRK 554
++PK+ +GK+ R LR+
Sbjct: 423 PALPKTPSGKIQRFLLRQ 440
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 1e-34
Identities = 93/383 (24%), Positives = 152/383 (39%), Gaps = 57/383 (14%)
Query: 198 VIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVF------ 251
D A ++Y+SG+TG KG +TH N F+R E + + V
Sbjct: 95 TSSPDDPAYVIYTSGSTGKPKGVVITHRNICN----FLRAEGAILGIRPGDRVLQFASIA 150
Query: 252 --LAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEML-KVIDKYGVTHFPVVPPILM 308
+++L +F L G ++V+ E L + +++ VT + P +L
Sbjct: 151 FDVSILEIFTT----------LLAGGTLVIPPEELRLEDLAEFLNRLRVTVAHLTPSLLA 200
Query: 309 ALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRG 368
L + SL+ + G +++ + + YG TE+T T
Sbjct: 201 LLDPED-------VPSLRTLILGGEACPQALVDRW---SKPRRLLNTYGPTEATVTATAS 250
Query: 369 FNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT-M 427
T K ++G PN V+D +P G+ GEL + GPG + Y+N + T
Sbjct: 251 RLTP--GKPVNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAE 308
Query: 428 STIDKEGWL--------HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICH 479
I WL TGD+ + EDG L + R + +K G +I ++E VL
Sbjct: 309 KFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVLRAL 368
Query: 480 PEILDVAVT----GAMDKVLGEIPVAFVVRRDGST-----LTEAAVIDYLAQRVAPYKKV 530
P ++ AV K L VAF+ + + A + L +R+ Y
Sbjct: 369 PGVVVAAVVLLLDDPGGKQL----VAFLAVDGAAGGEPADVDIALLRSALRERLPSYMVP 424
Query: 531 RRVVFTKSIPKSAAGKVLRRELR 553
V +P +A+GKV R+ LR
Sbjct: 425 SVYVPLDELPLTASGKVDRKALR 447
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 1e-34
Identities = 157/610 (25%), Positives = 254/610 (41%), Gaps = 89/610 (14%)
Query: 7 TFSSERINTSQWYSPETGIYHSKHP---------SVNLPANDSLLDVDSFIFSHKHNGR- 56
F +E+ N WY P + + +P +NL N VD H +GR
Sbjct: 5 AFWAEQANLIDWYKPWEKVLDNSNPPFTRWFVGGRLNLCYNA----VDR----HIEDGRG 56
Query: 57 --TALV-DS-LSGY--SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVI- 109
AL+ DS ++G + +Y +L+ V +A LR G+ +GD V+ IY P+I
Sbjct: 57 DQIALIYDSPVTGTKRTYTYAELYDEVSRLAGVLRKL-GVVKGDRVI------IYMPMIP 109
Query: 110 -----FLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTK--ISLAFTIYEN--------VD 154
LA +GAI + + E+ ++ K K ++ +F I +D
Sbjct: 110 EAVIAMLACARIGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLD 169
Query: 155 KLRSWGTTPVVAV----PENLVNDFKEGRFSDFHKLIAGKFDLVERPV----IRQQDTAA 206
K V + K GR D+ +L+A RPV + D
Sbjct: 170 KALELSQHKPHKVLILNRGQVPAPLKPGRDLDWAELMAK-----ARPVDCVPVESTDPLY 224
Query: 207 ILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY-LSSEAVFLAVLPMFHIYGLSL 265
ILY+SGTTG KG G + A++ +R Y + VF A + + G S
Sbjct: 225 ILYTSGTTGKPKGVVRDTGGYAVALKWSMR-----NIYGIKPGDVFWAASDVGWVVGHSY 279
Query: 266 FALGLLSLGPSVVV-----MRRFEASEMLKVIDKYGVTHFPVVPPILMALTKA-AKGLCG 319
G L G + V+ + +A +VI++YGV P + A+ K G
Sbjct: 280 IVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYI 339
Query: 320 N--SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTES---TAVGTRGFNTKKF 374
L SL+ + +S +E V I + TE+ G
Sbjct: 340 KKYDLSSLRALFLAGERLDSPTLEWIEKTLG-VPVIDHWWQTETGWPITANCVGLELLP- 397
Query: 375 SKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP---GTMKEYINNADATMSTI- 430
K S G P +V+D G L PG G + ++ P G + + +
Sbjct: 398 IKPGSPGKPVPGYDVQVLD-ETGEELGPGELGNIVIKLPLPPGCLLTLWGDDERFKKLYL 456
Query: 431 -DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTG 489
G+ TGD Y DEDGYL+++ R +VI G+++S ++E ++ HP++ + AV G
Sbjct: 457 NKFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVG 516
Query: 490 AMDKVLGEIPVAFVVRRDGSTLTEAA----VIDYLAQRVAPYKKVRRVVFTKSIPKSAAG 545
D++ G++P+ VV +D + ++ + +++ P R VVF K +PK+ +G
Sbjct: 517 VRDELKGQVPLGLVVLKDDCKIDADQLENEIVALVREQIGPVAAFRNVVFVKRLPKTRSG 576
Query: 546 KVLRRELRKF 555
K+LRR LRK
Sbjct: 577 KILRRTLRKI 586
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 1e-34
Identities = 129/574 (22%), Positives = 212/574 (36%), Gaps = 137/574 (23%)
Query: 64 SGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPM 123
S SY +L + + +GLR G+ GD+V+L L + F F A + G + +P+
Sbjct: 36 SEEFQSYAELLEEAERILAGLRAL-GLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPV 94
Query: 124 NPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRS-WGT--TPVVAVPENLVNDFKEGRF 180
+ E V KLR+ W +PV+ LV
Sbjct: 95 AVPPTYDEPNAAVA-----------------KLRNIWELLGSPVILTDAALVAALAG--- 134
Query: 181 SDFHKLIAGKFDLVERPVI-----------------RQQDTAAILYSSGTTGASKGAELT 223
+ + L V+ R D A +L +SG+TG K LT
Sbjct: 135 ------LRTRAGLEALRVLAIEELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLT 188
Query: 224 HGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLG-------PS 276
H N +A V Q + + V L +P+ H+ G+ + L + LG
Sbjct: 189 HRNILARSAGTV-----QVNGFTPDDVSLNWMPLDHVGGIVMLHLRDVYLGCQQIHVPTD 243
Query: 277 VVVMR--RFEASEMLKVIDKYGVTHFPVVPPILMAL----TKAAKGLCGNSLKSLKQVSS 330
++ R+ L +ID+Y VT P AL + + + L SL+ + +
Sbjct: 244 YILADPLRW-----LDLIDRYRVTI-TWAPNFAFALLNDALERIEDRSWD-LSSLRYIIN 296
Query: 331 GAAPANSKIIEDFVGAF-PH---VDFIQ-GYGMTESTA--VGTRGFNTKKF--------- 374
+K I F+ P+ D I+ +GM+E+ + +RGF T
Sbjct: 297 AGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDTGGVLVDSL 356
Query: 375 --------------SKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYI 420
+ +G P + ++VD +G LP G G L +RGP Y
Sbjct: 357 TGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD-EDGALLPEGEVGRLQVRGPTVTSGYY 415
Query: 421 NNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHP 480
N +A ++GW TGD+ + DG L I R K++I NG ++E +
Sbjct: 416 RNPEANAEAFTEDGWFRTGDLGFLH-DGRLTITGREKDMIIINGVNYYNHEIEAAV---E 471
Query: 481 EILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL------AQRVAPYKKVRRVV 534
++ V + A V RD + T+ + ++ + A + +R V
Sbjct: 472 QVPGVEPSFT---------AACAV-RDAGSGTDELAVFFVPRYDLDDRLAALLRAIRTHV 521
Query: 535 FTK--------------SIPKSAAGKVLRRELRK 554
K PK++ GK+ R +LRK
Sbjct: 522 ARKIGIAPAYVIPLAKEDFPKTSLGKIQRAQLRK 555
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 7e-34
Identities = 135/547 (24%), Positives = 225/547 (41%), Gaps = 91/547 (16%)
Query: 64 SGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI--VI 121
+I+Y +L+ V A+ L+ G+ +GD V + +P P+ LA +GAI V+
Sbjct: 75 ESRTITYRELYREVCRFANVLKSL-GVKKGDRVAIYMPMIPELPIAMLACARIGAIHSVV 133
Query: 122 PMNPLLSVSEIKKQVTLCKTKISL----------AFTIYENVDKLRSWGTTPV--VAVPE 169
S + ++ K+K+ + + E VD+ V V V +
Sbjct: 134 FAG--FSAEALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEALE-KCPSVEKVIVVK 190
Query: 170 NLVND--FKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNF 227
+ EGR +H L+A E + +D ILY+SG+TG KG T G +
Sbjct: 191 RTGGEVPMVEGRDVWWHDLMAKASPYCEPEPMDAEDPLFILYTSGSTGKPKGVVHTTGGY 250
Query: 228 IAAVELFVRFEASQYEYLSSEAVFLAVLPMFH-------------IYGLSLFALGLLSLG 274
+ Y + + VF H I G S G L+ G
Sbjct: 251 LV------------YAATTFKYVF-----DIHPDDVYWCTADIGWITGHSYIVYGPLANG 293
Query: 275 PSVVVMRRFE-------ASEMLKVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLK 326
+ V+ +E ++++KY VT F P + L + + L SL+
Sbjct: 294 ATTVM---YEGAPDYPDPGRWWEIVEKYKVTIFYTAPTAIRMLMRFGDEWPKKHDLSSLR 350
Query: 327 QVSSGAAPANS-------KIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKF----- 374
+ S P N ++I P VD + TE T G
Sbjct: 351 LLGSVGEPINPEAWMWYYEVIGK--ERCPIVD---TWWQTE-----TGGHMITPLPGATP 400
Query: 375 SKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG--PGTMKEYINNADATMSTIDK 432
K S P ++ +VD G + G G L ++ PG ++ + + + T
Sbjct: 401 LKPGSATRPFPGVEPAIVD-EEGNEVEGGVEGYLVIKRPWPGMLRTIYGDHERYVKTYFS 459
Query: 433 E--GWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGA 490
+ G+ TGD A DEDGY +I+ R+ +VI +G+++ A++E+ L+ HP + + AV G
Sbjct: 460 KFPGYYFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGK 519
Query: 491 MDKVLGEIPVAFVVRRDG---STLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKV 547
D+V GE AFV +DG S + ++ + + P ++F +PK+ +GK+
Sbjct: 520 PDEVKGEAIYAFVTLKDGVEPSDELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKI 579
Query: 548 LRRELRK 554
+RR LRK
Sbjct: 580 MRRILRK 586
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 9e-34
Identities = 111/403 (27%), Positives = 181/403 (44%), Gaps = 57/403 (14%)
Query: 183 FHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGN-----FIAAVELFVRF 237
+ L+ + + P + +++ Y+SGTTG KGA +H + + AA+ +
Sbjct: 157 YETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMG- 215
Query: 238 EASQYEYLSSEAVFLAVLPMFHI------YGLSLFALGLLSLGPSVVVMRRFEASEMLKV 291
LS+ L V+PMFH+ Y L L+ GP + + + ++
Sbjct: 216 -------LSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDL------DGKSLYEL 262
Query: 292 IDKYGVTHFPVVPPI-LMALTKA-AKGLCGNSLKSLKQVSSGAA--PANSKIIEDFVGAF 347
I+ VT VP + L L GL ++L+ + V G+A PA + ED G
Sbjct: 263 IEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLR--RTVIGGSACPPAMIRTFEDEYG-- 318
Query: 348 PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPN------------IQAKVVDWV 395
V+ I +GMTE + +GT K K+ + L + K+V
Sbjct: 319 --VEVIHAWGMTEMSPLGTL---CKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-D 372
Query: 396 NGCFLP--PGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIV 453
+G LP + G+L +RGP + Y + + +GW TGD+A D DG++ I
Sbjct: 373 DGRELPWDGKAFGDLQVRGPWVIDRYFRGDASPLV----DGWFPTGDVATIDADGFMQIT 428
Query: 454 DRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTE 513
DR K+VIK G IS D+E V + HP + + A E P+ VV+R G+ +T
Sbjct: 429 DRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTR 488
Query: 514 AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFL 556
++ + +VA + VVF +IP +A GK+ + +LR+
Sbjct: 489 EELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQF 531
|
Length = 539 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 4e-33
Identities = 132/502 (26%), Positives = 208/502 (41%), Gaps = 41/502 (8%)
Query: 55 GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114
GRTA++D ++SY +L +S+A L G++ G AV ++ N F A+
Sbjct: 50 GRTAIIDDDG--ALSYRELQRATESLARRLTRD-GVAPGRAVGVMCRNGRGFVTAVFAVG 106
Query: 115 YLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVND 174
LGA V+P++ + L IS E +++ V P
Sbjct: 107 LLGADVVPISTEFRSDALA--AALRAHHISTVVADNEFAERIAGADDAVAVIDPAT---- 160
Query: 175 FKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKG---AELTHGNFIAAV 231
AG + RP + +L +SGTTG KG A V
Sbjct: 161 -------------AGAEESGGRPAVAAPGRI-VLLTSGTTGKPKGVPRAPQLRSAVGVWV 206
Query: 232 ELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKV 291
+ R L + + +PMFH GL + L ++LG +V+ R F+A L
Sbjct: 207 TILDRTR------LRTGSRISVAMPMFHGLGLGMLML-TIALGGTVLTHRHFDAEAALAQ 259
Query: 292 IDKYGVTHFPVVPPILMALTKAAKGL-CGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHV 350
+ F VP +L + + + N L L+ V S + + + F+ + +
Sbjct: 260 ASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDI 319
Query: 351 DFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWL 410
+ GYG TE +G +VG +++D N + P TG +++
Sbjct: 320 LY-NGYGSTE-VGIGALATPADLRDAPETVGKPVAGCPVRILD-RNNRPVGPRVTGRIFV 376
Query: 411 RGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPA 470
G Y + + +D G TGD+ Y D G L+IV R ++I G + P
Sbjct: 377 GGELAGTRYTDGGGK--AVVD--GMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPR 432
Query: 471 DLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKV 530
+E L HP + D AV G D+ G AFVV GS + A + DYL RV+ +++
Sbjct: 433 AVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQP 492
Query: 531 RRVVFTKSIPKSAAGKVLRREL 552
R + SIP++ GKVLR+EL
Sbjct: 493 RDINIVSSIPRNPTGKVLRKEL 514
|
Length = 516 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 1e-32
Identities = 123/527 (23%), Positives = 204/527 (38%), Gaps = 92/527 (17%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPL 126
+S+ +L ++A GL GI +G +L++ S+ F + AL GA+ + ++P
Sbjct: 41 ELSFAELDARSDAIAHGLNAA-GIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVDPG 99
Query: 127 LSVSEIKK-------QVTLCKTKISLAFTIYENVDKLRSWG---TTPVVAVPENLVNDFK 176
+ + +K+ + K LA ++ WG +V V L
Sbjct: 100 MGIKNLKQCLAEAQPDAFIGIPKAHLARRLF-------GWGKPSVRRLVTVGGRL---LW 149
Query: 177 EGRFSD--FHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELF 234
G A F + + D AAIL++SG+TG KG THG F A +E
Sbjct: 150 GGTTLATLLRDGAAAPFPMADLA---PDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEA- 205
Query: 235 VRFEASQYEYLSSEAVFLAVLPMFHIYGLSLF--ALGLLSLGPSVVVMRRFEAS------ 286
+R Y E + L P+F +LF ALG+ S+ P + +
Sbjct: 206 LR---EDYGIEPGE-IDLPTFPLF-----ALFGPALGMTSVIP------DMDPTRPATVD 250
Query: 287 --EMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFV 344
++ I++YGVT+ P +L L + + G L SL++V S AP +IE F
Sbjct: 251 PAKLFAAIERYGVTNLFGSPALLERLGRYGEAN-GIKLPSLRRVISAGAPVPIAVIERFR 309
Query: 345 GAFPH-VDFIQGYGMTES---TAVGTR------------GFNTKKFSKYFSVGLLAPNIQ 388
P + + YG TE+ +++ +R G VG ++
Sbjct: 310 AMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGI-------CVGRPVDGVE 362
Query: 389 AKVVD--------WVNGCFLPPGSTGELWLRGPGTMKEYINNADATMST--IDKEG--WL 436
+++ W + L G GE+ + GP + Y N +AT D +G W
Sbjct: 363 VRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWH 422
Query: 437 HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLG 496
GD+ Y D G L+ R ++ G + E + HP + A+ G
Sbjct: 423 RMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVPG-A 481
Query: 497 EIPVAFVVRRDGSTLTEAAVI---DYLAQRVAPYKKVRRVVFTKSIP 540
+ PV V G +++A+ LA + R + S P
Sbjct: 482 QRPVLCVELEPGVACSKSALYQELRALAAAHPHTAGIERFLIHPSFP 528
|
Length = 552 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 1e-32
Identities = 141/550 (25%), Positives = 216/550 (39%), Gaps = 94/550 (17%)
Query: 51 HKHNGR---TAL--VDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIY 105
H GR AL +D+ +Y +L L A+ L+ G+ +GD V + +P
Sbjct: 52 HADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKEL-GVEKGDRVFIFMPRIPE 110
Query: 106 FPVIFLALLYLGAIVIPM------NPL---LSVSEIKKQVTLCKTKISLAFTIYENV--D 154
L L GAIV P+ + L SE K +T T + E D
Sbjct: 111 LYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLIT---TP-----ALLERKPAD 162
Query: 155 KLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTT 214
L S +V DF+ L+ D + ++D A + Y+SG+T
Sbjct: 163 DLPSLKHVLLVGEDVEE-----GPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGST 217
Query: 215 GASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFH---IY---------- 261
G KG H + Y + + V H +Y
Sbjct: 218 GKPKGVLHVHNAMLQ-------------HYQTGKYVL-----DLHEDDVYWCTADPGWVT 259
Query: 262 GLS--LFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLC- 318
G S +FA L+ +V+ RF ++++ Y VT + P + L A L
Sbjct: 260 GTSYGIFA-PWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVK 318
Query: 319 GNSLKSLKQVSSGAAPANSKII---EDFVGAFPHVDFIQGYGMTESTA---VGTRGFNTK 372
L SL+ + S P N +++ G H + MTE+ + K
Sbjct: 319 KYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIH----DNWWMTETGGIMIANYPAMDIK 374
Query: 373 KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG--PGTMKEYINNADATMSTI 430
S +G P I+A +VD G LPP G L ++ P M+ NN +
Sbjct: 375 PGS----MGKPLPGIEAAIVD-DQGNELPPNRMGNLAIKKGWPSMMRGIWNN-PEKYESY 428
Query: 431 DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGA 490
W +GD AY DEDGY + R+ +VIK +G ++ P ++E+ L+ HP + + V G
Sbjct: 429 FAGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGK 488
Query: 491 MDKVLGEIPVAFVVRRDGSTLTEA---AVIDY----LAQRVAPYKKVRRVVFTKSIPKSA 543
D V GEI AFV R G +E + + L AP R + F +PK+
Sbjct: 489 PDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAP----REIEFKDKLPKTR 544
Query: 544 AGKVLRRELR 553
+GK++RR L+
Sbjct: 545 SGKIMRRVLK 554
|
Length = 570 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (327), Expect = 2e-32
Identities = 141/515 (27%), Positives = 222/515 (43%), Gaps = 43/515 (8%)
Query: 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
R A++ + +G +SY QL ++A L + G+ GD V LL NS V+ A L
Sbjct: 13 RPAVIVAETGEQVSYRQLDDDSAALARVL-YDAGLRTGDVVALLSDNSPEALVVLWAALR 71
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDF 175
G + +N L+ E V ++ +A + G V L F
Sbjct: 72 SGLYITAINHHLTAPEADYIVGDSGARVLVASAALD--------GLAAKVGADLPLRLSF 123
Query: 176 KEGR---FSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKG--AELTHGNFIAA 230
G F F +AG + Q A +LYSSGTTG KG +L + A
Sbjct: 124 G-GEIDGFGSFEAALAG----AGPRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAP 178
Query: 231 VELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLK 290
+ V + Y+ +S ++ + P++H L ++ + +LG +VV+ +RF+A L
Sbjct: 179 GDPIVAIARAFYD-ISESDIYYSSAPIYHAAPLRWCSM-VHALGGTVVLAKRFDAQATLG 236
Query: 291 VIDKYGVTHFPVVPPILMALTKA-AKGLCGNSLKSLKQVSSGAAPANSKIIE---DFVG- 345
+++Y +T +VP + + L K A + SL+ V AAP + D++G
Sbjct: 237 HVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGP 296
Query: 346 -AFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSV-GLLAPNIQAKVVDWVNGCFLPPG 403
+ + + +GMT + + + S SV G L + D +G LP G
Sbjct: 297 IVYEYYSSTEAHGMT---FIDSPDWLAHPGSVGRSVLGDL------HICD-DDGNELPAG 346
Query: 404 STGELWLRGPGTMKEYINNADATMSTIDKEG--WLHTGDIAYFDEDGYLYIVDRLKEVIK 461
G ++ Y+N+ + T + W GD+ DEDGYLY+ DR +I
Sbjct: 347 RIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMII 406
Query: 462 YNGYQISPADLETVLICHPEILDVAVTGAMDKVLGE---IPVAFVVRRDGSTLTEAAVID 518
G I P + E L HP + DVAV G D +GE + V GS +ID
Sbjct: 407 SGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELID 466
Query: 519 YLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
Y R+A YK R V F +P++ GK+++ LR
Sbjct: 467 YTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501
|
Length = 501 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 4e-32
Identities = 137/588 (23%), Positives = 231/588 (39%), Gaps = 105/588 (17%)
Query: 38 NDSLLDVDSFIFSHKHNGRTALV----DSLSGYSISYPQLFPLVQSVASGLRHHFGISQG 93
N S VD + + + A++ + I+Y +L V A+ L+ G+ +G
Sbjct: 57 NVSYNCVDRHLEARPD--KVAIIWEGDEPGEVRKITYRELHREVCRFANVLKS-LGVKKG 113
Query: 94 DAVLLLLPNSIYFPVIFLALLYLGAI--VIPMNPLLSVSEIKKQVTLCKTKISL------ 145
D V + +P + LA +GAI V+ S + ++ K+ +
Sbjct: 114 DRVAIYMPMIPEAAIAMLACARIGAIHSVVFGG--FSAEALADRINDAGAKLVITADEGL 171
Query: 146 ----AFTIYENVDKLRSWGTTPVVAVPENLV-------NDFKEGRFSDFHKLIAGKFDLV 194
+ VD+ V V LV + EGR +H L+A
Sbjct: 172 RGGKVIPLKAIVDEALEKCPVSVEHV---LVVRRTGNPVPWVEGRDVWWHDLMAKASAYC 228
Query: 195 ERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAV 254
E + +D ILY+SG+TG KG T G ++ Y ++ + VF
Sbjct: 229 EPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLL------------YAAMTMKYVF--- 273
Query: 255 LPMFH-------------IYGLSLFALGLLSLGPSVVVMRRFE-------ASEMLKVIDK 294
I G S G L+ G + V+ FE ++I+K
Sbjct: 274 --DIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVM---FEGTPTYPDPGRFWEIIEK 328
Query: 295 YGVTHFPVVPPILMALTKAAKGLCGN-SLKSLKQVSSGAAPANSKIIE---DFVGAFPHV 350
+ VT F P + AL + L SL+ + S P N + VG
Sbjct: 329 HKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGK-ERC 387
Query: 351 DFIQGYGMTES---------TAVGTR-GFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFL 400
+ + TE+ A T+ G T F I+ VVD G +
Sbjct: 388 PIVDTWWQTETGGIMITPLPGATPTKPGSATLPF----------FGIEPAVVD-EEGNPV 436
Query: 401 P-PGSTGELWLRG--PGTMKEYINNADATMSTIDK--EGWLHTGDIAYFDEDGYLYIVDR 455
PG G L ++ PG ++ + + + T G+ TGD A D+DGY++I R
Sbjct: 437 EGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGR 496
Query: 456 LKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTE-- 513
+ +VI +G+++ A++E+ L+ HP + + AV G D + G+ AFV +DG +
Sbjct: 497 VDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDEL 556
Query: 514 -AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560
+ ++ + + P K ++ F +PK+ +GK++RR LRK +
Sbjct: 557 RKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGEE 604
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 8e-31
Identities = 121/521 (23%), Positives = 194/521 (37%), Gaps = 93/521 (17%)
Query: 81 ASGLRHHF---GISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVT 137
A+ L H+ G+ GD V + N I + L A+ + +N E+
Sbjct: 38 ANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVEDEL----- 92
Query: 138 LCKTKISLAFTIYENVD----------------------KLRSWGTTPVVAVPENLVNDF 175
+ ++ D KLR+ V V + ND
Sbjct: 93 ---------RYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTL-----VVVEDGSGNDL 138
Query: 176 KEGRFSDFHKLIAGKFDLVERPVI-RQQDTAAILYSSGTTGASKGAELTHGN-FIAAVE- 232
G D+ +A ER R D +LY+ GTTG KG + F +
Sbjct: 139 LPGAV-DYEDALAAGSP--ERDFGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGG 195
Query: 233 -LFVRFEASQYEYLSSEAV-------FLAVLPMFHIYGLSLFALGLLSLGPSVVV--MRR 282
F E + E ++ P+ H G A L G +VV+ R
Sbjct: 196 RDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWA-AFAALFSGQTVVLLPDVR 254
Query: 283 FEASEMLKVIDKYGVTHFPVV-----PPILMALTKAAKGLCGNSLKSLKQVSSGAAPANS 337
F+A E+ + I++ V +V P+L AL L SL ++SG A +
Sbjct: 255 FDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPY----DLSSLFAIASGGALFSP 310
Query: 338 KIIEDFVGAFPHVDFIQGYGMTES----TAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVD 393
+ E + P+V G +E+ + +G F++G + V+D
Sbjct: 311 SVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKG-AVHTGGPRFTIG-----PRTVVLD 364
Query: 394 WVNGCFLPPGSTGELWL--RGP---GTMKEYINNADATMST---IDKEGWLHTGDIAYFD 445
+G + PGS W+ RG G Y + + T T ID + GD A +
Sbjct: 365 -EDGNPVEPGSGEIGWIARRGHIPLG----YYKDPEKTAETFPTIDGVRYAIPGDRARVE 419
Query: 446 EDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVR 505
DG + ++ R I G ++ P ++E L HP++ D V G D+ G+ VA V
Sbjct: 420 ADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQL 479
Query: 506 RDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGK 546
R+G+ A + + +A YK R + F + +S AGK
Sbjct: 480 REGARPDLAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGK 520
|
Length = 533 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-30
Identities = 130/544 (23%), Positives = 217/544 (39%), Gaps = 108/544 (19%)
Query: 81 ASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCK 140
A L GI+ V ++ N + A+ +GA+ P+N L +I + +
Sbjct: 52 AHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAE 111
Query: 141 TKISLA--------FTIYENVDKLR-------SWGTTPVVAVPENLVNDFKEGRFSDFHK 185
++ +A I + +R S + +PE + + +
Sbjct: 112 DEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGI-------KVYSYEA 164
Query: 186 LIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYL 245
L+ G+ + + P + + AAI YS+GTTGA KG +H + L++ ++
Sbjct: 165 LLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRS------LYL--QSLSLRTT 216
Query: 246 SSEAV-----FLAVLPMFHI--YGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDK---- 294
S AV FL +P++H+ +G+ L A +S P V A + K+I
Sbjct: 217 DSLAVTHGESFLCCVPIYHVLSWGVPLAAF--MSGTPLVFPGPDLSAPTLAKIIATAMPR 274
Query: 295 --YGV--------THFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFV 344
+GV H+ PP M+L + G S P K E+
Sbjct: 275 VAHGVPTLWIQLMVHYLKNPPERMSLQEIYVG------------GSAVPPILIKAWEERY 322
Query: 345 GAFPHVDFIQGYGMTESTAVGT-----RGFNTKKFSKY-FSVGLLAPNIQAKVVDWVNGC 398
G VD + +GMTE++ VGT G + + Y S G +++ ++V+
Sbjct: 323 G----VDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVNDGQVM 378
Query: 399 FLPPGSTGELWLRGPGTMKEYINNA----DATMSTIDKE------------GWLHTGDIA 442
+ GE+ +RG Y ++ ST E GWL TGD+
Sbjct: 379 ESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVG 438
Query: 443 YFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAF 502
DG+L I DR ++VI+ G I A LE ++ PE+++ AV G D GE P+A
Sbjct: 439 SVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAV 498
Query: 503 VVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVV----------FTKSIPKSAAGKVLRREL 552
V G T A+R+ ++R + F I K++ GK +++L
Sbjct: 499 TVLAPGIEPTRET-----AERLR--DQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDL 551
Query: 553 RKFL 556
R+ L
Sbjct: 552 RQHL 555
|
Length = 576 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-30
Identities = 139/545 (25%), Positives = 215/545 (39%), Gaps = 124/545 (22%)
Query: 68 ISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLL 127
ISY QLF V L+ GI GD V+ + ++ F +F A + G I +P++
Sbjct: 16 ISYEQLFTRALKVLGALQK-LGIKPGDEVVFQIEDNEDFIYVFWACILGGIIPVPLSYG- 73
Query: 128 SVSEIKKQVTLCKTKISLAFTIYENVDKL-RSWGTTPVVAVPENLVNDFKEGRFSDFHKL 186
E+ KL R W L N F L
Sbjct: 74 --------------------NTDEHKLKLLRVW---------NILNNPF----------L 94
Query: 187 IAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLS 246
I + L+ P D A I +SSG+TG KG LTH N + +E + EA++ ++
Sbjct: 95 ITDRDSLLSLP----DDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAII--EAAE---IT 145
Query: 247 SEAVFLAVLPMFHIYGLSLFALGLLSLG------PSVVVMRRFEASEMLKVIDKYGVT-- 298
SE VFL+ +P+ H GL F L +LG P+ + +RR L ++ T
Sbjct: 146 SEDVFLSWMPLTHDMGLIGFHLTPTALGINQYLMPTRLFIRR--PLLWLDKASQHRATIL 203
Query: 299 ------------HFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGA 346
HF I L+ S++ + +GA P ++ + E+F+
Sbjct: 204 SSPNFGYKYLLKHFKTEKIIDWDLS------------SVRLIFNGAEPISADLCEEFLEK 251
Query: 347 -----FPHVDFIQGYGMTEST-AVGTRGFNTKKFS-----KYFSVGLLAPNIQAK----- 390
YG+ E+T AV + + VG+ I K
Sbjct: 252 MAPFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIEIDPKNSDAI 311
Query: 391 -VVDW---VNGCF----------LPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWL 436
V+ ++GC LP + G + ++G Y NN +AT +I +GWL
Sbjct: 312 SFVEVGSPIDGCEIRIVDDAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWL 371
Query: 437 HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEIL--DVAVTGAMDKV 494
TGD+ F +G L I R K++I NG P D+E V I VA G D+
Sbjct: 372 KTGDLG-FLRNGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEK 430
Query: 495 LG-EIPVAFVVRR---DGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRR 550
E V FV R D T + ++ +++ + V+ +SIPK+ +GK+ R
Sbjct: 431 EQSEEVVIFVEYRQSLDDFTPLALKIKRHVNKKMG--LNIDHVIPVRSIPKTTSGKIQRY 488
Query: 551 ELRKF 555
+L +
Sbjct: 489 KLAQQ 493
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 3e-30
Identities = 112/387 (28%), Positives = 175/387 (45%), Gaps = 38/387 (9%)
Query: 186 LIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFI-AAVELFVRFEASQYEY 244
L+A L + D ++++SGTTGA K +HG A L RF
Sbjct: 134 LVAAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFG------ 187
Query: 245 LSSEAVFLAVLPMFHIYG-LSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVV 303
L+ + V +P+FH ++ +A + S G +V + +F AS L + +YG T+F V
Sbjct: 188 LTRDDVCYVSMPLFHSNAVMAGWAPAVAS-GAAVALPAKFSASGFLDDVRRYGATYFNYV 246
Query: 304 -PPI--LMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTE 360
P+ ++A + N L +V+ G A+ + I +F F GYG +E
Sbjct: 247 GKPLAYILATPERPDD-ADNPL----RVAFGNE-ASPRDIAEFSRRF-GCQVEDGYGSSE 299
Query: 361 STAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGC----FLPPG-------STGELW 409
+ R T S +G AP + + + C F G + GEL
Sbjct: 300 GAVIVVREPGTPPGS----IGRGAPGVAIYNPETLTECAVARFDAHGALLNADEAIGELV 355
Query: 410 -LRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQIS 468
G G + Y NN +AT + + G +GD+AY D DG++Y R + ++ +G +S
Sbjct: 356 NTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLS 414
Query: 469 PADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL-AQRVAPY 527
A +E +L+ HP I VAV D+ +G+ +A +V RDG+T A +L AQ
Sbjct: 415 AAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLGT 474
Query: 528 KKVRRVV-FTKSIPKSAAGKVLRRELR 553
K R V +P +A KVL+REL
Sbjct: 475 KAWPRYVRIAADLPSTATNKVLKRELI 501
|
Length = 540 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 120 bits (301), Expect = 5e-29
Identities = 124/480 (25%), Positives = 201/480 (41%), Gaps = 27/480 (5%)
Query: 88 FGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAF 147
G+ GD V L N + A+ +GA++ NP LS EI L + +
Sbjct: 44 LGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIA--YILNHAEDKVLL 101
Query: 148 TIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAI 207
+ L + V +V D K ++ G+ V ++ +
Sbjct: 102 FDPNLL-PLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADP-VRV-PERAACGM 158
Query: 208 LYSSGTTGASKGAELTH-GNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLF 266
Y++GTTG KG +H + ++ + + S + V L V+PMFH+
Sbjct: 159 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTAL----SEKDVVLPVVPMFHVNAWC-L 213
Query: 267 ALGLLSLGPSVVVMRRFEASEML-KVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSL 325
+G V+ L ++ D GVT VP + +AL +
Sbjct: 214 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLR 273
Query: 326 KQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGF---NTKKFSKYFSVGL 382
+ V G+A S I + QGYG+TE++ V + F + + S+ + L
Sbjct: 274 RLVVGGSAAPRSLIARFERMGV---EVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTL 330
Query: 383 LAP---NIQAKVVDWVNGCFLPPGSTGE----LWLRGPGTMKEYINNADATMSTIDKEGW 435
A I + + P G+ + L+GP Y N +AT S + +G+
Sbjct: 331 KAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGF 390
Query: 436 LHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVL 495
TGDIA +DE+GY+ I DRLK++IK G IS DLE L+ HP++ + AV
Sbjct: 391 FRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKW 450
Query: 496 GEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKV-RRVVFTKSIPKSAAGKVLRRELRK 554
E P+A VV R T + ++L + ++ VF + IP+++AGK L+R LR+
Sbjct: 451 QERPLAVVVPRGEKP-TPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALRE 509
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-28
Identities = 91/436 (20%), Positives = 158/436 (36%), Gaps = 47/436 (10%)
Query: 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
ALV G ++Y +L +A L G+ G+ V +L S+ V LA+L
Sbjct: 243 AVALVRG--GQQLTYAELDARANRLARLLISL-GVGPGETVAILADRSLELVVALLAVLK 299
Query: 116 LGAIVIPMNPLL-------SVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVP 168
GA +P++PL + + + + L + + + + + P
Sbjct: 300 AGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPGLALDDALSEIPDTDPI 359
Query: 169 ENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFI 228
+ A I+Y+SG+TG KG + H
Sbjct: 360 PQALLG---------------------------DALAYIIYTSGSTGQPKGVRIEHRALA 392
Query: 229 AAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFE--AS 286
+ +A L ++ LA+ + + LL V+ + +
Sbjct: 393 NLLN-----DAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPA 447
Query: 287 EMLKVIDKYGVTHFPVVPPILMALTKAAK-GLCGNSLKSLKQV-SSGAAPANSKIIEDFV 344
+L++++ G+T +VP +L L AA + + L+Q+ S G A + +
Sbjct: 448 ALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQ 507
Query: 345 GAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGS 404
A + YG TE+T + + +G N Q ++D LP G
Sbjct: 508 LAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLGV 566
Query: 405 TGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNG 464
GEL++ G G Y+N D T TGD+A DG L + R +K G
Sbjct: 567 PGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRG 626
Query: 465 YQISPADLETVLICHP 480
++I ++E L P
Sbjct: 627 FRIELGEIEAALAEQP 642
|
Length = 642 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 5e-28
Identities = 92/376 (24%), Positives = 154/376 (40%), Gaps = 42/376 (11%)
Query: 203 DTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYG 262
D A +Y+SGTTG K A ++H ++ A +F L + V LP++H
Sbjct: 82 DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGL-----LKPDDVLYLCLPLYHSNA 136
Query: 263 LSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMAL--TKAAKGLCGN 320
L++ L+ G S+ + R+F AS+ + +YG T F V + L +
Sbjct: 137 LTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPEKPDDRDH 196
Query: 321 SLKSLKQVSSGAAPANSKIIEDFVGAF--PHVDFIQGYGMTESTAVGTRGFNTKKFSKYF 378
L+ K + +G P I ++F F P + ++ YG TE FN
Sbjct: 197 PLR--KIIGNGLRP---DIWDEFKERFGVPRI--VEFYGSTEGNVGFINLFNKPG----- 244
Query: 379 SVGLLAPNIQAKVVDW----------VNGCFL--PPGSTGELWLRG--PGTMKEYINNAD 424
+VG L P VV + NG + PPG G L Y ++
Sbjct: 245 AVGRL-PPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEA 303
Query: 425 AT---MSTIDKEG--WLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICH 479
+ + K+G + +TGD+ D GY Y VDRL + ++ G +S ++E VL H
Sbjct: 304 TEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKH 363
Query: 480 PEILDVAVTGAMD-KVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKS 538
P + + V G G +A + G+ A +L +++ Y + + +
Sbjct: 364 PGVEEANVYGVEVPGTEGRAGMAALTLAPGAAFDPQAFAAHLDEQLPAYARPLFLRVQAA 423
Query: 539 IPKSAAGKVLRRELRK 554
+ + K + +LRK
Sbjct: 424 METTGTFKYQKTDLRK 439
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-26
Identities = 90/366 (24%), Positives = 151/366 (41%), Gaps = 36/366 (9%)
Query: 202 QDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQY--EYLSSEAVFLAVLPMFH 259
D A ++Y+SG+TG KG + H N A +++ A+ + E L+ LA +
Sbjct: 105 DDLAYVIYTSGSTGRPKGVAIEHRNAAA----LLQWAAAVFSAEELAG---VLAATSI-- 155
Query: 260 IYGLSLFAL-GLLSLGPSVVVMRRFEASEMLKVID---KYGVTHFPVVPPILMALTKAAK 315
+ LS+F + LS G VV+ A L + D K VT VP L +
Sbjct: 156 CFDLSVFEIFVPLSTGGRVVL-----ADNALALPDLPAKAEVTLINTVPSAARELLRH-- 208
Query: 316 GLCGNSL-KSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKF 374
++L S++ V+ P ++++ YG +E T T
Sbjct: 209 ----DALPSSVRTVNLAGEPLPQELVQRLYALPQVERVYNLYGPSEDTTYSTYAEVEPGA 264
Query: 375 SKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT-------- 426
S+ S+G QA V+D + +P G GEL++ G G + Y+ + T
Sbjct: 265 SRTPSIGRPLAGTQAYVLD-AHLQPVPVGVPGELYIGGAGVARGYLGRPELTAERFLPNP 323
Query: 427 MSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVA 486
+ E TGD+ DG L + R+ + +K G++I ++E L P + +
Sbjct: 324 FAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEIEAALRSIPGVAEAV 383
Query: 487 VTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGK 546
V D VA++V G+ + + LA R+ Y R V ++P + GK
Sbjct: 384 VVAIGDAAGDRQLVAYIVADPGAAIDIEDLRARLATRLPAYMVPSRFVRLDALPLTPNGK 443
Query: 547 VLRREL 552
+ R+ L
Sbjct: 444 IDRKAL 449
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 8e-26
Identities = 105/428 (24%), Positives = 177/428 (41%), Gaps = 89/428 (20%)
Query: 194 VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLA 253
++ + D A + +SG+TG+ K ++THGN A E F A++++ + V ++
Sbjct: 144 IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAE--AMFVAAEFDVETD--VMVS 199
Query: 254 VLPMFHIYGLSLFALGLLSL----GPSVVVMR--RFEASEML--KVIDKYG--VTHFPVV 303
LP+FH G+ +G L++ G +V + F +L ++I KY +T P
Sbjct: 200 WLPLFHDMGM----VGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNF 255
Query: 304 PPILMA--LTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGA-----FPHVDFIQGY 356
L+A L + AK + L SL+ +GA P + +ED + A + Y
Sbjct: 256 AYALLARRLRRQAKPGAFD-LSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAY 314
Query: 357 GMTEST---------------------------AVGTRGFNTKKFSKYFSVGLLAPNIQA 389
GM E+T AV NT++ + ++G P ++
Sbjct: 315 GMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLA---TLGPPLPGLEV 371
Query: 390 KVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGY 449
+VVD +G LPP G + LRG Y+ D + D +GWL TGD+ Y E+G
Sbjct: 372 RVVD-EDGQVLPPRGVGVIELRGESVTPGYLT-MDGFIPAQDADGWLDTGDLGYLTEEGE 429
Query: 450 LYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS 509
+ + R+K+VI G I P D+E ++ V VA + S
Sbjct: 430 VVVCGRVKDVIIMAGRNIYPTDIER------------AAARVEGVRPGNAVAVRLDAGHS 477
Query: 510 TLTEAAVID-YLAQRVAPYKKVRR------------------VVFTKSIPKSAAGKVLRR 550
A ++ + A +++R V+ SIPK+ +GK+ R
Sbjct: 478 REGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRA 537
Query: 551 ELRKFLTS 558
+ +T
Sbjct: 538 NAAELVTP 545
|
Length = 545 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 8e-25
Identities = 125/486 (25%), Positives = 195/486 (40%), Gaps = 70/486 (14%)
Query: 89 GISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFT 148
G+S GD VLL LP+S + LA L G + NP L + T+ +L T
Sbjct: 51 GLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAAR--NTEPALVVT 108
Query: 149 IYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAI- 207
D+ + VA L+++ + + + G D A
Sbjct: 109 SDALRDRFQP----SRVAEAAELMSEAARVAPGGY-EPMGG-------------DALAYA 150
Query: 208 LYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFA 267
Y+SGTTG K A H + + V+ R + L+ E L M+ YGL
Sbjct: 151 TYTSGTTGPPKAAIHRHADPLTFVDAMCR----KALRLTPEDTGLCSARMYFAYGLGNSV 206
Query: 268 LGLLSLGPSVVV-------------MRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAA 314
L+ G S V+ RF S + YGV +F +
Sbjct: 207 WFPLATGGSAVINSAPVTPEAAAILSARFGPSVL------YGVPNF---------FARVI 251
Query: 315 KGLCGNSLKSLK-QVSSGAA--PANSKIIEDFVGAFPHVDFIQGYGMTESTAVG-TRGFN 370
+S +SL+ VS+G A ++ + +F G P +D G G TE VG T N
Sbjct: 252 DSCSPDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILD---GIGSTE---VGQTFVSN 305
Query: 371 TKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI 430
+ ++G + P + +VV +G PG G+LW+RGP K Y N D S +
Sbjct: 306 RVDEWRLGTLGRVLPPYEIRVVA-PDGTTAGPGVEGDLWVRGPAIAKGYWNRPD---SPV 361
Query: 431 DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGA 490
EGWL T D D DG++ R + G + P ++E ++I + + AV
Sbjct: 362 ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAV 421
Query: 491 MDKVLGEIPVAFVVRRDGSTLTEAAVIDY---LAQRVAPYKKVRRVVFTKSIPKSAAGKV 547
+ AF+V G+T+ + + D L R++ +K R +P++ GK+
Sbjct: 422 RESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKL 481
Query: 548 LRRELR 553
+R LR
Sbjct: 482 VRGALR 487
|
Length = 705 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-24
Identities = 82/283 (28%), Positives = 125/283 (44%), Gaps = 13/283 (4%)
Query: 201 QQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHI 260
+D A IL++SGT KG LTH N +A ++F + + + V ++ LP FH
Sbjct: 182 PEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPK-----EDDVMMSFLPPFHA 236
Query: 261 YGLSLFAL-GLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCG 319
YG + L LLS P V +++++ID+ VT P + K AK
Sbjct: 237 YGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKK-QE 295
Query: 320 NSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFS 379
+ L SL+ V G + ++ + FPH+ QGYG TE + V T NT K+ S
Sbjct: 296 SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVIT--INTVNSPKHES 353
Query: 380 -VGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI--DKEGWL 436
VG+ + +V + G TG + RG Y+ D + E W
Sbjct: 354 CVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGE-DFGQGFVELGGETWY 412
Query: 437 HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICH 479
TGD+ Y D G L++ RL +K +S LE++L+
Sbjct: 413 VTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEG 455
|
Length = 539 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 7e-24
Identities = 132/557 (23%), Positives = 209/557 (37%), Gaps = 82/557 (14%)
Query: 53 HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLA 112
++ R L ++L Y L ++ A L G+ GD V L+ F F A
Sbjct: 40 YDRRGQLEEALP-----YQTLRARAEAGARRLLAL-GLKPGDRVALIAETDGDFVEAFFA 93
Query: 113 LLYLGAIVIPMNPLLS--------VSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPV 164
Y G + +P+ PL +++++ + + + D+L W
Sbjct: 94 CQYAGLVPVPL-PLPMGFGGRESYIAQLRGMLASAQPAAIIT------PDELLPWVNEAT 146
Query: 165 VAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTH 224
P V + F L L P D A + YSSG+T +G +TH
Sbjct: 147 HGNPLLHV-----LSHAWFKALPEADVAL---PRPTPDDIAYLQYSSGSTRFPRGVIITH 198
Query: 225 GNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVM--RR 282
+A + V + LP +H GL F L ++ SV + R
Sbjct: 199 RALMANLRAISHDGLKVRP--GDRCV--SWLPFYHDMGLVGFLLTPVATQLSVDYLPTRD 254
Query: 283 FEASEM--LKVIDKYGVTHFPVVPPI---LMALTKAAKGLCGNSLKSLKQVSSGAAPANS 337
F + L +I + T PP L A +K L L + GA
Sbjct: 255 FARRPLQWLDLISRNRGT-ISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRP 313
Query: 338 KIIEDFVGAFPHVDF-----IQGYGMTEST-AV-------GTR----------------- 367
++ F AF F + YG+ E+T AV G
Sbjct: 314 DVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVA 373
Query: 368 -GFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT 426
G T++ + + G P + ++ + G LP G + +RGP M Y + + +
Sbjct: 374 PGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMSGYFRD-EES 431
Query: 427 MSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEIL--D 484
+ +GWL TGD+ Y DGYLYI R K++I NG I P D+E + PE+ D
Sbjct: 432 QDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGD 490
Query: 485 VAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVF---TKSIPK 541
A ++ + GE V V R +I LA V V V S+P+
Sbjct: 491 AAAF-SIAQENGEKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEAAVELVPPHSLPR 549
Query: 542 SAAGKVLRRELRK-FLT 557
+++GK+ R + +K +L+
Sbjct: 550 TSSGKLSRAKAKKRYLS 566
|
Length = 579 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 91/370 (24%), Positives = 144/370 (38%), Gaps = 39/370 (10%)
Query: 200 RQQDTAAILYSSGTTGASKGAELTHG---NFIAAVELFVRFEASQYEYLSSEAVFLAVL- 255
D A ++Y+SG+TG KG E++H NF+ ++ L + LAV
Sbjct: 91 DPDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMA-----RRPG---LGASDRLLAVTT 142
Query: 256 PMFHIYGLSLFALGLLSLGPSVVVMRRFEASE---MLKVIDKYGVTHFPVVPPIL-MALT 311
F I L L L G +VV+ + + ++I +T P M L
Sbjct: 143 ISFDISVLELL--LPLLSGATVVIASAETVRDPERLARLIADERITIMQATPATWRMLLA 200
Query: 312 KAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAF--PHVDFIQGYGMTESTAVGTRGF 369
+G +SL + G A + D + YG TE+T T
Sbjct: 201 AGWRGR-----ESLTALCGGEA-----LPRDLAERLLSTGAELWNMYGPTETTIWSTCAR 250
Query: 370 NTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMST 429
T ++G N Q V+D + +PPG GEL++ G G + Y+ + T
Sbjct: 251 VTAADGP-VTIGRPIANTQVYVLD-EDLQPVPPGVPGELYIGGDGVARGYLGRPELTAER 308
Query: 430 I-----DKEG--WLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEI 482
D G TGD+ + DG L + R + +K G++I ++E L HP +
Sbjct: 309 FVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAALRAHPGV 368
Query: 483 LDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKS 542
D V + + VA+VV + G+ A+ L + Y V +P +
Sbjct: 369 ADAVVVVREEGPGDQRLVAYVVPKAGAAPDAEALRAALRATLPAYMVPAAFVQLDELPLT 428
Query: 543 AAGKVLRREL 552
GKV R+ L
Sbjct: 429 PNGKVDRKAL 438
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 7e-23
Identities = 130/533 (24%), Positives = 212/533 (39%), Gaps = 65/533 (12%)
Query: 68 ISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLL 127
+SY L +++A+ L+ GD +LL P+ + F LY G I +P P
Sbjct: 41 LSYRDLDLRARTIAAALQARASF--GDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYPPE 98
Query: 128 SVSEIKKQVTLC---KTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFH 184
S ++ L + L T+ + D L PE L D
Sbjct: 99 SARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEELAAANAPELLCVD---------- 148
Query: 185 KLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVR--FEASQY 242
L + + P ++ D A + Y+SG+T KG +++HGN +A E +R F
Sbjct: 149 TLDPALAEAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVAN-EQLIRHGFGID-- 205
Query: 243 EYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVM--RRFEASEM--LKVIDKYG-- 296
L+ + V ++ LP++H GL L + G V+M F + L+ I +YG
Sbjct: 206 --LNPDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPAYFLERPLRWLEAISEYGGT 263
Query: 297 VTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVG-----AFPHVD 351
++ P L + + L L + SG+ P +E F F
Sbjct: 264 ISGGPDFAYRLCSERVSESALERLDLSRWRVAYSGSEPIRQDSLERFAEKFAACGFDPDS 323
Query: 352 FIQGYGMTEST---AVGTRG-------FNTKKFSK----------YFSVGLLAPNIQAKV 391
F YG+ E+T + G RG + + ++ S G P +
Sbjct: 324 FFASYGLAEATLFVSGGRRGQGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLI 383
Query: 392 VDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI---DKEGWLHTGDIAYFDEDG 448
VD + L GE+W GP Y N +A+ T D WL TGD+ F DG
Sbjct: 384 VDPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLG-FLRDG 442
Query: 449 YLYIVDRLKEVIKYNGYQISPADLETVLICHPEIL---DVAVTGAMDKVLGEIPVAF-VV 504
L++ RLK+++ G+ + P D+E + E++ VA + I +A +
Sbjct: 443 ELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAFAVNHQGEEGIGIAAEIS 502
Query: 505 RRDGSTLTEAAVIDYLAQRVA-PYKKVRRVVF---TKSIPKSAAGKVLRRELR 553
R L A+I + Q VA ++ VV ++PK+++GK+ R R
Sbjct: 503 RSVQKILPPQALIKSIRQAVAEACQEAPSVVLLLNPGALPKTSSGKLQRSACR 555
|
Length = 4334 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-22
Identities = 139/546 (25%), Positives = 213/546 (39%), Gaps = 93/546 (17%)
Query: 43 DVDSFIF------SHKHNGRTALVDSLSGYSISYPQLFPLVQSVASG--LRHHFGISQGD 94
D D +F + H + V+ ++Y +L L + G L+ G+
Sbjct: 628 DYDRTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKL--LTGAFVLGRKLKK--NTPPGE 683
Query: 95 AVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKT-KISLAFTIYENV 153
V ++LPN+ V F AL G + +N ++ I CK ++ T +
Sbjct: 684 NVGVMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSA---CKAAQVKTVLTSRAFI 740
Query: 154 DKLRSWGTTPVVAVPENLVN-----DFKEGRFSDFHK---LIAGKFDLVERPVIRQQDTA 205
+K R P++ E + D + K L+AG+F LV D A
Sbjct: 741 EKAR---LGPLIEALEFGIRIIYLEDVRAQ-IGLADKIKGLLAGRFPLVYFCNRDPDDPA 796
Query: 206 AILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGL-S 264
IL++SG+ G KG L+H N +A R + + S E LP+FH +GL
Sbjct: 797 VILFTSGSEGTPKGVVLSHRNLLAN-----RAQVAARIDFSPEDKVFNALPVFHSFGLTG 851
Query: 265 LFALGLLS-----LGPSVVVMRRFEASEMLKVIDKYGVTHFPVVP--------PILMA-- 309
L LLS L PS + H+ ++P IL
Sbjct: 852 GLVLPLLSGVKVFLYPSPL--------------------HYRIIPELIYDTNATILFGTD 891
Query: 310 --LTKAAKGLCGNSLKSLKQVSSGAAP---ANSKIIEDFVGAFPHVDFIQGYGMTESTAV 364
L A+ +SL+ V +GA + + G + ++GYG+TE+ V
Sbjct: 892 TFLNGYARYAHPYDFRSLRYVFAGAEKVKEETRQTWMEKFG----IRILEGYGVTETAPV 947
Query: 365 GTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNAD 424
NT +K +VG L P I+ ++ V G + G G L++RGP M Y+ +
Sbjct: 948 --IALNTPMHNKAGTVGRLLPGIEYRLEP-VPG--IDEG--GRLFVRGPNVMLGYLRAEN 1000
Query: 425 ATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICH--PEI 482
+ +GW TGDI DE+G++ I R K K G IS A +E L P+
Sbjct: 1001 PGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEE-LAAELWPDA 1059
Query: 483 LDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFT-KSIPK 541
L AV+ D GE + S T AA + + A V + T IP
Sbjct: 1060 LHAAVS-IPDARKGERIILLT---TASDATRAAFLAHAKAAGASELMVPAEIITIDEIPL 1115
Query: 542 SAAGKV 547
GK+
Sbjct: 1116 LGTGKI 1121
|
Length = 1140 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-22
Identities = 104/355 (29%), Positives = 149/355 (41%), Gaps = 88/355 (24%)
Query: 183 FHKLIA-GKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQ 241
+ KL+A G+ + +D A I Y+SGTTG KG LTHGN IA V +S
Sbjct: 201 YSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVA-----GSSL 255
Query: 242 YEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGV---T 298
V ++ LP+ HIY + + +L G +V F + LK++D T
Sbjct: 256 STKFYPSDVHISYLPLAHIYE-RVNQIVMLHYGVAV----GFYQGDNLKLMDDLAALRPT 310
Query: 299 HFPVVP----PILMALTKAAKG--------------------------------LCGNSL 322
F VP I +T A K L N +
Sbjct: 311 IFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKI 370
Query: 323 KS-----LKQVSSGAAPANSKIIEDFVGAFPHVDF----IQGYGMTESTAV--GTR-GFN 370
K+ ++ +SSGA+P + ++E F + F ++GYGMTE++ V G G N
Sbjct: 371 KAKLGGRVRFMSSGASPLSPDVME-----FLRICFGGRVLEGYGMTETSCVISGMDEGDN 425
Query: 371 TKKFSKYFSVGLLAPNIQAKVVDWVNGCFLP---------PGSTGELWLRGPGTMKEYIN 421
VG P + K+VD +P P GE+ +RGP K Y
Sbjct: 426 L-----SGHVGSPNPACEVKLVD------VPEMNYTSEDQPYPRGEICVRGPIIFKGYYK 474
Query: 422 NADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKY-NGYQISPADLETV 475
+ T ID++GWLHTGDI + G L I+DR K + K G I+P +E V
Sbjct: 475 DEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENV 529
|
Length = 651 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 4e-22
Identities = 98/362 (27%), Positives = 152/362 (41%), Gaps = 45/362 (12%)
Query: 203 DTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYG 262
D A ++ +SGTTG KGA LT A+ + + ++ L +L LP HI G
Sbjct: 36 DVALVVATSGTTGTPKGAMLTAAALTASAD-------ATHDRLGGPGQWLLALPAHHIAG 88
Query: 263 LSLFALGLLSLGPSVV--VMRRFEASEMLKVIDKYGV--THFPVVPPILMALTKAAKGLC 318
L + +++ V V F+ + + + + + G + +VP M L KA
Sbjct: 89 LQVLVRSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLVP---MQLAKALDDPA 145
Query: 319 G-NSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKY 377
+L L V G PA + +++ A ++ ++ YGM+E T+ G Y
Sbjct: 146 ATAALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGMSE-TSGGC---------VY 193
Query: 378 FSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLH 437
V L ++ +V D G + L GP K Y N D + GW
Sbjct: 194 DGVPL--DGVRVRVED------------GRIALGGPTLAKGYRNPVDP--DPFAEPGWFR 237
Query: 438 TGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGE 497
T D+ D DG L ++ R + I G + P +E L HP + D AV G D LG+
Sbjct: 238 TDDLGALD-DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQ 296
Query: 498 IPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRREL-RKFL 556
VA VV G T A+ ++A+ + R + +P+ GKV RR L R+F
Sbjct: 297 RVVAAVVGDGGPAPTLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFA 356
Query: 557 TS 558
Sbjct: 357 GE 358
|
Length = 358 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 5e-22
Identities = 115/491 (23%), Positives = 192/491 (39%), Gaps = 87/491 (17%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVL-LLLPNSIYFPVIFLALLYLGAIVIPMNP 125
S+SY QL+ V +A LR + G + L L NSI + + LA L G + IP+
Sbjct: 2 SLSYQQLWQEVDLLAEQLR-----ALGVKRIALALDNSIDWVIADLACLQAGIVCIPIPH 56
Query: 126 LLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHK 185
S + + + D L P A + G
Sbjct: 57 FFSAQQTQHLLNDA------------GADLL--ISDDPDAASALHTPFAT-LGEDLYIAL 101
Query: 186 LIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAV--ELFVRFEASQYE 243
+ PV TA I Y+SG+TG KG L+ + V L + E
Sbjct: 102 RPS------ANPVELPAGTAKITYTSGSTGQPKGVCLSAAA-LETVAQSLAEAIAILEPE 154
Query: 244 YLSSEAVFLAVLPMF----HIYGLSLFALGLLSLGPSVVVM----------RRFEASEML 289
L +LP+ +I G+ L +G +V+++ + ++ +
Sbjct: 155 ------RHLCLLPLATLLENIAGVYA----PLLMGATVILVPLAELGLSGSSGLDPAQFV 204
Query: 290 KVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIE--DFVGAF 347
+ ++ +VP +LMAL A + +SL+ V+ G A + +++ +G
Sbjct: 205 AALSRWQPHSLILVPQLLMALVAAVEQGP-LPPESLRFVAVGGARVSPSLLQRARALG-- 261
Query: 348 PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGE 407
+ +GYG++E +V + NT + SVG P++Q + + GE
Sbjct: 262 --LPVYEGYGLSECASVVS--LNTPGADRPGSVGKPLPHVQVSIAN-----------DGE 306
Query: 408 LWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEV-IKYNGYQ 466
+ +RG M Y+ AT + W TGD+ + DE+GYLYI R K + I G
Sbjct: 307 ILVRGS-LMLGYLGEPPAT------DDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRN 359
Query: 467 ISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVV-RRDGSTLTEAAVIDYLAQRVA 525
+SP +E+ L P I V G L VA +V + S A + + ++
Sbjct: 360 VSPEWVESELQQAPAIAQAVVFGDAQPFL----VALIVPAPNISDDQLEAAVQQINAQLP 415
Query: 526 PYKKVRRVVFT 536
Y +++ V
Sbjct: 416 DYARIKTWVRL 426
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (245), Expect = 2e-21
Identities = 117/435 (26%), Positives = 181/435 (41%), Gaps = 99/435 (22%)
Query: 174 DFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVEL 233
D+ EGR +H+L+AG D E + +D ILY+SG+TG KG T G ++
Sbjct: 217 DWVEGRDLWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLV---- 272
Query: 234 FVRFEASQYEYLSSEAVFLAVLPMFH---IY----------GLSLFALGLLSLGPSVVVM 280
Y ++ + VF + +Y G S G L+ G + ++
Sbjct: 273 --------YAAMTMKYVF-----DYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLM- 318
Query: 281 RRFE-------ASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLC-GNSLKSLKQVSSGA 332
FE +VIDK+ VT F P + AL K L SL+ + S
Sbjct: 319 --FEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVG 376
Query: 333 APANS-------KIIEDFVGAFPHVDFIQGYGMTEST----------AVGTR-GFNTKKF 374
P N K++ P VD + TE T A + G T+
Sbjct: 377 EPINPEAWEWYYKVVGG--ERCPIVD---TWWQTE-TGGIMITPLPGATPLKPGSATRPL 430
Query: 375 SKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGEL-----WLRGPGTM-------KEYINN 422
P IQ VVD G L G G L W PG M + ++
Sbjct: 431 ----------PGIQPAVVD-EEGNPLEGGEGGNLVIKDPW---PGMMRTIYGDHERFV-- 474
Query: 423 ADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEI 482
ST G TGD A DEDGY +I R+ +V+ +G+++ A++E+ L+ HP++
Sbjct: 475 -KTYFSTFK--GMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKV 531
Query: 483 LDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEA---AVIDYLAQRVAPYKKVRRVVFTKSI 539
+ AV G D + G+ AFV + G ++ + +++ + + P K + F +
Sbjct: 532 AEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGL 591
Query: 540 PKSAAGKVLRRELRK 554
PK+ +GK++RR LRK
Sbjct: 592 PKTRSGKIMRRILRK 606
|
Length = 637 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 95.5 bits (237), Expect = 1e-20
Identities = 90/346 (26%), Positives = 148/346 (42%), Gaps = 60/346 (17%)
Query: 180 FSDFHKLIAGK-FDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFE 238
+ +F KL GK +DL P+ ++ D I+Y+SGTTG KG +++ + + + +R
Sbjct: 203 WDEFLKLGEGKQYDL---PIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLL 259
Query: 239 ASQYEYLSSEAVFLAVLPMFHIYG--------------------LSLFALGLLSLGPSVV 278
S L+ + V+L+ LP+ HI+ + L L L P++
Sbjct: 260 KSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIF 319
Query: 279 -----VMRRFEASEMLKVID--------------------KYGVTHFPVVPPI-LMALTK 312
V+ R + K+ D K G +H P + K
Sbjct: 320 CAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNK 379
Query: 313 AAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTK 372
+GL GN ++ + SGAAP S + E F+ +QGYG+TES A GT
Sbjct: 380 VKQGLGGN----VRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCA-GTFVSLPD 433
Query: 373 KFSKYFSVGLLAPNIQAKV--VDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI 430
+ +VG PN+ ++ V + L GE+ +RG Y D T +
Sbjct: 434 ELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVL 493
Query: 431 DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKY-NGYQISPADLETV 475
+GWLHTGD+ + +G + I+DR K + K G ++ ++E +
Sbjct: 494 -IDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENI 538
|
Length = 666 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 3e-20
Identities = 127/540 (23%), Positives = 235/540 (43%), Gaps = 63/540 (11%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPL 126
S++Y +L V +A+ L+ G+ +GDAV++ LP + P+ LA +GA+ +
Sbjct: 120 SLTYSELLDRVCQLANYLKD-VGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAG 178
Query: 127 LSVSEIKKQVTLCKTKISL----------AFTIYENVDKLRSWGTTPVVAVPENLVND-- 174
S + +++ CK K+ + + + VD V+V L +
Sbjct: 179 FSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQ 238
Query: 175 ---------FKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHG 225
++EGR + ++ E + +D +LY+SG+TG KG T G
Sbjct: 239 LAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTG 298
Query: 226 NFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFE- 284
++ ++ ++Y ++ V+ I G S G + G +V+V FE
Sbjct: 299 GYMVYTATTFKY---AFDYKPTD-VYWCTADCGWITGHSYVTYGPMLNGATVLV---FEG 351
Query: 285 ------ASEMLKVIDKYGVTHFPVVPPILMALTK-AAKGLCGNSLKSLKQVSSGAAPANS 337
+ ++DKY VT F P ++ +L + + + +S KSL+ + S P N
Sbjct: 352 APNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINP 411
Query: 338 ---KIIEDFVG--AFPHVDFIQGYGMTESTAVGTRGFNTKKF-----SKYFSVGLLAPNI 387
+ + VG P D + TE T GF K S +
Sbjct: 412 SAWRWFFNVVGDSRCPISD---TWWQTE-----TGGFMITPLPGAWPQKPGSATFPFFGV 463
Query: 388 QAKVVDWVNGCFLPPGSTGELWLRG--PGTMKEYINNADATMSTIDK--EGWLHTGDIAY 443
Q +VD G + +G L ++ PG + + + +T K G+ +GD
Sbjct: 464 QPVIVD-EKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCS 522
Query: 444 FDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFV 503
D+DGY ++ R+ +VI +G++I A++E+ L+ HP+ + AV G +V G+ AFV
Sbjct: 523 RDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFV 582
Query: 504 VRRDGSTLTE---AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560
+G +E ++I + ++ + ++ + +PK+ +GK++RR LRK + +L
Sbjct: 583 TLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 642
|
Length = 666 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 4e-20
Identities = 131/541 (24%), Positives = 213/541 (39%), Gaps = 78/541 (14%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI------- 119
+++Y QL V AS LR G+ +GD VL+ +P LA +GAI
Sbjct: 83 TLTYRQLHREVNVFASALRA-LGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGG 141
Query: 120 ---------VIPMNPLLSVS--------EIKKQVTLCKTKISLAFTIYENVDKLRSWGTT 162
+ P L VS ++ L I+ A +V L G
Sbjct: 142 FASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHV-LLVDRGLA 200
Query: 163 PVVAVPENLVNDFKEGRFSDFHKLIAGKFDL-VERPVIRQQDTAAILYSSGTTGASKGAE 221
P+ +P GR D+ L D V + + + ILY+SGTTG KG +
Sbjct: 201 PMRLIP---------GRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQ 251
Query: 222 LTHGNFIAAVELFVRFEASQYEYLSSEA--VFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279
G + AV L S + A V + + + G S L G + V+
Sbjct: 252 RDVGGY--AVAL----ALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVL 305
Query: 280 MR----RFEASEMLKVIDKYGVTHFPVVPPILMALTKA-AKGLCGNSLKSLKQVSSGAAP 334
+ ++++YGV P + L K A L + L SL + P
Sbjct: 306 YEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEP 365
Query: 335 AN---SKIIEDFVGAFPHVDFIQGYGMTES----TAVGTRGFNTKKFSKYFSVGLLAPNI 387
+ + I D +G I Y TE+ A+ G + K K S GL
Sbjct: 366 LDEPTAHWITDGLG----KPVIDNYWQTETGWPVLAI-MPGLDLKP-VKLGSPGLPMYGY 419
Query: 388 QAKVVDWVNGCFLPPGSTGELWLRGP---GTMKEYINNADA----TMSTIDKEGWLHTGD 440
+V+D G P G L + P G + + DA T + K + D
Sbjct: 420 HLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLST-VWGDDARFLKTYWSHFKRPLYSSFD 478
Query: 441 IAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPV 500
DEDGY +I+ R +VI G+++ ++E + HP + +VAV G D++ G++ V
Sbjct: 479 WGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAV 538
Query: 501 AFVVRRDGSTLTEAAV--------IDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
F + ++ + +A +D + +++ + RV F ++PK+ +GK+LRR +
Sbjct: 539 VFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSI 598
Query: 553 R 553
+
Sbjct: 599 Q 599
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 4e-20
Identities = 122/563 (21%), Positives = 207/563 (36%), Gaps = 91/563 (16%)
Query: 34 NLPANDSLLDVDSFIFSH---KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGI 90
N PA + D + +H R ALV +SY +L +A L G+
Sbjct: 503 NAPATEYAPDCVHQLIEAQARQHPERPALV--FGEQVLSYAELNRQANRLAHVLIAA-GV 559
Query: 91 SQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNP------------------LLSVSEI 132
V + + SI V LA+L G +P++P LL+ S +
Sbjct: 560 GPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHL 619
Query: 133 KKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFD 192
Q+ + SL ++ S V P+NL
Sbjct: 620 LAQLPVPAGLRSLCLDEPADLLCGYSGHNPEVALDPDNL--------------------- 658
Query: 193 LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFL 252
A ++Y+SG+TG KG ++HG +V A + + + +++ +
Sbjct: 659 ------------AYVIYTSGSTGQPKGVAISHGALAN----YVCVIAERLQLAADDSMLM 702
Query: 253 AVLPMFHIYGLSLFALGLLSLGPSVVVMRR---FEASEMLKVIDKYGVTHFPVVPPILMA 309
F + LF G L+ G ++ ++ +A ++ GVT +VP L A
Sbjct: 703 VSTFAFDLGVTELF--GALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQA 760
Query: 310 LTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGF 369
L +A+ + + + G ++ P I YG TE T VG +
Sbjct: 761 LLQAS---RVALPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTE-TTVGVSTY 816
Query: 370 NTKKFSKYFS---VGLLAPNIQAKVVDWVNGCF--LPPGSTGELWLRGPGTMKEYINNAD 424
+ F +G N+ ++D +P G GEL++ G G + Y
Sbjct: 817 ELSDEERDFGNVPIGQPLANLGLYILD---HYLNPVPVGVVGELYIGGAGLARGYHRRPA 873
Query: 425 ATM-------STIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLI 477
T D TGD+A + DG + + R+ +K G++I ++E L+
Sbjct: 874 LTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLL 933
Query: 478 CHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTE-AAVIDYLA---QRVAP-YKKVRR 532
P + + AV A G VA++V + E A D L ++V P Y
Sbjct: 934 AQPGVRE-AVVLAQPGDAGLQLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDYMVPAH 992
Query: 533 VVFTKSIPKSAAGKVLRRELRKF 555
++ S+P + GK+ R+ L K
Sbjct: 993 LLLLDSLPLTPNGKLDRKALPKP 1015
|
Length = 3956 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 7e-20
Identities = 86/379 (22%), Positives = 157/379 (41%), Gaps = 45/379 (11%)
Query: 207 ILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLS-- 264
ILY+SGTTG SK ++G + ++ + + + + + V I +S
Sbjct: 259 ILYTSGTTGNSKAVVRSNGPHLVGLKYY-------WRSIIEKDIPTVVFSHSSIGWVSFH 311
Query: 265 LFALGLLSLGPSVVVMRRFEA---------SEMLKVIDKYGVTHFPVVPPILMALTKA-- 313
F G LSLG + V+ FE ++ I+K+ VTH +P + L K
Sbjct: 312 GFLYGSLSLGNTFVM---FEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDP 368
Query: 314 -AKGLCGN-SLKSLKQVSSGAAPANSKI---IEDFVGAFPHVDFIQGYGMTESTAVGTRG 368
A + L +LK++ G I IE+ + +GYG TE
Sbjct: 369 EATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKS----SRGYGQTEIGITYLYC 424
Query: 369 FNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLR---GPGTMKEYINNADA 425
+ Y + G+ + I+ ++ +G L GE+ + P + N +
Sbjct: 425 YGHINI-PYNATGVPSIFIKPSILS-EDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEK 482
Query: 426 TMSTIDK-EGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILD 484
K G+ ++GD+ + DE+GY IV R + IK +G ++ +ET ++ HP +L+
Sbjct: 483 FKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLE 542
Query: 485 VAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDY-------LAQRVAPYKKVRRVVFTK 537
G D +P+ +V + + + + Q + +R+++
Sbjct: 543 CCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVN 602
Query: 538 SIPKSAAGKVLRRELRKFL 556
+PK+ GK+ R+ + KFL
Sbjct: 603 QLPKTKTGKIPRQIISKFL 621
|
Length = 647 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (233), Expect = 7e-20
Identities = 83/357 (23%), Positives = 137/357 (38%), Gaps = 23/357 (6%)
Query: 205 AAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY-LSSEAVFLAVLPMFHIYGL 263
A ++Y+SG+TG KGA H R Q Y L L P +
Sbjct: 658 AYVIYTSGSTGKPKGAGNRHRALSN------RLCWMQQAYGLGVGDTVLQKTPFSFDVSV 711
Query: 264 SLFALGLLSLGPSVVVMR--RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNS 321
F L+S VV + ++++++I++ GV VP +L A + S
Sbjct: 712 WEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV---AS 768
Query: 322 LKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVG 381
SL+++ + E P YG TE+ T ++ +G
Sbjct: 769 CTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIG 828
Query: 382 LLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMST------IDKEGW 435
N+ ++D N +P G GEL+L G G + Y T + E
Sbjct: 829 RPIANLACYILD-ANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERM 887
Query: 436 LHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVL 495
TGD+A + DG + R+ +K G +I ++E L+ HP + + AV K L
Sbjct: 888 YRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVDGKQL 947
Query: 496 GEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
V +VV A+ +LA + Y + + + +P + GK+ R+ L
Sbjct: 948 ----VGYVVLESEGGDWREALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKAL 1000
|
Length = 5163 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 1e-19
Identities = 111/513 (21%), Positives = 191/513 (37%), Gaps = 77/513 (15%)
Query: 65 GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMN 124
G +++Y ++ VA L H G+ GD V LLL N F I+L L LG +N
Sbjct: 1 GETVTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLN 60
Query: 125 PLLSVSEIKKQVTLCKTKISLAF-----TIYENVDKLRSWGTTPVVAVPENLVNDFKEGR 179
+ + C ++ +A + E + LR+ G EG
Sbjct: 61 TNIRSGSLLHCFRCCGARVLVADPELLEAVEEILPALRAMGVRVFYLSHT----SPPEGV 116
Query: 180 FSDFHKLIAGKFDLVE---RPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVR 236
S K+ A + V R + + TA +Y+SGTTG K A ++H + +
Sbjct: 117 ISLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQCSGMLSL 176
Query: 237 FEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYG 296
+ + V LP++H G L +G + LG ++V+ +F AS+ KY
Sbjct: 177 CGVTA------DDVVYTTLPLYHSSGALLGIVGCIGLGATLVLKPKFSASQFWDDCRKYN 230
Query: 297 VTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGY 356
VT F + +L L + K + +G P + +F+ F + + Y
Sbjct: 231 VTVFQYIGELLRYLCNQPQSDNDRDHKVRLAIGNGLRP---DVWREFLRRFGPIHVWETY 287
Query: 357 GMTEST-----------AVGTRGFNTKKFSKYFSVGLLAPNIQAK--VVDWVNGCFLPPG 403
TE AVG K S + L+ +++ V D C P
Sbjct: 288 ASTEGNIGFINYTGRVGAVGRASCLYKLLSPF---ELIKYDVEKDEPVRDAQGFCI--PV 342
Query: 404 STGELWL--------------RGPGTMKEYINNADATMSTIDKEG--WLHTGDIAYFDED 447
GE L GP + E + + K+G + +TGD+ D
Sbjct: 343 GKGEPGLLISKITSQSPFLGYAGPRELTE-----KKLLRDVFKKGDVYFNTGDLLVQDRQ 397
Query: 448 GYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILD---------VAVTGAMDKVLGEI 498
+LY DR + ++ G ++ ++ +L ++D V V G G
Sbjct: 398 NFLYFHDRTGDTFRWKGENVATTEVADIL----TMVDFIQEVNVYGVTVPGHE----GRA 449
Query: 499 PVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVR 531
+A V+ + G+ + ++ + + Y + R
Sbjct: 450 GMAAVILKPGTEFDLEKLYQHVREFLPAYARPR 482
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 1e-19
Identities = 134/567 (23%), Positives = 218/567 (38%), Gaps = 130/567 (22%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVI------FLALLYLGAI- 119
+ ++ QL V +A+ LR G+ +GD VL IY P+I LA +GAI
Sbjct: 84 TYTFRQLHDEVNRMAAMLRS-LGVQRGDRVL------IYMPMIAEAAFAMLACARIGAIH 136
Query: 120 -----------------------------------VIPMNPLLSVSEIKKQVTLCKTKIS 144
V+P PLL + + L + K
Sbjct: 137 SVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLD-----EAIALAQHK-- 189
Query: 145 LAFTIYENVDKLRSWGTTPVVAVPENLVNDFK-EGRFSDFHKLIAGKFDLVERPV--IRQ 201
V+ V L + GR D+ L A PV +
Sbjct: 190 ----------------PRHVLLVDRGLAPMARVAGRDVDYATLRAQHLG-ARVPVEWLES 232
Query: 202 QDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYL---SSEAVFLAVLPMF 258
+ + ILY+SGTTG KG + G + AV L A+ + + + F +
Sbjct: 233 NEPSYILYTSGTTGKPKGVQRDTGGY--AVAL-----ATSMDTIFGGKAGETFFCASDIG 285
Query: 259 HIYGLSLFALGLLSLGPSVVVMR----RFEASEMLKVIDKYGVTHFPVVPPILMALTKAA 314
+ G S L G + ++ R +A ++++KY V P + L K
Sbjct: 286 WVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQD 345
Query: 315 KGLCGN-SLKSLKQVSSGAAPAN---SKIIEDFVGAFPHVDFIQGYGMTESTAVG----- 365
L L SL+ + P + + I + +G V I Y TE+ G
Sbjct: 346 PALLRKHDLSSLRALFLAGEPLDEPTASWISEALG----VPVIDNYWQTET---GWPILA 398
Query: 366 -TRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP---GTMKEYIN 421
RG + ++ S G+ K+++ V G P G L + GP G M+
Sbjct: 399 IARGVEDRP-TRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWG 457
Query: 422 NADATMSTIDKEGWLHTGDIAY--FD-----EDGYLYIVDRLKEVIKYNGYQISPADLET 474
+ D + T W G Y FD DGY +I+ R +VI G+++ ++E
Sbjct: 458 DDDRFVKTY----WSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEE 513
Query: 475 VLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLT--------EAAVIDYLAQRVAP 526
+ HP + +VAV G D + G++ VAFVV +D +L E ++ + ++
Sbjct: 514 SISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGA 573
Query: 527 YKKVRRVVFTKSIPKSAAGKVLRRELR 553
+ RV F ++PK+ +GK+LRR ++
Sbjct: 574 VARPARVWFVSALPKTRSGKLLRRAIQ 600
|
Length = 629 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 7e-19
Identities = 115/530 (21%), Positives = 198/530 (37%), Gaps = 89/530 (16%)
Query: 68 ISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNP-- 125
+SY +L +A LR G+ V + S V LA+L G +P++P
Sbjct: 2029 LSYAELDSRANRLAHRLRA-RGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNY 2087
Query: 126 ----------------LLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTT-PVVAV- 167
LL+ + +++ L L + + + T P V +
Sbjct: 2088 PAERLAYMLEDSGAALLLTQRHLLERLPLPAGVARLPL---DRDAEWADYPDTAPAVQLA 2144
Query: 168 PENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNF 227
ENL A ++Y+SG+TG KG ++HG
Sbjct: 2145 GENL---------------------------------AYVIYTSGSTGLPKGVAVSHGAL 2171
Query: 228 IAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLS--LGPSVVVMR---R 282
+A + +YE ++ F + L + V++R
Sbjct: 2172 VA----HCQAAGERYELSPADCEL-----QFMSFSFDGAHEQWFHPLLNGARVLIRDDEL 2222
Query: 283 FEASEMLKVIDKYGVT--HFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKII 340
++ ++ ++++GVT FP P L L + A+ G ++ G + +
Sbjct: 2223 WDPEQLYDEMERHGVTILDFP--PVYLQQLAEHAE-RDGRPPA-VRVYCFGGEAVPAASL 2278
Query: 341 EDFVGAFPHVDFIQGYGMTESTAVGTR---GFNTKKFSKYFSVGLLAPNIQAKVVDWVNG 397
A V GYG TE+ + Y +G N +A ++D +
Sbjct: 2279 RLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILD-ADL 2337
Query: 398 CFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLH-------TGDIAYFDEDGYL 450
L PG GEL+L G G + Y+N T + + TGD+A + DG +
Sbjct: 2338 NLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVV 2397
Query: 451 YIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGST 510
+ R+ +K G++I ++E L HP + + V A D G+ VA+VV D +
Sbjct: 2398 EYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVV-AQDGASGKQLVAYVVPDDAAE 2456
Query: 511 LTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560
A + +LA R+ Y V + +P + GK+ R+ L K S+L
Sbjct: 2457 DLLAELRAWLAARLPAYMVPAHWVVLERLPLNPNGKLDRKALPKPDVSQL 2506
|
Length = 5163 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 1e-18
Identities = 99/340 (29%), Positives = 152/340 (44%), Gaps = 64/340 (18%)
Query: 203 DTAAILYSSGTTGASKGAELTHGN---FIAAVELFV-RFEASQYEYLSSEAVFLAVLPMF 258
D I+Y+SGT+G KG LTH F+ V+LF+ +FE + ++ + V+L+ LP+
Sbjct: 221 DICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFE----DKMTHDDVYLSFLPLA 276
Query: 259 HI------------------YGLSLFAL--GLLSLGPSVV--VMRRFE--------ASEM 288
HI Y L AL L+ L P+++ V R FE A +
Sbjct: 277 HILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQE 336
Query: 289 LK--------VIDKY-------GVTHFPVVP-PILMALTKAAKGLCGNSLKSLKQVSSGA 332
L + KY G +H P +A K L G L+ + SG
Sbjct: 337 LNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGR----LRLLISGG 392
Query: 333 APANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVV 392
AP +++I E+F+ +QGYG+TE+ T GF + +VG A + ++
Sbjct: 393 APLSTEI-EEFLRVTSCAFVVQGYGLTETLGPTTLGF-PDEMCMLGTVGAPAVYNELRLE 450
Query: 393 DWVNGCFLPPG--STGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYL 450
+ + P G GE+ +RG Y N + T + K+GW HTGDI +G L
Sbjct: 451 EVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILPNGVL 509
Query: 451 YIVDRLKEVIKYN-GYQISPADLETVLICHPEILDVAVTG 489
I+DR K +IK + G ++ LE V +P + D+ V G
Sbjct: 510 KIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYG 549
|
Length = 660 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 2e-18
Identities = 101/512 (19%), Positives = 183/512 (35%), Gaps = 62/512 (12%)
Query: 65 GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMN 124
G ++Y QL +A+ ++ + + +++ + V FL + G IP++
Sbjct: 23 GQELTYQQLKEQSDRLAAFIQKR-ILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVD 81
Query: 125 ---PLLSVSEIKKQV----TLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKE 177
P + I + + ++S+ T ++ + + +
Sbjct: 82 TSIPSERIEMIIEAAGPELVIHTAELSIDAVG------------TQIITLS--ALEQAET 127
Query: 178 GRFS-DFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVR 236
F + G D I+Y+SG+TG KG +++H N ++ +
Sbjct: 128 SGGPVSFDHAVKG------------DDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLA 175
Query: 237 -FEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLK--VID 293
F S+ + ++A F L + +Y L + G L + E L ++
Sbjct: 176 DFPLSEGKQFLNQAPFSFDLSVMDLYP-CLASGGTLHCLDKDITNNFKLLFEELPKTGLN 234
Query: 294 KYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFI 353
+ T P + + + L K + + FP
Sbjct: 235 VWVST------PSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIY 288
Query: 354 QGYGMTESTAVGTRGFNTKKF---SKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWL 410
YG TE+T T T++ +G P++ ++D G LP G GE+ +
Sbjct: 289 NTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVI 347
Query: 411 RGPGTMKEYINNADATMSTIDKEGWL---HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQI 467
GP K Y+NN + T TGD DG L+ RL IK +GY+I
Sbjct: 348 VGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTI-TDGQLFYQGRLDFQIKLHGYRI 406
Query: 468 SPADLETVLICHPEILDVAVTGAMD---KVLGEIPVAFVV----RRDGSTLTEAAVIDYL 520
D+E L I V + KV E +A +V + A+ L
Sbjct: 407 ELEDIEFNLRQSSYIESAVVVPKYNKDHKV--EYLIAAIVPETEDFEKEFQLTKAIKKEL 464
Query: 521 AQRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
+ + Y R+ ++ +P +A GK+ R+ L
Sbjct: 465 KKSLPAYMIPRKFIYRDQLPLTANGKIDRKAL 496
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 9e-18
Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 14/169 (8%)
Query: 330 SGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQA 389
+GAAP + + +E F+ ++ ++ YGM+E++ G + + + S G P +
Sbjct: 325 TGAAPISRETLEFFLSL--NIPIMELYGMSETS--GPHTVSNPQNYRLLSCGKALPGCET 380
Query: 390 KVVDW-VNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDG 448
K+ + +G GE+ + G Y+N + T ID++GWLH+GD+ + D+DG
Sbjct: 381 KIHNPDADG-------IGEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDG 433
Query: 449 YLYIVDRLKEVIKY-NGYQISPADLE-TVLICHPEILDVAVTGAMDKVL 495
+LYI R+KE+I G + P +E V P I + + G K L
Sbjct: 434 FLYITGRIKELIITAGGENVPPVPIEEAVKKELPIISNAMLVGDKRKFL 482
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 3e-17
Identities = 120/527 (22%), Positives = 204/527 (38%), Gaps = 103/527 (19%)
Query: 69 SYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLS 128
++ +L VA+ + G GD V L + N + F ++L L +G +N L
Sbjct: 5 TFRELNEYSNKVANFFQAQ-GYRSGDVVALFMENRLEFVALWLGLAKIGVETALINSNLR 63
Query: 129 VSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTT-PVVAVPENLVNDFKEGRFSDFHKLI 187
+ + +T+ K K I+ +D L + +T P N
Sbjct: 64 LESLLHCITVSKAKA----LIFNLLDPLLTQSSTEPPSQDDVNF---------------- 103
Query: 188 AGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGN--FIAAVELFVRFEASQYEY- 244
+D +Y+SGTTG K A + H IAA + Y +
Sbjct: 104 --------------RDKLFYIYTSGTTGLPKAAVIVHSRYYRIAA--------GAYYAFG 141
Query: 245 LSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR-FEASEMLKVIDKYGVTHFPVV 303
+ E V LP++H G + +G L S VV+R+ F AS KY T
Sbjct: 142 MRPEDVVYDCLPLYHSAG-GIMGVGQALLHGSTVVIRKKFSASNFWDDCVKYNCT----- 195
Query: 304 PPILMALTKAAKGLCGNSLKSLKQ-------VSSGAAPANSKIIEDFVGAF--PHVDFIQ 354
I+ + + + L +Q V +G P +I E FV F P +
Sbjct: 196 --IVQYIGEICRYLLAQPPSEEEQKHNVRLAVGNGLRP---QIWEQFVRRFGIPQIGEF- 249
Query: 355 GYGMTESTA--------VGTRGFNTKKFSKYFSVGLLAPN-IQAKVVDWVNGCFLP--PG 403
YG TE + VG GFN++ + + L+ + +++ +G +P PG
Sbjct: 250 -YGATEGNSSLVNIDNHVGACGFNSRILPSVYPIRLIKVDEDTGELIRDSDGLCIPCQPG 308
Query: 404 STGELWLRGPGTMKE---------YINNADATMSTIDKEGWLH------TGDIAYFDEDG 448
G L G + + Y+N AT I ++ + +GD+ DE G
Sbjct: 309 EPGLL----VGKIIQNDPLRRFDGYVNEG-ATNKKIARDVFKKGDSAFLSGDVLVMDELG 363
Query: 449 YLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGA-MDKVLGEIPVAFVVRRD 507
YLY DR + ++ G +S ++E +L + DV V G + V G +A +V +
Sbjct: 364 YLYFKDRTGDTFRWKGENVSTTEVEGILSNVLGLEDVVVYGVEVPGVEGRAGMAAIVDPE 423
Query: 508 GSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
+ LA+ + PY + + + + K+ K+ + +L+K
Sbjct: 424 RKVDLDRFSAV-LAKSLPPYARPQFIRLLPEVDKTGTFKLQKTDLQK 469
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 5e-17
Identities = 87/377 (23%), Positives = 149/377 (39%), Gaps = 41/377 (10%)
Query: 202 QDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQ--YEYLSSEAVFLAVLPMFH 259
Q+ A ++Y+SG+TG KGA HG + R A+Q Y+ +++ V F
Sbjct: 1718 QNLAYVIYTSGSTGRPKGAGNRHGALVN------RLCATQEAYQLSAADVVLQFTSFAFD 1771
Query: 260 IYGLSLFALGLLSLGPSVVVMRRFEAS----EMLKVIDKYGVTHFPVVPPILMALTKAAK 315
+ LF L G +V+ A +++++I++ VT VP +L L +
Sbjct: 1772 VSVWELF--WPLINGARLVI-APPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMD- 1827
Query: 316 GLCGNSLKSLKQVSSGAA-PANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKF 374
+ L + V G A + + ++ P YG TE+ T +K
Sbjct: 1828 EQVEHPLSLRRVVCGGEALEVEA--LRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKD 1885
Query: 375 ---SKYFSVGLLAPNIQAKVVDWVNGCFL-PPGSTGELWLRGPGTMKEYINNADATM--- 427
+G N+ ++D P G GEL+L G G + Y+N T
Sbjct: 1886 LEGRDSVPIGQPIANLSTYILD--ASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERF 1943
Query: 428 --STIDKEG--WLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEIL 483
G TGD+A + DG + + R+ +K G++I ++E L +
Sbjct: 1944 VADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVR 2003
Query: 484 DVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVI--------DYLAQRVAPYKKVRRVVF 535
+ V A D G+ VA+VV D + + ++L + Y +VF
Sbjct: 2004 EAVVI-AQDGANGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVF 2062
Query: 536 TKSIPKSAAGKVLRREL 552
+P + GK+ R+ L
Sbjct: 2063 LARMPLTPNGKLDRKAL 2079
|
Length = 3956 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 85.0 bits (210), Expect = 5e-17
Identities = 96/384 (25%), Positives = 152/384 (39%), Gaps = 40/384 (10%)
Query: 202 QDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIY 261
+ A ++Y+SG+TG KG ++HG+ + + +YE + V + F
Sbjct: 4694 DNLAYVIYTSGSTGRPKGVAVSHGSLVN----HLHATGERYELTPDDRVLQFMSFSFDGS 4749
Query: 262 GLSLFALGLLSLGPSVVVMRRFEASE---MLKVIDKYGVTHFPVVPPILMALTKAAKGLC 318
L+ L G S VV+R + + I ++ VT P L L + A+
Sbjct: 4750 HEGLY--HPLINGAS-VVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERD- 4805
Query: 319 GNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGT----RGFNTKKF 374
G G A A + + A V GYG TE+T R
Sbjct: 4806 GEPPSLRVYCFGGEAVAQASYDLAW-RALKPVYLFNGYGPTETTVTVLLWKARD-GDACG 4863
Query: 375 SKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATM-----ST 429
+ Y +G N V+D LP G GEL+L G G + Y+ T
Sbjct: 4864 AAYMPIGTPLGNRSGYVLD-GQLNPLPVGVAGELYLGGEGVARGYLERPALTAERFVPDP 4922
Query: 430 IDKEG--WLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHP---EILD 484
G TGD+A + DG + + R+ +K G++I ++E L HP E +
Sbjct: 4923 FGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRGFRIELGEIEARLREHPAVREAVV 4982
Query: 485 VAVTGAMDKVLGEIPVAFVVRRDG----STLTEAAVID----YLAQRVAPYKKVRRVVFT 536
+A GA+ K L V +VV +D + +A + D L +R+ Y +VF
Sbjct: 4983 IAQEGAVGKQL----VGYVVPQDPALADADEAQAELRDELKAALRERLPEYMVPAHLVFL 5038
Query: 537 KSIPKSAAGKVLRRELRKFLTSKL 560
+P + GK+ R+ L + S L
Sbjct: 5039 ARMPLTPNGKLDRKALPQPDASLL 5062
|
Length = 5163 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 6e-17
Identities = 123/497 (24%), Positives = 180/497 (36%), Gaps = 118/497 (23%)
Query: 57 TALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYL 116
AL L+ +++ QL + +A+G G+ +G V L NS + +LALL
Sbjct: 20 IALR--LNDEVLTWQQLCARIDQLAAGFAQQ-GVVEGSGVALRGKNSPETLLAYLALLQC 76
Query: 117 GAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFK 176
GA V+P+NP L +++ + +L L S V
Sbjct: 77 GARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENTFSALTSLHLQLVEGAH-------- 128
Query: 177 EGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAA----VE 232
A + +R A + +SG+TG K A T +A+ +
Sbjct: 129 -----------AVAWQP-QRL-------ATMTLTSGSTGLPKAAVHTAQAHLASAEGVLS 169
Query: 233 LFVRFEASQYEYLSSEAVFLAVLPMFHIYGLS-----LFALGLLSLGPSVVVMRRFEASE 287
L F A LS LP+FH+ G L+A L + + E
Sbjct: 170 LM-PFTAQDSWLLS--------LPLFHVSGQGIVWRWLYAGATLVVRD----KQPLEQ-- 214
Query: 288 MLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLK-SLKQVSSGAA--P------ANSK 338
L G TH +VP L L L S SLK V G A P A +
Sbjct: 215 ALA-----GCTHASLVPTQLWRL------LDNRSEPLSLKAVLLGGAAIPVELTEQAEQQ 263
Query: 339 IIEDFVGAFPHVDFIQGYGMTE--ST-----AVGTRGFNTKKFSKYFSVGLLAPNIQAKV 391
I + G YG+TE ST A G G VG P + K+
Sbjct: 264 GIRCWCG----------YGLTEMASTVCAKRADGLAG-----------VGSPLPGREVKL 302
Query: 392 VDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLY 451
VD GE+WLRG Y ++ EGW T D + +G L
Sbjct: 303 VD------------GEIWLRGASLALGYWRQGQLV-PLVNDEGWFATRDRGEWQ-NGELT 348
Query: 452 IVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTL 511
I+ RL + G I P ++E V+ HP + V V D G+ PVA V + +
Sbjct: 349 ILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAV 408
Query: 512 TEAAVIDYLAQRVAPYK 528
A ++L ++A ++
Sbjct: 409 VNLA--EWLQDKLARFQ 423
|
Length = 458 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 4e-16
Identities = 91/375 (24%), Positives = 149/375 (39%), Gaps = 33/375 (8%)
Query: 197 PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLP 256
+ ++ A ++Y+SG+TG KG + HG A+ + + A YE +++ V L
Sbjct: 3232 TRVMGENLAYVIYTSGSTGKPKGVGVRHG----ALANHLCWIAEAYELDANDRVLL---- 3283
Query: 257 MFHIYGLSLFA---LGLLSLGPSVVVM--RRFEASEMLKVIDKYGVTHFPVVPPILMALT 311
F + L L G +VV ++ E+ + I + ++ P L
Sbjct: 3284 -FMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFA 3342
Query: 312 KAAKGLCGNSLKSLKQVSSGAA--PANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTR-- 367
+ A G SL V G A PA E GYG TE+ T
Sbjct: 3343 EDAGGADCASLDIY--VFGGEAVPPAA---FEQVKRKLKPRGLTNGYGPTEAVVTVTLWK 3397
Query: 368 -GFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT 426
G + + Y +G V+D +P G GEL++ G G + Y T
Sbjct: 3398 CGGDAVCEAPYAPIGRPVAGRSIYVLDG-QLNPVPVGVAGELYIGGVGLARGYHQRPSLT 3456
Query: 427 MSTI------DKEGWLH-TGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICH 479
G L+ TGD+A + DG + + R+ +K G++I ++E L+ H
Sbjct: 3457 AERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQH 3516
Query: 480 PEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSI 539
P + + V A D G+ VA+VV D + D+LA + Y +++ ++
Sbjct: 3517 PSVREAVVL-ARDGAGGKQLVAYVVPADPQGDWRETLRDHLAASLPDYMVPAQLLVLAAM 3575
Query: 540 PKSAAGKVLRRELRK 554
P GKV R+ L
Sbjct: 3576 PLGPNGKVDRKALPD 3590
|
Length = 3956 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 4e-16
Identities = 78/359 (21%), Positives = 142/359 (39%), Gaps = 20/359 (5%)
Query: 202 QDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIY 261
++ A ++Y+SG+TG KG + H A+ + + Y + V F ++
Sbjct: 3196 ENLAYVIYTSGSTGKPKGVGIRHS----ALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVF 3251
Query: 262 GLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNS 321
LF L G VV+ + + +++ V+ L + +
Sbjct: 3252 VEELFWP--LMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHR 3309
Query: 322 LKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVG 381
SLK++ G + + + P YG TE+T T ++ +G
Sbjct: 3310 CTSLKRIVCGGEALPADLQQQVFAGLP---LYNLYGPTEATITVTHWQCVEEGKDAVPIG 3366
Query: 382 LLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI------DKEGW 435
N ++D + +P G+ GEL+L G G + Y N T E
Sbjct: 3367 RPIANRACYILD-GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERL 3425
Query: 436 LHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVL 495
TGD+A + DG + + R+ +K G++I ++E L+ HP + + V V
Sbjct: 3426 YRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVLA----VD 3481
Query: 496 GEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
G VA+VV D + A+ +L + Y ++F + +P + GK+ R+ L +
Sbjct: 3482 GRQLVAYVVPEDEAGDLREALKAHLKASLPEYMVPAHLLFLERMPLTPNGKLDRKALPR 3540
|
Length = 5163 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 5e-16
Identities = 82/359 (22%), Positives = 147/359 (40%), Gaps = 49/359 (13%)
Query: 212 GTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAV-FLAVLPMFHIYGLSLFALGL 270
G++G + A T A+V+ F Y + V VLP++H+ GL F
Sbjct: 130 GSSGQIRFAIHTWETLTASVQGF-------QRYFQLQQVNSFCVLPLYHVSGLMQFMRSF 182
Query: 271 LSLGPSVVVMRRFEASEMLKVIDKYGVTHF-PVVPPILMALTKAAKGLCGNSLKSLKQVS 329
L+ G V++ ++ + + + F +VP L L L L + +
Sbjct: 183 LTGGKLVIL--PYKRLKSGQELPPNPSDFFLSLVPTQLQRLL----QLRPQWLAQFRTIL 236
Query: 330 SGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTA-VGT-------RGFNTKKFSKYFSVG 381
G APA ++E + YGMTE+ + + T G N S G
Sbjct: 237 LGGAPAWPSLLEQ--ARQLQLRLAPTYGMTETASQIATLKPDDFLAGNN--------SSG 286
Query: 382 LLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDI 441
+ P+ Q +P TG + ++ Y +D +G T D+
Sbjct: 287 QVLPHAQIT---------IPANQTGNITIQAQSLALGYYPQ------ILDSQGIFETDDL 331
Query: 442 AYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVA 501
Y D GYL+I+ R + I G + PA++E ++ + DV V G D GE+ A
Sbjct: 332 GYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTA 391
Query: 502 FVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560
V +D S + + + +++P+K+ + + +P++ GK+ R++L++ +L
Sbjct: 392 IYVPKDPSI-SLEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQRL 449
|
Length = 452 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 79.7 bits (196), Expect = 1e-15
Identities = 122/511 (23%), Positives = 210/511 (41%), Gaps = 51/511 (9%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY---LGAIVIPM 123
++ Y +L V +A+ LR +S+G VL++ N P +L++L LGAI +
Sbjct: 41 ALRYRELVAEVGGLAADLRAQ-SVSRGSRVLVISDNG---PETYLSVLACAKLGAIAVMA 96
Query: 124 NPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDF 183
+ L ++ I++ + A + S + ++P V+ R S+
Sbjct: 97 DGNLPIAAIERFCQITD---PAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEH 153
Query: 184 HKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYE 243
A L +D A++++SGTTG K L + F A ++ + +
Sbjct: 154 SLDAA---SLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVT 210
Query: 244 YLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVV 303
++ E + + LP HI GL L+ G V + +L+++ V +V
Sbjct: 211 WVVGETTY-SPLPATHIGGLWWILTCLMHGGLCVTGGE--NTTSLLEILTTNAVATTCLV 267
Query: 304 PPILMALTKAAKGLCGNSLKSLKQVSSG---AAPANSKIIEDFVGAFPHVDFIQGYGMTE 360
P +L L K ++ SL+ V G A A+ + IE V Q YG++E
Sbjct: 268 PTLLSKLVSELK-SANATVPSLRLVGYGGSRAIAADVRFIEA-----TGVRTAQVYGLSE 321
Query: 361 S--TA--VGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPG-----STGELWLR 411
+ TA + T + K +VG P + + PG S G LW++
Sbjct: 322 TGCTALCLPTDDGSIVKIEAG-AVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIK 380
Query: 412 GPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPAD 471
P M Y NN + T + +GW++TGD+ EDG+ YI R E+I G I+P +
Sbjct: 381 SPANMLGYWNNPERTAEVL-IDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDE 439
Query: 472 LETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVR 531
++ + + + A D+ G + VV S + + L +A + R
Sbjct: 440 VDRIAEGVSGVREAACYEIPDEEFGALVGLAVV---ASAELDESAARALKHTIA--ARFR 494
Query: 532 R----------VVFTKSIPKSAAGKVLRREL 552
R +V IP++ +GKV+R L
Sbjct: 495 RESEPMARPSTIVIVTDIPRTQSGKVMRASL 525
|
Length = 540 |
| >gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 2e-15
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 436 LHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVL 495
+ T D+ Y E G L+ + R+ +VI +G + P ++E V++ P + + V D V
Sbjct: 293 IFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVA 352
Query: 496 GEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
GE A V+ + + ++ Q +APY+ + IPK+A GKV R+ L
Sbjct: 353 GERVKAKVISH--EEIDPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLL 407
|
Length = 414 |
| >gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 2e-15
Identities = 132/590 (22%), Positives = 211/590 (35%), Gaps = 131/590 (22%)
Query: 49 FSHKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPV 108
SH G +++ QL +++V + L+ GD V +L P I +
Sbjct: 58 HSHSAAGCAV--------ELTWTQLGVRLRAVGARLQQV--AGPGDRVAILAPQGIDYVA 107
Query: 109 IFLALLYLGAIVIPM-NPLL---------SVSEIKKQVTLCKTKISLAFTIYENVDKLRS 158
F A + G I +P+ P L ++ + + V L T + A + + L
Sbjct: 108 GFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVL--TTTAAAEAVEGFLRNLPR 165
Query: 159 WGTTPVVA---VPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTG 215
V+A +P++ F + D + + Y+SG+T
Sbjct: 166 LRRPRVIAIDAIPDSAGESF-------------------VPVELDTDDVSHLQYTSGSTR 206
Query: 216 ASKGAELTHGN-------FIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFAL 268
G E+TH I +++L R ++ LP++H GLS+
Sbjct: 207 PPVGVEITHRAVGTNLVQMILSIDLLDRNTHG-----------VSWLPLYHDMGLSMIGF 255
Query: 269 -----GLLSL-GPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGL--CGN 320
G +L P+ V R + L + G P A +GL G+
Sbjct: 256 PAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRV-VTAAPNFAYEWA-AQRGLPAEGD 313
Query: 321 SLKSLKQVS--SGAAPANSKIIEDFVGAF-----PHVDFIQGYGMTESTA-VGTRGFNTK 372
+ L V G+ P + + F AF P F YG+ E+T V T + +
Sbjct: 314 DI-DLSNVVLIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAE 372
Query: 373 KFSKYF------------------------SVGLLAPNIQAKVVDWVNGCFLPPGSTGEL 408
Y S G +A + A +VD G LP G GE+
Sbjct: 373 PSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEI 432
Query: 409 WLRGPGTMKEYINNADATMSTI------------------DKEGWLHTGDIAYFDEDGYL 450
WL G + Y + T T D WL TGD+ + DG L
Sbjct: 433 WLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY-LDGEL 491
Query: 451 YIVDRLKEVIKYNGYQISPADLE-TVLICHPEILDVAVTG-AMDKVLGEIPVAFVVRRDG 508
YI R+ ++I +G P D+E TV P + VT + E V R G
Sbjct: 492 YITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAG 551
Query: 509 STLTEAA-VIDYLAQRVAPYKKVR----RVVFTKSIPKSAAGKVLRRELR 553
++ + A ID + V+ + R+V +IP++ +GK+ RR R
Sbjct: 552 TSRADPAPAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACR 601
|
Length = 612 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 4e-15
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 29/145 (20%)
Query: 330 SGAAPANSKIIEDFVGAFPHVDF---IQGYGMTESTAVGTRGFNTKKFS---KYFSVGLL 383
SG P ++ E F +V F IQG+G+TE+ G + + + +VG L
Sbjct: 435 SGGGPLSAATQE-----FVNVVFGMVIQGWGLTETVCCGG-----IQRTGDLEPNAVGQL 484
Query: 384 APNIQAKVVDWVNGCFLP-------PGSTGELWLRGPGTMKEYINNADATMSTIDKEGWL 436
++ K++D P GE+ LRGP K Y + T +D++GW
Sbjct: 485 LKGVEMKLLD------TEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWF 538
Query: 437 HTGDIAYFDEDGYLYIVDRLKEVIK 461
HTGD+ +G L I+ R+K + K
Sbjct: 539 HTGDVGSIAANGTLRIIGRVKALAK 563
|
Length = 700 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 4e-15
Identities = 131/500 (26%), Positives = 202/500 (40%), Gaps = 97/500 (19%)
Query: 92 QGDAVLLLLPN-SIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIY 150
+G+ + L+LPN +I VIF A L I MN V + +T +I FT
Sbjct: 254 EGERIGLMLPNATISAAVIFGASLR-RRIPAMMNYTAGVKGLTSAIT--AAEIKTIFTSR 310
Query: 151 ENVDKLRSW----GTTPVVAV-PENLVNDF--KEGRFSDFHKLIAGKFDLVERPVIRQQD 203
+ +DK + W T V V E+L +D + + H L+ + ++P +D
Sbjct: 311 QFLDKGKLWHLPEQLTQVRWVYLEDLKDDVTTADKLWIFAHLLMPRLAQVKQQP----ED 366
Query: 204 TAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGL 263
A IL++SG+ G KG +H + +A VE ++ A + F++ LP+FH +GL
Sbjct: 367 AALILFTSGSEGHPKGVVHSHKSLLANVEQ-IKTIAD----FTPNDRFMSALPLFHSFGL 421
Query: 264 SLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNS-- 321
++ GL + P + F L H+ +VP + + L G S
Sbjct: 422 TV---GLFT--PLLTGAEVFLYPSPL---------HYRIVPE--LVYDRNCTVLFGTSTF 465
Query: 322 ------------LKSLKQVSSGA---APANSKIIEDFVGAFPHVDFIQGYGMTESTAVGT 366
L+ V +GA + ++ +D G + ++GYG+TE V +
Sbjct: 466 LGNYARFANPYDFARLRYVVAGAEKLQESTKQLWQDKFG----LRILEGYGVTECAPVVS 521
Query: 367 RGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGST--GELWLRGPGTMKEYI---- 420
N +K +VG + P + A+++ PG G L L+GP M Y+
Sbjct: 522 --INVPMAAKPGTVGRILPGMDARLLS-------VPGIEQGGRLQLKGPNIMNGYLRVEK 572
Query: 421 ---------NNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPAD 471
NA M GW TGDI FDE G++ I R K K G +S
Sbjct: 573 PGVLEVPTAENARGEMER----GWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVS--- 625
Query: 472 LETV----LICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPY 527
LE V L P+ A D GE V F S LT + Y + P
Sbjct: 626 LEMVEQLALGVSPDKQH-ATAIKSDASKGEALVLFTT---DSELTREKLQQYAREHGVPE 681
Query: 528 KKV-RRVVFTKSIPKSAAGK 546
V R + + K +P +GK
Sbjct: 682 LAVPRDIRYLKQLPLLGSGK 701
|
Length = 718 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 6e-15
Identities = 126/534 (23%), Positives = 216/534 (40%), Gaps = 87/534 (16%)
Query: 58 ALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117
AL D+ Y SY ++ V ++A+ LR G+ GD+V + LP S++ + A++ G
Sbjct: 476 ALADA--RYQFSYREMREQVVALANLLRER-GVKPGDSVAVALPRSVFLTLALHAIVEAG 532
Query: 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKE 177
A +P++ + ++ L + SL T + +
Sbjct: 533 AAWLPLDTGYPDDRL--KMMLEDARPSLLITTAD------------------------QL 566
Query: 178 GRFSDFHKLIAGKFDLV-----ERPVIRQQ--DTAAILYSSGTTGASKGAELTHGNFIAA 230
RF+D L + ++ P+ Q TA I+++SG+TG KG + A
Sbjct: 567 PRFADVPDLTSLCYNAPLAPQGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQT---AI 623
Query: 231 VELFVRFEASQYEY-LSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEA---- 285
V R Q Y L+++ V L P + +S++ + + +VM EA
Sbjct: 624 VN---RLLWMQNHYPLTADDVVLQKTPC--SFDVSVWEFFWPFIAGAKLVMAEPEAHRDP 678
Query: 286 SEMLKVIDKYGVT--HFPVVPPILMA-LTKAAKGLCGNSLKSLKQV-SSGAA-PANSKII 340
M + +YGVT HF VP +L A + S SL+QV SG A PA+ +
Sbjct: 679 LAMQQFFAEYGVTTTHF--VPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPAD--LC 734
Query: 341 EDFVGAFPHVDFIQGYGMTEST-------AVGTRGFNTKKFSKYFSVGLLAPNIQAKVVD 393
++ YG TE+ A G + S +G N +++D
Sbjct: 735 REWQQLT-GAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSS--VPIGYPVWNTGLRILD 791
Query: 394 WVNGCFLPPGSTGELWLRGPGTMKEYINNADATMST------IDKEGWLHTGDIAYFDED 447
+PPG G+L+L G + Y+ D T S E TGD+A + +D
Sbjct: 792 -ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDD 850
Query: 448 GYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIP-------- 499
G + + R + +K G +I +++ + P DV V+ +
Sbjct: 851 GAVEYLGRSDDQLKIRGQRIELGEIDRAMQALP---DVEQAVTHACVINQAAATGGDARQ 907
Query: 500 -VAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
V ++V + G L +A+ L +R+ P+ ++ +P SA GK+ R+ L
Sbjct: 908 LVGYLVSQSGLPLDTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKAL 961
|
Length = 1296 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 2e-14
Identities = 96/452 (21%), Positives = 151/452 (33%), Gaps = 88/452 (19%)
Query: 65 GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMN 124
G + +Y + + LV A L + GD V + NS F ++LAL +GA+ +N
Sbjct: 3 GKTWTYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFIN 62
Query: 125 PLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFH 184
LS + C L+ G V+ P+
Sbjct: 63 YNLS----GDPLIHC----------------LKISGAKFVIVDPD--------------- 87
Query: 185 KLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY 244
D AA++Y+SGTTG KG ++ + S
Sbjct: 88 ------------------DPAALIYTSGTTGLPKGCAISWRRTLVTSNPL-----SHDLN 124
Query: 245 LSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVP 304
L +P++H L L G ++ + R+F AS+ K + T V
Sbjct: 125 LQFPDRTYTCMPLYHGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQYVG 184
Query: 305 PILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTEST-- 362
+ L K +G P I E F F + + Y TE
Sbjct: 185 ELCRYLLATPPSPYDRDHKVRVAYGNGLRP---DIWERFRERFNVPEIGEFYAATEGVFA 241
Query: 363 ------------AVGTRGFNTK-KFSKYFSVGLLAPNIQAKVVDWVNG-CFLPP-GSTGE 407
A+G G + + + P + D G C P G GE
Sbjct: 242 FTNHNVGPFTAGAIGFSGLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGEPGE 301
Query: 408 LWLRGP----GTMKEYINNADATMSTIDK------EGWLHTGDIAYFDEDGYLYIVDRLK 457
+ R + Y+ N DAT S + + + W TGD+ D DG Y +DRL
Sbjct: 302 MLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDRLG 361
Query: 458 EVIKYNGYQISPADLETVLICHPEILDVAVTG 489
+ ++ +S ++ VL P + + V G
Sbjct: 362 DTFRWKSENVSTGEVADVLGAIPSVAEANVYG 393
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 2e-14
Identities = 94/354 (26%), Positives = 138/354 (38%), Gaps = 65/354 (18%)
Query: 189 GKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSE 248
G D E P ++ D I+Y+SGTTG KG LT+ IA V + E
Sbjct: 208 GSLD-CELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEE 266
Query: 249 AVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMR---RF--EASEMLKVIDKYGVTHFPVV 303
+ + LP+ H+Y + +S G S+ + R+ E + LK T F V
Sbjct: 267 DSYFSYLPLAHVYD-QVIETYCISKGASIGFWQGDIRYLMEDVQALK------PTIFCGV 319
Query: 304 PPI-------LMALTKAAKGL------------CGNSLKSLKQVSSGAAPANSKIIED-- 342
P + +M + L GN K LKQ A+P +++ D
Sbjct: 320 PRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQ--EEASPRLDRLVFDKI 377
Query: 343 -----------FVGAFP---HVD----------FIQGYGMTESTAVGTRGFNTKKFSKYF 378
GA P HV+ QGYG+TES G FS
Sbjct: 378 KEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCG-GCFTSIANVFSMVG 436
Query: 379 SVGLLAPNIQAKVVDWVNGCF--LPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWL 436
+VG+ I+A++ + L GE+ LRG Y D T + +GW
Sbjct: 437 TVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWF 495
Query: 437 HTGDIAYFDEDGYLYIVDRLKEVIKYN-GYQISPADLETVLICHPEILDVAVTG 489
HTGDI + +G + I+DR K + K + G ++ +LE P I + V G
Sbjct: 496 HTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYG 549
|
Length = 660 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 4e-14
Identities = 94/396 (23%), Positives = 160/396 (40%), Gaps = 44/396 (11%)
Query: 181 SDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEAS 240
+ + A ++ D I+++SGTTG KG +++H N ++ F +
Sbjct: 122 DELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVS----FTNWMLE 177
Query: 241 QYEYLSSEAVFLAVLPMFHIYGLSLFALGL-LSLGPSVVVMRRFEASEMLKVIDKYGV-- 297
+ L FL P + + LS+ L L+ G ++V + + + +
Sbjct: 178 DFA-LPEGPQFLNQAP--YSFDLSVMDLYPTLASGGTLVALPK-------DMTANFKQLF 227
Query: 298 THFPVVP-------PILMALTKAAKGLCGNSLKSLKQ-VSSGAAPANSKIIEDFVGAFPH 349
P +P P + L +L + G + K + + FP
Sbjct: 228 ETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPH-KTAKKLLERFPS 286
Query: 350 VDFIQGYGMTEST-AVGTRGFNTKKFSKYFS--VGLLAPNIQAKVVDWVNGCFLPPGSTG 406
YG TE+T AV + + +Y +G P+ ++D G LP G G
Sbjct: 287 ATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQG 345
Query: 407 ELWLRGPGTMKEYINNADAT---MSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYN 463
E+ + GP K Y+NN + T T D + HTGD Y + DG L+ R+ IK N
Sbjct: 346 EIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLE-DGLLFYQGRIDFQIKLN 404
Query: 464 GYQISPADLETVLICHPEILDVAVTGAM--DKVLGEIPVAFVVRRDGS-----TLTEAAV 516
GY+I ++E L + V KV + +A+VV ++ LT A+
Sbjct: 405 GYRIELEEIEQNLRQSSYVESAVVVPYNKDHKV--QYLIAYVVPKEEDFEREFELT-KAI 461
Query: 517 IDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
L +R+ Y R+ ++ S+P + GK+ R+ L
Sbjct: 462 KKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKAL 497
|
Length = 503 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 1e-13
Identities = 64/257 (24%), Positives = 106/257 (41%), Gaps = 19/257 (7%)
Query: 51 HKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHF---GISQGDAVLLLLPNSIYFP 107
+H R AL+ SISY +L A H G+ +GD V LL+ N +
Sbjct: 48 ARHPDRPALLFE--DQSISYAELNARANRYA----HWAAARGVGKGDVVALLMENRPEYL 101
Query: 108 VIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTK-ISLAFTIYENVDKLRSWGTTPVVA 166
+L L LGA+V +N + + + L K + + + E ++ R+ P
Sbjct: 102 AAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRL 161
Query: 167 VPENLVNDFKEGRFSDFHKLIAG--KFDLVERPVIRQQDTAAILYSSGTTGASKGAELTH 224
+ D AG + R + +DTA +Y+SGTTG K A ++H
Sbjct: 162 WVAGGDTLDDPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSH 221
Query: 225 GNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALG-LLSLGPSVVVMRRF 283
++ A+ F L+ + V LP++H G A +L+ G ++ + R+F
Sbjct: 222 MRWLKAMGGFGGLLR-----LTPDDVLYCCLPLYHNTGG-TVAWSSVLAAGATLALRRKF 275
Query: 284 EASEMLKVIDKYGVTHF 300
AS + +Y T F
Sbjct: 276 SASRFWDDVRRYRATAF 292
|
Length = 600 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 4e-13
Identities = 113/463 (24%), Positives = 175/463 (37%), Gaps = 68/463 (14%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPL 126
++Y + V ++A L G+ G V++L NSI ++ LA + G P++P
Sbjct: 80 KVTYGEAKRAVDALAQALLD-LGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPA 138
Query: 127 LSV-----SEIKKQVTLCKTKISLA-----FTIYENVDKLRSWGTTPVVAVPENLVNDFK 176
S+ +++K L K ++ A F + L T V
Sbjct: 139 YSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFA--RALAALDLLDVT--VVHVTGPGEGIA 194
Query: 177 EGRFSDFHKLIAGKF-DLVERPVIR-QQDTAA-ILYSSGTTGASKGAELTHGNF---IAA 230
F+D L A V + DT A L++SG+TG K T IA
Sbjct: 195 SIAFAD---LAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAM 251
Query: 231 VELFVRFEASQYEYLSSEAVFLAVLPMFHIYG------LSLFALGLLSLGPSVVVMRRFE 284
E E V L +P H G L+ G L + + FE
Sbjct: 252 QEQLRPREPD-----PPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFE 306
Query: 285 ASEMLKVIDKYGVTHFPVVPPILMALTKAA---KGLCGNSLKSLKQVSSGAAPANSKIIE 341
E ++ + + T + VP L +A L + K+L+ ++ G A + + E
Sbjct: 307 --ETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYE 364
Query: 342 DF----VGAFPH-VDFIQGYGMTES--TAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDW 394
V H + F GYG TE+ T GT ++T++ +GL P ++ K+
Sbjct: 365 RMQALAVRTTGHRIPFYTGYGATETAPTTTGTH-WDTERVG---LIGLPLPGVELKLA-- 418
Query: 395 VNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYF-DED----GY 449
P G E+ ++GP Y + + T + D+EG+ GD A F D D G
Sbjct: 419 ------PVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKG- 471
Query: 450 LYIVDRLKEVIKY-NGYQISPADLET--VLICHPEILDVAVTG 489
L R+ E K G +S L V C P I D V G
Sbjct: 472 LIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAG 514
|
Length = 624 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 9e-13
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 20/140 (14%)
Query: 354 QGYGMTESTAVGTRGFNTKKFSKY--FSVGLLAPNIQA---KVVDWVNGCFL---PPGST 405
QGYG+TE+ A T FS++ SVG + P + K+V W G +L P
Sbjct: 450 QGYGLTETCAGAT-------FSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPR 502
Query: 406 GELWLRGPGTMKEYINNADAT--MSTIDKEG--WLHTGDIAYFDEDGYLYIVDRLKEVIK 461
GE+ + GP Y N + T + +D+ G W +TGDI F DG L I+DR K+++K
Sbjct: 503 GEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVK 562
Query: 462 Y-NGYQISPADLETVLICHP 480
+G +S +E L P
Sbjct: 563 LQHGEYVSLGKVEAALSVSP 582
|
Length = 696 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-12
Identities = 89/366 (24%), Positives = 148/366 (40%), Gaps = 37/366 (10%)
Query: 205 AAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY-LSSEAVFLAVLPM-FHIYG 262
A ++Y+SG+TG KG TH A E R + Q Y L V + P+ F +
Sbjct: 1276 AYVIYTSGSTGQPKGVGNTHA---ALAE---RLQWMQATYALDDSDVLMQKAPISFDVSV 1329
Query: 263 LSLF-----ALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPIL-MALTKAAKG 316
F L+ GP + + +++ +YGVT VPP+L + + +
Sbjct: 1330 WECFWPLITGCRLVLAGPG----EHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLAA 1385
Query: 317 LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSK 376
C SL+++ SG +++ + P V YG TE TA+ + +
Sbjct: 1386 ACT----SLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTE-TAINVTHWQCQAEDG 1440
Query: 377 YFS-VGLLAPNIQAKVVDWVNGCF--LPPGSTGELWLRGPGTMKEYINNADATMSTI--- 430
S +G N+ +V+D LPPG GEL + G G + Y+ T
Sbjct: 1441 ERSPIGRPLGNVLCRVLD---AELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPD 1497
Query: 431 ----DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVA 486
D TGD A ++ DG L + RL + +K G+++ P +++ L+ P + A
Sbjct: 1498 PLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAA 1557
Query: 487 VTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGK 546
V + G V + G + LA + Y +++ +P +GK
Sbjct: 1558 VL-VREGAAGAQLVGYYTGEAGQEAEAERLKAALAAELPEYMVPAQLIRLDQMPLGPSGK 1616
Query: 547 VLRREL 552
+ RR L
Sbjct: 1617 LDRRAL 1622
|
Length = 4334 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 9e-11
Identities = 105/457 (22%), Positives = 165/457 (36%), Gaps = 60/457 (13%)
Query: 68 ISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNP-- 125
++Y + V+++A L G+S +++L NSI ++ LA +Y G V P++P
Sbjct: 26 VTYAEALRQVRAIAQALLDL-GLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAY 84
Query: 126 -LLS--VSEIKKQVTLCKTKISLAFTIYENVDKLRSWG--TTPVVAVPENLVNDFKEGRF 180
LLS ++++ L A L + G PVVAV
Sbjct: 85 SLLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPVVAV-RGAPGGPAIAFA 143
Query: 181 SDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNF---IAAVELFVRF 237
+ D + A L++SG+TG K TH A + F
Sbjct: 144 ALLATPPTAAVD-AAFAAVGPDTVAKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPF 202
Query: 238 EASQYEYLSSEAVFLAVLPMFHIYGLSLFALGL-LSLGPSVV------VMRRFEASEMLK 290
+ V + LP H +G + + L G ++ V FE E L+
Sbjct: 203 LTEE------PPVLVDWLPWNHTFGGN-HNFNMVLYNGGTLYIDDGKPVPGLFE--ETLR 253
Query: 291 VIDKYGVTHFPVVPPILMALTKAAKG---LCGNSLKSLKQVS-SGAAPANS------KII 340
+ + T + VP L A + L K L+ + +GAA +
Sbjct: 254 NLREVSPTVYFNVPKGFEMLVDALERDAALRRRFFKRLRLLFYAGAALPQDVWDRLQALA 313
Query: 341 EDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFL 400
G + G G TE+ T F + +GL AP + K+V
Sbjct: 314 VRTTGE--RIPMTSGLGATETAPTAT--FVHWPTDRSGVIGLPAPGTELKLV-------- 361
Query: 401 PPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYF-DED----GYLYIVDR 455
P G E+ ++GP Y + + T D+EG+ GD F D D G L R
Sbjct: 362 PNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGDAVRFVDPDDPERG-LVFDGR 420
Query: 456 LKEVIKY-NGYQISPADLETVLI--CHPEILDVAVTG 489
+ E K +G +S L L+ P + D V G
Sbjct: 421 VAEDFKLASGTWVSVGALRVALVAALAPLVQDAVVAG 457
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPL 126
S+++ +L V +A L G+ +GD V LL NSI F ++FLALL LGA+V+P+NP
Sbjct: 1 SLTFQELDQRVSQLAEQLAAL-GVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPR 59
Query: 127 LSVSEIKKQVTL 138
L E+++Q+
Sbjct: 60 LPQEELQQQLAD 71
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 4e-10
Identities = 70/311 (22%), Positives = 124/311 (39%), Gaps = 74/311 (23%)
Query: 205 AAILYSSGTTGASKGAELTHGNFIAAV------ELFVRFEASQYEYLSSEAVFLAVLPMF 258
+I+Y+SGT+G KG L++ N V +F ++ + L+ LP+
Sbjct: 307 TSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTH---------LSYLPIS 357
Query: 259 HIY--------------------GLSLFALGLLSLGPSVV-----VMRRFEASEMLKVID 293
HIY ++ F+ + + +++ V R + M + I+
Sbjct: 358 HIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTE-IN 416
Query: 294 KYGVTHFPVVPPILMALTKAAK-GLCGNSLKSLKQVSS---------------GAAPANS 337
+V IL +L K+ G L+ + +SS G +
Sbjct: 417 NLPPLKRFLVKKIL-SLRKSNNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSP 475
Query: 338 KIIEDFVGAFPHVDFIQGYGMTESTAV----GTRGFNTKKFSKYFSVGL-LAPNIQAKVV 392
KI E+ +V++ QGYG+TE+T NT+ S+G ++PN + KV
Sbjct: 476 KIAEEL-SVLLNVNYYQGYGLTETTGPIFVQHADDNNTE------SIGGPISPNTKYKVR 528
Query: 393 DW--VNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYL 450
W P GEL ++ Y + T + ++G+ TGDI +++G L
Sbjct: 529 TWETYKATDTLP--KGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSL 586
Query: 451 YIVDRLKEVIK 461
+DR K ++K
Sbjct: 587 TFLDRSKGLVK 597
|
Length = 746 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 6e-10
Identities = 112/454 (24%), Positives = 161/454 (35%), Gaps = 103/454 (22%)
Query: 93 GDAVLLLLPNSIYFPVIFLALLYLGAIVIPM-NPLLS--VSEIKKQVTLCKTKISLAFT- 148
GD V +L P ++ + + F LY G I +P+ +P V + + C L T
Sbjct: 79 GDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTD 138
Query: 149 IYENVDKL---RSWGTTPVV----AVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQ 201
E V K R P V AVP+ + + P +
Sbjct: 139 SAEGVRKFFRARPAKERPRVIAVDAVPDEVGATW-------------------VPPEANE 179
Query: 202 QDTAAILYSSGTTGASKGAELTHGNFIA-AVELFVRFEASQYEYLSSEAVFLAVLPMFHI 260
A + Y+SG+T G ++TH N +++ E + V + LP FH
Sbjct: 180 DTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQE----GDRGV--SWLPFFHD 233
Query: 261 YGLSLFALGLLSLGPSVVVM------RRFE--ASEMLKVIDKYGVTHFPVVPPILMALTK 312
GL L L LG + M RR E+ + G T F P
Sbjct: 234 MGLITVLLPAL-LGHYITFMSPAAFVRRPGRWIRELARKPGGTGGT-FSAAPNFAFEHA- 290
Query: 313 AAKGLCGN-----SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ-----GYGMTEST 362
AA+GL + L ++K + +G+ P + + F AF YGM E+T
Sbjct: 291 AARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEAT 350
Query: 363 A-VGTRGFNTKKFSKYFS-----------VGLLAPNIQAKV-------------VDWVNG 397
V T + + Y V APN A+V VD
Sbjct: 351 LFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETA 410
Query: 398 CFLPPGSTGELWLRGPGTMKEYINNADATMSTI-----------------DKEGWLHTGD 440
LP G GE+WL G Y + T +T D W+ TGD
Sbjct: 411 SELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGD 470
Query: 441 I-AYFDEDGYLYIVDRLKEVIKYNGYQISPADLE 473
YF DG LYI R+K+++ +G P DLE
Sbjct: 471 YGVYF--DGELYITGRVKDLVIIDGRNHYPQDLE 502
|
Length = 631 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
R ALVD G S++Y +L +A L G+ GD V +L P S + V++LA+
Sbjct: 2 RIALVDG--GRSLTYGELDARSGRLAKAL-LALGLLPGDRVAVLAPKSAEYVVLYLAIWR 58
Query: 116 LGAIVIPMNPLLSVSEIKKQVT 137
G + +P+NP +E+ ++
Sbjct: 59 AGGVAVPLNPSYPAAELAYILS 80
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 19/159 (11%)
Query: 406 GELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGY 465
GE+ +RG M Y+ A ID + W TGD+ Y + G L + R KE+I G
Sbjct: 373 GEIEIRGASMMSGYLGQA-----PIDPDDWFPTGDLGYLVDGG-LVVCGRAKELITVAGR 426
Query: 466 QISPADLETVLICHPEILDVAV----TGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLA 521
I P ++E V + + AV TG G + A D EA +
Sbjct: 427 NIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPD-----EAGARSEVV 481
Query: 522 QRVAPYKKV--RRVVFTK--SIPKSAAGKVLRRELRKFL 556
QRVA V VVF S+P++++GK+ R +++ L
Sbjct: 482 QRVASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSL 520
|
Length = 525 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 4e-08
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Query: 401 PPGSTGELWLRGPGTMKEYINNADATMSTI-------DKEGWLHTGDIAYFDEDGYLYIV 453
P G+ GEL + G G + Y+ + T E TGD+A DG L V
Sbjct: 4062 PLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYV 4121
Query: 454 DRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTE 513
R+ +K GY+I ++E L E+ + AV + V G+ V ++V L +
Sbjct: 4122 GRIDHQVKIRGYRIELGEIEARLHEQAEVREAAV-AVQEGVNGKHLVGYLVPHQT-VLAQ 4179
Query: 514 AAVIDYLAQRVAP----YKKVRRVVFTKSIPKSAAGKVLRREL 552
A+++ + QR+ Y ++ +P +A GK+ R+ L
Sbjct: 4180 GALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKAL 4222
|
Length = 4334 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 2e-07
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPL 126
+Y +L V +A+GL G+ GD V L+L N F + AL LGA+ +P+N
Sbjct: 3 RYTYAELAERVNRLAAGLLAL-GVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTA 61
Query: 127 LSVSEIKKQVTLCKTKISLAFT 148
L E+ + L
Sbjct: 62 LRGEELAHILDHS--GARLIVV 81
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 179 RFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFE 238
FS+ KL GK + V+ + D A I+Y+SG+TG KG +THGN +A V +
Sbjct: 229 SFSEVEKL--GKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVV 286
Query: 239 ASQYEYLSSEAVFLAVLPMFHIYGLS 264
L V+LA LP+ HI L+
Sbjct: 287 PK----LGKNDVYLAYLPLAHILELA 308
|
Length = 696 |
| >gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009) | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-07
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 527 YKKVRRVVFTKSIPKSAAGKVLRRELRK 554
Y R V F +PK+ +GK+LRR LR
Sbjct: 1 YAVPREVEFVDELPKTRSGKILRRLLRA 28
|
This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 400 LPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLH-------TGDIAYFDEDGYLYI 452
+P G+TGEL++ G G + Y + T + + TGD+ DG +
Sbjct: 2527 VPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEY 2586
Query: 453 VDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLT 512
V R+ +K G++I ++E+ L+ HP + + V A+D G+ ++V
Sbjct: 2587 VGRIDHQVKIRGFRIELGEIESRLLEHPAVREAVVL-ALDTPSGKQLAGYLVSAVAGQDD 2645
Query: 513 EA------AVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
EA A+ +L Q++ Y ++ S+P +A GK+ RR L
Sbjct: 2646 EAQAALREALKAHLKQQLPDYMVPAHLILLDSLPLTANGKLDRRAL 2691
|
Length = 4334 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 70/320 (21%), Positives = 105/320 (32%), Gaps = 49/320 (15%)
Query: 48 IFSHKHNGRTALVD---SLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSI 104
+ H N A+ IS+ +L V +A+ LR G+ GD V LPN
Sbjct: 64 LLRHADNDPAAIYAAGEDGERREISWAELRSQVARLAAALRD-LGVKPGDRVAGYLPNVP 122
Query: 105 YFPVIFLALLYLGAIVIPMNPLLSV-------SEIKKQVTLC-------KTKISLAFTIY 150
+ LA +GAI +P V +I+ +V + I
Sbjct: 123 EAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIA 182
Query: 151 ENVDKLRSWGTTPVVAVPE-NLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQ---QDTAA 206
E V L S VV VP + +FS L + D +
Sbjct: 183 EIVKGLPS--LEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLW 240
Query: 207 ILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLP----MFHIYG 262
ILYSSGTTG K G + L M++
Sbjct: 241 ILYSSGTTGLPKCIVHGAGGTLLQHLKEHGLHCD----LRPGDRLFYYTTTGWMMWN--- 293
Query: 263 LSLFALGLLSLGPSVVVMRRFEASEML-------KVIDKYGVTHFPVVPPILMALTKAAK 315
+ + L G ++V+ ++ S + ++ K G+T F L AL KA
Sbjct: 294 ---WLVSGLLSGATLVL---YDGSPLYPDPDVLWRLAAKLGITIFGTSAKYLDALEKAGI 347
Query: 316 GLCGN-SLKSLKQVSSGAAP 334
L SL+ + S +P
Sbjct: 348 EPGRTHDLSSLRTILSTGSP 367
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 7e-07
Identities = 77/295 (26%), Positives = 120/295 (40%), Gaps = 68/295 (23%)
Query: 52 KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
++ R ALV G +Y + V ++A GL GI +GD V + PN + +
Sbjct: 28 RYPDREALVYRDQGLRWTYREFNEEVDALAKGL-LALGIEKGDRVGIWAPNVPEWVLTQF 86
Query: 112 ALLYLGAIVIPMNPLLSVSEIK---KQVTLCKTKISL-AF-------TIYENVDKLRSWG 160
A +GAI++ +NP +SE++ Q CK I+ F +YE +L +
Sbjct: 87 ATAKIGAILVTINPAYRLSELEYALNQSG-CKALIAADGFKDSDYVAMLYELAPELAT-- 143
Query: 161 TTPVVAVPENL-------------VNDFKEGRFSDFHKLIA--GKFDLVERPVIRQQ--- 202
P L + D K +F +L+A D E +
Sbjct: 144 -----CEPGQLQSARLPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDP 198
Query: 203 -DTAAILYSSGTTGASKGAELTHGN------FIAAVELFVRFEASQYEYLSSEA--VFLA 253
D I Y+SGTTG KGA LTH N FI EA + +E + +
Sbjct: 199 DDPINIQYTSGTTGFPKGATLTHRNILNNGYFIG--------EAMKL----TEEDRLCIP 246
Query: 254 VLPMFHIYGLSLFALGLLSLGPSVVVM-RRFEASEMLKVIDK------YGV-THF 300
V P++H +G+ L L ++ G ++V F+ L +++ YGV T F
Sbjct: 247 V-PLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMF 300
|
Length = 559 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 68 ISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLL 127
SY QL VA+ LR H G+ +GD VLL+LPN LA + LGA+VIP LL
Sbjct: 1 YSYAQLSKRSNRVANFLRKH-GVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLL 59
Query: 128 SVSEIKKQVTLCKTK 142
+ ++++ + + K K
Sbjct: 60 TPADLRDRFSRGKPK 74
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2) | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 9e-06
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 65 GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMN 124
Y+++Y +L+ +A L GI GD V+L+ P+ F F LY G I +P+
Sbjct: 7 LYTLTYGKLWSRAAKIAYALLKKLGIKPGDRVVLVYPDPEDFIAAFYGCLYAGLIPVPVE 66
Query: 125 PLLS 128
P LS
Sbjct: 67 PPLS 70
|
Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 54/208 (25%), Positives = 84/208 (40%), Gaps = 27/208 (12%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMN-P 125
++++ QL+ +VA LR H S GD ++L P + + V FL L G I +P++ P
Sbjct: 35 TLTWSQLYRRTLNVAEELRRH--GSTGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVP 92
Query: 126 LLSVSEIKKQVTLCKTKISLAFT-------IYENVDKLRSWGTTPVVAVPENLVNDFKEG 178
+ + L T S+ T + E V PV+ V + L D
Sbjct: 93 QGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEV-DLL--DLDSP 149
Query: 179 RFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVE-LFVRF 237
R SD + P TA + Y+SG+T G ++H N IA E L +
Sbjct: 150 RGSDA--------RPRDLP-----STAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDY 196
Query: 238 EASQYEYLSSEAVFLAVLPMFHIYGLSL 265
+ ++ LP +H GL L
Sbjct: 197 FGDTGGVPPPDTTVVSWLPFYHDMGLVL 224
|
Length = 578 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 400 LPPGSTGELWLRGPGTMKEYINNADATMSTID----------KEG-WLHTGDIAYFDEDG 448
P G+ GE+W+ G Y + T T EG WL TGD+ + +G
Sbjct: 392 CPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EG 450
Query: 449 YLYIVDRLKEVIKYNGYQISPADLET 474
L+IV R+K+++ +G P D+E
Sbjct: 451 ELFIVGRIKDLLIVDGRNHYPDDIEA 476
|
Length = 578 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 352 FIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLR 411
+ G GMTE+ T F T S+ ++GL AP + K+V P G E+ ++
Sbjct: 368 MMTGLGMTETAPSAT--FTTGPLSRAGNIGLPAPGCEVKLV--------PVGGKLEVRVK 417
Query: 412 GPGTMKEYINNADATMSTIDKEGWLHTGDIAYF-DED 447
GP Y + T D+EG+ +GD F D
Sbjct: 418 GPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPA 454
|
Length = 614 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
AL D ++SY +L +A+ LR G+ GD V +LL S LA+L
Sbjct: 3 AIALRDD--DRTLSYAELDERSNQLAARLRAL-GVGPGDRVGVLLERSADLVAALLAILK 59
Query: 116 LGAIVIPMNP---------LLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVA 166
GA +P++P +L +E + L LA+ IY + S G V
Sbjct: 60 AGAAYVPLDPSYPAERLQYMLEDAEPA--LLLTDPD-DLAYVIYTS----GSTGKPKGVE 112
Query: 167 VP-ENLVN 173
V LVN
Sbjct: 113 VSHRALVN 120
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 435 WLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKV 494
W +TGD+ D G+ VDRL + ++ G ++ ++E L P + + V G
Sbjct: 440 WFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGV---- 495
Query: 495 LGEIP-------VAFVVRRDGSTLTEAAVIDYLAQRVAPY 527
E+P +A +V DG+ AA+ +L +R+ Y
Sbjct: 496 --EVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAY 533
|
Length = 600 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 5e-04
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 48 IFSHKHNGRTALV---DSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSI 104
+ H+ + R A++ + +S+ +L V ++A+ LR G+ GD V LPN
Sbjct: 92 LLRHRRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRAL-GVGPGDRVAAYLPNIP 150
Query: 105 YFPVIFLALLYLGAI 119
V LA LGAI
Sbjct: 151 ETVVAMLATASLGAI 165
|
Length = 655 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 49 FSHKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPV 108
+ + A+V S++Y +L +A+ LR G+ V + L S V
Sbjct: 8 QAERTPDAIAVVCG--DESLTYAELNRRANRLAARLRAA-GVGPESRVGVCLRRSPDLVV 64
Query: 109 IFLALLYLGAIVIPMNP 125
LA+L GA +P++P
Sbjct: 65 ALLAVLKAGAAYVPLDP 81
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 16/66 (24%)
Query: 203 DTAAILYSSGTTGASKGAELTHGNFIAAV--------ELFVRFEASQYEYLSSEAVFLAV 254
D A I+Y+SGTTG KG THG+ A + +L E + + +
Sbjct: 265 DLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDE--------TYCSY 316
Query: 255 LPMFHI 260
LP+ HI
Sbjct: 317 LPLAHI 322
|
Length = 700 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPL 126
S++Y +L +A L G+ GD V L L S + V LA+L GA +P++P
Sbjct: 17 SLTYAELDRRANKLAHHLISL-GVRPGDIVALCLERSPWLYVAILAVLKAGAAYVPIDPS 75
Query: 127 LSVSEIKKQVTLCKTKI-------SLAFTIY 150
V ++ + + A+ IY
Sbjct: 76 APVERLQFIIEDSGATVVLTSSPDDPAYVIY 106
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 4/125 (3%)
Query: 435 WLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKV 494
W H GD G + I R + G +I A++ V+ PE+ D V G
Sbjct: 473 WRH-GDWIKITPHGGVIIYGRSDATLNPGGVRIGTAEIYRVVEKIPEVEDSLVVGQEVDD 531
Query: 495 LGEIPVAFVVRRDGSTLTEA---AVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRE 551
E FV R+G TL +A + + ++P ++ IP + +GK +
Sbjct: 532 GDERMPLFVKLREGVTLDDALVKRIRSAIRAALSPRHVPAEIIAVPDIPYTLSGKKVEVA 591
Query: 552 LRKFL 556
++K L
Sbjct: 592 VKKIL 596
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 65 GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMN 124
+SY + A LR G+ +GD V LL+ N + + +LAL LGA+ +N
Sbjct: 1 DRRLSYAEFNAWANRYAHALRAL-GVKKGDVVALLMENRPEYLLAWLALAKLGAVAALIN 59
Query: 125 PLLSVSEIKKQVTLCKTK---ISLAFTIY 150
+ + + + + AF IY
Sbjct: 60 TTQRGEVLAHCINVSDARAVIVDPAFYIY 88
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 560 | |||
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 100.0 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 100.0 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.97 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.97 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.93 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.88 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.82 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.81 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.37 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 99.33 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.77 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 98.53 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 98.33 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 98.16 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 97.24 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 93.02 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 81.12 |
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-85 Score=660.12 Aligned_cols=491 Identities=42% Similarity=0.647 Sum_probs=433.8
Q ss_pred ceEEEECC-CCceecHHHHHHHHHHHHHHHHHhhC--CCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHH
Q 037622 56 RTALVDSL-SGYSISYPQLFPLVQSVASGLRHHFG--ISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEI 132 (560)
Q Consensus 56 ~~a~~~~~-~~~~~Ty~el~~~v~~la~~L~~~~g--~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l 132 (560)
.+.++... +|+.+||+|+..++.++|..|.+ +| +++||+|++++||+++++.+++||+++|+++.+++|.+.+.++
T Consensus 33 ~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~-~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei 111 (537)
T KOG1176|consen 33 NTSLVYQDSDGRELTYSELHDRCRRLASALSE-LGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEI 111 (537)
T ss_pred cceEEEecCCCcEEcHHHHHHHHHHHHHHHHh-cCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHH
Confidence 35666543 26999999999999999999998 66 8899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEEeeccchHHhhhcCC---CCEEEecCCCccc-cc-CCCccc-HHHhhcccCCCCCCCCCCCCCEEE
Q 037622 133 KKQVTLCKTKISLAFTIYENVDKLRSWGT---TPVVAVPENLVND-FK-EGRFSD-FHKLIAGKFDLVERPVIRQQDTAA 206 (560)
Q Consensus 133 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~---~~vi~~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~ 206 (560)
.+.++.+++ ++++++....+++..... ..++++....... .. ...... +........+.. ......+|++.
T Consensus 112 ~~~~~~s~~--kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dd~~~ 188 (537)
T KOG1176|consen 112 AKQLKDSKP--KLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLPDG-IRPVSEDDTAA 188 (537)
T ss_pred HHHHHhcCC--eEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCCcc-cccCCCCCeEE
Confidence 999999999 999999998888755442 4556655431000 00 001111 333322222222 45567799999
Q ss_pred EEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHH
Q 037622 207 ILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEAS 286 (560)
Q Consensus 207 i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~ 286 (560)
++|||||||.||||++||+++..+...... ...+...++.++.+|++|.+|+...+...+..|++++....+++.
T Consensus 189 il~SSGTTg~PKgV~lsHr~~~~~~~~~~~-----~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~ 263 (537)
T KOG1176|consen 189 ILYSSGTTGLPKGVVLSHRNLIANTLSIKI-----GWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAE 263 (537)
T ss_pred EecCCCCCCCCceEEEecHHHHHHHHHhhh-----cccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHH
Confidence 999999999999999999999988766554 345666999999999999999986666688888888888889999
Q ss_pred HHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccc
Q 037622 287 EMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGT 366 (560)
Q Consensus 287 ~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 366 (560)
.+++.+++|++|++.++|..+..|++. +.....+++++|.+.+||+++++++.+++.+.+|...+.+.||+||+++.++
T Consensus 264 ~~~~~i~kykvt~~~~vP~~~~~l~~~-p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~ 342 (537)
T KOG1176|consen 264 LFLDLIEKYKVTHLFLVPPVLNMLAKS-PIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLIT 342 (537)
T ss_pred HHHHHHHHhCEEEEEcChHHHHHHhcC-CccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCcee
Confidence 999999999999999999999999987 4667789999999999999999999999999997799999999999998887
Q ss_pred cCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEcc
Q 037622 367 RGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDE 446 (560)
Q Consensus 367 ~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~ 446 (560)
.+...+. .+++++|+++++++..+.+ ++|+.+++++.||||++|++++.||++||++|++.|+++|||+|||+|++|+
T Consensus 343 ~~~~~~e-~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~ 420 (537)
T KOG1176|consen 343 SNDWGPE-RKPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDE 420 (537)
T ss_pred ecCCCcc-CcccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcC
Confidence 7765554 6899999999988888888 8999999999999999999999999999999999998889999999999999
Q ss_pred CCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCC
Q 037622 447 DGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAP 526 (560)
Q Consensus 447 ~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~ 526 (560)
||+|++.+|++|+||.+|++|+|.|||++|.+||.|.||+|++.+|+..|+.++|+|+.+++...+++++.++|+++|++
T Consensus 421 DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~k~l~~ 500 (537)
T KOG1176|consen 421 DGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVRKKLPA 500 (537)
T ss_pred CCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHHHHHHhhCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 527 YKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 527 ~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
|+.|+.++|+++||+|++|||+|+.||+.+.+
T Consensus 501 y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~ 532 (537)
T KOG1176|consen 501 YKLPGGVVFVDELPKTPNGKILRRKLRDIAKK 532 (537)
T ss_pred hhccCeEEEeccCCCCCcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999875
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-82 Score=597.39 Aligned_cols=505 Identities=26% Similarity=0.369 Sum_probs=444.6
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
-|+++.+....+ +++.|.+....+.++||+|+.+.++.+|.+|.. +|+++||||++..||+.+|+.++|||.++|.+
T Consensus 50 ~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~-lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v 128 (596)
T KOG1177|consen 50 ETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLS-LGLKKGDRVGVWGPNSYEWVLCQLACARAGLV 128 (596)
T ss_pred ccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHh-hcCCCCCEEEEecCChHHHHHHHHHHHHhceE
Confidence 799999888776 478888876667789999999999999999999 99999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccc-----hHHhhhcCC------------------CCEEEecCCCccccc
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYEN-----VDKLRSWGT------------------TPVVAVPENLVNDFK 176 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~-----~~~~~~~~~------------------~~vi~~~~~~~~~~~ 176 (560)
.++++|.+...+++..|++.++ ++++..... ++.+.++.. ..++..++. ..
T Consensus 129 ~v~~NP~Yq~~elr~~L~k~~~--k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed----~~ 202 (596)
T KOG1177|consen 129 LVNLNPAYQSEELRYVLKKVGC--KALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADED----HP 202 (596)
T ss_pred EeccCcccccHHHHHHHhhcCe--EEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCC----Cc
Confidence 9999999999999999999999 988876542 222222211 234444421 12
Q ss_pred CCCcccHHHhhcccCCC------CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcE
Q 037622 177 EGRFSDFHKLIAGKFDL------VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAV 250 (560)
Q Consensus 177 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (560)
..+...+.+++...... .......|+|++.|.|||||||.|||+.+||.+++++...... ..++.+.++
T Consensus 203 ~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~-----r~g~~e~~~ 277 (596)
T KOG1177|consen 203 LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGA-----RAGYNEKHR 277 (596)
T ss_pred CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHH-----HhCcCcceE
Confidence 44455566665543221 1123457899999999999999999999999999998887766 577888899
Q ss_pred EEEecChhhHHhHHHHHHHHhhCCCEEEEeC-CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceee
Q 037622 251 FLAVLPMFHIYGLSLFALGLLSLGPSVVVMR-RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVS 329 (560)
Q Consensus 251 ~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~ 329 (560)
++...|++|.+|.....+++++.|+++|++. .|++.+.++.++++++|.++++|+++..|++. +.....+++++|..+
T Consensus 278 i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~-~~~~~~~~s~lr~~v 356 (596)
T KOG1177|consen 278 ICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNI-PQKQQVDLSSLRKGV 356 (596)
T ss_pred EEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcc-hhhccCchhhhhhhe
Confidence 9999999999998889999999999999965 69999999999999999999999999999987 777888999999999
Q ss_pred cccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCC-CCcccccccccCCeEEEEEeCCCCccCCCCCcceE
Q 037622 330 SGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKK-FSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGEL 408 (560)
Q Consensus 330 ~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~-~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel 408 (560)
.||+++|+++.+.+.+...-..+...||+||+++..+.....+. .....++|..+++.+..++| ..|..++.|..|||
T Consensus 357 igGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~~Gel 435 (596)
T KOG1177|consen 357 IGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGTKGEL 435 (596)
T ss_pred eCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccCCCceE
Confidence 99999999999999987643458889999999988776654443 34567899999999999999 88999999999999
Q ss_pred EEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEE
Q 037622 409 WLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVT 488 (560)
Q Consensus 409 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~ 488 (560)
+++|.+.+.|||++++.|.+....+.||+|||+|.+|++|.++++||.+|+|+.+|++|+|.|||+.|.+||.|.++.|+
T Consensus 436 ~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VV 515 (596)
T KOG1177|consen 436 LIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVV 515 (596)
T ss_pred EEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCceEEEEEEecCCCC--CCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhccC
Q 037622 489 GAMDKVLGEIPVAFVVRRDGST--LTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 489 ~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~ 560 (560)
+++|+..|+.++|+|.+..+.. .+.++|.++|+.++..|++|++|+++++||+|.+|||+|-++|++++.++
T Consensus 516 GV~D~R~GE~VCA~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFeir~~~k~~l 589 (596)
T KOG1177|consen 516 GVPDERLGEEVCACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFEIREMSKGHL 589 (596)
T ss_pred ccCCCcccceEEEEEEeeccccccccHHHHHHHHhcccccccCCcEEEEeccCcccccccchhHHHHHHHHhhc
Confidence 9999999999999999987755 48899999999999999999999999999999999999999999988653
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-81 Score=626.24 Aligned_cols=486 Identities=29% Similarity=0.393 Sum_probs=421.3
Q ss_pred HhccCCCCceEEEECCC---CceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccC
Q 037622 48 IFSHKHNGRTALVDSLS---GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMN 124 (560)
Q Consensus 48 ~~~~~~~~~~a~~~~~~---~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~ 124 (560)
.....++++.|++...+ .+++||+||.+.++++|+.|++..|+ +||||+|++|+.+++++++|||+++||+.+|+.
T Consensus 18 ~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~~~vf 96 (528)
T COG0365 18 HLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIPAVVS 96 (528)
T ss_pred hhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEEeecc
Confidence 33333456888885422 27899999999999999999874678 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC--------CCEEEecCCCcccccCCCcccHHHhhcccCCCCCC
Q 037622 125 PLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT--------TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVER 196 (560)
Q Consensus 125 ~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~--------~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (560)
+.++++.++.+++.+++ +++++.+....+...... ..++++.... ..+.+...........
T Consensus 97 ~~f~~~al~~Ri~d~~~--k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~---------~~~~~~~~~~~~~~~~ 165 (528)
T COG0365 97 PGLSAEAVADRIADLGP--KVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG---------LWYDEAVEKASEKFEF 165 (528)
T ss_pred cCCCHHHHHHHHHccCC--CEEEEecccccccccccchhHHHHhhcceEEecccc---------ccHHHHhhccCCCCCc
Confidence 99999999999999999 999988876554432221 1133333211 5677777666655555
Q ss_pred CCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCE
Q 037622 197 PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPS 276 (560)
Q Consensus 197 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~ 276 (560)
...+.+|+++++|||||||+||+|+++|..++........+ .+.+.++|++++..++.|++|..+.++.+|..|++
T Consensus 166 ~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~----~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat 241 (528)
T COG0365 166 EPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKF----HGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGAT 241 (528)
T ss_pred cccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHH----hhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCe
Confidence 56889999999999999999999999999888777666543 35667999999999999999999999999999999
Q ss_pred EEEeCC--c-CHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeee
Q 037622 277 VVVMRR--F-EASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFI 353 (560)
Q Consensus 277 ~v~~~~--~-~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~ 353 (560)
.++.+. + +++.+++.++++++|.++++|+.++.|.+... ..+.++++||.+.+.|||++++.++++.+.+ +++|.
T Consensus 242 ~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~-~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~-g~~i~ 319 (528)
T COG0365 242 TVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL-GEPYDLSSLRVLGSAGEPLNPEAFEWFYSAL-GVWIL 319 (528)
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC-cccccchhheeeeccCCCCCHHHHHHHHHHh-CCCEe
Confidence 999863 3 48999999999999999999999999998733 5678899999999999999999999999999 89999
Q ss_pred cccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecc--cchhhhcCCchhhhhccC
Q 037622 354 QGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP--GTMKEYINNADATMSTID 431 (560)
Q Consensus 354 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~--~~~~gy~~~~~~~~~~~~ 431 (560)
+.||+||+|.+...... ..+.++.|+|+||+++.++|++ |++++.|+ |+|+++.| +++++||+||+.+.+.+-
T Consensus 320 d~~gqTEtg~~~~~~~~---~~~~g~~g~p~pG~~~~vvdd~-g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~ 394 (528)
T COG0365 320 DIYGQTETGMGFIAGRP---PVKNGSSGLPLPGYAVRRVDDE-GNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYF 394 (528)
T ss_pred ccccccccCccccCCCC---CcCCCCCCCCCCCceeEEECCC-CCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHh
Confidence 99999999955444333 3355666999999999999955 99999999 99999986 999999999999988874
Q ss_pred CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCC
Q 037622 432 KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTL 511 (560)
Q Consensus 432 ~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 511 (560)
+. ||.|||.+++|+||+++|+||.||+||.+|++|.+.|||++|.+||.|.||+|++.+|+..|+.+++||+++++...
T Consensus 395 ~~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~ 473 (528)
T COG0365 395 GR-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEP 473 (528)
T ss_pred hc-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCCh
Confidence 44 99999999999999999999999999999999999999999999999999999999999999999999999887543
Q ss_pred C--HHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHh
Q 037622 512 T--EAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLT 557 (560)
Q Consensus 512 ~--~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~ 557 (560)
+ .++|++++++.+.+++.|+.|+++++||+|.||||.|+.||+.+.
T Consensus 474 ~~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~ 521 (528)
T COG0365 474 NELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILH 521 (528)
T ss_pred HHHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHh
Confidence 3 467888888888889999999999999999999999999999876
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-76 Score=629.03 Aligned_cols=543 Identities=70% Similarity=1.122 Sum_probs=451.2
Q ss_pred CCCCCCCCCCCceeccCCCCCCCCCCCCCCCHHHHHh-ccCCCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCC
Q 037622 13 INTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIF-SHKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGIS 91 (560)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~ 91 (560)
.++-+|+++.++++.++.++.++|. +..+++.+.++ ++..++++|+++...+.++||+||.++++++|++|.+++|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~ 90 (560)
T PLN02574 12 NNPPFWYSPETGIYSSKHPPVPLPS-DPNLDAVSFIFSHHNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVR 90 (560)
T ss_pred CCCccccCcCCeeecCCCCCCCCCC-CCCCCHHHHHhcCcccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Confidence 3456699999999988766555543 22345544444 444566999998755668999999999999999998735999
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCC
Q 037622 92 QGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENL 171 (560)
Q Consensus 92 ~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~ 171 (560)
+||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.+++ ++++++.+....+.... ..++.+....
T Consensus 91 ~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 167 (560)
T PLN02574 91 QGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSV--GLAFTSPENVEKLSPLG-VPVIGVPENY 167 (560)
T ss_pred CCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCC--EEEEECHHHHHHHHhcC-CcEEecCccc
Confidence 99999999999999999999999999999999999999999999999999 99998887666554432 3333332211
Q ss_pred cccccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEE
Q 037622 172 VNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVF 251 (560)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (560)
...........+.++..............++++++++|||||||.||+|+++|+++...+..+..............+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (560)
T PLN02574 168 DFDSKRIEFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVY 247 (560)
T ss_pred ccccCccCcccHHHHhhcCCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEE
Confidence 00000112234444443332222233456789999999999999999999999999887776653221112233467889
Q ss_pred EEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecc
Q 037622 252 LAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSG 331 (560)
Q Consensus 252 ~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~ 331 (560)
+..+|++|.+|+...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+........+++++|.+++|
T Consensus 248 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~g 327 (560)
T PLN02574 248 LAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCG 327 (560)
T ss_pred EEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEe
Confidence 99999999999977778888999999999999999999999999999999999999999876322234567899999999
Q ss_pred cCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEe
Q 037622 332 AAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLR 411 (560)
Q Consensus 332 g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~ 411 (560)
|+++++++.+++.+.++++++++.||+||++.+++...........+++|.|+|+++++|+|++++++++.|+.|||+|+
T Consensus 328 g~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~ 407 (560)
T PLN02574 328 AAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQ 407 (560)
T ss_pred cccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEE
Confidence 99999999999999998899999999999987655433222234567999999999999999888999999999999999
Q ss_pred cccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEccc
Q 037622 412 GPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAM 491 (560)
Q Consensus 412 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~ 491 (560)
|++++.||+++++.+.+.|+.+|||+|||+|+++++|.+++.||.+|+||++|++|++.|||++|.+||+|.+++|++.+
T Consensus 408 g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~ 487 (560)
T PLN02574 408 GPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVP 487 (560)
T ss_pred CcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccc
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 492 DKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 492 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
++..++.++++|+..++...+.+++.++++++|++++.|+.++++++||+|++||++|+.|++.+.+.
T Consensus 488 ~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~~ 555 (560)
T PLN02574 488 DKECGEIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNS 555 (560)
T ss_pred cCCCCcceEEEEEeCCCCCCCHHHHHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhhc
Confidence 98888999999998877777889999999999999999999999999999999999999999998753
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-77 Score=625.97 Aligned_cols=503 Identities=36% Similarity=0.549 Sum_probs=429.2
Q ss_pred CCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 41 LLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 41 ~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
..++.+++.+.++ ++++|+++.....++||+||.++++++|.+|.+ .|+++||+|+|+++|++++++++|||+++|+
T Consensus 10 ~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-~~v~~gdrVail~~N~~e~~~~~~a~~~~Ga 88 (534)
T COG0318 10 ELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQA-LGVKPGDRVAILLPNSPEFLIAFLAALRAGA 88 (534)
T ss_pred cccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHhcCE
Confidence 3788888888776 459999987322349999999999999999999 7999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC----CCEEEecCCCcccccCCCc-ccHHHhhcccCCC
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT----TPVVAVPENLVNDFKEGRF-SDFHKLIAGKFDL 193 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~----~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 193 (560)
+++|++|.++..++.++++.+++ +.++++............ ...+...... .... ..+.+........
T Consensus 89 v~vpln~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 161 (534)
T COG0318 89 VAVPLNPRLTPRELAYILNDAGA--KVLITSAEFAALLEAVAEALPVVLVVLLVGDA-----DDRLPITLEALAAEGPGP 161 (534)
T ss_pred EEeecCcccCHHHHHHHHHhcCC--eEEEEcccchhHHHHHhccCCcceEEEecccc-----cccccccHHHHhhccCCc
Confidence 99999999999999999999999 999988773333322221 1111111110 0000 2344443322211
Q ss_pred -CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhccccc--CCCCcEEEEecChhhHHhHHHHHHHH
Q 037622 194 -VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY--LSSEAVFLAVLPMFHIYGLSLFALGL 270 (560)
Q Consensus 194 -~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~g~~~~~~~~ 270 (560)
......+++++++++|||||||.||+|++||+++..+...+.. ... ++..|++++++|++|.+|+...+..+
T Consensus 162 ~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~-----~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~ 236 (534)
T COG0318 162 DADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAA-----ALGGGLTPDDVVLSWLPLFHIFGLIVGLLAP 236 (534)
T ss_pred ccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHH-----HhcccCCCCceEEEecChHHHHHHHHHHHHH
Confidence 1122267899999999999999999999999999998887766 345 88999999999999999998778888
Q ss_pred hhCCCEEEEeC--CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCc-cceeecccCCCCHHHHHHHHHhC
Q 037622 271 LSLGPSVVVMR--RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKS-LKQVSSGAAPANSKIIEDFVGAF 347 (560)
Q Consensus 271 l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~-lr~~~~~g~~~~~~~~~~~~~~~ 347 (560)
+..|+++++.+ .+++..++..+.++++|++.++|+++..+++. ......++.+ +|.++.||+++++++++++.+.|
T Consensus 237 ~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~-~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~ 315 (534)
T COG0318 237 LLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDN-PEKDDDDLSSSLRLVLSGGAPLPPELLERFEERF 315 (534)
T ss_pred HHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhC-CccCccccccceEEEEecCCcCCHHHHHHHHHHh
Confidence 99999999998 59999999999999999999999999998877 4444445555 99999999999999999999999
Q ss_pred CCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhh
Q 037622 348 PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATM 427 (560)
Q Consensus 348 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~ 427 (560)
+..++.+.||+||+++.++.........+.+++|.|+|+++++|+|++++.++| |+.|||+++||+++.||+++|+.|.
T Consensus 316 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~ 394 (534)
T COG0318 316 GPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATA 394 (534)
T ss_pred CCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHH
Confidence 657899999999999877765443301356777999999999999977776667 9999999999999999999999999
Q ss_pred hccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecC
Q 037622 428 STIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD 507 (560)
Q Consensus 428 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 507 (560)
..|+.+|||+|||+|++|++|++++.||.+|+|+.+|++|+|.|||+++.+||.|.+++|++.+++..|+.++++++..+
T Consensus 395 ~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~ 474 (534)
T COG0318 395 EAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKP 474 (534)
T ss_pred HhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcC
Confidence 98866799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C--CCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 508 G--STLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 508 ~--~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
+ ...+.+++.++|+++++.+++|+.++++++||+|++||++|+.|++++..
T Consensus 475 ~~~~~~~~~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 475 GGDAELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred CCCCCCCHHHHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 6 34588999999999999999999999999999999999999999998764
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-76 Score=630.74 Aligned_cols=542 Identities=21% Similarity=0.301 Sum_probs=431.6
Q ss_pred hhhhhhccCCCCCCCCCCCCCCceeccCCCCCCCCCCCCCCCHHHHH-hccC----CCCceEEEECC----CCceecHHH
Q 037622 2 EKFLQTFSSERINTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFI-FSHK----HNGRTALVDSL----SGYSISYPQ 72 (560)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~a~~~~~----~~~~~Ty~e 72 (560)
+.||.+.+.+. ..|.++..++++...+...|.. +..+|....+ .+++ +++++|++... ..+++||+|
T Consensus 22 ~~fw~~~~~~~---~~~~~~~~~~~~~~~~~~~wf~-~~~~n~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~e 97 (647)
T PTZ00237 22 ESFWDEVAKKY---VHWDKMYDKVYSGDEIYPDWFK-GGELNTCYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQ 97 (647)
T ss_pred HHHHHHHHHhc---CeeeCCcccccCCCCCchhhCC-CCeeeHHHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHH
Confidence 57888888775 4899998888865434456776 5556665544 4443 35689988631 136899999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccc
Q 037622 73 LFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYEN 152 (560)
Q Consensus 73 l~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~ 152 (560)
|.++++++|..|.+ +|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.+++ +++++++..
T Consensus 98 L~~~v~~lA~~L~~-~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~--~~li~~~~~ 174 (647)
T PTZ00237 98 LYEKVCEFSRVLLN-LNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITP--KLIITTNYG 174 (647)
T ss_pred HHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCC--CEEEEcccc
Confidence 99999999999999 899999999999999999999999999999999999999999999999999999 989886521
Q ss_pred ---------hHHhhh---cC---CCCEEEecCCCc---c------cc-cCCCcccHHHhhccc-----CCCCCCCCCCCC
Q 037622 153 ---------VDKLRS---WG---TTPVVAVPENLV---N------DF-KEGRFSDFHKLIAGK-----FDLVERPVIRQQ 202 (560)
Q Consensus 153 ---------~~~~~~---~~---~~~vi~~~~~~~---~------~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 202 (560)
.+.+.+ .. ...++.+..... . .. ..+....+++++... ..........++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (647)
T PTZ00237 175 ILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESS 254 (647)
T ss_pred eeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCC
Confidence 111111 11 123443321100 0 00 011223455544321 111122345678
Q ss_pred CEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC
Q 037622 203 DTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR 282 (560)
Q Consensus 203 ~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 282 (560)
++++|+|||||||.||||+++|.+.+......... ......++++++..|++|+.+. ..++.++..|+++++.+.
T Consensus 255 d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~----~~~~~~~d~~~~~~~~~w~~~~-~~~~~~l~~G~t~v~~~~ 329 (647)
T PTZ00237 255 HPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRS----IIEKDIPTVVFSHSSIGWVSFH-GFLYGSLSLGNTFVMFEG 329 (647)
T ss_pred CcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHH----hcCCCCCcEEEEcCCCceEeeH-HHHHHHHhCCcEEEEeCC
Confidence 99999999999999999999999844333222111 3456678999999999998765 368889999999998764
Q ss_pred --cC----HHHHHHHHHHhCcceeccCcHHHHHHHHhhhc----cCCCCCCccceeecccCCCCHHHHHHHHHhCCCCee
Q 037622 283 --FE----ASEMLKVIDKYGVTHFPVVPPILMALTKAAKG----LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDF 352 (560)
Q Consensus 283 --~~----~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~----~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i 352 (560)
+. +..+++.++++++|++.++|++++.|.+.... ....++++||.+++||+++++++.+++.+.+ ++++
T Consensus 330 ~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~-g~~i 408 (647)
T PTZ00237 330 GIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKL-KIKS 408 (647)
T ss_pred CCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCHHHHHHHHHhc-CCCE
Confidence 12 68899999999999999999999999875222 1345688999999999999999999999988 7999
Q ss_pred ecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecc---cchhhhcCCchhhhhc
Q 037622 353 IQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP---GTMKEYINNADATMST 429 (560)
Q Consensus 353 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~ 429 (560)
++.||+||+++..+.... ......+++|+|+||++++|+| +++++++.|+.|||++++| +++.|||++++.+...
T Consensus 409 ~~~yG~TE~~~~~~~~~~-~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~ 486 (647)
T PTZ00237 409 SRGYGQTEIGITYLYCYG-HINIPYNATGVPSIFIKPSILS-EDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQL 486 (647)
T ss_pred EeeechHHhChhhhccCC-CCCCCCCCCccCcCCceEEEEC-CCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHH
Confidence 999999999876543322 1223458899999999999999 5899999999999999986 7899999999999887
Q ss_pred cCC-CCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCC
Q 037622 430 IDK-EGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDG 508 (560)
Q Consensus 430 ~~~-~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 508 (560)
|+. +|||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.+||.|.+++|++.+++..|+.++++|++.++
T Consensus 487 f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~ 566 (647)
T PTZ00237 487 FSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQD 566 (647)
T ss_pred HhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccC
Confidence 754 7899999999999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred ---CCCCH----HHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 509 ---STLTE----AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 509 ---~~~~~----~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
...+. ++++++++++|++++.|+.|+++++||+|++||++|+.|++.+..
T Consensus 567 ~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~ 623 (647)
T PTZ00237 567 QSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLND 623 (647)
T ss_pred ccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcC
Confidence 22332 567888999999999999999999999999999999999998754
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-75 Score=630.73 Aligned_cols=543 Identities=22% Similarity=0.315 Sum_probs=434.2
Q ss_pred hhhhhhccCCCCCCCCCCCCCC--ceecc------CCCCCCCCCCCCCCCHHH-HHhccC---CCCceEEEECC----CC
Q 037622 2 EKFLQTFSSERINTSQWYSPET--GIYHS------KHPSVNLPANDSLLDVDS-FIFSHK---HNGRTALVDSL----SG 65 (560)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~a~~~~~----~~ 65 (560)
|.||++++.+. .|..++. ++... ..+...|.. +..+|+.. .+.+++ +++++|++... ..
T Consensus 44 ~~fw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~wf~-g~~~N~~~~~l~~~~~~~~~~~~Al~~~~~~~~~~ 118 (666)
T PLN02654 44 AGFWSDIASQF----YWKQKWEGDEVCSENLDVRKGPISIEWFK-GGKTNICYNCLDRNVEAGNGDKIAIYWEGNEPGFD 118 (666)
T ss_pred HHHHHHHHHhC----CeecCCCcceEeccCCCcccCCccccccC-CCEeeHHHHHHHHhhccCCCCCEEEEEEcCCCCce
Confidence 46777776543 4777753 44422 113456766 56678744 444443 35699998621 23
Q ss_pred ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEE
Q 037622 66 YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISL 145 (560)
Q Consensus 66 ~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~ 145 (560)
+++||+||.++++++|++|++ +|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++..+++.+++ ++
T Consensus 119 ~~~Ty~eL~~~v~~lA~~L~~-~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~--~~ 195 (666)
T PLN02654 119 ASLTYSELLDRVCQLANYLKD-VGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKP--KV 195 (666)
T ss_pred EEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCc--eE
Confidence 689999999999999999999 899999999999999999999999999999999999999999999999999999 99
Q ss_pred EEeeccchHH---------hh---hcC-----C-CCEEEecCCCc-----ccccCCCcccHHHhhcccCCCCCCCCCCCC
Q 037622 146 AFTIYENVDK---------LR---SWG-----T-TPVVAVPENLV-----NDFKEGRFSDFHKLIAGKFDLVERPVIRQQ 202 (560)
Q Consensus 146 v~~~~~~~~~---------~~---~~~-----~-~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (560)
+++++..... +. ... . ..++....... ..........++++....+.........++
T Consensus 196 li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (666)
T PLN02654 196 VITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAE 275 (666)
T ss_pred EEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccccCCcccHHHHhhcCCCCCCceecCCC
Confidence 9987653211 10 000 0 01111111100 000000112234443322222222335679
Q ss_pred CEEEEEcCCCCCCCchhhhhhhHHHHHHH-HHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeC
Q 037622 203 DTAAILYSSGTTGASKGAELTHGNFIAAV-ELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMR 281 (560)
Q Consensus 203 ~~a~i~~TSGTTG~PK~v~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 281 (560)
|+++|+|||||||.||||+++|.+++... ..... ..+++++|++++..|++|+.|....++.+|..|+++++++
T Consensus 276 d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~ 350 (666)
T PLN02654 276 DPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKY-----AFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFE 350 (666)
T ss_pred CceEEEecCCCCCCCceEEecccHHHHHHHHHHHH-----hcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEEC
Confidence 99999999999999999999999986543 33332 4678899999999999999998778899999999999987
Q ss_pred C----cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCCC--Ceeec
Q 037622 282 R----FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPH--VDFIQ 354 (560)
Q Consensus 282 ~----~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~--~~i~~ 354 (560)
+ +++..+++.++++++|+++++|++++.|.+.... ....++++||.++++||++++++++++.+.++. +++.+
T Consensus 351 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~ 430 (666)
T PLN02654 351 GAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISD 430 (666)
T ss_pred CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceec
Confidence 4 5799999999999999999999999999875221 234567899999999999999999999999842 78999
Q ss_pred ccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEec--ccchhhhcCCchhhhhccC-
Q 037622 355 GYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG--PGTMKEYINNADATMSTID- 431 (560)
Q Consensus 355 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~- 431 (560)
.||+||+++............+++++|+|+||++++|+| +++++++.++.|||++++ |+++.||+++++.+...+.
T Consensus 431 ~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~ 509 (666)
T PLN02654 431 TWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFK 509 (666)
T ss_pred cccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhh
Confidence 999999987655433222234678999999999999999 678889888899999999 7899999999998876542
Q ss_pred -CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCC
Q 037622 432 -KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGST 510 (560)
Q Consensus 432 -~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 510 (560)
.+|||+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+||.|.+++|++.+++..|+.++++|++.++..
T Consensus 510 ~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~ 589 (666)
T PLN02654 510 PFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVP 589 (666)
T ss_pred cCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCC
Confidence 2789999999999999999999999999999999999999999999999999999999999999999999999988755
Q ss_pred CCH---HHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 511 LTE---AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 511 ~~~---~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
.+. ++|+++++++|+++++|+.|+++++||+|++||++|+.|++.+..
T Consensus 590 ~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~ 640 (666)
T PLN02654 590 YSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 640 (666)
T ss_pred CCHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcC
Confidence 443 478899999999999999999999999999999999999998765
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-74 Score=620.31 Aligned_cols=543 Identities=23% Similarity=0.308 Sum_probs=436.1
Q ss_pred hhhhhhccCCCCCCCCCCCCCCceecc-CCCCCCCCCCCCCCCHH-HHHhccC--CCCceEEEECC----CCceecHHHH
Q 037622 2 EKFLQTFSSERINTSQWYSPETGIYHS-KHPSVNLPANDSLLDVD-SFIFSHK--HNGRTALVDSL----SGYSISYPQL 73 (560)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~a~~~~~----~~~~~Ty~el 73 (560)
+.||++.... ..|+++..+++.. ..+...|.. +..+|+. +.+.+++ +++++|+++.. +.+++||+||
T Consensus 15 ~~fw~~~~~~----~~~~~~~~~~~~~~~~~~~~wf~-~~~~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL 89 (628)
T TIGR02316 15 EAFWAEQARR----IDWQTPPQRILDYSNPPFARWFA-GGRTNLCHNALDRHLDERGEQLALVTVSSETGQERTLTYRQL 89 (628)
T ss_pred HHHHHHHHHh----CCeecCCcccccCCCCCcCccCC-CCEeeHHHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHH
Confidence 4677776664 5799999888753 233445665 5556664 4454443 46699998621 2478999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccch
Q 037622 74 FPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENV 153 (560)
Q Consensus 74 ~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~ 153 (560)
+++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.+++ +++++++...
T Consensus 90 ~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~--~~li~~~~~~ 166 (628)
T TIGR02316 90 HREVNVFASALRA-LGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATP--KLIVSADAGM 166 (628)
T ss_pred HHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCc--eEEEECCccc
Confidence 9999999999999 899999999999999999999999999999999999999999999999999999 9999876421
Q ss_pred ---------HHhh---h-c--CCCCEEEecCCCcc-cccCCCcccHHHhhcccCC-CCCCCCCCCCCEEEEEcCCCCCCC
Q 037622 154 ---------DKLR---S-W--GTTPVVAVPENLVN-DFKEGRFSDFHKLIAGKFD-LVERPVIRQQDTAAILYSSGTTGA 216 (560)
Q Consensus 154 ---------~~~~---~-~--~~~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~ 216 (560)
..+. . . ....++.++..... .........+.++...... ........++++++|+|||||||.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~ 246 (628)
T TIGR02316 167 RGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGK 246 (628)
T ss_pred cCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCC
Confidence 1111 1 1 11345555432110 0001122345554433211 112223467899999999999999
Q ss_pred chhhhhhhHHHHHHHH-HHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC----cCHHHHHHH
Q 037622 217 SKGAELTHGNFIAAVE-LFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR----FEASEMLKV 291 (560)
Q Consensus 217 PK~v~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~ 291 (560)
||||+++|.++..... .... ...++++|++++..|+.|+.+....++.+|..|+++++.+. +++..+++.
T Consensus 247 PKgV~~sh~~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~ 321 (628)
T TIGR02316 247 PKGVQRDVGGYAVALALSMWA-----IFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSI 321 (628)
T ss_pred CceEEECCcHHHHHHHHHHHH-----hcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHH
Confidence 9999999999864433 2222 45678899999999999999987788999999999999873 478999999
Q ss_pred HHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCC
Q 037622 292 IDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFN 370 (560)
Q Consensus 292 l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~ 370 (560)
++++++|+++++|++++.|.+.... ....++++||.+++||+++++++.+++.+.+ +..+++.||+||++..++....
T Consensus 322 i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~-~~~~~~~yG~TE~~~~~~~~~~ 400 (628)
T TIGR02316 322 VERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGL-GKPVIDNYWQTETGWPVLAIMP 400 (628)
T ss_pred HHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHh-CCCEEecccccccCceeecCCC
Confidence 9999999999999999998764211 2345688999999999999999999999988 7899999999999854433221
Q ss_pred C--CCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecc---cchhhhcCCchhhhhcc---CCCCceecCceE
Q 037622 371 T--KKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP---GTMKEYINNADATMSTI---DKEGWLHTGDIA 442 (560)
Q Consensus 371 ~--~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~---~~~~~~~TGD~~ 442 (560)
. ......+++|+|+||++++|+|++++++++.|+.|||+++|| +.+.||+++++.+...+ ..++||+|||+|
T Consensus 401 ~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g 480 (628)
T TIGR02316 401 GLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWG 480 (628)
T ss_pred CCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceE
Confidence 1 112356889999999999999976899999999999999998 57899999998776653 246799999999
Q ss_pred EEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCC--------CCHH
Q 037622 443 YFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGST--------LTEA 514 (560)
Q Consensus 443 ~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~~~~ 514 (560)
++|+||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.++++|++.++.. ...+
T Consensus 481 ~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~ 560 (628)
T TIGR02316 481 IRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVET 560 (628)
T ss_pred EEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876533 2346
Q ss_pred HHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 515 AVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 515 ~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
+|+++++++|++|++|+.|+++++||+|++||++|+.|++.+..
T Consensus 561 ~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~ 604 (628)
T TIGR02316 561 GMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEG 604 (628)
T ss_pred HHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999988753
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-74 Score=620.57 Aligned_cols=546 Identities=24% Similarity=0.351 Sum_probs=442.0
Q ss_pred hhhhhhccCCCCCCCCCCCCCCceeccC-CCCCCCCCCCCCCCHHHHHh-ccC--CCCceEEEECC----CCceecHHHH
Q 037622 2 EKFLQTFSSERINTSQWYSPETGIYHSK-HPSVNLPANDSLLDVDSFIF-SHK--HNGRTALVDSL----SGYSISYPQL 73 (560)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~a~~~~~----~~~~~Ty~el 73 (560)
|.||++.+.+. ..|.+++.++.... .+...|.. +..+|+...+. +++ +++++|++... +.+++||+||
T Consensus 19 ~~fw~~~~~~~---~~~~~~~~~~~~~~~~~~~~wf~-~~~~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL 94 (625)
T TIGR02188 19 DKFWAKLAREL---LDWFKPFTKVLDWSFPPFYKWFV-GGELNVSYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYREL 94 (625)
T ss_pred HHHHHHHHHhc---CceecCCceeecCCCCCCCeeCC-CCEEEHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHH
Confidence 57888877652 56999988887532 34455665 55566655443 333 45699998532 1368999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccch
Q 037622 74 FPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENV 153 (560)
Q Consensus 74 ~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~ 153 (560)
.++++++|++|.+ +|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.+++ +++++++...
T Consensus 95 ~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~--~~li~~~~~~ 171 (625)
T TIGR02188 95 HREVCRFANVLKS-LGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGA--KLVITADEGL 171 (625)
T ss_pred HHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCC--CEEEEcCccc
Confidence 9999999999999 899999999999999999999999999999999999999999999999999999 9998876532
Q ss_pred ---------HHhh---h-cC-C-CCEEEecCCCcc-cccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCc
Q 037622 154 ---------DKLR---S-WG-T-TPVVAVPENLVN-DFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGAS 217 (560)
Q Consensus 154 ---------~~~~---~-~~-~-~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~P 217 (560)
..+. . .. . ..++.+...... .........++++..............++++++|+|||||||.|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~P 251 (625)
T TIGR02188 172 RGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKP 251 (625)
T ss_pred cCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCccccccccHHHHHhhcCCCCCceecCCCCceEEEecCCCCCCC
Confidence 1111 1 11 1 223433321100 00011123344544433222333355778999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC----cCHHHHHHHHH
Q 037622 218 KGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR----FEASEMLKVID 293 (560)
Q Consensus 218 K~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~ 293 (560)
|+|+++|.++.......... ..++.++|++++..|++|+.+....++.++..|+++++.+. .++..+++.++
T Consensus 252 KgV~~s~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~ 327 (625)
T TIGR02188 252 KGVLHTTGGYLLYAAMTMKY----VFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIE 327 (625)
T ss_pred CeEEECccHhHHHHHHHHHh----ccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHH
Confidence 99999999987554433321 35678899999999999999887788999999999998763 47999999999
Q ss_pred HhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCC--CCeeecccchhhcccccccCCC
Q 037622 294 KYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP--HVDFIQGYGMTESTAVGTRGFN 370 (560)
Q Consensus 294 ~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~ 370 (560)
++++|++.++|++++.|.+.... ....++++||.++++|+++++++++++.+.++ ++++++.||+||+++.++....
T Consensus 328 ~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~ 407 (625)
T TIGR02188 328 KHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLP 407 (625)
T ss_pred HhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCC
Confidence 99999999999999999875221 22356789999999999999999999999884 3789999999999877554433
Q ss_pred CCCCCcccccccccCCeEEEEEeCCCCccCC-CCCcceEEEec--ccchhhhcCCchhhhhccC--CCCceecCceEEEc
Q 037622 371 TKKFSKYFSVGLLAPNIQAKVVDWVNGCFLP-PGSTGELWLRG--PGTMKEYINNADATMSTID--KEGWLHTGDIAYFD 445 (560)
Q Consensus 371 ~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~-~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~ 445 (560)
.....+++++|+|+||++++++| +++++++ .|+.|||++++ |+++.||+++++.+...+. .+|||+|||+|++|
T Consensus 408 ~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d 486 (625)
T TIGR02188 408 GATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRD 486 (625)
T ss_pred CCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEc
Confidence 22234678999999999999999 7889998 99999999999 6899999999998876653 37899999999999
Q ss_pred cCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCC---HHHHHHHHHh
Q 037622 446 EDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLT---EAAVIDYLAQ 522 (560)
Q Consensus 446 ~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~ 522 (560)
+||.++++||.||+||++|++|+|.+||++|.++|.|.+++|++.+++..|+.++++|++.++...+ .+++++++++
T Consensus 487 ~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~ 566 (625)
T TIGR02188 487 KDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRK 566 (625)
T ss_pred CCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999988775544 3689999999
Q ss_pred ccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 523 RVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 523 ~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+|+++++|+.|+++++||+|++||++|+.|++.+..+
T Consensus 567 ~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~ 603 (625)
T TIGR02188 567 EIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE 603 (625)
T ss_pred hcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence 9999999999999999999999999999999987653
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-73 Score=615.98 Aligned_cols=545 Identities=25% Similarity=0.370 Sum_probs=439.4
Q ss_pred hhhhhhccCCCCCCCCCCCCCCceeccCCCCCCCCCCCCCCCHHHH-HhccC--CCCceEEEECC----CCceecHHHHH
Q 037622 2 EKFLQTFSSERINTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSF-IFSHK--HNGRTALVDSL----SGYSISYPQLF 74 (560)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~a~~~~~----~~~~~Ty~el~ 74 (560)
++||++++.. ..|.+++.++++...+...|.. +..+|+... +.+++ +++++|+++.. ..+++||+||+
T Consensus 31 ~~~w~~~~~~----~~~~~~~~~~~~~~~~~~~w~~-~~~~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~ 105 (637)
T PRK00174 31 EGFWAEQAKR----LDWFKPFDTVLDWNAPFIKWFE-DGELNVSYNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELH 105 (637)
T ss_pred HHHHHHHHHh----cCeecCCcccccCCCCCCccCC-CCEeEHHHHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHH
Confidence 4688877543 5688888888765445555654 445665443 43333 46799998532 23589999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchH
Q 037622 75 PLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVD 154 (560)
Q Consensus 75 ~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~ 154 (560)
++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++.+++ +++++++....
T Consensus 106 ~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~--~~li~~~~~~~ 182 (637)
T PRK00174 106 REVCRFANALKS-LGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGA--KLVITADEGVR 182 (637)
T ss_pred HHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCC--cEEEEcCcccc
Confidence 999999999999 899999999999999999999999999999999999999999999999999999 99988765321
Q ss_pred ---------Hhh----hcCC-CCEEEecCCCcc-cccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchh
Q 037622 155 ---------KLR----SWGT-TPVVAVPENLVN-DFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKG 219 (560)
Q Consensus 155 ---------~~~----~~~~-~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~ 219 (560)
.+. .... ..++.++..... .........++++..............++++++|+|||||||.||+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKg 262 (637)
T PRK00174 183 GGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDWVEGRDLWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKG 262 (637)
T ss_pred CCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCcCCCCcccHHHHHhhcCCCCCccccCCCCcEEEEECCCCCCCCce
Confidence 111 1111 223333321100 0001122334555443322223334567899999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC----cCHHHHHHHHHHh
Q 037622 220 AELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR----FEASEMLKVIDKY 295 (560)
Q Consensus 220 v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 295 (560)
|+++|.+++.+....... .+.+.++|++++..|++|+.+....++.++..|+++++.+. +++..+++.++++
T Consensus 263 V~~s~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~ 338 (637)
T PRK00174 263 VLHTTGGYLVYAAMTMKY----VFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKH 338 (637)
T ss_pred EEeCcchhHHHHHHHHHh----ccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhc
Confidence 999999987654433221 35678899999999999999987788999999999998763 4799999999999
Q ss_pred CcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCC--CCeeecccchhhcccccccCCCCC
Q 037622 296 GVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP--HVDFIQGYGMTESTAVGTRGFNTK 372 (560)
Q Consensus 296 ~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~ 372 (560)
++|++.++|++++.|++.... ....++++||.++++|+++++++.+++.+.++ ++++++.||+||++..++......
T Consensus 339 ~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~ 418 (637)
T PRK00174 339 KVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGA 418 (637)
T ss_pred CCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCC
Confidence 999999999999999875221 12346789999999999999999999998884 378999999999987665433222
Q ss_pred CCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEec--ccchhhhcCCchhhhhcc--CCCCceecCceEEEccCC
Q 037622 373 KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG--PGTMKEYINNADATMSTI--DKEGWLHTGDIAYFDEDG 448 (560)
Q Consensus 373 ~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~--~~~~~~~TGD~~~~~~~g 448 (560)
...+++++|+|+||++++|+| +++++++.|+.|||+|+| |+++.||+++++.+.+.+ ..+|||+|||+|++|+||
T Consensus 419 ~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG 497 (637)
T PRK00174 419 TPLKPGSATRPLPGIQPAVVD-EEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDG 497 (637)
T ss_pred CCcCCCcccCCCCCceEEEEC-CCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCC
Confidence 233567899999999999999 678999999999999999 689999999999887665 247899999999999999
Q ss_pred cEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCC---HHHHHHHHHhccC
Q 037622 449 YLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLT---EAAVIDYLAQRVA 525 (560)
Q Consensus 449 ~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~ 525 (560)
+++++||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..|+.++++|++.++...+ .++|+++++++|+
T Consensus 498 ~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~ 577 (637)
T PRK00174 498 YYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIG 577 (637)
T ss_pred cEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999988765444 4689999999999
Q ss_pred CCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 526 PYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 526 ~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
.++.|..++++++||+|++||++|++|++.+..+
T Consensus 578 ~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 611 (637)
T PRK00174 578 PIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGE 611 (637)
T ss_pred CccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence 9999999999999999999999999999987543
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-72 Score=592.22 Aligned_cols=520 Identities=40% Similarity=0.640 Sum_probs=440.4
Q ss_pred eeccCCCCCCCCCCCCCCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCC
Q 037622 25 IYHSKHPSVNLPANDSLLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPN 102 (560)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~ 102 (560)
++.+..+...++ +..|+.+++.+++. ++++|+++..+++++||.||.++++++|++|.+ .|+++||+|+++++|
T Consensus 9 ~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~-~g~~~gd~V~i~~~~ 84 (537)
T PLN02246 9 IFRSKLPDIYIP---NHLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHK-LGIRQGDVVMLLLPN 84 (537)
T ss_pred EecCCCCCCCCC---CCCcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCC
Confidence 334444443333 24789998887764 569999986556899999999999999999999 799999999999999
Q ss_pred CChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC---CCCEEEecCCCcccccCCC
Q 037622 103 SIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG---TTPVVAVPENLVNDFKEGR 179 (560)
Q Consensus 103 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~~~~ 179 (560)
+++++++++||+++|++++|++|.++.+++..+++.+++ ++++++......+.... ...++.++... ..
T Consensus 85 ~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~--~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~ 156 (537)
T PLN02246 85 CPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGA--KLIITQSCYVDKLKGLAEDDGVTVVTIDDPP------EG 156 (537)
T ss_pred ChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCC--cEEEEccchHHHHHHHhhcCCceEEEeCCCC------CC
Confidence 999999999999999999999999999999999999999 88988877665554332 13344443221 12
Q ss_pred cccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhh
Q 037622 180 FSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFH 259 (560)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 259 (560)
...+.++..............++++++++|||||||.||+|+++|+++............ ....+.++|++++..|++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~-~~~~~~~~d~~l~~~pl~~ 235 (537)
T PLN02246 157 CLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN-PNLYFHSDDVILCVLPMFH 235 (537)
T ss_pred ceeHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccc-cccCCCCCcEEEEeechHH
Confidence 233444433322222233456789999999999999999999999999877665433111 1345788999999999999
Q ss_pred HHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHH
Q 037622 260 IYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKI 339 (560)
Q Consensus 260 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~ 339 (560)
.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++. .......++++|.+++||+++++++
T Consensus 236 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~-~~~~~~~~~~lr~~~~gg~~l~~~~ 314 (537)
T PLN02246 236 IYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKS-PVVEKYDLSSIRMVLSGAAPLGKEL 314 (537)
T ss_pred HHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcC-ccccccCccceeEEEEecCcCCHHH
Confidence 999876788899999999999999999999999999999999999999999875 3334456789999999999999999
Q ss_pred HHHHHHhCCCCeeecccchhhcccccccCCC---CCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccch
Q 037622 340 IEDFVGAFPHVDFIQGYGMTESTAVGTRGFN---TKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTM 416 (560)
Q Consensus 340 ~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~---~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~ 416 (560)
.+.+.+.|++..+++.||+||++.+++.+.. .....+++++|+|+++++++++|++++++++.|+.|||+++|++++
T Consensus 315 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~ 394 (537)
T PLN02246 315 EDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIM 394 (537)
T ss_pred HHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchh
Confidence 9999999988999999999999876554321 1112356789999999999999987899999999999999999999
Q ss_pred hhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCC
Q 037622 417 KEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLG 496 (560)
Q Consensus 417 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~ 496 (560)
.||+++++.+...++.++||+|||+|+++++|.+++.||.+|+||.+|++|++.+||+.+.++|+|.+++|++.++...+
T Consensus 395 ~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~ 474 (537)
T PLN02246 395 KGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAG 474 (537)
T ss_pred ccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCC
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 497 EIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 497 ~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
+.++++++..++...+.++++++++++|++++.|+.++++++||+|++||++|++|+++++.
T Consensus 475 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~~ 536 (537)
T PLN02246 475 EVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA 536 (537)
T ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHhc
Confidence 89999999887767788899999999999999999999999999999999999999998864
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-74 Score=526.95 Aligned_cols=498 Identities=28% Similarity=0.409 Sum_probs=432.8
Q ss_pred CCHHHHHhccCCC--CceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKHN--GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~~--~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.++.+++.+++.. +++|++++ ++.+||+||++++.++|..|.+ +|+++||+|.+.+||..++++++||++++|+.
T Consensus 28 ~~l~d~L~~~A~~~pdriAv~d~--~~~~sY~eLdqr~d~LAa~l~~-lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~ 104 (542)
T COG1021 28 RTLTDILTDHAARYPDRIAVIDG--ERRLSYAELDQRADRLAAGLRR-LGIKPGDTVLVQLPNVAEFYITFFALLRLGVA 104 (542)
T ss_pred CcHHHHHHHHHhhcCCceEEecC--cccccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCchHHHHHHHHHHHHcCcc
Confidence 6788888888864 69999998 7889999999999999999999 89999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccc--------hHHh-hhcCCCCEEEecCCCcccccCCCcccHHHhhccc
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYEN--------VDKL-RSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGK 190 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~--------~~~~-~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (560)
+|.--|+....++.++...+.+ +.++.+... ...+ .+....+.+.+.... ......+..+....
T Consensus 105 PVlALpsHr~~Ei~~f~~~~e~--~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~-----~~~~~~~~~~~~~a 177 (542)
T COG1021 105 PVLALPSHRASELGAFASQIEA--ALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEA-----EHPSVLEAALCHPA 177 (542)
T ss_pred hhhccchhhHHHHHHHHHhhcc--hheeechhhcccCcHHHHHHHHhhCCcceEEEEccCC-----CCcchhhhhhhCcc
Confidence 9999899999999999999999 888776542 1111 122222333333221 11111222222222
Q ss_pred CCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHH-HHHHH
Q 037622 191 FDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLS-LFALG 269 (560)
Q Consensus 191 ~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~ 269 (560)
....+.++.+++++++...+.||||.||.++.||..+..+++...+ ...++...++++.+|..|.+.+. -+.++
T Consensus 178 ~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaE-----iC~~~~~tvyL~~LP~AHNfplssPG~LG 252 (542)
T COG1021 178 GLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAE-----ICGFDQQTVYLCALPAAHNFPLSSPGALG 252 (542)
T ss_pred ccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhh-----hhCcCccceEEEecccccCCCCCCcchhh
Confidence 2233345567889999999999999999999999999988887776 57789999999999999998773 47888
Q ss_pred HhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCC
Q 037622 270 LLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPH 349 (560)
Q Consensus 270 ~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~ 349 (560)
.+..|+++|+.+..+++..+.+|+++++|+.-.+|.+...|++. .+....++++||.+-+||..+++++.+++...+ +
T Consensus 253 v~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa-~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~l-g 330 (542)
T COG1021 253 VFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQA-AEWERADLSSLRLLQVGGARLSATLARRVPAVL-G 330 (542)
T ss_pred eeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHh-hhcccCCchheeEEeecCcccCHHHHhhchhhh-C
Confidence 99999999999999999999999999999999999999999988 555778999999999999999999999999999 9
Q ss_pred CeeecccchhhcccccccCCCCCCCCccccccccc-CCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhh
Q 037622 350 VDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLA-PNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMS 428 (560)
Q Consensus 350 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~-p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~ 428 (560)
+.+-+.+||.|.-. .+....++...-..+-|+|+ |.-+++|+| ++|+++++||+|+|..+||..++||++.|+....
T Consensus 331 C~LQQVFGMAEGLv-nyTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~ 408 (542)
T COG1021 331 CQLQQVFGMAEGLV-NYTRLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNAR 408 (542)
T ss_pred chHHHHhhhhhhhh-cccccCCchHheeecCCCcCCCcceeEEec-CCCCCCCCCCcceeeecCCeeeeeeccCchhhhh
Confidence 99999999999543 34444444444567889999 788999999 8999999999999999999999999999999999
Q ss_pred ccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCC
Q 037622 429 TIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDG 508 (560)
Q Consensus 429 ~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 508 (560)
.|+.+|||+|||++++++||++.+.||.+|+|+.+|+||..+|||+.|..||.|.++++|+.+|...|++.++||++++.
T Consensus 409 aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~ 488 (542)
T COG1021 409 AFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEP 488 (542)
T ss_pred ccCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCHHHHHHHHHhc-cCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 509 STLTEAAVIDYLAQR-VAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 509 ~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
. ....+++.++++. +..|++|++|.+++.||.|+-||||||+|++++...
T Consensus 489 ~-~~~~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~~ 539 (542)
T COG1021 489 P-LRAAQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASR 539 (542)
T ss_pred C-CCHHHHHHHHHHcchhhhcCCcceeecccCCCcccccccHHHHHHHhhhh
Confidence 4 7888999999887 899999999999999999999999999999998754
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-72 Score=595.88 Aligned_cols=493 Identities=27% Similarity=0.367 Sum_probs=419.6
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.++.+++.++++ ++++|+++. ++++||+||.++++++|++|.+ .|+++||+|+|+++|+++++++++||+++|++
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~--~~~~Ty~el~~~~~~la~~L~~-~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 125 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDE--RGTLTYAELDEQSNALARGLLA-LGVRAGDGVAVLARNHRGFVLALYAAGKVGAR 125 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEEC--CCceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCE
Confidence 377888877664 559999987 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC----CCEEEecCCCcccccCCCcccHHHhhcccCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT----TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVE 195 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (560)
++|+++.++.+++.++++.+++ ++++++++....+..... ...+...... .......+..++++.......
T Consensus 126 ~v~l~~~~~~~~l~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 200 (549)
T PRK07788 126 IILLNTGFSGPQLAEVAAREGV--KALVYDDEFTDLLSALPPDLGRLRAWGGNPDD-DEPSGSTDETLDDLIAGSSTA-- 200 (549)
T ss_pred EEEeCCCCCHHHHHHHHHhcCC--cEEEECchhHHHHHhhccccccceEEEEecCc-cccCCcCcccHHHHhcCCCCC--
Confidence 9999999999999999999999 999998876665543321 1222211111 001113344566665433221
Q ss_pred CCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCC
Q 037622 196 RPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGP 275 (560)
Q Consensus 196 ~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~ 275 (560)
.....+++.++++|||||||.||+|+++|.++...+..... ...+..+++++...|++|.+|+. .++.++..|+
T Consensus 201 ~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~-----~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~ 274 (549)
T PRK07788 201 PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLS-----RVPFRAGETTLLPAPMFHATGWA-HLTLAMALGS 274 (549)
T ss_pred CCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHh-----hCCCCcCCeEEEccchHHHHHHH-HHHHHHHhCC
Confidence 11224567899999999999999999999999888776655 45678899999999999999985 6777899999
Q ss_pred EEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeec
Q 037622 276 SVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354 (560)
Q Consensus 276 ~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~ 354 (560)
++++...+++..+++.++++++|++.++|+++..+++.... .....++++|.+++||+++++++.+++.+.| +.++++
T Consensus 275 ~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~ 353 (549)
T PRK07788 275 TVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAF-GPVLYN 353 (549)
T ss_pred EEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHh-Ccccee
Confidence 99999889999999999999999999999999999875222 1345678999999999999999999999998 788999
Q ss_pred ccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCC
Q 037622 355 GYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEG 434 (560)
Q Consensus 355 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~ 434 (560)
.||+||++..+.... ......++++|+|+++++++++| +++++++.|+.|||+++|+.++.||+++++. .. .+|
T Consensus 354 ~YG~TE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~--~~--~~g 427 (549)
T PRK07788 354 LYGSTEVAFATIATP-EDLAEAPGTVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPFEGYTDGRDK--QI--IDG 427 (549)
T ss_pred ccCcchhchhhccCh-hhhhhcCCCcccCCCCcEEEEEC-CCcCCCCCCCeEEEEEeCCCccccccCCCcc--cc--cCC
Confidence 999999986554332 22233567899999999999999 6789999999999999999999999998875 22 478
Q ss_pred ceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHH
Q 037622 435 WLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEA 514 (560)
Q Consensus 435 ~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 514 (560)
||+|||+++++++|.+++.||.||+||.+|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...+.+
T Consensus 428 ~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~ 507 (549)
T PRK07788 428 LLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDED 507 (549)
T ss_pred ceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999887778889
Q ss_pred HHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 515 AVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 515 ~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
+++++++++|++|++|..++++++||+|++||++|++|++.
T Consensus 508 ~l~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 508 AIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM 548 (549)
T ss_pred HHHHHHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence 99999999999999999999999999999999999999863
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-72 Score=599.47 Aligned_cols=540 Identities=19% Similarity=0.180 Sum_probs=425.8
Q ss_pred hhhhhhccCCCCCCCCCCCCCCceecc-CCCCCCCCCCCCCCCHHHHHhccCCCCceEEEECC-C--CceecHHHHHHHH
Q 037622 2 EKFLQTFSSERINTSQWYSPETGIYHS-KHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSL-S--GYSISYPQLFPLV 77 (560)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~--~~~~Ty~el~~~v 77 (560)
+.||++++.+. -..|..++.++++. ..+...|.. +..+|+.+.+..+ ..+++|++... + .+++||+||.+++
T Consensus 49 ~~fw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~wf~-~~~~n~~~~~~~~-~~~~~a~~~~~~~~~~~~~Ty~eL~~~v 124 (652)
T TIGR01217 49 DTFWKAVWEWF--DVRFSTPCARVVDDRTMPGAQWFP-GARLNYAENLLRA-AGTEPALLYVDETHEPAPVTWAELRRQV 124 (652)
T ss_pred HHHHHHHHHhC--CcceeCCCceeeeCCCCCCCEECC-CCeeeHHHHHhcc-CCCCeEEEEECCCCCeeEEeHHHHHHHH
Confidence 57888887764 26899999988853 334455665 6678999888775 45678877532 2 2689999999999
Q ss_pred HHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccc-----
Q 037622 78 QSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYEN----- 152 (560)
Q Consensus 78 ~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~----- 152 (560)
.++|.+|.+ +|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.+++ +++++.+..
T Consensus 125 ~~lA~~L~~-~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~--k~li~~~~~~~~~k 201 (652)
T TIGR01217 125 ASLAAALRA-LGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEP--KLLFTVDGYRYNGK 201 (652)
T ss_pred HHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCC--cEEEEccccccCCc
Confidence 999999998 899999999999999999999999999999999999999999999999999999 999987643
Q ss_pred ----hHHhhh----cCC-CCEEEecCCCcc---cccCCCcccHHHhhcccC-CCCCCCCCCCCCEEEEEcCCCCCCCchh
Q 037622 153 ----VDKLRS----WGT-TPVVAVPENLVN---DFKEGRFSDFHKLIAGKF-DLVERPVIRQQDTAAILYSSGTTGASKG 219 (560)
Q Consensus 153 ----~~~~~~----~~~-~~vi~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~ 219 (560)
.+.+.. ... ..++.+...... .........++++..... .........++++++|+|||||||.|||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKg 281 (652)
T TIGR01217 202 EHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKC 281 (652)
T ss_pred ccchHHHHHHHHhcCCCccEEEEEeCCCCcccccccccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCe
Confidence 122211 111 224443321100 000112334555544321 1112233456899999999999999999
Q ss_pred hhhhhHHHHHHH-HHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC----cCHHHHHHHHHH
Q 037622 220 AELTHGNFIAAV-ELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR----FEASEMLKVIDK 294 (560)
Q Consensus 220 v~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~ 294 (560)
|+++|.+++... ..... ..+++++|++++..|+.|+.+. .++.++..|+++++.+. .++..+++.+++
T Consensus 282 V~~sh~~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~--~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~ 354 (652)
T TIGR01217 282 IVHSAGGTLVQHLKEHGL-----HCDLGPGDRLFYYTTTGWMMWN--WLVSGLATGATLVLYDGSPGFPATNVLWDIAER 354 (652)
T ss_pred EEecccHHHHHHHHHHHh-----ccCCCCCcEEEEeCCcchhhhH--HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHH
Confidence 999999876433 22222 3567889999999999998643 35579999999999863 378899999999
Q ss_pred hCcceeccCcHHHHHHHHhh-hccCCCCCCccceeecccCCCCHHHHHHHHHhCC-CCeeecccchhhcccccccCCCCC
Q 037622 295 YGVTHFPVVPPILMALTKAA-KGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP-HVDFIQGYGMTESTAVGTRGFNTK 372 (560)
Q Consensus 295 ~~~t~l~~~P~~~~~l~~~~-~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~ 372 (560)
+++|++...|.+++.+.... ......++++||.+++||+++++++.+++.+.++ +..+.+.||+||++....... ..
T Consensus 355 ~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~-~~ 433 (652)
T TIGR01217 355 TGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGAN-PT 433 (652)
T ss_pred hCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCC-CC
Confidence 99999877777776665421 1123457899999999999999999999998873 456789999999754332221 11
Q ss_pred CCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecc--cchhhhcCCchhhh---hccC-CCCceecCceEEEcc
Q 037622 373 KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP--GTMKEYINNADATM---STID-KEGWLHTGDIAYFDE 446 (560)
Q Consensus 373 ~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~--~~~~gy~~~~~~~~---~~~~-~~~~~~TGD~~~~~~ 446 (560)
.....+++|.|.||++++++| ++++++ .|+.|||+++|| +++.|||++++.+. ..|. .+|||+|||+|++|+
T Consensus 434 ~~~~~g~~g~p~~g~~v~ivd-~~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~ 511 (652)
T TIGR01217 434 LPVHIGEIQAPGLGTAVQSWD-PEGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTP 511 (652)
T ss_pred CCCcCCccCCCcCCCceEEEC-CCCCCC-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECC
Confidence 233567899999999999999 577887 599999999996 68999999998654 1222 268999999999999
Q ss_pred CCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCH---HHHHHHHHhc
Q 037622 447 DGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTE---AAVIDYLAQR 523 (560)
Q Consensus 447 ~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~ 523 (560)
||+++++||.||+||.+|++|+|.|||++|.+||.|.+++|++.+++..|+.++++|++.++...+. ++++++++++
T Consensus 512 dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~ 591 (652)
T TIGR01217 512 RGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAG 591 (652)
T ss_pred CCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999987765543 5899999999
Q ss_pred cCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 524 VAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 524 l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
|+++++|+.|+++++||+|++|||+|+.||+.+..
T Consensus 592 l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~~ 626 (652)
T TIGR01217 592 LSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQG 626 (652)
T ss_pred CCCCcCCCEEEECCCCCCCCCccChHHHHHHHHcC
Confidence 99999999999999999999999999999998743
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-72 Score=597.00 Aligned_cols=504 Identities=26% Similarity=0.350 Sum_probs=412.1
Q ss_pred CCCCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHh
Q 037622 39 DSLLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYL 116 (560)
Q Consensus 39 ~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~ 116 (560)
+...|+.++|.+++. ++++|++++ ++++||+||.++++++|++|.+ +|+++||+|+|+++|+++++++++||+++
T Consensus 4 ~~~~~~~~~~~~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~V~v~~~n~~~~~~~~la~~~~ 80 (563)
T PLN02860 4 HSQAHICQCLTRLATLRGNAVVTISG--NRRRTGHEFVDGVLSLAAGLLR-LGLRNGDVVAIAALNSDLYLEWLLAVACA 80 (563)
T ss_pred hhhhHHHHHHHHHHHhcCCceEEecC--CceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHHhhc
Confidence 445899999887764 558999876 7899999999999999999999 79999999999999999999999999999
Q ss_pred CCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhc-----CCCC-EEEecCCCccc-ccCCCcccHHHhhcc
Q 037622 117 GAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSW-----GTTP-VVAVPENLVND-FKEGRFSDFHKLIAG 189 (560)
Q Consensus 117 G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~-----~~~~-vi~~~~~~~~~-~~~~~~~~~~~~~~~ 189 (560)
|++++|+++.++.+++.++++.+++ +++++++......... .... ++..++..... .........+++...
T Consensus 81 Gav~vpl~~~~~~~~l~~~l~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (563)
T PLN02860 81 GGIVAPLNYRWSFEEAKSAMLLVRP--VMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQR 158 (563)
T ss_pred cEEEEeCCcccCHHHHHHHHHhcCc--eEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhccccchhccC
Confidence 9999999999999999999999999 9999877542211111 1111 22222111000 000001111111111
Q ss_pred c-CCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHH
Q 037622 190 K-FDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFAL 268 (560)
Q Consensus 190 ~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 268 (560)
. ..........++++++++|||||||.||+|+++|.++..+...... ...+.++|+++...|++|..++. .++
T Consensus 159 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~-----~~~~~~~d~~l~~~pl~h~~g~~-~~~ 232 (563)
T PLN02860 159 ALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIA-----IVGYGEDDVYLHTAPLCHIGGLS-SAL 232 (563)
T ss_pred ccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHh-----hcCCCCCCEEEEecCchhhccHH-HHH
Confidence 0 0111112346789999999999999999999999999876665544 45678899999999999999985 678
Q ss_pred HHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhC
Q 037622 269 GLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAF 347 (560)
Q Consensus 269 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~ 347 (560)
.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.... .....++++|.+++||+++++++.+.+.+.|
T Consensus 233 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~ 312 (563)
T PLN02860 233 AMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLF 312 (563)
T ss_pred HHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999875221 1234578999999999999999999999999
Q ss_pred CCCeeecccchhhcccccccCCCCC---------------------CCCcccccccccCCeEEEEEeCCCCccCCCCCcc
Q 037622 348 PHVDFIQGYGMTESTAVGTRGFNTK---------------------KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTG 406 (560)
Q Consensus 348 ~~~~i~~~YG~tE~~~~~~~~~~~~---------------------~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~G 406 (560)
+++++++.||+||++..++...... ......++|+|+|++++++++++ .|+.|
T Consensus 313 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g~~G 386 (563)
T PLN02860 313 PNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SSRVG 386 (563)
T ss_pred CCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC------CCcee
Confidence 8899999999999986544321111 01112378999999999999843 58899
Q ss_pred eEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEE
Q 037622 407 ELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVA 486 (560)
Q Consensus 407 el~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~ 486 (560)
||+++|++++.||+++|+.+...++.+|||+|||+|+++++|++++.||.+|+||.+|++|+|.+||+++.++|+|.+++
T Consensus 387 el~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~ 466 (563)
T PLN02860 387 RILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVV 466 (563)
T ss_pred EEEEecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeE
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCCceEEEEEEecCCC--------------CCCHHHHHHHHHh-ccCCCCCcceEEEe-cCCCCCCCCcchHH
Q 037622 487 VTGAMDKVLGEIPVAFVVRRDGS--------------TLTEAAVIDYLAQ-RVAPYKKVRRVVFT-KSIPKSAAGKVLRR 550 (560)
Q Consensus 487 v~~~~~~~~~~~~~~~v~~~~~~--------------~~~~~~l~~~~~~-~l~~~~~p~~i~~~-~~lP~t~~GKi~r~ 550 (560)
|++.+++..++.++++|++.++. ....+++++++++ .|++|++|+.++++ ++||+|++||++|+
T Consensus 467 v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~ 546 (563)
T PLN02860 467 VVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRD 546 (563)
T ss_pred EEEEecCcCCceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCcccchhHH
Confidence 99999999899999999987652 3456789999998 59999999998765 77999999999999
Q ss_pred HHHHHHhcc
Q 037622 551 ELRKFLTSK 559 (560)
Q Consensus 551 ~L~~~~~~~ 559 (560)
+|++++.+.
T Consensus 547 ~L~~~~~~~ 555 (563)
T PLN02860 547 EVRREVLSH 555 (563)
T ss_pred HHHHHHHHH
Confidence 999998664
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-71 Score=601.25 Aligned_cols=541 Identities=21% Similarity=0.198 Sum_probs=432.1
Q ss_pred hhhhhhccCCCCCCCCCCCCCCceecc-CCCCCCCCCCCCCCCHHHHHhccCCCCceEEEECC-C--CceecHHHHHHHH
Q 037622 2 EKFLQTFSSERINTSQWYSPETGIYHS-KHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSL-S--GYSISYPQLFPLV 77 (560)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~--~~~~Ty~el~~~v 77 (560)
+.||++++.+.. ..|..++..++.. ..+...|.. +..+|+.+.+.++.+++++|++... . .+++||+||.+++
T Consensus 48 ~~fw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~wf~-~~~~n~~~~~~~~~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v 124 (655)
T PRK03584 48 EAFWQSVWDFFG--VIGSTPYTVVLAGRRMPGARWFP-GARLNYAENLLRHRRDDRPAIIFRGEDGPRRELSWAELRRQV 124 (655)
T ss_pred HHHHHHHHHhcC--ceecCCCcEeecCCCCCCCeeCC-CCEeeHHHHhhccCCCCCeEEEEECCCCceEEEeHHHHHHHH
Confidence 468877765532 4688888888754 234456776 6678998888765567799998642 1 2689999999999
Q ss_pred HHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccch----
Q 037622 78 QSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENV---- 153 (560)
Q Consensus 78 ~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~---- 153 (560)
+++|.+|.+ +|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.+++ +++++++...
T Consensus 125 ~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~--~~li~~~~~~~~~~ 201 (655)
T PRK03584 125 AALAAALRA-LGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEP--KVLIAVDGYRYGGK 201 (655)
T ss_pred HHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCC--cEEEEccccccCCc
Confidence 999999999 799999999999999999999999999999999999999999999999999999 9998876431
Q ss_pred -----HHhh---h-cCC-CCEEEecCCCc--ccccCCCcccHHHhhccc-CCCCCCCCCCCCCEEEEEcCCCCCCCchhh
Q 037622 154 -----DKLR---S-WGT-TPVVAVPENLV--NDFKEGRFSDFHKLIAGK-FDLVERPVIRQQDTAAILYSSGTTGASKGA 220 (560)
Q Consensus 154 -----~~~~---~-~~~-~~vi~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v 220 (560)
..+. . ... ..++.++.... ..........+.+++... ..........++++++|+|||||||.||||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV 281 (655)
T PRK03584 202 AFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCI 281 (655)
T ss_pred ccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceE
Confidence 1111 1 111 23444332110 001112234455554421 112222345678999999999999999999
Q ss_pred hhhhHHHHHH-HHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC----cCHHHHHHHHHHh
Q 037622 221 ELTHGNFIAA-VELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR----FEASEMLKVIDKY 295 (560)
Q Consensus 221 ~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 295 (560)
+++|.+++.+ ...... ...+.++|++++..++.|+.+. .++.++..|+++++.+. .++..+++.++++
T Consensus 282 ~~sh~~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~--~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~ 354 (655)
T PRK03584 282 VHGHGGILLEHLKELGL-----HCDLGPGDRFFWYTTCGWMMWN--WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEE 354 (655)
T ss_pred EECccHHHHHHHHHHHH-----hcCCCCCCEEEEcCCchHHhHH--HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 9999987644 333332 4567889999999999887553 46689999999999763 5799999999999
Q ss_pred CcceeccCcHHHHHHHHhhh-ccCCCCCCccceeecccCCCCHHHHHHHHHhC-CCCeeecccchhhcccccccCCCCCC
Q 037622 296 GVTHFPVVPPILMALTKAAK-GLCGNSLKSLKQVSSGAAPANSKIIEDFVGAF-PHVDFIQGYGMTESTAVGTRGFNTKK 373 (560)
Q Consensus 296 ~~t~l~~~P~~~~~l~~~~~-~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~ 373 (560)
++|++.++|++++.+.+... .....++++||.+++||+++++++.+++.+.+ +++.+.+.||+||++....... ...
T Consensus 355 ~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~-~~~ 433 (655)
T PRK03584 355 GVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGN-PLL 433 (655)
T ss_pred CCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCC-CCC
Confidence 99999999999999876411 12335688999999999999999999999988 4688999999999865433221 112
Q ss_pred CCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecc--cchhhhcCCchhhh--hc-cC-CCCceecCceEEEccC
Q 037622 374 FSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP--GTMKEYINNADATM--ST-ID-KEGWLHTGDIAYFDED 447 (560)
Q Consensus 374 ~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~--~~~~gy~~~~~~~~--~~-~~-~~~~~~TGD~~~~~~~ 447 (560)
...++++|.|+||++++|+| ++++++ .|+.|||+|++| +++.||+++++.+. .. |. .+|||+|||+|++|+|
T Consensus 434 ~~~~g~~g~p~~g~~~~ivd-~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~d 511 (655)
T PRK03584 434 PVYRGEIQCRGLGMAVEAWD-EDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEH 511 (655)
T ss_pred CcCCCccCCCcCCceeEEEC-CCCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCC
Confidence 34568899999999999999 578888 799999999996 78999999997543 11 21 2578999999999999
Q ss_pred CcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCH---HHHHHHHHhcc
Q 037622 448 GYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTE---AAVIDYLAQRV 524 (560)
Q Consensus 448 g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l 524 (560)
|.++++||.||+||.+|++|+|.|||++|.+||.|.+++|++.+++..++.++++|++.++...+. ++++++++++|
T Consensus 512 G~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L 591 (655)
T PRK03584 512 GGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNL 591 (655)
T ss_pred CeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999888999999999987654443 68999999999
Q ss_pred CCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 525 APYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 525 ~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
+++++|..|+++++||+|++|||+|+.||+.+..
T Consensus 592 ~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~~ 625 (655)
T PRK03584 592 SPRHVPDKIIAVPDIPRTLSGKKVELPVKKLLHG 625 (655)
T ss_pred CCCcCCCEEEECCCCCCCCCccchHHHHHHHHcC
Confidence 9999999999999999999999999999998754
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-71 Score=598.99 Aligned_cols=544 Identities=23% Similarity=0.309 Sum_probs=433.0
Q ss_pred hhhhhhccCCCCCCCCCCCCCCceecc-CCCCCCCCCCCCCCCHHH-HHhccC--CCCceEEEEC----CCCceecHHHH
Q 037622 2 EKFLQTFSSERINTSQWYSPETGIYHS-KHPSVNLPANDSLLDVDS-FIFSHK--HNGRTALVDS----LSGYSISYPQL 73 (560)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~a~~~~----~~~~~~Ty~el 73 (560)
+.||++.... ..|.+++.+++.. ..|...|.. +..+|+.. ++.+++ +++++|++.. .+.+++||+||
T Consensus 16 ~~fw~~~~~~----~~~~~~~~~~~~~~~~~~~~wf~-~~~~n~~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL 90 (629)
T PRK10524 16 EAFWAEQARR----IDWQTPFTQVLDYSNPPFARWFV-GGRTNLCHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQL 90 (629)
T ss_pred HHHHHHHHHh----CCcccCchhhccCCCCCcCccCC-CcEeeHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHH
Confidence 4677666552 4699998888753 233345665 55677644 454443 3569998852 12468999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccch
Q 037622 74 FPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENV 153 (560)
Q Consensus 74 ~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~ 153 (560)
.++++++|++|.+ +|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.+++ +++++++...
T Consensus 91 ~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~--~~li~~~~~~ 167 (629)
T PRK10524 91 HDEVNRMAAMLRS-LGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKP--VLIVSADAGS 167 (629)
T ss_pred HHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCC--cEEEEccCcc
Confidence 9999999999999 899999999999999999999999999999999999999999999999999999 9998865421
Q ss_pred ---------HHhh---hc---CCCCEEEecCCCcc-cccCCCcccHHHhhcccCC-CCCCCCCCCCCEEEEEcCCCCCCC
Q 037622 154 ---------DKLR---SW---GTTPVVAVPENLVN-DFKEGRFSDFHKLIAGKFD-LVERPVIRQQDTAAILYSSGTTGA 216 (560)
Q Consensus 154 ---------~~~~---~~---~~~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~ 216 (560)
+.+. .. ....++.++..... .........+.++...... ........++++++++|||||||.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~ 247 (629)
T PRK10524 168 RGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGK 247 (629)
T ss_pred cCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCC
Confidence 1111 11 11344544432110 0011112334444332211 112223467899999999999999
Q ss_pred chhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC----cCHHHHHHHH
Q 037622 217 SKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR----FEASEMLKVI 292 (560)
Q Consensus 217 PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l 292 (560)
||+|+++|.++.......... ..++.++|++++..|+.|..+....++.++..|+++++.+. .++..+++.+
T Consensus 248 PKgV~~~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i 323 (629)
T PRK10524 248 PKGVQRDTGGYAVALATSMDT----IFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIV 323 (629)
T ss_pred CceEEECCcHHHHHHHHHHHH----hcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHH
Confidence 999999999876544333221 35678899999999999998887788999999999998763 5789999999
Q ss_pred HHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCC
Q 037622 293 DKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNT 371 (560)
Q Consensus 293 ~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~ 371 (560)
+++++|+++++|++++.|.+.... ....++++||.+++||+++++++.+++.+.+ ++++++.||+||++..+......
T Consensus 324 ~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~ 402 (629)
T PRK10524 324 EKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEAL-GVPVIDNYWQTETGWPILAIARG 402 (629)
T ss_pred HHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhc-CCCeEeccccccccchhhcCCCC
Confidence 999999999999999998764221 2345678999999999999999999999988 79999999999998533222111
Q ss_pred --CCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecc---cchhhhcCCchhhhhcc---CCCCceecCceEE
Q 037622 372 --KKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP---GTMKEYINNADATMSTI---DKEGWLHTGDIAY 443 (560)
Q Consensus 372 --~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~---~~~~~~~TGD~~~ 443 (560)
.....++++|.|+||++++|+|++++++++.|+.|||+++|| +++.||+++++.+.+.+ ..++||+|||+|+
T Consensus 403 ~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~ 482 (629)
T PRK10524 403 VEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGI 482 (629)
T ss_pred cccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEE
Confidence 123356889999999999999965899999999999999998 57889999998776543 1468999999999
Q ss_pred EccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCC--------CHHH
Q 037622 444 FDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTL--------TEAA 515 (560)
Q Consensus 444 ~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~ 515 (560)
+++||.++++||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..|+.+++++++.++... ..++
T Consensus 483 ~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK10524 483 RDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKE 562 (629)
T ss_pred EcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999998765332 2468
Q ss_pred HHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 516 VIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 516 l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
++++++++|++++.|..|+++++||+|++||++|+.|++.+..
T Consensus 563 i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 605 (629)
T PRK10524 563 IMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEG 605 (629)
T ss_pred HHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999988653
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-71 Score=584.53 Aligned_cols=490 Identities=22% Similarity=0.260 Sum_probs=402.1
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.++.+.|.+.++ ++++|+++.. .+++||+||.++++++|+.|.+ . +||+|+|+++|++++++++|||+++|++
T Consensus 19 ~~~~~~~~~~~~~~p~~~a~~~~~-~~~~Ty~el~~~~~~lA~~L~~-~---~gd~Val~~~n~~e~~~~~lA~~~~G~v 93 (539)
T PRK06334 19 KTVLESFLKLCSEMTTATVCWDEQ-LGKLSYNQVRKAVIALATKVSK-Y---PDQHIGIMMPASAGAYIAYFATLLSGKI 93 (539)
T ss_pred CcHHHHHHHHHHhCCCceEEEeCC-CCcccHHHHHHHHHHHHHHHhh-c---cCCeEEEEcCCchHHHHHHHHHHhcCCe
Confidence 677787777765 4588888752 3689999999999999999977 2 8999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC------CCEEEecCCCcccccCCCcccHHHhhc-----
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT------TPVVAVPENLVNDFKEGRFSDFHKLIA----- 188 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------~~vi~~~~~~~~~~~~~~~~~~~~~~~----- 188 (560)
++|+++.++.+++.++++.+++ ++++++......+.+... ..++.+++.. ....+.+...
T Consensus 94 ~vpl~~~~~~~~l~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~ 164 (539)
T PRK06334 94 PVMINWSQGLREVTACANLVGV--THVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVR-------KELSFWEKCRIGIYM 164 (539)
T ss_pred eEecCcccchHHHHHHHHHcCC--CEEEehHHHHHHHhhhhhccccccccEEEEehhh-------hhccHHHhhhhhhhh
Confidence 9999999999999999999999 999998776555443211 1233332210 0000001000
Q ss_pred ccC-----CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhH
Q 037622 189 GKF-----DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGL 263 (560)
Q Consensus 189 ~~~-----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~ 263 (560)
... .........++++++|+|||||||.||+|+++|+++......... ...++++|++++++|++|.+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~h~~g~ 239 (539)
T PRK06334 165 SIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLK-----FFSPKEDDVMMSFLPPFHAYGF 239 (539)
T ss_pred cCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH-----hcCCCCCceEEEecchHhhhhh
Confidence 000 001122456789999999999999999999999999887766654 4567889999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeC-CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHH
Q 037622 264 SLFALGLLSLGPSVVVMR-RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIED 342 (560)
Q Consensus 264 ~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~ 342 (560)
...++.++..|+++++.. .+++..+++.++++++|++.++|++++.|++. .......++++|.+++||+++++++.++
T Consensus 240 ~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~i~~gG~~l~~~~~~~ 318 (539)
T PRK06334 240 NSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKT-AKKQESCLPSLRFVVIGGDAFKDSLYQE 318 (539)
T ss_pred HHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHh-hhhcccccccccEEEECCccCCHHHHHH
Confidence 767788999999998875 57999999999999999999999999999876 3334456789999999999999999999
Q ss_pred HHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCC
Q 037622 343 FVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINN 422 (560)
Q Consensus 343 ~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~ 422 (560)
+.+.++++.+++.||+||++.+++..... .....+++|+|+||++++++|++++.+++.|+.|||+|+|++++.||+++
T Consensus 319 ~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~ 397 (539)
T PRK06334 319 ALKTFPHIQLRQGYGTTECSPVITINTVN-SPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGE 397 (539)
T ss_pred HHHHCCCCeEEecccccccCceEEeccCC-CCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCC
Confidence 99999889999999999998776644322 22345689999999999999977789999999999999999999999999
Q ss_pred chhhhhc-cCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCccc------EEEEcccCCCC
Q 037622 423 ADATMST-IDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILD------VAVTGAMDKVL 495 (560)
Q Consensus 423 ~~~~~~~-~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~------~~v~~~~~~~~ 495 (560)
++.+... .++++||+|||+|++|++|.+++.||.+|+||++|++|+|.|||++|.+||+|.+ ++|++.++..
T Consensus 398 ~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~- 476 (539)
T PRK06334 398 DFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEK- 476 (539)
T ss_pred cccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCc-
Confidence 9865432 2357899999999999999999999999999999999999999999999999987 7788877543
Q ss_pred CceEEEEEEecCCCCCCHHHHHHHHHhc-cCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 496 GEIPVAFVVRRDGSTLTEAAVIDYLAQR-VAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 496 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
..++++++.. .+.++++++|+++ ++.|++|+.++++++||+|++|||+|++|++.+..
T Consensus 477 -~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 535 (539)
T PRK06334 477 -VRLCLFTTFP----TSISEVNDILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALAKS 535 (539)
T ss_pred -eEEEEEEecc----CChHHHHHHHHhcCCcccccchheeeecccccccCCcccHHHHHHHHHH
Confidence 2344444422 3567899999886 78999999999999999999999999999987653
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-70 Score=587.68 Aligned_cols=503 Identities=28% Similarity=0.385 Sum_probs=417.2
Q ss_pred CCHHHHHhccCC--CCceEEEEC------CCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHH
Q 037622 42 LDVDSFIFSHKH--NGRTALVDS------LSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLAL 113 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~------~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~ 113 (560)
.|+.++|.+.++ ++++|+++. ...+++||+||.+++.++|++|.+ +|+++||+|+++++|++++++++|||
T Consensus 25 ~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~-~Gi~~gd~V~i~~~n~~e~~~~~lA~ 103 (632)
T PRK07529 25 ASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHS-LGVGPGDVVAFLLPNLPETHFALWGG 103 (632)
T ss_pred CCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 688888887774 568998752 135799999999999999999999 89999999999999999999999999
Q ss_pred HHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccc-----hHHhhh----cCC-CCEEEecCCCc-ccc-------
Q 037622 114 LYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYEN-----VDKLRS----WGT-TPVVAVPENLV-NDF------- 175 (560)
Q Consensus 114 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~-----~~~~~~----~~~-~~vi~~~~~~~-~~~------- 175 (560)
+++| +++|+++.++.+++.++++.+++ ++++++... .+.+.. ... ..++.++.... ...
T Consensus 104 ~~~G-i~~pi~~~~~~~~i~~~l~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 180 (632)
T PRK07529 104 EAAG-IANPINPLLEPEQIAELLRAAGA--KVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPL 180 (632)
T ss_pred HHhC-EEEeCCCcCCHHHHHHHHHhcCC--cEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccccc
Confidence 9999 57999999999999999999999 888887532 122211 111 22333332110 000
Q ss_pred ----cCCCcccHHHhhcccCCC--CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCc
Q 037622 176 ----KEGRFSDFHKLIAGKFDL--VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEA 249 (560)
Q Consensus 176 ----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (560)
...+...+.+.+...... .......++++++++|||||||.||+|+++|.++..+...... ...+.+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~-----~~~~~~~d 255 (632)
T PRK07529 181 IRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGAL-----LLGLGPGD 255 (632)
T ss_pred cccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHH-----hcCCCCCC
Confidence 112233455544433221 1222346789999999999999999999999999887766554 45568899
Q ss_pred EEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCc---C---HHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCC
Q 037622 250 VFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRF---E---ASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLK 323 (560)
Q Consensus 250 ~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~---~---~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~ 323 (560)
++++.+|++|..+....++.++..|+++++.++. + ...+++.++++++|++.++|+++..|++. + ....+++
T Consensus 256 ~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~-~~~~~~~ 333 (632)
T PRK07529 256 TVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQV-P-VDGHDIS 333 (632)
T ss_pred EEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhC-c-ccCCCcc
Confidence 9999999999999987889999999999997642 1 36789999999999999999999999875 2 2234678
Q ss_pred ccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeC-CCC---cc
Q 037622 324 SLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDW-VNG---CF 399 (560)
Q Consensus 324 ~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~-~~~---~~ 399 (560)
++|.+++||+++++++.+++.+.+ ++++++.||+||++.++...... .....+++|.|+|++.++++.. +++ ++
T Consensus 334 slr~v~~gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~ 411 (632)
T PRK07529 334 SLRYALCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPD-GERRIGSVGLRLPYQRVRVVILDDAGRYLRD 411 (632)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHh-CCcEeeeecccccCcccccCCcc-ccccCCCcccccCCceEEEEEcCCCCccccc
Confidence 999999999999999999999998 89999999999998776654322 2346789999999999988632 345 78
Q ss_pred CCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcC
Q 037622 400 LPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICH 479 (560)
Q Consensus 400 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~ 479 (560)
++.|+.|||+|+||+++.||++++. +...+..++||+|||+|++++||.+++.||.||+||.+|++|+|.+||++|.+|
T Consensus 412 ~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~ 490 (632)
T PRK07529 412 CAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRH 490 (632)
T ss_pred CCCCCceEEEEECCCccccccCCcc-ccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhC
Confidence 9999999999999999999998654 555565789999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccC-CCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 480 PEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVA-PYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 480 ~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~-~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
|+|.+++|++.++...|+.++++|++.++...+.++++++++++++ .+++|+.|+++++||+|++||++|++|++.+..
T Consensus 491 p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~~l~~~~~~~l~~~~~~P~~i~~v~~lP~t~~GKi~r~~Lr~~~~~ 570 (632)
T PRK07529 491 PAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAVPKHVRILDALPKTAVGKIFKPALRRDAIR 570 (632)
T ss_pred CCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHHHHHHHHHHhcchhccCCcEEEEecCCCCCCCCcccHHHHHHHHHH
Confidence 9999999999999999999999999998877888999999999997 578999999999999999999999999998754
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-70 Score=577.07 Aligned_cols=520 Identities=35% Similarity=0.569 Sum_probs=434.6
Q ss_pred CceeccCCCCCCCCCCCCCCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEc
Q 037622 23 TGIYHSKHPSVNLPANDSLLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLL 100 (560)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~ 100 (560)
+-+|.++.+.... +...|+.+.+.+.+. ++++|+++...++.+||+||.+++.++|..|.+ .|+++||+|++++
T Consensus 12 ~~~~~~~~~~~~~---~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~ 87 (546)
T PLN02330 12 EHIFRSRYPSVPV---PDKLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRS-LGLRKGQVVVVVL 87 (546)
T ss_pred ceeeccCCCCCCC---CCCCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEC
Confidence 3455555554322 234788888887775 558999876557899999999999999999999 7999999999999
Q ss_pred CCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCc
Q 037622 101 PNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRF 180 (560)
Q Consensus 101 ~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 180 (560)
+|+++++++++||+++|++++|+++..+.+++.++++.+++ +++++++.....+.... ..++.++... ....
T Consensus 88 ~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~--~~~i~~~~~~~~~~~~~-~~~i~~~~~~-----~~~~ 159 (546)
T PLN02330 88 PNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGA--KLIVTNDTNYGKVKGLG-LPVIVLGEEK-----IEGA 159 (546)
T ss_pred CCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCC--eEEEEccchhhhHhhcC-CcEEEecCCC-----CCCc
Confidence 99999999999999999999999999999999999999999 99999988776665443 3444444321 1223
Q ss_pred ccHHHhhcccCC---CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecCh
Q 037622 181 SDFHKLIAGKFD---LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPM 257 (560)
Q Consensus 181 ~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 257 (560)
..+.+++..... ........++++++++|||||||.||+|+++|.++..++....... .......++.+.++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~ 236 (546)
T PLN02330 160 VNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV---GPEMIGQVVTLGLIPF 236 (546)
T ss_pred ccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc---CccccCceEEEEecCh
Confidence 345555433211 1112334568999999999999999999999999987654322100 1112345689999999
Q ss_pred hhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCC--ccceeecccCCC
Q 037622 258 FHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLK--SLKQVSSGAAPA 335 (560)
Q Consensus 258 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~--~lr~~~~~g~~~ 335 (560)
+|.+++...++.++..|+++++.+.+++..+++.++++++|.+.++|+++..+.+. .......+. ++|.+++||+++
T Consensus 237 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~~~~~~~l~~i~~~g~~l 315 (546)
T PLN02330 237 FHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKN-PIVEEFDLSKLKLQAIMTAAAPL 315 (546)
T ss_pred HHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhC-ccccccccchheeeeEEEcCCcC
Confidence 99999877788899999999999999999999999999999999999999999875 323333333 478999999999
Q ss_pred CHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCC---CCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEec
Q 037622 336 NSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKK---FSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG 412 (560)
Q Consensus 336 ~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~---~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~ 412 (560)
++++++++.+.|+++++++.||+||++.++........ ....+++|.|+|+++++++|++++++++.|+.|||+++|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g 395 (546)
T PLN02330 316 APELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRS 395 (546)
T ss_pred CHHHHHHHHHHcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEec
Confidence 99999999999989999999999999876543321111 123568999999999999998889999999999999999
Q ss_pred ccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccC
Q 037622 413 PGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMD 492 (560)
Q Consensus 413 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~ 492 (560)
++++.||+++++.+...++.+|||+|||+|++++||.+++.||.+|+|+.+|++|++.+||+++.++|.|.+++|++.++
T Consensus 396 ~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 475 (546)
T PLN02330 396 QCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPD 475 (546)
T ss_pred chhhhhhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccc
Confidence 99999999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 493 KVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 493 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
...++.++++|++.++...+.++++++++++|+.++.|+.+++++++|+|++||++|++|++++..
T Consensus 476 ~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~ 541 (546)
T PLN02330 476 EEAGEIPAACVVINPKAKESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLS 541 (546)
T ss_pred cccCceeEEEEEECCCCCCCHHHHHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHh
Confidence 888899999999887766778899999999999999999999999999999999999999999864
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-70 Score=589.39 Aligned_cols=542 Identities=20% Similarity=0.226 Sum_probs=419.9
Q ss_pred hhhhhhccCCCCCCCCCCCCCCceecc---CCCCCCCCCCCCCCCHHHHHhcc---CCCCceEEEECCCC------ceec
Q 037622 2 EKFLQTFSSERINTSQWYSPETGIYHS---KHPSVNLPANDSLLDVDSFIFSH---KHNGRTALVDSLSG------YSIS 69 (560)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~------~~~T 69 (560)
+.||++.+.+.. ..|.++...+... ..|...|.. +..+|+.+.+++. ..++++|++...++ +++|
T Consensus 134 ~~fw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~wf~-g~~ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~T 210 (728)
T PLN03052 134 EVYWSIVLDELS--LVFSVPPRCILDTSDESNPGGQWLP-GAVLNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMT 210 (728)
T ss_pred HHHHHHHHHhcC--CCccCCCceeecCCCCCCCCCEECC-CCEeEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEee
Confidence 567877776632 4677777777653 223344554 5567776655433 24579999864321 5899
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEee
Q 037622 70 YPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTI 149 (560)
Q Consensus 70 y~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~ 149 (560)
|+||.++++++|++|.+ +|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.+++ +++++.
T Consensus 211 y~eL~~~v~~lA~~L~~-~Gv~~GdrVai~~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~--k~lit~ 287 (728)
T PLN03052 211 LSELRSQVSRVANALDA-LGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKA--KAIFTQ 287 (728)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCc--eEEEEc
Confidence 99999999999999999 899999999999999999999999999999999999999999999999999999 999987
Q ss_pred ccch---------HHhhhcCCCCEEEecCCCcc-ccc-CCCcccHHHhhcccC-----CCCCCCCCCCCCEEEEEcCCCC
Q 037622 150 YENV---------DKLRSWGTTPVVAVPENLVN-DFK-EGRFSDFHKLIAGKF-----DLVERPVIRQQDTAAILYSSGT 213 (560)
Q Consensus 150 ~~~~---------~~~~~~~~~~vi~~~~~~~~-~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~i~~TSGT 213 (560)
+... ..+.......++++...... ... ......+++++.... .........++++++|+|||||
T Consensus 288 d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGT 367 (728)
T PLN03052 288 DVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGT 367 (728)
T ss_pred CccccCCcccchHHHHHHhcCCcEEEEeCCCCccccccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCC
Confidence 6532 12221122233333321100 000 012334555543321 1111122356899999999999
Q ss_pred CCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC-cCHHHHHHHH
Q 037622 214 TGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR-FEASEMLKVI 292 (560)
Q Consensus 214 TG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l 292 (560)
||.||||+++|.+++........ ...++++|++++..|+.|+.+. ..++.+|..|++++++++ .++..+++.+
T Consensus 368 TG~PKgVv~sh~~~l~~~~~~~~-----~~~l~~~d~~~~~~~l~w~~g~-~~v~~~L~~Gat~vl~~g~p~~~~~~~~i 441 (728)
T PLN03052 368 TGEPKAIPWTQLTPLRAAADAWA-----HLDIRKGDIVCWPTNLGWMMGP-WLVYASLLNGATLALYNGSPLGRGFAKFV 441 (728)
T ss_pred CCCCceEEECchHHHHHHHHHHH-----hcCCCCCcEEEECCCcHHHhHH-HHHHHHHHhCCEEEEeCCCCCCChHHHHH
Confidence 99999999999988766544433 3567889999999999999998 477899999999999875 4567899999
Q ss_pred HHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCC
Q 037622 293 DKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTK 372 (560)
Q Consensus 293 ~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~ 372 (560)
+++++|++.++|++++.|.+. ....+.++++||.++++||+++++...++.+.++..++.+.||+||+++........
T Consensus 442 ~~~~vT~l~~~Pt~l~~l~~~-~~~~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~- 519 (728)
T PLN03052 442 QDAKVTMLGTVPSIVKTWKNT-NCMAGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLL- 519 (728)
T ss_pred HHHCCCEEEECHHHHHHHHhc-CCcccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCC-
Confidence 999999999999999999765 323456789999999999999999988888877446899999999998654332211
Q ss_pred CCCcccccccccCCeEEEEEeCCCCccCCCCC--cceEEEecc--cchhhhcCCchhhhhccC------CCCceecCceE
Q 037622 373 KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGS--TGELWLRGP--GTMKEYINNADATMSTID------KEGWLHTGDIA 442 (560)
Q Consensus 373 ~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~--~Gel~v~~~--~~~~gy~~~~~~~~~~~~------~~~~~~TGD~~ 442 (560)
....++++|.|.+|++++|+| ++|++++.|+ .|||++.++ ....+|+++. .....|. +..||+|||++
T Consensus 520 ~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~ 597 (728)
T PLN03052 520 QPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDIF 597 (728)
T ss_pred CCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCceE
Confidence 123567899999999999999 6889999885 699999864 2335666653 2222231 23489999999
Q ss_pred EEccCCcEEEEccccceeeecceecChHHHHHHHh-cCCCcccEEEEcccCCCCC-ceEEEEEEec--CCCCCCHHHHHH
Q 037622 443 YFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLI-CHPEILDVAVTGAMDKVLG-EIPVAFVVRR--DGSTLTEAAVID 518 (560)
Q Consensus 443 ~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~--~~~~~~~~~l~~ 518 (560)
++|+||+++++||.||+||++|++|++.|||++|. .+|.|.|++|++.+++..| +.++++|++. ++...+.++|++
T Consensus 598 ~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~ 677 (728)
T PLN03052 598 ERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKK 677 (728)
T ss_pred EECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999995 7899999999999998776 8899999987 555555555555
Q ss_pred ----HHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 519 ----YLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 519 ----~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+++++|+++++|+.|+++++||+|++||++|+.||+.+.+.
T Consensus 678 ~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~~~ 722 (728)
T PLN03052 678 IFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQE 722 (728)
T ss_pred HHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHHHHHHHhh
Confidence 46677889999999999999999999999999999988754
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-70 Score=578.40 Aligned_cols=497 Identities=27% Similarity=0.424 Sum_probs=421.9
Q ss_pred CCHHHHHhccC--CCCceEEEECCC----CceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 037622 42 LDVDSFIFSHK--HNGRTALVDSLS----GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115 (560)
Q Consensus 42 ~~~~~~~~~~~--~~~~~a~~~~~~----~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 115 (560)
.++.+.+.+.+ .++++|+++... .+.+||.||+++++++|.+|.+ +|+++|++|+++++|++++++++|||++
T Consensus 24 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~Val~~~n~~e~~~~~la~~~ 102 (547)
T PRK13295 24 RTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLAR-LGVGRGDVVSCQLPNWWEFTVLYLACSR 102 (547)
T ss_pred CCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 57888877665 466999987531 2799999999999999999999 7999999999999999999999999999
Q ss_pred hCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccc-----hHHhhhc----CC-CCEEEecCCCcccccCCCcccHHH
Q 037622 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYEN-----VDKLRSW----GT-TPVVAVPENLVNDFKEGRFSDFHK 185 (560)
Q Consensus 116 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~-----~~~~~~~----~~-~~vi~~~~~~~~~~~~~~~~~~~~ 185 (560)
+|++++|++|.++.+++.++++.+++ +++++++.. ...+... .. ..++.++.. ...++.+
T Consensus 103 ~G~~~vpl~~~~~~~~l~~~l~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 172 (547)
T PRK13295 103 IGAVLNPLMPIFRERELSFMLKHAES--KVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGD--------GADSFEA 172 (547)
T ss_pred cCcEEeccccccCHHHHHHHHHhcCc--eEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCC--------CccCHHH
Confidence 99999999999999999999999999 999887653 1111111 11 223333221 1122333
Q ss_pred hhccc--------CCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecCh
Q 037622 186 LIAGK--------FDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPM 257 (560)
Q Consensus 186 ~~~~~--------~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 257 (560)
+.... ..........++++++++|||||||.||+|+++|.++...+..... ...+.+++++++..|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~-----~~~~~~~~~~l~~~p~ 247 (547)
T PRK13295 173 LLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAE-----RLGLGADDVILMASPM 247 (547)
T ss_pred HhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHH-----HhCCCCCCeEEEecCc
Confidence 32111 0111122345689999999999999999999999999888776655 4567889999999999
Q ss_pred hhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCH
Q 037622 258 FHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANS 337 (560)
Q Consensus 258 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~ 337 (560)
+|..++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+... .......++++|.+++||+++++
T Consensus 248 ~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~-~~~~~~~~~~l~~~~~~G~~l~~ 326 (547)
T PRK13295 248 AHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRA-VKESGRPVSSLRTFLCAGAPIPG 326 (547)
T ss_pred hhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhc-ccccCCCcccceEEEEecCCCCH
Confidence 99999877889999999999999888999999999999999999999999999876 33345667899999999999999
Q ss_pred HHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchh
Q 037622 338 KIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMK 417 (560)
Q Consensus 338 ~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~ 417 (560)
++.+++.+.+ ++++++.||+||++.+++.+..........++|+|+|+++++++| +++++++.|+.|||+|+|++++.
T Consensus 327 ~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~ 404 (547)
T PRK13295 327 ALVERARAAL-GAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGAPLPAGQIGRLQVRGCSNFG 404 (547)
T ss_pred HHHHHHHHHh-CCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCCCCCCCCCCeEEEEcCcccc
Confidence 9999999998 899999999999987765543322223456889999999999999 56889999999999999999999
Q ss_pred hhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCc
Q 037622 418 EYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGE 497 (560)
Q Consensus 418 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~ 497 (560)
||+++|+.+... .+|||+|||+|+++++|++++.||.+|+||.+|++|++.+||++|.++++|.+++|++.+++..++
T Consensus 405 gY~~~~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~ 482 (547)
T PRK13295 405 GYLKRPQLNGTD--ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGE 482 (547)
T ss_pred cccCCccccccC--CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCc
Confidence 999999988765 578999999999999999999999999999999999999999999999999999999999998889
Q ss_pred eEEEEEEecCCCCCCHHHHHHHHHh-ccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 498 IPVAFVVRRDGSTLTEAAVIDYLAQ-RVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 498 ~~~~~v~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
.+++++++.++...+.+++++++++ .++++++|++++++++||+|.+||++|++|++.+.++
T Consensus 483 ~~~~~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~~~ 545 (547)
T PRK13295 483 RACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRGE 545 (547)
T ss_pred EEEEEEEeCCCCCCCHHHHHHHHHhccCccccCCcEEEEeccCCCCCCccccHHHHHHHHhcC
Confidence 9999999887766777899999986 6999999999999999999999999999999988754
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-70 Score=582.42 Aligned_cols=501 Identities=25% Similarity=0.363 Sum_probs=421.1
Q ss_pred CCHH-HHHhccCC---CCceEEEECC--CCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 037622 42 LDVD-SFIFSHKH---NGRTALVDSL--SGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115 (560)
Q Consensus 42 ~~~~-~~~~~~~~---~~~~a~~~~~--~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 115 (560)
.|+. +.+.+++. ++++|++... ..+++||+||.++++++|.+|.+ +|+++||+|+++++|++++++++|||++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~~~la~~~ 120 (570)
T PRK04319 42 VNIAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKE-LGVEKGDRVFIFMPRIPELYFALLGALK 120 (570)
T ss_pred eeHHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 4444 45665543 5689988632 34799999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhc--CC-CCEEEecCCCcccccCCCcccHHHhhcccCC
Q 037622 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSW--GT-TPVVAVPENLVNDFKEGRFSDFHKLIAGKFD 192 (560)
Q Consensus 116 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~--~~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (560)
+|++++|+++.++.+++.++++.+++ +.+++++......... .. ..++.++... .......++.+.+.....
T Consensus 121 ~G~v~vpl~~~~~~~~l~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 195 (570)
T PRK04319 121 NGAIVGPLFEAFMEEAVRDRLEDSEA--KVLITTPALLERKPADDLPSLKHVLLVGEDV---EEGPGTLDFNALMEQASD 195 (570)
T ss_pred cCcEEcccccccCHHHHHHHHHccCC--cEEEEChhhhhccchhcCCCceEEEEECCCc---CCCcCccCHHHHHhhcCC
Confidence 99999999999999999999999999 9999887654433211 11 2233333221 012233455555544333
Q ss_pred CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhh
Q 037622 193 LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLS 272 (560)
Q Consensus 193 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~ 272 (560)
........++++++++|||||||.||+|+++|.++...+..... ...+.++|++++..|++|..|....++.++.
T Consensus 196 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~ 270 (570)
T PRK04319 196 EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKY-----VLDLHEDDVYWCTADPGWVTGTSYGIFAPWL 270 (570)
T ss_pred cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHH-----hcCCCCCceEEecCChHHhhCchHHHHHHHh
Confidence 33333456789999999999999999999999999887766554 4667889999999999999998778899999
Q ss_pred CCCEEEEeC-CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCCCC
Q 037622 273 LGPSVVVMR-RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHV 350 (560)
Q Consensus 273 ~G~~~v~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~ 350 (560)
.|+++++.. .+++..+++.++++++|+++++|++++.|.+.... ....+++++|.+++||+++++++.+++.+.+ +.
T Consensus 271 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~ 349 (570)
T PRK04319 271 NGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVF-GL 349 (570)
T ss_pred cCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHh-CC
Confidence 999998876 58999999999999999999999999999865211 2335678999999999999999999999988 78
Q ss_pred eeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEec--ccchhhhcCCchhhhh
Q 037622 351 DFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG--PGTMKEYINNADATMS 428 (560)
Q Consensus 351 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~ 428 (560)
++++.||+||++..++..... ....++++|+|+|+++++++| +++.+++.|+.|||++++ ++++.||+++++.+..
T Consensus 350 ~i~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~ 427 (570)
T PRK04319 350 PIHDNWWMTETGGIMIANYPA-MDIKPGSMGKPLPGIEAAIVD-DQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYES 427 (570)
T ss_pred CeEeceeecccCCEEEecCCC-CCCCCCcCcCCCCCCEEEEEC-CCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhh
Confidence 999999999998765543222 234578999999999999999 577888999999999997 8999999999999998
Q ss_pred ccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCC
Q 037622 429 TIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDG 508 (560)
Q Consensus 429 ~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 508 (560)
.|. +|||+|||+++++++|.++++||.+|+|+.+|++|+|.+||+.+.++|.|.+++|++.+++..++.+++++++.++
T Consensus 428 ~~~-~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~ 506 (570)
T PRK04319 428 YFA-GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPG 506 (570)
T ss_pred hhc-CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCC
Confidence 884 8999999999999999999999999999999999999999999999999999999999999889999999998776
Q ss_pred CCCC---HHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHh
Q 037622 509 STLT---EAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLT 557 (560)
Q Consensus 509 ~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~ 557 (560)
.... .++++++++++|+.|++|+.++++++||+|++||++|++|++++.
T Consensus 507 ~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~ 558 (570)
T PRK04319 507 YEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWEL 558 (570)
T ss_pred CCCCHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHh
Confidence 4433 368999999999999999999999999999999999999999864
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=591.99 Aligned_cols=506 Identities=24% Similarity=0.282 Sum_probs=402.4
Q ss_pred CCCCCHHHHHhccCC--CCceEEEE---CC--CC--ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHH
Q 037622 39 DSLLDVDSFIFSHKH--NGRTALVD---SL--SG--YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVI 109 (560)
Q Consensus 39 ~~~~~~~~~~~~~~~--~~~~a~~~---~~--~~--~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~ 109 (560)
+...|+++++.+.++ ++++|+.. .. .+ +.+||+||.++++++|++|.+ +|+++||+|+|+++|+++|+++
T Consensus 41 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~-~Gv~~gd~Vai~~~n~~e~~~~ 119 (651)
T PLN02736 41 PEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQ-HGIPKGACVGLYFINRPEWLIV 119 (651)
T ss_pred CCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHH
Confidence 345789998887764 55888832 11 11 469999999999999999999 8999999999999999999999
Q ss_pred HHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC----C-CCEEEecCCCc--ccc---cCCC
Q 037622 110 FLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG----T-TPVVAVPENLV--NDF---KEGR 179 (560)
Q Consensus 110 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~----~-~~vi~~~~~~~--~~~---~~~~ 179 (560)
++||+++|++++|+++.++.+++.++++.+++ ++++++.+....+.... . ..++..+.... ... ....
T Consensus 120 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~--~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 197 (651)
T PLN02736 120 DHACSAYSYVSVPLYDTLGPDAVKFIVNHAEV--AAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVE 197 (651)
T ss_pred HHHHHHcCCeEEEeecCCCHHHHHHHHhccCC--CEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcE
Confidence 99999999999999999999999999999999 99999877655543321 1 22333321100 000 0111
Q ss_pred cccHHHhhcccCC-CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChh
Q 037622 180 FSDFHKLIAGKFD-LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMF 258 (560)
Q Consensus 180 ~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 258 (560)
...++++.+.... ........++++++|+|||||||.||||++||+++..++..... ...+.++|++++++|++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~-----~~~~~~~d~~l~~lPl~ 272 (651)
T PLN02736 198 IVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSL-----STKFYPSDVHISYLPLA 272 (651)
T ss_pred EEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHh-----ccCCCCCCEEEEeCCHH
Confidence 2345555443211 11223346799999999999999999999999999988877765 45678899999999999
Q ss_pred hHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhc----------------------
Q 037622 259 HIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKG---------------------- 316 (560)
Q Consensus 259 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~---------------------- 316 (560)
|.+++. .++.++..|+++++.+. ++..+++.++++++|+++++|.+++.+.+....
T Consensus 273 h~~~~~-~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (651)
T PLN02736 273 HIYERV-NQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQ 350 (651)
T ss_pred HHHHHH-HHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 999996 67788999999988764 788999999999999999999999887653100
Q ss_pred ------cCC------------CCC-CccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcc
Q 037622 317 ------LCG------------NSL-KSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKY 377 (560)
Q Consensus 317 ------~~~------------~~l-~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~ 377 (560)
... ..+ +++|.+++||+++++++.+++.+.+ ++++++.||+||+++.++.... .....
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~--~~~~~ 427 (651)
T PLN02736 351 ALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMTETSCVISGMDE--GDNLS 427 (651)
T ss_pred HHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHh-CCCeEEEechHHhchheeccCC--CCCCC
Confidence 000 011 4799999999999999999999888 7899999999999876654332 23467
Q ss_pred cccccccCCeEEEEEeCCCCc---cCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEc
Q 037622 378 FSVGLLAPNIQAKVVDWVNGC---FLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVD 454 (560)
Q Consensus 378 ~~~G~~~p~~~~~v~d~~~~~---~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~G 454 (560)
+++|+|+||++++++|.+++. ...++..|||+++||+++.||+++|+.|.+.|+.+|||+|||+|++|+||.++++|
T Consensus 428 ~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~G 507 (651)
T PLN02736 428 GHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIID 507 (651)
T ss_pred CccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEE
Confidence 899999999999999854332 22334579999999999999999999999999889999999999999999999999
Q ss_pred cccceeee-cceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCC--------CCCHHHHHHHHH----
Q 037622 455 RLKEVIKY-NGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS--------TLTEAAVIDYLA---- 521 (560)
Q Consensus 455 R~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~l~~~~~---- 521 (560)
|.||+||+ +|++|+|.+||++|.++|.|.+|+|++. ..++.++|+|++.++. ..+..++.++++
T Consensus 508 R~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (651)
T PLN02736 508 RKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRV 584 (651)
T ss_pred echhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHH
Confidence 99999998 7999999999999999999999999983 3466799999986421 122222333322
Q ss_pred --------------hccCCCCCcceEEEecCCC------CCCCCcchHHHHHHHHhccC
Q 037622 522 --------------QRVAPYKKVRRVVFTKSIP------KSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 522 --------------~~l~~~~~p~~i~~~~~lP------~t~~GKi~r~~L~~~~~~~~ 560 (560)
..|+.|++|++|+++++.| +|++||++|+++++.|.++|
T Consensus 585 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i 643 (651)
T PLN02736 585 RAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAI 643 (651)
T ss_pred HHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHH
Confidence 2599999999999999886 79999999999999988753
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-70 Score=577.93 Aligned_cols=507 Identities=28% Similarity=0.462 Sum_probs=419.0
Q ss_pred CCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 41 LLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 41 ~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
..|+.+.+.+.++ ++++|+++. ++.+||+||.++++++|..|.+..|+++||+|+|+++|++++++++|||+++|+
T Consensus 23 ~~~~~~~l~~~a~~~p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga 100 (562)
T PRK05677 23 YPNIQAVLKQSCQRFADKPAFSNL--GKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGL 100 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEEEC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCe
Confidence 3588888877664 569999986 789999999999999999998635999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC---CCCEEEecCC-Cccc--------------------
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG---TTPVVAVPEN-LVND-------------------- 174 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~---~~~vi~~~~~-~~~~-------------------- 174 (560)
+++|++|.++.+++.++++.+++ ++++++......+.+.. ..+.+.+.+. ....
T Consensus 101 ~~v~l~~~~~~~~l~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (562)
T PRK05677 101 IVVNTNPLYTAREMEHQFNDSGA--KALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPA 178 (562)
T ss_pred EEeecCCCCCHHHHHHHHhccCc--eEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccccc
Confidence 99999999999999999999999 99988766544332211 1222222110 0000
Q ss_pred ccCCCcccHHHhhcccC-CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCC-CCcEEE
Q 037622 175 FKEGRFSDFHKLIAGKF-DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLS-SEAVFL 252 (560)
Q Consensus 175 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 252 (560)
........+.+.+.... .........++++++++|||||||.||+|+++|.++........... ...+. ..++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~ 255 (562)
T PRK05677 179 YHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALM---GSNLNEGCEILI 255 (562)
T ss_pred cCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHh---ccCCCCCccEEE
Confidence 00011122233322211 11112234578999999999999999999999999987665544321 11223 346889
Q ss_pred EecChhhHHhHHHHHHHHhhCCCEEEEeC-CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecc
Q 037622 253 AVLPMFHIYGLSLFALGLLSLGPSVVVMR-RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSG 331 (560)
Q Consensus 253 ~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~ 331 (560)
+.+|++|.+++...++.++..|++.++.+ +.++..+++.++++++|+++++|+++..+... .......++++|.+++|
T Consensus 256 ~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~-~~~~~~~~~~lr~v~~g 334 (562)
T PRK05677 256 APLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNN-EAFRKLDFSALKLTLSG 334 (562)
T ss_pred EcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhC-cccccCChhhceEEEEc
Confidence 99999999998777778888888777665 57899999999999999999999999998865 33334456789999999
Q ss_pred cCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEe
Q 037622 332 AAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLR 411 (560)
Q Consensus 332 g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~ 411 (560)
|+++++++.+.|.+.+ ++++++.||+||++.++..... ...+++++|.|+|+++++++| +++++++.|+.|||+++
T Consensus 335 G~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~--~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~ 410 (562)
T PRK05677 335 GMALQLATAERWKEVT-GCAICEGYGMTETSPVVSVNPS--QAIQVGTIGIPVPSTLCKVID-DDGNELPLGEVGELCVK 410 (562)
T ss_pred CccCCHHHHHHHHHHc-CCCeeccCCccccCcceeecCc--cCCCCCccCccCCCCEEEEEC-CCCCCCCCCCCeEEEEe
Confidence 9999999999999988 8999999999999877665432 233567899999999999999 46889999999999999
Q ss_pred cccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEccc
Q 037622 412 GPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAM 491 (560)
Q Consensus 412 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~ 491 (560)
|+.++.||+++++.+.+.|+.+|||+|||+|+++++|.+++.||.+|+|+++|++|+|.+||++|.++|+|.+++|++++
T Consensus 411 g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~ 490 (562)
T PRK05677 411 GPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVP 490 (562)
T ss_pred cCccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEecc
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 492 DKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 492 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
++..++.+++++++.++...+.++++++++++|++|++|..++++++||+|++||++|++|++.+.+|
T Consensus 491 ~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~~~~ 558 (562)
T PRK05677 491 DEKSGEAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEELKK 558 (562)
T ss_pred CccCCceEEEEEEeCCCCCCCHHHHHHHHHHhhhhccCCcEEEEeccCCCCCcccccHHHHHHHHHHh
Confidence 98888899999988777677889999999999999999999999999999999999999999977655
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-69 Score=568.22 Aligned_cols=487 Identities=32% Similarity=0.459 Sum_probs=418.6
Q ss_pred CHHHHHhccC--CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeE
Q 037622 43 DVDSFIFSHK--HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIV 120 (560)
Q Consensus 43 ~~~~~~~~~~--~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 120 (560)
.+.+.+.+.+ +++++|++++ ++.+||+||.++++++|++|.+++|+++|++|+++++|+++++++++||+++|+++
T Consensus 3 ~~~~~~~~~a~~~p~~~a~~~~--~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~ 80 (496)
T PRK06839 3 GIAYWIEKRAYLHPDRIAIITE--EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIA 80 (496)
T ss_pred cHHHHHHHHHHHCCCCeEEEEC--CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 3445555555 4669999987 89999999999999999999764799999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC----CCEEEecCCCcccccCCCcccHHHhhcccCCCCCC
Q 037622 121 IPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT----TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVER 196 (560)
Q Consensus 121 v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (560)
+|+++.++.+++..+++.+++ +.+++++.....+..... ..++.+.+ +.+....... ..
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~--~~ 143 (496)
T PRK06839 81 VPLNIRLTENELIFQLKDSGT--TVLFVEKTFQNMALSMQKVSYVQRVISITS-------------LKEIEDRKID--NF 143 (496)
T ss_pred EecCcccCHHHHHHHHHhcCc--eEEEEcHHHHHHHHHhhhccCcceEEEecc-------------hHhhhccCCC--CC
Confidence 999999999999999999999 999988776555443321 12222221 1112111111 11
Q ss_pred CCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCE
Q 037622 197 PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPS 276 (560)
Q Consensus 197 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~ 276 (560)
....++++++++|||||||.||+|.++|.++......... ...+..+|+++..+|++|.+++....+.++..|++
T Consensus 144 ~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~ 218 (496)
T PRK06839 144 VEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTF-----AIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGV 218 (496)
T ss_pred CCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHH-----HcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcE
Confidence 2345689999999999999999999999998765544433 35678899999999999999987777889999999
Q ss_pred EEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeeccc
Q 037622 277 VVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGY 356 (560)
Q Consensus 277 ~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~Y 356 (560)
+++.+.+++..+++.++++++|++.++|++++.+++. ......+++++|.+++||+++++++.+.+.+. ++++.+.|
T Consensus 219 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~Y 295 (496)
T PRK06839 219 IIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINC-SKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGF 295 (496)
T ss_pred EEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhC-cccccCCCcccceEEECCCCCCHHHHHHHHHh--CCeeEeec
Confidence 9999889999999999999999999999999999876 34445677899999999999999999999986 89999999
Q ss_pred chhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCce
Q 037622 357 GMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWL 436 (560)
Q Consensus 357 G~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~ 436 (560)
|+||++..++.........+.+++|+|+++++++++|+ +++.++.|+.|||+|+|+.++.||+++++.+...+ .+|||
T Consensus 296 G~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~ 373 (496)
T PRK06839 296 GMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDE-NKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWL 373 (496)
T ss_pred cCCCCCcceEecccccccccCCCCcccCCCceEEEECC-CcCCCCCCCceEEEEECCCcchhhcCChHHHHHHH-cCCCe
Confidence 99999976544333333346789999999999999994 56679999999999999999999999999998877 58999
Q ss_pred ecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHH
Q 037622 437 HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAV 516 (560)
Q Consensus 437 ~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 516 (560)
+|||+++++++|.+++.||.+|+|+.+|.+|+|.+||+++.++|+|.+++|++.+++..++.++++|++.++...+.+++
T Consensus 374 ~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l 453 (496)
T PRK06839 374 CTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDV 453 (496)
T ss_pred eecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998999999999988777888999
Q ss_pred HHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 517 IDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 517 ~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
++++++.|+++++|..+++++++|+|++||++|++|+++.++
T Consensus 454 ~~~~~~~l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 454 IEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKS 495 (496)
T ss_pred HHHHHhhCcCCCCCcEEEEeccCCCCccccccHHHHHHHhhc
Confidence 999999999999999999999999999999999999998764
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-69 Score=572.45 Aligned_cols=502 Identities=30% Similarity=0.456 Sum_probs=426.1
Q ss_pred CCHHHHHhccC--CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhh-CCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 42 LDVDSFIFSHK--HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHF-GISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 42 ~~~~~~~~~~~--~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~-g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
.|+.+.+.+.+ .++++|+++. ++++||+||.+++.++|..|.+ . |+++|++|+|+++|+++++++++||+++|+
T Consensus 10 ~tl~~~l~~~a~~~~~~~a~~~~--~~~~Ty~~l~~~v~~~a~~L~~-~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 86 (546)
T PRK08314 10 TSLFHNLEVSARRYPDKTAIVFY--GRAISYRELLEEAERLAGYLQQ-ECGVRKGDRVLLYMQNSPQFVIAYYAILRANA 86 (546)
T ss_pred CCHHHHHHHHHHHcCCCcceeec--CceecHHHHHHHHHHHHHHHHH-hhCCCCCCEEEEECCCChHHHHHHHHHHHcCc
Confidence 67888887655 3568999987 7899999999999999999998 7 999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC----CCEEEecCCC--cc-----------------cc
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT----TPVVAVPENL--VN-----------------DF 175 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~----~~vi~~~~~~--~~-----------------~~ 175 (560)
+++|++|.++.+++.++++.+++ +++++++.....+..... ..++...... .+ ..
T Consensus 87 ~~v~l~~~~~~~~l~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (546)
T PRK08314 87 VVVPVNPMNREEELAHYVTDSGA--RVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQAL 164 (546)
T ss_pred EEeecCcCcCHHHHHHHHHhCCC--eEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCcccccccccccccc
Confidence 99999999999999999999999 999998876665543211 1122211000 00 00
Q ss_pred cCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEec
Q 037622 176 KEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVL 255 (560)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (560)
...++..+++...... ........++++++++|||||||.||+|.++|.+++..+..... ...+...|++++.+
T Consensus 165 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~-----~~~~~~~d~~l~~~ 238 (546)
T PRK08314 165 APGGVVAWKEALAAGL-APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVL-----WSNSTPESVVLAVL 238 (546)
T ss_pred cccccccHHHHhcccC-CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHH-----hhCCCCCceEEEEc
Confidence 0112233444433221 11223456789999999999999999999999999988877665 45678899999999
Q ss_pred ChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCC
Q 037622 256 PMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPA 335 (560)
Q Consensus 256 p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~ 335 (560)
|++|.+|+...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+... .......++++|.+++||+++
T Consensus 239 p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~-~~~~~~~~~~l~~~~~gG~~~ 317 (546)
T PRK08314 239 PLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLAS-PGLAERDLSSLRYIGGGGAAM 317 (546)
T ss_pred CchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhC-CCccccCchhhheeeeccccC
Confidence 9999999987888999999999999999999999999999999999999999998865 333445678899999999999
Q ss_pred CHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccc
Q 037622 336 NSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGT 415 (560)
Q Consensus 336 ~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~ 415 (560)
++++.+++.+.+ +.++++.||+||++..+...... ....+++|.|+|+++++++|++++++++.|+.|||+++|+++
T Consensus 318 ~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~ 394 (546)
T PRK08314 318 PEAVAERLKELT-GLDYVEGYGLTETMAQTHSNPPD--RPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQV 394 (546)
T ss_pred CHHHHHHHHHHc-CCcEEecccccccccceecCCCc--CCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCch
Confidence 999999999998 79999999999998766544322 234678999999999999998889999999999999999999
Q ss_pred hhhhcCCchhhhhccC---CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccC
Q 037622 416 MKEYINNADATMSTID---KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMD 492 (560)
Q Consensus 416 ~~gy~~~~~~~~~~~~---~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~ 492 (560)
+.||+++++.+...|. +.+||+|||+|+++++|.+++.||.||+|+++|++|+|.+||+++.++|+|.+++|++.++
T Consensus 395 ~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~ 474 (546)
T PRK08314 395 FKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPD 474 (546)
T ss_pred hccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCC
Confidence 9999999999887763 3469999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEecCCC--CCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 493 KVLGEIPVAFVVRRDGS--TLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 493 ~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
...++.+++++++.++. ..+.++++++|+++|+++++|..++++++||+|.+||++|++|++....
T Consensus 475 ~~~~~~~~a~v~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~~~~ 542 (546)
T PRK08314 475 PRRGETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEKA 542 (546)
T ss_pred cccCceeEEEEEECCCCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHhh
Confidence 88889999999987653 3456899999999999999999999999999999999999999887543
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-69 Score=574.76 Aligned_cols=507 Identities=30% Similarity=0.433 Sum_probs=425.6
Q ss_pred CCHHHHHhccC--CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHK--HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~--~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.+++.+++ .++++|+++. ++.+||.||.++++++|+.|.+ +|+++||+|+++++|+++++++++||+++|++
T Consensus 32 ~~l~~~~~~~~~~~p~~~a~~~~--~~~~Ty~ql~~~~~~~A~~L~~-~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 108 (573)
T PRK05605 32 TTLVDLYDNAVARFGDRPALDFF--GATTTYAELGKQVRRAAAGLRA-LGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAV 108 (573)
T ss_pred CCHHHHHHHHHHHCCCCeEEEeC--CCcccHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHhcCcE
Confidence 57888887655 4669999886 7899999999999999999999 89999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC----CCEEEecCCCcc----c-----------------
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT----TPVVAVPENLVN----D----------------- 174 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~----~~vi~~~~~~~~----~----------------- 174 (560)
++|++|.++.+++.++++.+++ +++++++.....+..... ..++.++..... .
T Consensus 109 ~v~l~~~~~~~~l~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (573)
T PRK05605 109 VVEHNPLYTAHELEHPFEDHGA--RVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAAL 186 (573)
T ss_pred EeecCcCCCHHHHHHHHhccCC--cEEEechhhHHHHHhhhhccccceeEeeeccccccccccccccccccccccccccc
Confidence 9999999999999999999999 999987765544432211 122222210000 0
Q ss_pred -ccCCCcccHHHhhcccCCC----CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCc
Q 037622 175 -FKEGRFSDFHKLIAGKFDL----VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEA 249 (560)
Q Consensus 175 -~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (560)
....+...+.++....... .......++++++++|||||||.||+|.++|.++...+.....+. .......+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~ 263 (573)
T PRK05605 187 TGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWV---PGLGDGPE 263 (573)
T ss_pred ccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhc---cccCCCCc
Confidence 0011223344443322111 122334678999999999999999999999999987766543311 11123478
Q ss_pred EEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceee
Q 037622 250 VFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVS 329 (560)
Q Consensus 250 ~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~ 329 (560)
++++..|++|.+|+...+..++..|+++++.+.+++..+++.++++++|++.++|++++.|.+. .......++++|.++
T Consensus 264 ~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~i~ 342 (573)
T PRK05605 264 RVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEA-AEERGVDLSGVRNAF 342 (573)
T ss_pred EEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhC-ccccCCCchhccEEE
Confidence 9999999999999877788889999999999888999999999999999999999999999876 334455678999999
Q ss_pred cccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCC-CccCCCCCcceE
Q 037622 330 SGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVN-GCFLPPGSTGEL 408 (560)
Q Consensus 330 ~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~-~~~~~~g~~Gel 408 (560)
+||+++++++.+.+.+.+ +.++++.||+||+++++...... ....++++|.|+|++.++|+|+++ +.+++.|+.|||
T Consensus 343 ~gg~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel 420 (573)
T PRK05605 343 SGAMALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPMS-DDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGEL 420 (573)
T ss_pred ECCCcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCcc-cCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEE
Confidence 999999999999999888 78999999999999876654322 233567899999999999999766 689999999999
Q ss_pred EEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEE
Q 037622 409 WLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVT 488 (560)
Q Consensus 409 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~ 488 (560)
+++|+.++.||+++++.+...| .+|||+|||+++++++|.+++.||.||+++.+|++|+|.+||+++.+++.|.+++|+
T Consensus 421 ~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~ 499 (573)
T PRK05605 421 LVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVV 499 (573)
T ss_pred EEecCchhhhhcCChhHhhhcc-cCCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEE
Confidence 9999999999999999998888 467999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhccC
Q 037622 489 GAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 489 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~ 560 (560)
+.++...++.+++++++.++...+.++++++++++|+.+++|..++++++||+|.+||++|++|++++.+++
T Consensus 500 ~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~~~~~ 571 (573)
T PRK05605 500 GLPREDGSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRRREVREELLEKL 571 (573)
T ss_pred eeecccCCeEEEEEEEECCCCCCCHHHHHHHHHHhCccccCCcEEEEeccCCCCCcccccHHHHHHHHHHHh
Confidence 999888888999999988877778899999999999999999999999999999999999999999987753
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-69 Score=566.99 Aligned_cols=500 Identities=31% Similarity=0.501 Sum_probs=430.1
Q ss_pred CCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 41 LLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 41 ~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
..++.+.|.+.++ ++++|+++. ++++||+||.+.+.++|..|.+ .|+++||+|+++++|+++++++++||+++|+
T Consensus 4 ~~~i~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~ 80 (513)
T PRK07656 4 WMTLPELLARAARRFGDKEAYVFG--DQRLTYAELNARVRRAAAALAA-LGIGKGDRVAIWAPNSPHWVIAALGALKAGA 80 (513)
T ss_pred cccHHHHHHHHHHHCCCCeEEEeC--CCceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHhcCe
Confidence 4678888776554 569999997 7899999999999999999998 7999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC----C-CCEEEecCCCcccccCCCcccHHHhhcccCCC
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG----T-TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDL 193 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~----~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (560)
+++|+++.++.+++..+++.+++ +++++++.......... . ..++....... .........+.++.......
T Consensus 81 ~~v~l~~~~~~~~~~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 157 (513)
T PRK07656 81 VVVPLNTRYTADEAAYILARGDA--KALFVLGLFLGVDYSATTRLPALEHVVICETEED-DPHTEKMKTFTDFLAAGDPA 157 (513)
T ss_pred EEEecCcccCHHHHHHHHhhcCc--eEEEEchhhHHHHHHHHhccCCccEEEEEcCccc-ccCccccccHHHHHhcCCCC
Confidence 99999999999999999999999 99998877655443221 1 22222222211 10111223455554433222
Q ss_pred CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhC
Q 037622 194 VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSL 273 (560)
Q Consensus 194 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~ 273 (560)
.......++++++++|||||||.||+|.++|.++...+..... ...+.+++++++..|++|.+++...++.++..
T Consensus 158 ~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (513)
T PRK07656 158 ERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAE-----YLGLTEGDRYLAANPFFHVFGYKAGVNAPLMR 232 (513)
T ss_pred CCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHH-----hhCCCCCCeEEEccchHHHHHHHHHHHHHHHc
Confidence 2334457789999999999999999999999999887776655 46788999999999999999998788999999
Q ss_pred CCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCC-ee
Q 037622 274 GPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHV-DF 352 (560)
Q Consensus 274 G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~-~i 352 (560)
|+++++.+.+++..+++.++++++|++.++|+++..+.+. .......++++|.+++||+++++++.+.+.+.+ +. .+
T Consensus 233 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~-~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~ 310 (513)
T PRK07656 233 GATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQH-PDRSAEDLSSLRLAVTGAASMPVALLERFESEL-GVDIV 310 (513)
T ss_pred CceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcC-CCcCCCCccceeeEEecCCCCCHHHHHHHHHHc-CCCce
Confidence 9999998888999999999999999999999999999876 334445778999999999999999999999999 56 89
Q ss_pred ecccchhhcccccccCCCCCC-CCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccC
Q 037622 353 IQGYGMTESTAVGTRGFNTKK-FSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID 431 (560)
Q Consensus 353 ~~~YG~tE~~~~~~~~~~~~~-~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~ 431 (560)
++.||+||++++++.+..... ...++++|.|+++++++++| +++++++.|+.|||+++|+.++.||++++..+...+.
T Consensus 311 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~ 389 (513)
T PRK07656 311 LTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAID 389 (513)
T ss_pred EeEEccccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhc
Confidence 999999999887766543321 12267899999999999999 5789999999999999999999999999999998887
Q ss_pred CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCC
Q 037622 432 KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTL 511 (560)
Q Consensus 432 ~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 511 (560)
.++||+|||+|+++++|.+++.||.+|+++++|.++++.+||++|.++++|.+++|++.+++..|+.++++++..++...
T Consensus 390 ~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~ 469 (513)
T PRK07656 390 ADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAEL 469 (513)
T ss_pred cCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999988888999999998876678
Q ss_pred CHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHH
Q 037622 512 TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554 (560)
Q Consensus 512 ~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~ 554 (560)
+.+++++++++.|+++++|..++++++||+|++||++|++|++
T Consensus 470 ~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 470 TEEELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE 512 (513)
T ss_pred CHHHHHHHHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence 8899999999999999999999999999999999999999985
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-69 Score=566.98 Aligned_cols=506 Identities=27% Similarity=0.402 Sum_probs=434.5
Q ss_pred CCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 41 LLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 41 ~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
..++.+++...++ ++++|+++. ++.+||+||++++.++|..|.+ .|+++|++|+++++|+++++++++||+++|+
T Consensus 10 ~~~l~~~l~~~a~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~ 86 (523)
T PRK08316 10 RQTIGDILRRSARRYPDKTALVFG--DRSWTYAELDAAVNRVAAALLD-LGLKKGDRVAALGHNSDAYALLWLACARAGA 86 (523)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHhcCc
Confidence 3678888876654 568999987 7999999999999999999999 7999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC---CCEEEecCCCcccccCCCcccHHHhhcccCCCCC
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT---TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVE 195 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (560)
+++|+++.++.+++.++++.+++ ++++++......+.+... ...+.................+.+..........
T Consensus 87 ~~v~l~~~~~~~~i~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (523)
T PRK08316 87 VHVPVNFMLTGEELAYILDHSGA--RAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFADWAEAGSVAEP 164 (523)
T ss_pred EEEecccccCHHHHHHHHHhCCC--CEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhHHHHHhcCCCccC
Confidence 99999999999999999999999 989988876655543211 1111111100001112233444444443333223
Q ss_pred CCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCC
Q 037622 196 RPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGP 275 (560)
Q Consensus 196 ~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~ 275 (560)
......+++++++|||||||.||+|.++|.++......... ...+.++++++..+|++|..++...+..++..|+
T Consensus 165 ~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~-----~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~ 239 (523)
T PRK08316 165 DVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIV-----AGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGA 239 (523)
T ss_pred ccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHH-----HhCCCCCceEEEccCCchhhhHHHHHHHHHhcCc
Confidence 34567789999999999999999999999999887666554 4568899999999999999998766777889999
Q ss_pred EEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecc
Q 037622 276 SVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQG 355 (560)
Q Consensus 276 ~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 355 (560)
++++.+..++..+++.++++++|++.++|+++..+.+. .......++++|.+++||+.++.++.+.+.+.+++.++++.
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 318 (523)
T PRK08316 240 TNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRH-PDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNC 318 (523)
T ss_pred eEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcC-cccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeee
Confidence 99999888999999999999999999999999999876 33445677899999999999999999999999988999999
Q ss_pred cchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCc
Q 037622 356 YGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGW 435 (560)
Q Consensus 356 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 435 (560)
||+||++.+++...........+++|+|+++++++++| +++++++.|+.|||+++|++++.||+++++.+...| .++|
T Consensus 319 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~ 396 (523)
T PRK08316 319 YGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGW 396 (523)
T ss_pred ecccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHh-hCCC
Confidence 99999998776654333334568899999999999999 568999999999999999999999999999998888 6899
Q ss_pred eecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHH
Q 037622 436 LHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAA 515 (560)
Q Consensus 436 ~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 515 (560)
|+|||+|++++||.+++.||.+|+|+.+|++|+|.+||+.+.++++|.+++|++.+++..++.+++++++.++...+.++
T Consensus 397 ~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 476 (523)
T PRK08316 397 FHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDE 476 (523)
T ss_pred eeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999998889999999988776677889
Q ss_pred HHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 516 VIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 516 l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+.++++++|+++++|..+++++++|+|++||++|++|+++|.+.
T Consensus 477 l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~ 520 (523)
T PRK08316 477 LIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGA 520 (523)
T ss_pred HHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999764
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-69 Score=587.08 Aligned_cols=476 Identities=24% Similarity=0.334 Sum_probs=402.6
Q ss_pred CHHHHHhccCC----CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 43 DVDSFIFSHKH----NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 43 ~~~~~~~~~~~----~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
|+.+++.++++ ++++|+++. ..+||+||+++++++|++|.+ .|+++|++|+|+++|+++++++++||+++|+
T Consensus 5 ~~~~~~~~~a~~~~~pd~~a~~~~---~~~Ty~eL~~~~~~lA~~L~~-~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~ 80 (705)
T PRK06060 5 NLAGLLAEQASEAGWYDRPAFYAA---DVVTHGQIHDGAARLGEVLRN-RGLSSGDRVLLCLPDSPDLVQLLLACLARGV 80 (705)
T ss_pred CHHHHHHHHHhhccCCCceEEEec---CceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 67777776553 579999874 479999999999999999999 7999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhccc--CCCCCC
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGK--FDLVER 196 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 196 (560)
+++|++|.++.+++.++++.+++ ++++++......+... .++. ........ ......
T Consensus 81 ~~vpi~p~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~---~~~~----------------~~~~~~~~~~~~~~~~ 139 (705)
T PRK06060 81 MAFLANPELHRDDHALAARNTEP--ALVVTSDALRDRFQPS---RVAE----------------AAELMSEAARVAPGGY 139 (705)
T ss_pred EEEecCCCCCHHHHHHHHhcCCC--cEEEEchHHhhhhccc---ccch----------------hhhhhhhccccCCCCC
Confidence 99999999999999999999999 8998876544333210 0000 00010000 001111
Q ss_pred CCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCE
Q 037622 197 PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPS 276 (560)
Q Consensus 197 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~ 276 (560)
....++++++++|||||||.||+|+++|.++...+..+... ...+.+.+++++..|++|..++...++.++..|++
T Consensus 140 ~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~ 215 (705)
T PRK06060 140 EPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRK----ALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGS 215 (705)
T ss_pred CCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHH----hhCCCCcceeEEeccchhhcchhHHHHHHHhcCCE
Confidence 23456899999999999999999999999998877655321 34578899999999999998886678889999999
Q ss_pred EEEeC-CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecc
Q 037622 277 VVVMR-RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQG 355 (560)
Q Consensus 277 ~v~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 355 (560)
+++.+ .+++..++..++++++|+++++|+++..+++.. ....++++|.+++|||++++++.+++.+.|+++++++.
T Consensus 216 ~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~---~~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~ 292 (705)
T PRK06060 216 AVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSC---SPDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDG 292 (705)
T ss_pred EEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhc---ccccccceeEEEEecCcCCHHHHHHHHHHcCCCceEee
Confidence 99887 478888999999999999999999999998642 23457899999999999999999999999978999999
Q ss_pred cchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCc
Q 037622 356 YGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGW 435 (560)
Q Consensus 356 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 435 (560)
||+||++.++..... .....+++|+|+++++++++| +++++++.|+.|||+|+|++++.||+++|+.+. ..++|
T Consensus 293 YG~tE~~~~~~~~~~--~~~~~~~iG~p~~~~~v~i~d-~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~ 366 (705)
T PRK06060 293 IGSTEVGQTFVSNRV--DEWRLGTLGRVLPPYEIRVVA-PDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPV---ANEGW 366 (705)
T ss_pred eeccccCceEEeccC--CCCCcCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEccchhhhhhhCCCcccc---cCCCc
Confidence 999999866543322 123567899999999999999 568899999999999999999999999998753 35799
Q ss_pred eecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCH--
Q 037622 436 LHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTE-- 513 (560)
Q Consensus 436 ~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~-- 513 (560)
|+|||+|++++||+++++||.||+||++|++|++.|||++|.++|.|.+++|++.++...++.+++++++..+...+.
T Consensus 367 ~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~ 446 (705)
T PRK06060 367 LDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSV 446 (705)
T ss_pred EECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHH
Confidence 999999999999999999999999999999999999999999999999999999998888888999999876544433
Q ss_pred -HHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHH
Q 037622 514 -AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFL 556 (560)
Q Consensus 514 -~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~ 556 (560)
++++++++++|+.|++|..|+++++||+|++||++|++|++.+
T Consensus 447 ~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~ 490 (705)
T PRK06060 447 MRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS 490 (705)
T ss_pred HHHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence 5788999999999999999999999999999999999999865
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-68 Score=562.42 Aligned_cols=493 Identities=29% Similarity=0.430 Sum_probs=420.2
Q ss_pred CCHHHHHhccC--CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHK--HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~--~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
+++.+++.+++ .++++|+++. ++++||.||.+++.++|.+|.+ .|+++|++|+++++|+++++++++||+++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~--~~~~ty~el~~~v~~~a~~L~~-~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~ 78 (497)
T PRK06145 2 FNLSASIAFHARRTPDRAALVYR--DQEISYAEFHQRILQAAGMLHA-RGIGQGDVVALLMKNSAAFLELAFAASYLGAV 78 (497)
T ss_pred ccHHHHHHHHHHHCCCceEEEEC--CcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHhcCcE
Confidence 56777777776 4668999987 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVI 199 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (560)
++|+++.++.+++.++++.+++ ++++++++........ ...+.++.... .....+.............
T Consensus 79 ~v~l~~~~~~~~~~~~l~~~~~--~~~i~~~~~~~~~~~~--~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 146 (497)
T PRK06145 79 FLPINYRLAADEVAYILGDAGA--KLLLVDEEFDAIVALE--TPKIVIDAAAQ--------ADSRRLAQGGLEIPPQAAV 146 (497)
T ss_pred EEecccccCHHHHHHHHHhcCC--cEEEEccchhhhhhcc--cceEEecCccc--------chhHHHhccCCCCCCCCCC
Confidence 9999999999999999999999 8888876654332211 12222221100 0111111111111112234
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.++++++++|||||||.||+|+++|.++...+..... ...+..+++++...|++|.+++....+.++..|+++++
T Consensus 147 ~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~ 221 (497)
T PRK06145 147 APTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVI-----ALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRI 221 (497)
T ss_pred CccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHH-----hhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEE
Confidence 6789999999999999999999999998865544433 35678899999999999999987667788999999999
Q ss_pred eCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchh
Q 037622 280 MRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMT 359 (560)
Q Consensus 280 ~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~t 359 (560)
.+.+++..+++.++++++|.+.++|+++..++.. .......++++|.+++||+++++.+.+.+.+.|++.++++.||+|
T Consensus 222 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~-~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~t 300 (497)
T PRK06145 222 HREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTV-PDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLT 300 (497)
T ss_pred CCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcC-CCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCc
Confidence 9889999999999999999999999999999875 333345678899999999999999999999999889999999999
Q ss_pred hcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecC
Q 037622 360 ESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTG 439 (560)
Q Consensus 360 E~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TG 439 (560)
|++..++...........+++|+|+|+++++++| +++++++.|+.|||+++|++++.||+++++.+...| .++||+||
T Consensus 301 E~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TG 378 (497)
T PRK06145 301 ETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSG 378 (497)
T ss_pred ccCCcceeccCccccccCCCcccCCCCceEEEEC-CCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHH-hCCCeecc
Confidence 9998655433322233567899999999999999 578899999999999999999999999999998888 57999999
Q ss_pred ceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHH
Q 037622 440 DIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDY 519 (560)
Q Consensus 440 D~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 519 (560)
|+++++++|.++++||.||+||.+|+++++.+||++|.++|+|.+++|++.+++..++.+++++++......+.+++.++
T Consensus 379 Dl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 458 (497)
T PRK06145 379 DVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRH 458 (497)
T ss_pred ceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888999999887666788999999
Q ss_pred HHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHh
Q 037622 520 LAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLT 557 (560)
Q Consensus 520 ~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~ 557 (560)
++++|++++.|..++++++||+|++||++|++|++++.
T Consensus 459 ~~~~l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 459 CRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred HHHhhhcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence 99999999999999999999999999999999999875
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-69 Score=567.76 Aligned_cols=486 Identities=24% Similarity=0.340 Sum_probs=410.4
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.++.++|.++++ ++++|+++. ++++||+||.++++++|++|.+ +|+++|++|+++++|+++++++++||+++|++
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~A~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 119 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLIDE--LGTLTWRELDERSDALAAALQA-LPIGEPRVVGIMCRNHRGFVEALLAANRIGAD 119 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEeC--CCeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCcHHHHHHHHHHHHcCcE
Confidence 578888877664 569999986 6799999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC-----CCEEEecCCCcccccCCCcccHHHhhcccCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-----TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLV 194 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (560)
++|+++.++.+++.++++.+++ ++++++......+..... ..++.+.+.. ....++.+.......
T Consensus 120 ~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~- 189 (537)
T PRK13382 120 ILLLNTSFAGPALAEVVTREGV--DTVIYDEEFSATVDRALADCPQATRIVAWTDED-------HDLTVEVLIAAHAGQ- 189 (537)
T ss_pred EEecCcccCHHHHHHHHHhcCC--CEEEEchhhHHHHHHHHhhccccceEEEecCCc-------ccccHHHHhhccCcC-
Confidence 9999999999999999999999 999988765544432210 1122222110 112233333221111
Q ss_pred CCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCC
Q 037622 195 ERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLG 274 (560)
Q Consensus 195 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G 274 (560)
.+...+++.++++|||||||.||+|+++|.++......... ...+..+++++...|++|.+++ ..++.++..|
T Consensus 190 -~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~-----~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~g 262 (537)
T PRK13382 190 -RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILD-----RTPWRAEEPTVIVAPMFHAWGF-SQLVLAASLA 262 (537)
T ss_pred -CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHH-----hhCCCCCCeEEEecChHhhhHH-HHHHHHHhcC
Confidence 11234678899999999999999999999888777666554 3456788999999999999998 4788889999
Q ss_pred CEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeee
Q 037622 275 PSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFI 353 (560)
Q Consensus 275 ~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~ 353 (560)
+++++...+++..+++.++++++|++.++|++++.|++.... ....+++++|.+++||+++++++++.|.+.+ +.+++
T Consensus 263 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~ 341 (537)
T PRK13382 263 CTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQF-GDVIY 341 (537)
T ss_pred cEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHc-CCcEE
Confidence 999998889999999999999999999999999999765211 1233557899999999999999999999999 67899
Q ss_pred cccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCC
Q 037622 354 QGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKE 433 (560)
Q Consensus 354 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 433 (560)
+.||+||++.+++.+... ....++++|+|++++.++++| +++++++.|+.|||+++|++++.||+ ++.+.. + .+
T Consensus 342 ~~YG~TE~~~~~~~~~~~-~~~~~~~vG~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~-~~ 415 (537)
T PRK13382 342 NNYNATEAGMIATATPAD-LRAAPDTAGRPAEGTEIRILD-QDFREVPTGEVGTIFVRNDTQFDGYT--SGSTKD-F-HD 415 (537)
T ss_pred ecccccccCcceecChhH-hccCCCCccccCcCcEEEEEC-CCCCCCCCCCeeEEEEEcCCcccCcc--ccchhh-c-cC
Confidence 999999999776644322 234578999999999999999 57899999999999999999999998 444443 3 37
Q ss_pred CceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCH
Q 037622 434 GWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTE 513 (560)
Q Consensus 434 ~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 513 (560)
|||+|||+++++++|++++.||.||+||.+|++|++.+||+.|.++|+|.+++|++.+++..|+.++++|++.++.....
T Consensus 416 g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~ 495 (537)
T PRK13382 416 GFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATP 495 (537)
T ss_pred CCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999888899999999887766778
Q ss_pred HHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHH
Q 037622 514 AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554 (560)
Q Consensus 514 ~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~ 554 (560)
++++++++++|+.+++|..+++++++|+|++||++|++|++
T Consensus 496 ~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 496 ETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQA 536 (537)
T ss_pred HHHHHHHHHhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence 89999999999999999999999999999999999999975
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-69 Score=571.03 Aligned_cols=496 Identities=23% Similarity=0.377 Sum_probs=397.9
Q ss_pred CCHHHHHhccCC--CCceEEEECCCC--------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHH
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSG--------YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~--------~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~l 111 (560)
+|+.+++.+.++ ++++|+++...+ +++||+||.++++++|.+|.+ +|+++||+|+++++|+++++++++
T Consensus 6 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~-~g~~~gd~V~~~~~n~~~~~~~~l 84 (552)
T PRK09274 6 ANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNA-AGIGRGMRAVLMVTPSLEFFALTF 84 (552)
T ss_pred hhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCcHHHHHHHH
Confidence 677777776553 568999875322 289999999999999999999 899999999999999999999999
Q ss_pred HHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeecc--chHHhhhcC---CCCEEEecCCCcccccCCCcccHHHh
Q 037622 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYE--NVDKLRSWG---TTPVVAVPENLVNDFKEGRFSDFHKL 186 (560)
Q Consensus 112 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~--~~~~~~~~~---~~~vi~~~~~~~~~~~~~~~~~~~~~ 186 (560)
||+++|++++|++|.++.+++.++++.+++ +++++++. ....+.... ...++.++... ......+.++
T Consensus 85 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~ 157 (552)
T PRK09274 85 ALFKAGAVPVLVDPGMGIKNLKQCLAEAQP--DAFIGIPKAHLARRLFGWGKPSVRRLVTVGGRL-----LWGGTTLATL 157 (552)
T ss_pred HHHHcCeEEEEcCCCccHHHHHHHHHhcCC--CEEEeccHHHHHHHHhccCccchhheecccccc-----ccCCccHHHh
Confidence 999999999999999999999999999999 88887642 222222111 11222222110 0111233333
Q ss_pred hccc-CCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHH
Q 037622 187 IAGK-FDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSL 265 (560)
Q Consensus 187 ~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~ 265 (560)
.... ..........++++++++|||||||.||+|+++|.++...+..... ...+.++++.++.+|++|.+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~-----~~~~~~~~~~~~~~pl~~~~~~-- 230 (552)
T PRK09274 158 LRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALRE-----DYGIEPGEIDLPTFPLFALFGP-- 230 (552)
T ss_pred cccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHH-----HhCCCCCceeeeccCHHHhhhh--
Confidence 3111 1112223446789999999999999999999999999988777665 4567889999999999876543
Q ss_pred HHHHHhhCCCEEEEeC-------CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHH
Q 037622 266 FALGLLSLGPSVVVMR-------RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSK 338 (560)
Q Consensus 266 ~~~~~l~~G~~~v~~~-------~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~ 338 (560)
..|+++++.+ .+++..+++.++++++|+++++|++++.|.+. ......+++++|.+++||++++++
T Consensus 231 ------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~gG~~~~~~ 303 (552)
T PRK09274 231 ------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRY-GEANGIKLPSLRRVISAGAPVPIA 303 (552)
T ss_pred ------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHH-hhhcCCCCchhhEEEecCCcCCHH
Confidence 3577777654 36789999999999999999999999999876 333456788999999999999999
Q ss_pred HHHHHHHhCC-CCeeecccchhhcccccccCCCC------C--CCCcccccccccCCeEEEEEeCC--------CCccCC
Q 037622 339 IIEDFVGAFP-HVDFIQGYGMTESTAVGTRGFNT------K--KFSKYFSVGLLAPNIQAKVVDWV--------NGCFLP 401 (560)
Q Consensus 339 ~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~------~--~~~~~~~~G~~~p~~~~~v~d~~--------~~~~~~ 401 (560)
+.+++.+.|+ ++++++.||+||++.+++..... . ......++|+|+|+++++|+|++ ++++++
T Consensus 304 ~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~ 383 (552)
T PRK09274 304 VIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLA 383 (552)
T ss_pred HHHHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCC
Confidence 9999999996 47999999999998765533211 0 01123478999999999999953 467899
Q ss_pred CCCcceEEEecccchhhhcCCchhhhhcc--CCCC--ceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHh
Q 037622 402 PGSTGELWLRGPGTMKEYINNADATMSTI--DKEG--WLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLI 477 (560)
Q Consensus 402 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~--~~~~--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~ 477 (560)
.|+.|||+++|++++.||+++|+.+...+ +.+| ||+|||+|++|+||+++++||.||+||++|++|+|.+||++|.
T Consensus 384 ~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~ 463 (552)
T PRK09274 384 TGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFN 463 (552)
T ss_pred CCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHH
Confidence 99999999999999999999999998765 3456 9999999999999999999999999999999999999999999
Q ss_pred cCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCC---CCcceEEEecCCCCC--CCCcchHHHH
Q 037622 478 CHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPY---KKVRRVVFTKSIPKS--AAGKVLRREL 552 (560)
Q Consensus 478 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~---~~p~~i~~~~~lP~t--~~GKi~r~~L 552 (560)
+||+|.+++|++.+++. ++.++++|++.++...+.+++++.+++.+..+ +.|+.++++++||+| ++|||+|++|
T Consensus 464 ~~p~V~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L 542 (552)
T PRK09274 464 THPGVKRSALVGVGVPG-AQRPVLCVELEPGVACSKSALYQELRALAAAHPHTAGIERFLIHPSFPVDIRHNAKIFREKL 542 (552)
T ss_pred hCcccceeEEEEeCCCC-CceEEEEEEccCccccchHHHhhhhHHHHHhcCCCcceeEEeccCCCCccccccccccHHHH
Confidence 99999999999998764 56788888888776666666777776665544 567789999999999 7999999999
Q ss_pred HHHHhccC
Q 037622 553 RKFLTSKL 560 (560)
Q Consensus 553 ~~~~~~~~ 560 (560)
++++.+++
T Consensus 543 ~~~~~~~~ 550 (552)
T PRK09274 543 AVWAAKQL 550 (552)
T ss_pred HHHHHHhh
Confidence 99988753
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=559.57 Aligned_cols=479 Identities=22% Similarity=0.351 Sum_probs=406.2
Q ss_pred CHHHHHhccC--CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeE
Q 037622 43 DVDSFIFSHK--HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIV 120 (560)
Q Consensus 43 ~~~~~~~~~~--~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 120 (560)
++.+.|.+++ .++++|+++. +.++||.||.++++++|.+|.+ .|. +|++|+|+++|+++++++++||+++|+++
T Consensus 2 ~~~~~~~~~a~~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~ 77 (487)
T PRK07638 2 GITKEYKKHASLQPNKIAIKEN--DRVLTYKDWFESVCKVANWLNE-KES-KNKTIAILLENRIEFLQLFAGAAMAGWTC 77 (487)
T ss_pred ChHHHHHHHHHhCCCCeEEecC--CcEeeHHHHHHHHHHHHHHHHH-hCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEE
Confidence 3455555554 3669999987 7899999999999999999998 674 89999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCCC
Q 037622 121 IPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIR 200 (560)
Q Consensus 121 v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (560)
+|+++.++.+++.++++.+++ ++++++......+.... ..++..+. +.................
T Consensus 78 v~l~~~~~~~~~~~~~~~~~~--~~vi~~~~~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 141 (487)
T PRK07638 78 VPLDIKWKQDELKERLAISNA--DMIVTERYKLNDLPDEE-GRVIEIDE-------------WKRMIEKYLPTYAPIENV 141 (487)
T ss_pred EecCccCCHHHHHHHHHhCCC--CEEEEecccccchhhcc-ceEEEehh-------------hhhhhhhccccccccccC
Confidence 999999999999999999999 99988876544433211 22222221 111111111111111223
Q ss_pred CCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEe
Q 037622 201 QQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVM 280 (560)
Q Consensus 201 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 280 (560)
.+++++|+|||||||.||+|+++|.++..++..... ...+.++|+++...|++|..++ ..++.++..|+++++.
T Consensus 142 ~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~-----~~~~~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~~~~ 215 (487)
T PRK07638 142 QNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVH-----DFHMKREDSVLIAGTLVHSLFL-YGAISTLYVGQTVHLM 215 (487)
T ss_pred CCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHH-----hcCcCCCCEEEEeecchHHHHH-HHHHHHHccCcEEEEc
Confidence 467899999999999999999999999888776654 4567889999999999998877 4788899999999999
Q ss_pred CCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhh
Q 037622 281 RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTE 360 (560)
Q Consensus 281 ~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE 360 (560)
+.+++..+++.++++++|++.++|+++..|.+. . . ...+.+.++++|+++++++.+++.+.+|++++++.||+||
T Consensus 216 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~---~-~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE 290 (487)
T PRK07638 216 RKFIPNQVLDKLETENISVMYTVPTMLESLYKE-N---R-VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASE 290 (487)
T ss_pred CCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC-c---C-cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCc
Confidence 999999999999999999999999999999875 1 1 2345566788899999999999999999999999999999
Q ss_pred cccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCc
Q 037622 361 STAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGD 440 (560)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD 440 (560)
++.++.... .......+++|+|+|++.++|+| +++.+++.|+.|||+++|+.++.||+++++.+...+ .+|||+|||
T Consensus 291 ~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD 367 (487)
T PRK07638 291 LSFVTALVD-EESERRPNSVGRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRD 367 (487)
T ss_pred cCceEEecc-cccCCCCCCCCcccCCcEEEEEC-CCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhc-cCCcEecCc
Confidence 997765543 22234567999999999999999 678999999999999999999999999998876654 689999999
Q ss_pred eEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHH
Q 037622 441 IAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL 520 (560)
Q Consensus 441 ~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 520 (560)
++++|++|++++.||.+|+||++|.+|+|.+||+++.++|+|.+++|++.+++..|+.+++++.. ....+++++++
T Consensus 368 l~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----~~~~~~l~~~~ 443 (487)
T PRK07638 368 VGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----SATKQQLKSFC 443 (487)
T ss_pred cEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----CCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888888764 35678999999
Q ss_pred HhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 521 AQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 521 ~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
++.++++++|..+++++++|+|++||++|++|++++.+.
T Consensus 444 ~~~l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~ 482 (487)
T PRK07638 444 LQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQ 482 (487)
T ss_pred HHHhhcccCCcEEEEecccCCCCcccccHHHHHHHHhcc
Confidence 999999999999999999999999999999999998764
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-68 Score=564.99 Aligned_cols=504 Identities=28% Similarity=0.417 Sum_probs=424.8
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.++++++.+.++ ++++|++....++.+||+||.++++++|.+|.+ .|+++|++|+|+++|+++++++++||+++|++
T Consensus 18 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~-~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~ 96 (558)
T PRK12583 18 QTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLA-LGVQPGDRVGIWAPNCAEWLLTQFATARIGAI 96 (558)
T ss_pred CcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCChHHHHHHHHHHhhCCE
Confidence 678888877664 558999886557899999999999999999998 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccch-----HHhhhcCC------------------CCEEEecCCCccccc
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENV-----DKLRSWGT------------------TPVVAVPENLVNDFK 176 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~-----~~~~~~~~------------------~~vi~~~~~~~~~~~ 176 (560)
++++++.++.+++.++++.+++ +++++++... ..+..... ..++......
T Consensus 97 ~v~l~~~~~~~~~~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 169 (558)
T PRK12583 97 LVNINPAYRASELEYALGQSGV--RWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP----- 169 (558)
T ss_pred EEecCCCCCHHHHHHHHHhcCC--cEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCC-----
Confidence 9999999999999999999999 8888775421 11111000 0111111110
Q ss_pred CCCcccHHHhhcccCC------CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcE
Q 037622 177 EGRFSDFHKLIAGKFD------LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAV 250 (560)
Q Consensus 177 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (560)
......+.+....... ........++++++++|||||||.||+|.++|.++..++..... ..++..+|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~-----~~~~~~~d~ 244 (558)
T PRK12583 170 PPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAE-----SLGLTEHDR 244 (558)
T ss_pred CccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHH-----HhCCCCCCe
Confidence 1122233333221110 01112335688999999999999999999999999887776655 456788999
Q ss_pred EEEecChhhHHhHHHHHHHHhhCCCEEEEeC-CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceee
Q 037622 251 FLAVLPMFHIYGLSLFALGLLSLGPSVVVMR-RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVS 329 (560)
Q Consensus 251 ~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~ 329 (560)
+++..|++|.+|....++.++..|+++++.. .+++..+++.++++++|++.++|+++..++.. ......+++++|.++
T Consensus 245 ~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~-~~~~~~~~~~lr~i~ 323 (558)
T PRK12583 245 LCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDH-PQRGNFDLSSLRTGI 323 (558)
T ss_pred EEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcc-ccccCCCchhheEEE
Confidence 9999999999999888899999999998754 57899999999999999999999999888765 333445678999999
Q ss_pred cccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCC-CCCCcccccccccCCeEEEEEeCCCCccCCCCCcceE
Q 037622 330 SGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNT-KKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGEL 408 (560)
Q Consensus 330 ~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~-~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel 408 (560)
+||+++++++.+++.+.++...+++.||+||++.+++..... .......++|.|+|++.++++|++ +.+++.|+.|||
T Consensus 324 ~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~~Gel 402 (558)
T PRK12583 324 MAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGEL 402 (558)
T ss_pred ecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCC-CCCCCCCCeeEE
Confidence 999999999999999999777899999999999876654322 123356789999999999999965 899999999999
Q ss_pred EEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEE
Q 037622 409 WLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVT 488 (560)
Q Consensus 409 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~ 488 (560)
+++|+.++.||+++++.+...++.++||+|||+|+++++|.+++.||.+|+|+.+|.+|++.+||+++.++|+|.+++|+
T Consensus 403 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~ 482 (558)
T PRK12583 403 CTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVF 482 (558)
T ss_pred EEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEE
Confidence 99999999999999999988887789999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhccC
Q 037622 489 GAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 489 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~ 560 (560)
+.++...++.++++++..++...+..+++++++++|+++++|..++++++||+|++||++|++|++++.+++
T Consensus 483 ~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~~~~~~ 554 (558)
T PRK12583 483 GVPDEKYGEEIVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIEEL 554 (558)
T ss_pred eeecCCCCcEEEEEEEECCCCCCCHHHHHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHHHHHHHHHhhc
Confidence 999888888899999988776677889999999999999999999999999999999999999999987763
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-69 Score=576.24 Aligned_cols=509 Identities=20% Similarity=0.286 Sum_probs=394.2
Q ss_pred CCCHHHHHhccCC--CCceEEEEC-----CCC--ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHH
Q 037622 41 LLDVDSFIFSHKH--NGRTALVDS-----LSG--YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111 (560)
Q Consensus 41 ~~~~~~~~~~~~~--~~~~a~~~~-----~~~--~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~l 111 (560)
..|+.+++.+.++ ++++|+... ..+ ..+||+||+++++++|++|.+ +|+++||+|+|+++|+++|++++|
T Consensus 44 ~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~Gv~~Gd~Vai~~~n~~e~~~~~l 122 (666)
T PLN02614 44 MDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRS-VGVKDEAKCGIYGANSPEWIISME 122 (666)
T ss_pred CCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4589998887664 669998741 112 358999999999999999999 899999999999999999999999
Q ss_pred HHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC------CCEEEecCCCccc---c--cCCCc
Q 037622 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT------TPVVAVPENLVND---F--KEGRF 180 (560)
Q Consensus 112 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------~~vi~~~~~~~~~---~--~~~~~ 180 (560)
||+++|+++||+++.++.+++.++++.+++ ++++++.+....+..... ..++.++...... . .....
T Consensus 123 A~~~~Gav~vpl~~~~~~~~l~~il~~~~~--~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~ 200 (666)
T PLN02614 123 ACNAHGLYCVPLYDTLGAGAVEFIISHSEV--SIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVI 200 (666)
T ss_pred HHHHcCCEEEEecCCCCHHHHHHHHhccCC--CEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEE
Confidence 999999999999999999999999999999 999998765544432211 2244443211000 0 00012
Q ss_pred ccHHHhhcccCC-CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhh
Q 037622 181 SDFHKLIAGKFD-LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFH 259 (560)
Q Consensus 181 ~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 259 (560)
..+++++..... ....+...++|+++|+|||||||.||||++||+++...+.............+.++|++++++|++|
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H 280 (666)
T PLN02614 201 YAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAH 280 (666)
T ss_pred EEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHH
Confidence 345555432211 1112234678999999999999999999999999998776554321000124678999999999999
Q ss_pred HHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhcc----------------------
Q 037622 260 IYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGL---------------------- 317 (560)
Q Consensus 260 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~---------------------- 317 (560)
.++.. .....+..|+++++.+ +++..+++.+++++||+++++|++++.+.......
T Consensus 281 ~~~~~-~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 358 (666)
T PLN02614 281 IFDRV-IEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGN 358 (666)
T ss_pred HHHHH-HHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 99985 4566788999998875 58999999999999999999999999886421000
Q ss_pred --------CCC-------------CC-CccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCC
Q 037622 318 --------CGN-------------SL-KSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFS 375 (560)
Q Consensus 318 --------~~~-------------~l-~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~ 375 (560)
... .+ +++|.+++||+++++.+ ..+.+.++++++++.||+||+++.++..... ...
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-~~~ 436 (666)
T PLN02614 359 MKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSLPD-ELD 436 (666)
T ss_pred HHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeeccc-cCC
Confidence 000 11 58999999999999875 5666666568999999999988655433222 123
Q ss_pred cccccccccCCeEEEEEeC-C-CCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEE
Q 037622 376 KYFSVGLLAPNIQAKVVDW-V-NGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIV 453 (560)
Q Consensus 376 ~~~~~G~~~p~~~~~v~d~-~-~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~ 453 (560)
..+++|+|+||++++|+|. + ++.+++.|+.|||+|+||+++.|||++|+.|.+.| .+|||+|||+|++|+||+|+|+
T Consensus 437 ~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~dG~l~i~ 515 (666)
T PLN02614 437 MLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVL-IDGWLHTGDVGEWQPNGSMKII 515 (666)
T ss_pred cCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhh-ccCCcccceEEEEcCCCCEEEE
Confidence 5689999999999999983 3 24788999999999999999999999999999999 5899999999999999999999
Q ss_pred ccccceeee-cceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCC----------CCC----------
Q 037622 454 DRLKEVIKY-NGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS----------TLT---------- 512 (560)
Q Consensus 454 GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------~~~---------- 512 (560)
||+||+||+ +|++|+|.+||++|.+||.|.+++|++..+.. .++|+|++.... ..+
T Consensus 516 gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~---~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (666)
T PLN02614 516 DRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFES---FLVAIANPNQQILERWAAENGVSGDYNALCQNEKA 592 (666)
T ss_pred EcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcc---eEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHH
Confidence 999999997 79999999999999999999999999987432 378888874320 001
Q ss_pred HHHHHHHH-----HhccCCCCCcceEEEec-CC-----CCCCCCcchHHHHHHHHhccC
Q 037622 513 EAAVIDYL-----AQRVAPYKKVRRVVFTK-SI-----PKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 513 ~~~l~~~~-----~~~l~~~~~p~~i~~~~-~l-----P~t~~GKi~r~~L~~~~~~~~ 560 (560)
.+.+.+.+ ++.|+.+.++++|+++. +| -+|+++|+.|+.+++.|+++|
T Consensus 593 ~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i 651 (666)
T PLN02614 593 KEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVI 651 (666)
T ss_pred HHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHH
Confidence 11222322 35699999999998886 44 399999999999999998764
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-68 Score=564.24 Aligned_cols=504 Identities=26% Similarity=0.389 Sum_probs=413.0
Q ss_pred CCCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhC
Q 037622 40 SLLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117 (560)
Q Consensus 40 ~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G 117 (560)
...++.+++.+.++ ++++|+++....+.+||+||.++++++|.+|.+ +|+++||+|+|+++|+++++++++||+++|
T Consensus 14 ~~~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G 92 (534)
T PRK05852 14 FGPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTR-SGLLPGDRVALRMGSNAEFVVALLAASRAD 92 (534)
T ss_pred hcccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCcHHHHHHHHHHHHcC
Confidence 34678888877664 569999876445789999999999999999999 899999999999999999999999999999
Q ss_pred CeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC--CC-EEEecCCCcccccCCCcc--cHHHhhcccCC
Q 037622 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT--TP-VVAVPENLVNDFKEGRFS--DFHKLIAGKFD 192 (560)
Q Consensus 118 ~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~--~~-vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 192 (560)
++++|+++.++.+++.++++.+++ +.++++............ .. .+.+.... . ...... ........ ..
T Consensus 93 ~~~v~l~~~~~~~~l~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~-~~ 166 (534)
T PRK05852 93 LVVVPLDPALPIAEQRVRSQAAGA--RVVLIDADGPHDRAEPTTRWWPLTVNVGGDS--G-PSGGTLSVHLDAATEP-TP 166 (534)
T ss_pred cEEeecCCCCCcHHHHHHHHhCCC--CEEEEcCCCcchhccccccccceeeeecccc--c-ccccccccccccccCC-Cc
Confidence 999999999999999999999999 888877643221111000 11 11111100 0 000000 00000000 00
Q ss_pred CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhh
Q 037622 193 LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLS 272 (560)
Q Consensus 193 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~ 272 (560)
.........++.++++|||||||.||+|+++|.++...+..... ...+..+|++++..|++|.+++...++.++.
T Consensus 167 ~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 241 (534)
T PRK05852 167 ATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIIT-----GYRLSPRDATVAVMPLYHGHGLIAALLATLA 241 (534)
T ss_pred cccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHH-----HhCCCCcceEEEecCcchhHHHHHHHHHHHh
Confidence 01111122467899999999999999999999999888877665 4567889999999999999999878899999
Q ss_pred CCCEEEEeC--CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhcc-CCCCCCccceeecccCCCCHHHHHHHHHhCCC
Q 037622 273 LGPSVVVMR--RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGL-CGNSLKSLKQVSSGAAPANSKIIEDFVGAFPH 349 (560)
Q Consensus 273 ~G~~~v~~~--~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~ 349 (560)
.|++++++. .+++..+++.++++++|+++++|+++..|.+..... ....++++|.+.++|+++++++++.+.+.+ +
T Consensus 242 ~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~-~ 320 (534)
T PRK05852 242 SGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEF-A 320 (534)
T ss_pred cCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHh-C
Confidence 999988865 478999999999999999999999999998752111 123467899999999999999999999998 8
Q ss_pred CeeecccchhhcccccccCCCCC------CCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCc
Q 037622 350 VDFIQGYGMTESTAVGTRGFNTK------KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNA 423 (560)
Q Consensus 350 ~~i~~~YG~tE~~~~~~~~~~~~------~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~ 423 (560)
.++++.||+||++..++...... .....+..|. .+|++++++| +++++++.|+.|||+++|++++.||++++
T Consensus 321 ~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~v~~gY~~~~ 398 (534)
T PRK05852 321 APVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVG-SDGLPLPAGAVGEVWLRGTTVVRGYLGDP 398 (534)
T ss_pred CChhhccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEEC-CCCCCCCCCCceEEEEecCcccchhcCCc
Confidence 99999999999987665432210 0112334444 7999999999 56899999999999999999999999999
Q ss_pred hhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEE
Q 037622 424 DATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFV 503 (560)
Q Consensus 424 ~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v 503 (560)
+.+...| .+|||+|||++++|+||++++.||.+|+|+.+|.+|++.+||+++.++|+|.+++|++.++...++.+++++
T Consensus 399 ~~t~~~~-~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v 477 (534)
T PRK05852 399 TITAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVI 477 (534)
T ss_pred ccchhhh-cCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEE
Confidence 9999888 578999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 504 VRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 504 ~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
++.++...+.+++.++++++|+++++|..++++++||+|++||++|++|++++...
T Consensus 478 v~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~~ 533 (534)
T PRK05852 478 VPRESAPPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGHS 533 (534)
T ss_pred EECCCCCCCHHHHHHHHHHhcccccCCeEEEEhhhcCCCCCccccHHHHHHHhccc
Confidence 98776667889999999999999999999999999999999999999999998753
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-68 Score=557.90 Aligned_cols=495 Identities=27% Similarity=0.399 Sum_probs=424.0
Q ss_pred CCHHHHHhccC-CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeE
Q 037622 42 LDVDSFIFSHK-HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIV 120 (560)
Q Consensus 42 ~~~~~~~~~~~-~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 120 (560)
-++.+++.+++ .++++|+.++ .++.+||.||.++++++|..|.+ +|+++||+|+++++|+++++++++||+++|+++
T Consensus 3 ~~l~~~~~~~~~~~~~~a~~~~-~~~~~Ty~eL~~~~~~la~~L~~-~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~ 80 (504)
T PRK07514 3 NNLFDALRAAFADRDAPFIETP-DGLRYTYGDLDAASARLANLLVA-LGVKPGDRVAVQVEKSPEALALYLATLRAGAVF 80 (504)
T ss_pred ccHHHHHHHHhhCCCCeEEEeC-CCCEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 36667776664 3558888764 36899999999999999999999 899999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC----CCEEEecCCCcccccCCCcccHHHhhcccCCCCCC
Q 037622 121 IPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT----TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVER 196 (560)
Q Consensus 121 v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (560)
+|+++.++.+++..+++.+++ +++++++.....+..... ..++.++... ...+.+...........
T Consensus 81 v~l~~~~~~~~~~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 150 (504)
T PRK07514 81 LPLNTAYTLAELDYFIGDAEP--ALVVCDPANFAWLSKIAAAAGAPHVETLDADG--------TGSLLEAAAAAPDDFET 150 (504)
T ss_pred EECCCCCCHHHHHHHHHhCCC--cEEEEccchhHHHHHhhhccCCceEEEecCCC--------cccHHHhhhhcCcccCc
Confidence 999999999999999999999 999988776655443321 1133333211 01111111111122223
Q ss_pred CCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCE
Q 037622 197 PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPS 276 (560)
Q Consensus 197 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~ 276 (560)
....++++++++|||||||.||+|.++|.++...+..... ...+.++|++++..|++|..++...++.++..|++
T Consensus 151 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~ 225 (504)
T PRK07514 151 VPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVD-----YWRFTPDDVLIHALPIFHTHGLFVATNVALLAGAS 225 (504)
T ss_pred ccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHH-----HhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcE
Confidence 3456789999999999999999999999999988776655 45678899999999999999997788899999999
Q ss_pred EEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeeccc
Q 037622 277 VVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGY 356 (560)
Q Consensus 277 ~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~Y 356 (560)
+++.+..++..+++.+ .++|++.++|+++..+++. .......++++|.+++||+++++++.+.+.+.+ +.++++.|
T Consensus 226 ~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~Y 301 (504)
T PRK07514 226 MIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQE-PRLTREAAAHMRLFISGSAPLLAETHREFQERT-GHAILERY 301 (504)
T ss_pred EEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcC-CCCCcccccceeeEEecCCCCCHHHHHHHHHHh-CCcceeec
Confidence 9999989999999999 4799999999999999875 334445678999999999999999999999988 78999999
Q ss_pred chhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCce
Q 037622 357 GMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWL 436 (560)
Q Consensus 357 G~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~ 436 (560)
|+||++....... ......+++|.|+|+++++++|++++++++.|+.|||+++|++++.||+++++.+...|..++||
T Consensus 302 G~tE~~~~~~~~~--~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~ 379 (504)
T PRK07514 302 GMTETNMNTSNPY--DGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFF 379 (504)
T ss_pred ccccccccccCCc--cccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCe
Confidence 9999986654322 12234678999999999999998889999999999999999999999999999999999878999
Q ss_pred ecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHH
Q 037622 437 HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAV 516 (560)
Q Consensus 437 ~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 516 (560)
+|||+++++++|.+++.||.||+||.+|++|++.+||+++.++++|.+++|++.++...++.++++++...+...+.+++
T Consensus 380 ~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 459 (504)
T PRK07514 380 ITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAI 459 (504)
T ss_pred eecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888999999887767788999
Q ss_pred HHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 517 IDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 517 ~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+++++++|+++++|..+++++++|+|++||++|++|++++++.
T Consensus 460 ~~~~~~~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~~ 502 (504)
T PRK07514 460 LAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADL 502 (504)
T ss_pred HHHHHhhcccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998764
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-68 Score=564.51 Aligned_cols=504 Identities=28% Similarity=0.444 Sum_probs=426.2
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.++.++|.+.++ ++++|+++...++.+||+||.++++++|..|.+ .|+++||+|+++++|++++++++|||+++|++
T Consensus 16 ~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~-~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~ 94 (559)
T PRK08315 16 QTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLA-LGIEKGDRVGIWAPNVPEWVLTQFATAKIGAI 94 (559)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHhCeE
Confidence 688888887665 568999886557899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchH-----HhhhcCC------------------CCEEEecCCCccccc
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVD-----KLRSWGT------------------TPVVAVPENLVNDFK 176 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~-----~~~~~~~------------------~~vi~~~~~~~~~~~ 176 (560)
++|++|..+.+++..+++.+++ ++++++..... .+.+... ..++..+...
T Consensus 95 ~v~l~~~~~~~~~~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 167 (559)
T PRK08315 95 LVTINPAYRLSELEYALNQSGC--KALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK----- 167 (559)
T ss_pred EEecCccCCHHHHHHHHHhcCC--CEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccC-----
Confidence 9999999999999999999999 88888764321 1111000 1122222110
Q ss_pred CCCcccHHHhhcccC----C--CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcE
Q 037622 177 EGRFSDFHKLIAGKF----D--LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAV 250 (560)
Q Consensus 177 ~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (560)
..+...+.++..... . ........++++++++|||||||.||+|.++|.++..++..... ...+.++|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~-----~~~~~~~d~ 242 (559)
T PRK08315 168 HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGE-----AMKLTEEDR 242 (559)
T ss_pred CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHH-----hcCCCCCce
Confidence 112233333322110 0 11122345788999999999999999999999999888777665 467889999
Q ss_pred EEEecChhhHHhHHHHHHHHhhCCCEEEE-eCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceee
Q 037622 251 FLAVLPMFHIYGLSLFALGLLSLGPSVVV-MRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVS 329 (560)
Q Consensus 251 ~~~~~p~~~~~g~~~~~~~~l~~G~~~v~-~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~ 329 (560)
++...|++|..++...++.++..|+++++ ...+++..+++.++++++|++.++|+++..+... .......++++|.++
T Consensus 243 ~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~-~~~~~~~~~~lr~~~ 321 (559)
T PRK08315 243 LCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDH-PDFARFDLSSLRTGI 321 (559)
T ss_pred EEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhC-cccCCCCchhhheeE
Confidence 99999999999998888999999999985 4468999999999999999999999999888765 333445678999999
Q ss_pred cccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCC-CCCcccccccccCCeEEEEEeCCCCccCCCCCcceE
Q 037622 330 SGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTK-KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGEL 408 (560)
Q Consensus 330 ~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~-~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel 408 (560)
+||+++++++.+.+.+.++..++++.||+||++.+++...... ...+..++|+|+|++.++++|++++++++.|+.|||
T Consensus 322 ~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl 401 (559)
T PRK08315 322 MAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGEL 401 (559)
T ss_pred ecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEE
Confidence 9999999999999999996667999999999987765443222 123567999999999999999777999999999999
Q ss_pred EEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEE
Q 037622 409 WLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVT 488 (560)
Q Consensus 409 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~ 488 (560)
+|+|++++.||+++++.+...++.++||+|||+++++++|.++++||.+|+++.+|++|++.+||+++.++|+|.+++|+
T Consensus 402 ~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~ 481 (559)
T PRK08315 402 CTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVV 481 (559)
T ss_pred EEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEE
Confidence 99999999999999999998887789999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 489 GAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 489 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+.+++..++.++++|++..+...+.++++++++++++.+++|..++++++||+|++||++|++|++++...
T Consensus 482 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r~~L~~~~~~~ 552 (559)
T PRK08315 482 GVPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEE 552 (559)
T ss_pred ecCCCCCCeEEEEEEEeCCCCCCCHHHHHHHHHhhcccccCCcEEEEcccCCCCCCCceeHHHHHHHHHhh
Confidence 99988878888999988777667888999999999999999999999999999999999999999987653
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=558.69 Aligned_cols=500 Identities=31% Similarity=0.447 Sum_probs=423.4
Q ss_pred CCCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhC
Q 037622 40 SLLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117 (560)
Q Consensus 40 ~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G 117 (560)
...|+.+.+...++ ++++|+++. ++.+||.||.++++++|.+|.+ .|+++|++|+|+++|+++++++++||+++|
T Consensus 15 ~~~n~~~~~~~~a~~~~~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G 91 (542)
T PRK07786 15 RRQNWVNQLARHALMQPDAPALRFL--GNTTTWRELDDRVAALAGALSR-RGVGFGDRVLILMLNRTEFVESVLAANMLG 91 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 34788888876654 568999987 7899999999999999999998 799999999999999999999999999999
Q ss_pred CeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC-----CCEEEecCCCcccccCCCcccHHHhhcccCC
Q 037622 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-----TPVVAVPENLVNDFKEGRFSDFHKLIAGKFD 192 (560)
Q Consensus 118 ~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (560)
++++|+++.++.+++..+++.+++ +.++++......+..... ..++..++.. ......+.+++.....
T Consensus 92 ~~~vpl~~~~~~~~~~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 164 (542)
T PRK07786 92 AIAVPVNFRLTPPEIAFLVSDCGA--HVVVTEAALAPVATAVRDIVPLLSTVVVAGGSS-----DDSVLGYEDLLAEAGP 164 (542)
T ss_pred eEEEEcCccCCHHHHHHHHHhCCC--cEEEEccchHHHHHHhhhccCccceEEEecCCC-----cccccCHHHHhhccCC
Confidence 999999999999999999999999 999988766544332211 2233333211 1223445555443322
Q ss_pred CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccC-CCCcEEEEecChhhHHhHHHHHHHHh
Q 037622 193 LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYL-SSEAVFLAVLPMFHIYGLSLFALGLL 271 (560)
Q Consensus 193 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~g~~~~~~~~l 271 (560)
.........+++++++|||||||.||+|.++|.++...+..... ...+ ..++++++..|++|.+|+ ..++.++
T Consensus 165 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l 238 (542)
T PRK07786 165 AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLR-----TNGADINSDVGFVGVPLFHIAGI-GSMLPGL 238 (542)
T ss_pred CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHH-----hcCCCCCCceEEEecchHHHHHH-HHHHHHH
Confidence 22233455678999999999999999999999999887776554 2333 568899999999999998 5788899
Q ss_pred hCCCEEEEeC--CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCC
Q 037622 272 SLGPSVVVMR--RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPH 349 (560)
Q Consensus 272 ~~G~~~v~~~--~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~ 349 (560)
..|+++++.+ .+++..+++.++++++|.++++|+++..++.. ....... .++|.+++||+++++++++.+.+.|++
T Consensus 239 ~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~-~~~~~~~-~~lr~i~~gg~~~~~~~~~~~~~~~~~ 316 (542)
T PRK07786 239 LLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAE-QQARPRD-LALRVLSWGAAPASDTLLRQMAATFPE 316 (542)
T ss_pred HccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhC-cccCccC-cceEEEEECCCCCCHHHHHHHHHHcCC
Confidence 9999999865 57899999999999999999999999999875 2222222 368999999999999999999999999
Q ss_pred CeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhc
Q 037622 350 VDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMST 429 (560)
Q Consensus 350 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~ 429 (560)
.++++.||+||++.+.+...........+++|.|+|++.++++| +++++++.|+.|||+++|+.++.||+++++.+...
T Consensus 317 ~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~ 395 (542)
T PRK07786 317 AQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEA 395 (542)
T ss_pred CeEEeeecccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHH
Confidence 99999999999997766543333334567899999999999999 67889999999999999999999999999999988
Q ss_pred cCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCC
Q 037622 430 IDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS 509 (560)
Q Consensus 430 ~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 509 (560)
| .++||+|||+++++++|.+++.||.+|+|+.+|.+|++.+||++|.++|.|.+++|++.+++..++.+++++++..+.
T Consensus 396 f-~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 474 (542)
T PRK07786 396 F-AGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDD 474 (542)
T ss_pred h-hCCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCC
Confidence 8 579999999999999999999999999999999999999999999999999999999998887788888888876543
Q ss_pred -CCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 510 -TLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 510 -~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
....+++.+++++++++++.|..++++++||+|++||++|++|++++.+.
T Consensus 475 ~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~ 525 (542)
T PRK07786 475 AALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGAC 525 (542)
T ss_pred CCCCHHHHHHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhh
Confidence 35678999999999999999999999999999999999999999998764
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-68 Score=559.63 Aligned_cols=486 Identities=24% Similarity=0.320 Sum_probs=404.9
Q ss_pred CCHHHHHhccCCCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEcCCCChHHHHHHHHHHhCCeE
Q 037622 42 LDVDSFIFSHKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGI-SQGDAVLLLLPNSIYFPVIFLALLYLGAIV 120 (560)
Q Consensus 42 ~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 120 (560)
.|+.+++.+++.++++|+++. +.++||.||.++++++|..|.+ +|+ ++||+|+++++|+++++++++||+++|+++
T Consensus 3 ~~~~~~l~~~~~p~~~Al~~~--~~~lTy~el~~~~~~la~~L~~-~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~ 79 (540)
T PRK13388 3 DTIAQLLRDRAGDDTIAVRYG--DRTWTWREVLAEAAARAAALIA-LADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVL 79 (540)
T ss_pred hhHHHHHHhhccCCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEE
Confidence 478888888888889999987 7899999999999999999999 799 899999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC--CCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCC
Q 037622 121 IPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG--TTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPV 198 (560)
Q Consensus 121 v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~--~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (560)
+|++|.++.+++.++++.+++ +++++++.....+.... ...++.++.. .+.+++...........
T Consensus 80 v~l~p~~~~~~l~~~l~~~~~--~~~i~~~~~~~~~~~~~~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~ 146 (540)
T PRK13388 80 VGLNTTRRGAALAADIRRADC--QLLVTDAEHRPLLDGLDLPGVRVLDVDTP-----------AYAELVAAAGALTPHRE 146 (540)
T ss_pred EEecccCChHHHHHHHHhcCC--CEEEEChhhhHHHHhhcccCceEEEccch-----------hhhhhhccccCcCCCCC
Confidence 999999999999999999999 99999877665554331 1233332211 12222221111111123
Q ss_pred CCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEE
Q 037622 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278 (560)
Q Consensus 199 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 278 (560)
..++++++++|||||||.||+|.++|.++......... ..++..+|+++..+|++|..++...++.++..|++++
T Consensus 147 ~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v 221 (540)
T PRK13388 147 VDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTE-----RFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVA 221 (540)
T ss_pred CCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHH-----HhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEE
Confidence 46789999999999999999999999999877766655 4668889999999999999998766667899999999
Q ss_pred EeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccch
Q 037622 279 VMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGM 358 (560)
Q Consensus 279 ~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~ 358 (560)
+.+.+++..+++.++++++|++..+|..+..++.. .........+++. .+ |+++++.....+.+.+ ++++++.||+
T Consensus 222 ~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~-~~~~~~~~~~l~~-~~-G~~~~~~~~~~~~~~~-~~~l~~~YG~ 297 (540)
T PRK13388 222 LPAKFSASGFLDDVRRYGATYFNYVGKPLAYILAT-PERPDDADNPLRV-AF-GNEASPRDIAEFSRRF-GCQVEDGYGS 297 (540)
T ss_pred ECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhC-CCCccccccceEE-EE-CCCCCHHHHHHHHHHh-CCceeccccc
Confidence 98888999999999999999999999999988765 2222222345663 33 5567888888998888 8999999999
Q ss_pred hhcccccccCCCCCCCCcccccccccCCeEEE-----------EEeCCCCccC-CCCCcceEEEe-cccchhhhcCCchh
Q 037622 359 TESTAVGTRGFNTKKFSKYFSVGLLAPNIQAK-----------VVDWVNGCFL-PPGSTGELWLR-GPGTMKEYINNADA 425 (560)
Q Consensus 359 tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~-----------v~d~~~~~~~-~~g~~Gel~v~-~~~~~~gy~~~~~~ 425 (560)
||++.+++... ....+++|+|+||+++. ++| ++++.+ +.++.|||+++ |++++.||+++|+.
T Consensus 298 tE~~~~~~~~~----~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~ 372 (540)
T PRK13388 298 SEGAVIVVREP----GTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFFEGYYNNPEA 372 (540)
T ss_pred ccccceeecCC----CCCCCCCCCCCCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCcccccccCChHH
Confidence 99987765432 23467899999997652 333 334444 34678999998 99999999999999
Q ss_pred hhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEe
Q 037622 426 TMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVR 505 (560)
Q Consensus 426 ~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 505 (560)
+.+.+ .+|||+|||+|++++||.+++.||.+|+||.+|++|+|.+||+++.++|+|.+|+|++.+++..|+.+++++++
T Consensus 373 t~~~~-~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~ 451 (540)
T PRK13388 373 TAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVL 451 (540)
T ss_pred HHHHh-hcCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEE
Confidence 98888 57899999999999999999999999999999999999999999999999999999999998888888888888
Q ss_pred cCCCCCCHHHHHHHHHhc--cCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 506 RDGSTLTEAAVIDYLAQR--VAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 506 ~~~~~~~~~~l~~~~~~~--l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
.++...+.++++++++.+ |++++.|..++++++||+|++||++|++|++....
T Consensus 452 ~~~~~~~~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~ 506 (540)
T PRK13388 452 RDGATFDPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWA 506 (540)
T ss_pred CCCCcCCHHHHHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccC
Confidence 877777888999999764 99999999999999999999999999999987643
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=555.11 Aligned_cols=487 Identities=24% Similarity=0.326 Sum_probs=413.4
Q ss_pred CCCHHHHHhccCCCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeE
Q 037622 41 LLDVDSFIFSHKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIV 120 (560)
Q Consensus 41 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 120 (560)
..++.+.+.+.+.++++|++.. ++++||.||.++++++|.+|.+..|++++++|+++++|+++++++++||+++|+++
T Consensus 4 ~~~~~~~l~~~a~~~~~a~~~~--~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~ 81 (529)
T PRK07867 4 APTVAELLLPLAEDDDRGLYFE--DSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVP 81 (529)
T ss_pred cccHHHHHHHhcccCCceEEEC--CcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 3688899988888889999986 78999999999999999999983389999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC-CCEEEecCCCcccccCCCcccHHHhhccc-CCCCCCCC
Q 037622 121 IPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-TPVVAVPENLVNDFKEGRFSDFHKLIAGK-FDLVERPV 198 (560)
Q Consensus 121 v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 198 (560)
+|+++.++.+++.++++.+++ +++++++.....+..... ..++..+.. .+.+.+... ........
T Consensus 82 v~l~~~~~~~~l~~~l~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~ 148 (529)
T PRK07867 82 VGLNPTRRGAALARDIAHADC--QLVLTESAHAELLDGLDPGVRVINVDSP-----------AWADELAAHRDAEPPFRV 148 (529)
T ss_pred EEecCCCChHHHHHHHHhCCC--eEEEECHhHHHHHHhhccCceEEEeccc-----------cHHHHhcccCCCCCCccc
Confidence 999999999999999999999 999999877665443321 222222211 123222221 11122234
Q ss_pred CCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEE
Q 037622 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278 (560)
Q Consensus 199 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 278 (560)
..++++++++|||||||.||+|+++|.++......... .+++...|+++...|++|..++...++.++..|++++
T Consensus 149 ~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~-----~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~ 223 (529)
T PRK07867 149 ADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQ-----RFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIA 223 (529)
T ss_pred CCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHH-----hhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEE
Confidence 56789999999999999999999999999887776655 4567889999999999999999777788999999999
Q ss_pred EeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccch
Q 037622 279 VMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGM 358 (560)
Q Consensus 279 ~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~ 358 (560)
+.+.+++..+++.++++++|++.++|+.+..++.. .........++|. ++||+.+++.+ ..+.+.+ ++++++.||+
T Consensus 224 ~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~-~~~~~~~~~~lr~-~~gg~~~~~~~-~~~~~~~-g~~l~~~YG~ 299 (529)
T PRK07867 224 LRRKFSASGFLPDVRRYGATYANYVGKPLSYVLAT-PERPDDADNPLRI-VYGNEGAPGDI-ARFARRF-GCVVVDGFGS 299 (529)
T ss_pred ecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhC-CCcccccccceEE-EecCCCChHHH-HHHHHHh-CCcEEEeecc
Confidence 99889999999999999999999999999988765 2222223356774 56888888765 6677777 8999999999
Q ss_pred hhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCC------------cceEEE-ecccchhhhcCCchh
Q 037622 359 TESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGS------------TGELWL-RGPGTMKEYINNADA 425 (560)
Q Consensus 359 tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~------------~Gel~v-~~~~~~~gy~~~~~~ 425 (560)
||++..+.... ....+++|.|+++ ++++|++++.+++.|+ .|||++ +|++++.||+++++.
T Consensus 300 TE~~~~~~~~~----~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~ 373 (529)
T PRK07867 300 TEGGVAITRTP----DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEA 373 (529)
T ss_pred cccccccccCC----CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHh
Confidence 99986654322 1245689999999 6788877888899888 999999 999999999999999
Q ss_pred hhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEe
Q 037622 426 TMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVR 505 (560)
Q Consensus 426 ~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 505 (560)
+...+ .+|||+|||+++++++|.+++.||.||+|+++|++|+|.+||++|.++|+|.+++|++.+++..|+.++++++.
T Consensus 374 ~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~ 452 (529)
T PRK07867 374 DAERM-RGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVL 452 (529)
T ss_pred hhhhh-cCCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEE
Confidence 98888 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHhc--cCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 506 RDGSTLTEAAVIDYLAQR--VAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 506 ~~~~~~~~~~l~~~~~~~--l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
.++...+.++++++++++ |+++++|..++++++||+|++||++|++|++....
T Consensus 453 ~~~~~~~~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~ 507 (529)
T PRK07867 453 APGAKFDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVD 507 (529)
T ss_pred CCCCCCCHHHHHHHHHhhccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCC
Confidence 887778889999999875 99999999999999999999999999999998643
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=557.17 Aligned_cols=493 Identities=27% Similarity=0.351 Sum_probs=417.9
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.++.+++.++++ ++++|+++. ++.+||+||.+++.++|..|.+ +|+++|++|+++++|+++++++++||+++|++
T Consensus 21 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~v~~la~~L~~-~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~ 97 (542)
T PRK06155 21 RTLPAMLARQAERYPDRPLLVFG--GTRWTYAEAARAAAAAAHALAA-AGVKRGDRVALMCGNRIEFLDVFLGCAWLGAI 97 (542)
T ss_pred cCHHHHHHHHHHHCCCCeEEEeC--CccccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHhCCE
Confidence 688888888775 569999987 7899999999999999999999 89999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC-----CCEEEecCCCcccccCCCcccHHHhhcccCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-----TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLV 194 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (560)
++|+++.++.+++..+++.+++ ++++++.+....+..... ..++.++..... ............. .....
T Consensus 98 ~vpl~~~~~~~~l~~~l~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~ 172 (542)
T PRK06155 98 AVPINTALRGPQLEHILRNSGA--RLLVVEAALLAALEAADPGDLPLPAVWLLDAPASV--SVPAGWSTAPLPP-LDAPA 172 (542)
T ss_pred EEEeccccCHHHHHHHHHhcCc--eEEEEChhhHHHHHHhcccccCcceEEEecCcccc--ccccccchhhhcc-cCCCC
Confidence 9999999999999999999999 999998876665544321 223333322100 0000000001111 11111
Q ss_pred CCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCC
Q 037622 195 ERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLG 274 (560)
Q Consensus 195 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G 274 (560)
......++++++++|||||||.||+|+++|.++......... ...+.+.+++++..|++|..++. .++.++..|
T Consensus 173 ~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~-----~~~~~~~~~~l~~~pl~~~~~~~-~~~~~l~~G 246 (542)
T PRK06155 173 PAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAE-----DLEIGADDVLYTTLPLFHTNALN-AFFQALLAG 246 (542)
T ss_pred CCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHH-----hcCCCCCCEEEEecCHHHHHHHH-HHHHHHHcC
Confidence 123346789999999999999999999999999877665554 46688899999999999999985 678999999
Q ss_pred CEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeec
Q 037622 275 PSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354 (560)
Q Consensus 275 ~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~ 354 (560)
+++++.+.+++..+++.++++++|++.++|+++..|.+. .........++|.++.|| +++.+.+.+.+.+ ++++++
T Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~-~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~ 322 (542)
T PRK06155 247 ATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQ-PARESDRAHRVRVALGPG--VPAALHAAFRERF-GVDLLD 322 (542)
T ss_pred ceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcC-cCccccccCceEEEEEcC--CCHHHHHHHHHHc-CCCEEe
Confidence 999999999999999999999999999999999998865 333344567888777655 6789999999988 899999
Q ss_pred ccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecc---cchhhhcCCchhhhhccC
Q 037622 355 GYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP---GTMKEYINNADATMSTID 431 (560)
Q Consensus 355 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~---~~~~gy~~~~~~~~~~~~ 431 (560)
.||+||++.++..... ...++++|.+++++.++|+| +++++++.|+.|||+++|+ .++.||+++++.+...|
T Consensus 323 ~YG~tE~~~~~~~~~~---~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~- 397 (542)
T PRK06155 323 GYGSTETNFVIAVTHG---SQRPGSMGRLAPGFEARVVD-EHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW- 397 (542)
T ss_pred eecccccCccccCCCC---CCCCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh-
Confidence 9999999887654321 34577899999999999999 5689999999999999998 69999999999998887
Q ss_pred CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCC
Q 037622 432 KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTL 511 (560)
Q Consensus 432 ~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 511 (560)
.++||+|||+|++++||.+++.||.+|+|+.+|.+|+|.+||+++.++|+|.+++|++++++..++.+.+++++..+...
T Consensus 398 ~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~ 477 (542)
T PRK06155 398 RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTAL 477 (542)
T ss_pred cCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999998888888899988877778
Q ss_pred CHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHh
Q 037622 512 TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLT 557 (560)
Q Consensus 512 ~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~ 557 (560)
+..+++++++++++.+++|..+++++++|+|++||++|++|++++-
T Consensus 478 ~~~~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~ 523 (542)
T PRK06155 478 EPVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGV 523 (542)
T ss_pred CHHHHHHHHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhcc
Confidence 8899999999999999999999999999999999999999998764
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-67 Score=557.98 Aligned_cols=492 Identities=28% Similarity=0.401 Sum_probs=412.8
Q ss_pred CCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 41 LLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 41 ~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
..++.+++.++++ ++++|++++ ++++||+||.++++++|.+|.+ +|+++|++|+++++|+++++++++||+++|+
T Consensus 22 ~~~l~~~~~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~ 98 (527)
T TIGR02275 22 DKPLTDILRDQAARYPDAIAIICG--NRQWSYRELDQRADNLAAGLTK-LGIGQGDTAVVQLPNIAEFYIVFFALLKLGI 98 (527)
T ss_pred CCcHHHHHHHHHHHCCCceEEEeC--CceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHHcCe
Confidence 3678888877664 559999987 7899999999999999999999 8999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccch--------HHhhhcC-CCCEEEecCCCcccccCCCcccHHHhhcc
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENV--------DKLRSWG-TTPVVAVPENLVNDFKEGRFSDFHKLIAG 189 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~--------~~~~~~~-~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 189 (560)
+++++++..+.+++.++++.+++ ++++++.... ..+.... ....+.+.... .........+..
T Consensus 99 ~~v~~~~~~~~~~~~~~l~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 170 (527)
T TIGR02275 99 APVLALFSHRKSELTAYAQQIEP--ALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQT------RVEAELFLWLES 170 (527)
T ss_pred EEeccccccCHHHHHHHHHhcCC--cEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCC------CCcchhhHHhhC
Confidence 99999999999999999999999 8888775431 1111111 11111111110 000011111111
Q ss_pred cCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHH-HHH
Q 037622 190 KFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSL-FAL 268 (560)
Q Consensus 190 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~ 268 (560)
...........++++++++|||||||.||+|+++|.++..++..... ...++.+|+++..+|++|.+++.. .++
T Consensus 171 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~-----~~~~~~~d~~l~~~P~~h~~~~~~~~~~ 245 (527)
T TIGR02275 171 PAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVE-----ICWLTQQTRYLCALPAAHNYPLSSPGAL 245 (527)
T ss_pred cCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHh-----hcCCCcCCEEEECCChHhhhhhhHHHHH
Confidence 11112223456789999999999999999999999999988776655 456788999999999999999854 477
Q ss_pred HHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCC
Q 037622 269 GLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP 348 (560)
Q Consensus 269 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~ 348 (560)
.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+. .......++++|.+++||+++++++.+++.+.+
T Consensus 246 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~-~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~- 323 (527)
T TIGR02275 246 GVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQA-ASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVF- 323 (527)
T ss_pred HHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhC-ccccCCCccceEEEEEcCCCCCHHHHHHHHHHh-
Confidence 889999999998888999999999999999999999999998876 334456678999999999999999999999988
Q ss_pred CCeeecccchhhcccccccCCCCCCCCccccccccc-CCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhh
Q 037622 349 HVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLA-PNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATM 427 (560)
Q Consensus 349 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~-p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~ 427 (560)
++++++.||+||++..... .........+++|+|+ ++..++++| +++++++.|+.|||+++|++++.||+++++.+.
T Consensus 324 g~~~~~~YG~tE~~~~~~~-~~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~ 401 (527)
T TIGR02275 324 GCQLQQVFGMAEGLVNYTR-LDDPAEIIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNA 401 (527)
T ss_pred CCeEEeeeccCccCccccC-CCCccccccccCCCCCCCCceEEEEC-CCCCCCCCCCceEEEecCCccchhhcCChhHhH
Confidence 8999999999996544322 2222233457899999 588999999 678899999999999999999999999999999
Q ss_pred hccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecC
Q 037622 428 STIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD 507 (560)
Q Consensus 428 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 507 (560)
..++.+|||+|||+|+++++|++++.||.+|+|+.+|++|+|.+||++|.++|+|.+++|++.++...++.+++++++.+
T Consensus 402 ~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~ 481 (527)
T TIGR02275 402 AAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRD 481 (527)
T ss_pred hhcCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECC
Confidence 99988999999999999999999999999999999999999999999999999999999999999988899999998876
Q ss_pred CCCCCHHHHHHHHHhc-cCCCCCcceEEEecCCCCCCCCcchHHHHH
Q 037622 508 GSTLTEAAVIDYLAQR-VAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553 (560)
Q Consensus 508 ~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~ 553 (560)
+ ..+..+++++++++ +++++.|..++++++||+|++||++|++||
T Consensus 482 ~-~~~~~~l~~~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 482 P-ALKAAQLRRFLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred C-CCCHHHHHHHHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence 5 46788999999986 999999999999999999999999999875
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-68 Score=569.17 Aligned_cols=506 Identities=21% Similarity=0.240 Sum_probs=395.4
Q ss_pred CCCHHHHHhccCC--CCceEEEECCCC---ceecHHHHHHHHHHHHHHHHHh--hCCCCC-----------CEEEEEcCC
Q 037622 41 LLDVDSFIFSHKH--NGRTALVDSLSG---YSISYPQLFPLVQSVASGLRHH--FGISQG-----------DAVLLLLPN 102 (560)
Q Consensus 41 ~~~~~~~~~~~~~--~~~~a~~~~~~~---~~~Ty~el~~~v~~la~~L~~~--~g~~~g-----------d~V~i~~~~ 102 (560)
..|+.+++.+.++ ++++|+++...+ +.+||+||.++++++|++|.+. +|+++| |+|+|+++|
T Consensus 60 ~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N 139 (746)
T PTZ00342 60 YKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSN 139 (746)
T ss_pred cchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCC
Confidence 4689999988875 569999864223 6899999999999999999871 399999 999999999
Q ss_pred CChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC-----CCEEEecCCCccc---
Q 037622 103 SIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-----TPVVAVPENLVND--- 174 (560)
Q Consensus 103 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~~~~~~~~~--- 174 (560)
+++|+++++||+++|+++||++++++.+++.++++++++ ++++++.+..+.+..... ..++.++......
T Consensus 140 ~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~--~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~ 217 (746)
T PTZ00342 140 SINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKL--EWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEIN 217 (746)
T ss_pred CHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCC--CEEEEcHHHHHHHHHhhccCCCceEEEEECCCCcccccc
Confidence 999999999999999999999999999999999999999 888888777666543221 2455554311000
Q ss_pred -----------c--cCC----------------------------------------------CcccHHHhhcccCCCCC
Q 037622 175 -----------F--KEG----------------------------------------------RFSDFHKLIAGKFDLVE 195 (560)
Q Consensus 175 -----------~--~~~----------------------------------------------~~~~~~~~~~~~~~~~~ 195 (560)
. ... ....++++.........
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (746)
T PTZ00342 218 INKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYK 297 (746)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcccCCC
Confidence 0 000 00011222111111112
Q ss_pred CCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCC
Q 037622 196 RPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGP 275 (560)
Q Consensus 196 ~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~ 275 (560)
.....++|+++|+|||||||.||||++||+|+.+.+....... .......+++++++|++|++++. ..+.++..|+
T Consensus 298 ~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~---~~~~~~~d~~ls~LPL~Hi~~~~-~~~~~l~~G~ 373 (746)
T PTZ00342 298 IQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS---IFKKYNPKTHLSYLPISHIYERV-IAYLSFMLGG 373 (746)
T ss_pred CCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc---cccCCCCCeEEEeCcHHHHHHHH-HHHHHHHcCC
Confidence 2345679999999999999999999999999998876654311 11123568999999999999996 5677899999
Q ss_pred EEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhh-------hccC------------------------------
Q 037622 276 SVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAA-------KGLC------------------------------ 318 (560)
Q Consensus 276 ~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~-------~~~~------------------------------ 318 (560)
++++.+. ++..+++.+++++||+++++|.++..+.... +...
T Consensus 374 ~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~ 452 (746)
T PTZ00342 374 TINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHIS 452 (746)
T ss_pred EEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHH
Confidence 9998865 8999999999999999999999999986521 0000
Q ss_pred ----CCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCccccccccc-CCeEEEEEe
Q 037622 319 ----GNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLA-PNIQAKVVD 393 (560)
Q Consensus 319 ----~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~-p~~~~~v~d 393 (560)
.....++|.+++||+++++++.+.+...+ ++++.+.||+||+++.++.... .....+++|.|+ |+++++++|
T Consensus 453 ~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~~~~~~~--~~~~~gsvG~p~~pg~e~ki~d 529 (746)
T PTZ00342 453 SKIKDKVNPNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGPIFVQHA--DDNNTESIGGPISPNTKYKVRT 529 (746)
T ss_pred HHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccceeeeccC--CCCCcccccCcCCCcEEEEEec
Confidence 00125899999999999999999999888 8999999999999876654432 234678999998 999999998
Q ss_pred CCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeee-cceecChHHH
Q 037622 394 WVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKY-NGYQISPADL 472 (560)
Q Consensus 394 ~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~~I 472 (560)
.++....+.+..|||+++||+++.|||++|+.|++.|+.+|||+|||+|++|+||+++++||++|+||+ +|++|+|.+|
T Consensus 530 ~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eI 609 (746)
T PTZ00342 530 WETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDML 609 (746)
T ss_pred ccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHH
Confidence 655555555567999999999999999999999999988999999999999999999999999999997 7999999999
Q ss_pred HHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCC----------------CC-CCH-----------HHHHHH-----
Q 037622 473 ETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDG----------------ST-LTE-----------AAVIDY----- 519 (560)
Q Consensus 473 E~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~----------------~~-~~~-----------~~l~~~----- 519 (560)
|+++.++|.|.+++|++.... ..++|+|++... -. .+. .++++.
T Consensus 610 E~~l~~~p~V~~~~VvG~~~~---~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~ 686 (746)
T PTZ00342 610 NNLYSQISFINFCVVYGDDSM---DGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKM 686 (746)
T ss_pred HHHHhcCCCccEEEEEccCCc---cccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHHHHH
Confidence 999999999999999996433 247888886420 00 000 111222
Q ss_pred --H--HhccCCCCCcceEEEec-CCC----CCCCCcchHHHHHHHHhcc
Q 037622 520 --L--AQRVAPYKKVRRVVFTK-SIP----KSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 520 --~--~~~l~~~~~p~~i~~~~-~lP----~t~~GKi~r~~L~~~~~~~ 559 (560)
+ +..|+.+.++++|.++. ++. +||+.|+.|+.+.+.|+..
T Consensus 687 ~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~~ 735 (746)
T PTZ00342 687 LEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAFF 735 (746)
T ss_pred HHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHHH
Confidence 2 23588999999988874 442 8999999999999988743
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=557.07 Aligned_cols=497 Identities=26% Similarity=0.375 Sum_probs=419.7
Q ss_pred CCCHHHHHhccCCCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeE
Q 037622 41 LLDVDSFIFSHKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIV 120 (560)
Q Consensus 41 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 120 (560)
..++.+++.++++++++|++++ ++++||+||+++++++|..|.+ .|+++|++|+++++|+++++++++||+++|+++
T Consensus 24 ~~~~~~~~~~~a~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~-~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~ 100 (536)
T PRK10946 24 DLPLTDILTRHAASDAIAVICG--ERQFSYRELNQASDNLACSLRR-QGIKPGDTALVQLGNVAEFYITFFALLKLGVAP 100 (536)
T ss_pred CccHHHHHHHhhCCCCeEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCChHHHHHHHHHHHHcCeEE
Confidence 3688999988888889999987 7899999999999999999999 799999999999999999999999999999988
Q ss_pred eccCCCCCHHHHHHHHHhcCCceEEEEeeccc--------hHHhhhcCC-CCEEEecCCCcccccCCCcccHHHhhcccC
Q 037622 121 IPMNPLLSVSEIKKQVTLCKTKISLAFTIYEN--------VDKLRSWGT-TPVVAVPENLVNDFKEGRFSDFHKLIAGKF 191 (560)
Q Consensus 121 v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~--------~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (560)
+++.+.....++..+++.+++ ++++++... ...+..... ...+..... .....+.+.+....
T Consensus 101 v~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 171 (536)
T PRK10946 101 VNALFSHQRSELNAYASQIEP--ALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLND-------DGEHSLDDAINHPA 171 (536)
T ss_pred ecCCccccHHHHHHHHhhcCC--CEEEEeccccccchHHHHHHHHhhCCCceEEEEecC-------CCCccHHHHhhCcc
Confidence 877777778889999999999 888876542 122222111 222222211 11122333333322
Q ss_pred CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHH-HHHHH
Q 037622 192 DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSL-FALGL 270 (560)
Q Consensus 192 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~ 270 (560)
.........++++++++|||||||.||+|+++|.++...+..... ...+..++++++.+|++|.+++.. .++.+
T Consensus 172 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~-----~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~ 246 (536)
T PRK10946 172 EDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVE-----ICGFTPQTRYLCALPAAHNYPMSSPGALGV 246 (536)
T ss_pred cccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHH-----hcCCCCCceEEEecCccccccchhhhHHHH
Confidence 222233446789999999999999999999999999998877665 456788999999999999988753 57788
Q ss_pred hhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCCC
Q 037622 271 LSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPH 349 (560)
Q Consensus 271 l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~ 349 (560)
+..|+++++.+.+++..+++.++++++|++.++|.++..+++.... .....++++|.+++||+++++++.+.+.+.+ +
T Consensus 247 l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g 325 (536)
T PRK10946 247 FLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL-G 325 (536)
T ss_pred hhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhc-C
Confidence 9999999998888999999999999999999999999999865211 2234567899999999999999999999988 8
Q ss_pred CeeecccchhhcccccccCCCCCCCCccccccccc-CCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhh
Q 037622 350 VDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLA-PNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMS 428 (560)
Q Consensus 350 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~-p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~ 428 (560)
+++++.||+||++..... .........+++|+|+ |++.++++| +++++++.|+.|||+++|+.++.||+++++.+..
T Consensus 326 ~~~~~~YG~tE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~ 403 (536)
T PRK10946 326 CQLQQVFGMAEGLVNYTR-LDDSDERIFTTQGRPMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNAS 403 (536)
T ss_pred CeEEEeecccccceeeec-CCCccccccccCCcccCCCceEEEEC-CCCCCCCCCCccEEEEecCccchhhcCCcccchh
Confidence 999999999996644332 2222233567899999 899999999 6789999999999999999999999999999999
Q ss_pred ccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCC
Q 037622 429 TIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDG 508 (560)
Q Consensus 429 ~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 508 (560)
.|+.++||+|||+|++|++|.+++.||.+|+++.+|++|++.+||++|.++|+|.++++++.+++..|+.+++++++.++
T Consensus 404 ~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~ 483 (536)
T PRK10946 404 AFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP 483 (536)
T ss_pred hcccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC
Confidence 99889999999999999999999999999999999999999999999999999999999999999888999999987764
Q ss_pred CCCCHHHHHHHHHhc-cCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 509 STLTEAAVIDYLAQR-VAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 509 ~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
.+.+++++++++. +++|++|..+++++++|+|++||++|++|++++.++
T Consensus 484 --~~~~~l~~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~ 533 (536)
T PRK10946 484 --LKAVQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 533 (536)
T ss_pred --CCHHHHHHHHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhh
Confidence 6788999999886 999999999999999999999999999999998765
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=551.51 Aligned_cols=478 Identities=31% Similarity=0.478 Sum_probs=410.4
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
+|+++.|.+++. ++++|+++. ++.+||+||.++++++|++|.+ .|+++||+|+++++|+.++++++|||+++|++
T Consensus 2 ~~~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~-~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~ 78 (483)
T PRK03640 2 ETMPNWLKQRAFLTPDRTAIEFE--EKKVTFMELHEAVVSVAGKLAA-LGVKKGDRVALLMKNGMEMILVIHALQQLGAV 78 (483)
T ss_pred CcHHHHHHHHHHhCCCceEEEeC--CeeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHhCCcE
Confidence 688888887764 669999987 6899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhccc-CCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGK-FDLVERPV 198 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 198 (560)
++|+++.++.+++..+++.+++ +.+++++........... ..+.++.... ........
T Consensus 79 ~v~i~~~~~~~~~~~~~~~~~~--~~vi~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 137 (483)
T PRK03640 79 AVLLNTRLSREELLWQLDDAEV--KCLITDDDFEAKLIPGIS-------------------VKFAELMNGPKEEAEIQEE 137 (483)
T ss_pred EEecCcCCCHHHHHHHHHhCCC--CEEEEcchhhHHHhhhcc-------------------ccHHHHhhcccccCCCCCC
Confidence 9999999999999999999999 888887654433322110 0122222211 11112233
Q ss_pred CCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEE
Q 037622 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278 (560)
Q Consensus 199 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 278 (560)
..++++++++|||||||.||+|+++|.++...+..... ..++.++|++++.+|++|++++. .++.++..|++++
T Consensus 138 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~~ 211 (483)
T PRK03640 138 FDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSAL-----NLGLTEDDCWLAAVPIFHISGLS-ILMRSVIYGMRVV 211 (483)
T ss_pred CCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHH-----hcCCCcCcEEEEecCHHHHHHHH-HHHHHHhcCCEEE
Confidence 46789999999999999999999999998876655544 45678999999999999999985 6788899999999
Q ss_pred EeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccch
Q 037622 279 VMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGM 358 (560)
Q Consensus 279 ~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~ 358 (560)
+.+..++..+++.++++++|++.++|+++..|.+.... .....++|.+++||+++++.+.+.+.+. ++++++.||+
T Consensus 212 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~ 287 (483)
T PRK03640 212 LVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGE--GTYPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGM 287 (483)
T ss_pred ecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCc--cccCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeeecc
Confidence 99999999999999999999999999999999865221 1334689999999999999999998875 8999999999
Q ss_pred hhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceec
Q 037622 359 TESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHT 438 (560)
Q Consensus 359 tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~T 438 (560)
||++..+............+++|+|+|++++++.++ +++++.|+.|||+++||+++.||+++++.+...| .++||+|
T Consensus 288 tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~--~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~t 364 (483)
T PRK03640 288 TETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKD--GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKT 364 (483)
T ss_pred CcccccccccCcccccccCCCcccccCCcEEEEecC--CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH-hcCCeec
Confidence 998865443333323446789999999999999983 4789999999999999999999999999998888 5899999
Q ss_pred CceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHH
Q 037622 439 GDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVID 518 (560)
Q Consensus 439 GD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 518 (560)
||++++++||.+++.||++|++|.+|.+|++.+||+.+.++++|.++++++.+++..++.+++++++.. ..+.+++++
T Consensus 365 GDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ 442 (483)
T PRK03640 365 GDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSG--EVTEEELRH 442 (483)
T ss_pred cceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCC--CCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988887888888887543 567889999
Q ss_pred HHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 519 YLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 519 ~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
++++.|+++++|+.|++++++|+|++||++|++|++++++
T Consensus 443 ~~~~~l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 443 FCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred HHHHhccCCCCCcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence 9999999999999999999999999999999999999875
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=558.87 Aligned_cols=501 Identities=27% Similarity=0.409 Sum_probs=421.3
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.+++.+.++ ++++|+++. +++.+||+||+++++++|++|.+ .|+++||+|+++++|+++++++++||+++|++
T Consensus 23 ~~l~~~~~~~~~~~pd~~a~~~~-~~~~~Ty~~l~~~v~~la~~l~~-~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 100 (547)
T PRK06087 23 ASLADYWQQTARAMPDKIAVVDN-HGASYTYSALDHAASRLANWLLA-KGIEPGDRVAFQLPGWCEFTIIYLACLKVGAV 100 (547)
T ss_pred CCHHHHHHHHHHHCCCceEEEcC-CCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 578888776554 568999875 35899999999999999999999 89999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccc-----hHHhhh----cCC-CCEEEecCCCcccccCCCcccHHHhhcc
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYEN-----VDKLRS----WGT-TPVVAVPENLVNDFKEGRFSDFHKLIAG 189 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~-----~~~~~~----~~~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 189 (560)
++|+++.++.+++.++++.+++ ++++++... .+.+.. ... ..++..+.... ......+.+++..
T Consensus 101 ~v~l~~~~~~~~l~~~l~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 174 (547)
T PRK06087 101 SVPLLPSWREAELVWVLNKCQA--KMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAP----ATSSLSLSQIIAD 174 (547)
T ss_pred EeccchhcCHHHHHHHHHhcCC--eEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCC----CcCccCHHHHhcc
Confidence 9999999999999999999999 888886532 111111 111 23444433210 1112234444433
Q ss_pred cCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHH
Q 037622 190 KFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALG 269 (560)
Q Consensus 190 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~ 269 (560)
...........++++++|+|||||||.||+|+++|.++......+.. ...+.+++++++..|++|.+++...++.
T Consensus 175 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~-----~~~~~~~d~~l~~~pl~h~~g~~~~~~~ 249 (547)
T PRK06087 175 YEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCA-----RLNLTWQDVFMMPAPLGHATGFLHGVTA 249 (547)
T ss_pred CCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHH-----hcCCCCCCeEEEecchHHHHHHHHHHHH
Confidence 22211222346789999999999999999999999999887766554 4567889999999999999998778889
Q ss_pred HhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCC
Q 037622 270 LLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPH 349 (560)
Q Consensus 270 ~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~ 349 (560)
++..|+++++.+.+++..+++.++++++|+++++|+.+..+++. .......++++|.+++||+++++++.+.+.+. +
T Consensus 250 ~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~-~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~--~ 326 (547)
T PRK06087 250 PFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNL-LEKQPADLSALRFFLCGGTTIPKKVARECQQR--G 326 (547)
T ss_pred HHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhc-cccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc--C
Confidence 99999999999999999999999999999999998888777765 33344567899999999999999999988765 8
Q ss_pred CeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhc
Q 037622 350 VDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMST 429 (560)
Q Consensus 350 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~ 429 (560)
+++++.||+||++.+.............+++|.|++++.++++| +++.+++.|+.|||+++|+.++.||+++++.+...
T Consensus 327 ~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~ 405 (547)
T PRK06087 327 IKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARA 405 (547)
T ss_pred CcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCCCcCCCcceEEEecccccccccCCHHHHHHH
Confidence 99999999999988765443222223456789999999999999 67889999999999999999999999999999888
Q ss_pred cCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecC-C
Q 037622 430 IDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD-G 508 (560)
Q Consensus 430 ~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~ 508 (560)
++.++||+|||+++++++|.+++.||.+|+|+.+|++|+|.+||+++.++|+|.++++++.+++..|+.++++++..+ +
T Consensus 406 ~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~ 485 (547)
T PRK06087 406 LDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPH 485 (547)
T ss_pred hCCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCC
Confidence 888899999999999999999999999999999999999999999999999999999999999888999999999865 4
Q ss_pred CCCCHHHHHHHHH-hccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 509 STLTEAAVIDYLA-QRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 509 ~~~~~~~l~~~~~-~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
...+.+++.+++. +.++++++|..+.++++||+|.+||++|++|++.+.++
T Consensus 486 ~~~~~~~~~~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~ 537 (547)
T PRK06087 486 HSLTLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRR 537 (547)
T ss_pred CCCCHHHHHHHHHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHH
Confidence 4566788888875 57999999999999999999999999999999998775
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-67 Score=554.62 Aligned_cols=502 Identities=34% Similarity=0.531 Sum_probs=434.7
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.++++++...++ ++++|+.+. ++.+||+||+++++++|+.|.+ .|+++|++|+++++|+.+++++++||+++|++
T Consensus 6 ~~l~~~l~~~~~~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~ 82 (521)
T PRK06187 6 LTIGRILRHGARKHPDKEAVYFD--GRRTTYAELDERVNRLANALRA-LGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAV 82 (521)
T ss_pred CCHHHHHHHHHHHCCCceEEEeC--CceEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence 788888877765 458999887 6779999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC-----CCEEEecCCCcccccCCCcccHHHhhcccCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-----TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLV 194 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (560)
++|+++.++.+++..+++.+++ ++++++......+..... ..++..++... .........+.+++.......
T Consensus 83 ~v~~~~~~~~~~~~~~i~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 159 (521)
T PRK06187 83 LHPINIRLKPEEIAYILNDAED--RVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPA-APLAPEVGEYEELLAAASDTF 159 (521)
T ss_pred EEecccCCCHHHHHHHHHhcCC--eEEEEcchHHHHHHHHhhccCCccEEEEecCccc-cccccccccHHHHhhcCCccC
Confidence 9999999999999999999999 999999877665544322 23444433221 011223345555555444444
Q ss_pred CCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCC
Q 037622 195 ERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLG 274 (560)
Q Consensus 195 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G 274 (560)
......++++++++|||||||.||+|.++|.++......... ..++.+++++++..|++|.+++...+. ++..|
T Consensus 160 ~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~-~l~~G 233 (521)
T PRK06187 160 DFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCA-----WLKLSRDDVYLVIVPMFHVHAWGLPYL-ALMAG 233 (521)
T ss_pred CCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHH-----hhCCCCCCEEEEeCCchHHhhHHHHHH-HHHhC
Confidence 344556789999999999999999999999999987777665 567889999999999999999864444 99999
Q ss_pred CEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeec
Q 037622 275 PSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354 (560)
Q Consensus 275 ~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~ 354 (560)
+++++.+.+++..+++.++++++|.++++|++++.|.+. .......++++|.+++||+++++++++.+.+.| ++++++
T Consensus 234 ~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~-~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~~ 311 (521)
T PRK06187 234 AKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKA-PRAYFVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLVQ 311 (521)
T ss_pred CEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcC-cCCCccCcchhhEEEEcCcCCCHHHHHHHHHHh-Ccchhe
Confidence 999999988999999999999999999999999999876 333456788999999999999999999999999 899999
Q ss_pred ccchhhcccccccCCCCCC----CCcccccccccCCeEEEEEeCCCCccCCC--CCcceEEEecccchhhhcCCchhhhh
Q 037622 355 GYGMTESTAVGTRGFNTKK----FSKYFSVGLLAPNIQAKVVDWVNGCFLPP--GSTGELWLRGPGTMKEYINNADATMS 428 (560)
Q Consensus 355 ~YG~tE~~~~~~~~~~~~~----~~~~~~~G~~~p~~~~~v~d~~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~ 428 (560)
.||+||++.++........ ....+++|.|+|++.++|+| +++.+++. |+.|||+++++.++.||+++++.+..
T Consensus 312 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~ 390 (521)
T PRK06187 312 GYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAE 390 (521)
T ss_pred eeccCccCcccccCCcccccccccccCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHH
Confidence 9999999887665533222 12567899999999999999 46788888 99999999999999999999999988
Q ss_pred ccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCC
Q 037622 429 TIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDG 508 (560)
Q Consensus 429 ~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 508 (560)
.| .++||+|||+++++++|.+++.||.+|+++.+|.++++.+||+.+.++++|.+++|++.+++..++.+++++++.++
T Consensus 391 ~~-~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 469 (521)
T PRK06187 391 TI-DGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPG 469 (521)
T ss_pred Hh-hCCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCC
Confidence 88 46799999999999999999999999999999999999999999999999999999999988888899999998887
Q ss_pred CCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 509 STLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 509 ~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
...+.++++++++++++++.+|..++++++||+|++||++|++|++.|.+.
T Consensus 470 ~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~~ 520 (521)
T PRK06187 470 ATLDAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAEG 520 (521)
T ss_pred CCCCHHHHHHHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhcC
Confidence 777889999999999999999999999999999999999999999998763
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-67 Score=555.48 Aligned_cols=492 Identities=26% Similarity=0.381 Sum_probs=413.2
Q ss_pred CCHHHHHhccC--CCCceEEEEC--C--CCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 037622 42 LDVDSFIFSHK--HNGRTALVDS--L--SGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115 (560)
Q Consensus 42 ~~~~~~~~~~~--~~~~~a~~~~--~--~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 115 (560)
.|+.+.+.+.+ .++++|++.. . .++.+||+||+++++++|.+|.+ +|+++|++|+++++|+++++++++||++
T Consensus 22 ~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~~~~~~~la~~~ 100 (538)
T TIGR03208 22 RTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLAR-LGVGRGDVVSFQLPNRWEFTALYLACAR 100 (538)
T ss_pred CcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 47777776665 4668998752 1 24689999999999999999998 8999999999999999999999999999
Q ss_pred hCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccch-----HHhhhc---C-C-CCEEEecCCCcccccCCCcccHHH
Q 037622 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENV-----DKLRSW---G-T-TPVVAVPENLVNDFKEGRFSDFHK 185 (560)
Q Consensus 116 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~-----~~~~~~---~-~-~~vi~~~~~~~~~~~~~~~~~~~~ 185 (560)
+|++++|++|.++.+++.++++.+++ +++++++... ...... . . ..++..+.. ....+..
T Consensus 101 ~G~~~v~l~~~~~~~~l~~~l~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 170 (538)
T TIGR03208 101 IGAVLNPLMPIFRERELSFMLNHADS--KVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGD--------GDDSFDR 170 (538)
T ss_pred cCEEEeccCcccCHHHHHHHHHhcCC--eEEEEccccccccHHHHHHHHhccCCcceEEEEecCC--------CCcCHHH
Confidence 99999999999999999999999999 8888876432 111111 1 0 123333221 1112222
Q ss_pred hhcccC----CC----CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecCh
Q 037622 186 LIAGKF----DL----VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPM 257 (560)
Q Consensus 186 ~~~~~~----~~----~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 257 (560)
.+.... .. .......++++++++|||||||.||+|+++|.++...+..... ...+..++++++.+|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~-----~~~~~~~d~~l~~~pl 245 (538)
T TIGR03208 171 VLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAE-----RLELGGGDVILMASPM 245 (538)
T ss_pred HhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHh-----hcCCCCCCeEEEeCCc
Confidence 221110 00 1112346789999999999999999999999999888776665 4567889999999999
Q ss_pred hhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCH
Q 037622 258 FHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANS 337 (560)
Q Consensus 258 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~ 337 (560)
+|..++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+... .......++++|.+++||+++++
T Consensus 246 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~-~~~~~~~~~~l~~~~~gG~~~~~ 324 (538)
T TIGR03208 246 AHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRA-VKESGAPVPSLFTFLCAGAPIPG 324 (538)
T ss_pred hhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhc-hhccCCCCCcceEEEEcCCCCCH
Confidence 99999877889999999999999889999999999999999999999999998765 22234567899999999999999
Q ss_pred HHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchh
Q 037622 338 KIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMK 417 (560)
Q Consensus 338 ~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~ 417 (560)
++.+++.+.+ ++++++.||+||++.+++............++|+|+|+++++++| +++++++.|+.|||+++|+.++.
T Consensus 325 ~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~~g~~Gel~v~g~~~~~ 402 (538)
T TIGR03208 325 ILVERAWELL-GALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKLSQGETGRLLVRGCSNFG 402 (538)
T ss_pred HHHHHHHHHc-CCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCCCcCCCCcEEEEecCcccc
Confidence 9999999988 799999999999988766544322222346789999999999999 57889999999999999999999
Q ss_pred hhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCc
Q 037622 418 EYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGE 497 (560)
Q Consensus 418 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~ 497 (560)
||+++++.+. .+.++||+|||+|+++++|.++++||.+|+|+.+|++|+|.+||++|.++|+|.+++|++.+++..++
T Consensus 403 gy~~~~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~ 480 (538)
T TIGR03208 403 GYLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGE 480 (538)
T ss_pred cccCCccccc--ccCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCc
Confidence 9999998765 34689999999999999999999999999999999999999999999999999999999999988889
Q ss_pred eEEEEEEecCCCCCCHHHHHHHHHh-ccCCCCCcceEEEecCCCCCCCCcchHHHHHH
Q 037622 498 IPVAFVVRRDGSTLTEAAVIDYLAQ-RVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554 (560)
Q Consensus 498 ~~~~~v~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~ 554 (560)
.+++++++..+...+.+++.+++++ +++.+++|+.+++++++|+|++||++|++|++
T Consensus 481 ~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~~ 538 (538)
T TIGR03208 481 RACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLRE 538 (538)
T ss_pred eEEEEEEECCCCCCCHHHHHHHHHhcchhhccCCcEEEEeccCCCCCccccchHhhcC
Confidence 9999999887767788899999985 79999999999999999999999999999873
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-67 Score=559.60 Aligned_cols=500 Identities=26% Similarity=0.369 Sum_probs=399.0
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.+++.+.++ ++++|++.+ +.++||+||.++++++|.+|.+ +|+++||+|+|+++|++++++++|||+++|++
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~a~~L~~-~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~ 90 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIYG--KTRFTWPQTYDRCCRLAASLIS-LNITKNDVVSVLAPNTPAMYEMHFAVPMAGAV 90 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEEC--CcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcE
Confidence 567776666554 569999987 7899999999999999999999 89999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC----------CCCEEEecCCCcccccCCCcccHHHhhcc
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG----------TTPVVAVPENLVNDFKEGRFSDFHKLIAG 189 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~----------~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 189 (560)
++|++|.++.+++.++++.+++ +++++++.....+.... ...++.++.............++.++...
T Consensus 91 ~vpl~~~~~~~~l~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (579)
T PLN03102 91 LNPINTRLDATSIAAILRHAKP--KILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQR 168 (579)
T ss_pred EeeccccCCHHHHHHHHhccCC--eEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcccccCHHHHHhc
Confidence 9999999999999999999999 99998876654443221 12344443211000001112234444332
Q ss_pred cCCCC-C----CCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHH
Q 037622 190 KFDLV-E----RPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLS 264 (560)
Q Consensus 190 ~~~~~-~----~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~ 264 (560)
..... . .....++++++|+|||||||.||+|+++|.++......... ...+...+++++.+|++|..++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~-----~~~~~~~~~~l~~~pl~h~~g~~ 243 (579)
T PLN03102 169 GEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAII-----GWEMGTCPVYLWTLPMFHCNGWT 243 (579)
T ss_pred cCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHh-----hcCCCCCCeEEecCChhhhcchh
Confidence 21111 0 11235689999999999999999999999997544333222 23456678899999999999985
Q ss_pred HHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHH
Q 037622 265 LFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFV 344 (560)
Q Consensus 265 ~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~ 344 (560)
..+.++..|+++++...+++..+++.++++++|++.++|+++..|.+. ........++++.+++||+++++.+.+++.
T Consensus 244 -~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~ 321 (579)
T PLN03102 244 -FTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKG-NSLDLSPRSGPVHVLTGGSPPPAALVKKVQ 321 (579)
T ss_pred -HHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhC-cccccCCcccceEEEECCCCCCHHHHHHHH
Confidence 556678889999988888899999999999999999999999999875 332333456788899999999999999987
Q ss_pred HhCCCCeeecccchhhcccccccCCCCCC------------CCcccccccccCCeEEEEEeCCCCccCCC--CCcceEEE
Q 037622 345 GAFPHVDFIQGYGMTESTAVGTRGFNTKK------------FSKYFSVGLLAPNIQAKVVDWVNGCFLPP--GSTGELWL 410 (560)
Q Consensus 345 ~~~~~~~i~~~YG~tE~~~~~~~~~~~~~------------~~~~~~~G~~~p~~~~~v~d~~~~~~~~~--g~~Gel~v 410 (560)
+ + ++++++.||+||+++.++....... ....+..+.+++ .+.+.+.+++++++. ++.|||++
T Consensus 322 ~-~-g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v 397 (579)
T PLN03102 322 R-L-GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVI 397 (579)
T ss_pred H-c-CCeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceEEEE
Confidence 6 5 8899999999999865433211100 011233334444 455666566777764 36799999
Q ss_pred ecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcc
Q 037622 411 RGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGA 490 (560)
Q Consensus 411 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~ 490 (560)
+|++++.||+++|+.+...| .+|||+|||+|++|+||++++.||.+|+|+.+|++|+|.+||+++.++|.|.+++|++.
T Consensus 398 ~g~~~~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~ 476 (579)
T PLN03102 398 KGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAM 476 (579)
T ss_pred ECcchhhhhcCChhhhHhhh-ccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEec
Confidence 99999999999999999888 57999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEEEecCCCCC----------CHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 491 MDKVLGEIPVAFVVRRDGSTL----------TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 491 ~~~~~~~~~~~~v~~~~~~~~----------~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
+++..++.++++|++.++... ...+++++++++|++|++|..++++++||+|++||++|++|++++.+
T Consensus 477 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~ 554 (579)
T PLN03102 477 PHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKG 554 (579)
T ss_pred cCccccceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccccHHHHHHHHHH
Confidence 999888999999998765432 35689999999999999999999999999999999999999998765
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-67 Score=549.88 Aligned_cols=477 Identities=30% Similarity=0.467 Sum_probs=405.1
Q ss_pred CCCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHH
Q 037622 52 KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSE 131 (560)
Q Consensus 52 ~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 131 (560)
.+++++|+++...+..+||+||.++++++|.+|.+ +|+++||+|+|+++|++++++++|||+++|++++|+++.++.++
T Consensus 7 ~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~-~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~ 85 (488)
T PRK09088 7 LQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRR-RGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASE 85 (488)
T ss_pred hCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccCCHHH
Confidence 45779999875457899999999999999999998 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCC
Q 037622 132 IKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSS 211 (560)
Q Consensus 132 l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 211 (560)
+.++++.+++ +++++++...... ...+.++ .+....... .........++++++++|||
T Consensus 86 ~~~~~~~~~~--~~ii~~~~~~~~~-----~~~~~~~-------------~~~~~~~~~-~~~~~~~~~~~~~~~i~~TS 144 (488)
T PRK09088 86 LDALLQDAEP--RLLLGDDAVAAGR-----TDVEDLA-------------AFIASADAL-EPADTPSIPPERVSLILFTS 144 (488)
T ss_pred HHHHHHhCCC--CEEEEcchhhccc-----ccccchh-------------hhhhhcccc-ccccCCCCCCCCceEEEeCC
Confidence 9999999999 8888875432210 0000000 000000100 01111233567899999999
Q ss_pred CCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHH
Q 037622 212 GTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKV 291 (560)
Q Consensus 212 GTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 291 (560)
||||.||+|.++|+++...+..+.. ......+|++++.+|++|++++...+..++..|+++++.+.+++..++..
T Consensus 145 GTTG~PK~v~~s~~~l~~~~~~~~~-----~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~ 219 (488)
T PRK09088 145 GTSGQPKGVMLSERNLQQTAHNFGV-----LGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGR 219 (488)
T ss_pred CCCCCCcEEEEehHHHHHHHHHHHH-----hhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHH
Confidence 9999999999999999877766654 34567899999999999999998788889999999999988899999988
Q ss_pred HHH--hCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCC
Q 037622 292 IDK--YGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGF 369 (560)
Q Consensus 292 l~~--~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~ 369 (560)
+.+ +++|+++++|+++..+.+. .......++++|.+++||++++.+..+.+.+. ++++++.||+||++.+.....
T Consensus 220 ~~~~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~ 296 (488)
T PRK09088 220 LGDPALGITHYFCVPQMAQAFRAQ-PGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSV 296 (488)
T ss_pred HHhhccCCcEEeeHHHHHHHHHhC-cCcCccccccceEEEecCCCCCHHHHHHHHHh--CCceeeeecccccccccccCC
Confidence 864 7899999999999998764 33334567899999999999999998888865 789999999999987543221
Q ss_pred C-CCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCC
Q 037622 370 N-TKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDG 448 (560)
Q Consensus 370 ~-~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g 448 (560)
. .....+.+++|.|+|+++++++| +++++++.|+.|||+++|++++.||+++++.+...++.+|||+|||+|+++++|
T Consensus 297 ~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g 375 (488)
T PRK09088 297 DCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADG 375 (488)
T ss_pred CcccccccCCccccCCCCcEEEEEC-CCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCC
Confidence 1 11123567899999999999999 678899999999999999999999999999999888889999999999999999
Q ss_pred cEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCC
Q 037622 449 YLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYK 528 (560)
Q Consensus 449 ~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~ 528 (560)
.+++.||.+|+|+.+|.+|++.+||++|.++|+|.+++|++.+++..|+..++++++.++...+.+++.+++++++++++
T Consensus 376 ~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~ 455 (488)
T PRK09088 376 FFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLAKYK 455 (488)
T ss_pred cEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCCHHHHHHHHHhhCcCCC
Confidence 99999999999999999999999999999999999999999998877888888888877666678899999999999999
Q ss_pred CcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 529 KVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 529 ~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+|..++++++||+|++||++|++|++++.+.
T Consensus 456 ~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~~ 486 (488)
T PRK09088 456 VPKHLRLVDALPRTASGKLQKARLRDALAAG 486 (488)
T ss_pred CCCEEEEcccCCCCCCCceeHHHHHHHHHhc
Confidence 9999999999999999999999999998753
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-67 Score=557.50 Aligned_cols=499 Identities=23% Similarity=0.306 Sum_probs=396.4
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.+.+.+.++ ++++|+++...++.+||+||.++++++|+.|.+ +|+++|++|+|+++|++++++++|||+++|++
T Consensus 14 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v 92 (540)
T PRK05857 14 STVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRA-QSVSRGSRVLVISDNGPETYLSVLACAKLGAI 92 (540)
T ss_pred cchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHH-hCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeE
Confidence 567777777765 558999865445789999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhc----CCCCEEEecCCCcccccCCCcccHHHhhcccCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSW----GTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVE 195 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~----~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (560)
++|+++.++.+++.++++.+++ +++++++......... ....++.++... ... ......... ....
T Consensus 93 ~v~l~~~~~~~~l~~~~~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~-~~~~ 162 (540)
T PRK05857 93 AVMADGNLPIAAIERFCQITDP--AAALVAPGSKMASSAVPEALHSIPVIAVDIAA-----VTR--ESEHSLDAA-SLAG 162 (540)
T ss_pred EEecCccCCHHHHHHHHHhcCC--ceEEEeccchhccccccccccccceeEeeccc-----ccc--ccccccccc-cccc
Confidence 9999999999999999999999 8888887643221111 112233322111 000 000000000 0111
Q ss_pred CCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCC
Q 037622 196 RPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGP 275 (560)
Q Consensus 196 ~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~ 275 (560)
.....++++++++|||||||.||+|.++|+++.++....... ...+.....+++.+..+|++|..++. ..+.++..|+
T Consensus 163 ~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~h~~~l~-~~~~~l~~G~ 240 (540)
T PRK05857 163 NADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKE-GLNWVTWVVGETTYSPLPATHIGGLW-WILTCLMHGG 240 (540)
T ss_pred ccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhc-cccccccccCceeeecCCccccchHH-HHHHHhhcce
Confidence 234467899999999999999999999999998765443221 00123455678999999999999985 6778899999
Q ss_pred EEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecc
Q 037622 276 SVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQG 355 (560)
Q Consensus 276 ~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 355 (560)
++++ .+.++..+++.++++++|.++++|++++.|.+. ......+++++|.+++||++++....+ +.+.+ ++++++.
T Consensus 241 ~~v~-~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~gG~~~~~~~~~-~~~~~-g~~i~~~ 316 (540)
T PRK05857 241 LCVT-GGENTTSLLEILTTNAVATTCLVPTLLSKLVSE-LKSANATVPSLRLVGYGGSRAIAADVR-FIEAT-GVRTAQV 316 (540)
T ss_pred eEEe-cCCChhHHHHHHHhcCcceEEeChHHHHHHHhc-cccCCCcCccceEEEEcCccCCchhHH-HHHHh-CCeeecc
Confidence 8876 456789999999999999999999999999876 333446788999999999999988775 44566 8999999
Q ss_pred cchhhcccccccCCCCCC---CCcccccccccCCeEEEEEeCCCCccC-----CCCCcceEEEecccchhhhcCCchhhh
Q 037622 356 YGMTESTAVGTRGFNTKK---FSKYFSVGLLAPNIQAKVVDWVNGCFL-----PPGSTGELWLRGPGTMKEYINNADATM 427 (560)
Q Consensus 356 YG~tE~~~~~~~~~~~~~---~~~~~~~G~~~p~~~~~v~d~~~~~~~-----~~g~~Gel~v~~~~~~~gy~~~~~~~~ 427 (560)
||+||++........... ..+.+++|+|++|++++|+|+++..++ +.|+.|||+|+|++++.||+++++.+.
T Consensus 317 YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~ 396 (540)
T PRK05857 317 YGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTA 396 (540)
T ss_pred cCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchh
Confidence 999999865443322211 224678999999999999995444333 457899999999999999999999998
Q ss_pred hccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecC
Q 037622 428 STIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD 507 (560)
Q Consensus 428 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 507 (560)
+.| .+|||+|||+|++|++|++++.||.+|+||.+|++|+|.|||++|..||+|.+++|++.++...++.++++++..+
T Consensus 397 ~~~-~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~ 475 (540)
T PRK05857 397 EVL-IDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASA 475 (540)
T ss_pred hhc-CCCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCC
Confidence 888 5789999999999999999999999999999999999999999999999999999999999888888888887654
Q ss_pred CCCC-CHH----HHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 508 GSTL-TEA----AVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 508 ~~~~-~~~----~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
.... ..+ .+.+++++.++++++|+.+++++++|+|++||++|++|++.+..
T Consensus 476 ~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~ 531 (540)
T PRK05857 476 ELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATA 531 (540)
T ss_pred CCChhhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhh
Confidence 3221 122 34455667799999999999999999999999999999998864
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=568.52 Aligned_cols=490 Identities=23% Similarity=0.319 Sum_probs=395.6
Q ss_pred CCHHHHHhccC--CCCceEEEECC-------CCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHH
Q 037622 42 LDVDSFIFSHK--HNGRTALVDSL-------SGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLA 112 (560)
Q Consensus 42 ~~~~~~~~~~~--~~~~~a~~~~~-------~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA 112 (560)
.|+.+++.+.+ .++++|+++.. ..+.+||+||.++++++|++|.+ . +++||+|+|+++|++++++++||
T Consensus 21 ~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~-~~~gd~V~i~~~n~~e~~~~~lA 98 (631)
T PRK07769 21 TNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQ-V-TKPGDRVAILAPQNLDYLIAFFG 98 (631)
T ss_pred CCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHH-h-cCCCCEEEEEcCCChHHHHHHHH
Confidence 68888887655 45689988531 12589999999999999999988 5 89999999999999999999999
Q ss_pred HHHhCCeEecc-CCCCC--HHHHHHHHHhcCCceEEEEeeccchHHhhhcC-------CCCEEEecCCCcccccCCCccc
Q 037622 113 LLYLGAIVIPM-NPLLS--VSEIKKQVTLCKTKISLAFTIYENVDKLRSWG-------TTPVVAVPENLVNDFKEGRFSD 182 (560)
Q Consensus 113 ~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~-------~~~vi~~~~~~~~~~~~~~~~~ 182 (560)
|+++|++++|+ ++..+ .+++.++++.+++ +++++++.....+.... ...++.++...
T Consensus 99 ~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 165 (631)
T PRK07769 99 ALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTP--SAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVP----------- 165 (631)
T ss_pred HHHcCCEEEeeCCCCccchHHHHHHHHHhCCC--CEEEEChHHHHHHHHHHhhccccccceEEEccccc-----------
Confidence 99999999999 55554 6889999999999 99998876554433211 01222222100
Q ss_pred HHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHh
Q 037622 183 FHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYG 262 (560)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 262 (560)
+.. ..........++++++|+|||||||.||+|+++|.++...+..... ...+..+++++.++|++|.+|
T Consensus 166 --~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~d~~l~~~Pl~h~~g 235 (631)
T PRK07769 166 --DEV---GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVID-----ALEGQEGDRGVSWLPFFHDMG 235 (631)
T ss_pred --ccc---ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHH-----HcCCCCcceEEEeCCCcCchh
Confidence 000 0011112346789999999999999999999999999887776654 456788999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCC--c--CHHHHHHHHHHhCc---ceeccCcHHHHHHHHhh--hc--cCCCCCCccceeecc
Q 037622 263 LSLFALGLLSLGPSVVVMRR--F--EASEMLKVIDKYGV---THFPVVPPILMALTKAA--KG--LCGNSLKSLKQVSSG 331 (560)
Q Consensus 263 ~~~~~~~~l~~G~~~v~~~~--~--~~~~~~~~l~~~~~---t~l~~~P~~~~~l~~~~--~~--~~~~~l~~lr~~~~~ 331 (560)
+. ..+.++..|+++++.++ + ++..+++.+.++++ +.+.++|+++..+.... .. ....+++++|.+++|
T Consensus 236 l~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~g 314 (631)
T PRK07769 236 LI-TVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNG 314 (631)
T ss_pred hH-HHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEec
Confidence 96 45566778989888753 3 88999999999886 78999999987776431 11 113467899999999
Q ss_pred cCCCCHHHHHHHHHhCC-----CCeeecccchhhcccccccCCCCCC-------------------------CCcccccc
Q 037622 332 AAPANSKIIEDFVGAFP-----HVDFIQGYGMTESTAVGTRGFNTKK-------------------------FSKYFSVG 381 (560)
Q Consensus 332 g~~~~~~~~~~~~~~~~-----~~~i~~~YG~tE~~~~~~~~~~~~~-------------------------~~~~~~~G 381 (560)
|+++++++.++|.+.|+ ...+++.||+||++.+++....... .....++|
T Consensus 315 g~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G 394 (631)
T PRK07769 315 SEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAG 394 (631)
T ss_pred cCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCC
Confidence 99999999999999872 3469999999998876554322110 01235799
Q ss_pred cccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccC-----------------CCCceecCceEEE
Q 037622 382 LLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID-----------------KEGWLHTGDIAYF 444 (560)
Q Consensus 382 ~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------------~~~~~~TGD~~~~ 444 (560)
+|+|+..++++|++++++++.|+.|||+++||+++.||+++++.|.+.|. .+|||+|||+|++
T Consensus 395 ~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~ 474 (631)
T PRK07769 395 KVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVY 474 (631)
T ss_pred CcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccE
Confidence 99999999999987899999999999999999999999999999988773 2489999999999
Q ss_pred ccCCcEEEEccccceeeecceecChHHHHHHHhc-CCCccc--EEEEcccC-------------------CCCCceEEEE
Q 037622 445 DEDGYLYIVDRLKEVIKYNGYQISPADLETVLIC-HPEILD--VAVTGAMD-------------------KVLGEIPVAF 502 (560)
Q Consensus 445 ~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~-~~~v~~--~~v~~~~~-------------------~~~~~~~~~~ 502 (560)
+||+++|+||.||+||++|++|+|.|||++|.+ ||.|.+ ++|+++++ +..++.++++
T Consensus 475 -~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~ 553 (631)
T PRK07769 475 -FDGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIV 553 (631)
T ss_pred -ECCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEE
Confidence 499999999999999999999999999999996 899998 89999988 4577889999
Q ss_pred EEecCC-CCCCHHHHHHHHHhccCC-CC-CcceEEEec--CCCCCCCCcchHHHHHHHHhc
Q 037622 503 VVRRDG-STLTEAAVIDYLAQRVAP-YK-KVRRVVFTK--SIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 503 v~~~~~-~~~~~~~l~~~~~~~l~~-~~-~p~~i~~~~--~lP~t~~GKi~r~~L~~~~~~ 558 (560)
|++.++ ...+.++|.++|+++|+. ++ .|+.+++++ +||+|++|||+|++|++.+.+
T Consensus 554 v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~ 614 (631)
T PRK07769 554 AERAPGAHKLDPQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLD 614 (631)
T ss_pred EEecCccccccHHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHc
Confidence 998776 356788999999999985 56 488888886 799999999999999998764
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-67 Score=554.25 Aligned_cols=498 Identities=26% Similarity=0.396 Sum_probs=416.2
Q ss_pred CCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 41 LLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 41 ~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
..|+.+++.+.++ ++++|++++ ++++||+||.++++++|..|.+ .|+++|++|+|+++|+++++++++||+++|+
T Consensus 6 ~~~~~~~~~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~ 82 (528)
T PRK07470 6 VMNLAHFLRQAARRFPDRIALVWG--DRSWTWREIDARVDALAAALAA-RGVRKGDRILVHSRNCNQMFESMFAAFRLGA 82 (528)
T ss_pred CCCHHHHHHHHHHHCCCceEEEEC--CccccHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHHHhCCe
Confidence 3677787776554 569999886 7899999999999999999999 7999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC----C-CCEEEecCCCcccccCCCcccHHHhhcccC-C
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG----T-TPVVAVPENLVNDFKEGRFSDFHKLIAGKF-D 192 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~----~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 192 (560)
+++++++.++.+++.++++.+++ +.++++........... . ..++.+.... ....+.++..... .
T Consensus 83 ~~v~l~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 153 (528)
T PRK07470 83 VWVPTNFRQTPDEVAYLAEASGA--RAMICHADFPEHAAAVRAASPDLTHVVAIGGAR-------AGLDYEALVARHLGA 153 (528)
T ss_pred EEEecCccCCHHHHHHHHHhcCc--eEEEEcchhHHHHHHHHhhCCcCceEEEeCCCc-------ccccHHHHHhcCCCC
Confidence 99999999999999999999999 99998876544332211 1 2233333211 1223444433221 1
Q ss_pred CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhh
Q 037622 193 LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLS 272 (560)
Q Consensus 193 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~ 272 (560)
........++++++|+|||||||.||+|+++|.++...+....... .....+.|+++.++|++|..++. .++ .+.
T Consensus 154 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~-~~~-~~~ 228 (528)
T PRK07470 154 RVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHGAGIH-QLC-QVA 228 (528)
T ss_pred CCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhHHHHH-HHH-HHh
Confidence 1222345678999999999999999999999999876554432211 22457789999999999999984 443 567
Q ss_pred CCCEEEEeC--CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCC
Q 037622 273 LGPSVVVMR--RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHV 350 (560)
Q Consensus 273 ~G~~~v~~~--~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~ 350 (560)
.|++.++.+ .+++..+++.++++++|++.++|++++.+++. .......++++|.+++||+++++.+.+++.+.+ +.
T Consensus 229 ~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~ 306 (528)
T PRK07470 229 RGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEH-PAVDRYDHSSLRYVIYAGAPMYRADQKRALAKL-GK 306 (528)
T ss_pred cCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhC-cCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHh-Cc
Confidence 777776665 47899999999999999999999999999876 444445678999999999999999999999888 78
Q ss_pred eeecccchhhcccccccCCCC------CCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCch
Q 037622 351 DFIQGYGMTESTAVGTRGFNT------KKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNAD 424 (560)
Q Consensus 351 ~i~~~YG~tE~~~~~~~~~~~------~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~ 424 (560)
++++.||+||++..++..... ......+++|.|+++++++++| +++++++.|+.|||+++|+.++.||+++++
T Consensus 307 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~ 385 (528)
T PRK07470 307 VLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGPAVFAGYYNNPE 385 (528)
T ss_pred HHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhhcCCHH
Confidence 899999999998765543211 0122457899999999999999 578899999999999999999999999999
Q ss_pred hhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEE
Q 037622 425 ATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVV 504 (560)
Q Consensus 425 ~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 504 (560)
.+...| .++||+|||+++++++|++++.||.||+||.+|++|+|.+||+++.++|+|.+++|++.+++..++.++++++
T Consensus 386 ~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~ 464 (528)
T PRK07470 386 ANAKAF-RDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCV 464 (528)
T ss_pred HHHhhh-cCCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEE
Confidence 998887 5899999999999999999999999999999999999999999999999999999999999888888899998
Q ss_pred ecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 505 RRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 505 ~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
..++...+.++++++|++.|+++++|..++++++||+|++||++|++|+++++++
T Consensus 465 ~~~~~~~~~~~~~~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 519 (528)
T PRK07470 465 ARDGAPVDEAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEER 519 (528)
T ss_pred ECCCCCCCHHHHHHHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhc
Confidence 8777667889999999999999999999999999999999999999999998764
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-67 Score=553.19 Aligned_cols=495 Identities=26% Similarity=0.389 Sum_probs=417.4
Q ss_pred HHHHHhccC--CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEe
Q 037622 44 VDSFIFSHK--HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVI 121 (560)
Q Consensus 44 ~~~~~~~~~--~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 121 (560)
+++++...+ .++++|+.+. ++++||+||++++.++|.+|.+ .|+++|++|+++++|+.+++++++||+++|++++
T Consensus 2 ~~~~~~~~~~~~p~~~a~~~~--~~~~ty~~l~~~v~~~a~~l~~-~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v 78 (515)
T TIGR03098 2 LHHLLEDAAARLPDATALVHH--DRTLTYAALSERVLALASGLRG-LGLARGERVAIYLDKRLETVTAMFGAALAGGVFV 78 (515)
T ss_pred HHHHHHHHHHHCCCCeEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEE
Confidence 344554444 4668999987 6899999999999999999998 7999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC-----CCEEEecCCCcccccCCCcccHHHhhcccCCCCCC
Q 037622 122 PMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-----TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVER 196 (560)
Q Consensus 122 ~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (560)
|+++.++.+++..+++.+++ ++++++......+..... ..++.+++.............++++....... ..
T Consensus 79 ~l~~~~~~~~~~~~l~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 155 (515)
T TIGR03098 79 PINPLLKAEQVAHILADCNV--RLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWPKLLALGDAD-PP 155 (515)
T ss_pred eCCCCCCHHHHHHHHHcCCC--eEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccHHHhhcccccc-cc
Confidence 99999999999999999999 999988766554432211 23444443221111112233444443322211 22
Q ss_pred CCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCE
Q 037622 197 PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPS 276 (560)
Q Consensus 197 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~ 276 (560)
.....+++++++|||||||.||+|.+||.++...+..... ...+..+|++++.+|++|.+++. .++.++..|++
T Consensus 156 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~ 229 (515)
T TIGR03098 156 HPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVAT-----YLENRPDDRLLAVLPLSFDYGFN-QLTTAFYVGAT 229 (515)
T ss_pred CCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHH-----HhCCCcccEEEEECchhhHhHHH-HHHHHHHcCCE
Confidence 2345678999999999999999999999999988776665 45678899999999999999985 78899999999
Q ss_pred EEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeeccc
Q 037622 277 VVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGY 356 (560)
Q Consensus 277 ~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~Y 356 (560)
+++.+.+++..+++.++++++|++.++|+++..|.+. ......+.++|.+++||+++++++.+.+.+.+++..+++.|
T Consensus 230 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--~~~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~Y 307 (515)
T TIGR03098 230 VVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQL--DWPESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMY 307 (515)
T ss_pred EEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhc--ccCCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeee
Confidence 9999989999999999999999999999999999764 22224678899999999999999999999999889999999
Q ss_pred chhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCC----
Q 037622 357 GMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDK---- 432 (560)
Q Consensus 357 G~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~---- 432 (560)
|+||++....... .....+++++|+|+|+++++++| +++++++.|+.|||+++|+.++.||+++++.+...+..
T Consensus 308 G~tE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~ 385 (515)
T TIGR03098 308 GLTEAFRSTYLPP-EEVDRRPDSIGKAIPNAEVLVLR-EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPR 385 (515)
T ss_pred ccccccceEeccc-ccccCCCCCcceecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCc
Confidence 9999876544322 22234678999999999999999 57889999999999999999999999999988766532
Q ss_pred -------CCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEe
Q 037622 433 -------EGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVR 505 (560)
Q Consensus 433 -------~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 505 (560)
++||+|||+|+++++|.+++.||.+|+|+.+|.+|+|.+||+++.++|.|.+++|++.+++..++.++++++.
T Consensus 386 ~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~ 465 (515)
T TIGR03098 386 PGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTP 465 (515)
T ss_pred cccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEe
Confidence 3489999999999999999999999999999999999999999999999999999999999889999999987
Q ss_pred cCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHH
Q 037622 506 RDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554 (560)
Q Consensus 506 ~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~ 554 (560)
..+...+.++++++++++|+++++|..++++++||+|.+||++|++|++
T Consensus 466 ~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 466 PGGEELDRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA 514 (515)
T ss_pred CCCCCCCHHHHHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence 7666778899999999999999999999999999999999999999975
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-68 Score=569.41 Aligned_cols=510 Identities=22% Similarity=0.273 Sum_probs=391.8
Q ss_pred CCCCHHHHHhccCC--CCceEEEE-----CCCC--ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHH
Q 037622 40 SLLDVDSFIFSHKH--NGRTALVD-----SLSG--YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIF 110 (560)
Q Consensus 40 ~~~~~~~~~~~~~~--~~~~a~~~-----~~~~--~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~ 110 (560)
...|+.++|.+.++ ++++|+.. +..+ ..+||+||.++++++|.+|.+ +|+++||+|+|+++|+++|++++
T Consensus 41 ~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~-~Gv~~gd~Vai~~~n~~e~~~~~ 119 (660)
T PLN02861 41 DIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRS-RGVNPGDRCGIYGSNCPEWIIAM 119 (660)
T ss_pred CCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHH
Confidence 34688888887664 55888853 1112 479999999999999999999 89999999999999999999999
Q ss_pred HHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC------CCCEEEecCCCcc---c--ccCCC
Q 037622 111 LALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG------TTPVVAVPENLVN---D--FKEGR 179 (560)
Q Consensus 111 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~------~~~vi~~~~~~~~---~--~~~~~ 179 (560)
|||+++|++++|+++.++.+++.++++.+++ ++++++......+.... -..++.+++.... . .....
T Consensus 120 lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~--~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 197 (660)
T PLN02861 120 EACNSQGITYVPLYDTLGANAVEFIINHAEV--SIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVS 197 (660)
T ss_pred HHHHHcCCeEEEecCCCCHHHHHHHHHcCCC--CEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcE
Confidence 9999999999999999999999999999999 99998876655443211 1234444321100 0 00011
Q ss_pred cccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhh
Q 037622 180 FSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFH 259 (560)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 259 (560)
..++.++..........+...++|+++|+|||||||.||||++||.+++..+.............+..+|++++++|++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H 277 (660)
T PLN02861 198 CFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAH 277 (660)
T ss_pred EEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHH
Confidence 23455544332211222344689999999999999999999999999998776654421000012467899999999999
Q ss_pred HHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhh------------------------
Q 037622 260 IYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAK------------------------ 315 (560)
Q Consensus 260 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~------------------------ 315 (560)
+++... .+.++..|+++++.. +++..+++.+++++||+++++|++++.+.+...
T Consensus 278 ~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~ 355 (660)
T PLN02861 278 VYDQVI-ETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGN 355 (660)
T ss_pred HHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 999864 455899999998874 689999999999999999999999998864100
Q ss_pred ------------ccCC-------CCC-CccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCC
Q 037622 316 ------------GLCG-------NSL-KSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFS 375 (560)
Q Consensus 316 ------------~~~~-------~~l-~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~ 375 (560)
.... ..+ .++|.+++||+++++++.+ +.+.++...+++.||+||+++.++..... ...
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-~~~ 433 (660)
T PLN02861 356 LRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGGCFTSIAN-VFS 433 (660)
T ss_pred HhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhceeecccc-cCC
Confidence 0000 011 4789999999999999854 66666445799999999998765543222 123
Q ss_pred cccccccccCCeEEEEEeC-CCC-ccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEE
Q 037622 376 KYFSVGLLAPNIQAKVVDW-VNG-CFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIV 453 (560)
Q Consensus 376 ~~~~~G~~~p~~~~~v~d~-~~~-~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~ 453 (560)
..+++|+|+|+++++++|. +++ ..++.++.|||+++||+++.||+++|+.|.+.| .+|||+|||+|++|+||+++++
T Consensus 434 ~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~dG~l~i~ 512 (660)
T PLN02861 434 MVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQPNGAMKII 512 (660)
T ss_pred CCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhh-hccCcccCceEEECCCCcEEEE
Confidence 5689999999999999983 333 344566789999999999999999999999999 5899999999999999999999
Q ss_pred ccccceeee-cceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCC----------CCCCH---------
Q 037622 454 DRLKEVIKY-NGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDG----------STLTE--------- 513 (560)
Q Consensus 454 GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~----------~~~~~--------- 513 (560)
||+||+||+ +|++|+|.+||+++.+||.|.+++|++.+. ++.++|+|++... ...+.
T Consensus 513 GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~---~~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 589 (660)
T PLN02861 513 DRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF---ESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKA 589 (660)
T ss_pred eccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC---cceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHH
Confidence 999999998 799999999999999999999999999863 3468889887421 00111
Q ss_pred -HHHHHHHHh-----ccCCCCCcceEEEec-CC-----CCCCCCcchHHHHHHHHhccC
Q 037622 514 -AAVIDYLAQ-----RVAPYKKVRRVVFTK-SI-----PKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 514 -~~l~~~~~~-----~l~~~~~p~~i~~~~-~l-----P~t~~GKi~r~~L~~~~~~~~ 560 (560)
..+.+.+++ .++.+.+++.+.+.+ +| .+|+++|+.|+.+++.|+++|
T Consensus 590 ~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I 648 (660)
T PLN02861 590 RKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCI 648 (660)
T ss_pred HHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHH
Confidence 123333432 488899999988865 56 799999999999999998764
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=554.67 Aligned_cols=507 Identities=28% Similarity=0.426 Sum_probs=417.1
Q ss_pred CCCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhC
Q 037622 40 SLLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117 (560)
Q Consensus 40 ~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G 117 (560)
...++.+.+.++++ ++++|+.+. ++.+||.||++++.++|.+|.+ .|+++|++|+++++|+++++++++||+++|
T Consensus 31 ~~~~l~~~l~~~a~~~p~~~al~~~--~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G 107 (567)
T PRK06178 31 GERPLTEYLRAWARERPQRPAIIFY--GHVITYAELDELSDRFAALLRQ-RGVGAGDRVAVFLPNCPQFHIVFFGILKLG 107 (567)
T ss_pred CcccHHHHHHHHHHHCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCcHHHHHHHHHHHhC
Confidence 34789988887664 668999887 7899999999999999999999 799999999999999999999999999999
Q ss_pred CeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC----CCEEEecCCCc-cc---------c-----cCC
Q 037622 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT----TPVVAVPENLV-ND---------F-----KEG 178 (560)
Q Consensus 118 ~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~----~~vi~~~~~~~-~~---------~-----~~~ 178 (560)
++++|++|..+.+++.++++.+++ +++++++...+.+..... ..++....... .. . ...
T Consensus 108 ~~~v~l~p~~~~~~~~~~l~~~~~--~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (567)
T PRK06178 108 AVHVPVSPLFREHELSYELNDAGA--EVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAA 185 (567)
T ss_pred eEEeecCCCCCHHHHHHHHHhcCC--cEEEEccchHHHHHHhhccCCcceEEEecccccccccccccccccccccccccc
Confidence 999999999999999999999999 999998876665543321 12222111000 00 0 000
Q ss_pred CcccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChh
Q 037622 179 RFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMF 258 (560)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 258 (560)
.+..+.+...............++++++++|||||||.||+|++||.++...+...... ...+...++++.++|++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~ 261 (567)
T PRK06178 186 GAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAV----AVVGGEDSVFLSFLPEF 261 (567)
T ss_pred ccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHH----hccCCCCcEEEEecchH
Confidence 11111111111111112233567899999999999999999999999988766554331 24567899999999999
Q ss_pred hHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceee--cccCCCC
Q 037622 259 HIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVS--SGAAPAN 336 (560)
Q Consensus 259 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~--~~g~~~~ 336 (560)
|++|+...++.++..|+++++.+++++..+++.++++++|.+.++|..+..+... ....+.++++++.+. ..++.++
T Consensus 262 ~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 340 (567)
T PRK06178 262 WIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDH-PRFAEYDLSSLRQVRVVSFVKKLN 340 (567)
T ss_pred HHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhC-CCCCCCCcchheeeeeccccccCC
Confidence 9999877788899999999999999999999999999999999999999998765 333445667787754 4468999
Q ss_pred HHHHHHHHHhCCCCeee-cccchhhcccccccCCCCC-----CCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEE
Q 037622 337 SKIIEDFVGAFPHVDFI-QGYGMTESTAVGTRGFNTK-----KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWL 410 (560)
Q Consensus 337 ~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~-----~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v 410 (560)
+++.+.+.+.+ +..++ +.||+||++..+....... ....++++|.|+||++++++|++++++++.|+.|||++
T Consensus 341 ~~~~~~~~~~~-g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v 419 (567)
T PRK06178 341 PDYRQRWRALT-GSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVV 419 (567)
T ss_pred HHHHHHHHHHh-CCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEE
Confidence 99999999998 45555 5799999886544322111 12345679999999999999988899999999999999
Q ss_pred ecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcc
Q 037622 411 RGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGA 490 (560)
Q Consensus 411 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~ 490 (560)
+|++++.||+++++.+...+ .+|||+|||+++++++|+++++||.+|+|+.+|.+|++.+||+++.++|+|.++++++.
T Consensus 420 ~g~~v~~gY~~~~~~~~~~~-~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~ 498 (567)
T PRK06178 420 RTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGR 498 (567)
T ss_pred ECCcccccccCChhhhhhcc-cCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcC
Confidence 99999999999999998887 57899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 491 MDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 491 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
++...++.+++++++.++...+.++++++++++++.+++|. +++++++|+|++||++|++|++.+.+.
T Consensus 499 ~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~~ 566 (567)
T PRK06178 499 PDPDKGQVPVAFVQLKPGADLTAAALQAWCRENMAVYKVPE-IRIVDALPMTATGKVRKQDLQALAEEL 566 (567)
T ss_pred cCcccCcceEEEEEeCCCCcCCHHHHHHHHHhcCcccCCce-EEEeccCCCCCccceeHHHHHHHHHhh
Confidence 98888888999999887766788999999999999999996 888999999999999999999998763
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=553.06 Aligned_cols=506 Identities=29% Similarity=0.473 Sum_probs=414.3
Q ss_pred CCHHHHHhccC--CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHK--HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~--~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.++++++.+.+ .++++|+++. ++.+||+||++++.++|..|.+ .|+++||+|+++++|+.++++++|||+++|++
T Consensus 24 ~~~~~~~~~~a~~~p~~~a~~~~--~~~~ty~eL~~~~~~la~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 100 (563)
T PRK06710 24 QPLHKYVEQMASRYPEKKALHFL--GKDITFSVFHDKVKRFANYLQK-LGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGI 100 (563)
T ss_pred ccHHHHHHHHHHHCCCceEEEec--CeeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHcCeE
Confidence 57788776655 4668999986 7899999999999999999988 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC----CCEEEecCCCccccc-------------------
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT----TPVVAVPENLVNDFK------------------- 176 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~----~~vi~~~~~~~~~~~------------------- 176 (560)
++|++|.++.+++.++++.+++ +.+++++.....+..... ..++...........
T Consensus 101 ~vpi~p~~~~~~l~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (563)
T PRK06710 101 VVQTNPLYTERELEYQLHDSGA--KVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKV 178 (563)
T ss_pred EeccCcccCHHHHHHHHhccCC--eEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhcccccccccc
Confidence 9999999999999999999999 999888765443322111 111111100000000
Q ss_pred -CCC-cccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEe
Q 037622 177 -EGR-FSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAV 254 (560)
Q Consensus 177 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (560)
... ...+..+..............++++++++|||||||.||+|.++|.++..+........ .......++++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~l~~ 255 (563)
T PRK06710 179 SESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWL---YNCKEGEEVVLGV 255 (563)
T ss_pred cccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhc---cCCCCCCceEEEe
Confidence 000 00011111111111111112357899999999999999999999999876543333211 1122345688999
Q ss_pred cChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCC
Q 037622 255 LPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAP 334 (560)
Q Consensus 255 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~ 334 (560)
.|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++. .......++++|.+++||++
T Consensus 256 ~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~v~~gg~~ 334 (563)
T PRK06710 256 LPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNS-PLLKEYDISSIRACISGSAP 334 (563)
T ss_pred CchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcC-CccccCChhhhhheeeCCCc
Confidence 99999999876777889999999999889999999999999999999999999998865 33334456899999999999
Q ss_pred CCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEeccc
Q 037622 335 ANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPG 414 (560)
Q Consensus 335 ~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~ 414 (560)
+++++.+++.+.+ +.++++.||+||++.++...... ....++++|.|++++.++++|++++.+++.|+.|||+++|+.
T Consensus 335 ~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~ 412 (563)
T PRK06710 335 LPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSNFLW-EKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQ 412 (563)
T ss_pred CCHHHHHHHHHhh-CCCEecccccccCccccccCccc-ccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCc
Confidence 9999999999988 88999999999998765443221 123457899999999999999888999999999999999999
Q ss_pred chhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCC
Q 037622 415 TMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKV 494 (560)
Q Consensus 415 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~ 494 (560)
++.||+++++.+...+ .+|||+|||+++++++|.++++||.||+|+.+|.+|+|.+||+++.++|+|.+++|++.++..
T Consensus 413 ~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~ 491 (563)
T PRK06710 413 IMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPY 491 (563)
T ss_pred cchhhhCChHHHhhhc-ccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCC
Confidence 9999999999998887 589999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 495 LGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 495 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
.|+.++++++..++...+.++++++++++++.++.|..++++++||+|++||++|++|++.+..+
T Consensus 492 ~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~~ 556 (563)
T PRK06710 492 RGETVKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKRK 556 (563)
T ss_pred cCceeEEEEEECCCCCCCHHHHHHHHHHhcccccCCcEEEEcccCCCCccchhhHHHHHHHHhhc
Confidence 88999999998887777889999999999999999999999999999999999999999987654
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=531.00 Aligned_cols=539 Identities=27% Similarity=0.354 Sum_probs=436.3
Q ss_pred hhhhhhccCCCCCCCCCCCCCCceec-cCCCCCCCCCCCCCCCHHHHHhccCC----CCceEEEEC----CCCceecHHH
Q 037622 2 EKFLQTFSSERINTSQWYSPETGIYH-SKHPSVNLPANDSLLDVDSFIFSHKH----NGRTALVDS----LSGYSISYPQ 72 (560)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~a~~~~----~~~~~~Ty~e 72 (560)
+.||++...+...-..|. .. .... ...+...|.. +..+|....+..... .+++|.+.. .+...+||.|
T Consensus 25 ~~fw~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~w~~-g~~ln~~~n~~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~e 101 (626)
T KOG1175|consen 25 ERFWGEVAKELHWKFPWP-RC-NKDENKGNPFTKWFP-GAFLNACYNCLDRHIKEKGGDKVAIIFEGNEGGDTEVWTYKE 101 (626)
T ss_pred HHHHHHhhhhhhcccCcc-cc-ccccccCCCCccccc-cchhhhhHhhhhhhhhhcCCCCcEEEEEecCCCceEEEEHHH
Confidence 456666666654334443 11 2222 2334555554 455666665544432 336666532 1224589999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccc
Q 037622 73 LFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYEN 152 (560)
Q Consensus 73 l~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~ 152 (560)
+.+.+.++|..|.. +|+++||+|++++|+.+++++++|||+++|++.+++...+++.++...+..+++ +++++.+..
T Consensus 102 l~~~v~~~a~~l~~-~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~--k~i~t~d~~ 178 (626)
T KOG1175|consen 102 LLDQVVRLANVLRK-CGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKA--KVIITQDVV 178 (626)
T ss_pred HHHHHHHHHHHHHh-cCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCC--CEEEEEeee
Confidence 99999999999996 899999999999999999999999999999999999999999999999999999 999888765
Q ss_pred hHHhhhcCC------------------CCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCCC
Q 037622 153 VDKLRSWGT------------------TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTT 214 (560)
Q Consensus 153 ~~~~~~~~~------------------~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTT 214 (560)
......... ...+.+.. ......++..+....+...+...+.+|+.+|+||||||
T Consensus 179 ~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~d~~~~~~~~~a~~~~~~~~~~~edpl~IlfTSGtT 251 (626)
T KOG1175|consen 179 ARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSR-------RNRDLFWSLELKKASPEHPCVPVKAEDPLFILFTSGTT 251 (626)
T ss_pred ccCCCccchhhhHHHHhhcccccccccceeeEEec-------ccccccHHHHhhhcCCCCCceecCccCceEEEecCCCC
Confidence 433222111 00000000 11133455555555555557778889999999999999
Q ss_pred CCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeC--CcCHHHHHHHH
Q 037622 215 GASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMR--RFEASEMLKVI 292 (560)
Q Consensus 215 G~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l 292 (560)
|.||++.+++....-........ .+.+.++|++++...+.|+.+..+.++.+|..|+++++.+ ++++..+++.+
T Consensus 252 g~PK~v~ht~~g~ll~~~~~~~~----~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v 327 (626)
T KOG1175|consen 252 GKPKGVIHTTGGYLLGAALTSRY----HFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKIL 327 (626)
T ss_pred CCCCceeeccCcchHHHhhhcce----eccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhH
Confidence 99999999998866554443332 6789999999999999999999988999999999999987 46899999999
Q ss_pred HHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCCCC-eeecccchhhcccccccCCC
Q 037622 293 DKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHV-DFIQGYGMTESTAVGTRGFN 370 (560)
Q Consensus 293 ~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~-~i~~~YG~tE~~~~~~~~~~ 370 (560)
.++++|+++..|+.++.|.+.... ....++++||++.++||++.++.++++.+.+ +. +|++.||.||+|..+..+..
T Consensus 328 ~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~-~~~pv~e~~~qtEtG~~~i~~~~ 406 (626)
T KOG1175|consen 328 DKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVT-GLDPIYETYGQTETGGICITPKP 406 (626)
T ss_pred hhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhc-CccchhhceeeeccCceeeeccC
Confidence 999999999999999988665222 2234447799999999999999999999999 55 69999999999998877655
Q ss_pred CCCCCcccccccccCCeEEEEEeCCCCccCCCC-CcceEEEecc---cchhhhcCCchhhhhccCC--CCceecCceEEE
Q 037622 371 TKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPG-STGELWLRGP---GTMKEYINNADATMSTIDK--EGWLHTGDIAYF 444 (560)
Q Consensus 371 ~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g-~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~~ 444 (560)
.....++++.+.|.+|+.+.|.| ++|+.++.+ +.|+|+++.+ +++++|++|++........ .|+|.|||.+++
T Consensus 407 g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~r 485 (626)
T KOG1175|consen 407 GKLPIKPGSAGKPFPGYDVQILD-ENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRR 485 (626)
T ss_pred CCCCcCccccCCCCCCcceEEEC-CCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEE
Confidence 44357899999999999999999 578888765 8899999983 7899999999944433223 789999999999
Q ss_pred ccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCH---HHHHHHHH
Q 037622 445 DEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTE---AAVIDYLA 521 (560)
Q Consensus 445 ~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~ 521 (560)
|+||++++.||.||+|+++|+|+++.|||+++.+||.|.|++||+.+++..||.+++||++.++....+ ++|+.+++
T Consensus 486 d~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~VR 565 (626)
T KOG1175|consen 486 DEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKHVR 565 (626)
T ss_pred cCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998854433 68888999
Q ss_pred hccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 522 QRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 522 ~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+.+.+++.|+.|.+++.||+|.+||+.||.||+.+..+
T Consensus 566 ~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 566 SVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGK 603 (626)
T ss_pred hhcCcccccceeEecCCCCccccchhHHHHHHHHhccC
Confidence 99999999999999999999999999999999998754
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-66 Score=549.48 Aligned_cols=503 Identities=23% Similarity=0.346 Sum_probs=408.0
Q ss_pred CCHHHHHhccCCC--CceEEEECC--CCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhC
Q 037622 42 LDVDSFIFSHKHN--GRTALVDSL--SGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117 (560)
Q Consensus 42 ~~~~~~~~~~~~~--~~~a~~~~~--~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G 117 (560)
.++.+++.+.+.. ++.++.+.. ..+.+||.||+++++++|++|.+ +|+++||+|+++++|+++++++++||+++|
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~g~~~~d~v~i~~~~~~~~~~~~la~~~~G 88 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAA-LGVEPGDRVGTLAWNGYRHLEAYYGVSGSG 88 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 5677787776653 356665422 23689999999999999999999 899999999999999999999999999999
Q ss_pred CeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC----C-CEEEecCCCcccccCCCcccHHHhhcccCC
Q 037622 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT----T-PVVAVPENLVNDFKEGRFSDFHKLIAGKFD 192 (560)
Q Consensus 118 ~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~----~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (560)
++++|++|.++.+++..+++.+++ ++++++....+.+..... . .++...+.............++++......
T Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (539)
T PRK07008 89 AVCHTINPRLFPEQIAYIVNHAED--RYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVGAQDG 166 (539)
T ss_pred cEEeecccccCHHHHHHHHhccCC--cEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHHhcccCC
Confidence 999999999999999999999999 888888765544332211 1 122222211000011123455555443322
Q ss_pred CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhh
Q 037622 193 LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLS 272 (560)
Q Consensus 193 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~ 272 (560)
........++++++++|||||||.||+|+++|.++......... .......++|+++...|++|.+++. ..+.++.
T Consensus 167 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~---~~~~~~~~~d~~l~~~p~~h~~~~~-~~~~~l~ 242 (539)
T PRK07008 167 DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAAL---PDAMGLSARDAVLPVVPMFHVNAWG-LPYSAPL 242 (539)
T ss_pred CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhc---ccccCCCCCceEEecCchHHhhhHH-HHHHHHh
Confidence 22233456788999999999999999999999998654322211 0135577899999999999988774 4567788
Q ss_pred CCCEEEEeC-CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCe
Q 037622 273 LGPSVVVMR-RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVD 351 (560)
Q Consensus 273 ~G~~~v~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~ 351 (560)
.|+++++.+ .+++..+++.++++++|++.++|+++..+++. ......+++++|.++++|+++++++++.+.+.+ +++
T Consensus 243 ~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~-~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~ 320 (539)
T PRK07008 243 TGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNH-MREAGLRFSTLRRTVIGGSACPPAMIRTFEDEY-GVE 320 (539)
T ss_pred cCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhc-ccccCCCcccceEEEEcCCCCCHHHHHHHHHHh-CCc
Confidence 999999875 57899999999999999999999999999876 334455678999999999999999999999988 899
Q ss_pred eecccchhhcccccccCCCCC---------CCCcccccccccCCeEEEEEeCCCCccCCCC--CcceEEEecccchhhhc
Q 037622 352 FIQGYGMTESTAVGTRGFNTK---------KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPG--STGELWLRGPGTMKEYI 420 (560)
Q Consensus 352 i~~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g--~~Gel~v~~~~~~~gy~ 420 (560)
+++.||+||++..++.+.... ......++|+|+|++.++++| +++++++.+ +.|||+++|++++.||+
T Consensus 321 l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~ 399 (539)
T PRK07008 321 VIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYF 399 (539)
T ss_pred eecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhc
Confidence 999999999987654332110 011246789999999999999 567777653 57999999999999999
Q ss_pred CCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEE
Q 037622 421 NNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPV 500 (560)
Q Consensus 421 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 500 (560)
++++. .+ .+|||+|||++++++||.+++.||.+|+|+.+|++|+|.+||+++.++|.|.++++++.++...++.++
T Consensus 400 ~~~~~---~~-~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~ 475 (539)
T PRK07008 400 RGDAS---PL-VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPL 475 (539)
T ss_pred CChhh---hh-cCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceE
Confidence 99843 33 368999999999999999999999999999999999999999999999999999999999988888899
Q ss_pred EEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 501 AFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 501 ~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
++|+..++...+.+++++++++++++|+.|+.|+++++||+|++||++|++|++.+.+
T Consensus 476 ~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~ 533 (539)
T PRK07008 476 LVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRD 533 (539)
T ss_pred EEEEeCCCCccCHHHHHHHHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHh
Confidence 9998887766788999999999999999999999999999999999999999998864
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-66 Score=549.34 Aligned_cols=505 Identities=28% Similarity=0.457 Sum_probs=414.5
Q ss_pred CCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 41 LLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 41 ~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
..++.+++.++++ ++++|+++. ++.+||.||.++++++|.+|.+ .|+++||+|+++++|+++++++++||+++|+
T Consensus 22 ~~~i~~~l~~~a~~~p~~~a~~~~--~~~lTy~~l~~~~~~~a~~L~~-~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~ 98 (557)
T PRK07059 22 YPSLADLLEESFRQYADRPAFICM--GKAITYGELDELSRALAAWLQS-RGLAKGARVAIMMPNVLQYPVAIAAVLRAGY 98 (557)
T ss_pred CCCHHHHHHHHHHHcCCCceEEEc--CceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHhcCe
Confidence 4689998877664 669999986 7899999999999999999999 7999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC---C-CCEEEecCCCc-c------------------cc
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG---T-TPVVAVPENLV-N------------------DF 175 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~---~-~~vi~~~~~~~-~------------------~~ 175 (560)
+++|++|.++.+++.++++.+++ +++++++.....+.... . ..++....... . ..
T Consensus 99 ~~v~v~~~~~~~~~~~~~~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (557)
T PRK07059 99 VVVNVNPLYTPRELEHQLKDSGA--EAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAW 176 (557)
T ss_pred EEeccCcccCHHHHHHHHHccCc--eEEEEchhhHHHHHHhhcccCCceeEEeccccccccccccccccccccccccccc
Confidence 99999999999999999999999 88988776544333221 1 11211110000 0 00
Q ss_pred cCCCcccHHHhhcccC-CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhccccc--CCCCcEEE
Q 037622 176 KEGRFSDFHKLIAGKF-DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY--LSSEAVFL 252 (560)
Q Consensus 176 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 252 (560)
.......+.+.+.... .........++++++++|||||||.||+|+++|.++..++.....+....... ......++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (557)
T PRK07059 177 SLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFV 256 (557)
T ss_pred CCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEE
Confidence 0112223333333221 12223345678999999999999999999999999987665443321100111 11245788
Q ss_pred EecChhhHHhHHHHHHHHhhCCCEEEEeC-CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecc
Q 037622 253 AVLPMFHIYGLSLFALGLLSLGPSVVVMR-RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSG 331 (560)
Q Consensus 253 ~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~ 331 (560)
+.+|++|.+++....+.++..|++.++.+ ..++..+++.++++++|.+.++|.++..+... ......+++++|.++.|
T Consensus 257 ~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~-~~~~~~~~~~l~~~~~g 335 (557)
T PRK07059 257 CALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNN-PDFDKLDFSKLIVANGG 335 (557)
T ss_pred EeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcC-cCcCcCCchhheEEEec
Confidence 89999999988667778888888877665 46889999999999999999999999999876 33445567899999999
Q ss_pred cCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEe
Q 037622 332 AAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLR 411 (560)
Q Consensus 332 g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~ 411 (560)
|+++++.+.++|.+.+ ++++++.||+||++.+++.+... ....++++|.|++++.++++| +++++++.|+.|||+++
T Consensus 336 g~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~~Gel~v~ 412 (557)
T PRK07059 336 GMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVD-ATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEICIR 412 (557)
T ss_pred cccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCCCC-CCCcCCcccCccCCcEEEEEC-CCCCCCCCCCceEEEEe
Confidence 9999999999999988 89999999999999876655332 223467899999999999999 67899999999999999
Q ss_pred cccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEccc
Q 037622 412 GPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAM 491 (560)
Q Consensus 412 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~ 491 (560)
|+.++.||+++++.+...+..+|||+|||+++++++|.+++.||.+|+|+.+|++|+|.+||+++.++|+|.+++|++.+
T Consensus 413 g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~ 492 (557)
T PRK07059 413 GPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVP 492 (557)
T ss_pred CCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecc
Confidence 99999999999999988887889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 492 DKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 492 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
+...++.++++++.... ..+.++++++++++|+.++.|..+++++++|+|++||++|++|+++
T Consensus 493 ~~~~ge~~~~~v~~~~~-~~~~~~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 493 DEHSGEAVKLFVVKKDP-ALTEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRRELRDG 555 (557)
T ss_pred cCCCCeeEEEEEEeCCC-CCCHHHHHHHHHHhcccccCCcEEEEeccCCCCcccceeHHHHHhh
Confidence 98888888888886543 4667899999999999999999999999999999999999999875
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-66 Score=545.69 Aligned_cols=496 Identities=28% Similarity=0.395 Sum_probs=415.4
Q ss_pred CCHHHHHhccCC--CCceEEEECC---CCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHh
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSL---SGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYL 116 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~---~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~ 116 (560)
.|+++++.+.++ ++++|++... +.+.+||.||+++++++|.+|.+ +|+++||+|+|+++|+.+++++++||+++
T Consensus 7 ~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~-~g~~~~~~v~i~~~n~~~~~~~~la~~~~ 85 (517)
T PRK08008 7 QHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYS-LGIRKGDKVALHLDNCPEFIFCWFGLAKI 85 (517)
T ss_pred ccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 578888877774 5699988642 23789999999999999999998 89999999999999999999999999999
Q ss_pred CCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC------CCEEEecCCCcccccCCCcccHHHhhccc
Q 037622 117 GAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT------TPVVAVPENLVNDFKEGRFSDFHKLIAGK 190 (560)
Q Consensus 117 G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (560)
|++++++++..+.+++.++++.+++ ++++++.+..+.+.+... ..++..+... ........+.+.....
T Consensus 86 G~~~v~l~~~~~~~~l~~~l~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 160 (517)
T PRK08008 86 GAIMVPINARLLREESAWILQNSQA--SLLVTSAQFYPMYRQIQQEDATPLRHICLTRVAL---PADDGVSSFTQLKAQQ 160 (517)
T ss_pred CeEEEEcCcccCHHHHHHHHHhcCc--eEEEEecchhHHHHHHHhhccccCcEEEEecCCC---cccccccCHHHHhccC
Confidence 9999999999999999999999999 999998876655443211 1222222211 1112233444443322
Q ss_pred CCC-CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHH
Q 037622 191 FDL-VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALG 269 (560)
Q Consensus 191 ~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~ 269 (560)
... .......++++++++|||||||.||+|+++|.++......... ...+..++++++.+|++|..+....++.
T Consensus 161 ~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 235 (517)
T PRK08008 161 PATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAW-----QCALRDDDVYLTVMPAFHIDCQCTAAMA 235 (517)
T ss_pred CccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhh-----hcCCCCCCeEEEecCcHHHHHHHHHHHH
Confidence 211 1122345689999999999999999999999999865432221 2346789999999999999888778889
Q ss_pred HhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCC
Q 037622 270 LLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPH 349 (560)
Q Consensus 270 ~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~ 349 (560)
++..|+++++.+++++..+++.++++++|++.++|++++.+... ..........++.+.++ .++++.+...+.+.+ +
T Consensus 236 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~-~ 312 (517)
T PRK08008 236 AFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQ-PPSANDRQHCLREVMFY-LNLSDQEKDAFEERF-G 312 (517)
T ss_pred HHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhC-CCccccccccceeeEEe-cCCCHHHHHHHHHHh-C
Confidence 99999999999999999999999999999999999999998765 22222334567777765 478999999999988 8
Q ss_pred CeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEec---ccchhhhcCCchhh
Q 037622 350 VDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG---PGTMKEYINNADAT 426 (560)
Q Consensus 350 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~---~~~~~gy~~~~~~~ 426 (560)
+++++.||+||++..++..... .....+++|.|+++++++++| +++++++.|+.|||+++| ++++.||+++++.+
T Consensus 313 ~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~ 390 (517)
T PRK08008 313 VRLLTSYGMTETIVGIIGDRPG-DKRRWPSIGRPGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKAT 390 (517)
T ss_pred CeEEeeccccccccccccCCcc-ccccCCccccCCCCcEEEEEC-CCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHH
Confidence 9999999999998765543322 234567899999999999999 678999999999999998 58999999999999
Q ss_pred hhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEec
Q 037622 427 MSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRR 506 (560)
Q Consensus 427 ~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 506 (560)
.+.++.+|||+|||+|+++++|.+++.||.+|+||.+|++|+|.+||+++.++|.|.+++|++.++...++.+.+++++.
T Consensus 391 ~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~ 470 (517)
T PRK08008 391 AKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLN 470 (517)
T ss_pred hhcccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEEC
Confidence 99998899999999999999999999999999999999999999999999999999999999999988888899999998
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHH
Q 037622 507 DGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553 (560)
Q Consensus 507 ~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~ 553 (560)
.+...+.++++++++++++++++|..+++++++|+|++||++|+.|+
T Consensus 471 ~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 471 EGETLSEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred CCCCCCHHHHHHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence 87777888999999999999999999999999999999999999874
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=653.80 Aligned_cols=484 Identities=21% Similarity=0.248 Sum_probs=420.2
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.+++++|.++++ ++++|++++ ++++||+||+++++++|+.|.+ .|+++|++|+|+++|++++++++|||+++|++
T Consensus 3095 ~~~~~l~~~~a~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~ 3171 (3956)
T PRK12467 3095 RLVHQLIEAQVARTPEAPALVFG--DQQLSYAELNRRANRLAHRLIA-IGVGPDVLVGVAVERSVEMIVALLAVLKAGGA 3171 (3956)
T ss_pred ccHHHHHHHHHHhCCCcceEeeC--CcccCHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcE
Confidence 689999987764 569999997 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVI 199 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (560)
++|++|.++.+++.++++.+++ ++++++......+.......++.++... .............
T Consensus 3172 ~vpld~~~p~~rl~~il~~~~~--~~vlt~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 3234 (3956)
T PRK12467 3172 YVPLDPEYPRERLAYMIEDSGV--KLLLTQAHLLEQLPAPAGDTALTLDRLD---------------LNGYSENNPSTRV 3234 (3956)
T ss_pred eecCCCCChHHHHHHHHhCCCC--cEEEechhhhhhcccccCCceeeecchh---------------hcccCCCCCcccC
Confidence 9999999999999999999999 9999987765554333223333333211 0011111122345
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.++++++|+|||||||.||||+++|+++.+.+..... ...++++|+++.+.|++|..+. ..++.+|..|+++++
T Consensus 3235 ~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~-----~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~l~i 3308 (3956)
T PRK12467 3235 MGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAE-----AYELDANDRVLLFMSFSFDGAQ-ERFLWTLICGGCLVV 3308 (3956)
T ss_pred CCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHH-----hcCCCcCCEEEEecCccHhHHH-HHHHHHHhCCCEEEE
Confidence 6899999999999999999999999999998887766 5678999999999999999887 588999999999999
Q ss_pred eCC--cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccc
Q 037622 280 MRR--FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYG 357 (560)
Q Consensus 280 ~~~--~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG 357 (560)
.+. +++..+++.++++++|++.++|++++.+++. .....+++||.+++|||++++++.++|.+.+++++++|.||
T Consensus 3309 ~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~---~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG 3385 (3956)
T PRK12467 3309 RDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAED---AGGADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYG 3385 (3956)
T ss_pred CCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhc---ccccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcc
Confidence 875 7899999999999999999999999999764 12346788999999999999999999999988899999999
Q ss_pred hhhcccccccCCCCCC---CCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCC
Q 037622 358 MTESTAVGTRGFNTKK---FSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEG 434 (560)
Q Consensus 358 ~tE~~~~~~~~~~~~~---~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~ 434 (560)
+||++..++....... .....++|+|++|++++|+| +++++++.|+.|||+|+|+++++||+++|+.|.+.|..++
T Consensus 3386 ~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p 3464 (3956)
T PRK12467 3386 PTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADP 3464 (3956)
T ss_pred cchhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC-CCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCC
Confidence 9999877664332211 12346899999999999999 6789999999999999999999999999999999986544
Q ss_pred -------ceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecC
Q 037622 435 -------WLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD 507 (560)
Q Consensus 435 -------~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 507 (560)
||+|||+|++++||.++++||+||+||++|++|++.|||++|.++|+|.+++|++.. +..++.+++++++..
T Consensus 3465 ~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~-~~~~~~lva~v~~~~ 3543 (3956)
T PRK12467 3465 FSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARD-GAGGKQLVAYVVPAD 3543 (3956)
T ss_pred CCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEec-CCCCcEEEEEEeCCC
Confidence 699999999999999999999999999999999999999999999999999999874 345788999999877
Q ss_pred CCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHH
Q 037622 508 GSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFL 556 (560)
Q Consensus 508 ~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~ 556 (560)
+.....++++++++++||.|++|..++++++||+|++||+||++|++..
T Consensus 3544 ~~~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~ 3592 (3956)
T PRK12467 3544 PQGDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKALPDPD 3592 (3956)
T ss_pred CCcccHHHHHHHHhccCChhhCCCeeeeeccCCCCCCCccchhhcCCCC
Confidence 6667788999999999999999999999999999999999999998643
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-67 Score=569.29 Aligned_cols=487 Identities=22% Similarity=0.281 Sum_probs=395.3
Q ss_pred CCCHHHHHhccCC--CC-ceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhC
Q 037622 41 LLDVDSFIFSHKH--NG-RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117 (560)
Q Consensus 41 ~~~~~~~~~~~~~--~~-~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G 117 (560)
..|+.+++.++++ ++ ++|+.+. ..+++||+||.++++++|++|.+ . +++||+|+++++|++++++++|||+++|
T Consensus 203 ~~t~~~~l~~~~~~~p~~~~a~~~~-~~~~~Ty~el~~~~~~lA~~L~~-~-~~~gd~Val~~~n~~e~~~~~lA~~~~G 279 (718)
T PRK08043 203 RETLYEALLSAQYRYGAGKPCIEDV-NFTPDSYRKLLKKTLFVGRILEK-Y-SVEGERIGLMLPNATISAAVIFGASLRR 279 (718)
T ss_pred CCCHHHHHHHHHHHhCCCCcceEcC-CCCcccHHHHHHHHHHHHHHHHH-h-cCCCceEEEEcCCcHHHHHHHHHHHHcC
Confidence 3677887777653 44 5777653 24789999999999999999988 5 5999999999999999999999999999
Q ss_pred CeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhh--hc----CCCCEEEecCCCcccccCCCcccHHHh----h
Q 037622 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLR--SW----GTTPVVAVPENLVNDFKEGRFSDFHKL----I 187 (560)
Q Consensus 118 ~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~--~~----~~~~vi~~~~~~~~~~~~~~~~~~~~~----~ 187 (560)
++++|+++.++.++++++++.+++ ++++++.+...... .. ....++.+++.. ....+... .
T Consensus 280 ~v~vpl~~~~~~~~l~~~l~~s~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~ 350 (718)
T PRK08043 280 RIPAMMNYTAGVKGLTSAITAAEI--KTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLK-------DDVTTADKLWIFA 350 (718)
T ss_pred CcccccccCcCHHHHHHHHHHcCC--cEEEEcHHHHhhccCCChhhhhccccEEEhhhhh-------hhcchhHHHHHHH
Confidence 999999999999999999999999 99998876543211 00 011222222110 00011100 0
Q ss_pred cccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHH
Q 037622 188 AGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFA 267 (560)
Q Consensus 188 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~ 267 (560)
.............++|+++++|||||||.||+|+++|.++...+..... ...++++|++++.+|++|.+++...+
T Consensus 351 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~-----~~~~~~~d~~l~~~Pl~h~~g~~~~~ 425 (718)
T PRK08043 351 HLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKT-----IADFTPNDRFMSALPLFHSFGLTVGL 425 (718)
T ss_pred HHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH-----hhCCCccCeEEEcCcchhhhhhHHHH
Confidence 0000111112346789999999999999999999999999888776654 45678899999999999999997778
Q ss_pred HHHhhCCCEEEEeCC-cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHh
Q 037622 268 LGLLSLGPSVVVMRR-FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGA 346 (560)
Q Consensus 268 ~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~ 346 (560)
+.++..|+++++.+. ++...+++.++++++|++.++|+++..+.+. ....++++||.+++||+++++++.+.+.+.
T Consensus 426 ~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~---~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~ 502 (718)
T PRK08043 426 FTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARF---ANPYDFARLRYVVAGAEKLQESTKQLWQDK 502 (718)
T ss_pred HHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhh---cCcccccceEEEEEeCccCCHHHHHHHHHH
Confidence 899999999998774 5678889999999999999999999887653 123467899999999999999999999998
Q ss_pred CCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcC--Cch
Q 037622 347 FPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYIN--NAD 424 (560)
Q Consensus 347 ~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~--~~~ 424 (560)
+ ++++++.||+||++.+++.... ...+.+++|+|+||++++++|.+ + .++.|||+++|++++.||++ +++
T Consensus 503 ~-g~~l~~~YG~TE~~~~~~~~~~--~~~~~~svG~p~pg~~~~i~d~~-~----~~~~Gel~v~g~~v~~GY~~~e~~~ 574 (718)
T PRK08043 503 F-GLRILEGYGVTECAPVVSINVP--MAAKPGTVGRILPGMDARLLSVP-G----IEQGGRLQLKGPNIMNGYLRVEKPG 574 (718)
T ss_pred c-CCCeecccCcccccceEEecCC--cccCCCCCCCcCCCCeeEEecCC-C----CCCceEEEEecCCccccccCCCCcc
Confidence 8 8999999999999877654322 22357899999999999999843 2 25669999999999999998 444
Q ss_pred h-------hhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCc
Q 037622 425 A-------TMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGE 497 (560)
Q Consensus 425 ~-------~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~ 497 (560)
. +...+..+|||+|||+|++|+||++++.||.+|+||++|++|+|.|||+++.+++.+.+++|++.+++..++
T Consensus 575 ~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge 654 (718)
T PRK08043 575 VLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGE 654 (718)
T ss_pred cccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCc
Confidence 2 222233579999999999999999999999999999999999999999999999988899999998888888
Q ss_pred eEEEEEEecCCCCCCHHHHHHHHHhc-cCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 498 IPVAFVVRRDGSTLTEAAVIDYLAQR-VAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 498 ~~~~~v~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
.+++++. +...+.++++++++++ |+.|++|+.++++++||+|++||++|++|++.+.+
T Consensus 655 ~~v~~~~---~~~~~~~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 713 (718)
T PRK08043 655 ALVLFTT---DSELTREKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDE 713 (718)
T ss_pred eEEEEEc---CcccCHHHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhc
Confidence 8887764 3346778999999987 99999999999999999999999999999998754
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-66 Score=548.45 Aligned_cols=505 Identities=27% Similarity=0.453 Sum_probs=410.2
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.++.++|.++++ ++++|+++. ++.+||.||.++++++|.+|.+..|+++||+|+++++|+++++++++||+++|++
T Consensus 24 ~~~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v 101 (562)
T PRK12492 24 KSVVEVFERSCKKFADRPAFSNL--GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLI 101 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEecC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence 578888876654 568998876 6899999999999999999987349999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC---CC-EEEec--CC--C---------cc-------cc
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT---TP-VVAVP--EN--L---------VN-------DF 175 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~---~~-vi~~~--~~--~---------~~-------~~ 175 (560)
++++++.++.+++.++++.+++ +++++++.....+..... .. ++... +. . .. ..
T Consensus 102 ~v~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (562)
T PRK12492 102 VVNTNPLYTAREMRHQFKDSGA--RALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAY 179 (562)
T ss_pred EeccCccCCHHHHHHHHhccCc--eEEEeccccchHHHHhhhccCceEEEeechhhccccccchhccccccccccccccc
Confidence 9999999999999999999999 888887644332221110 00 00000 00 0 00 00
Q ss_pred cCCCcccHHHhhcccC-CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhccc----ccCCC-Cc
Q 037622 176 KEGRFSDFHKLIAGKF-DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQY----EYLSS-EA 249 (560)
Q Consensus 176 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~----~~~~~-~~ 249 (560)
.......+++...... ..........+++++|+|||||||.||+|+++|+++...+........... ..+.. .+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (562)
T PRK12492 180 HLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQE 259 (562)
T ss_pred CCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCe
Confidence 0011123333332211 111122346689999999999999999999999999877665554221000 00222 35
Q ss_pred EEEEecChhhHHhHHHHHHHHhhCCCEEEEeC-CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCcccee
Q 037622 250 VFLAVLPMFHIYGLSLFALGLLSLGPSVVVMR-RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQV 328 (560)
Q Consensus 250 ~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~ 328 (560)
+++..+|++|.+++...++..+..|+..++.. +.++..+++.++++++|++.++|+++..+.+. ......+++++|.+
T Consensus 260 ~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~-~~~~~~~~~~lr~~ 338 (562)
T PRK12492 260 VMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDH-PGFKDLDFSALKLT 338 (562)
T ss_pred EEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhC-cCcccccccceeEE
Confidence 78899999999998767777788888777654 56899999999999999999999999999876 34445567899999
Q ss_pred ecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceE
Q 037622 329 SSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGEL 408 (560)
Q Consensus 329 ~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel 408 (560)
++||+++++.+.+.|.+.+ ++++++.||+||++.+++..... .....+++|+|+|++.++|+| +++++++.|+.|||
T Consensus 339 ~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~~Gel 415 (562)
T PRK12492 339 NSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPYG-ELARLGTVGIPVPGTALKVID-DDGNELPLGERGEL 415 (562)
T ss_pred EeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCCc-ccccCCccceecCCCEEEEEC-CCCCCCCCCCceEE
Confidence 9999999999999999887 89999999999998876654322 233467899999999999999 57899999999999
Q ss_pred EEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEE
Q 037622 409 WLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVT 488 (560)
Q Consensus 409 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~ 488 (560)
+++|+.++.||+++++.+...|+.++||+|||+|+++++|.+++.||.+|+|+.+|++|++.+||+.|.++|.|.+++|+
T Consensus 416 ~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~ 495 (562)
T PRK12492 416 CIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAI 495 (562)
T ss_pred EEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEE
Confidence 99999999999999999999887789999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 489 GAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 489 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
+.++...++.+++++++..+ ..+.++++++++++|+.+++|.+++++++||+|++||++|++|++.
T Consensus 496 ~~~~~~~~~~~~~~v~~~~~-~~~~~~i~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 496 GVPDERSGEAVKLFVVARDP-GLSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDI 561 (562)
T ss_pred eccCCCCCceEEEEEEeCCC-CCCHHHHHHHHHHhcccccCCcEEEEeccCCCCCCCceeHHHHHhh
Confidence 99988888888888887654 4567899999999999999999999999999999999999999975
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-66 Score=544.80 Aligned_cols=494 Identities=28% Similarity=0.367 Sum_probs=417.2
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.+++.++.+ ++++|+++. ++.+||.||.++++++|..|.+ .|+++|++|+++++|+++++++++||+++|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~ 88 (524)
T PRK06188 12 ATYGHLLVSALKRYPDRPALVLG--DTRLTYGQLADRISRYIQAFEA-LGLGTGDAVALLSLNRPEVLMAIGAAQLAGLR 88 (524)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHhCCE
Confidence 688888877765 458999987 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeecc-chHHhhhcCC-----CCEEEecCCCcccccCCCcccHHHhhcccCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYE-NVDKLRSWGT-----TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDL 193 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~-~~~~~~~~~~-----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (560)
++|++|..+.+++.++++.+++ +.+++++. .......... ..++.+.... ......+........
T Consensus 89 ~v~l~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 159 (524)
T PRK06188 89 RTALHPLGSLDDHAYVLEDAGI--STLIVDPAPFVERALALLARVPSLKHVLTLGPVP-------DGVDLLAAAAKFGPA 159 (524)
T ss_pred EEecccCCCHHHHHHHHHhcCc--eEEEEecchhhHHHHHHhhhcCCceEEEEeCCcc-------chhhHHHhhhccCcc
Confidence 9999999999999999999999 88888765 3222222111 1122222110 001111111111111
Q ss_pred CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhC
Q 037622 194 VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSL 273 (560)
Q Consensus 194 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~ 273 (560)
.......++++++++|||||||.||+|.++|.++......... ...+..++++++..|++|.+++ .++.++..
T Consensus 160 ~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~-----~~~~~~~~~~l~~~pl~~~~g~--~~~~~l~~ 232 (524)
T PRK06188 160 PLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLA-----EWEWPADPRFLMCTPLSHAGGA--FFLPTLLR 232 (524)
T ss_pred cccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHh-----hcCCCcCcEEEEecCchhhhhH--HHHHHHHc
Confidence 1112224567999999999999999999999999988776665 4667889999999999999887 45778999
Q ss_pred CCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeee
Q 037622 274 GPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFI 353 (560)
Q Consensus 274 G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~ 353 (560)
|+++++.+.+++..+++.++++++|++.++|+++..+++. .......++++|.+++||+++++++.+.+.+.+ +..++
T Consensus 233 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~-~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~ 310 (524)
T PRK06188 233 GGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDH-PDLRTRDLSSLETVYYGASPMSPVRLAEAIERF-GPIFA 310 (524)
T ss_pred CCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhC-cCccCCCCcceeEEEEcCCCCCHHHHHHHHHHh-Cchhh
Confidence 9999999999999999999999999999999999999876 344455788999999999999999999998888 77899
Q ss_pred cccchhhcccccccCCCCC----CCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhc
Q 037622 354 QGYGMTESTAVGTRGFNTK----KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMST 429 (560)
Q Consensus 354 ~~YG~tE~~~~~~~~~~~~----~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~ 429 (560)
+.||+||++..++...... ......++|+|+|++.++++| +++++++.|+.|||+++|+.++.||+++++.+...
T Consensus 311 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~ 389 (524)
T PRK06188 311 QYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEA 389 (524)
T ss_pred heeCccccCCceeecCchhccccccccCCccccccCCcEEEEEc-CCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhh
Confidence 9999999976655432211 123467899999999999999 56899999999999999999999999999999888
Q ss_pred cCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCC
Q 037622 430 IDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS 509 (560)
Q Consensus 430 ~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 509 (560)
+ .+|||+|||+++++++|.+++.||.+|+|+.+|++|+|.+||++|.++++|.+++|++.++...++.+++++++.++.
T Consensus 390 ~-~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 468 (524)
T PRK06188 390 F-RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGA 468 (524)
T ss_pred h-cCCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCC
Confidence 8 589999999999999999999999999999999999999999999999999999999999888888999999988776
Q ss_pred CCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 510 TLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 510 ~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
....+++++++++.++.++.|..++++++||+|++||++|++|++.+.+
T Consensus 469 ~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~ 517 (524)
T PRK06188 469 AVDAAELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWE 517 (524)
T ss_pred CCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCccccccHHHHHHHHHh
Confidence 7778899999999999999999999999999999999999999999743
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-66 Score=549.64 Aligned_cols=507 Identities=22% Similarity=0.331 Sum_probs=413.9
Q ss_pred CCHHHHHhccCC--CCceEEEEC-CCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 42 LDVDSFIFSHKH--NGRTALVDS-LSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~-~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
.|+.+++.+.+. ++++|++.. ..++.+||+||.++++++|.+|.+..|+++||+|+++++|+++++++++||+++|+
T Consensus 10 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~ 89 (576)
T PRK05620 10 LSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGA 89 (576)
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCC
Confidence 688888877764 558888753 23579999999999999999998636999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC----C-CCEEEecCCCcccc-----cCCCcccHHHhhc
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG----T-TPVVAVPENLVNDF-----KEGRFSDFHKLIA 188 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~----~-~~vi~~~~~~~~~~-----~~~~~~~~~~~~~ 188 (560)
++++++|.++.+++.++++.+++ ++++++......+.+.. . ..++.++....+.. ......++.++.+
T Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 167 (576)
T PRK05620 90 VFNPLNKQLMNDQIVHIINHAED--EVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD 167 (576)
T ss_pred EEeecccccCHHHHHHHHhccCC--cEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhh
Confidence 99999999999999999999999 99999876655443221 1 22333332211100 0112345666665
Q ss_pred ccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHH
Q 037622 189 GKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFAL 268 (560)
Q Consensus 189 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 268 (560)
............++++++++|||||||.||+|+++|.++........... ...+..++++++.+|++|.+++. ..+
T Consensus 168 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~-~~~ 243 (576)
T PRK05620 168 GRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTD---SLAVTHGESFLCCVPIYHVLSWG-VPL 243 (576)
T ss_pred cCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhh---hcCCCCCCeEEEeCChHHhhhhH-HHH
Confidence 44333333445678999999999999999999999999865443322111 35578899999999999999985 667
Q ss_pred HHhhCCCEEEEeC-CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhC
Q 037622 269 GLLSLGPSVVVMR-RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAF 347 (560)
Q Consensus 269 ~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~ 347 (560)
.++..|+++++.+ .+++..+++.++++++|.++++|+++..++... ........++|.+++||+++++.+.+.|.+.+
T Consensus 244 ~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~ 322 (576)
T PRK05620 244 AAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHY-LKNPPERMSLQEIYVGGSAVPPILIKAWEERY 322 (576)
T ss_pred HHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHh-hccCcccCceeEEEEcCCCCCHHHHHHHHHHh
Confidence 8899999998876 578999999999999999999999999887652 22223345799999999999999999999988
Q ss_pred CCCeeecccchhhcccccccCCCCCC------CCcccccccccCCeEEEEEeCCCCccCC--CCCcceEEEecccchhhh
Q 037622 348 PHVDFIQGYGMTESTAVGTRGFNTKK------FSKYFSVGLLAPNIQAKVVDWVNGCFLP--PGSTGELWLRGPGTMKEY 419 (560)
Q Consensus 348 ~~~~i~~~YG~tE~~~~~~~~~~~~~------~~~~~~~G~~~p~~~~~v~d~~~~~~~~--~g~~Gel~v~~~~~~~gy 419 (560)
++++++.||+||++..++....... .....+.|++.++++++++|+ +..++ .++.|||+++|++++.||
T Consensus 323 -~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~--g~~~~~~~~~~Gel~v~g~~~~~gY 399 (576)
T PRK05620 323 -GVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND--GQVMESTDRNEGEIQVRGNWVTASY 399 (576)
T ss_pred -CCceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC--CccccCCCCCceEEEEEcCcccccc
Confidence 8899999999999876554322110 012347899999999999984 55553 578899999999999999
Q ss_pred cCCchhh----------------hhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcc
Q 037622 420 INNADAT----------------MSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEIL 483 (560)
Q Consensus 420 ~~~~~~~----------------~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~ 483 (560)
+++++.+ ...+..+|||+|||++++++||.+++.||.+|+|+.+|.+|++.+||++|.++|.|.
T Consensus 400 ~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~ 479 (576)
T PRK05620 400 YHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVV 479 (576)
T ss_pred cCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCce
Confidence 9999887 233456789999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcccCCCCCceEEEEEEecCCCC---CCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 484 DVAVTGAMDKVLGEIPVAFVVRRDGST---LTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 484 ~~~v~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
+++|++.++...|+.++++++..++.. ...++++++++++|+++++|+.++++++||+|.+||++|++|++++.+
T Consensus 480 ~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~r~~L~~~~~~ 557 (576)
T PRK05620 480 ECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQHLAD 557 (576)
T ss_pred EEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCcHHHHHHHHhc
Confidence 999999999988899999998876643 356899999999999999999999999999999999999999999874
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=544.12 Aligned_cols=503 Identities=24% Similarity=0.331 Sum_probs=412.3
Q ss_pred CCCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhC
Q 037622 40 SLLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117 (560)
Q Consensus 40 ~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G 117 (560)
...++.+++...++ ++++|+++. ++++||+||++++.++|..|.+ .|+++||+|+++++|+++++++++||+++|
T Consensus 8 ~~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~~L~~~~~~~a~~L~~-~g~~~g~~V~i~~~n~~~~~~~~la~~~~G 84 (540)
T PRK06164 8 RADTLASLLDAHARARPDAVALIDE--DRPLSRAELRALVDRLAAWLAA-QGVRRGDRVAVWLPNCIEWVVLFLACARLG 84 (540)
T ss_pred CCCCHHHHHHHHHHhCCCCeEEecC--CCcccHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCcHHHHHHHHHHHHhC
Confidence 34688888887764 558999865 7899999999999999999998 899999999999999999999999999999
Q ss_pred CeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccch-----HHhhhcC-----C-CCEEEecCCCcccccCCCcccHHHh
Q 037622 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENV-----DKLRSWG-----T-TPVVAVPENLVNDFKEGRFSDFHKL 186 (560)
Q Consensus 118 ~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~-----~~~~~~~-----~-~~vi~~~~~~~~~~~~~~~~~~~~~ 186 (560)
++++|+++..+.+++.++++.+++ ++++++.... ..+.... . ..++.++... ..........+...
T Consensus 85 ~~~v~l~~~~~~~~l~~~i~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 161 (540)
T PRK06164 85 ATVIAVNTRYRSHEVAHILGRGRA--RWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAA-DATPAPAPGARVQL 161 (540)
T ss_pred cEEEecCCCCCcHHHHHHHHhcCc--cEEEEccccccccHHHHhhcccccccCCcceEEEeccCc-ccCCCCCccccccc
Confidence 999999999999999999999999 8888876532 1111111 0 1233333111 00000000001111
Q ss_pred hcccCC----CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHh
Q 037622 187 IAGKFD----LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYG 262 (560)
Q Consensus 187 ~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 262 (560)
...... ........+++++++++||||||.||+|+++|.++...+..... ...+..++++++++|++|.+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-----~~~~~~~~~~l~~~p~~~~~g 236 (540)
T PRK06164 162 FALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIAR-----AYGYDPGAVLLAALPFCGVFG 236 (540)
T ss_pred ccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHH-----hcCCCCCCEEEEcCCchhHHH
Confidence 111000 00112234688999999999999999999999999988877665 456788999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeeccc-CCCCHHHHH
Q 037622 263 LSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGA-APANSKIIE 341 (560)
Q Consensus 263 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g-~~~~~~~~~ 341 (560)
+. .++.++..|+++++.+.+++..+++.++++++|+++++|+++..+.+. ......+++++.+.++| .+.+.++.+
T Consensus 237 ~~-~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~ 313 (540)
T PRK06164 237 FS-TLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDT--AGERADFPSARLFGFASFAPALGELAA 313 (540)
T ss_pred HH-HHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHh--hcccCCCcceeeeeeccCCcchHHHHH
Confidence 95 788999999999999989999999999999999999999999999875 23445678888876665 556667777
Q ss_pred HHHHhCCCCeeecccchhhcccccccCCCCCC-CCccccccccc-CCeEEEEEeCCCCccCCCCCcceEEEecccchhhh
Q 037622 342 DFVGAFPHVDFIQGYGMTESTAVGTRGFNTKK-FSKYFSVGLLA-PNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEY 419 (560)
Q Consensus 342 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~-~~~~~~~G~~~-p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy 419 (560)
++.+. ++++++.||+||++.+++....... .....+.|.++ +++.++++|++++++++.|+.|||+|+|++++.||
T Consensus 314 ~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY 391 (540)
T PRK06164 314 LARAR--GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGY 391 (540)
T ss_pred HHhhc--CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccc
Confidence 77665 7899999999999877655432221 22334567776 89999999988899999999999999999999999
Q ss_pred cCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceE
Q 037622 420 INNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIP 499 (560)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~ 499 (560)
+++++.+...|+.++||+|||+|+++++|.+++.||.+|+||.+|++|+|.+||+.+.++|+|.+++|++.+. ..++.+
T Consensus 392 ~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~-~~~~~~ 470 (540)
T PRK06164 392 LDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR-DGKTVP 470 (540)
T ss_pred cCCchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC-CCceeE
Confidence 9999999999988999999999999999999999999999999999999999999999999999999999874 345678
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCC---cchHHHHHHHHhcc
Q 037622 500 VAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAG---KVLRRELRKFLTSK 559 (560)
Q Consensus 500 ~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~G---Ki~r~~L~~~~~~~ 559 (560)
++++++.++...+.+++.++|+++|+++++|..+++++++|+|++| |++|++|++++.+.
T Consensus 471 ~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~ 533 (540)
T PRK06164 471 VAFVIPTDGASPDEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQAR 533 (540)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHh
Confidence 8999887776678899999999999999999999999999999999 99999999987653
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-67 Score=608.50 Aligned_cols=498 Identities=19% Similarity=0.229 Sum_probs=402.6
Q ss_pred CCHHHHHhccCC--CCceEEEEC-------CCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHH
Q 037622 42 LDVDSFIFSHKH--NGRTALVDS-------LSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLA 112 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~-------~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA 112 (560)
.+++++|.++++ ++++|+++. ..++++||+||.++++++|++|.+ .|+++|++|+|+++|++++++++||
T Consensus 236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~gv~~g~~V~i~~~~~~~~i~~~lA 314 (1389)
T TIGR03443 236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLK-TGIKRGDVVMIYAYRGVDLVVAVMG 314 (1389)
T ss_pred CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEecCCHHHHHHHHH
Confidence 578888888775 569999852 135799999999999999999999 7999999999999999999999999
Q ss_pred HHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccch---HHhhhc--------CCCCEEEecCCCcccccCCCc-
Q 037622 113 LLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENV---DKLRSW--------GTTPVVAVPENLVNDFKEGRF- 180 (560)
Q Consensus 113 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~---~~~~~~--------~~~~vi~~~~~~~~~~~~~~~- 180 (560)
|+++|++++|++|.++.+++.++++.+++ ++++++.... ..+... ...+.+.+.... .......
T Consensus 315 ~l~~G~~~vpldp~~p~~~~~~~l~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 390 (1389)
T TIGR03443 315 VLKAGATFSVIDPAYPPARQTIYLSVAKP--RALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDG--SLVGGSLE 390 (1389)
T ss_pred HHhhCcEEeccCCCCcHHHHHHHHHhcCC--CEEEEeccccccchhhhhhhhcccccccccceEEecccc--cccccccc
Confidence 99999999999999999999999999999 7777655321 111100 001111111100 0000000
Q ss_pred ccHHHhhccc---CCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecCh
Q 037622 181 SDFHKLIAGK---FDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPM 257 (560)
Q Consensus 181 ~~~~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 257 (560)
....+..... ..........++++++|+|||||||.||||+++|+++.+.+.+... .+.+.++|+++...|+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~d~~~~~~~~ 465 (1389)
T TIGR03443 391 GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAK-----RFGLSENDKFTMLSGI 465 (1389)
T ss_pred cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHH-----hcCCCCCCEEEEecCc
Confidence 0000000000 0011112346789999999999999999999999999988877665 4668889999999999
Q ss_pred hhHHhHHHHHHHHhhCCCEEEEeCC---cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCC
Q 037622 258 FHIYGLSLFALGLLSLGPSVVVMRR---FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAP 334 (560)
Q Consensus 258 ~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~ 334 (560)
+|..++ ..++.++..|+++++.+. .++..+++.++++++|++.++|++++.|... ....++++|.+++|||+
T Consensus 466 ~~d~~~-~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~----~~~~~~~lr~~~~gGe~ 540 (1389)
T TIGR03443 466 AHDPIQ-RDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQ----ATTPIPSLHHAFFVGDI 540 (1389)
T ss_pred eecchH-HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhc----ccccCCCccEEEEeccc
Confidence 998887 488999999999999764 3688999999999999999999999998753 12457899999999999
Q ss_pred CCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCC---------CCcccccccccCCeEEEEEeCCC-CccCCCCC
Q 037622 335 ANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKK---------FSKYFSVGLLAPNIQAKVVDWVN-GCFLPPGS 404 (560)
Q Consensus 335 ~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~p~~~~~v~d~~~-~~~~~~g~ 404 (560)
+++.+.+++.+.+++++++|.||+||++.+++....... .....++|+|++++++.|+|+++ +++++.|+
T Consensus 541 l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~ 620 (1389)
T TIGR03443 541 LTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGE 620 (1389)
T ss_pred CCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCC
Confidence 999999999998889999999999999876654321110 11245789999999999999643 57899999
Q ss_pred cceEEEecccchhhhcCCchhhhhccC----------------------------CCCceecCceEEEccCCcEEEEccc
Q 037622 405 TGELWLRGPGTMKEYINNADATMSTID----------------------------KEGWLHTGDIAYFDEDGYLYIVDRL 456 (560)
Q Consensus 405 ~Gel~v~~~~~~~gy~~~~~~~~~~~~----------------------------~~~~~~TGD~~~~~~~g~l~~~GR~ 456 (560)
.|||+|+||+++.||+++|+.|.+.|. .++||+|||+|++++||.++|+||.
T Consensus 621 ~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~ 700 (1389)
T TIGR03443 621 VGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRA 700 (1389)
T ss_pred ceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEeccc
Confidence 999999999999999999999988873 2579999999999999999999999
Q ss_pred cceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCC-C-------------------------
Q 037622 457 KEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS-T------------------------- 510 (560)
Q Consensus 457 ~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~------------------------- 510 (560)
||+||++|++|+|.|||.+|.++|.|.+++|++.++...++.+++++++..+. .
T Consensus 701 dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1389)
T TIGR03443 701 DDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYR 780 (1389)
T ss_pred CCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhh
Confidence 99999999999999999999999999999999888887778899999876221 1
Q ss_pred CCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHH
Q 037622 511 LTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554 (560)
Q Consensus 511 ~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~ 554 (560)
...++++++++++||.|++|..++++++||+|++|||||++|++
T Consensus 781 ~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~ 824 (1389)
T TIGR03443 781 KLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPF 824 (1389)
T ss_pred hhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCC
Confidence 01467899999999999999999999999999999999999964
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=548.32 Aligned_cols=480 Identities=20% Similarity=0.232 Sum_probs=373.9
Q ss_pred HHHHHhccCC--CCceEEEECCCC--ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 44 VDSFIFSHKH--NGRTALVDSLSG--YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 44 ~~~~~~~~~~--~~~~a~~~~~~~--~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
+.+.+.++++ ++++|+++...+ +++||+||.++++++|++|.+ + ++||+|+|+++|++++++++|||+++|++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~-~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~ 80 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLD-R--DRPGAVGLVGEPTVELVAAIQGAWLAGAA 80 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHh-c--CCCCeEEEEcCCCHHHHHHHHHHHHcCCC
Confidence 5555666654 458999986433 789999999999999999988 5 79999999999999999999999999998
Q ss_pred EeccCCC--------CCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccC
Q 037622 120 VIPMNPL--------LSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKF 191 (560)
Q Consensus 120 ~v~l~~~--------~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (560)
+++ ++. ...+++.+++..+++ ++++++......+..... . +.+.+. ........
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~--~~vi~~~~~~~~~~~~~~-~-~~~~~~-------------~~~~~~~~ 142 (525)
T PRK05851 81 VSI-LPGPVRGADDGRWADATLTRFAGIGV--RTVLSHGSHLERLRAVDS-S-VTVHDL-------------ATAAHTNR 142 (525)
T ss_pred CcC-CCCCCCccchhhHHHHHHHHHHhcCC--CEEEeCHHHHHHHHHhhc-c-cccccc-------------cccccccc
Confidence 654 332 123455667888999 888888765544432211 0 111100 00000000
Q ss_pred CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCC-CCcEEEEecChhhHHhHHHHHHHH
Q 037622 192 DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLS-SEAVFLAVLPMFHIYGLSLFALGL 270 (560)
Q Consensus 192 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~g~~~~~~~~ 270 (560)
. .......++++++|+|||||||.||+|+++|.++...+..... ...+. ++|++++++|++|.+++. .++.+
T Consensus 143 ~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~-----~~~~~~~~d~~l~~~pl~h~~g~~-~~~~~ 215 (525)
T PRK05851 143 S-ASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNA-----RVGLDAATDVGCSWLPLYHDMGLA-FLLTA 215 (525)
T ss_pred c-ccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHH-----HhCCCCCCCeEEEcCCCccCccHH-HHHHH
Confidence 0 0111246789999999999999999999999999988877665 45566 899999999999999995 67889
Q ss_pred hhCCCEEEEeCC--c--CHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHh
Q 037622 271 LSLGPSVVVMRR--F--EASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGA 346 (560)
Q Consensus 271 l~~G~~~v~~~~--~--~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~ 346 (560)
+..|+++++.+. + ++..+++.++++++|++...|.++..+.+.........++++|.+++||+++++++.++|.+.
T Consensus 216 l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~ 295 (525)
T PRK05851 216 ALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATA 295 (525)
T ss_pred HHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHH
Confidence 999999999763 3 577899999999999875544444444332122234457899999999999999999998874
Q ss_pred ---C--CCCeeecccchhhcccccccCCCCC-------------CCCcccccccccCCeEEEEEeCCCCccCCCCCcceE
Q 037622 347 ---F--PHVDFIQGYGMTESTAVGTRGFNTK-------------KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGEL 408 (560)
Q Consensus 347 ---~--~~~~i~~~YG~tE~~~~~~~~~~~~-------------~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel 408 (560)
+ +...+++.||+||++..++...... .....+++|+|+||++++|+|++++.+++.|+.|||
T Consensus 296 ~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl 375 (525)
T PRK05851 296 MAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEI 375 (525)
T ss_pred HhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEE
Confidence 3 2245999999999987655322110 112356899999999999999665667899999999
Q ss_pred EEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEE
Q 037622 409 WLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVT 488 (560)
Q Consensus 409 ~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~ 488 (560)
+++|++++.||+++++.+ .++||+|||+|+++ +|.++++||.||+||++|++|+|.|||++|.+||.|.+++|+
T Consensus 376 ~v~g~~~~~GY~~~~~~~-----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv 449 (525)
T PRK05851 376 EIRGASMMSGYLGQAPID-----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVV 449 (525)
T ss_pred EEecCchhhccccCCccC-----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEE
Confidence 999999999999998643 47899999999996 799999999999999999999999999999999999999999
Q ss_pred cccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCC--CCcceEEEec--CCCCCCCCcchHHHHHHHHhc
Q 037622 489 GAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPY--KKVRRVVFTK--SIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 489 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~--~~p~~i~~~~--~lP~t~~GKi~r~~L~~~~~~ 558 (560)
+.+++..++.+.++++.... ..+.+++.++++++|+.+ ++|+.+++++ +||+|++||++|++|++.+.+
T Consensus 450 ~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~l~~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~~~ 522 (525)
T PRK05851 450 AVGTGEGSARPGLVIAAEFR-GPDEAGARSEVVQRVASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSLEA 522 (525)
T ss_pred EEEecCCCCceeEEEEEEec-CcchHHHHHHHHHHHHHHhCCCccEEEEECCCCcCcCcchHHHHHHHHHHHHh
Confidence 99988877777766654421 234567777888888776 8999999998 899999999999999998864
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-66 Score=555.61 Aligned_cols=488 Identities=22% Similarity=0.318 Sum_probs=385.9
Q ss_pred CCHHHHHhccC--CCCceEEEECC-------CCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHH
Q 037622 42 LDVDSFIFSHK--HNGRTALVDSL-------SGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLA 112 (560)
Q Consensus 42 ~~~~~~~~~~~--~~~~~a~~~~~-------~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA 112 (560)
.|+.+++.+++ .++++|+++.. ..+.+||+||.++++++|++|.+ . +++||+|+|+++|+++++++++|
T Consensus 34 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~-~~~gd~V~l~~~n~~e~~~~~lA 111 (612)
T PRK12476 34 TTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQ-V-AGPGDRVAILAPQGIDYVAGFFA 111 (612)
T ss_pred CcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHH-h-cCCCCEEEEECCCChhHHHHHHH
Confidence 67888777654 35689987521 12489999999999999999988 4 99999999999999999999999
Q ss_pred HHHhCCeEecc-CCCCC--HHHHHHHHHhcCCceEEEEeeccchHHhhhcC-------CCCEEEecCCCcccccCCCccc
Q 037622 113 LLYLGAIVIPM-NPLLS--VSEIKKQVTLCKTKISLAFTIYENVDKLRSWG-------TTPVVAVPENLVNDFKEGRFSD 182 (560)
Q Consensus 113 ~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~-------~~~vi~~~~~~~~~~~~~~~~~ 182 (560)
|+++|++++|+ ++.++ .+++.++++.+++ +++++++.....+.... ...++.+++..
T Consensus 112 ~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------- 178 (612)
T PRK12476 112 AIKAGTIAVPLFAPELPGHAERLDTALRDAEP--TVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIP----------- 178 (612)
T ss_pred HHHcCceeEecCCCCcchhHHHHHHHHHhCCC--CEEEEcHHHHHHHHHHHhhcccccCceEEEecccc-----------
Confidence 99999999999 57766 7899999999999 99998876655432211 01233322110
Q ss_pred HHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhccccc-CCCCcEEEEecChhhHH
Q 037622 183 FHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY-LSSEAVFLAVLPMFHIY 261 (560)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~ 261 (560)
.............++++++|+|||||||.||||+++|+++..++..... ... +.+++++++++|++|..
T Consensus 179 -----~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~~~~~l~~~Pl~h~~ 248 (612)
T PRK12476 179 -----DSAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMIL-----SIDLLDRNTHGVSWLPLYHDM 248 (612)
T ss_pred -----ccccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHH-----HhccCCCCceEEEeCCccccc
Confidence 0000111122345689999999999999999999999999877665543 244 67889999999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCC--c--CHHHHHHHHH--HhCcceeccCcHHHHHHHHhhh---ccCCCCCCccceeeccc
Q 037622 262 GLSLFALGLLSLGPSVVVMRR--F--EASEMLKVID--KYGVTHFPVVPPILMALTKAAK---GLCGNSLKSLKQVSSGA 332 (560)
Q Consensus 262 g~~~~~~~~l~~G~~~v~~~~--~--~~~~~~~~l~--~~~~t~l~~~P~~~~~l~~~~~---~~~~~~l~~lr~~~~~g 332 (560)
|+...+..++ .|+++++..+ + ++..+++.++ ++++++++.+|+++..+..... .....+++++| +++||
T Consensus 249 g~~~~~~~~~-~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg 326 (612)
T PRK12476 249 GLSMIGFPAV-YGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGS 326 (612)
T ss_pred chHHHHHHHh-cCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecc
Confidence 9864444445 4555554442 3 7889999995 4899999999999888765311 11234678899 99999
Q ss_pred CCCCHHHHHHHHHhCC-----CCeeecccchhhcccccccCCCCC-------------------------CCCccccccc
Q 037622 333 APANSKIIEDFVGAFP-----HVDFIQGYGMTESTAVGTRGFNTK-------------------------KFSKYFSVGL 382 (560)
Q Consensus 333 ~~~~~~~~~~~~~~~~-----~~~i~~~YG~tE~~~~~~~~~~~~-------------------------~~~~~~~~G~ 382 (560)
+++++++.+.+.+.|+ ..++++.||+||++..++...... .....+++|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~ 406 (612)
T PRK12476 327 EPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQ 406 (612)
T ss_pred cCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCC
Confidence 9999999999998872 345999999999876544321110 0012358899
Q ss_pred ccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccC------------------CCCceecCceEEE
Q 037622 383 LAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID------------------KEGWLHTGDIAYF 444 (560)
Q Consensus 383 ~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~------------------~~~~~~TGD~~~~ 444 (560)
|+|+++++|+|++++++++.|+.|||+++|++++.||+++|+.|.+.|. .++||+|||+|++
T Consensus 407 ~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~ 486 (612)
T PRK12476 407 VARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY 486 (612)
T ss_pred cCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeecccccee
Confidence 9999999999966599999999999999999999999999999988773 1359999999998
Q ss_pred ccCCcEEEEccccceeeecceecChHHHHHHHhc-CCCccc--EEEEcccCCCCCceEEEEEEecCCC-CCCHHHHHHHH
Q 037622 445 DEDGYLYIVDRLKEVIKYNGYQISPADLETVLIC-HPEILD--VAVTGAMDKVLGEIPVAFVVRRDGS-TLTEAAVIDYL 520 (560)
Q Consensus 445 ~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~-~~~v~~--~~v~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~ 520 (560)
+||+++|+||+||+||++|++|+|.|||++|.+ ||.|.+ +++++.+++. ++.++++++..++. ..+.+++.+++
T Consensus 487 -~dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~ 564 (612)
T PRK12476 487 -LDGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSRADPAPAIDAI 564 (612)
T ss_pred -ECCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCcccccHHHHHHHH
Confidence 599999999999999999999999999999985 799999 7778888776 78889998887664 35678889999
Q ss_pred HhccC-CCCC-cceEEEec--CCCCCCCCcchHHHHHHHHhc
Q 037622 521 AQRVA-PYKK-VRRVVFTK--SIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 521 ~~~l~-~~~~-p~~i~~~~--~lP~t~~GKi~r~~L~~~~~~ 558 (560)
++.+. .+++ |+.+++++ +||+|++|||+|++|++.+.+
T Consensus 565 ~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~ 606 (612)
T PRK12476 565 RAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLD 606 (612)
T ss_pred HHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHc
Confidence 99887 4777 57788886 699999999999999999764
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-66 Score=536.75 Aligned_cols=460 Identities=27% Similarity=0.395 Sum_probs=394.3
Q ss_pred HhccCCCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCC
Q 037622 48 IFSHKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLL 127 (560)
Q Consensus 48 ~~~~~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~ 127 (560)
-.++.+..++|++++ ++++||+||.++++++|..|. ++|+|+++++|+++++++++||+++|++++|+++.+
T Consensus 8 ~~~~~~~~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~------~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~ 79 (471)
T PRK07787 8 AVAAAADIADAVRIG--GRVLSRSDLAGAATAVAERVA------GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDS 79 (471)
T ss_pred HhhcccCCceEEEeC--CcEEEHHHHHHHHHHHHHHhc------cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCC
Confidence 345556779999987 899999999999999999985 369999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCCCCCCEEEE
Q 037622 128 SVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAI 207 (560)
Q Consensus 128 ~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 207 (560)
+.+++.++++.+++ ++++++..... ........... . .. ........+++++++
T Consensus 80 ~~~~l~~~l~~~~~--~~il~~~~~~~-----~~~~~~~~~~~------~---~~----------~~~~~~~~~~~~a~i 133 (471)
T PRK07787 80 GVAERRHILADSGA--QAWLGPAPDDP-----AGLPHVPVRLH------A---RS----------WHRYPEPDPDAPALI 133 (471)
T ss_pred ChHHHHHHHHhcCC--CEEEecCCccc-----ccccceeeecc------c---cc----------cccCCCCCCCceEEE
Confidence 99999999999999 88887653110 00111110000 0 00 001112356899999
Q ss_pred EcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHH
Q 037622 208 LYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASE 287 (560)
Q Consensus 208 ~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 287 (560)
+|||||||.||+|+++|.++...+..... ...+..+++++..+|++|..|+...++.++..|+++++.+.+++..
T Consensus 134 ~~TSGTTG~PK~v~~t~~~l~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~ 208 (471)
T PRK07787 134 VYTSGTTGPPKGVVLSRRAIAADLDALAE-----AWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEA 208 (471)
T ss_pred EECCCCCCCCCEEEEeHHHHHHHHHHHHH-----hcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHH
Confidence 99999999999999999999988776665 4567788999999999999999888999999999999998899999
Q ss_pred HHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhccccccc
Q 037622 288 MLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTR 367 (560)
Q Consensus 288 ~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~ 367 (560)
+++.++ +++|++.++|+++..+.+. . .....+.++|.+++||+++++++.+++.+.+ +.++++.||+||++...+.
T Consensus 209 ~~~~i~-~~~t~~~~~P~~~~~l~~~-~-~~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~ 284 (471)
T PRK07787 209 YAQALS-EGGTLYFGVPTVWSRIAAD-P-EAARALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERYGMTETLITLST 284 (471)
T ss_pred HHHHHh-hCceEEEcchHHHHHHHhC-c-cccccccceeEEEECCCCCCHHHHHHHHHHc-CCCeecccCccccCcceec
Confidence 999999 9999999999999999864 2 1234578899999999999999999999988 7899999999999875543
Q ss_pred CCCCCCCCcccccccccCCeEEEEEeCCCCccCC-CCC-cceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEc
Q 037622 368 GFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLP-PGS-TGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFD 445 (560)
Q Consensus 368 ~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~-~g~-~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~ 445 (560)
.. .....++++|+|++++.++++|+ ++++++ .|+ .|||+++|++++.||+++++.+.+.|..++||+|||+|+++
T Consensus 285 ~~--~~~~~~~~vG~~~~g~~~~i~d~-~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~ 361 (471)
T PRK07787 285 RA--DGERRPGWVGLPLAGVETRLVDE-DGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVD 361 (471)
T ss_pred CC--CCcccCCcccccCCCcEEEEECC-CCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEc
Confidence 32 22345678999999999999994 577776 344 79999999999999999999999999878999999999999
Q ss_pred cCCcEEEEccc-cceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcc
Q 037622 446 EDGYLYIVDRL-KEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRV 524 (560)
Q Consensus 446 ~~g~l~~~GR~-~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l 524 (560)
+||.+++.||. ||+++.+|++|++.+||++|.++|.|.+++|++.++...++.+++++++. ...+.+++.++++++|
T Consensus 362 ~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~--~~~~~~~l~~~l~~~l 439 (471)
T PRK07787 362 PDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGA--DDVAADELIDFVAQQL 439 (471)
T ss_pred CCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeC--CCCCHHHHHHHHHhhc
Confidence 99999999996 89999999999999999999999999999999999888889999999873 3467889999999999
Q ss_pred CCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 525 APYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 525 ~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
++++.|..++++++||+|++||++|++|+++
T Consensus 440 ~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~~ 470 (471)
T PRK07787 440 SVHKRPREVRFVDALPRNAMGKVLKKQLLSE 470 (471)
T ss_pred ccccCCcEEEEeccCCCCCCccccHHHhccC
Confidence 9999999999999999999999999999864
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-66 Score=594.23 Aligned_cols=500 Identities=26% Similarity=0.355 Sum_probs=417.0
Q ss_pred CCCHHHHHhccC--CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 41 LLDVDSFIFSHK--HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 41 ~~~~~~~~~~~~--~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
..++.+.+.+.+ .++++|+++. .++++||+||+++++++|++|.+ ++++||+|+++++|+++++++++||+++|+
T Consensus 614 ~~~l~~~~~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~--~~~~g~~V~i~~~n~~~~~~~~la~~~~G~ 690 (1146)
T PRK08633 614 LPPLAEAWIDTAKRNWSRLAVADS-TGGELSYGKALTGALALARLLKR--ELKDEENVGILLPPSVAGALANLALLLAGK 690 (1146)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEcC-CCCcCcHHHHHHHHHHHHHHHHH--hCCCCCeEEEECCCchHHHHHHHHHHHcCC
Confidence 367777776655 3569999874 36799999999999999999976 589999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhc------C-CCCEEEecCCCcccccCCCcccHHHhhcccC
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSW------G-TTPVVAVPENLVNDFKEGRFSDFHKLIAGKF 191 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~------~-~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (560)
+++|+++..+.+++.++++.+++ +++++++...+.+... . ...++..++.. .. ......+.+......
T Consensus 691 v~v~l~~~~~~~~~~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~ 765 (1146)
T PRK08633 691 VPVNLNYTASEAALKSAIEQAQI--KTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLK-AK--ISKVDKLTALLAARL 765 (1146)
T ss_pred EEEEeCCCcCHHHHHHHHHHcCC--CEEEEcHHHHHHHhccCCchhcccCceEEEeehhc-cc--cchhHHHHHHHHhcc
Confidence 99999999999999999999999 9999887766655421 1 12333333211 00 001111111111110
Q ss_pred -CC-----CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHH
Q 037622 192 -DL-----VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSL 265 (560)
Q Consensus 192 -~~-----~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~ 265 (560)
+. .......++|+++++|||||||.||+|.++|+++...+..... .....++|++++.+|++|.+++..
T Consensus 766 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~-----~~~~~~~d~~l~~~p~~h~~g~~~ 840 (1146)
T PRK08633 766 LPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISD-----VFNLRNDDVILSSLPFFHSFGLTV 840 (1146)
T ss_pred CCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHH-----hcCCCCCCEEEEcCcHHHHHhHHH
Confidence 00 0013456789999999999999999999999999988777655 456788999999999999999977
Q ss_pred HHHHHhhCCCEEEEeC-CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHH
Q 037622 266 FALGLLSLGPSVVVMR-RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFV 344 (560)
Q Consensus 266 ~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~ 344 (560)
.++.++..|+++++.+ .+++..+++.++++++|++.++|++++.+.+. ......+++++|.+++||+++++++.+.++
T Consensus 841 ~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~ 919 (1146)
T PRK08633 841 TLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRN-KKLHPLMFASLRLVVAGAEKLKPEVADAFE 919 (1146)
T ss_pred HHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhc-cccCcccCCCeeeEEEcCCcCCHHHHHHHH
Confidence 7889999999998876 47899999999999999999999999999875 334456778999999999999999999999
Q ss_pred HhCCCCeeecccchhhcccccccCCCCC--------CCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccch
Q 037622 345 GAFPHVDFIQGYGMTESTAVGTRGFNTK--------KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTM 416 (560)
Q Consensus 345 ~~~~~~~i~~~YG~tE~~~~~~~~~~~~--------~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~ 416 (560)
+.+ ++++++.||+||++++++...... ...+.+++|+|+||++++++|++++++++.|+.|||+++|++++
T Consensus 920 ~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~ 998 (1146)
T PRK08633 920 EKF-GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVM 998 (1146)
T ss_pred HHh-CCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCcc
Confidence 998 899999999999987765443211 11346789999999999999988899999999999999999999
Q ss_pred hhhcCCchhhhhccCC---CCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCC--CcccEEEEccc
Q 037622 417 KEYINNADATMSTIDK---EGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHP--EILDVAVTGAM 491 (560)
Q Consensus 417 ~gy~~~~~~~~~~~~~---~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~--~v~~~~v~~~~ 491 (560)
.||+++|+.+.+.+.+ ++||+|||+|++|+||.+++.||.||+||.+|++|+|.|||+++.++| .+.+++|++.+
T Consensus 999 ~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~ 1078 (1146)
T PRK08633 999 KGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVP 1078 (1146)
T ss_pred ccccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEecc
Confidence 9999999999887732 389999999999999999999999999999999999999999999998 46679999999
Q ss_pred CCCCCceEEEEEEecCCCCCCHHHHHHHHHh-ccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 492 DKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQ-RVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 492 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
++..|+.++++++.. ..+.+++++++++ +++.+++|..+++++++|+|++||+||++|++...+
T Consensus 1079 ~~~~g~~~~~~v~~~---~~~~~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~ 1143 (1146)
T PRK08633 1079 DEKKGEKLVVLHTCG---AEDVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALA 1143 (1146)
T ss_pred CCCCCcEEEEEEecC---ccCHHHHHHHHHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHH
Confidence 999999999888862 3567889998875 699999999999999999999999999999988654
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-65 Score=543.80 Aligned_cols=505 Identities=29% Similarity=0.445 Sum_probs=410.3
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.++.++|.+.++ ++++|+++. ++++||+||.++++++|..|..++|+++|++|+++++|+++++++++||+++|++
T Consensus 25 ~~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 102 (560)
T PRK08751 25 RTVAEVFATSVAKFADRPAYHSF--GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLT 102 (560)
T ss_pred CcHHHHHHHHHHhCCCCceEEEC--CceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeE
Confidence 578888877664 558999986 7899999999999999999973379999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC----CCEEEecCCC--------------------cccc
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT----TPVVAVPENL--------------------VNDF 175 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~----~~vi~~~~~~--------------------~~~~ 175 (560)
++|++|.++.+++.++++.+++ +++++++.....+..... ..++..+... ....
T Consensus 103 ~v~l~p~~~~~~~~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (560)
T PRK08751 103 VVNVNPLYTPRELKHQLIDSGA--SVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEY 180 (560)
T ss_pred EeccCccCCHHHHHHHHHhcCC--eEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhcccccc
Confidence 9999999999999999999999 999988766544333211 1222211000 0000
Q ss_pred cCCCcccHHHhhcccCC-CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCC-CcEEEE
Q 037622 176 KEGRFSDFHKLIAGKFD-LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSS-EAVFLA 253 (560)
Q Consensus 176 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 253 (560)
.......+.+....... ........++++++++|||||||.||+|.++|.++...+.....+... ...+.. .++++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (560)
T PRK08751 181 RINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAG-TGKLEEGCEVVIT 259 (560)
T ss_pred CCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhcc-ccccCCCCceEEE
Confidence 01111222332222111 112233467899999999999999999999999998877655442210 011223 467788
Q ss_pred ecChhhHHhHHHHHHHHhhCCCEEEEeC-CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeeccc
Q 037622 254 VLPMFHIYGLSLFALGLLSLGPSVVVMR-RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGA 332 (560)
Q Consensus 254 ~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g 332 (560)
..|++|.+++....+.++..|++.++.. ++++..+++.++++++|++.++|.++..+.+. ....+.+++++|.+++||
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~-~~~~~~~l~~lr~v~~gG 338 (560)
T PRK08751 260 ALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNT-PGFDQIDFSSLKMTLGGG 338 (560)
T ss_pred ecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcC-cCcCCcchhhheeeeeCC
Confidence 8999999998655666677777766544 57899999999999999999999999999875 334455678999999999
Q ss_pred CCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEec
Q 037622 333 APANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG 412 (560)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~ 412 (560)
+++++.+.+.|.+.+ ++.+++.||+||++..++.+.. ......+++|.|++++.++++| +++.+++.|+.|||+++|
T Consensus 339 ~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~~ 415 (560)
T PRK08751 339 MAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPL-TLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKG 415 (560)
T ss_pred CCCCHHHHHHHHHHh-CCeEEEeeccccCCCceecccc-cccccCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEec
Confidence 999999999999988 8899999999999877655432 1223457899999999999999 678999999999999999
Q ss_pred ccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccC
Q 037622 413 PGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMD 492 (560)
Q Consensus 413 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~ 492 (560)
+.++.||+++++.+...++.+|||+|||+|+++++|.+++.||.+|+|+.+|.+|+|.+||+.+..+|+|.+++|++.++
T Consensus 416 ~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~ 495 (560)
T PRK08751 416 PQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPD 495 (560)
T ss_pred CccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCC
Confidence 99999999999999988888899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHH
Q 037622 493 KVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFL 556 (560)
Q Consensus 493 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~ 556 (560)
...++.++++++.. +...+.++++++++++++++++|..++++++||+|++||++|++|++..
T Consensus 496 ~~~ge~~~~~v~~~-~~~~~~~~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~~ 558 (560)
T PRK08751 496 EKSGEIVKVVIVKK-DPALTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDAA 558 (560)
T ss_pred CCCCceEEEEEEcC-CCCCCHHHHHHHHHHhhhhccCCeEEEEhhhCCCCccccccHHHHHHhh
Confidence 88888887777654 3456778999999999999999999999999999999999999999863
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-66 Score=551.36 Aligned_cols=499 Identities=22% Similarity=0.276 Sum_probs=399.8
Q ss_pred CCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 41 LLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 41 ~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
..|+.+.+.+.++ ++++|+++. ++++||+||+++++++|.+|.+ .|+++||+|+|+++|+.+++++++||+++|+
T Consensus 36 ~~tl~~~l~~~a~~~p~~~Ai~~~--~~~~Ty~eL~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~ 112 (600)
T PRK08279 36 KRSLGDVFEEAAARHPDRPALLFE--DQSISYAELNARANRYAHWAAA-RGVGKGDVVALLMENRPEYLAAWLGLAKLGA 112 (600)
T ss_pred cccHHHHHHHHHHhCCCCcEEEeC--CCcccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCCHHHHHHHHHHHhcCc
Confidence 3789998887775 559999987 7899999999999999999999 7999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC----CCEEEecCCCcccccCCCcccHHHhhcccCC--
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT----TPVVAVPENLVNDFKEGRFSDFHKLIAGKFD-- 192 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 192 (560)
+++++++.++.+++.++++.+++ ++++++.+....+..... ...+...+.... .....+.++.+.......
T Consensus 113 ~~v~l~~~~~~~~l~~~l~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 189 (600)
T PRK08279 113 VVALLNTQQRGAVLAHSLNLVDA--KHLIVGEELVEAFEEARADLARPPRLWVAGGDTL-DDPEGYEDLAAAAAGAPTTN 189 (600)
T ss_pred EEeecCCCCCHHHHHHHHHhcCC--CEEEEChHHHHHHHHHhhhhcccceEEEecCccc-cccccHHHHhhhcccCCccC
Confidence 99999999999999999999999 999998876655543221 122222211100 001111112211111111
Q ss_pred CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhh
Q 037622 193 LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLS 272 (560)
Q Consensus 193 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~ 272 (560)
........++++++|+|||||||.||+|+++|.++..++..... ...+.++|+++..+|++|.+++...++.++.
T Consensus 190 ~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~ 264 (600)
T PRK08279 190 PASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGG-----LLRLTPDDVLYCCLPLYHNTGGTVAWSSVLA 264 (600)
T ss_pred CCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHH-----hcCCCCCcEEEEecCchhhhhHHHHHHHHHh
Confidence 11123345689999999999999999999999999998887766 4678899999999999999999877888899
Q ss_pred CCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCee
Q 037622 273 LGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDF 352 (560)
Q Consensus 273 ~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i 352 (560)
.|+++++.+.+++..+++.++++++|++.++|++++.+... .........++|.+ +|+.+++++++.+.+.|+...+
T Consensus 265 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~-~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l 341 (600)
T PRK08279 265 AGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQ-PPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRI 341 (600)
T ss_pred cCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhC-CCCccccCcceeEE--ecCCCCHHHHHHHHHHhCccee
Confidence 99999999999999999999999999999999999998865 22223344566653 4778999999999999966679
Q ss_pred ecccchhhcccccccCCCCCCCCcccccccccC----CeEEEEEeCCCC----------ccCCCCCcceEE--Eecccch
Q 037622 353 IQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAP----NIQAKVVDWVNG----------CFLPPGSTGELW--LRGPGTM 416 (560)
Q Consensus 353 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p----~~~~~v~d~~~~----------~~~~~g~~Gel~--v~~~~~~ 416 (560)
++.||+||++...+.. ....+++|.+.+ +..+...+.+.+ .+++.|+.||++ +.+++++
T Consensus 342 ~~~YG~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~ 416 (600)
T PRK08279 342 LEFYAASEGNVGFINV-----FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPF 416 (600)
T ss_pred eeeecccccceeeccc-----CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCcccc
Confidence 9999999988643321 124456776666 443332222222 357889999998 6789999
Q ss_pred hhhcCCchhhhhcc------CCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcc
Q 037622 417 KEYINNADATMSTI------DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGA 490 (560)
Q Consensus 417 ~gy~~~~~~~~~~~------~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~ 490 (560)
.|| ++++.+...+ +.++||+|||+|++++||.+++.||.||+||++|++|+|.|||+++.++|+|.+++|+++
T Consensus 417 ~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv 495 (600)
T PRK08279 417 DGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGV 495 (600)
T ss_pred ccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEe
Confidence 999 8888887654 246899999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCC-CceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 491 MDKVL-GEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 491 ~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+++.. +...+++++..++...+.++++++|+++|++|++|+.++++++||+|.+||++|++|++++.+.
T Consensus 496 ~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 565 (600)
T PRK08279 496 EVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDP 565 (600)
T ss_pred ecCCCCCccceeEEEecCCccCCHHHHHHHHHhhCccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCc
Confidence 76643 4445666666555567889999999999999999999999999999999999999999876553
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-66 Score=541.52 Aligned_cols=485 Identities=19% Similarity=0.254 Sum_probs=400.7
Q ss_pred HHHHHhccC--CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEe
Q 037622 44 VDSFIFSHK--HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVI 121 (560)
Q Consensus 44 ~~~~~~~~~--~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 121 (560)
+.+.+.+.+ .++++|+.+. ++++||+||.+++.++|..|.+ .|+++|++|+|+++|+.+++++++||+++|++++
T Consensus 2 ~~~~l~~~a~~~p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~-~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v 78 (502)
T TIGR01734 2 LIEAIQAFAETYPQTIAYRYQ--GQELTYQQLKEQSDRLAAFIQK-RILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYI 78 (502)
T ss_pred HHHHHHHHHHHCCCceEEEcC--CcEEeHHHHHHHHHHHHHHHHH-hCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence 344455444 3568888876 7899999999999999999999 7999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCCCC
Q 037622 122 PMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQ 201 (560)
Q Consensus 122 ~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (560)
|+++.++.+++.++++..++ +.++++......... ..++.+.. ..................+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~~ii~~~~~~~~~~~---~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 140 (502)
T TIGR01734 79 PVDTSIPSERIEMIIEAAGP--ELVIHTAELSIDAVG---TQIITLSA-------------LEQAETSGGPVSFDHAVKG 140 (502)
T ss_pred CCCCcChHHHHHHHHHhcCC--CEEEecccccccccC---CceEEchH-------------hhhhhhhcCCccccccCCC
Confidence 99999999999999999999 888887654322211 11222211 0111111111111223457
Q ss_pred CCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeC
Q 037622 202 QDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMR 281 (560)
Q Consensus 202 ~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 281 (560)
++.++++|||||||.||+|+++|.++...+..... ......+++++...|++|..++. .++.++..|+++++.+
T Consensus 141 ~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~-----~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~~ 214 (502)
T TIGR01734 141 DDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLA-----DFPLSEGKQFLNQAPFSFDLSVM-DLYPCLASGGTLHCLD 214 (502)
T ss_pred CCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHH-----hCCCCCCceEEeecCceechhHH-HHHHHHHCCCEEEEcC
Confidence 89999999999999999999999999988776655 35678899999999999999884 7888999999999887
Q ss_pred C---cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccch
Q 037622 282 R---FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGM 358 (560)
Q Consensus 282 ~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~ 358 (560)
+ .++..+++.+.+++++.+.++|+++..+... .......+++++.++++|+++++++.+++.+.++++++++.||+
T Consensus 215 ~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~-~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~ 293 (502)
T TIGR01734 215 KDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLD-PNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGP 293 (502)
T ss_pred HHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhc-cccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccC
Confidence 5 5789999999999999999999999877654 33344567899999999999999999999999999999999999
Q ss_pred hhcccccccCCCCC---CCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhcc---CC
Q 037622 359 TESTAVGTRGFNTK---KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI---DK 432 (560)
Q Consensus 359 tE~~~~~~~~~~~~---~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~ 432 (560)
||++..++...... ......++|.+.|+++++|+| +++.+++.|+.|||+++|++++.||+++++.+...| ++
T Consensus 294 tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~ 372 (502)
T TIGR01734 294 TEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEG 372 (502)
T ss_pred CcceEEEEEEEccccccccCCccccccccCCCEEEEEC-CCCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCC
Confidence 99876444321111 122345799999999999999 568999999999999999999999999999888765 34
Q ss_pred CCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEccc-CCCCCceEEEEEEecCCCCC
Q 037622 433 EGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAM-DKVLGEIPVAFVVRRDGSTL 511 (560)
Q Consensus 433 ~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~-~~~~~~~~~~~v~~~~~~~~ 511 (560)
.+||+|||+|+++++ ++++.||.+|+|+++|++|+|.+||+++.++|.|.++++++.. ....++.+++++++......
T Consensus 373 ~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~ 451 (502)
T TIGR01734 373 QPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFE 451 (502)
T ss_pred cEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccc
Confidence 469999999999876 9999999999999999999999999999999999999999865 44556778888887654322
Q ss_pred C----HHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 512 T----EAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 512 ~----~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
. .+++++.++++|+++++|+.++++++||+|++||++|++|++++.+
T Consensus 452 ~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~~ 502 (502)
T TIGR01734 452 KEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVNG 502 (502)
T ss_pred cchhhHHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhcC
Confidence 2 2678999999999999999999999999999999999999998753
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-66 Score=650.64 Aligned_cols=482 Identities=21% Similarity=0.258 Sum_probs=417.4
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.+++++|.++++ ++++|++++ ++++||+||.++++++|+.|.+ .|+++|++|+|+++|++++++++|||+++|++
T Consensus 511 ~~~~~~~~~~a~~~p~~~A~~~~--~~~~TY~eL~~~~~~lA~~L~~-~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~ 587 (5163)
T PRK12316 511 RGVHRLFEEQVERTPEAPALAFG--EETLDYAELNRRANRLAHALIE-RGVGPDVLVGVAMERSIEMVVALLAILKAGGA 587 (5163)
T ss_pred CCHHHHHHHHHHHCCCCeEEEeC--CceEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 579999988775 569999987 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVI 199 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (560)
++|++|.++.+++.++++.+++ ++++++......+.......++.++... ...............
T Consensus 588 ~vpld~~~p~~rl~~il~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 652 (5163)
T PRK12316 588 YVPLDPEYPAERLAYMLEDSGV--QLLLSQSHLGRKLPLAAGVQVLDLDRPA-------------AWLEGYSEENPGTEL 652 (5163)
T ss_pred EeccCccCcHHHHHHHHHhCCC--CEEEEChhhhhhCCcccCceEEEecCcc-------------hhhccCCCCCCCCCC
Confidence 9999999999999999999999 9999887654443322223333333211 001111111222344
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.++++++|+|||||||.||||+++|+++.+.+.+... ..+++++++++...|++|..++. .++.+|..|+++++
T Consensus 653 ~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~fd~~~~-~~~~~L~~G~~l~i 726 (5163)
T PRK12316 653 NPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQ-----AYGLGVGDTVLQKTPFSFDVSVW-EFFWPLMSGARLVV 726 (5163)
T ss_pred CCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHH-----hcCCCCCCEEEeeCCeehHHHHH-HHHHHHhCCCEEEE
Confidence 6789999999999999999999999999998887776 56788999999999999999984 88999999999999
Q ss_pred eC---CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeeccc
Q 037622 280 MR---RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGY 356 (560)
Q Consensus 280 ~~---~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~Y 356 (560)
.+ .+++..+++.++++++|++.++|++++.|.+. . ....++++|.+++|||++++++.+.|.+.+++++++|.|
T Consensus 727 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~-~--~~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 803 (5163)
T PRK12316 727 AAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQD-E--DVASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLY 803 (5163)
T ss_pred CCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhc-c--ccccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCc
Confidence 85 37899999999999999999999999999764 2 234678999999999999999999999888899999999
Q ss_pred chhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccC-----
Q 037622 357 GMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID----- 431 (560)
Q Consensus 357 G~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~----- 431 (560)
|+||++..++............++|+|++|++++|+| +++++++.|+.|||+|+|++++.||+++|+.|.+.|.
T Consensus 804 G~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~ 882 (5163)
T PRK12316 804 GPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILD-ANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFV 882 (5163)
T ss_pred CcChheeeeeEEecccccCCCCCCccccCCCEEEEEC-CCCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCC
Confidence 9999986554433222234567899999999999999 5789999999999999999999999999999998873
Q ss_pred -CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCC
Q 037622 432 -KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGST 510 (560)
Q Consensus 432 -~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 510 (560)
+++||+|||+|++++||.++++||.||+||++|++|+|.|||++|.++|+|.+++|++.+ ++.++++|++.++..
T Consensus 883 ~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~ 958 (5163)
T PRK12316 883 AGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGG 958 (5163)
T ss_pred CCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCC
Confidence 356999999999999999999999999999999999999999999999999999999886 567999999887766
Q ss_pred CCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 511 LTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 511 ~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
...++++++++++|+.|++|..++++++||+|++||+||++|.+.
T Consensus 959 ~~~~~l~~~l~~~Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~ 1003 (5163)
T PRK12316 959 DWREALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKALPAP 1003 (5163)
T ss_pred CCHHHHHHHHHhhCCCccCCCeEEEHhhCCCCCCCChhHHhhcCc
Confidence 778899999999999999999999999999999999999999764
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-66 Score=598.96 Aligned_cols=483 Identities=21% Similarity=0.292 Sum_probs=407.9
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.++.++|.++++ ++++|+++. ++.+||+||.++++++|+.|.+ .|+++|++|+|+++|+++++++++||+++|++
T Consensus 458 ~~l~~~~~~~~~~~p~~~Al~~~--~~~~Ty~eL~~~~~~la~~L~~-~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~ 534 (1296)
T PRK10252 458 TTLSALVAQQAAKTPDAPALADA--RYQFSYREMREQVVALANLLRE-RGVKPGDSVAVALPRSVFLTLALHAIVEAGAA 534 (1296)
T ss_pred CCHHHHHHHHHHhCCCCeEEEcC--CCcEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 688888877764 569999987 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVI 199 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (560)
++|++|.++.+++.++++.+++ ++++++......+.......+..... .... .........
T Consensus 535 ~vpld~~~p~~~~~~~l~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~----------------~~~~-~~~~~~~~~ 595 (1296)
T PRK10252 535 WLPLDTGYPDDRLKMMLEDARP--SLLITTADQLPRFADVPDLTSLCYNA----------------PLAP-QGAAPLQLS 595 (1296)
T ss_pred EEecCccCHHHHHHHHHHhCCC--CEEEECcchhhhcccCCCceeeeccc----------------cccc-ccCCCCCCC
Confidence 9999999999999999999999 99998876554443221111111110 0000 000111223
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.++++++|+|||||||.||||+++|+++.+.+.+... ...+.++|+++...|++|..++. .++.++..|+++++
T Consensus 596 ~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~-----~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~~ 669 (1296)
T PRK10252 596 QPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQN-----HYPLTADDVVLQKTPCSFDVSVW-EFFWPFIAGAKLVM 669 (1296)
T ss_pred CCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHH-----hcCCCCCCEEEEeCCcchhhhHH-HHHHHHhCCCEEEE
Confidence 5789999999999999999999999999988877765 56788999999999999998874 78899999999999
Q ss_pred eC---CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhcc-CCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecc
Q 037622 280 MR---RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGL-CGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQG 355 (560)
Q Consensus 280 ~~---~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 355 (560)
.+ ..++..+++.++++++|++.++|+++..+++..... ....+.++|.+++|||++++++.+.|.+.+ +++++|.
T Consensus 670 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~l~n~ 748 (1296)
T PRK10252 670 AEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLT-GAPLHNL 748 (1296)
T ss_pred CChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcC-CCEEEeC
Confidence 76 368999999999999999999999999987652111 123467899999999999999999999887 8999999
Q ss_pred cchhhcccccccCCCCCC-----CCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhcc
Q 037622 356 YGMTESTAVGTRGFNTKK-----FSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI 430 (560)
Q Consensus 356 YG~tE~~~~~~~~~~~~~-----~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~ 430 (560)
||+||++..++....... .....++|+|++++.+.|+| +++++++.|+.|||+|+|++++.||+++|+.|.+.|
T Consensus 749 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f 827 (1296)
T PRK10252 749 YGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRF 827 (1296)
T ss_pred CCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccchhhCCCcccchhhc
Confidence 999999876654432221 22356899999999999999 689999999999999999999999999999999888
Q ss_pred CC------CCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEccc----CCCCC--ce
Q 037622 431 DK------EGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAM----DKVLG--EI 498 (560)
Q Consensus 431 ~~------~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~----~~~~~--~~ 498 (560)
.. ++||+|||+|++++||.++++||.||+||++|++|++.|||++|.++|+|.+++|+... +...+ ..
T Consensus 828 ~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~ 907 (1296)
T PRK10252 828 IADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQ 907 (1296)
T ss_pred ccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccE
Confidence 43 34999999999999999999999999999999999999999999999999999876542 11122 46
Q ss_pred EEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHH
Q 037622 499 PVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554 (560)
Q Consensus 499 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~ 554 (560)
+++++++..+...+.++++++++++|+.|++|..++.+++||+|++||++|++|++
T Consensus 908 lva~v~~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~ 963 (1296)
T PRK10252 908 LVGYLVSQSGLPLDTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPL 963 (1296)
T ss_pred EEEEEEcCCCCCCCHHHHHHHHHhhCchhcCCcEEEEecCCCCCCCcChhHHhcCC
Confidence 89999987776677889999999999999999999999999999999999999975
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-65 Score=540.00 Aligned_cols=501 Identities=25% Similarity=0.352 Sum_probs=409.5
Q ss_pred CCHHHHHhccCC--CCceEEEECC--CCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhC
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSL--SGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~--~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G 117 (560)
+|+.+++.++++ +++++++... ..+++||+||.++++++|++|.+ .|+++||+|+++++|+++++++++||+++|
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~-~g~~~gd~v~i~~~~~~~~~~~~la~~~~G 88 (542)
T PRK06018 10 LLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDR-DGIKLGDRVATIAWNTWRHLEAWYGIMGIG 88 (542)
T ss_pred CCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHHHHhcC
Confidence 789998876665 5588887521 23789999999999999999999 799999999999999999999999999999
Q ss_pred CeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC-----CCEEEecCCCc-ccccCCCcccHHHhhcccC
Q 037622 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-----TPVVAVPENLV-NDFKEGRFSDFHKLIAGKF 191 (560)
Q Consensus 118 ~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~ 191 (560)
++++|+++.++.+++..+++.+++ +.++++....+.+..... ..++...+... ..........+.+++....
T Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (542)
T PRK06018 89 AICHTVNPRLFPEQIAWIINHAED--RVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAEAD 166 (542)
T ss_pred eEeeccccccCHHHHHHHHhccCC--CEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhccCC
Confidence 999999999999999999999999 999988766554432211 22333322110 0001112234454444332
Q ss_pred CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHH-HHH-HHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHH
Q 037622 192 DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFI-AAV-ELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALG 269 (560)
Q Consensus 192 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~ 269 (560)
.........++++++++|||||||.||+|++||.+.. ... ..... ...+..+|+++...|++|.+++. ..+.
T Consensus 167 ~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~p~~h~~~~~-~~~~ 240 (542)
T PRK06018 167 GDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGD-----ALGTSAADTMLPVVPLFHANSWG-IAFS 240 (542)
T ss_pred cccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhh-----hcCCCCCCEEEEecCHHHHhhhH-HHHh
Confidence 2222334566889999999999999999999999743 222 11222 35578899999999999998885 4456
Q ss_pred HhhCCCEEEEeC-CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCC
Q 037622 270 LLSLGPSVVVMR-RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP 348 (560)
Q Consensus 270 ~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~ 348 (560)
++..|+++++.. .+++..+++.++++++|.+.++|+++..+.+. ......+++++|.++++|+++++.++++|++ +
T Consensus 241 ~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~-~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~- 317 (542)
T PRK06018 241 APSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQY-MEKEGLKLPHLKMVVCGGSAMPRSMIKAFED-M- 317 (542)
T ss_pred hhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhc-ccccCCCcccceEEEEcCCCCCHHHHHHHHH-h-
Confidence 788999998865 57889999999999999999999999999876 3333456789999999999999999999999 6
Q ss_pred CCeeecccchhhcccccccCCCCCC---------CCcccccccccCCeEEEEEeCCCCccCCCC--CcceEEEecccchh
Q 037622 349 HVDFIQGYGMTESTAVGTRGFNTKK---------FSKYFSVGLLAPNIQAKVVDWVNGCFLPPG--STGELWLRGPGTMK 417 (560)
Q Consensus 349 ~~~i~~~YG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g--~~Gel~v~~~~~~~ 417 (560)
++++++.||+||++.+++.+..... .....++|+|.++++++++| +++++++.+ ..|||+++|++++.
T Consensus 318 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~ 396 (542)
T PRK06018 318 GVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAA 396 (542)
T ss_pred CCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcch
Confidence 8999999999999987654421111 01235789999999999999 567777653 57999999999999
Q ss_pred hhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCc
Q 037622 418 EYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGE 497 (560)
Q Consensus 418 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~ 497 (560)
||+++. ...++.++||+|||+++++++|.+++.||.+|+|+.+|.+|++.+||+++.++|+|.+++|++.+++..++
T Consensus 397 gy~~~~---~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~ 473 (542)
T PRK06018 397 AYYRVD---GEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDE 473 (542)
T ss_pred hhhcCc---ccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCc
Confidence 999842 33455789999999999999999999999999999999999999999999999999999999999988888
Q ss_pred eEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 498 IPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 498 ~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
.+.+++++.++...+.++++++++++++.++.|..++++++||+|++||++|++|++.+.+
T Consensus 474 ~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~ 534 (542)
T PRK06018 474 RPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKD 534 (542)
T ss_pred eeEEEEEeCCCCCCCHHHHHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhc
Confidence 8999999888777788899999999999999999999999999999999999999999875
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-65 Score=537.20 Aligned_cols=482 Identities=27% Similarity=0.367 Sum_probs=389.1
Q ss_pred CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHH
Q 037622 53 HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEI 132 (560)
Q Consensus 53 ~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l 132 (560)
+++++|+++..+++++||+||.++++++|+.|.+ +|+++||+|+++++|++++++++|||+++|++++|+++.++.+++
T Consensus 10 ~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~-~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~~~~~ 88 (501)
T PRK13390 10 APDRPAVIVAETGEQVSYRQLDDDSAALARVLYD-AGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLTAPEA 88 (501)
T ss_pred CCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCCHHHH
Confidence 5678999876557899999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEEeeccchHHhhhcCC-CCE-EEecCCCcccccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcC
Q 037622 133 KKQVTLCKTKISLAFTIYENVDKLRSWGT-TPV-VAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYS 210 (560)
Q Consensus 133 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-~~v-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T 210 (560)
.+++..+++ +++++++........... ..+ +.+... ......+++....... .....++.++++||
T Consensus 89 ~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----~~~~~~~~a~i~~T 156 (501)
T PRK13390 89 DYIVGDSGA--RVLVASAALDGLAAKVGADLPLRLSFGGE------IDGFGSFEAALAGAGP----RLTEQPCGAVMLYS 156 (501)
T ss_pred HHHHHhcCC--cEEEEcchhhhHHHHhhhccceEEEecCc------ccccccHHHHhcccCC----CCCCCcccEEEEeC
Confidence 999999999 888887654332222111 111 111111 1111223222221111 01122357999999
Q ss_pred CCCCCCchhhhh--hhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHH
Q 037622 211 SGTTGASKGAEL--THGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEM 288 (560)
Q Consensus 211 SGTTG~PK~v~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~ 288 (560)
|||||.||+|++ +|.++........... .....+..++++++.+|++|.+++.. ....+..|+++++.+.+++..+
T Consensus 157 SGTTG~PKgV~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~h~~~~~~-~~~~~~~g~~~~~~~~~~~~~~ 234 (501)
T PRK13390 157 SGTTGFPKGIQPDLPGRDVDAPGDPIVAIA-RAFYDISESDIYYSSAPIYHAAPLRW-CSMVHALGGTVVLAKRFDAQAT 234 (501)
T ss_pred CCCCCCCCEEEeeccccccccchhhhHhhH-HHHhCCCCCCeEEecccchhhhHHHH-HHHHHhcCceEEEcCCcCHHHH
Confidence 999999999995 4555443221110000 00356788999999999999998753 3445678999999888999999
Q ss_pred HHHHHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhccccccc
Q 037622 289 LKVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTR 367 (560)
Q Consensus 289 ~~~l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~ 367 (560)
++.++++++|++.++|+++..+.+.... .....++++|.+++||+++++++.+.+.+.+ +..+++.||+||++.++..
T Consensus 235 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~ 313 (501)
T PRK13390 235 LGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL-GPIVYEYYSSTEAHGMTFI 313 (501)
T ss_pred HHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhc-CCceeeeecccccCceEEe
Confidence 9999999999999999999998764221 1234578999999999999999999999988 7899999999999875543
Q ss_pred CCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCC--CCceecCceEEEc
Q 037622 368 GFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDK--EGWLHTGDIAYFD 445 (560)
Q Consensus 368 ~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~~~ 445 (560)
... ......+++|+|+|+ .++++| +++++++.|+.|||++++++++.||+++|+.+...+.. ++|++|||+|+++
T Consensus 314 ~~~-~~~~~~~~~G~~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~ 390 (501)
T PRK13390 314 DSP-DWLAHPGSVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVD 390 (501)
T ss_pred cch-hhccCCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEEC
Confidence 221 112356789999999 699999 67899999999999999999999999999999887643 6799999999999
Q ss_pred cCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCC---HHHHHHHHHh
Q 037622 446 EDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLT---EAAVIDYLAQ 522 (560)
Q Consensus 446 ~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~ 522 (560)
++|.+++.||.||+||.+|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++..+.... .+++++++++
T Consensus 391 ~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~ 470 (501)
T PRK13390 391 EDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRS 470 (501)
T ss_pred CCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998889999998876553322 4689999999
Q ss_pred ccCCCCCcceEEEecCCCCCCCCcchHHHHH
Q 037622 523 RVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553 (560)
Q Consensus 523 ~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~ 553 (560)
+|+.+++|..++++++||+|++||++|++||
T Consensus 471 ~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 471 RIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred hcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence 9999999999999999999999999999985
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=536.54 Aligned_cols=503 Identities=28% Similarity=0.451 Sum_probs=410.5
Q ss_pred CCHHHHHhccC--CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHK--HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~--~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.++.+++.+.+ .++++|+++. ++.+||.||.++++++|.+|.+ +|+++|++|+++++|+++++++++||+++|++
T Consensus 21 ~~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~-~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~ 97 (541)
T TIGR03205 21 GTLPDLLSKAAADYGPRPALEFR--DRPITYTELEAMAETAAAALLR-AGYGKDASVALYLGNTPDHPINFFGALKAGAR 97 (541)
T ss_pred CCHHHHHHHHHHHcCCCceEEEC--CcEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHhcCeE
Confidence 58888887765 3669999886 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccc--hHHhhh---cC-CCCEEEecCCCcccc--------cCCCcccHHH
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYEN--VDKLRS---WG-TTPVVAVPENLVNDF--------KEGRFSDFHK 185 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~--~~~~~~---~~-~~~vi~~~~~~~~~~--------~~~~~~~~~~ 185 (560)
++|++|.++.+++.++++.+++ +.+++++.. .....+ .. ...++.......... .......+++
T Consensus 98 ~v~l~~~~~~~~l~~~i~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (541)
T TIGR03205 98 VVHLSPLDGERALSHKLSDSGA--RLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYAD 175 (541)
T ss_pred EEecCCCCCHHHHHHHHhhcCc--eEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHH
Confidence 9999999999999999999999 888887531 111111 11 122233222110000 0112334444
Q ss_pred hhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHH
Q 037622 186 LIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSL 265 (560)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~ 265 (560)
.+.............++++++++|||||||.||+|+++|.++.....................+++++..|++|.+++..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~ 255 (541)
T TIGR03205 176 FVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTV 255 (541)
T ss_pred HHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHHHHHH
Confidence 44332222222345678999999999999999999999999876544222110000112234578999999999999877
Q ss_pred HHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHH
Q 037622 266 FALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVG 345 (560)
Q Consensus 266 ~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~ 345 (560)
.++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++. .......++++|.+++||+++++++.+++.+
T Consensus 256 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~l~~i~~gg~~~~~~~~~~~~~ 334 (541)
T TIGR03205 256 ILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALAND-PSLEKRDLSSLATIGSGGAPLPVEVANFFER 334 (541)
T ss_pred HHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhC-ccccccCccccceEEEccccCCHHHHHHHHH
Confidence 788899999999998888999999999999999999999999998864 3333456789999999999999999999988
Q ss_pred hCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEe-CCCCccCCCCCcceEEEecccchhhhcCCch
Q 037622 346 AFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVD-WVNGCFLPPGSTGELWLRGPGTMKEYINNAD 424 (560)
Q Consensus 346 ~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d-~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~ 424 (560)
.+ +.++++.||+||++.+++..... ....++++|.|++++.+++++ .+++++++.|+.|||+++|++++.||+++|+
T Consensus 335 ~~-~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~ 412 (541)
T TIGR03205 335 KT-GLKLKSGWGMTETCSPGTGHPPE-GPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPE 412 (541)
T ss_pred Hh-CCCeecccccccCCcccccCCCC-CCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccCChh
Confidence 87 79999999999998876654322 123467899999999998865 3567889999999999999999999999999
Q ss_pred hhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEE
Q 037622 425 ATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVV 504 (560)
Q Consensus 425 ~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 504 (560)
.+.+.| .++||+|||+++++++|.+++.||.+|+||.+|++|++.+||+++.+++.|.+++|++.+++..++.++++++
T Consensus 413 ~~~~~~-~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 491 (541)
T TIGR03205 413 ESAEAF-VGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVK 491 (541)
T ss_pred hhHhhh-ccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEE
Confidence 998888 4789999999999999999999999999999999999999999999999999999999998888888999998
Q ss_pred ecCCC-CCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHH
Q 037622 505 RRDGS-TLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553 (560)
Q Consensus 505 ~~~~~-~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~ 553 (560)
+.++. ..+.+++.++++++|+++++|+.++++++||+|++||++|++|+
T Consensus 492 ~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 492 LRPGAKPFSLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred ECCCCCcCCHHHHHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence 87653 35778999999999999999999999999999999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-66 Score=647.77 Aligned_cols=485 Identities=22% Similarity=0.286 Sum_probs=416.4
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.+++++|.++++ ++++|++++ ++++||+||+++++++|..|.+ .|+++|++|+|+++|++++++++|||+++|++
T Consensus 2003 ~~~~~~~~~~a~~~p~~~A~~~~--~~~lTy~eL~~~a~~lA~~L~~-~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~ 2079 (5163)
T PRK12316 2003 PGVHQRIAEQAARAPEAIAVVFG--DQHLSYAELDSRANRLAHRLRA-RGVGPEVRVAIAAERSFELVVALLAVLKAGGA 2079 (5163)
T ss_pred CCHHHHHHHHHHhCCCCeEEEcC--CCeEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHhhceE
Confidence 589999887764 669999987 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVI 199 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (560)
++|++|.++.+++.++++.+++ +++++++.....+........+.++.. . ..............
T Consensus 2080 ~vpld~~~p~~rl~~il~~~~~--~~vl~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~ 2143 (5163)
T PRK12316 2080 YVPLDPNYPAERLAYMLEDSGA--ALLLTQRHLLERLPLPAGVARLPLDRD-------------A-EWADYPDTAPAVQL 2143 (5163)
T ss_pred EeecCCCCCHHHHHHHHHhcCC--CEEEeChhhhhhcccccccceEeccch-------------h-hhhccCccCCCCCC
Confidence 9999999999999999999999 999988766554432221222222210 0 00111111122345
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.++++++|+|||||||.||||+++|+++.+.+..... .+.++++|+++.+.|++|..++ ..++.+|..|+++++
T Consensus 2144 ~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~-----~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~~~~ 2217 (5163)
T PRK12316 2144 AGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGE-----RYELSPADCELQFMSFSFDGAH-EQWFHPLLNGARVLI 2217 (5163)
T ss_pred CCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHH-----hcCCCCcceEEEecCchHHHHH-HHHHHHHhCCCEEEe
Confidence 7899999999999999999999999999998887766 5678899999999999999887 489999999999987
Q ss_pred eCC--cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccc
Q 037622 280 MRR--FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYG 357 (560)
Q Consensus 280 ~~~--~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG 357 (560)
.+. +++..+++.++++++|++.++|++++.+.+. ... .....+||.+++|||++++++.++|.+.+++.+++|.||
T Consensus 2218 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~-~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 2295 (5163)
T PRK12316 2218 RDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEH-AER-DGRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYG 2295 (5163)
T ss_pred CCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhh-hhc-ccCCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECcc
Confidence 763 6899999999999999999999999999865 221 223358999999999999999999999888899999999
Q ss_pred hhhcccccccCCCCCCC---CcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccC---
Q 037622 358 MTESTAVGTRGFNTKKF---SKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID--- 431 (560)
Q Consensus 358 ~tE~~~~~~~~~~~~~~---~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--- 431 (560)
+||++..++........ ....++|+|+++++++|+| +++++++.|+.|||+|+|+++++||+++|+.|.+.|.
T Consensus 2296 ~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~ 2374 (5163)
T PRK12316 2296 PTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILD-ADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDP 2374 (5163)
T ss_pred chhheeeeeeeecccccccCCCcCCcccccCCCEEEEEC-CCCCCCCCCCeeEEEecchhhcccccCChhhhhhhccCCC
Confidence 99998776543322211 1235899999999999999 6789999999999999999999999999999999883
Q ss_pred ----CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecC
Q 037622 432 ----KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD 507 (560)
Q Consensus 432 ----~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 507 (560)
+++||+|||+|++++||.++++||+||+||++|++|++.|||.+|.++|+|.+++|++.++. .++.++++|++.+
T Consensus 2375 ~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~-~~~~l~a~v~~~~ 2453 (5163)
T PRK12316 2375 FSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA-SGKQLVAYVVPDD 2453 (5163)
T ss_pred CCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC-CCeEEEEEEEecC
Confidence 34699999999999999999999999999999999999999999999999999999988765 6788999999888
Q ss_pred CCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 508 GSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 508 ~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
+.....++++++++++||.|++|..++++++||+|++|||+|++|++.
T Consensus 2454 ~~~~~~~~l~~~l~~~Lp~~~vP~~~~~l~~lP~t~~GKidR~~L~~~ 2501 (5163)
T PRK12316 2454 AAEDLLAELRAWLAARLPAYMVPAHWVVLERLPLNPNGKLDRKALPKP 2501 (5163)
T ss_pred CCccCHHHHHHHHHhhCchhcCcceEeeecccCCCCCCccCHhhcCCC
Confidence 777788999999999999999999999999999999999999999764
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-65 Score=550.81 Aligned_cols=494 Identities=22% Similarity=0.272 Sum_probs=391.3
Q ss_pred CCCHHHHHhccC--CCCceEEEECC-C--CceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 037622 41 LLDVDSFIFSHK--HNGRTALVDSL-S--GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115 (560)
Q Consensus 41 ~~~~~~~~~~~~--~~~~~a~~~~~-~--~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 115 (560)
..|+.+++.+.+ +++++|+++.. . .+++||+||.++++++|++|.+ .|+++||+|+|+++|++++++++|||++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-~Gv~~gd~Vai~~~n~~e~~~~~lA~~~ 116 (614)
T PRK08180 38 PRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLD-RGLSAERPLMILSGNSIEHALLALAAMY 116 (614)
T ss_pred CccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecCCCHHHHHHHHHHHH
Confidence 368888887766 45689988641 1 2689999999999999999999 7999999999999999999999999999
Q ss_pred hCCeEeccCCCCC-----HHHHHHHHHhcCCceEEEEeeccc--hHHhhhcC--CCCEEEecCCCcccccCCCcccHHHh
Q 037622 116 LGAIVIPMNPLLS-----VSEIKKQVTLCKTKISLAFTIYEN--VDKLRSWG--TTPVVAVPENLVNDFKEGRFSDFHKL 186 (560)
Q Consensus 116 ~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~~~v~~~~~~--~~~~~~~~--~~~vi~~~~~~~~~~~~~~~~~~~~~ 186 (560)
+|++++|++|.++ .+++.++++.+++ +++++++.. ...+.... ...++...... .......+.++
T Consensus 117 ~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~ 190 (614)
T PRK08180 117 AGVPYAPVSPAYSLVSQDFGKLRHVLELLTP--GLVFADDGAAFARALAAVVPADVEVVAVRGAV----PGRAATPFAAL 190 (614)
T ss_pred cCCeEeeeccccccccCCHHHHHHHHhcCCC--cEEEEcCHHHHHHHHhhhccCCceEEEecCCC----CCcccccHHHH
Confidence 9999999999998 7999999999999 888887532 12221111 12233322211 01112345554
Q ss_pred hcccCCC---CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccC--CCCcEEEEecChhhHH
Q 037622 187 IAGKFDL---VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYL--SSEAVFLAVLPMFHIY 261 (560)
Q Consensus 187 ~~~~~~~---~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~ 261 (560)
....... .......++++++|+|||||||.||||++||+++..++..... .... ...+++++++|++|.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~~~~~~l~~lPl~h~~ 265 (614)
T PRK08180 191 LATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQ-----TFPFLAEEPPVLVDWLPWNHTF 265 (614)
T ss_pred hccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHh-----hccccCCCCcEEEEecchHHHh
Confidence 4432111 1112346789999999999999999999999999988776654 2223 2568999999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCC-cC---HHHHHHHHHHhCcceeccCcHHHHHHHHhhhc---cCCCCCCccceeecccCC
Q 037622 262 GLSLFALGLLSLGPSVVVMRR-FE---ASEMLKVIDKYGVTHFPVVPPILMALTKAAKG---LCGNSLKSLKQVSSGAAP 334 (560)
Q Consensus 262 g~~~~~~~~l~~G~~~v~~~~-~~---~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~---~~~~~l~~lr~~~~~g~~ 334 (560)
++...++.++..|+++++.+. ++ ...+++.++++++|+++++|+++..|++.... .....++++|.+++||++
T Consensus 266 g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~ 345 (614)
T PRK08180 266 GGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAA 345 (614)
T ss_pred hHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCC
Confidence 987788889999999998763 33 35678889999999999999999998764211 122356899999999999
Q ss_pred CCHHHHHHHHHh----C-CCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEE
Q 037622 335 ANSKIIEDFVGA----F-PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELW 409 (560)
Q Consensus 335 ~~~~~~~~~~~~----~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~ 409 (560)
+++++.+.+.+. + .++++++.||+||++.+++..... ...++++|+|+||++++++|+ |..|||+
T Consensus 346 l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~d~--------~~~GEi~ 415 (614)
T PRK08180 346 LSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGP--LSRAGNIGLPAPGCEVKLVPV--------GGKLEVR 415 (614)
T ss_pred CCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccc--cCCCCcccCccCCcEEEEecC--------CCCcEEE
Confidence 999999999875 3 137899999999998766543222 245789999999999999983 3469999
Q ss_pred EecccchhhhcCCchhhhhccCCCCceecCceEEE----ccCCcEEEEccccceeee-cceecC--hHHHHHHHhcCCCc
Q 037622 410 LRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYF----DEDGYLYIVDRLKEVIKY-NGYQIS--PADLETVLICHPEI 482 (560)
Q Consensus 410 v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~----~~~g~l~~~GR~~d~i~~-~G~~v~--~~~IE~~l~~~~~v 482 (560)
++|++++.||+++|+.|.+.|+.+|||+|||+|++ |++|+++++||++|+|++ +|++|+ +.|+|.++.+||.|
T Consensus 416 vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V 495 (614)
T PRK08180 416 VKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLV 495 (614)
T ss_pred EecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchh
Confidence 99999999999999999999988999999999999 468999999999999986 798776 78888999999999
Q ss_pred ccEEEEcccCCCCCceEEEEEEecCCC---------------CCCHHHHHHHHHhccCCCC--------CcceEEEecCC
Q 037622 483 LDVAVTGAMDKVLGEIPVAFVVRRDGS---------------TLTEAAVIDYLAQRVAPYK--------KVRRVVFTKSI 539 (560)
Q Consensus 483 ~~~~v~~~~~~~~~~~~~~~v~~~~~~---------------~~~~~~l~~~~~~~l~~~~--------~p~~i~~~~~l 539 (560)
.+++|++.+++. +.++|++.++. ..+.++++++++++|..++ +|+++++++++
T Consensus 496 ~~a~V~g~~~~~----~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~ 571 (614)
T PRK08180 496 QDVVITGHDRDE----IGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEP 571 (614)
T ss_pred heEEEEcCCCCc----eEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCC
Confidence 999999998764 67888775431 1244678888888887776 89999999999
Q ss_pred CCCC------CCcchHHHHHHHHhccC
Q 037622 540 PKSA------AGKVLRRELRKFLTSKL 560 (560)
Q Consensus 540 P~t~------~GKi~r~~L~~~~~~~~ 560 (560)
|+++ +||+.|+++.+.|+++|
T Consensus 572 p~~~~gk~t~~~~~~R~~~~~~y~~~i 598 (614)
T PRK08180 572 PSLDAGEITDKGYINQRAVLARRAALV 598 (614)
T ss_pred CCCccCccCccccccHHHHHHHhHHHH
Confidence 8764 56889999999988764
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-65 Score=552.23 Aligned_cols=507 Identities=23% Similarity=0.306 Sum_probs=389.7
Q ss_pred CCCCHHHHHhccCC--CCceEEEEC----------CCC-----------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEE
Q 037622 40 SLLDVDSFIFSHKH--NGRTALVDS----------LSG-----------YSISYPQLFPLVQSVASGLRHHFGISQGDAV 96 (560)
Q Consensus 40 ~~~~~~~~~~~~~~--~~~~a~~~~----------~~~-----------~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V 96 (560)
...|+.++|.+.++ ++++|+... ..+ ..+||+||.++++++|.+|.+ +|+++||+|
T Consensus 56 ~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-lG~~~gd~V 134 (696)
T PLN02387 56 GATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVA-LGHNKEERV 134 (696)
T ss_pred CCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHH-hCCCCCCEE
Confidence 34689999888775 558888321 012 238999999999999999999 899999999
Q ss_pred EEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC-----CCEEEecCCC
Q 037622 97 LLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-----TPVVAVPENL 171 (560)
Q Consensus 97 ~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~~~~~~ 171 (560)
+|+++|+++|+++++||+++|++++|+++.++.+++.++++.+++ ++++++.+....+..... ..++.+++..
T Consensus 135 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~--~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~ 212 (696)
T PLN02387 135 AIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEV--TTVICDSKQLKKLIDISSQLETVKRVIYMDDEG 212 (696)
T ss_pred EEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCC--CEEEECHHHHHHHHHHhhccCCceEEEEECCCC
Confidence 999999999999999999999999999999999999999999999 999998776665544321 3455554321
Q ss_pred cccc------cCCCcccHHHhhcccCC-CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhccccc
Q 037622 172 VNDF------KEGRFSDFHKLIAGKFD-LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY 244 (560)
Q Consensus 172 ~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~ 244 (560)
.... .......+.++...... ........++|+++|+|||||||.||||++||+++..++...... ...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~----~~~ 288 (696)
T PLN02387 213 VDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTV----VPK 288 (696)
T ss_pred chhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhh----cCC
Confidence 1000 00112344544433211 112223467999999999999999999999999999887766541 235
Q ss_pred CCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcC--------HHHHHHHHHHhCcceeccCcHHHHHHHHhhhc
Q 037622 245 LSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFE--------ASEMLKVIDKYGVTHFPVVPPILMALTKAAKG 316 (560)
Q Consensus 245 ~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~--------~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~ 316 (560)
+.++|++++++|++|++++. .....+..|+++.+..... +..++..+++++||++.++|.++..+.+....
T Consensus 289 ~~~~d~~l~~lPl~Hi~~~~-~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~ 367 (696)
T PLN02387 289 LGKNDVYLAYLPLAHILELA-AESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRK 367 (696)
T ss_pred CCCCCEEEEECcHHHHHHHH-HHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHH
Confidence 77899999999999999986 3444567777776644321 23456789999999999999999998653110
Q ss_pred c-----------------------CCC----------------------CC-CccceeecccCCCCHHHHHHHHHhCCCC
Q 037622 317 L-----------------------CGN----------------------SL-KSLKQVSSGAAPANSKIIEDFVGAFPHV 350 (560)
Q Consensus 317 ~-----------------------~~~----------------------~l-~~lr~~~~~g~~~~~~~~~~~~~~~~~~ 350 (560)
. ... .+ +++|.+++||+++++++.+.+...+ ++
T Consensus 368 ~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~-g~ 446 (696)
T PLN02387 368 KVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICL-GA 446 (696)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHc-CC
Confidence 0 000 01 5899999999999999988888777 89
Q ss_pred eeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCC-CccC--CCCCcceEEEecccchhhhcCCchhhh
Q 037622 351 DFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVN-GCFL--PPGSTGELWLRGPGTMKEYINNADATM 427 (560)
Q Consensus 351 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~-~~~~--~~g~~Gel~v~~~~~~~gy~~~~~~~~ 427 (560)
++++.||+||+++.++..... ....+++|.|+|+++++++|.++ +..+ .++..|||+|+||+++.||+++|+.|.
T Consensus 447 ~v~~~YG~TEt~~~~~~~~~~--~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~ 524 (696)
T PLN02387 447 PIGQGYGLTETCAGATFSEWD--DTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTD 524 (696)
T ss_pred CeeEeechhhcccceeecCcc--cCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHh
Confidence 999999999998776654332 34578999999999999999443 3332 334579999999999999999999999
Q ss_pred hcc--CCCC--ceecCceEEEccCCcEEEEccccceeee-cceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEE
Q 037622 428 STI--DKEG--WLHTGDIAYFDEDGYLYIVDRLKEVIKY-NGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAF 502 (560)
Q Consensus 428 ~~~--~~~~--~~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~ 502 (560)
+.| +.+| ||+|||+|++|+||+++++||++|+||+ +|++|+|.+||++|.++|.|.+++|++.+... .++++
T Consensus 525 ~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~~---~~~a~ 601 (696)
T PLN02387 525 EVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHS---YCVAL 601 (696)
T ss_pred hhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCcc---eEEEE
Confidence 988 3345 9999999999999999999999999998 69999999999999999999999999876332 37888
Q ss_pred EEecCCC----------C-CC----------HHHHHHHH-----HhccCCCCCcceEEEecCCC------CCCCCcchHH
Q 037622 503 VVRRDGS----------T-LT----------EAAVIDYL-----AQRVAPYKKVRRVVFTKSIP------KSAAGKVLRR 550 (560)
Q Consensus 503 v~~~~~~----------~-~~----------~~~l~~~~-----~~~l~~~~~p~~i~~~~~lP------~t~~GKi~r~ 550 (560)
|++.... . .+ .+++.+.+ +++|..+.+|++|.++.+-. +|++.|+.|+
T Consensus 602 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~ 681 (696)
T PLN02387 602 VVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKRE 681 (696)
T ss_pred EEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhH
Confidence 8874311 0 01 12222222 34689999999999987643 7889999999
Q ss_pred HHHHHHhccC
Q 037622 551 ELRKFLTSKL 560 (560)
Q Consensus 551 ~L~~~~~~~~ 560 (560)
.+++.|+++|
T Consensus 682 ~i~~~y~~~i 691 (696)
T PLN02387 682 QIRKKFKDDL 691 (696)
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-65 Score=525.53 Aligned_cols=430 Identities=21% Similarity=0.317 Sum_probs=360.4
Q ss_pred eecHHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEE
Q 037622 67 SISYPQLFPLVQSVASGLRHHFGI-SQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISL 145 (560)
Q Consensus 67 ~~Ty~el~~~v~~la~~L~~~~g~-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~ 145 (560)
-+.|+||.++++++|.+|.+ .|+ ++|++|+++++|+++++++++||+++|++++|++|.++.++++++++.+++ ++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~-~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~--~~ 95 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQ-LATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQP--DQ 95 (452)
T ss_pred ecChHHHHHHHHHHHHHHHH-hcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCC--CE
Confidence 45899999999999999999 788 579999999999999999999999999999999999999999999999999 88
Q ss_pred EEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhH
Q 037622 146 AFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHG 225 (560)
Q Consensus 146 v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~ 225 (560)
++++....... ... . . .......++++++++|||||||.||+|++||.
T Consensus 96 ~i~~~~~~~~~----------~~~----------------~-~-----~~~~~~~~~~~~~i~~TSGTTG~PKgV~~t~~ 143 (452)
T PRK07445 96 IWGLDQLKLSH----------PPP----------------L-P-----SQGILPNLETGWIMIPTGGSSGQIRFAIHTWE 143 (452)
T ss_pred EEecCcccccc----------CCC----------------C-C-----ccccCCCCCCcEEEEeCCCCCCCCcEEEechH
Confidence 87765421100 000 0 0 00112356899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcH
Q 037622 226 NFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPP 305 (560)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~ 305 (560)
++...+..... ...+.+ ++.++++|++|.+|+. .++.++..|+++++.+............+++++++.++|+
T Consensus 144 ~l~~~~~~~~~-----~~~~~~-~~~~~~~Pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~ 216 (452)
T PRK07445 144 TLTASVQGFQR-----YFQLQQ-VNSFCVLPLYHVSGLM-QFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPT 216 (452)
T ss_pred HHHHHHHHHHH-----HhcCCC-CceEeccCchhhhhHH-HHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHH
Confidence 99887776654 233443 4678899999999984 7788999999999887432222233445788999999999
Q ss_pred HHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccC
Q 037622 306 ILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAP 385 (560)
Q Consensus 306 ~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p 385 (560)
+++.+.+. ....++++|.+++||+++++++.+++.+ + ++++++.||+||++..++............++|+|+|
T Consensus 217 ~l~~l~~~----~~~~l~~l~~i~~gG~~l~~~~~~~~~~-~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p 290 (452)
T PRK07445 217 QLQRLLQL----RPQWLAQFRTILLGGAPAWPSLLEQARQ-L-QLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLP 290 (452)
T ss_pred HHHHHHhh----ChhhhhcceEEEECCccCCHHHHHHHHh-c-CCeEecCcchhhhcccccccCchhhccCCCcCCccCC
Confidence 99998763 1234789999999999999999998876 4 8999999999999865443322221224568999999
Q ss_pred CeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecce
Q 037622 386 NIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGY 465 (560)
Q Consensus 386 ~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~ 465 (560)
+++++++ .|+.|||+++|+.++.||++++. +.++||+|||+|++|+||++++.||.||+||.+|+
T Consensus 291 ~~~v~i~---------~g~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~ 355 (452)
T PRK07445 291 HAQITIP---------ANQTGNITIQAQSLALGYYPQIL------DSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGE 355 (452)
T ss_pred CCeEEEc---------CCCcceEEEeCCccchhhcCCcc------CCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCE
Confidence 9999987 36789999999999999998643 25789999999999999999999999999999999
Q ss_pred ecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCC
Q 037622 466 QISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAG 545 (560)
Q Consensus 466 ~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~G 545 (560)
+|+|.+||++|.++|+|.+++|++.+++..|+.++++++..++ ..+.++++++++++|++|++|+.++++++||+|++|
T Consensus 356 ~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~~G 434 (452)
T PRK07445 356 NVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-SISLEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQG 434 (452)
T ss_pred EECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC-CCCHHHHHHHHHHhCCcccCCeEEEEecCCCCCCCc
Confidence 9999999999999999999999999999889999999988765 466789999999999999999999999999999999
Q ss_pred cchHHHHHHHHhccC
Q 037622 546 KVLRRELRKFLTSKL 560 (560)
Q Consensus 546 Ki~r~~L~~~~~~~~ 560 (560)
|++|++|++.+.++|
T Consensus 435 Ki~r~~L~~~~~~~~ 449 (452)
T PRK07445 435 KINRQQLQQIAVQRL 449 (452)
T ss_pred ccCHHHHHHHHHHhh
Confidence 999999999998875
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-65 Score=534.27 Aligned_cols=478 Identities=25% Similarity=0.357 Sum_probs=399.0
Q ss_pred CCHHHHHhccC--CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHK--HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~--~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.+.+.+++ .++++|+++. ++.+||+||.++++++|.+|.+ .|+++||+|+++++|++++++++|||+++|++
T Consensus 35 ~~~~~~~~~~a~~~p~~~a~~~~--~~~lTy~el~~~~~~la~~L~~-~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v 111 (516)
T PRK13383 35 TNPYTLLAVTAARWPGRTAIIDD--DGALSYRELQRATESLARRLTR-DGVAPGRAVGVMCRNGRGFVTAVFAVGLLGAD 111 (516)
T ss_pred CcHHHHHHHHHHHCCCCcEEEeC--CCcEeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCCHHHHHHHHHHHHhCeE
Confidence 67888776654 4669999986 6799999999999999999998 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVI 199 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (560)
++|+++.++.+++.++++.+++ +.+++++.....+.... ..++.++... . ..... .....
T Consensus 112 ~vpl~~~~~~~~l~~~l~~~~~--~~ii~~~~~~~~~~~~~-~~~~~~~~~~-----------~-~~~~~-----~~~p~ 171 (516)
T PRK13383 112 VVPISTEFRSDALAAALRAHHI--STVVADNEFAERIAGAD-DAVAVIDPAT-----------A-GAEES-----GGRPA 171 (516)
T ss_pred EEEcCccCCHHHHHHHHhcCCC--CEEEEchhHHHHHHhhh-cceEEeccch-----------h-hhhcC-----CCCCC
Confidence 9999999999999999999999 99998877655544332 1222222110 0 00000 00111
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
..++.++++|||||||.||+|+++|...... ........ ...+..+++++..+|++|.+++. ..+.++..|+++++
T Consensus 172 ~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~-~~~~~~~~--~~~~~~~d~~~~~~pl~h~~g~~-~~~~~l~~G~~~~~ 247 (516)
T PRK13383 172 VAAPGRIVLLTSGTTGKPKGVPRAPQLRSAV-GVWVTILD--RTRLRTGSRISVAMPMFHGLGLG-MLMLTIALGGTVLT 247 (516)
T ss_pred CCCCCcEEEECCCCCCCCCeeeecchhhhhh-hhHHhHHh--hhccCCCCeEEEecCCcchhhHH-HHHHHHhcCCEEEE
Confidence 2356678999999999999999999743211 11111000 34577899999999999999985 67778999999999
Q ss_pred eCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccch
Q 037622 280 MRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGM 358 (560)
Q Consensus 280 ~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~ 358 (560)
...+++..+++.++++++|.+.++|+++..+.+.... .....++++|.+++||++++++++++|.+.| +..+++.||+
T Consensus 248 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~ 326 (516)
T PRK13383 248 HRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTY-GDILYNGYGS 326 (516)
T ss_pred CCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHc-Cchhhhcccc
Confidence 8889999999999999999999999999999764221 1234568899999999999999999999999 7899999999
Q ss_pred hhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceec
Q 037622 359 TESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHT 438 (560)
Q Consensus 359 tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~T 438 (560)
||++..+..... ......+++|+|+|+++++|+| +++++++.|+.|||+++|+.++.||++++... + .+|||+|
T Consensus 327 tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~~---~-~~g~~~T 400 (516)
T PRK13383 327 TEVGIGALATPA-DLRDAPETVGKPVAGCPVRILD-RNNRPVGPRVTGRIFVGGELAGTRYTDGGGKA---V-VDGMTST 400 (516)
T ss_pred cccccceecccc-ccccCCCcccCCCCCcEEEEEC-CCCCCCCCCCceEEEEecCcccccccCCchhh---e-ecCceec
Confidence 999876554332 2234567899999999999999 57889999999999999999999999876422 2 4799999
Q ss_pred CceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHH
Q 037622 439 GDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVID 518 (560)
Q Consensus 439 GD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 518 (560)
||+|++|++|++++.||.+|+||.+|++|++.+||++|.++|.|.++++++.++...++.+.++|+..++...+.+++++
T Consensus 401 GDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~ 480 (516)
T PRK13383 401 GDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRD 480 (516)
T ss_pred ceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999988776677889999
Q ss_pred HHHhccCCCCCcceEEEecCCCCCCCCcchHHHHH
Q 037622 519 YLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553 (560)
Q Consensus 519 ~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~ 553 (560)
++++++++++.|..++++++||+|++||++|++|+
T Consensus 481 ~~~~~l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 481 YLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred HHHHhcccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence 99999999999999999999999999999999985
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-65 Score=520.19 Aligned_cols=489 Identities=26% Similarity=0.373 Sum_probs=377.8
Q ss_pred CCCHHHHHhccCCCC--ceEEEECCC--CceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHh
Q 037622 41 LLDVDSFIFSHKHNG--RTALVDSLS--GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYL 116 (560)
Q Consensus 41 ~~~~~~~~~~~~~~~--~~a~~~~~~--~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~ 116 (560)
..++..++.++.... .+|+..... .+.+||+|+.+++.++|++|.. +|+++||+|+|++.|+++|+++.+||+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~-lg~~~gdrvai~a~nr~eW~i~d~a~~~~ 93 (613)
T COG1022 15 IHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLS-LGIPAGDRVAIFAANRPEWAIADLAILAL 93 (613)
T ss_pred cccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence 356777777777544 667775433 3799999999999999999999 89988999999999999999999999999
Q ss_pred CCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHh-hhcCC-CC-EEEec---C---CCcc--cccCCCcccHHH
Q 037622 117 GAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKL-RSWGT-TP-VVAVP---E---NLVN--DFKEGRFSDFHK 185 (560)
Q Consensus 117 G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~-~~~~~-~~-vi~~~---~---~~~~--~~~~~~~~~~~~ 185 (560)
|++.||+.++.+.++++++|+++++ ++++++....... ..... .+ +.... + .... ....+.......
T Consensus 94 g~v~Vp~y~t~~~~~~~~iL~~se~--~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (613)
T COG1022 94 GAVSVPIYSTSTPEQLAYILNESES--KVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGI 171 (613)
T ss_pred CCeEEecCCCCCHHHHHHHHhcCCc--eEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccc
Confidence 9999999999999999999999999 9999988654333 22221 00 00000 0 0000 000000000000
Q ss_pred ---hhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhccccc-CCCCcEEEEecChhhHH
Q 037622 186 ---LIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY-LSSEAVFLAVLPMFHIY 261 (560)
Q Consensus 186 ---~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~ 261 (560)
...............++|+|.|+|||||||.||||++||+|+++++....+ ... .+++|+.++++|++|++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~-----~~~~~~~~d~~LsfLPlaHi~ 246 (613)
T COG1022 172 SLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDE-----VLPPIGPGDRVLSFLPLAHIF 246 (613)
T ss_pred hhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHh-----hCCCCCCCcEEEEeCcHHHHH
Confidence 011111111224567899999999999999999999999999999999887 454 88999999999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhh----------------------c---
Q 037622 262 GLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAK----------------------G--- 316 (560)
Q Consensus 262 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~----------------------~--- 316 (560)
...+.....+..|.+..+ ..++..+++.+++++||++.++|.+|+.+-+... .
T Consensus 247 Er~~~~~~~~~~g~~~~~--~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~ 324 (613)
T COG1022 247 ERAFEGGLALYGGVTVLF--KEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKIS 324 (613)
T ss_pred HHHHHHHHHhhcceEEEe--cCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 996544444444444444 4579999999999999999999999988654310 0
Q ss_pred -----------------------cCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCC
Q 037622 317 -----------------------LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKK 373 (560)
Q Consensus 317 -----------------------~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~ 373 (560)
..... .++|.+++||+++++++...++.. ++++.++||+||+++.++.++..
T Consensus 325 ~~~~~~~~~~~~~~~d~LVf~Kir~~lG-gri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v~~~~-- 399 (613)
T COG1022 325 RALLGGGPLSWLLVADRLVFRKIRDALG-GRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSVNPPD-- 399 (613)
T ss_pred hhhcccCCcchhhhhhHHHHHHHHHHhC-CcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEEcccc--
Confidence 00111 488999999999999999999988 89999999999999998877543
Q ss_pred CCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEE
Q 037622 374 FSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIV 453 (560)
Q Consensus 374 ~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~ 453 (560)
....+++|.|+|+++++|+| .|||+|+||++|+|||++|++|++.|+.+|||+|||+|.+|++|+|+++
T Consensus 400 ~~~~gtvG~p~p~~evKI~d-----------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~ 468 (613)
T COG1022 400 RFVLGTVGKPLPGIEVKIAD-----------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVIT 468 (613)
T ss_pred CcccCCcCCcCCCceEEEcc-----------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEe
Confidence 46789999999999999998 2999999999999999999999999999999999999999999999999
Q ss_pred ccccceeee-cceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCC----------C--CCH------H
Q 037622 454 DRLKEVIKY-NGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS----------T--LTE------A 514 (560)
Q Consensus 454 GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------~--~~~------~ 514 (560)
||++|+|++ +|++|.|+.||+.+.++|.|.+++|++.... .+.|.|++..+. . .+. .
T Consensus 469 gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg~~k~----~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~ 544 (613)
T COG1022 469 GRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKK----FLVALIVPDFDALEKWAESLNKVISASREELARDP 544 (613)
T ss_pred ecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEecCCc----ceEEEEeCCHHHHHHHHHhccccccCCHHHHhhCH
Confidence 999999999 9999999999999999999999999993333 378888874321 0 111 1
Q ss_pred HHHHHH-------HhccCCCCCcceEEEe-cCCC-----CCCCCcchHHHHHHHHhcc
Q 037622 515 AVIDYL-------AQRVAPYKKVRRVVFT-KSIP-----KSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 515 ~l~~~~-------~~~l~~~~~p~~i~~~-~~lP-----~t~~GKi~r~~L~~~~~~~ 559 (560)
++++.+ ...+..+..++.++.. +++. .|++-|+.|....+.++.+
T Consensus 545 ~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~ 602 (613)
T COG1022 545 KLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDE 602 (613)
T ss_pred HHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhH
Confidence 222221 2223445566665555 3443 7889999999999888765
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=530.63 Aligned_cols=481 Identities=27% Similarity=0.416 Sum_probs=407.6
Q ss_pred CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHH
Q 037622 53 HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEI 132 (560)
Q Consensus 53 ~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l 132 (560)
+++++|+++. +..+||.||.++++++|++|.+ +|+++|++|+++++|+.+++++++||+++|++++|+++.++.+++
T Consensus 18 ~p~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~-~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l 94 (508)
T TIGR02262 18 RGGKTAFIDD--ISSLSYGELEAQVRRLGAALRR-LGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDY 94 (508)
T ss_pred cCCceEEEeC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeeccCCCCHHHH
Confidence 5679999986 7899999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEEeeccchHHhhhcCC-----CCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCCCCCCEEEE
Q 037622 133 KKQVTLCKTKISLAFTIYENVDKLRSWGT-----TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAI 207 (560)
Q Consensus 133 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 207 (560)
.++++.+++ ++++++....+.+..... ..++..+.. ......+.+...............+++++++
T Consensus 95 ~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 166 (508)
T TIGR02262 95 AYMLEDSRA--RVVFVSGELLPVIKAALGKSPHLEHRVVVGRP------EAGEVQLAELLATESEQFKPAATQADDPAFW 166 (508)
T ss_pred HHHHHhcCC--eEEEEchhhHHHHHHHHhcCCCccEEEEeCCC------CcccccHHHHhhcCCCccCCCCCCCCCcEEE
Confidence 999999999 999988776555433211 222332221 1111233333332222222334567899999
Q ss_pred EcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC-cCHH
Q 037622 208 LYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR-FEAS 286 (560)
Q Consensus 208 ~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~ 286 (560)
+|||||||.||+|+++|+++...+...... ...++.+|+++...|++|..++...++.++..|+++++.++ +++.
T Consensus 167 ~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~ 242 (508)
T TIGR02262 167 LYSSGSTGMPKGVVHTHSNPYWTAELYARN----TLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPD 242 (508)
T ss_pred EeCCCCCCCCcEEEEechhHHHHHHHHhHH----hcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHH
Confidence 999999999999999999998776653221 35678899999999999999997778888999999988764 6899
Q ss_pred HHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccc
Q 037622 287 EMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGT 366 (560)
Q Consensus 287 ~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 366 (560)
.+++.++++++|.+.++|+++..+... .........++|.+++||+++++++.+.|.+.| ++++++.||+||++.+++
T Consensus 243 ~~~~~i~~~~~t~~~~~P~~~~~~~~~-~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~ 320 (508)
T TIGR02262 243 AVFDRLRRHQPTIFYGVPTLYAAMLAD-PNLPAEDQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIGSTEMLHIFL 320 (508)
T ss_pred HHHHHHHHHCCcEEecchHHHHHHhcC-ccccccccccceeEEEcCCCCCHHHHHHHHHHh-CCchhhCccccccCceee
Confidence 999999999999999999999888754 222334467899999999999999999999998 889999999999997665
Q ss_pred cCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEcc
Q 037622 367 RGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDE 446 (560)
Q Consensus 367 ~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~ 446 (560)
.+... ..+.+++|+|++++.++++| +++.+++.|+.|||+++|+.++.||+++++.+...+ .++||+|||++++++
T Consensus 321 ~~~~~--~~~~~~~G~~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~ 396 (508)
T TIGR02262 321 SNLPG--DVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRND 396 (508)
T ss_pred cCCcc--CCCCCCcCCCCCCcEEEEEC-CCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcC
Confidence 44322 23567899999999999999 789999999999999999999999999999998888 578999999999999
Q ss_pred CCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCC---CCCHHHHHHHHHhc
Q 037622 447 DGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS---TLTEAAVIDYLAQR 523 (560)
Q Consensus 447 ~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~~~ 523 (560)
+|.+++.||.+|+|+.+|.+|++.+||+++.++++|.++++++.++...++.+.+++++.++. ....++++++++++
T Consensus 397 ~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~ 476 (508)
T TIGR02262 397 DGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDR 476 (508)
T ss_pred CccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988877777888888876543 23467899999999
Q ss_pred cCCCCCcceEEEecCCCCCCCCcchHHHHHH
Q 037622 524 VAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554 (560)
Q Consensus 524 l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~ 554 (560)
|++++.|..+++++++|+|++||++|++|++
T Consensus 477 l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~ 507 (508)
T TIGR02262 477 LAPYKYPRWIVFVDDLPKTATGKIQRFKLRE 507 (508)
T ss_pred cccCCCCceEEEecCCCCCCCCcEehhhccC
Confidence 9999999999999999999999999999875
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-65 Score=631.77 Aligned_cols=486 Identities=22% Similarity=0.280 Sum_probs=413.4
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.+++++|.++++ ++++|++++ ++++||+||.++++++|+.|.+ .|+++|++|+|+++|++++++++|||+++|++
T Consensus 512 ~~~~~~~~~~a~~~pd~~Al~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vv~~lail~aG~~ 588 (3956)
T PRK12467 512 DCVHQLIEAQARQHPERPALVFG--EQVLSYAELNRQANRLAHVLIA-AGVGPDVLVGIAVERSIEMVVGLLAVLKAGGA 588 (3956)
T ss_pred CCHHHHHHHHHHHCCCCeEEEeC--CceEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHhCcE
Confidence 689999988775 569999987 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVI 199 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (560)
++|++|.++.+++.++++.+++ +++++++.....+.......++.++... ...............
T Consensus 589 ~vpld~~~p~~rl~~il~~~~~--~~vl~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 653 (3956)
T PRK12467 589 YVPLDPEYPQDRLAYMLDDSGV--RLLLTQSHLLAQLPVPAGLRSLCLDEPA-------------DLLCGYSGHNPEVAL 653 (3956)
T ss_pred EeccCCCChHHHHHHHHHhcCC--CEEEechhhhhhcccccCccEEEecccc-------------ccccccCCCCCCCCC
Confidence 9999999999999999999999 9999887554433222222333332210 000111111122345
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.++++++|+|||||||.||||+++|+++.+.+..... .+.+.++++++.+.|++|..+.. .++.++..|+++++
T Consensus 654 ~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~~~~~fd~~~~-~~~~~L~~G~~lv~ 727 (3956)
T PRK12467 654 DPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAE-----RLQLAADDSMLMVSTFAFDLGVT-ELFGALASGATLHL 727 (3956)
T ss_pred CCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHH-----hcCCCCCCEEEEecCccHhHHHH-HHHHHHhCCCEEEE
Confidence 6899999999999999999999999999998887766 56788999999999999999984 88999999999999
Q ss_pred eCC---cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeeccc
Q 037622 280 MRR---FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGY 356 (560)
Q Consensus 280 ~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~Y 356 (560)
.+. +++..+++.++++++|++.++|+++..+.+.. ......++|.+++|||++++++.+.|.+.+|+++++|.|
T Consensus 728 ~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 804 (3956)
T PRK12467 728 LPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQAS---RVALPRPQRALVCGGEALQVDLLARVRALGPGARLINHY 804 (3956)
T ss_pred cCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhh---ccccCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCc
Confidence 874 68999999999999999999999999998642 123356789999999999999999999988889999999
Q ss_pred chhhcccccccCCCCCCC--CcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccC---
Q 037622 357 GMTESTAVGTRGFNTKKF--SKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID--- 431 (560)
Q Consensus 357 G~tE~~~~~~~~~~~~~~--~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--- 431 (560)
|+||++..++........ ....++|+|+++++++|+| +++++++.|+.|||+|+|+++++||+++|+.|.+.|.
T Consensus 805 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p 883 (3956)
T PRK12467 805 GPTETTVGVSTYELSDEERDFGNVPIGQPLANLGLYILD-HYLNPVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDP 883 (3956)
T ss_pred CCChhhhheeeEecccccccCCCCcccCCcCCCEEEEEC-CCCCCCCCCCceEEEecccccchhhcCCccccHhhCcCCC
Confidence 999999876654332221 1236799999999999999 6789999999999999999999999999999998873
Q ss_pred ----CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecC
Q 037622 432 ----KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD 507 (560)
Q Consensus 432 ----~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 507 (560)
+++||+|||+|++++||.++++||+||+||++|++|++.|||+.|.++|+|.+++|++.++. .++.+++++++..
T Consensus 884 ~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~vki~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~-~~~~lva~vv~~~ 962 (3956)
T PRK12467 884 FGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQPGD-AGLQLVAYLVPAA 962 (3956)
T ss_pred CCCCCceeEecCceeEEcCCCcEEEeccccCeEEECCEecCHHHHHHHHHhCCCcceEEEEEEcCC-CCcEEEEEEEecc
Confidence 33599999999999999999999999999999999999999999999999999999986543 4667899988543
Q ss_pred C-----CCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHH
Q 037622 508 G-----STLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFL 556 (560)
Q Consensus 508 ~-----~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~ 556 (560)
. .....+++++++++.||.|++|..++++++||+|++||+||++|++..
T Consensus 963 ~~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~ 1016 (3956)
T PRK12467 963 VADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDSLPLTPNGKLDRKALPKPD 1016 (3956)
T ss_pred cccccccccCHHHHHHHHHhhCchhcCCceEeeecccCCCCCCCcCHhhcCCcc
Confidence 2 234568899999999999999999999999999999999999998653
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-64 Score=527.38 Aligned_cols=487 Identities=21% Similarity=0.299 Sum_probs=405.6
Q ss_pred CCHHHHHhccC--CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHK--HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~--~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
+|+.+.+.+.+ .++++|+++. ++.+||+||.++++++|..|.+ .|+++|++|+++++|+.+++++++||+++|++
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~--~~~~t~~~l~~~~~~~a~~l~~-~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~ 78 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYL--GEKLTYGQLKEDSDALAAFIDS-LKLPDKSPIIVFGHMSPEMLATFLGAVKAGHA 78 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeC--CcEEeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 45667665554 4568898886 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVI 199 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (560)
++|+++.++.+++.++++.+++ +++++++.... .......+..+ ++.+..............
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 140 (503)
T PRK04813 79 YIPVDVSSPAERIEMIIEVAKP--SLIIATEELPL---EILGIPVITLD-------------ELKDIFATGNPYDFDHAV 140 (503)
T ss_pred EecCCCCChHHHHHHHHHhcCC--CEEEecccccc---cccCCcEEehH-------------HhhhhhhccccccccccC
Confidence 9999999999999999999999 88888765410 00001111111 111111101111112334
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.++++++++|||||||.||+|.++|.++......... ...+..+++++...|++|..+. ..++.++..|+++++
T Consensus 141 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~v~ 214 (503)
T PRK04813 141 KGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLE-----DFALPEGPQFLNQAPYSFDLSV-MDLYPTLASGGTLVA 214 (503)
T ss_pred CCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHH-----HcCCCcCceeeecCCcchhHhH-HHHHHHHhcCCEEEE
Confidence 6788999999999999999999999999987776665 4567889999999999999887 477789999999998
Q ss_pred eCC---cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeeccc
Q 037622 280 MRR---FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGY 356 (560)
Q Consensus 280 ~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~Y 356 (560)
.+. .++..+++.++++++|++..+|++++.+... .......++++|.++++|+++++.+.+++.+.|+++.+++.|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~-~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~y 293 (503)
T PRK04813 215 LPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLD-PSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTY 293 (503)
T ss_pred cChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHh-hccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCc
Confidence 875 5789999999999999999999999887654 333455678999999999999999999999999889999999
Q ss_pred chhhcccccccCCCCC---CCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhcc---
Q 037622 357 GMTESTAVGTRGFNTK---KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI--- 430 (560)
Q Consensus 357 G~tE~~~~~~~~~~~~---~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~--- 430 (560)
|+||++..++...... ......++|.+.++++++|+| +++.+++.|+.|||+++|+.++.||+++++.+...|
T Consensus 294 G~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 372 (503)
T PRK04813 294 GPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTF 372 (503)
T ss_pred ccchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-CCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccC
Confidence 9999986554322211 123456799999999999999 678999999999999999999999999999998776
Q ss_pred CCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCC
Q 037622 431 DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGST 510 (560)
Q Consensus 431 ~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 510 (560)
++.+||+|||++++ .+|.+++.||.+|+|+.+|++|++.+||+.+.++|+|.+++|++.++...++.+++++++.++..
T Consensus 373 ~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 451 (503)
T PRK04813 373 DGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDF 451 (503)
T ss_pred CCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccc
Confidence 23459999999999 99999999999999999999999999999999999999999999877767788899888765421
Q ss_pred C----CHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 511 L----TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 511 ~----~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
. ..++++++++++++.+++|+.+++++++|+|++||++|++|++++.+
T Consensus 452 ~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 503 (503)
T PRK04813 452 EREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVNK 503 (503)
T ss_pred cccchhHHHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhcC
Confidence 1 12568999999999999999999999999999999999999998864
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=531.00 Aligned_cols=502 Identities=24% Similarity=0.331 Sum_probs=398.8
Q ss_pred CCHHHHHhccC--CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHK--HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~--~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+...+...+ .++++|++++ ++.+||+||+++++++|.+|.+ .|+++||+|+++++|+++++++++||+++|++
T Consensus 20 ~~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~eL~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v 96 (567)
T PLN02479 20 LTPLWFLERAAVVHPTRKSVVHG--SVRYTWAQTYQRCRRLASALAK-RSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAV 96 (567)
T ss_pred cCHHHHHHHHHhhCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHhCCcE
Confidence 56666666655 4669999986 6899999999999999999998 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhc------------CCCCEEEecCCCccc-----ccCCCccc
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSW------------GTTPVVAVPENLVND-----FKEGRFSD 182 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~------------~~~~vi~~~~~~~~~-----~~~~~~~~ 182 (560)
++|+++.++.+++.++++.+++ +++++++...+..... ....++.++...... ....+...
T Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (567)
T PLN02479 97 VNCVNIRLNAPTIAFLLEHSKS--EVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIE 174 (567)
T ss_pred EEEeccccCHHHHHHHHhhcCc--eEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCccc
Confidence 9999999999999999999999 9999887654432211 011233333211000 00112334
Q ss_pred HHHhhcccCCCCC-CCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHH
Q 037622 183 FHKLIAGKFDLVE-RPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIY 261 (560)
Q Consensus 183 ~~~~~~~~~~~~~-~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 261 (560)
+.+++........ ......+++++++|||||||.||+|+++|.++......... ...+..++++++.+|++|.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~h~~ 249 (567)
T PLN02479 175 YEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNAL-----IWGMNEGAVYLWTLPMFHCN 249 (567)
T ss_pred HHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHh-----hcCCCCCCEEEEecchhhhh
Confidence 5554443221111 12223456788999999999999999999998765544333 34577889999999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHH
Q 037622 262 GLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIE 341 (560)
Q Consensus 262 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~ 341 (560)
++...+..++..|.+++ ...+++..+++.++++++|++.++|+++..|.+.........+++++.++++|+++++.+.+
T Consensus 250 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~ 328 (567)
T PLN02479 250 GWCFTWTLAALCGTNIC-LRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLF 328 (567)
T ss_pred hHHHHHHHHhhcCceEe-ccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHH
Confidence 98655445566665554 45689999999999999999999999999998652222223568899999999999999999
Q ss_pred HHHHhCCCCeeecccchhhcccccccCCCCC--------C-CCcccccccccCCeE-EEEEeCCCCccCCCC--CcceEE
Q 037622 342 DFVGAFPHVDFIQGYGMTESTAVGTRGFNTK--------K-FSKYFSVGLLAPNIQ-AKVVDWVNGCFLPPG--STGELW 409 (560)
Q Consensus 342 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~--------~-~~~~~~~G~~~p~~~-~~v~d~~~~~~~~~g--~~Gel~ 409 (560)
++.+. +.++++.||+||+++.++.+.... . .....+.|.+.+++. ++++|++++.+++.+ +.|||+
T Consensus 329 ~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~ 406 (567)
T PLN02479 329 AMSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIV 406 (567)
T ss_pred HHHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEE
Confidence 99875 789999999999865443321100 0 011235678888876 789987778888764 579999
Q ss_pred EecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEc
Q 037622 410 LRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTG 489 (560)
Q Consensus 410 v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~ 489 (560)
++|++++.||+++++.+...| .++||+|||+++++++|.++++||.+|+|+.+|++|++.+||.+|.++|.|.+++|++
T Consensus 407 v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~ 485 (567)
T PLN02479 407 MRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVA 485 (567)
T ss_pred EeccchhhhhhcCcccccchh-cCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEe
Confidence 999999999999999999988 5899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceEEEEEEecCCC-----CCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 490 AMDKVLGEIPVAFVVRRDGS-----TLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 490 ~~~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
.+++..++.+++++++..+. ....++++++++++|+.++.|+.+++ +++|+|++||++|+.|++.+..
T Consensus 486 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gKv~r~~L~~~~~~ 558 (567)
T PLN02479 486 RPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATGKIQKHVLRAKAKE 558 (567)
T ss_pred ccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEe-ccCCCCCccCeeHHHHHHHHHh
Confidence 98888788899999877653 23357899999999999999998776 7899999999999999988765
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-64 Score=537.50 Aligned_cols=510 Identities=22% Similarity=0.271 Sum_probs=389.5
Q ss_pred CCCCHHHHHhccCC--CCceEEEEC-----CCC--ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHH
Q 037622 40 SLLDVDSFIFSHKH--NGRTALVDS-----LSG--YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIF 110 (560)
Q Consensus 40 ~~~~~~~~~~~~~~--~~~~a~~~~-----~~~--~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~ 110 (560)
...|+.++|.+.++ ++++|+... ..+ ..+||+||.++++++|.+|.+ +|+++||+|+|+++|+++|++++
T Consensus 40 ~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~ew~~~~ 118 (660)
T PLN02430 40 DITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRA-SGAEPGSRVGIYGSNCPQWIVAM 118 (660)
T ss_pred CCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHH
Confidence 34689998888664 568887632 111 247999999999999999999 89999999999999999999999
Q ss_pred HHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhh-hc----CC-CCEEEecCCCcccc-----cCCC
Q 037622 111 LALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLR-SW----GT-TPVVAVPENLVNDF-----KEGR 179 (560)
Q Consensus 111 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~-~~----~~-~~vi~~~~~~~~~~-----~~~~ 179 (560)
+||+++|++++|+++.++.+++.++++.+++ ++++++........ .. .. ..++.+++...... ....
T Consensus 119 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~--~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 196 (660)
T PLN02430 119 EACAAHSLICVPLYDTLGPGAVDYIVDHAEI--DFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVK 196 (660)
T ss_pred HHHHHcCCeEEEeccCCCHHHHHHHHhccCC--CEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcE
Confidence 9999999999999999999999999999999 99998765432221 11 11 23444432110000 0011
Q ss_pred cccHHHhhcccCC-CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChh
Q 037622 180 FSDFHKLIAGKFD-LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMF 258 (560)
Q Consensus 180 ~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 258 (560)
...+++++..... ........++|+++|+|||||||.||||++||+++...+.............++++|++++++|++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~ 276 (660)
T PLN02430 197 TYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLA 276 (660)
T ss_pred EEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHH
Confidence 2345555433211 111223467899999999999999999999999999877665431110012467899999999999
Q ss_pred hHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhcc---------------------
Q 037622 259 HIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGL--------------------- 317 (560)
Q Consensus 259 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~--------------------- 317 (560)
|.++... .+.++..|+++++... ++..+++.+++++||++.++|.+++.+.+.....
T Consensus 277 H~~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 354 (660)
T PLN02430 277 HILDRMI-EEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLA 354 (660)
T ss_pred HHHHHHH-HHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 9999864 4557889999987654 7888999999999999999999998876421000
Q ss_pred ---------CCC-------------CC-CccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCC
Q 037622 318 ---------CGN-------------SL-KSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKF 374 (560)
Q Consensus 318 ---------~~~-------------~l-~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~ 374 (560)
... .+ .++|.+++||+++++++.+.++. ++++.+++.||+||+++.++..... ..
T Consensus 355 ~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~-~~~~~i~~~YG~TE~~~~~~~~~~~-~~ 432 (660)
T PLN02430 355 WMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRV-TSCAFVVQGYGLTETLGPTTLGFPD-EM 432 (660)
T ss_pred HHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHH-hcCCCeeeecchhhhhhceEeeccc-cC
Confidence 000 01 57999999999999998766554 4357899999999998766554322 12
Q ss_pred CcccccccccCCeEEEEEeC-CCC-ccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEE
Q 037622 375 SKYFSVGLLAPNIQAKVVDW-VNG-CFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYI 452 (560)
Q Consensus 375 ~~~~~~G~~~p~~~~~v~d~-~~~-~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~ 452 (560)
...+++|.|.|++++++.|. +.+ .+++.+..|||+|+||+++.||+++|+.|...| .+|||+|||+|++|+||++++
T Consensus 433 ~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~dGw~~TGDig~~d~dG~l~i 511 (660)
T PLN02430 433 CMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILPNGVLKI 511 (660)
T ss_pred CCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhh-hccceeccceEEECCCCcEEE
Confidence 35789999999999999873 333 556667789999999999999999999999988 589999999999999999999
Q ss_pred Eccccceeee-cceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCC----------CCC------HHH
Q 037622 453 VDRLKEVIKY-NGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS----------TLT------EAA 515 (560)
Q Consensus 453 ~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------~~~------~~~ 515 (560)
.||++|+||+ +|++|+|.+||+++.++|.|.+++|++.. .+..++|+|++.+.. ..+ .++
T Consensus 512 ~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (660)
T PLN02430 512 IDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPE 588 (660)
T ss_pred EEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHH
Confidence 9999999998 79999999999999999999999999843 245688998875321 001 111
Q ss_pred HH----HHH-----HhccCCCCCcceEEEecC-C-----CCCCCCcchHHHHHHHHhccC
Q 037622 516 VI----DYL-----AQRVAPYKKVRRVVFTKS-I-----PKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 516 l~----~~~-----~~~l~~~~~p~~i~~~~~-l-----P~t~~GKi~r~~L~~~~~~~~ 560 (560)
++ +.+ ++.|+.+.+++++++.++ | .+|+++|+.|+.+++.|++.|
T Consensus 589 ~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i 648 (660)
T PLN02430 589 LKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEI 648 (660)
T ss_pred HHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHH
Confidence 22 222 235999999999888763 3 499999999999999998753
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-63 Score=526.71 Aligned_cols=507 Identities=29% Similarity=0.465 Sum_probs=411.1
Q ss_pred CCCHHHHHhccC--CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 41 LLDVDSFIFSHK--HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 41 ~~~~~~~~~~~~--~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
..++.++|...+ .++++|+++. ++++||.||.++++++|.+|.+..|+++|++|+++++|++++++++|||+++|+
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 99 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINM--GEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGM 99 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEEC--CccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence 357888877655 3568999986 789999999999999999998436999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC---CCCEEEe-cCCCc-cc-------------------
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG---TTPVVAV-PENLV-ND------------------- 174 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~---~~~vi~~-~~~~~-~~------------------- 174 (560)
+++|++|.++.+++.++++.+++ +.+++++.....+.... ....+.. ..... ..
T Consensus 100 ~~v~l~~~~~~~~~~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (560)
T PRK08974 100 IVVNVNPLYTPRELEHQLNDSGA--KAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPK 177 (560)
T ss_pred EEeccCccCCHHHHHHHHHhcCc--eEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhccccccc
Confidence 99999999999999999999999 88888765443332211 1111111 10000 00
Q ss_pred ccCCCcccHHHhhcccC-CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEE
Q 037622 175 FKEGRFSDFHKLIAGKF-DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLA 253 (560)
Q Consensus 175 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (560)
........+.+...... .........++++++++|||||||.||+|.++|.++..++........ .......+.++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~~ 255 (560)
T PRK08974 178 YHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYG--PLLHPGKELVVT 255 (560)
T ss_pred ccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhc--cccCCCccEEEE
Confidence 00000111111111111 111123346789999999999999999999999999876654432110 112345678889
Q ss_pred ecChhhHHhHHHHHHHHhhCCCEEEEeC-CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeeccc
Q 037622 254 VLPMFHIYGLSLFALGLLSLGPSVVVMR-RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGA 332 (560)
Q Consensus 254 ~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g 332 (560)
.+|++|.+++....+.++..|+++++.. ..++..+++.++++++|++.++|++++.+... .......++++|.+++||
T Consensus 256 ~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~-~~~~~~~~~~lr~~~~gg 334 (560)
T PRK08974 256 ALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNN-EEFQELDFSSLKLSVGGG 334 (560)
T ss_pred eCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhC-cCcccCCccceeEEEecC
Confidence 9999999998767777888888877654 56788999999999999999999999999875 333445678999999999
Q ss_pred CCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEec
Q 037622 333 APANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG 412 (560)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~ 412 (560)
+++++.+.+.|.+.+ ++++++.||+||++.+++.+... .....+++|.|+|++.++++| +++++++.|+.|||+++|
T Consensus 335 ~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g 411 (560)
T PRK08974 335 MAVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPYD-LDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKG 411 (560)
T ss_pred ccCCHHHHHHHHHHh-CCcEEeeecccccCceeeccCCC-CcccCCccccCcCCCEEEEEC-CCCCCCCCCCceEEEEec
Confidence 999999999999987 89999999999999876655432 223467899999999999999 478999999999999999
Q ss_pred ccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccC
Q 037622 413 PGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMD 492 (560)
Q Consensus 413 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~ 492 (560)
+.++.||+++++.+...+ .+|||+|||+++++++|.++++||.+|+|+++|.+|++.+||++|.++|+|.+++|++.++
T Consensus 412 ~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~ 490 (560)
T PRK08974 412 PQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPS 490 (560)
T ss_pred CCcchhhcCChhhhhhhh-hcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeec
Confidence 999999999999998888 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 493 KVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 493 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
...++.++++++... ...+.+++++++.++++.++.|..++++++||+|++||++|++|++....|
T Consensus 491 ~~~g~~~~~~v~~~~-~~~~~~~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~~~ 556 (560)
T PRK08974 491 EVSGEAVKIFVVKKD-PSLTEEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARAK 556 (560)
T ss_pred CCcceEEEEEEECCC-CCCCHHHHHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHHHHHHHHhh
Confidence 888888888777554 345678899999999999999999999999999999999999999988765
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-63 Score=525.23 Aligned_cols=504 Identities=22% Similarity=0.262 Sum_probs=409.6
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
+|+.+++.+.++ ++++|++++ ++.+||.||.++++++|.+|.+ +|+++||+|+++++|+++++++++||+++|++
T Consensus 3 ~~l~~~~~~~a~~~p~~~a~~~~--~~~~ty~el~~~~~~la~~L~~-~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~ 79 (533)
T PRK07798 3 WNIADLFEAVADAVPDRVALVCG--DRRLTYAELEERANRLAHYLIA-QGLGPGDHVGIYARNRIEYVEAMLGAFKARAV 79 (533)
T ss_pred ccHHHHHHHHHHhCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeE
Confidence 578888888875 459999997 7899999999999999999999 89999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC-----CCEEEecCCCcccccCCCcccHHHhhcccCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-----TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLV 194 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (560)
++|+++.++.+++.++++.+++ ++++++......+.+... ..++.+++..... ...+...+.+.........
T Consensus 80 ~v~l~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 156 (533)
T PRK07798 80 PVNVNYRYVEDELRYLLDDSDA--VALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGND-LLPGAVDYEDALAAGSPER 156 (533)
T ss_pred EEecCcCCCHHHHHHHHhhcCC--CEEEEchhhHHHHHHHhccCCCccEEEEecCCcccc-cCCccccHHHHHhccCCcC
Confidence 9999999999999999999999 999988776555544321 1233443322111 1112334555544332222
Q ss_pred CCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcc----cccC------CCCcEEEEecChhhHHhHH
Q 037622 195 ERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQ----YEYL------SSEAVFLAVLPMFHIYGLS 264 (560)
Q Consensus 195 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~~~~p~~~~~g~~ 264 (560)
.... ...+.++++|||||||.||+|+++|.++.............. ...+ ..+++++...|++|..++.
T Consensus 157 ~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~ 235 (533)
T PRK07798 157 DFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQW 235 (533)
T ss_pred CCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHH
Confidence 1112 223456899999999999999999999876554433211000 0111 5678999999999999995
Q ss_pred HHHHHHhhCCCEEEEeC--CcCHHHHHHHHHHhCcceeccCcHHHHH-HHHhhhccCCCCCCccceeecccCCCCHHHHH
Q 037622 265 LFALGLLSLGPSVVVMR--RFEASEMLKVIDKYGVTHFPVVPPILMA-LTKAAKGLCGNSLKSLKQVSSGAAPANSKIIE 341 (560)
Q Consensus 265 ~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~l~~~P~~~~~-l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~ 341 (560)
.++.++..|+++++.+ .+++..+++.++++++|.+.++|..+.. +...........++++|.+++||+++++++.+
T Consensus 236 -~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~~~~~ 314 (533)
T PRK07798 236 -AAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPSVKE 314 (533)
T ss_pred -HHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCHHHHH
Confidence 7889999999999998 7899999999999999999999876643 33321112345678999999999999999999
Q ss_pred HHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccc--cccCCeEEEEEeCCCCccCCCCCc--ceEEEecccchh
Q 037622 342 DFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVG--LLAPNIQAKVVDWVNGCFLPPGST--GELWLRGPGTMK 417 (560)
Q Consensus 342 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G--~~~p~~~~~v~d~~~~~~~~~g~~--Gel~v~~~~~~~ 417 (560)
++.+.+++..+++.||+||++.++...... .....| .+.++..++++| +++++++.|+. |+++ .++.++.
T Consensus 315 ~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~----~~~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~~~ 388 (533)
T PRK07798 315 ALLELLPNVVLTDSIGSSETGFGGSGTVAK----GAVHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHIPL 388 (533)
T ss_pred HHHHHcCCCeEEeeecccccccccccCCCC----CCccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCccc
Confidence 999999889999999999997665543211 112233 788999999999 56778998887 6666 4568999
Q ss_pred hhcCCchhhhhccC---CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCC
Q 037622 418 EYINNADATMSTID---KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKV 494 (560)
Q Consensus 418 gy~~~~~~~~~~~~---~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~ 494 (560)
||+++++.+.+.|. +.+||+|||+++++++|.+++.||.+|+|+.+|++|++.+||+++.++|.|.+++|++.+++.
T Consensus 389 gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~ 468 (533)
T PRK07798 389 GYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDER 468 (533)
T ss_pred cccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcc
Confidence 99999999988773 346999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 495 LGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 495 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
.++.+++++++.++...+.++++++++++|+.+++|..+++++++|+|++||++|+.|+++++++
T Consensus 469 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~~~~~~~~~ 533 (533)
T PRK07798 469 WGQEVVAVVQLREGARPDLAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRWAKEQAAER 533 (533)
T ss_pred cCceEEEEEEECCCCCCCHHHHHHHHhhhcccCCCCeEEEEcccCCCCCcchhhHHHHhhhhccC
Confidence 88889999998877677889999999999999999999999999999999999999999998874
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-63 Score=521.71 Aligned_cols=484 Identities=27% Similarity=0.385 Sum_probs=399.1
Q ss_pred eEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHH
Q 037622 57 TALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQV 136 (560)
Q Consensus 57 ~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l 136 (560)
.|++++ ++.+||.||.++++++|++|.+ +|+++|++|+++++|+++++++++||+++|++++++++.++.+++.+++
T Consensus 3 ~~~~~~--~~~~Ty~el~~~~~~la~~l~~-~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l 79 (509)
T PRK12406 3 ATIISG--DRRRSFDELAQRAARAAGGLAA-LGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYIL 79 (509)
T ss_pred eEEEEC--CeeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHH
Confidence 356665 7899999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEEeeccchHHhhhcCC--CCEEEecCCC--cc--c------ccCCCcccHHHhhcccCCCCCCCCCCCCCE
Q 037622 137 TLCKTKISLAFTIYENVDKLRSWGT--TPVVAVPENL--VN--D------FKEGRFSDFHKLIAGKFDLVERPVIRQQDT 204 (560)
Q Consensus 137 ~~~~~~~~~v~~~~~~~~~~~~~~~--~~vi~~~~~~--~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (560)
+.+++ ++++++......+..... ..++...... .. . ........+++....... .....++++
T Consensus 80 ~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 154 (509)
T PRK12406 80 EDSGA--RVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEP---YDGPPVPQP 154 (509)
T ss_pred hccCC--cEEEEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccCc---cCCCCCCCc
Confidence 99999 999887765554432211 1222221110 00 0 001122334443322111 122356899
Q ss_pred EEEEcCCCCCCCchhhhhhhHHHHH---HHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeC
Q 037622 205 AAILYSSGTTGASKGAELTHGNFIA---AVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMR 281 (560)
Q Consensus 205 a~i~~TSGTTG~PK~v~~t~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 281 (560)
++++|||||||.||+|+++|..... ....... ..++..++++++..|++|..+... .+.++..|+++++.+
T Consensus 155 a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~ 228 (509)
T PRK12406 155 QSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRAL-----IYGLKPGIRALLTGPLYHSAPNAY-GLRAGRLGGVLVLQP 228 (509)
T ss_pred eEEEECCCCCCCCceEEEechhHHHHHHHHHhhhh-----hcCCCCCceEEEEeCCcccchHHH-HHHHHhhheEEEEcc
Confidence 9999999999999999987655433 2222222 456788999999999999888753 445678899999988
Q ss_pred CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhh
Q 037622 282 RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTE 360 (560)
Q Consensus 282 ~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE 360 (560)
.+++..+++.++++++|.+.++|+++..+++.... ....+++++|.++.||+++++++++++.+.+ ++.+++.||+||
T Consensus 229 ~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE 307 (509)
T PRK12406 229 RFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWW-GPVIYEYYGSTE 307 (509)
T ss_pred CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHc-CCcEEeeccccc
Confidence 88999999999999999999999999999864221 2234678999999999999999999999988 789999999999
Q ss_pred cccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchh-hhcCCchhhhhccCCCCceecC
Q 037622 361 STAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMK-EYINNADATMSTIDKEGWLHTG 439 (560)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~-gy~~~~~~~~~~~~~~~~~~TG 439 (560)
++.+++.... .....++++|.|+|++.++++| +++++++.|+.|||+++++.++. +|+++++.+...+ .++||+||
T Consensus 308 ~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-~~~~~~TG 384 (509)
T PRK12406 308 SGAVTFATSE-DALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID-RGGFITSG 384 (509)
T ss_pred cCceEecCcc-cccccCCCcCccCCCcEEEEEC-CCCCCCCCCCceEEEEECCccccccccCCchhccccc-CCCCeEEc
Confidence 9986654432 2234567899999999999999 56899999999999999998765 9999998887665 68999999
Q ss_pred ceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHH
Q 037622 440 DIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDY 519 (560)
Q Consensus 440 D~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 519 (560)
|+++++++|.+++.||.+|+||.+|.+|++.+||++|.++|+|.++++++.++...++.+++++++.++...+.++++++
T Consensus 385 D~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 464 (509)
T PRK12406 385 DVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIRAQ 464 (509)
T ss_pred cEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888999998877666788999999
Q ss_pred HHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 520 LAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 520 ~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
++++++++++|..+++++++|+|++||++|++|++.+..
T Consensus 465 l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~ 503 (509)
T PRK12406 465 LKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWA 503 (509)
T ss_pred HHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHHh
Confidence 999999999999999999999999999999999998764
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-64 Score=544.57 Aligned_cols=506 Identities=21% Similarity=0.251 Sum_probs=385.1
Q ss_pred CCCHHHHHhccCC--CCceEEEECC-------------------------CCceecHHHHHHHHHHHHHHHHHhhCCCCC
Q 037622 41 LLDVDSFIFSHKH--NGRTALVDSL-------------------------SGYSISYPQLFPLVQSVASGLRHHFGISQG 93 (560)
Q Consensus 41 ~~~~~~~~~~~~~--~~~~a~~~~~-------------------------~~~~~Ty~el~~~v~~la~~L~~~~g~~~g 93 (560)
..|+.++|.++++ ++++|+.... ..+++||+||.++++++|.+|.+ +|+++|
T Consensus 68 ~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~-~Gv~~g 146 (700)
T PTZ00216 68 GPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAE-LGLTKG 146 (700)
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHH-hCCCCC
Confidence 4689999999885 5688887521 24789999999999999999999 899999
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhc------CCCCEEEe
Q 037622 94 DAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSW------GTTPVVAV 167 (560)
Q Consensus 94 d~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~------~~~~vi~~ 167 (560)
|+|+|+++|+++|+++++||+++|++++|+++.++.+++.++++.+++ ++++++......+... ....++.+
T Consensus 147 d~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~--~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~ 224 (700)
T PTZ00216 147 SNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETEC--KAIVCNGKNVPNLLRLMKSGGMPNTTIIYL 224 (700)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCc--cEEEECHHHHHHHHHhhhhccCCceEEEEE
Confidence 999999999999999999999999999999999999999999999999 9999987655444321 11234444
Q ss_pred cCCCcc-cccCCCcccHHHhhcccC---C-CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhccc
Q 037622 168 PENLVN-DFKEGRFSDFHKLIAGKF---D-LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQY 242 (560)
Q Consensus 168 ~~~~~~-~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~ 242 (560)
+..... .........+.+++.... . ........++|+++|+|||||||.||||++||+++.+.+...........
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~ 304 (700)
T PTZ00216 225 DSLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLI 304 (700)
T ss_pred CCCccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhccccc
Confidence 321100 001122345666554331 1 11123346789999999999999999999999999988776654211101
Q ss_pred ccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHH-------HHHHhCcceeccCcHHHHHHHHhhh
Q 037622 243 EYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLK-------VIDKYGVTHFPVVPPILMALTKAAK 315 (560)
Q Consensus 243 ~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~-------~l~~~~~t~l~~~P~~~~~l~~~~~ 315 (560)
..+.++|++++++|++|+++.. .....+..|+++.+. ++..+.+ .+++++||++.++|.+++.+.+...
T Consensus 305 ~~~~~~d~~ls~lPl~H~~~~~-~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~ 380 (700)
T PTZ00216 305 GPPEEDETYCSYLPLAHIMEFG-VTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVE 380 (700)
T ss_pred CCCCCCCEEEEEChHHHHHHHH-HHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHH
Confidence 1246789999999999999985 445567788877763 3555554 6889999999999999988764310
Q ss_pred cc------------------------CCC----------------CCCccceeecccCCCCHHHHHHHHHhCCCCeeecc
Q 037622 316 GL------------------------CGN----------------SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQG 355 (560)
Q Consensus 316 ~~------------------------~~~----------------~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 355 (560)
.. ... ..+++|.+++||+++++++.+.++..+ + ++++.
T Consensus 381 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~-~-~l~~~ 458 (700)
T PTZ00216 381 AKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-G-MVIQG 458 (700)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHh-h-hHhhc
Confidence 00 000 015799999999999999998888776 6 99999
Q ss_pred cchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCC-CccCCCCCcceEEEecccchhhhcCCchhhhhccCCCC
Q 037622 356 YGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVN-GCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEG 434 (560)
Q Consensus 356 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~ 434 (560)
||+||+++.++.... .....+++|+|+||++++|+|.++ ....+++..|||+|+||+++.||+++|+.|.+.|+.+|
T Consensus 459 YG~TEt~~~~~~~~~--~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dG 536 (700)
T PTZ00216 459 WGLTETVCCGGIQRT--GDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDG 536 (700)
T ss_pred cCcccccccccccCC--CCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccC
Confidence 999999876654432 234578999999999999999543 22345567899999999999999999999999998899
Q ss_pred ceecCceEEEccCCcEEEEccccceee-ecceecChHHHHHHHhcCCCccc--EEEEcccCCCCCceEEEEEEecCCC--
Q 037622 435 WLHTGDIAYFDEDGYLYIVDRLKEVIK-YNGYQISPADLETVLICHPEILD--VAVTGAMDKVLGEIPVAFVVRRDGS-- 509 (560)
Q Consensus 435 ~~~TGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~IE~~l~~~~~v~~--~~v~~~~~~~~~~~~~~~v~~~~~~-- 509 (560)
||+|||+|++|+||.++++||+||+|| .+|++|+|.+||+++.++|.|.+ ++|++.++. ..+++++++....
T Consensus 537 w~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~---~~l~a~vv~~~~~~~ 613 (700)
T PTZ00216 537 WFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPAR---SYICALVLTDEAKAM 613 (700)
T ss_pred CeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCC---ceEEEEEecCHHHHH
Confidence 999999999999999999999999999 59999999999999999999997 344444332 3578888764210
Q ss_pred --------CCC------HH----HHHHHH-----HhccCCCCCcceEEEecC-C-----CCCCCCcchHHHHHHHHhccC
Q 037622 510 --------TLT------EA----AVIDYL-----AQRVAPYKKVRRVVFTKS-I-----PKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 510 --------~~~------~~----~l~~~~-----~~~l~~~~~p~~i~~~~~-l-----P~t~~GKi~r~~L~~~~~~~~ 560 (560)
... .+ .+.+.+ ++.+..+.+|+.|+++.+ + -+|+++|+.|+++++.|++.|
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i 693 (700)
T PTZ00216 614 AFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLI 693 (700)
T ss_pred HHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHH
Confidence 000 11 122222 235778889999888743 3 379999999999999998754
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-64 Score=628.79 Aligned_cols=483 Identities=21% Similarity=0.310 Sum_probs=414.8
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.+++++|.++++ ++++|++++ ++++||+||.++++++|+.|.+ .|+++|++|+|++++++++++++||++++|++
T Consensus 1131 ~~l~~~~~~~a~~~p~~~Al~~~--~~~lTY~eL~~~~~~lA~~L~~-~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~ 1207 (4334)
T PRK05691 1131 AWLPELLNEQARQTPERIALVWD--GGSLDYAELHAQANRLAHYLRD-KGVGPDVCVAIAAERSPQLLVGLLAILKAGGA 1207 (4334)
T ss_pred CCHHHHHHHHHHhCCCCeEEEEC--CceEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 579999888764 669999987 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVI 199 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (560)
++|++|.++.+++.++++.+++ ++++++......+........+.++... . ............
T Consensus 1208 ~vpld~~~p~~rl~~il~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~-----------~----~~~~~~~~~~~~ 1270 (4334)
T PRK05691 1208 YVPLDPDYPAERLAYMLADSGV--ELLLTQSHLLERLPQAEGVSAIALDSLH-----------L----DSWPSQAPGLHL 1270 (4334)
T ss_pred EEecCcCChHHHHHHHHHhcCC--CEEEecchhhhhcccccCceEEeecccc-----------c----cccCCCCCCCCC
Confidence 9999999999999999999999 9999887665544332212222222110 0 000011112234
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.++++++++|||||||.||||+++|+++.+.+..... ...++++++++.+.|++|..++. .++.++..|+++++
T Consensus 1271 ~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~-----~~~~~~~d~~l~~~~~~fd~s~~-~~~~~L~~G~~l~i 1344 (4334)
T PRK05691 1271 HGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQA-----TYALDDSDVLMQKAPISFDVSVW-ECFWPLITGCRLVL 1344 (4334)
T ss_pred CCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHH-----hcCCCCCCEEEEeCCccHHHHHH-HHHHHHhCCCEEEE
Confidence 6789999999999999999999999999988877665 56788999999999999988884 88899999999999
Q ss_pred eC---CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeeccc
Q 037622 280 MR---RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGY 356 (560)
Q Consensus 280 ~~---~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~Y 356 (560)
.+ ..++..+++.++++++|++.++|++++.+... . ....++++|.+++|||++++++.++|.+.+|+++++|.|
T Consensus 1345 ~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~-~--~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 1421 (4334)
T PRK05691 1345 AGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDE-P--LAAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRY 1421 (4334)
T ss_pred cCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhC-c--ccccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCC
Confidence 76 36899999999999999999999999999764 1 234678999999999999999999999999899999999
Q ss_pred chhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCC----
Q 037622 357 GMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDK---- 432 (560)
Q Consensus 357 G~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~---- 432 (560)
|+||++..++............++|+|++++.++|+| +++++++.|+.|||+|+|+++++||+++|+.|.+.|..
T Consensus 1422 G~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~ 1500 (4334)
T PRK05691 1422 GPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLD-AELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLG 1500 (4334)
T ss_pred CcChheeeeeeeecccccCCCCcccceeCCCEEEEEC-CCCCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCC
Confidence 9999987765433222233467899999999999999 67899999999999999999999999999999988732
Q ss_pred ---CCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCC
Q 037622 433 ---EGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS 509 (560)
Q Consensus 433 ---~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 509 (560)
.+||+|||+|++++||.++++||+||+||++|++|++.|||++|.++|+|.+++|++..+. .++.++++++...+.
T Consensus 1501 ~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~-~~~~lva~~~~~~~~ 1579 (4334)
T PRK05691 1501 EDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGA-AGAQLVGYYTGEAGQ 1579 (4334)
T ss_pred CCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCC-CCCEEEEEEEeCCCC
Confidence 3599999999999999999999999999999999999999999999999999999865544 457889999887776
Q ss_pred CCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 510 TLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 510 ~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
....++++++++++||.|++|..++++++||+|++||+||++|++.
T Consensus 1580 ~~~~~~l~~~l~~~Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691 1580 EAEAERLKAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred CCCHHHHHHHHHHhCccccCCcEEEEccccCCCCCCCcChhhcCcc
Confidence 6778899999999999999999999999999999999999999753
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=500.05 Aligned_cols=510 Identities=23% Similarity=0.345 Sum_probs=402.8
Q ss_pred CCCCCHHHHHhccCCCC--ceEEEE-----CC-CCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHH
Q 037622 39 DSLLDVDSFIFSHKHNG--RTALVD-----SL-SGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIF 110 (560)
Q Consensus 39 ~~~~~~~~~~~~~~~~~--~~a~~~-----~~-~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~ 110 (560)
++..|+++.|.+..+.. .+++-. +. .-..+||.|..+++..++..|+. +|+++++.|+|+.-|++||++..
T Consensus 72 ~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~-lG~~~~~~VGIy~~N~pEWiis~ 150 (691)
T KOG1256|consen 72 DGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRK-LGVKEDSKVGIYAFNRPEWIISE 150 (691)
T ss_pred CCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHH-hCCCCCceEEEeccCChhhHHhH
Confidence 46799999999887633 455432 11 22689999999999999999998 99999999999999999999999
Q ss_pred HHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEee-ccchHHhhhcCC------CC-EEEecCCCccccc--C---
Q 037622 111 LALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTI-YENVDKLRSWGT------TP-VVAVPENLVNDFK--E--- 177 (560)
Q Consensus 111 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~-~~~~~~~~~~~~------~~-vi~~~~~~~~~~~--~--- 177 (560)
+||...|+++||+..+++++.++++++++.. .+++++ +.....+.+... .+ ++.++... +... .
T Consensus 151 ~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~--~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~-~~~~~~~~~~ 227 (691)
T KOG1256|consen 151 MACYAYSLVNVPLYDTLGAEAVHYIINHAEI--SIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPS-DELKEKAENN 227 (691)
T ss_pred HHHHhcCCEEeecccCCCHHHHHHHHHhcce--eEEEEeCHHHHHHHHhhcccccCccceeEEEecCCc-hhhhhhhhcC
Confidence 9999999999999999999999999999999 999999 445555544221 23 44444332 1111 1
Q ss_pred -CCcccHHHhhcccCCCC-CC-CCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccc-cCCCCcEEEE
Q 037622 178 -GRFSDFHKLIAGKFDLV-ER-PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYE-YLSSEAVFLA 253 (560)
Q Consensus 178 -~~~~~~~~~~~~~~~~~-~~-~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 253 (560)
-.+.+|+++.+-+.... .+ ....|+|+|.|+|||||||.||||++||+|+.+.+............ .....|++++
T Consensus 228 gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lS 307 (691)
T KOG1256|consen 228 GVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLS 307 (691)
T ss_pred CeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEE
Confidence 22678888877653222 22 36688999999999999999999999999999866543322111111 1223699999
Q ss_pred ecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhh-------------------
Q 037622 254 VLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAA------------------- 314 (560)
Q Consensus 254 ~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~------------------- 314 (560)
++|+.|++.... ....++.|+++.+.++ |+..+.+.+++.+||.+.++|.+++++-...
T Consensus 308 yLPLAHi~er~~-~~~~~~~G~~IgF~~g-D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~ 385 (691)
T KOG1256|consen 308 YLPLAHIFERVV-ELYTFYIGAKIGFARG-DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAM 385 (691)
T ss_pred eCcHHHHHHHHH-HHhHhhcccEEEEecC-ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 999999999964 4445689999999884 8889999999999999999999998864420
Q ss_pred --hc----cCCCC-------------------CCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCC
Q 037622 315 --KG----LCGNS-------------------LKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGF 369 (560)
Q Consensus 315 --~~----~~~~~-------------------l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~ 369 (560)
.. ..+.. -.++|.+++|++|+++++...++..+ +++++++||+||+++.++...
T Consensus 386 ~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~~ 464 (691)
T KOG1256|consen 386 AYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLTL 464 (691)
T ss_pred HHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccCCceEecc
Confidence 00 00000 15789999999999999999999998 899999999999996655544
Q ss_pred CCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCc
Q 037622 370 NTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGY 449 (560)
Q Consensus 370 ~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~ 449 (560)
..+ ...+++|.|+|+++++++|.++.+.-+.|..|||||+|+++|.||+++|+.|.+.+|.+||+||||+|+++++|.
T Consensus 465 ~~d--~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~ 542 (691)
T KOG1256|consen 465 PGD--NVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGT 542 (691)
T ss_pred CCC--CCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeECCCcc
Confidence 433 378999999999999999987777777788999999999999999999999999999999999999999999999
Q ss_pred EEEEccccceeee-cceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCC--------C--H-----
Q 037622 450 LYIVDRLKEVIKY-NGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTL--------T--E----- 513 (560)
Q Consensus 450 l~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--------~--~----- 513 (560)
+.+.||++++||+ .|+.|.|..||++..+.+.|.+.+|.+..... .+++.|++...... . .
T Consensus 543 l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~---~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~ 619 (691)
T KOG1256|consen 543 LKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRS---FLVAIVVPDPEVLKSWAAKDGVKGTFEELCR 619 (691)
T ss_pred EEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchh---cEEEEEecChhhchhhHHHccCchhHHHHhc
Confidence 9999999999999 89999999999999999999999999876554 48899988543211 1 0
Q ss_pred ---------HHHHHHH-HhccCCCCCcceEEEec-CC-----CCCCCCcchHHHHHHHHhccC
Q 037622 514 ---------AAVIDYL-AQRVAPYKKVRRVVFTK-SI-----PKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 514 ---------~~l~~~~-~~~l~~~~~p~~i~~~~-~l-----P~t~~GKi~r~~L~~~~~~~~ 560 (560)
.|+.+.- .+.|..+...+.+.+.. .| =.||+-|+.|..|.++|+++|
T Consensus 620 n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~I 682 (691)
T KOG1256|consen 620 NLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQI 682 (691)
T ss_pred ChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHH
Confidence 1111111 22355666777777653 22 278999999999999998865
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-63 Score=552.27 Aligned_cols=488 Identities=20% Similarity=0.201 Sum_probs=384.4
Q ss_pred CCCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhC
Q 037622 40 SLLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117 (560)
Q Consensus 40 ~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G 117 (560)
...|+.++|.++++ ++++|+++. ++++||+||+++++++|++|.+ +|+++||+|+|+++|+++++++++||+++|
T Consensus 445 ~~~sl~~ll~~~a~~~pd~~Al~~~--~~~lTY~eL~~ra~rlA~~L~~-~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aG 521 (994)
T PRK07868 445 TRISLGRIIAEQARDAPKGEFLLFD--GRVHTYEAVNRRINNVVRGLIA-VGVRQGDRVGVLMETRPSALVAIAALSRLG 521 (994)
T ss_pred CCccHHHHHHHHHHHCCCCeEEEeC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence 34789988887765 569999986 7899999999999999999999 899999999999999999999999999999
Q ss_pred CeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCC---CcccHHHhhcccCC--
Q 037622 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEG---RFSDFHKLIAGKFD-- 192 (560)
Q Consensus 118 ~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~-- 192 (560)
++++|++|. .++.++++.+++ ++++++......+.... ..+++++.......... ....+++.......
T Consensus 522 av~vpl~p~---~~l~~il~~s~~--~~li~~~~~~~~~~~~~-~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (994)
T PRK07868 522 AVAVLMPPD---TDLAAAVRLGGV--TEIITDPTNLEAARQLP-GRVLVLGGGESRDLDLPDDADVIDMEKIDPDAVELP 595 (994)
T ss_pred CEEEEeCCc---hhHHHHHhccCC--eEEEEChHHHHHHHhcC-ceEEEecCCccccccCCcchhhhhhhhcCcccccCC
Confidence 999999985 678999999999 99999877666554332 44555543210000000 01111111111000
Q ss_pred C-CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHh
Q 037622 193 L-VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLL 271 (560)
Q Consensus 193 ~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l 271 (560)
. .......++++++|+|| ||||.||++.++|.++......... ...+..+|++++.+|++|.+++...++.++
T Consensus 596 ~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~-----~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l 669 (994)
T PRK07868 596 GWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTAS-----AAALDRRDTVYCLTPLHHESGLLVSLGGAV 669 (994)
T ss_pred cccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhh-----hcCCCCCCeEEEecChHHHhHHHHHHHHHh
Confidence 0 00111236899999998 5777777777787766544333332 356788999999999999999976666777
Q ss_pred hCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCe
Q 037622 272 SLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVD 351 (560)
Q Consensus 272 ~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~ 351 (560)
..|+++++.+.+++..+++.++++++|++.++|++++.|++. ......+++++|.++. +.+++++++++.+.|++++
T Consensus 670 ~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~-~~~~~~~~~slr~~~g--~gl~~~l~~~~~~~~~~~~ 746 (994)
T PRK07868 670 VGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDD-PAFVLHGNHPVRLFIG--SGMPTGLWERVVEAFAPAH 746 (994)
T ss_pred ccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhC-cCCccCCCCceEEEec--CCCCHHHHHHHHHHhCchh
Confidence 778888888889999999999999999999999999999875 3333445678997763 3499999999999997789
Q ss_pred eecccchhhcccccccCCCCCCCCcccccccccCCe-EEEEE--eC--------CCC--ccCCCCCcceEEEecccchhh
Q 037622 352 FIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNI-QAKVV--DW--------VNG--CFLPPGSTGELWLRGPGTMKE 418 (560)
Q Consensus 352 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~-~~~v~--d~--------~~~--~~~~~g~~Gel~v~~~~~~~g 418 (560)
+++.||+||++..... . ...+++++|+|+||+ ++++. |+ +++ +.++.|+.|||+++++..
T Consensus 747 l~~~YG~TE~~~~~~~-~---~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~--- 819 (994)
T PRK07868 747 VVEFFATTDGQAVLAN-V---SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP--- 819 (994)
T ss_pred eeeeeecccccccccc-c---CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC---
Confidence 9999999998765432 1 123568999999997 66653 21 344 567889999999999853
Q ss_pred hcCCchhhhh--ccC-CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCC
Q 037622 419 YINNADATMS--TID-KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVL 495 (560)
Q Consensus 419 y~~~~~~~~~--~~~-~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~ 495 (560)
+ +|+.+.. .|. ++|||+|||+|++|+||+|+|+||.||+||++|.+|+|.|||++|.+||.|.+++|++.+++.
T Consensus 820 -~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~- 896 (994)
T PRK07868 820 -I-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG- 896 (994)
T ss_pred -C-ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-
Confidence 2 4544322 242 479999999999999999999999999999999999999999999999999999999998876
Q ss_pred CceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHH
Q 037622 496 GEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFL 556 (560)
Q Consensus 496 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~ 556 (560)
++.++++|++.++...+.++|+++|++ ++.|++|+.|+++++||+|++||++|++|+++.
T Consensus 897 ~~~~~a~Vv~~~~~~~~~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~ 956 (994)
T PRK07868 897 RQLAVAAVTLRPGAAITAADLTEALAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAG 956 (994)
T ss_pred CceEEEEEEeCCCCcCCHHHHHHHHHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhcC
Confidence 678899999888777888999999986 999999999999999999999999999998763
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-63 Score=519.72 Aligned_cols=485 Identities=29% Similarity=0.463 Sum_probs=398.1
Q ss_pred EEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHH
Q 037622 58 ALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVT 137 (560)
Q Consensus 58 a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~ 137 (560)
|++....++.+||.||.++++++|.+|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++
T Consensus 2 ~~~~~~~~~~~ty~el~~~v~~~a~~L~~-~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~ 80 (502)
T PRK08276 2 AVIMAPSGEVVTYGELEARSNRLAHGLRA-LGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVD 80 (502)
T ss_pred ceEecCCCcEEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHh
Confidence 33433348999999999999999999999 79999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEEeeccchHHhhhcC-----CCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCCC
Q 037622 138 LCKTKISLAFTIYENVDKLRSWG-----TTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSG 212 (560)
Q Consensus 138 ~~~~~~~~v~~~~~~~~~~~~~~-----~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG 212 (560)
.+++ +++++++.......... ....+.+.... ......+.+....... ......++.++++||||
T Consensus 81 ~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~a~i~~TSG 150 (502)
T PRK08276 81 DSGA--KVLIVSAALADTAAELAAELPAGVPLLLVVAGP-----VPGFRSYEEALAAQPD---TPIADETAGADMLYSSG 150 (502)
T ss_pred cCCC--CEEEEccchhhHHHHHhhhccccccEEEEeCCC-----CCccccHHHHHhcCCC---CCCCCCCcceEEEECCC
Confidence 9999 88988876655443321 12222222111 1122334433332211 11224567899999999
Q ss_pred CCCCchhhhhhhHHHHHHHH--HHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHH
Q 037622 213 TTGASKGAELTHGNFIAAVE--LFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLK 290 (560)
Q Consensus 213 TTG~PK~v~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~ 290 (560)
|||.||+|.++|.++..... ........ ......++++++..|++|..++. ..+.++..|+++++.+.+++..+++
T Consensus 151 tTG~PK~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ 228 (502)
T PRK08276 151 TTGRPKGIKRPLPGLDPDEAPGMMLALLGF-GMYGGPDSVYLSPAPLYHTAPLR-FGMSALALGGTVVVMEKFDAEEALA 228 (502)
T ss_pred CCCCCceEEEccCCcchhhhhHHhhhhhhh-cccCCCCCEEEEcCcHHHHHHHH-HHHHHHhccceEEEcCCCCHHHHHH
Confidence 99999999988876543321 11111000 12234678999999999999985 4457899999999998899999999
Q ss_pred HHHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCC
Q 037622 291 VIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGF 369 (560)
Q Consensus 291 ~l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~ 369 (560)
.++++++|++.++|+++..+.+.... ....+++++|.+++||+++++++++++.+.+ +..+++.||+||++.+++...
T Consensus 229 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~ 307 (502)
T PRK08276 229 LIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVITS 307 (502)
T ss_pred HHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEecC
Confidence 99999999999999999999865221 2234678999999999999999999999988 788999999999998655432
Q ss_pred CCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCc
Q 037622 370 NTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGY 449 (560)
Q Consensus 370 ~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~ 449 (560)
. ......+++|+|+ ++.++++| +++.+++.|+.|||+++|+.++.||+++++.+...+.+++||+|||+++++++|.
T Consensus 308 ~-~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~ 384 (502)
T PRK08276 308 E-DWLAHPGSVGKAV-LGEVRILD-EDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGY 384 (502)
T ss_pred c-cccccCCCcceec-ccEEEEEC-CCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcC
Confidence 2 1233567899999 88999999 5688999999999999999999999999999999987779999999999999999
Q ss_pred EEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCH---HHHHHHHHhccCC
Q 037622 450 LYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTE---AAVIDYLAQRVAP 526 (560)
Q Consensus 450 l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~ 526 (560)
+++.||.||++|.+|.+|++.+||.++.++|+|.++++++..++..++.+++++++.++..... ++++++++++|+.
T Consensus 385 ~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~ 464 (502)
T PRK08276 385 LYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAH 464 (502)
T ss_pred EEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChhhHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999888899999999876644333 4799999999999
Q ss_pred CCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 527 YKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 527 ~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
++.|..+++++++|+|++||++|++|++.+-.+
T Consensus 465 ~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 497 (502)
T PRK08276 465 YKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEG 497 (502)
T ss_pred CCCCcEEEEecCCCCCcccchhHHHHHHHHHhh
Confidence 999999999999999999999999999997543
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-64 Score=627.77 Aligned_cols=481 Identities=19% Similarity=0.257 Sum_probs=409.4
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.+++++|.+++. |+++|++++ +.++||+||.++++++|+.|.+ +|+++|++|+|++++++++++++||++++|++
T Consensus 3720 ~~~~~~~~~~~~~~p~~~Av~~~--~~~~tY~eL~~~~~~la~~L~~-~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a 3796 (4334)
T PRK05691 3720 QSYVRLFEAQVAAHPQRIAASCL--DQQWSYAELNRAANRLGHALRA-AGVGVDQPVALLAERGLDLLGMIVGSFKAGAG 3796 (4334)
T ss_pred cCHHHHHHHHHHhCCCceEEEcC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcE
Confidence 589999988774 679999988 7899999999999999999998 89999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC------C-CEEEecCCCcccccCCCcccHHHhhccc-C
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT------T-PVVAVPENLVNDFKEGRFSDFHKLIAGK-F 191 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~ 191 (560)
++|++|.++.+++.++++.+++ ++++++............ . .++..++. .... .
T Consensus 3797 ~vpld~~~p~~r~~~il~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 3858 (4334)
T PRK05691 3797 YLPLDPGLPAQRLQRIIELSRT--PVLVCSAACREQARALLDELGCANRPRLLVWEEV----------------QAGEVA 3858 (4334)
T ss_pred EeCCCCCChHHHHHHHHHhcCC--CEEEecCcccchhhhhhcccccccccceeeeccc----------------cccccc
Confidence 9999999999999999999999 889988765433221110 1 11111110 0000 1
Q ss_pred CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHh
Q 037622 192 DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLL 271 (560)
Q Consensus 192 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l 271 (560)
.........++++|||+|||||||.||||+++|+++.+.+..... .+.+++.++++...++.+..+.. .++.++
T Consensus 3859 ~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~fd~s~~-~~~~~l 3932 (4334)
T PRK05691 3859 SHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVP-----YLALSEADVIAQTASQSFDISVW-QFLAAP 3932 (4334)
T ss_pred ccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHH-----hcCCCccceEEEecCCchhHHHH-HHHHHH
Confidence 111122346789999999999999999999999999998887766 56789999999999999999884 889999
Q ss_pred hCCCEEEEeCC---cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCC
Q 037622 272 SLGPSVVVMRR---FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP 348 (560)
Q Consensus 272 ~~G~~~v~~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~ 348 (560)
..|+++++.+. .++..+++.++++++|++.++|++++.++.. ....+++||.+++|||++++++.++|.+.+|
T Consensus 3933 ~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~----~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~ 4008 (4334)
T PRK05691 3933 LFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAE----DRQALDGLRWMLPTGEAMPPELARQWLQRYP 4008 (4334)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhh----ccccCCCceEEEecCCcCCHHHHHHHHHhCC
Confidence 99999998874 5789999999999999999999999988754 2335778999999999999999999999988
Q ss_pred CCeeecccchhhcccccccCCCCCC--CCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhh
Q 037622 349 HVDFIQGYGMTESTAVGTRGFNTKK--FSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT 426 (560)
Q Consensus 349 ~~~i~~~YG~tE~~~~~~~~~~~~~--~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~ 426 (560)
+++++|.||+||++..++....... .....++|+|++++++.|+| +.++++|.|..|||+|+|+++++||+++|+.|
T Consensus 4009 ~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t 4087 (4334)
T PRK05691 4009 QIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAGTGVGRGYVGDPLRT 4087 (4334)
T ss_pred CCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEEC-CCCCCCCCCCceEEEEecccccccccCCcccc
Confidence 9999999999999987654332221 22345799999999999999 78999999999999999999999999999999
Q ss_pred hhccC-------CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceE
Q 037622 427 MSTID-------KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIP 499 (560)
Q Consensus 427 ~~~~~-------~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~ 499 (560)
.+.|. +++||+|||+|++++||.+.++||+|++||++|++|++.|||+.|.++|+|.+++|+... ...++.+
T Consensus 4088 ~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~~-~~~~~~l 4166 (4334)
T PRK05691 4088 ALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQE-GVNGKHL 4166 (4334)
T ss_pred hhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEec-CCCCcEE
Confidence 98883 357999999999999999999999999999999999999999999999999998886543 4456788
Q ss_pred EEEEEecCCCCC---CHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 500 VAFVVRRDGSTL---TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 500 ~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
+++++...+... ..++++++++++||.|++|..++++++||+|++|||||++|++.
T Consensus 4167 ~a~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691 4167 VGYLVPHQTVLAQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred EEEEeCCcccccchHHHHHHHHHHHhhCChhhcCcceeecccCCCCCCCcccHhhcCCC
Confidence 999987655322 24679999999999999999999999999999999999999763
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-62 Score=518.11 Aligned_cols=486 Identities=27% Similarity=0.397 Sum_probs=399.8
Q ss_pred CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHH
Q 037622 53 HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEI 132 (560)
Q Consensus 53 ~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l 132 (560)
.++++|+++..+++.+||+||.++++++|++|.+ .|+++|++|+++++|+++++++++||+++|++++++++.++.+++
T Consensus 10 ~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~-~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~~~l 88 (511)
T PRK13391 10 TPDKPAVIMASTGEVVTYRELDERSNRLAHLFRS-LGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAEA 88 (511)
T ss_pred CCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccccCHHHH
Confidence 5678999875557899999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEEeeccchHHhhhcCC-----CCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCCCCCCEEEE
Q 037622 133 KKQVTLCKTKISLAFTIYENVDKLRSWGT-----TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAI 207 (560)
Q Consensus 133 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 207 (560)
.++++.+++ ++++++............ ...+...... .......+.+.....+. ....+.++.+++
T Consensus 89 ~~~l~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~a~i 159 (511)
T PRK13391 89 AYIVDDSGA--RALITSAAKLDVARALLKQCPGVRHRLVLDGDG----ELEGFVGYAEAVAGLPA---TPIADESLGTDM 159 (511)
T ss_pred HHHHhccCC--cEEEEchhhHHHHHHHHhcCCCceEEEEecCCC----CCcccccHHHHhcCCCC---CCCCCcccccEE
Confidence 999999999 999998776554432211 1222222110 01122233333222111 111234467899
Q ss_pred EcCCCCCCCchhhhh--hhHHHHHHH---HHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC
Q 037622 208 LYSSGTTGASKGAEL--THGNFIAAV---ELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR 282 (560)
Q Consensus 208 ~~TSGTTG~PK~v~~--t~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 282 (560)
+|||||||.||+|.+ +|.+..... ..... ...+...+++++..|++|.+++. ..+.++..|+++++.+.
T Consensus 160 l~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~p~~h~~~~~-~~~~~~~~g~~~~~~~~ 233 (511)
T PRK13391 160 LYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQR-----LWGFRSDMVYLSPAPLYHSAPQR-AVMLVIRLGGTVIVMEH 233 (511)
T ss_pred EECCCCCCCCCEEEEccccchhhhhhHHHHHHHH-----hcCCCCCCeEEEcCCHHHHHHHH-HHHHHHHcCceEEECCC
Confidence 999999999999995 465543322 11222 34567889999999999998885 66778999999999988
Q ss_pred cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhc
Q 037622 283 FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTES 361 (560)
Q Consensus 283 ~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~ 361 (560)
+++..+++.++++++|++.++|+++..+.+.... ....+++++|.+++||+++++++.+.+.+.+ +..+++.||+||+
T Consensus 234 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~-g~~v~~~YG~tE~ 312 (511)
T PRK13391 234 FDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWW-GPIIHEYYAATEG 312 (511)
T ss_pred CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHc-CCceeeeeccccc
Confidence 9999999999999999999999999988764211 2234578999999999999999999999988 7889999999999
Q ss_pred ccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCC-CceecCc
Q 037622 362 TAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKE-GWLHTGD 440 (560)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~-~~~~TGD 440 (560)
+.++.... ......++++|.|+++ .++++| +++.+++.|+.|||+++|+ ++.||+++++.+...+..+ +||+|||
T Consensus 313 ~~~~~~~~-~~~~~~~~~vG~~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD 388 (511)
T PRK13391 313 LGFTACDS-EEWLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGD 388 (511)
T ss_pred cceEEecC-ccccccCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCC
Confidence 87654322 1123456789999999 689998 6789999999999999999 8889999999998887654 9999999
Q ss_pred eEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCC---CCHHHHH
Q 037622 441 IAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGST---LTEAAVI 517 (560)
Q Consensus 441 ~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~ 517 (560)
+|+++++|.+++.||.+|++|.+|++|++.+||+++.++|.|.+++|++.++...++.+++++++..+.. ...++++
T Consensus 389 ~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 468 (511)
T PRK13391 389 IGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELI 468 (511)
T ss_pred EEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988899999888765432 2347899
Q ss_pred HHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 518 DYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 518 ~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
++++++++.++.|..|++++++|+|++||++|+.|++.+.++
T Consensus 469 ~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~~ 510 (511)
T PRK13391 469 AFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWGN 510 (511)
T ss_pred HHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhcc
Confidence 999999999999999999999999999999999999998764
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=536.10 Aligned_cols=526 Identities=21% Similarity=0.294 Sum_probs=395.1
Q ss_pred CCCCCCCCCCCceeccCC-C---CCCCCCCCCCCCHHHHHhccCC--CCceEEEECCC--C--ceecHHHHHHHHHHHHH
Q 037622 13 INTSQWYSPETGIYHSKH-P---SVNLPANDSLLDVDSFIFSHKH--NGRTALVDSLS--G--YSISYPQLFPLVQSVAS 82 (560)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~--~--~~~Ty~el~~~v~~la~ 82 (560)
..|.+|-.++++.+.... + .-++|......|+.+++.+.++ ++++|+++... + +++||+||.++++++|+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~ 95 (624)
T PRK12582 16 FRPLNWKPPDISVERRADGSIVIKSRHPLGPYPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQ 95 (624)
T ss_pred CCccccCCCceEEEEcCCceEEEecCCCCCCcccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHH
Confidence 346788888877764421 1 2223322345789998877654 56899886421 2 68999999999999999
Q ss_pred HHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCH-----HHHHHHHHhcCCceEEEEeeccc-hHH-
Q 037622 83 GLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSV-----SEIKKQVTLCKTKISLAFTIYEN-VDK- 155 (560)
Q Consensus 83 ~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~~~v~~~~~~-~~~- 155 (560)
+|.+ +|+++||+|+++++|+++++++++||+++|++++|++|.++. +++.++++.+++ +++++++.. ...
T Consensus 96 ~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~ 172 (624)
T PRK12582 96 ALLD-LGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKP--RVVFAQSGAPFARA 172 (624)
T ss_pred HHHH-cCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCC--cEEEecCHHHHHHH
Confidence 9998 799999999999999999999999999999999999999885 899999999999 888887542 111
Q ss_pred hhhc--CCCCEEEecCCCcccccCCCcccHHHhhcccCCC---CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHH
Q 037622 156 LRSW--GTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDL---VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAA 230 (560)
Q Consensus 156 ~~~~--~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~ 230 (560)
+... ....++.+.... .......+.++....... .......++++++|+|||||||.||+|+++|.++...
T Consensus 173 ~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~ 248 (624)
T PRK12582 173 LAALDLLDVTVVHVTGPG----EGIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCAN 248 (624)
T ss_pred HHhhhhcCceEEEEcCCC----cccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHH
Confidence 1111 112344433211 011123344443322111 1112346789999999999999999999999999887
Q ss_pred HHHHHHhhhcccccCC---CCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC-cCH---HHHHHHHHHhCcceeccC
Q 037622 231 VELFVRFEASQYEYLS---SEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR-FEA---SEMLKVIDKYGVTHFPVV 303 (560)
Q Consensus 231 ~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~---~~~~~~l~~~~~t~l~~~ 303 (560)
....... .... ..++++.++|++|.+|+...++.++..|+++++.+. +++ ..+++.++++++|+++++
T Consensus 249 ~~~~~~~-----~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~v 323 (624)
T PRK12582 249 IAMQEQL-----RPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNV 323 (624)
T ss_pred HHHHHHh-----ccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEecc
Confidence 6655431 2222 257999999999999987777889999999998763 333 456777889999999999
Q ss_pred cHHHHHHHHhhhc---cCCCCCCccceeecccCCCCHHHHHHHHHhC----C-CCeeecccchhhcccccccCCCCCCCC
Q 037622 304 PPILMALTKAAKG---LCGNSLKSLKQVSSGAAPANSKIIEDFVGAF----P-HVDFIQGYGMTESTAVGTRGFNTKKFS 375 (560)
Q Consensus 304 P~~~~~l~~~~~~---~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~----~-~~~i~~~YG~tE~~~~~~~~~~~~~~~ 375 (560)
|+++..|++.... .....+++||.+++||+++++++.+++.+.+ + ++++++.||+||++.++..... ...
T Consensus 324 P~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~--~~~ 401 (624)
T PRK12582 324 PAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHW--DTE 401 (624)
T ss_pred CHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccC--CCC
Confidence 9999988754111 1123467899999999999999999998863 1 3689999999999876552221 124
Q ss_pred cccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEE-c---cCCcEE
Q 037622 376 KYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYF-D---EDGYLY 451 (560)
Q Consensus 376 ~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~-~---~~g~l~ 451 (560)
+.+++|+|+||+++++++ .|+.|||+|+|++++.||+++|+.+.+.|+.+|||+|||+|++ | ++|+++
T Consensus 402 ~~~svG~p~pg~~v~i~~--------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~ 473 (624)
T PRK12582 402 RVGLIGLPLPGVELKLAP--------VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLI 473 (624)
T ss_pred CCCCCCcCCCCcEEEEcc--------CCCceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceE
Confidence 578999999999999864 4778999999999999999999999999988999999999998 4 468999
Q ss_pred EEccccceeee-cceecChHHHH--HHHhcCCCcccEEEEcccCCCCCceEEEE------EEecCCC----CCCHHHHHH
Q 037622 452 IVDRLKEVIKY-NGYQISPADLE--TVLICHPEILDVAVTGAMDKVLGEIPVAF------VVRRDGS----TLTEAAVID 518 (560)
Q Consensus 452 ~~GR~~d~i~~-~G~~v~~~~IE--~~l~~~~~v~~~~v~~~~~~~~~~~~~~~------v~~~~~~----~~~~~~l~~ 518 (560)
++||+||+|++ +|++|++.+|| .++.+||.|.+++|++.+++..|+.++.. ++..++. ..+.+++.+
T Consensus 474 i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (624)
T PRK12582 474 FDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLA 553 (624)
T ss_pred EeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCcEEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHH
Confidence 99999999997 89999998885 68899999999999999887755443211 1111111 113355666
Q ss_pred HHHhccCCCC--------CcceEEEecCCC------CCCCCcchHHHHHHHHhccC
Q 037622 519 YLAQRVAPYK--------KVRRVVFTKSIP------KSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 519 ~~~~~l~~~~--------~p~~i~~~~~lP------~t~~GKi~r~~L~~~~~~~~ 560 (560)
+++++|..++ +|+++++++++| +|++||+.|+...+.|+++|
T Consensus 554 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i 609 (624)
T PRK12582 554 ILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALV 609 (624)
T ss_pred HHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHH
Confidence 6655555444 999999999887 55778899999999988764
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-63 Score=519.32 Aligned_cols=450 Identities=18% Similarity=0.189 Sum_probs=347.8
Q ss_pred cCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccc---------hHHhhhcCCCCEEEecCC
Q 037622 100 LPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYEN---------VDKLRSWGTTPVVAVPEN 170 (560)
Q Consensus 100 ~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~---------~~~~~~~~~~~vi~~~~~ 170 (560)
++|++++++++|||+++|++++|+++.++.+++.++++.+++ +++++++.. ...+........+.+...
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 78 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGA--KGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAA 78 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCc--eEEEecCceeeCCeeecchhhhhhcccceEEEEecc
Confidence 589999999999999999999999999999999999999999 999987642 111111111122222111
Q ss_pred Ccc-ccc-CCCcccHHHhhcccC-------CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcc
Q 037622 171 LVN-DFK-EGRFSDFHKLIAGKF-------DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQ 241 (560)
Q Consensus 171 ~~~-~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~ 241 (560)
... ... ......+.+++.... .........++++++|+|||||||.||||++||.++..+......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~----- 153 (499)
T PLN03051 79 GEPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWA----- 153 (499)
T ss_pred CcccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHH-----
Confidence 000 000 011223444432110 011111235689999999999999999999999998776544433
Q ss_pred cccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC-cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhh-ccCC
Q 037622 242 YEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR-FEASEMLKVIDKYGVTHFPVVPPILMALTKAAK-GLCG 319 (560)
Q Consensus 242 ~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~-~~~~ 319 (560)
...+..+|++++.+|++|..++. .++.++..|+++++.+. +++..+++.++++++|++.++|+++..|++... ....
T Consensus 154 ~~~~~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~ 232 (499)
T PLN03051 154 HMDIQPGDVVCWPTNLGWMMGPW-LLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEG 232 (499)
T ss_pred hcCCCCCCEEEEccCcceeeehH-HHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcccccc
Confidence 35678899999999999999974 78889999999998874 788999999999999999999999999876421 1234
Q ss_pred CCCCccceeecccCCCCHHHHHHHHHhCC-CCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCc
Q 037622 320 NSLKSLKQVSSGAAPANSKIIEDFVGAFP-HVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGC 398 (560)
Q Consensus 320 ~~l~~lr~~~~~g~~~~~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~ 398 (560)
.++++||.+++||+++++++.+++.+.++ ++++++.||+||++..+..... ....+.+++|+|.++++++|+| ++++
T Consensus 233 ~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~ivd-~~g~ 310 (499)
T PLN03051 233 LDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTL-LQPQAPGAFSTASLGTRFVLLN-DNGV 310 (499)
T ss_pred CCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccc-cCCCCCccccCCCCCceEEEEC-CCCC
Confidence 56789999999999999999987777431 4789999999998754332211 1123467899999999999999 6788
Q ss_pred cCCCC--CcceEEEecccc--hhhhcCCchhhhhccCC--------CCceecCceEEEccCCcEEEEccccceeeeccee
Q 037622 399 FLPPG--STGELWLRGPGT--MKEYINNADATMSTIDK--------EGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQ 466 (560)
Q Consensus 399 ~~~~g--~~Gel~v~~~~~--~~gy~~~~~~~~~~~~~--------~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~ 466 (560)
+++.| +.|||+++||.+ +.||++++ .+...+++ .+||+|||+|++|+||+++++||.||+||++|++
T Consensus 311 ~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~ 389 (499)
T PLN03051 311 PYPDDQPCVGEVALAPPMLGASDRLLNAD-HDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIK 389 (499)
T ss_pred CCCCCCCcceEEEEecCcCCCCccccCCc-ccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEE
Confidence 99888 479999999976 58999765 33322222 2278999999999999999999999999999999
Q ss_pred cChHHHHHHHhc-CCCcccEEEEcccCCCCC-ceEEEEE---EecCCC-CCCHHHHHHHH----HhccCCCCCcceEEEe
Q 037622 467 ISPADLETVLIC-HPEILDVAVTGAMDKVLG-EIPVAFV---VRRDGS-TLTEAAVIDYL----AQRVAPYKKVRRVVFT 536 (560)
Q Consensus 467 v~~~~IE~~l~~-~~~v~~~~v~~~~~~~~~-~~~~~~v---~~~~~~-~~~~~~l~~~~----~~~l~~~~~p~~i~~~ 536 (560)
|+|.|||++|.+ ||.|.+++|++.+++..| +.++++| ++.++. ..+.++++++| +++|+++++|..|+++
T Consensus 390 v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~v 469 (499)
T PLN03051 390 TSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIV 469 (499)
T ss_pred CCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhhcCCccCCceEEEc
Confidence 999999999996 999999999999999888 6788888 766654 35667777666 4557777777789999
Q ss_pred cCCCCCCCCcchHHHHHHHHhccC
Q 037622 537 KSIPKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 537 ~~lP~t~~GKi~r~~L~~~~~~~~ 560 (560)
++||+|++||++|++|++.+.+++
T Consensus 470 ~~lP~t~~GKi~r~~L~~~~~~~~ 493 (499)
T PLN03051 470 PELPRNASNKLLRRVLRDQLKKEL 493 (499)
T ss_pred CCCCCCCCccHHHHHHHHHHHHhh
Confidence 999999999999999999887653
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=562.70 Aligned_cols=491 Identities=23% Similarity=0.284 Sum_probs=397.5
Q ss_pred CCHHHHHhccCC---CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 42 LDVDSFIFSHKH---NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 42 ~~~~~~~~~~~~---~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
.++.+.+.++++ +++.|+.+. +++++||+||+++++++|+.|.+ |+++||+|+++++|+++++++++||+++|+
T Consensus 631 ~~~~~~l~~~~~~~~~~~~ai~~~-~~~~~Ty~el~~~~~~lA~~L~~--g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 707 (1140)
T PRK06814 631 RTLFEALIEAAKIHGFKKLAVEDP-VNGPLTYRKLLTGAFVLGRKLKK--NTPPGENVGVMLPNANGAAVTFFALQSAGR 707 (1140)
T ss_pred CCHHHHHHHHHHHcCCCCeEeECC-CCCccCHHHHHHHHHHHHHHHHh--cCCCCCeEEEEcCCchHHHHHHHHHHHCCC
Confidence 455555555443 235677653 36899999999999999999954 999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhh------hc-CCCCEEEecCCCcccccCCCcccHHHhhcccC
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLR------SW-GTTPVVAVPENLVNDFKEGRFSDFHKLIAGKF 191 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~------~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (560)
+++|+++.++.+++.++++.+++ +++++++....... .. ....++.+++... . ......+........
T Consensus 708 v~v~l~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~--~~~~~~~~~~~~~~~ 782 (1140)
T PRK06814 708 VPAMINFSAGIANILSACKAAQV--KTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRA-Q--IGLADKIKGLLAGRF 782 (1140)
T ss_pred EEEEcCCCCCHHHHHHHHHHcCC--CEEEecHHHHhhhcchhHHHHhccCceEEEehHhhc-c--CChHHHHHHHhhccC
Confidence 99999999999999999999999 99998875443211 11 1123444332110 0 000001111111111
Q ss_pred CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHh
Q 037622 192 DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLL 271 (560)
Q Consensus 192 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l 271 (560)
+....+...++|+++++|||||||.||+|+++|+++......... ...++++|++++.+|++|.+++...++.++
T Consensus 783 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~-----~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l 857 (1140)
T PRK06814 783 PLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAA-----RIDFSPEDKVFNALPVFHSFGLTGGLVLPL 857 (1140)
T ss_pred CccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHH-----hhCCCCcCEEEEecchHHHHHHHHHHHHHH
Confidence 111112356799999999999999999999999999888777665 466788999999999999999977888999
Q ss_pred hCCCEEEEeCC-cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCC
Q 037622 272 SLGPSVVVMRR-FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHV 350 (560)
Q Consensus 272 ~~G~~~v~~~~-~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~ 350 (560)
..|+++++.+. .+...+.+.++++++|++.++|++++.+.+. ....+++++|.+++||+++++++.+.+.+.+ ++
T Consensus 858 ~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~---~~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~ 933 (1140)
T PRK06814 858 LSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARY---AHPYDFRSLRYVFAGAEKVKEETRQTWMEKF-GI 933 (1140)
T ss_pred HcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhh---cccccccceeEEEEcCCcCCHHHHHHHHHHh-CC
Confidence 99999998764 5677888999999999999999999998764 2345678999999999999999999999998 89
Q ss_pred eeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhcc
Q 037622 351 DFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI 430 (560)
Q Consensus 351 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~ 430 (560)
++++.||+||++..++.... ...+.+++|+|+|++++++.+.+ + .|+.|||+++|++++.||+++++......
T Consensus 934 ~~~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~g~~~~~~~~~-~----~~~~Gel~v~g~~~~~gY~~~~~~~~~~~ 1006 (1140)
T PRK06814 934 RILEGYGVTETAPVIALNTP--MHNKAGTVGRLLPGIEYRLEPVP-G----IDEGGRLFVRGPNVMLGYLRAENPGVLEP 1006 (1140)
T ss_pred cEEeccccccccceEEecCC--CCCCCCcCCccCCCCeEEEeecC-C----CCCceEEEEeCCCcchhhcCCCCCCcccc
Confidence 99999999999887654432 22356799999999999998732 1 36789999999999999999765433222
Q ss_pred CCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCC
Q 037622 431 DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGST 510 (560)
Q Consensus 431 ~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 510 (560)
..+|||+|||++++|+||++++.||.||+||++|++|+|.|||+++.+++.+.+++|++.+++..|+.+++++. +..
T Consensus 1007 ~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~---~~~ 1083 (1140)
T PRK06814 1007 PADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT---ASD 1083 (1140)
T ss_pred CCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc---CCC
Confidence 35899999999999999999999999999999999999999999999999999999999999988888776654 234
Q ss_pred CCHHHHHHHHHhc-cCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 511 LTEAAVIDYLAQR-VAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 511 ~~~~~l~~~~~~~-l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
.+.+++++++++. ++++++|..+++++++|+|++||++|++|++.+.+.
T Consensus 1084 ~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 1133 (1140)
T PRK06814 1084 ATRAAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEA 1133 (1140)
T ss_pred cCHHHHHHHHHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHh
Confidence 5678899999875 999999999999999999999999999999987654
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-62 Score=515.53 Aligned_cols=501 Identities=26% Similarity=0.331 Sum_probs=398.6
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.+..+.|.+.++ ++++|++++ +..+||+||.++++++|.+|.+ .|+++||+|+|+++|+++++++++||+++|++
T Consensus 18 ~~~~~~~~~~~~~~~~~~a~~~~--~~~~ty~~L~~~~~~~a~~L~~-~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~ 94 (545)
T PRK08162 18 LTPLSFLERAAEVYPDRPAVIHG--DRRRTWAETYARCRRLASALAR-RGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAV 94 (545)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC--CeEEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCchHHHHHHHHHHHhCcE
Confidence 455666655553 569999987 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC----CCCEEEecCCCccc--ccCCCcccHHHhhcccCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG----TTPVVAVPENLVND--FKEGRFSDFHKLIAGKFDL 193 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~----~~~vi~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 193 (560)
++|+++.++.+++..+++.+++ +.++++.+....+.+.. ....+.++...... ...-...++.+......+.
T Consensus 95 ~vpl~~~~~~~~~~~~l~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (545)
T PRK08162 95 LNTLNTRLDAASIAFMLRHGEA--KVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGDPD 172 (545)
T ss_pred EeccccccChHHHHHHHHhCCC--eEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhccCCcc
Confidence 9999999999999999999999 99999887665544321 12233332211000 0001122344444332222
Q ss_pred CCC-CCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhh
Q 037622 194 VER-PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLS 272 (560)
Q Consensus 194 ~~~-~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~ 272 (560)
... ...+..++++++|||||||.||+|+++|.++......... ...+..++++++.+|++|..++...++..+
T Consensus 173 ~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~-----~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~- 246 (545)
T PRK08162 173 FAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNIL-----AWGMPKHPVYLWTLPMFHCNGWCFPWTVAA- 246 (545)
T ss_pred ccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHH-----hcCCCCCCeeEeccCcHhhhhHHHHHHHHH-
Confidence 111 1224457899999999999999999999987766554433 345677889999999999999865555445
Q ss_pred CCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCee
Q 037622 273 LGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDF 352 (560)
Q Consensus 273 ~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i 352 (560)
.|++.++...+++..+++.++++++|++.++|+++..|++. .......+.+.+.++++|+.+++.+.+.+.+. ++++
T Consensus 247 ~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~ 323 (545)
T PRK08162 247 RAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINA-PAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDL 323 (545)
T ss_pred HccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhC-ccccccCCccceEEEECCCCCCHHHHHHHHHh--CCce
Confidence 45566666778999999999999999999999999999875 33223345566777899999999999998874 8999
Q ss_pred ecccchhhcccccccCCCCCC---------CCcccccccccCC-eEEEEEeCCCCccCCC-C-CcceEEEecccchhhhc
Q 037622 353 IQGYGMTESTAVGTRGFNTKK---------FSKYFSVGLLAPN-IQAKVVDWVNGCFLPP-G-STGELWLRGPGTMKEYI 420 (560)
Q Consensus 353 ~~~YG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~p~-~~~~v~d~~~~~~~~~-g-~~Gel~v~~~~~~~gy~ 420 (560)
++.||+||+++.+..+..... .....+.|.+.+. ..++++|++++.+++. | +.|||+++|+.++.||+
T Consensus 324 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~ 403 (545)
T PRK08162 324 THVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYL 403 (545)
T ss_pred eecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhc
Confidence 999999998654443321110 0112456666653 3578888778888876 3 46999999999999999
Q ss_pred CCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEE
Q 037622 421 NNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPV 500 (560)
Q Consensus 421 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 500 (560)
++++.+...| .++||+|||+|++|++|.++++||.+|++|.+|++|++.+||+.|.++|+|.+++|++.++...++.++
T Consensus 404 ~~~~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~ 482 (545)
T PRK08162 404 KNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPC 482 (545)
T ss_pred CChhhhHHHh-hCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEE
Confidence 9999999888 578999999999999999999999999999999999999999999999999999999999888788899
Q ss_pred EEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 501 AFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 501 ~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
+++++.++...+.+++++++++.|+.+++|..+++ +++|+|++||++|+.|++.+..
T Consensus 483 ~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gK~~r~~l~~~~~~ 539 (545)
T PRK08162 483 AFVELKDGASATEEEIIAHCREHLAGFKVPKAVVF-GELPKTSTGKIQKFVLREQAKS 539 (545)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhcccccCCcEEEe-cccCCCCCcCCcHHHHHHHHhh
Confidence 99998877667888999999999999999998865 6899999999999999998653
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-62 Score=507.70 Aligned_cols=440 Identities=25% Similarity=0.351 Sum_probs=375.1
Q ss_pred CCCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHH
Q 037622 52 KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSE 131 (560)
Q Consensus 52 ~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 131 (560)
..++++|+++. ++.+||+||.++++++|..|.+ .|+++|++|+++++|+++++++++||+++|++++|+++..+.++
T Consensus 15 ~~~~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~-~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~ 91 (458)
T PRK09029 15 VRPQAIALRLN--DEVLTWQQLCARIDQLAAGFAQ-QGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLPQPL 91 (458)
T ss_pred hCCCceeeecC--CcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCCCCCHHH
Confidence 46779999976 7899999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCC
Q 037622 132 IKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSS 211 (560)
Q Consensus 132 l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 211 (560)
+..+++.+++ ++++++.+... .... ... ... ...........++++++++|||
T Consensus 92 ~~~~~~~~~~--~~~i~~~~~~~-~~~~--------~~~-----------~~~-----~~~~~~~~~~~~~~~a~i~~TS 144 (458)
T PRK09029 92 LEELLPSLTL--DFALVLEGENT-FSAL--------TSL-----------HLQ-----LVEGAHAVAWQPQRLATMTLTS 144 (458)
T ss_pred HHHHHHhcCC--CEEEEcCcccc-hhhc--------ccc-----------ccc-----cccccCcccCCCCCeEEEEECC
Confidence 9999999999 88877654321 1000 000 000 0000112234678999999999
Q ss_pred CCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHH
Q 037622 212 GTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKV 291 (560)
Q Consensus 212 GTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 291 (560)
||||.||+|.++|+++...+..... ...+..+++++..+|++|.+++. .++.++..|+++++.+. ..+++.
T Consensus 145 GTTG~PKgv~~s~~~~~~~~~~~~~-----~~~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~G~~v~~~~~---~~~~~~ 215 (458)
T PRK09029 145 GSTGLPKAAVHTAQAHLASAEGVLS-----LMPFTAQDSWLLSLPLFHVSGQG-IVWRWLYAGATLVVRDK---QPLEQA 215 (458)
T ss_pred CCCCCCCEEEEeHHHHHHHHHHHhh-----cCCCCccceEEEecCcHhhhhhH-HHHHHHhCCceEEeCCh---HHHHHH
Confidence 9999999999999999988877665 46678899999999999999984 66778999999998764 456666
Q ss_pred HHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCC
Q 037622 292 IDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNT 371 (560)
Q Consensus 292 l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~ 371 (560)
+ .++|.+..+|+++..+.... . . ..++|.+++||+++++.+.+.+.+. +.++++.||+||++...+.....
T Consensus 216 i--~~~t~~~~~P~~~~~l~~~~-~--~--~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~~ 286 (458)
T PRK09029 216 L--AGCTHASLVPTQLWRLLDNR-S--E--PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTEMASTVCAKRAD 286 (458)
T ss_pred H--hhceeeecChHHHHHHHhcc-c--c--CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccccccccCcceeccCCC
Confidence 6 37999999999999987652 1 1 3479999999999999999998864 89999999999998765433211
Q ss_pred CCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEE
Q 037622 372 KKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLY 451 (560)
Q Consensus 372 ~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~ 451 (560)
...++|+|++++.+++++ |||+++|+.++.||+++++.+.... .+|||+|||+|+++ ||.++
T Consensus 287 ----~~~~~G~~~~~~~~~i~~------------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-~g~l~ 348 (458)
T PRK09029 287 ----GLAGVGSPLPGREVKLVD------------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-NGELT 348 (458)
T ss_pred ----CCCCCCCCCCCCEEEEeC------------CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-CCEEE
Confidence 235699999999999986 8999999999999999998876443 67999999999999 99999
Q ss_pred EEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcc
Q 037622 452 IVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVR 531 (560)
Q Consensus 452 ~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~ 531 (560)
+.||.+|+||.+|.+|+|.+||+.|.++|+|.+++|++.+++..++.++++|+... ..+.++++++|+++|++|++|.
T Consensus 349 ~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~~~~~~l~~~~~~~l~~~~~P~ 426 (458)
T PRK09029 349 ILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS--EAAVVNLAEWLQDKLARFQQPV 426 (458)
T ss_pred EecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc--ccCHHHHHHHHHhhchhccCCe
Confidence 99999999999999999999999999999999999999999998999999988763 3577899999999999999999
Q ss_pred eEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 532 RVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 532 ~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
.+++++++|+|.+||++|+.|++++.+.
T Consensus 427 ~~~~~~~~p~t~~gKi~r~~L~~~~~~~ 454 (458)
T PRK09029 427 AYYLLPPELKNGGIKISRQALKEWVAQQ 454 (458)
T ss_pred EEEEecccccCcCCCcCHHHHHHHHHhc
Confidence 9999999999999999999999998765
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-62 Score=521.80 Aligned_cols=495 Identities=23% Similarity=0.307 Sum_probs=394.1
Q ss_pred CCCCHHHHHhccCCCC-ceEEEECCCC--ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHh
Q 037622 40 SLLDVDSFIFSHKHNG-RTALVDSLSG--YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYL 116 (560)
Q Consensus 40 ~~~~~~~~~~~~~~~~-~~a~~~~~~~--~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~ 116 (560)
+..++.+++...++.. +.++++.... +.+||+||+++++++|.+|.+ +|+++||+|+++++|+++++++++||+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~-~gi~~gd~V~l~~~n~~~~~~~~lA~~~~ 97 (579)
T PRK09192 19 DFPTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLA-LGLKPGDRVALIAETDGDFVEAFFACQYA 97 (579)
T ss_pred chhhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCchhHHHHHHHHHHc
Confidence 3468999988887654 5566654322 679999999999999999999 79999999999999999999999999999
Q ss_pred CCeEeccCCCCC-------HHHHHHHHHhcCCceEEEEeeccchHHhhhcCC-CCEEEecCCCcccccCCCcccHHHhhc
Q 037622 117 GAIVIPMNPLLS-------VSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-TPVVAVPENLVNDFKEGRFSDFHKLIA 188 (560)
Q Consensus 117 G~~~v~l~~~~~-------~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~~~~~~~ 188 (560)
|++++|+++..+ .+++.++++.+++ +++++++.....+..... ...+.. ..+.++..
T Consensus 98 G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~--~~il~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 162 (579)
T PRK09192 98 GLVPVPLPLPMGFGGRESYIAQLRGMLASAQP--AAIITPDELLPWVNEATHGNPLLHV-------------LSHAWFKA 162 (579)
T ss_pred CCeeEeccCCcccccchHHHHHHHHHHHhcCC--CEEEeChHHHHHHHHhhccccccce-------------eehhhhcc
Confidence 999999986443 5899999999999 999988876655543221 110000 01111111
Q ss_pred ccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHH
Q 037622 189 GKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFAL 268 (560)
Q Consensus 189 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 268 (560)
........+...++++++++|||||||.||+|.++|.++...+...... ...+.++|+++.++|++|.+++...++
T Consensus 163 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~g~~~~~~ 238 (579)
T PRK09192 163 LPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHD----GLKVRPGDRCVSWLPFYHDMGLVGFLL 238 (579)
T ss_pred cCCCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhh----cccCCCCCeEEEeCCCCCcchhHHHHH
Confidence 1111112233467899999999999999999999999999877665531 356788999999999999999976777
Q ss_pred HHhhCCCEEEEeCC----cCHHHHHHHHHHhCcceeccCcHHHHHHHHhh--hccCCCCCCccceeecccCCCCHHHHHH
Q 037622 269 GLLSLGPSVVVMRR----FEASEMLKVIDKYGVTHFPVVPPILMALTKAA--KGLCGNSLKSLKQVSSGAAPANSKIIED 342 (560)
Q Consensus 269 ~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~--~~~~~~~l~~lr~~~~~g~~~~~~~~~~ 342 (560)
.++..|+++++.+. .++..+++.+.++++++++..|..+..+.... ......+++++|.+++||+++++.+.+.
T Consensus 239 ~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~ 318 (579)
T PRK09192 239 TPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQ 318 (579)
T ss_pred HHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHH
Confidence 88899999877652 36889999999999997766554444443221 1122346789999999999999999999
Q ss_pred HHHhCCC-----CeeecccchhhcccccccCCCCCC--------------------------CCcccccccccCCeEEEE
Q 037622 343 FVGAFPH-----VDFIQGYGMTESTAVGTRGFNTKK--------------------------FSKYFSVGLLAPNIQAKV 391 (560)
Q Consensus 343 ~~~~~~~-----~~i~~~YG~tE~~~~~~~~~~~~~--------------------------~~~~~~~G~~~p~~~~~v 391 (560)
+.+.++. ..+++.||+||++..++....... .....++|.|+|+++++|
T Consensus 319 ~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i 398 (579)
T PRK09192 319 FAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEI 398 (579)
T ss_pred HHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEE
Confidence 9988731 358999999999876554322110 011357899999999999
Q ss_pred EeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHH
Q 037622 392 VDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPAD 471 (560)
Q Consensus 392 ~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ 471 (560)
+| +++++++.|+.|||+++|+.++.||+++ +.+...+..++||+|||+|++ ++|+++++||.||+||++|++|+|.|
T Consensus 399 ~d-~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~e 475 (579)
T PRK09192 399 RN-EAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQD 475 (579)
T ss_pred EC-CCCCCCCCCCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHH
Confidence 99 5688999999999999999999999999 667777778899999999999 99999999999999999999999999
Q ss_pred HHHHHhcCCCcc--cEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccC-CCCCcceEEEec--CCCCCCCCc
Q 037622 472 LETVLICHPEIL--DVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVA-PYKKVRRVVFTK--SIPKSAAGK 546 (560)
Q Consensus 472 IE~~l~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~-~~~~p~~i~~~~--~lP~t~~GK 546 (560)
||++|.++|+|. +++|++.+++. ++.++++++...+...+.+++++++++.+. .++.|..++++. +||+|++||
T Consensus 476 IE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~~~~~~lP~t~~GK 554 (579)
T PRK09192 476 IEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEAAVELVPPHSLPRTSSGK 554 (579)
T ss_pred HHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCCceEEEeCCCCcCCCCCcc
Confidence 999999999998 89999988875 557888887766555667889999999875 678888888875 899999999
Q ss_pred chHHHHHHHHhc
Q 037622 547 VLRRELRKFLTS 558 (560)
Q Consensus 547 i~r~~L~~~~~~ 558 (560)
++|++|++.+..
T Consensus 555 v~R~~l~~~~~~ 566 (579)
T PRK09192 555 LSRAKAKKRYLS 566 (579)
T ss_pred hhHHHHHHHHHc
Confidence 999999998865
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-61 Score=514.31 Aligned_cols=492 Identities=22% Similarity=0.305 Sum_probs=374.4
Q ss_pred CHHHHHhccCC--CCceEEEECC-------CCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHH
Q 037622 43 DVDSFIFSHKH--NGRTALVDSL-------SGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLAL 113 (560)
Q Consensus 43 ~~~~~~~~~~~--~~~~a~~~~~-------~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~ 113 (560)
++.+++.+.+. ++++|+++.. ..+++||+||.++++++|.+|.+ +| .+||+|+|+++|++++++++|||
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~-~g-~~gd~V~l~~~n~~~~~~~~lA~ 79 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRR-HG-STGDRAVILAPQGLEYIVAFLGA 79 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHH-hC-CCCCEEEEEcCCcccHHHHHHHH
Confidence 45555555553 5689988532 13799999999999999999998 79 68999999999999999999999
Q ss_pred HHhCCeEeccCC---CCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC-------CCEEEecCCCcccccCCCcccH
Q 037622 114 LYLGAIVIPMNP---LLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-------TPVVAVPENLVNDFKEGRFSDF 183 (560)
Q Consensus 114 ~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-------~~vi~~~~~~~~~~~~~~~~~~ 183 (560)
+++|++++|+++ ..+.+++.++++.+++ +++++++.....+..... ..++..+..
T Consensus 80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~--~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 144 (578)
T PRK05850 80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSP--SVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL------------- 144 (578)
T ss_pred HHcCceEEecCCCCccchHHHHHHHHHhcCC--CEEEEcHHHHHHHHHHHhhcccccccceEeeccc-------------
Confidence 999999999997 4578999999999999 999998876655433110 111111110
Q ss_pred HHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhh-hcccccCCCCcEEEEecChhhHHh
Q 037622 184 HKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFE-ASQYEYLSSEAVFLAVLPMFHIYG 262 (560)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~g 262 (560)
+.... .........++++++++|||||||.||+|.++|.++..++....... .........++++++++|++|..|
T Consensus 145 -~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g 221 (578)
T PRK05850 145 -DLDSP--RGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMG 221 (578)
T ss_pred -ccccC--CccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCch
Confidence 00000 00111234568999999999999999999999999988776554311 000011356789999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCc----CHHHHHHHHHHhCcceeccCcHHHHHHHHh-h--hccCCCCCCccceeecccCCC
Q 037622 263 LSLFALGLLSLGPSVVVMRRF----EASEMLKVIDKYGVTHFPVVPPILMALTKA-A--KGLCGNSLKSLKQVSSGAAPA 335 (560)
Q Consensus 263 ~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~-~--~~~~~~~l~~lr~~~~~g~~~ 335 (560)
+...++.++..|+++++.++. ++..+++.++++++++. .+|+.+..+... . ......+++++|.+++||+++
T Consensus 222 ~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~ 300 (578)
T PRK05850 222 LVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERV 300 (578)
T ss_pred hHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCC
Confidence 977899999999999998742 68999999999999855 667665444322 0 111234567899999999999
Q ss_pred CHHHHHHHHHhCC-----CCeeecccchhhcccccccCCCCCC-----------------------CCcccccccccCCe
Q 037622 336 NSKIIEDFVGAFP-----HVDFIQGYGMTESTAVGTRGFNTKK-----------------------FSKYFSVGLLAPNI 387 (560)
Q Consensus 336 ~~~~~~~~~~~~~-----~~~i~~~YG~tE~~~~~~~~~~~~~-----------------------~~~~~~~G~~~p~~ 387 (560)
++++.++|.+.|+ +..+++.||+||++..+........ .....++|.|. +.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~ 379 (578)
T PRK05850 301 HPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SP 379 (578)
T ss_pred CHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CC
Confidence 9999999988773 3579999999998754433211100 00112345543 57
Q ss_pred EEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccC-----------CCCceecCceEEEccCCcEEEEccc
Q 037622 388 QAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID-----------KEGWLHTGDIAYFDEDGYLYIVDRL 456 (560)
Q Consensus 388 ~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~~g~l~~~GR~ 456 (560)
+++++|++++.+++.|+.|||+++|++++.||+++|+.+.+.|. .++||+|||+|+++ +|+++++||+
T Consensus 380 ~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~ 458 (578)
T PRK05850 380 TVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRI 458 (578)
T ss_pred EEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEccc
Confidence 89999987789999999999999999999999999999998874 25799999999997 9999999999
Q ss_pred cceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCH------HHHHHHHHhccCC--CC
Q 037622 457 KEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTE------AAVIDYLAQRVAP--YK 528 (560)
Q Consensus 457 ~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~~~~~l~~--~~ 528 (560)
+|+||++|++|+|.|||++|.++|.+ +++|+++++. .++.++++++++++...+. .++++.+...+.. ..
T Consensus 459 ~d~i~~~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~ 536 (578)
T PRK05850 459 KDLLIVDGRNHYPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGL 536 (578)
T ss_pred ccEEEECCeecCHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEeccccCcchhhhhhHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999985 5788888876 6788999998876543332 3455555554542 23
Q ss_pred CcceEEEec--CCCCCCCCcchHHHHHHHHhcc
Q 037622 529 KVRRVVFTK--SIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 529 ~p~~i~~~~--~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
.|..+++++ +||+|++||++|++|+++|.+.
T Consensus 537 ~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~ 569 (578)
T PRK05850 537 SVADLVLVAPGSIPITTSGKIRRAACVEQYRQD 569 (578)
T ss_pred CceEEEEeCCCCcCCCCCchHHHHHHHHHHHcC
Confidence 566666664 8999999999999999998754
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-61 Score=493.93 Aligned_cols=435 Identities=27% Similarity=0.408 Sum_probs=367.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEe
Q 037622 69 SYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFT 148 (560)
Q Consensus 69 Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~ 148 (560)
||+||.++++++|..|.+ .|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++..+++.+++ +.+++
T Consensus 1 Ty~~l~~~~~~~a~~l~~-~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~ 77 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKA-QGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDV--QLLLT 77 (436)
T ss_pred CHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCC--CEEEE
Confidence 899999999999999999 799999999999999999999999999999999999999999999999999999 88888
Q ss_pred eccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccC-CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHH
Q 037622 149 IYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKF-DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNF 227 (560)
Q Consensus 149 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~ 227 (560)
++...... +.. ..+..+..... ..........+++++++|||||||.||+|.++|.++
T Consensus 78 ~~~~~~~~--------~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~ 136 (436)
T TIGR01923 78 DSLLEEKD--------FQA-------------DSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNH 136 (436)
T ss_pred cCcccccc--------eee-------------cchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcEEEEehHHH
Confidence 76532110 000 00111111111 111122345688999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHH
Q 037622 228 IAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPIL 307 (560)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~ 307 (560)
...+..... ...+.++|+++...|++|.+++. .++.++..|+++++.+.+ ..+++.++++++|++.++|+++
T Consensus 137 ~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~~~--~~~~~~l~~~~~t~~~~~P~~l 208 (436)
T TIGR01923 137 YASAVGSKE-----NLGFTEDDNWLLSLPLYHISGLS-ILFRWLIEGATLRIVDKF--NQLLEMIANERVTHISLVPTQL 208 (436)
T ss_pred HHHHHHHHh-----hcCCCCCceEEEccCcHhHHHHH-HHHHHHhcCceEEecchH--HHHHHHHHHhCCeEEEeHHHHH
Confidence 888777665 46788999999999999999884 788999999999998765 4999999999999999999999
Q ss_pred HHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCe
Q 037622 308 MALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNI 387 (560)
Q Consensus 308 ~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~ 387 (560)
..+++.. . ..+++|.++++|+++++++.+.+.+. ++++++.||+||++..++.........+. ++|.|++++
T Consensus 209 ~~l~~~~-~----~~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~-~~G~~~~~~ 280 (436)
T TIGR01923 209 NRLLDEG-G----HNENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEMLHARP-DVGRPLAGR 280 (436)
T ss_pred HHHHhCc-C----CCCceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCcccccccc-CCCccCCCc
Confidence 9998752 1 12689999999999999999988764 89999999999998766544332222223 489999999
Q ss_pred EEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceec
Q 037622 388 QAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQI 467 (560)
Q Consensus 388 ~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v 467 (560)
++++.+.+. ++.|||+++++.++.||+++++.+...+ .++||+|||++++++||.+++.||.+|++|.+|.+|
T Consensus 281 ~~~i~~~~~------~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v 353 (436)
T TIGR01923 281 EIKIKVDNK------EGHGEIMVKGANLMKGYLYQGELTPAFE-QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENI 353 (436)
T ss_pred EEEEEeCCC------CCceEEEEECCccchhhCCChhhhhhhh-cCCCeeccceEEEcCCCCEEEeccccCeEEeCCEee
Confidence 999844222 2679999999999999999888776655 579999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcc
Q 037622 468 SPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKV 547 (560)
Q Consensus 468 ~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi 547 (560)
++.+||+++.++|.|.++++++.++...++.+++++++..+ .+.+++.+++++.|+++++|..++++++||+|++||+
T Consensus 354 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~~~~~l~~~l~~~l~~~~~p~~i~~~~~iP~t~~GK~ 431 (436)
T TIGR01923 354 YPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESD--ISQAKLIAYLTEKLAKYKVPIAFEKLDELPYNASGKI 431 (436)
T ss_pred CHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCC--CCHHHHHHHHHHhhhCCCCCeEEEEecCCCCCCCCce
Confidence 99999999999999999999999888778888888887653 6778999999999999999999999999999999999
Q ss_pred hHHHH
Q 037622 548 LRREL 552 (560)
Q Consensus 548 ~r~~L 552 (560)
+|++|
T Consensus 432 ~r~~L 436 (436)
T TIGR01923 432 LRNQL 436 (436)
T ss_pred ecccC
Confidence 99875
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=480.27 Aligned_cols=407 Identities=20% Similarity=0.251 Sum_probs=354.5
Q ss_pred EEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHh
Q 037622 59 LVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTL 138 (560)
Q Consensus 59 ~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~ 138 (560)
++.+ ++++||+||.++++++|..| . +|+++|++|+|+++|+++++++++|++++|++++|+++..+.+++..+++.
T Consensus 2 ~~~~--~~~~ty~el~~~~~~~a~~l-~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~ 77 (414)
T PRK08308 2 LIVN--DEEYSKSDFDLRLQRYEEME-Q-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKR 77 (414)
T ss_pred eEec--CceecHHHHHHHHHHHHHHH-H-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHh
Confidence 5565 78999999999999999998 4 589999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCch
Q 037622 139 CKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASK 218 (560)
Q Consensus 139 ~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK 218 (560)
+++ +.+++++.... .. ......++++++++|||||||.||
T Consensus 78 ~~~--~~~i~~~~~~~------------~~--------------------------~~~~~~~~~~~~i~~TSGtTG~PK 117 (414)
T PRK08308 78 AGC--HGLLYGESDFT------------KL--------------------------EAVNYLAEEPSLLQYSSGTTGEPK 117 (414)
T ss_pred CCC--CEEEecCcccc------------cc--------------------------cCCCCCCCCceEEEECCCCCCCCc
Confidence 999 77777542100 00 001234678999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcc
Q 037622 219 GAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVT 298 (560)
Q Consensus 219 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t 298 (560)
+|+++|+++..++..+.. ......+++.+..+|++|.+|+...++.++..|+++++.+.+++..+++.++++++|
T Consensus 118 gv~~s~~~l~~~~~~~~~-----~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t 192 (414)
T PRK08308 118 LIRRSWTEIDREIEAYNE-----ALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQH 192 (414)
T ss_pred EEEEehHhHHHHHHHHHH-----hhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCe
Confidence 999999999988877665 355678899999999999999877889999999999999989999999999999999
Q ss_pred eeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCccc
Q 037622 299 HFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYF 378 (560)
Q Consensus 299 ~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~ 378 (560)
.++++|+++..+.+... ...+++.++++|+++++++.+++++. ..++++.||+||++.+.... .....+
T Consensus 193 ~~~~~P~~~~~l~~~~~-----~~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~----~~~~~~ 261 (414)
T PRK08308 193 ILYAVPLMLHILGRLLP-----GTFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSICP----DMKSHL 261 (414)
T ss_pred EEEcCHHHHHHHHhcCC-----ccccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeeecC----CCCCCC
Confidence 99999999999986521 11368889999999999999999987 57899999999998654322 123457
Q ss_pred ccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccc
Q 037622 379 SVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKE 458 (560)
Q Consensus 379 ~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d 458 (560)
++|+|+|++++++.+. .++.||+++++ .++||+|||+|++++||.++++||.||
T Consensus 262 ~~G~p~~~~~~~~~~~-------~~~~gel~v~~-------------------~~~~~~TGDl~~~~~dg~l~~~GR~~~ 315 (414)
T PRK08308 262 DLGNPLPHVSVSAGSD-------ENAPEEIVVKM-------------------GDKEIFTKDLGYKSERGTLHFMGRMDD 315 (414)
T ss_pred ccCccCCCeEEEEecC-------CCCCceEEEEc-------------------CCceEECCceEEECCCccEEEecccCC
Confidence 8999999999998752 35679999974 267999999999999999999999999
Q ss_pred eeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecC
Q 037622 459 VIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKS 538 (560)
Q Consensus 459 ~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~ 538 (560)
+||++|++|+|.+||+++.++|+|.+++|++.+++..++.++++++... ..+.++++++++++|+.+++|..++++++
T Consensus 316 ~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~v~~ 393 (414)
T PRK08308 316 VINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--EIDPVQLREWCIQHLAPYQVPHEIESVTE 393 (414)
T ss_pred eEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--CCCHHHHHHHHHHhCccccCCcEEEEecc
Confidence 9999999999999999999999999999999999988888888888654 46788999999999999999999999999
Q ss_pred CCCCCCCcchHHHHH
Q 037622 539 IPKSAAGKVLRRELR 553 (560)
Q Consensus 539 lP~t~~GKi~r~~L~ 553 (560)
||+|++||++|+.|+
T Consensus 394 iP~t~~GKi~r~~~~ 408 (414)
T PRK08308 394 IPKNANGKVSRKLLE 408 (414)
T ss_pred CCCCCCcCeehhhhh
Confidence 999999999999543
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-59 Score=496.53 Aligned_cols=489 Identities=22% Similarity=0.289 Sum_probs=375.7
Q ss_pred CHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeE
Q 037622 43 DVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIV 120 (560)
Q Consensus 43 ~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 120 (560)
++.+.+.+.++ ++.+++.+...++.+||.||+++++++|.+|.+ .|+++||+|+|+++|+++++++++||+++|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~-~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~ 81 (545)
T PRK07768 3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAA-AGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASL 81 (545)
T ss_pred hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCchHHHHHHHHHHHcCccc
Confidence 45665665444 447788776667899999999999999999999 799999999999999999999999999999999
Q ss_pred eccCCCCCHHHH-------HHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCC
Q 037622 121 IPMNPLLSVSEI-------KKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDL 193 (560)
Q Consensus 121 v~l~~~~~~~~l-------~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (560)
+++++..+.+++ ..+++.+++ +.+++++.............+ ....++++......
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~- 144 (545)
T PRK07768 82 TMLHQPTPRTDLAVWAEDTLRVIGMIGA--KAVVVGEPFLAAAPVLEEKGI--------------RVLTVADLLAADPI- 144 (545)
T ss_pred cccCCCCCcchhHHHHHHHHHHHHhCCC--CEEEecchhhhhhhhhcccCC--------------ceeehhhhcccCCC-
Confidence 999988776544 446677888 888887654333222111000 11122222221111
Q ss_pred CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCC-cEEEEecChhhHHhHHHHHHHHhh
Q 037622 194 VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSE-AVFLAVLPMFHIYGLSLFALGLLS 272 (560)
Q Consensus 194 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~g~~~~~~~~l~ 272 (560)
......++++++++|||||||.||+|+++|.++...+..... ..++..+ |++++.+|++|..++...+..++.
T Consensus 145 -~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 218 (545)
T PRK07768 145 -DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFV-----AAEFDVETDVMVSWLPLFHDMGMVGFLTVPMY 218 (545)
T ss_pred -CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHH-----hcCCCCCCceeEEeCCCccchHHHHHHHHHHH
Confidence 223446789999999999999999999999999887776654 3455655 899999999999999767778899
Q ss_pred CCCEEEEeCC----cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhh---ccCCCCCCccceeecccCCCCHHHHHHHHH
Q 037622 273 LGPSVVVMRR----FEASEMLKVIDKYGVTHFPVVPPILMALTKAAK---GLCGNSLKSLKQVSSGAAPANSKIIEDFVG 345 (560)
Q Consensus 273 ~G~~~v~~~~----~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~---~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~ 345 (560)
.|+++++.++ .++..+++.+++++++++...|..+..+.+... .....+++++|.++++|+++++++.+.+.+
T Consensus 219 ~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~ 298 (545)
T PRK07768 219 FGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLD 298 (545)
T ss_pred CCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHH
Confidence 9999988764 267888999999999998877777766654311 112356789999999999999999999887
Q ss_pred h---C--CCCeeecccchhhcccccccCCCCC------------------------CCCcccccccccCCeEEEEEeCCC
Q 037622 346 A---F--PHVDFIQGYGMTESTAVGTRGFNTK------------------------KFSKYFSVGLLAPNIQAKVVDWVN 396 (560)
Q Consensus 346 ~---~--~~~~i~~~YG~tE~~~~~~~~~~~~------------------------~~~~~~~~G~~~p~~~~~v~d~~~ 396 (560)
. + +...+++.||+||++..++...... ....++++|+|+|+++++++| ++
T Consensus 299 ~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~ 377 (545)
T PRK07768 299 AGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-ED 377 (545)
T ss_pred HHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CC
Confidence 4 4 2235999999999987654322110 012356899999999999999 67
Q ss_pred CccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHH
Q 037622 397 GCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVL 476 (560)
Q Consensus 397 ~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l 476 (560)
+++++.|+.|||+++|+.++.||++++... ...+.++||+|||+++++++|.++++||.+|+|+++|.+|++.+||+.+
T Consensus 378 ~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~-~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l 456 (545)
T PRK07768 378 GQVLPPRGVGVIELRGESVTPGYLTMDGFI-PAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAA 456 (545)
T ss_pred CCCCCCCCEEEEEEccCcccccccCCCCCc-ccccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHH
Confidence 899999999999999999999999865443 3344678999999999999999999999999999999999999999999
Q ss_pred hcCCCcccEEEEccc--CCCCCceEEEEEEecCCC-CCCHHHHHHHHHhccCCC--CCcceEEEec--CCCCCCCCcchH
Q 037622 477 ICHPEILDVAVTGAM--DKVLGEIPVAFVVRRDGS-TLTEAAVIDYLAQRVAPY--KKVRRVVFTK--SIPKSAAGKVLR 549 (560)
Q Consensus 477 ~~~~~v~~~~v~~~~--~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~~~l~~~--~~p~~i~~~~--~lP~t~~GKi~r 549 (560)
.++|+|.+++|++.. +...++..++++...... .....++.+++++.+... ..|..+.+++ +||+|++||++|
T Consensus 457 ~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r 536 (545)
T PRK07768 457 ARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRR 536 (545)
T ss_pred HhCcccccceEEEEEecCCCCceEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCCccEEEEeCCCcCCCCCchhHHH
Confidence 999999998777654 333344444444433221 122245677777776544 5788888886 899999999999
Q ss_pred HHHHHHHh
Q 037622 550 RELRKFLT 557 (560)
Q Consensus 550 ~~L~~~~~ 557 (560)
+.|+++|.
T Consensus 537 ~~l~~~~~ 544 (545)
T PRK07768 537 ANAAELVT 544 (545)
T ss_pred HHHHHhcC
Confidence 99999885
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-58 Score=442.97 Aligned_cols=494 Identities=22% Similarity=0.270 Sum_probs=406.9
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|++++|.++++ ++++|+++..+.+++||+|++++++++|+.|.. .|++.||.|+++|+|.++++.+||+++++|++
T Consensus 77 ~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~-~~l~~GD~VAL~men~pefv~lWlGLaKlGv~ 155 (649)
T KOG1179|consen 77 RTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHA-EGLKAGDVVALLMENRPEFVALWLGLAKLGVI 155 (649)
T ss_pred CcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHH-hhcccCCEEEEecCCChhHHHHHHhHHhhCce
Confidence 799999999886 559999988667899999999999999999999 69999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC------CCEEEecCCCcccccCCCcccHHHhhcccCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT------TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDL 193 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (560)
...+|++...+.|.|.+..+++ +.++++.+..+.+.+..+ ..++..+... ..++..++...++.....
T Consensus 156 tA~iNtNlR~~~LlHsi~~s~a--ralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~----~~~g~~~L~~~l~~~~~~ 229 (649)
T KOG1179|consen 156 TAFINTNLRGEPLLHSITVSGA--RALVVGPELLNALEEILPLLIKNGIHVFSLGPTS----VPDGIESLLAKLSAAPKH 229 (649)
T ss_pred eeeeccccccchhhhhhhhcCc--eEEEECHHHHHHHHhcchhhhhccceEEecCCCC----CCchHHHHHHhhcccccC
Confidence 9999999999999999999999 999999998877666532 2233332211 122333343333333222
Q ss_pred ----CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHH
Q 037622 194 ----VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALG 269 (560)
Q Consensus 194 ----~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~ 269 (560)
......+-.++++++|||||||.||+.+++|.-+......+.. .++++.+|+++..+|++|+++...++..
T Consensus 230 ~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~-----~~g~~~~DvvY~~lPLYHsaa~ilGi~~ 304 (649)
T KOG1179|consen 230 PVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYY-----VFGMTADDVVYTTLPLYHSAAGILGIGG 304 (649)
T ss_pred CCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHH-----HhCCCccceEEEcchhHHHHHHHHHHHH
Confidence 2233445679999999999999999999999998887775554 5889999999999999999999999999
Q ss_pred HhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCC
Q 037622 270 LLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPH 349 (560)
Q Consensus 270 ~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~ 349 (560)
++..|+|+++-.+|+..++|+...+|++|++...--+++-|++. +..+.+.-.++|..+-- .+-+++|+.|.++|..
T Consensus 305 ~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~-p~~~~er~HkVRla~GN--GLR~diW~~Fv~RFg~ 381 (649)
T KOG1179|consen 305 CLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQ-PPSPEERQHKVRLAYGN--GLRPDIWQQFVKRFGI 381 (649)
T ss_pred HHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcC-CCChhhcCceEEEEecC--CCCchHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999987 44444455677766544 4899999999999966
Q ss_pred CeeecccchhhcccccccCCCCCCCCccccccc------ccCCeEEEEEeCCCCc----------cCCCCCcceEEEe--
Q 037622 350 VDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGL------LAPNIQAKVVDWVNGC----------FLPPGSTGELWLR-- 411 (560)
Q Consensus 350 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~------~~p~~~~~v~d~~~~~----------~~~~g~~Gel~v~-- 411 (560)
.+|.+.||+||...- +.+.. .+.|.+|+ -+--+++.-+|+++++ +|++||.|.|+-+
T Consensus 382 ~~IgE~YgaTEgn~~-~~N~d----~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~ 456 (649)
T KOG1179|consen 382 IKIGEFYGATEGNSN-LVNYD----GRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIV 456 (649)
T ss_pred CeEEEEeccccCcce-eeeec----CccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEec
Confidence 779999999996543 22221 12233322 2223455555666664 4678999977643
Q ss_pred cccc---hhhhcCCchhhhhcc------CCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCc
Q 037622 412 GPGT---MKEYINNADATMSTI------DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEI 482 (560)
Q Consensus 412 ~~~~---~~gy~~~~~~~~~~~------~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v 482 (560)
.... |.||.+.++.|.+.. .+|-||+|||+-.+|+.|++||.+|..|.+...|++|+..|||++|....++
T Consensus 457 ~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~ 536 (649)
T KOG1179|consen 457 QKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFL 536 (649)
T ss_pred cCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccc
Confidence 2233 899999888776553 4566999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcccCCCC-CceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 483 LDVAVTGAMDKVL-GEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 483 ~~~~v~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
.|+.|+|+.-+.. |..-.|.|+..+..+.+.+.+-+++++.||+|.+|..+.+.+++++|.+-|..|..|.++
T Consensus 537 ~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~e 610 (649)
T KOG1179|consen 537 QDVNVYGVTVPGYEGRAGMAAIVLDPTTEKDLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQKE 610 (649)
T ss_pred cceeEEEEecCCccCccceEEEEecCcccchHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHHHc
Confidence 9999999876554 566678888888889999999999999999999999999999999999999999999876
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-58 Score=440.20 Aligned_cols=481 Identities=23% Similarity=0.334 Sum_probs=384.7
Q ss_pred ceecHHHHHHHHHHHHHHHHHhhCCCCCCE-EEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceE
Q 037622 66 YSISYPQLFPLVQSVASGLRHHFGISQGDA-VLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKIS 144 (560)
Q Consensus 66 ~~~Ty~el~~~v~~la~~L~~~~g~~~gd~-V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~ 144 (560)
..+||.|+++++..+|++|.+ +|++++++ |+|+++.+.+|+++++||++.+..+|.+..++..+.+.|-|++++. +
T Consensus 88 ~w~sy~ev~~~~~~~gsGL~~-lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~--~ 164 (678)
T KOG1180|consen 88 KWMSYNEVYERVHNFGSGLVK-LGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETES--T 164 (678)
T ss_pred eeecHHHHHHHHHHHHHHHHH-hCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccc--e
Confidence 468999999999999999999 89998877 9999999999999999999999999999999999999999999999 9
Q ss_pred EEEeeccchHHhhhcCC-----CCEEEecCC----Cccccc-----CCCcccHHHhhcccCCC-CCCCCCCCCCEEEEEc
Q 037622 145 LAFTIYENVDKLRSWGT-----TPVVAVPEN----LVNDFK-----EGRFSDFHKLIAGKFDL-VERPVIRQQDTAAILY 209 (560)
Q Consensus 145 ~v~~~~~~~~~~~~~~~-----~~vi~~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~ 209 (560)
.++++.+..+.+..... ..+|.++.. ..+.+. .-...+++++..-+... ..+.+..|+|+|+|+|
T Consensus 165 ~i~T~~~LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMY 244 (678)
T KOG1180|consen 165 AIFTDSELLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMY 244 (678)
T ss_pred EEEeCHHHHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEE
Confidence 99999998887654422 345555521 111111 11245666666544333 2222337899999999
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHH--
Q 037622 210 SSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASE-- 287 (560)
Q Consensus 210 TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~-- 287 (560)
||||||.||||+++|+|+++.+...... ...+++.|+++.++|+.|++.+. .-+.++..|+.+=+.++.+..+
T Consensus 245 TSGSTG~PKGVml~H~NiVA~~~G~~~~----v~~lg~~D~yi~yLPLAHIlEl~-aE~~~ft~G~~iGY~S~~TLtdts 319 (678)
T KOG1180|consen 245 TSGSTGLPKGVMLTHSNIVAGVTGVGEN----VPELGPKDRYIAYLPLAHILELT-AELVCFTWGGRIGYSSPLTLTDTS 319 (678)
T ss_pred cCCCCCCCceEEEecccHHhhhhhhccc----CcccCCCceEEEechHHHHHHHH-HHHHHHhhCCEeecCCcceecccc
Confidence 9999999999999999999988877653 34789999999999999999996 6667889999888766422111
Q ss_pred ------HHHHHHHhCcceeccCcHHHHHHHHhhh-------------------------ccCC----------------C
Q 037622 288 ------MLKVIDKYGVTHFPVVPPILMALTKAAK-------------------------GLCG----------------N 320 (560)
Q Consensus 288 ------~~~~l~~~~~t~l~~~P~~~~~l~~~~~-------------------------~~~~----------------~ 320 (560)
---.+..+|||.+.++|..|.++-+... +... .
T Consensus 320 ~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~ 399 (678)
T KOG1180|consen 320 SKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRAL 399 (678)
T ss_pred hhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHH
Confidence 1224567899999999999988654300 0000 0
Q ss_pred CCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccC
Q 037622 321 SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFL 400 (560)
Q Consensus 321 ~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~ 400 (560)
.-.+||.+++||++++++..+.+.-.+ .+++.++||.||+++.++.... .+...+.+|.|+|.++++++|.+++.-.
T Consensus 400 lGG~lR~~LsGGapLS~dtQrF~nic~-C~Pv~qGYGLTEtca~~tv~e~--~d~~~g~vG~pl~c~eiKLvdw~EgGY~ 476 (678)
T KOG1180|consen 400 LGGNLRYILSGGAPLSPDTQRFMNICF-CCPVLQGYGLTETCAAATVLEP--EDFSTGRVGAPLPCCEIKLVDWEEGGYF 476 (678)
T ss_pred hCCceEEEEeCCCCCCHHHHHHHHHhc-cccccccccccchhcccEecCh--hhcccccccCCccceEEEEEEhhhcCcc
Confidence 125799999999999999999999888 8899999999999988776543 3456789999999999999998776544
Q ss_pred CCCC--cceEEEecccchhhhcCCchhhhhccCC-CC--ceecCceEEEccCCcEEEEccccceeee-cceecChHHHHH
Q 037622 401 PPGS--TGELWLRGPGTMKEYINNADATMSTIDK-EG--WLHTGDIAYFDEDGYLYIVDRLKEVIKY-NGYQISPADLET 474 (560)
Q Consensus 401 ~~g~--~Gel~v~~~~~~~gy~~~~~~~~~~~~~-~~--~~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~~IE~ 474 (560)
+.+. .|||+++|++++.||+++|+.|++.|.. +| ||+|||+|++++||.|.+.+|++|.+|+ +|+.|++..||.
T Consensus 477 ~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa 556 (678)
T KOG1180|consen 477 AKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEA 556 (678)
T ss_pred CCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHH
Confidence 4444 7999999999999999999999999976 78 9999999999999999999999999999 999999999999
Q ss_pred HHhcCCCcccEEEEcccCCCCCceEEEEEEecCCC--------CCCH-----------------HHHHHHH-HhccCCCC
Q 037622 475 VLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS--------TLTE-----------------AAVIDYL-AQRVAPYK 528 (560)
Q Consensus 475 ~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~~~-----------------~~l~~~~-~~~l~~~~ 528 (560)
+++..|.|...+|++..... .++++||+.++. .... +++.+.- .++|..+.
T Consensus 557 ~l~s~p~V~NICvyAd~~~s---~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iE 633 (678)
T KOG1180|consen 557 ALRSSPYVDNICVYADSNKS---KPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIE 633 (678)
T ss_pred HHhcCcchhheEEecccccc---eeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999877665 589999985431 0110 1222222 44588888
Q ss_pred CcceEEEecCC--C----CCCCCcchHHHHHHHHhccC
Q 037622 529 KVRRVVFTKSI--P----KSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 529 ~p~~i~~~~~l--P----~t~~GKi~r~~L~~~~~~~~ 560 (560)
+|..|++.++- | .|..-|+.|+.++..|.++|
T Consensus 634 ip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~ei 671 (678)
T KOG1180|consen 634 IPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKKEI 671 (678)
T ss_pred ccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHHHH
Confidence 99998887653 3 44566999999999988764
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-57 Score=461.40 Aligned_cols=393 Identities=34% Similarity=0.528 Sum_probs=316.9
Q ss_pred CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHH
Q 037622 53 HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEI 132 (560)
Q Consensus 53 ~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l 132 (560)
+++++|+++ ..++++||+||+++++++|..|.+ +|+++|++|+|+++|+++++++++||+++|++++|++|.++.+++
T Consensus 8 ~pd~~a~~~-~~~~~~Ty~~l~~~v~~la~~L~~-~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~~ 85 (417)
T PF00501_consen 8 YPDRIALID-DEGRSLTYKQLYERVRKLAAALRK-LGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSLSEDEL 85 (417)
T ss_dssp STTSEEEEE-TTTEEEEHHHHHHHHHHHHHHHHH-TTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTSSHHHH
T ss_pred CCCceEEEE-CCCEEEEHHHHHHHHHHHhhHHHH-hCCCccccccccCCccceeeeeecccccccccccccccccccccc
Confidence 577999999 348999999999999999999997 899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEEe----eccchHHhhhcCC-----CCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCC-CCCC
Q 037622 133 KKQVTLCKTKISLAFT----IYENVDKLRSWGT-----TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPV-IRQQ 202 (560)
Q Consensus 133 ~~~l~~~~~~~~~v~~----~~~~~~~~~~~~~-----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 202 (560)
.++++.+++ +++++ +......+..... ..++.++... ......+............ ..++
T Consensus 86 ~~~l~~~~~--~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 155 (417)
T PF00501_consen 86 RHILRQSGP--KVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDD--------LPKKEALKSASLSDEPQSPEDSPD 155 (417)
T ss_dssp HHHHHHHTE--SEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSS--------CTTCHHHHHHHHCHCSHSTTHTTT
T ss_pred cccccccce--eEEEEeccccccccccchhhhcccccccccccccccc--------ccccccccccccccccccCCCCcc
Confidence 999999999 88886 2222222222211 2233333221 0000001000000000000 0568
Q ss_pred CEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC
Q 037622 203 DTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR 282 (560)
Q Consensus 203 ~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 282 (560)
++++++|||||||.||+|.++|+++.+.+..+.. .. ...++ |++++.+|++|.+|+...++.++..|+++++.+.
T Consensus 156 ~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~-~~--~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~ 230 (417)
T PF00501_consen 156 DPAFILFTSGTTGKPKGVVLTHRNLLAQARALAL-PE--YFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSP 230 (417)
T ss_dssp SEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHH-HH--TTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESS
T ss_pred ceeEeecccccccccccccccccccccccccccc-cc--ccccC--ceEEeecccccccccccccccccccccccccccc
Confidence 9999999999999999999999999998877641 00 12222 6999999999999997799999999999999997
Q ss_pred cC---HHHHHHHHHHhCcceeccCcHHHHHHHHhhhcc----CCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecc
Q 037622 283 FE---ASEMLKVIDKYGVTHFPVVPPILMALTKAAKGL----CGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQG 355 (560)
Q Consensus 283 ~~---~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~----~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 355 (560)
.. ++.+++.++++++|++.++|+++..+++. ... ...+++++|.++++|+++++++.+++++.++..++++.
T Consensus 231 ~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~-~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~ 309 (417)
T PF00501_consen 231 FDLFDPESLLELISRYKPTILFAVPSMLEALLQS-PEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINL 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHH-HHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEE
T ss_pred ccccccccchhccccccccccccccccccccccc-ccccccccccccccccccccccccCChhhccccccccccccceec
Confidence 54 47789999999999999999999999874 322 24578889999999999999999999999955699999
Q ss_pred cchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCc
Q 037622 356 YGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGW 435 (560)
Q Consensus 356 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 435 (560)
||+||++.+++.........+.+++|.|+|+++++|+|++++++++.|+.|||+++||.++.||+++|+.+.+.|+++||
T Consensus 310 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~ 389 (417)
T PF00501_consen 310 YGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGW 389 (417)
T ss_dssp EEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSE
T ss_pred ccccccceeeecccccccccccccccccccccccccccccccccccccccccccccCCccceeeeccccccccccccccc
Confidence 99999999987543222234677899999999999999877999999999999999999999999999999999976689
Q ss_pred eecCceEEEccCCcEEEEccccceeeec
Q 037622 436 LHTGDIAYFDEDGYLYIVDRLKEVIKYN 463 (560)
Q Consensus 436 ~~TGD~~~~~~~g~l~~~GR~~d~i~~~ 463 (560)
|+|||+|++|+||.++++||.||+||++
T Consensus 390 ~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 390 YRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp EEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred eecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 9999999999999999999999999974
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=434.60 Aligned_cols=393 Identities=25% Similarity=0.349 Sum_probs=330.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEe
Q 037622 69 SYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFT 148 (560)
Q Consensus 69 Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~ 148 (560)
||.||.+.++++|++|.+..|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.+++ +.+++
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~--~~ii~ 78 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGA--RLLLT 78 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCC--CEEEE
Confidence 8999999999999999875699999999999999999999999999999999999999999999999999999 99999
Q ss_pred eccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhccc-CCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHH
Q 037622 149 IYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGK-FDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNF 227 (560)
Q Consensus 149 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~ 227 (560)
+......+.... ..++...... ....... ...........+++++++|||||||.||+|.++|.++
T Consensus 79 ~~~~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~~~~ 145 (408)
T TIGR01733 79 DSALASRLAGLV-LPIILVDPLE------------LAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSL 145 (408)
T ss_pred cCchhhhccccC-CceEEechhh------------hhhcccccccccccCCCCCCCcEEEEEcCCCCCCCCEEEeccHHH
Confidence 887655554332 1222222110 0000000 0001111145789999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcC---HHHHHHHHHHhCcceeccCc
Q 037622 228 IAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFE---ASEMLKVIDKYGVTHFPVVP 304 (560)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~---~~~~~~~l~~~~~t~l~~~P 304 (560)
......... ...+.+++++++..|++|..++. .++.++..|+++++.+... +..+.+.++++++|.+.++|
T Consensus 146 ~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p 219 (408)
T TIGR01733 146 VNLLAWLAR-----RYGLDPDDRVLQFASLSFDASVE-EIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTP 219 (408)
T ss_pred HHHHHHHHH-----hcCCCCCceEEEecCCccchhHH-HHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCH
Confidence 988887766 46677899999999999999884 8899999999999988643 58899999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCC-CCCC--cccccc
Q 037622 305 PILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNT-KKFS--KYFSVG 381 (560)
Q Consensus 305 ~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~-~~~~--~~~~~G 381 (560)
.+++.+.+... ..++++|.+++||+++++++++.+.+.++++.+++.||+||++.+++..... .... ++.++|
T Consensus 220 ~~~~~l~~~~~----~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G 295 (408)
T TIGR01733 220 SLLALLAAALP----PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIG 295 (408)
T ss_pred HHHHHHHHhhh----hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccC
Confidence 99999987622 5678999999999999999999999999669999999999999877532211 1111 267899
Q ss_pred cccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCC------C--ceecCceEEEccCCcEEEE
Q 037622 382 LLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKE------G--WLHTGDIAYFDEDGYLYIV 453 (560)
Q Consensus 382 ~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~------~--~~~TGD~~~~~~~g~l~~~ 453 (560)
.|+|+++++|+|++ +++++.|+.|||++++++++.||+++++.+...|... + ||+|||++++|++|++++.
T Consensus 296 ~~~~~~~~~i~~~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~ 374 (408)
T TIGR01733 296 RPLANTRLYVLDDD-LRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFL 374 (408)
T ss_pred cccCCceEEEECCC-CCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEe
Confidence 99999999999965 8999999999999999999999999999988776332 2 9999999999999999999
Q ss_pred ccccceeeecceecChHHHHHHHhcCCCcccEEE
Q 037622 454 DRLKEVIKYNGYQISPADLETVLICHPEILDVAV 487 (560)
Q Consensus 454 GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v 487 (560)
||.+|+|+.+|++++|.+||+++.++|.|.+++|
T Consensus 375 gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 375 GRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred eccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence 9999999999999999999999999999998875
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=399.34 Aligned_cols=322 Identities=27% Similarity=0.421 Sum_probs=279.4
Q ss_pred CCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEE
Q 037622 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278 (560)
Q Consensus 199 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 278 (560)
..++++++++|||||||.||+|+++|.++......... .+...++++..+|++|..++. .++.++..|++++
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~-------~~~~~~~~~~~~p~~~~~g~~-~~~~~l~~g~~~v 103 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHD-------RLGGPGQWLLALPAHHIAGLQ-VLVRSVIAGSEPV 103 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHh-------ccCCCCeEEEECChHHHHHHH-HHHHHHHcCCeEE
Confidence 34689999999999999999999999999887766543 133567899999999999985 6778888899888
Q ss_pred E---eCCcCHHHHHHHHHHhC--cceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeee
Q 037622 279 V---MRRFEASEMLKVIDKYG--VTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFI 353 (560)
Q Consensus 279 ~---~~~~~~~~~~~~l~~~~--~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~ 353 (560)
+ ...+++..+++.+++++ .++...+|..+..++.. . .....++++|.+++||+++++++.+.+.+. +++++
T Consensus 104 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~-~-~~~~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~ 179 (358)
T PRK07824 104 ELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDD-P-AATAALAELDAVLVGGGPAPAPVLDAAAAA--GINVV 179 (358)
T ss_pred ecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhC-c-cccCCcccceEEEECCCCCCHHHHHHHHhc--CCcEE
Confidence 7 33578999999999998 45667788888776653 2 223457899999999999999999998864 89999
Q ss_pred cccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCC
Q 037622 354 QGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKE 433 (560)
Q Consensus 354 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 433 (560)
+.||+||++..+. ..|.|+|++++++.+ |||+++|+.++.||+++++.+ .+..+
T Consensus 180 ~~YG~TE~~~~~~------------~~G~~~~g~~v~i~~------------Gei~v~g~~~~~gY~~~~~~~--~~~~~ 233 (358)
T PRK07824 180 RTYGMSETSGGCV------------YDGVPLDGVRVRVED------------GRIALGGPTLAKGYRNPVDPD--PFAEP 233 (358)
T ss_pred ecccCCccCCCcC------------cCceeCCCCEEEecC------------CEEEEecCccccccCCCcccc--cccCC
Confidence 9999999875432 248899999999843 999999999999999988754 34467
Q ss_pred CceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCH
Q 037622 434 GWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTE 513 (560)
Q Consensus 434 ~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 513 (560)
|||+|||+|++ ++|.+++.||.||+||.+|++|+|.+||++|.++|+|.+++|++.+++..|+.++++++...+.....
T Consensus 234 g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~ 312 (358)
T PRK07824 234 GWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTL 312 (358)
T ss_pred CceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCH
Confidence 89999999999 89999999999999999999999999999999999999999999999988999999998877667788
Q ss_pred HHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 514 AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 514 ~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+++++++++.|+.+++|..|+++++||+|++||++|++|++++.++
T Consensus 313 ~~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 358 (358)
T PRK07824 313 EALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAGE 358 (358)
T ss_pred HHHHHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999998753
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-46 Score=412.71 Aligned_cols=471 Identities=13% Similarity=0.134 Sum_probs=345.8
Q ss_pred CCCCHHHHHhccCC--CCceEEEEC---CCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHH
Q 037622 40 SLLDVDSFIFSHKH--NGRTALVDS---LSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114 (560)
Q Consensus 40 ~~~~~~~~~~~~~~--~~~~a~~~~---~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~ 114 (560)
...|+.+++.+.++ ++++|+... .+.+.+||+|+.++++++|.+|.+ +|+++||+|+|+++|+++|+++.+||+
T Consensus 425 ~~~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~-lGV~~GDrVaIls~N~~Ewvia~lA~~ 503 (1452)
T PTZ00297 425 GVRSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLA-LGVRPGDVIGVDCEASRNIVILEVACA 503 (1452)
T ss_pred cCCCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 34689998887764 458888631 112689999999999999999999 899999999999999999999999999
Q ss_pred HhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC---CCEEEecCCCc-c--ccc---CCCcccHHH
Q 037622 115 YLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT---TPVVAVPENLV-N--DFK---EGRFSDFHK 185 (560)
Q Consensus 115 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~---~~vi~~~~~~~-~--~~~---~~~~~~~~~ 185 (560)
++|++++|+++ +..++.++++.+++ ++++++.+....+.+... ..++++++... . ... ......+++
T Consensus 504 ~~GaV~VPly~--t~~eL~yIL~~S~a--kvVfv~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ 579 (1452)
T PTZ00297 504 LYGFTTLPLVG--KGSTMRTLIDEHKI--KVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEF 579 (1452)
T ss_pred HcCCEEEeCCC--CHHHHHHHHHhcCC--cEEEEchhHHHHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHHH
Confidence 99999999975 46789999999999 999998887776655432 45666542110 0 000 012345777
Q ss_pred hhcccCC--CCCCCCCCCCCEEEEEc---CCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhH
Q 037622 186 LIAGKFD--LVERPVIRQQDTAAILY---SSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHI 260 (560)
Q Consensus 186 ~~~~~~~--~~~~~~~~~~~~a~i~~---TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 260 (560)
++..+.. ........++|++.|+| ||||||.||||++||+|++.++........ .....++|++++++|++|+
T Consensus 580 ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~--~~~~~~~D~~Ls~LPLaHI 657 (1452)
T PTZ00297 580 VEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGV--LPSSFKKHLMVHFTPFAML 657 (1452)
T ss_pred HHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhcc--ccCCCCCCEEEEechHHHH
Confidence 7665421 11123346789999985 999999999999999999998887654110 1234678999999999999
Q ss_pred HhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhcc-----------------------
Q 037622 261 YGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGL----------------------- 317 (560)
Q Consensus 261 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~----------------------- 317 (560)
++.. ..+.++..|+++.+ +++..+++.+++++||+++++|.+++.+.......
T Consensus 658 ~er~-~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~ 733 (1452)
T PTZ00297 658 FNRV-FVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLI 733 (1452)
T ss_pred HHHH-HHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9974 66778999999874 46899999999999999999999999875431000
Q ss_pred --CCCC----------------CCccceeecccC--CCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcc
Q 037622 318 --CGNS----------------LKSLKQVSSGAA--PANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKY 377 (560)
Q Consensus 318 --~~~~----------------l~~lr~~~~~g~--~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~ 377 (560)
.... -.++|.+++||. +++..+ .. ++++...||+||+. +..... ...
T Consensus 734 ~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l-----~~--~i~i~~g~glTE~~---~~~~~~--~~~- 800 (1452)
T PTZ00297 734 NIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSL-----LE--HISVCYVPCLREVF---FLPSEG--VFC- 800 (1452)
T ss_pred hcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHH-----hC--CceEEEecceEEee---eecCCC--Ccc-
Confidence 0000 046788888763 444322 22 57788899999953 222221 122
Q ss_pred cccccccCCeEEEEEeCCC-CccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccc
Q 037622 378 FSVGLLAPNIQAKVVDWVN-GCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRL 456 (560)
Q Consensus 378 ~~~G~~~p~~~~~v~d~~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~ 456 (560)
..|.|+|++++++.+.++ +. .+..|||+++ |.++|+.|.+.+ +||+ +||.|+++||+
T Consensus 801 -~~G~PlpgvEvKI~~~~E~~~---~~~~GEIlvr-------~~kdpe~T~e~~--~gW~---------~dG~L~IidRk 858 (1452)
T PTZ00297 801 -VDGTPAPSLQVDLEPFDEPSD---GAGIGQLVLA-------KKGEPRRTLPIA--AQWK---------RDRTLRLLGPP 858 (1452)
T ss_pred -cCCeecCceEEEEcccccccC---CCCCCeEEEE-------ECCChHHHHHhh--CcCc---------cCCeEEEEecc
Confidence 239999999999987322 22 1235999995 458999998743 4664 68999999999
Q ss_pred cceeee-cceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCC-------------------CCHHH-
Q 037622 457 KEVIKY-NGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGST-------------------LTEAA- 515 (560)
Q Consensus 457 ~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-------------------~~~~~- 515 (560)
+|+||+ +|++|+|+.||+++.++|.|.+++|+|...+. ++|+|++..... .+.++
T Consensus 859 Kdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~----lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el 934 (1452)
T PTZ00297 859 LGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP----IIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTEL 934 (1452)
T ss_pred ccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCc----eEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHH
Confidence 999999 89999999999999999999999999987664 788887642110 12222
Q ss_pred -------HHHHH---H--hccCCCCCcceEEEe-cCC-----CCCCCCcchHHHHHHHHhccC
Q 037622 516 -------VIDYL---A--QRVAPYKKVRRVVFT-KSI-----PKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 516 -------l~~~~---~--~~l~~~~~p~~i~~~-~~l-----P~t~~GKi~r~~L~~~~~~~~ 560 (560)
+.+.+ . +.+..+.+++.++++ ++| -+||+.|+.|+.+.++|+++|
T Consensus 935 ~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~I 997 (1452)
T PTZ00297 935 VAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVI 997 (1452)
T ss_pred HHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHH
Confidence 22222 1 125567788877775 466 389999999999999998764
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=358.24 Aligned_cols=408 Identities=22% Similarity=0.277 Sum_probs=333.8
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.++++.|.+++. +++.|++.+ +.++||+|+.++++++|+.|.+ .|++++++|+++++++.+++++++|++++|+.
T Consensus 227 ~~i~~~f~~~a~~~p~~~a~~~~--~~~lty~el~~~a~~la~~l~~-~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~ 303 (642)
T COG1020 227 LTIHLLFEEQAATTPDAVALVRG--GQQLTYAELDARANRLARLLIS-LGVGPGETVAILADRSLELVVALLAVLKAGAA 303 (642)
T ss_pred chHHHHHHHHHHhCCCceeEecC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCe
Confidence 678888888875 558888887 7999999999999999999999 79999999999998899999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVI 199 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (560)
++|++|.++.+++..+++.+++ +.+++............ .+..+... .............
T Consensus 304 yvP~d~~~P~~r~~~~l~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~---------------~~~~~~~~~~~~~ 363 (642)
T COG1020 304 YVPLDPLYPAERLAYILEDSRP--TLLLTQAHLRVDDVGLP---GLALDDAL---------------SEIPDTDPIPQAL 363 (642)
T ss_pred EecCCCCChHHHHHHHHhhcCc--cEEEeccccccccccCC---cccccccc---------------ccCCccCcccccC
Confidence 9999999999999999999999 88887633211111100 01111100 0000000001233
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.+++.+|++|||||||.||||..+|+++.+......+ .+..+..|+++...++.+..+. ..++.++..|+++++
T Consensus 364 ~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~-----~~~~~~~d~~l~~~s~~fD~~~-~~~f~~l~~G~~l~~ 437 (642)
T COG1020 364 LGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGA-----RFGLDADDRVLALASLSFDASV-FEIFGALLEGARLVL 437 (642)
T ss_pred CCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHH-----hcCCCcccEEeecCCcccchhH-HHHHHHHhCCCEEEe
Confidence 5589999999999999999999999999986666655 4678888999999998776666 489999999999999
Q ss_pred eCC---cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCC--CCCCccceeecccCCCCHHHHHHHHHhCC-CCeee
Q 037622 280 MRR---FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCG--NSLKSLKQVSSGAAPANSKIIEDFVGAFP-HVDFI 353 (560)
Q Consensus 280 ~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~--~~l~~lr~~~~~g~~~~~~~~~~~~~~~~-~~~i~ 353 (560)
.+. .++..+.+.+.++++|.+..+|.++..++.. ..... .....+|.+++||+.++.++...+....+ ...+.
T Consensus 438 ~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~-~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~ 516 (642)
T COG1020 438 APALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLA-ALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLL 516 (642)
T ss_pred cCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhc-hhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEe
Confidence 874 6789999999999999999999999998865 11111 22235999999999999999999988764 57899
Q ss_pred cccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCC
Q 037622 354 QGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKE 433 (560)
Q Consensus 354 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 433 (560)
+.||+||+...+.............++|.|+++..+.++| +.+++++.|..||+++.|.++..||+++|+.|...|..+
T Consensus 517 ~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~ 595 (642)
T COG1020 517 NLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIAL 595 (642)
T ss_pred eccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC-CCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhc
Confidence 9999999766555433222221246899999999999999 789999999999999999999999999999999998544
Q ss_pred CceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCC
Q 037622 434 GWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHP 480 (560)
Q Consensus 434 ~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~ 480 (560)
.+|+|||++++..||.+.++||.|+++|++|++|.+.|||..+.++|
T Consensus 596 ~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 596 RLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642 (642)
T ss_pred cCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence 58999999999999999999999999999999999999999998775
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=334.76 Aligned_cols=288 Identities=20% Similarity=0.257 Sum_probs=233.2
Q ss_pred CCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccC--CCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 202 QDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYL--SSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 202 ~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
+..++++|||||||.||+|+++|+++...+..... ..++ ...+++++++|++|++|+.+.++.++..|+++++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~ 169 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAK-----ILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ 169 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHH-----HhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence 45788999999999999999999999988776655 2333 3346899999999999987788889999999999
Q ss_pred eCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchh
Q 037622 280 MRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMT 359 (560)
Q Consensus 280 ~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~t 359 (560)
.+.+++..+++.++.+ |++.++|++++.+.+. ...+++++. ++||+++++++++.+.+. +..++++.||+|
T Consensus 170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~-----~~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~T 240 (386)
T TIGR02372 170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADL-----DYRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGAT 240 (386)
T ss_pred cCCCChHHHHHhhccC--CEEEECcHHHHHHHhh-----CcCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccc
Confidence 8888888888877643 8999999999999764 134567775 678999999999999885 235799999999
Q ss_pred hcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecC
Q 037622 360 ESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTG 439 (560)
Q Consensus 360 E~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TG 439 (560)
|++++++... +...|.++|++++.+ + ++. + .|+ ..|++||
T Consensus 241 Et~~i~~~~~-------~~~~~~~~p~~~~~~-~--~~~--------~---~g~-------------------~~~~~tg 280 (386)
T TIGR02372 241 ETGGIGLREA-------PDDPFRLLPDLACFA-D--TLS--------S---AGL-------------------ARRLDLQ 280 (386)
T ss_pred cccccccccC-------CCCCcccCCCccccC-C--Ccc--------C---CCc-------------------cceeecC
Confidence 9987654321 223567788776543 1 111 0 011 2368999
Q ss_pred ceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCC--HHHHH
Q 037622 440 DIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLT--EAAVI 517 (560)
Q Consensus 440 D~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~ 517 (560)
|+++++++|++++.||+||+||++|++|+|.+||+++.++|+|.+++|.. .++.+.++|++.++.... .++++
T Consensus 281 D~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~~~~~~~l~ 355 (386)
T TIGR02372 281 DRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADEAELEIELR 355 (386)
T ss_pred ceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998863 346788898887653332 46899
Q ss_pred HHHHhccCCCCCcceEEEecCCCCCCCCcch
Q 037622 518 DYLAQRVAPYKKVRRVVFTKSIPKSAAGKVL 548 (560)
Q Consensus 518 ~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~ 548 (560)
++++++|++|+.|..++++++||+|++||++
T Consensus 356 ~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 356 ATAARHLPAPARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred HHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence 9999999999999999999999999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=325.84 Aligned_cols=324 Identities=19% Similarity=0.165 Sum_probs=242.1
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
..++++.+++||||||.||++.++|.++..+......... ..++.++|++++..+..+..+.....+.++..|++++.
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~--~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 150 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIR--AAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP 150 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHH--HcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence 4567888999999999999999999998766544433211 35678889998877665444433345667888999988
Q ss_pred eCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCC--CCCccceeecccCCCCHHHHHHHHHhCCCCeeecccc
Q 037622 280 MRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGN--SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYG 357 (560)
Q Consensus 280 ~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~--~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG 357 (560)
.+..++..+++.|++++||++.++|+++..|++... ..+. ...++|.++++||++++++++.+.+.| ++++++.||
T Consensus 151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~-~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG 228 (422)
T TIGR02155 151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELK-RMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYG 228 (422)
T ss_pred cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHH-HcCCCcccCceEEEEEeCCcCCHHHHHHHHHHh-CCceEeccc
Confidence 877788999999999999999999999999987532 2222 235899999999999999999999999 899999999
Q ss_pred hhhccc--ccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCc
Q 037622 358 MTESTA--VGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGW 435 (560)
Q Consensus 358 ~tE~~~--~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 435 (560)
+||+++ ++..+... ..+ ...+.+++.++|+|+++++++++|+.|||++++.. ...+ ..+|
T Consensus 229 ~tE~~~~~~~~~~~~~----~~g-~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~~------------~~~~-p~~r 290 (422)
T TIGR02155 229 LSEVIGPGVAMECVET----QDG-LHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTLT------------KEAL-PVIR 290 (422)
T ss_pred chhhcCCceeeccccc----CCC-ceEecCeeEEEEECCCCCCCCCCCCeeEEEEecCC------------cccc-ceee
Confidence 999853 22222110 111 11223467788999888999999999999999742 1223 4579
Q ss_pred eecCceEEEccC-C-----cEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCC
Q 037622 436 LHTGDIAYFDED-G-----YLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS 509 (560)
Q Consensus 436 ~~TGD~~~~~~~-g-----~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 509 (560)
|+|||+++++++ | .+++.||.+|+|+++|.+|+|.+||.+|.++|+|.....+........+.+++.|+..++.
T Consensus 291 y~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~ 370 (422)
T TIGR02155 291 YRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPES 370 (422)
T ss_pred EEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCc
Confidence 999999999875 4 4689999999999999999999999999999999844444344443345666666655332
Q ss_pred CC-C--------HHHHHHHHHhccCCCCCcceEEE--ecCCCCCCCCcchH
Q 037622 510 TL-T--------EAAVIDYLAQRVAPYKKVRRVVF--TKSIPKSAAGKVLR 549 (560)
Q Consensus 510 ~~-~--------~~~l~~~~~~~l~~~~~p~~i~~--~~~lP~t~~GKi~r 549 (560)
.. . .++|++++++.+..+. .|.+ +++||+|+ ||++|
T Consensus 371 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~v~~~~~~~lp~~~-GK~~~ 417 (422)
T TIGR02155 371 YTLRLHEQASLLAGEIQHTIKQEVGVSM---DVHLVEPGSLPRSE-GKARR 417 (422)
T ss_pred ccccchHHHHHHHHHHHHHHHhccCcEE---EEEEECCCCccCCC-CCceE
Confidence 11 1 3567788888776653 2444 47999988 99876
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=293.51 Aligned_cols=470 Identities=20% Similarity=0.209 Sum_probs=312.2
Q ss_pred ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCC----HHHHHHHHHhcCC
Q 037622 66 YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLS----VSEIKKQVTLCKT 141 (560)
Q Consensus 66 ~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~----~~~l~~~l~~~~~ 141 (560)
.++||++.+..++.++..|.. .|...|+.|++++..+.++++..++++++|..+++++|.++ ++.+..+......
T Consensus 68 ~~~t~r~~~~~~n~~~q~l~~-~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s 146 (1032)
T KOG1178|consen 68 DSFTYRLIRLLSNIIAQFLVS-LGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTS 146 (1032)
T ss_pred cchhhhhhhcccchhHHHhhh-cccccCceEEEeccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhhee
Confidence 689999999999999999999 89999999999999999999999999999999999999999 3322222211111
Q ss_pred ceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhh
Q 037622 142 KISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAE 221 (560)
Q Consensus 142 ~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~ 221 (560)
+..-+......-.+......+-..++ . ....+.... .......-....++..+.+.||||+||.||+|.
T Consensus 147 -~~~~i~~~l~i~~~~~~~~~~~~sv~--------~-~~~~f~~~~-~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~ 215 (1032)
T KOG1178|consen 147 -VELEIVRRLNIIDILLNSLFPKLSVE--------T-IADSFQMVL-HNEDTREIRVGGNDSTALLSFTSGSTGVPKGVA 215 (1032)
T ss_pred -ccceehhhhhhHHHHhhccccccchh--------h-ccchhhhhh-ccCCCcceeeecccccceEeecccccccccccc
Confidence 00001110000000000000000000 0 001111111 111111222345677889999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChh-hHHhHHHHHHHHhhCCCEEEEeCCc---CHHHHHHHHHHhCc
Q 037622 222 LTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMF-HIYGLSLFALGLLSLGPSVVVMRRF---EASEMLKVIDKYGV 297 (560)
Q Consensus 222 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~g~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~l~~~~~ 297 (560)
.+|..+.+...+... .+..+..+++ .+.+.. .+-.......+.+..|+.+..+... ++.++.+.++++++
T Consensus 216 ~~~~sl~~~fdw~~~-----~f~~t~s~~~-~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i 289 (1032)
T KOG1178|consen 216 GTHFSLANAFDWMFT-----TFPPTGSDRF-TFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGI 289 (1032)
T ss_pred hhHHHHHhhhhhccc-----cCCcCccchh-hhhheeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhh
Confidence 999999988777665 3556666654 322221 2222222444555666656655432 37899999999999
Q ss_pred ceeccCcHHHHHHHHhhhcc---------C---CCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhccccc
Q 037622 298 THFPVVPPILMALTKAAKGL---------C---GNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVG 365 (560)
Q Consensus 298 t~l~~~P~~~~~l~~~~~~~---------~---~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 365 (560)
+..+.+|++.++++...... . ....+.|+...++||+.+..++..+...+...-...-|++++.....
T Consensus 290 ~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~ 369 (1032)
T KOG1178|consen 290 TVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLV 369 (1032)
T ss_pred eeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccce
Confidence 99999999988887652210 0 11224789999999999999999777776544455558888877665
Q ss_pred ccCCCCCCCC--cccccccccC-------CeEEEEEeCCCCccCCCCCcceEEEec----ccchhhhcCCchhhhhcc--
Q 037622 366 TRGFNTKKFS--KYFSVGLLAP-------NIQAKVVDWVNGCFLPPGSTGELWLRG----PGTMKEYINNADATMSTI-- 430 (560)
Q Consensus 366 ~~~~~~~~~~--~~~~~G~~~p-------~~~~~v~d~~~~~~~~~g~~Gel~v~~----~~~~~gy~~~~~~~~~~~-- 430 (560)
......+... ....+..+.. ...+.... ..+.+.+.++.+.....+ ..+..| +..++.....+
T Consensus 370 s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~ 447 (1032)
T KOG1178|consen 370 SYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLT 447 (1032)
T ss_pred eHHhhCcccceecceeEEeccchhhccCCCcceeeee-ccCcccCCcccceeecccccccceeecc-ccchhhcCCcccc
Confidence 5432221100 0001111111 11122222 223333333322222222 222233 23333322221
Q ss_pred ---CCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecC
Q 037622 431 ---DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD 507 (560)
Q Consensus 431 ---~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 507 (560)
..+.+|+|||.|+.-.+|.+.+.||.|++||.+|+|+...+|+..+..+|.|.++.+....+...++.+++|+++..
T Consensus 448 ~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~ 527 (1032)
T KOG1178|consen 448 VDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERG 527 (1032)
T ss_pred cccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccC
Confidence 23458999999999899999999999999999999999999999999999999999999999888999999999876
Q ss_pred CCC-CCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 508 GST-LTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 508 ~~~-~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
+.. ....+++.++...|+.|++|..+++++++|+|++||||+++|.+.
T Consensus 528 ~~~~~~~~~i~~~l~~~La~y~vPs~~V~l~~vPl~~~GKvDkkaL~~~ 576 (1032)
T KOG1178|consen 528 GSKSVLIRDIRNYLKKELASYMLPSLVVPLAKVPLNPNGKVDKKALLEY 576 (1032)
T ss_pred CCCchhHHHHHHhhcccccceecceEEEEhhhCCcCCCCCcChhhhhhh
Confidence 533 335789999999999999999999999999999999999999983
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=271.00 Aligned_cols=330 Identities=16% Similarity=0.106 Sum_probs=225.0
Q ss_pred CCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEE
Q 037622 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278 (560)
Q Consensus 199 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 278 (560)
+..++++.+++||||||.||+|.+||.++............ ..+++++|+++.+.+..+..+.....+.+...|++++
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~--~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi 160 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFV--SQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSII 160 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHH--HcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEE
Confidence 34568889999999999999999999998876655544221 3467889999999998777665445566778888876
Q ss_pred EeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccC-CCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccc
Q 037622 279 VMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLC-GNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYG 357 (560)
Q Consensus 279 ~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG 357 (560)
.... ....++.++++++|.+.++|+.+..|++...... .....++|.+++|||++++++++.+.+.| ++++++.||
T Consensus 161 ~~~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG 237 (445)
T TIGR03335 161 PEGK--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYG 237 (445)
T ss_pred cCCc--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCC
Confidence 5443 3467899999999999999999988876522221 11246899999999999999999999998 899999999
Q ss_pred hhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCcee
Q 037622 358 MTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLH 437 (560)
Q Consensus 358 ~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~ 437 (560)
+||++. +..+... .....+.+.+.++|+|++++.++++|+.|||++++-...-. ++. . +==.|+
T Consensus 238 ~TE~~~-~~~c~~~------~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~~----r~~-~----PliRYr 301 (445)
T TIGR03335 238 STEGTM-CGECQAV------AGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPGE----RCG-S----LLINYD 301 (445)
T ss_pred hhhhhh-eEEecCC------CCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCCc----cCC-c----eEEEee
Confidence 999863 3222111 11233445688999998888999999999999987521000 000 0 001299
Q ss_pred cCceEEEcc-C----C----cEEEEccccceeeecceecChHHHHHHHhcC---CCcc-cEEEEcccCCCCCceEEEEEE
Q 037622 438 TGDIAYFDE-D----G----YLYIVDRLKEVIKYNGYQISPADLETVLICH---PEIL-DVAVTGAMDKVLGEIPVAFVV 504 (560)
Q Consensus 438 TGD~~~~~~-~----g----~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~---~~v~-~~~v~~~~~~~~~~~~~~~v~ 504 (560)
|||++++.. + | ++...||.||+++++|.+|+|.+||++|.+. +++. +..++...++...+.+.+.+.
T Consensus 302 tgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e 381 (445)
T TIGR03335 302 TEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGEEEGEITLRVSLE 381 (445)
T ss_pred cCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecCCCCCceEEEEEE
Confidence 999999732 2 2 2455799999999999999999999999995 5553 344443333221223444444
Q ss_pred ecCCCCCCHHHHHHHHHhc----cCC-------CCCcceEEEe--cCCCCCC-CCcchH
Q 037622 505 RRDGSTLTEAAVIDYLAQR----VAP-------YKKVRRVVFT--KSIPKSA-AGKVLR 549 (560)
Q Consensus 505 ~~~~~~~~~~~l~~~~~~~----l~~-------~~~p~~i~~~--~~lP~t~-~GKi~r 549 (560)
..++.....+++.+.+.+. ++. ..+.-.+.++ ..||+++ .||..|
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r 440 (445)
T TIGR03335 382 CEDKDNCSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR 440 (445)
T ss_pred ecCcccchHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence 4443333344444444443 211 1112223444 5799984 688655
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=253.92 Aligned_cols=492 Identities=18% Similarity=0.255 Sum_probs=341.8
Q ss_pred CCHHHHHhccCC--CCceEEEE----CCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 037622 42 LDVDSFIFSHKH--NGRTALVD----SLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~----~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 115 (560)
.++.+++...++ ++.+|+.. +.++.++||++|..+|.+++..|..+..+++||+|++++++++|++++++||+.
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly 849 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY 849 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence 567776655554 55788774 334579999999999999999999977799999999999999999999999999
Q ss_pred hCCeEeccCCC------CCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC---------CCEEEecCCCcccccCCCc
Q 037622 116 LGAIVIPMNPL------LSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT---------TPVVAVPENLVNDFKEGRF 180 (560)
Q Consensus 116 ~G~~~v~l~~~------~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~---------~~vi~~~~~~~~~~~~~~~ 180 (560)
+|++++|+.|- -....+..+++..+. ..++++......+..... ..+.+.++..
T Consensus 850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv--~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~--------- 918 (1363)
T KOG3628|consen 850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKV--AAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLP--------- 918 (1363)
T ss_pred cCeeeeccCCccHHhhhhhhHHHHHHHHHhhh--heEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccc---------
Confidence 99999999973 234677888999999 999998876555443221 1111111110
Q ss_pred ccHHHhhcc---cCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecCh
Q 037622 181 SDFHKLIAG---KFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPM 257 (560)
Q Consensus 181 ~~~~~~~~~---~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 257 (560)
..+...... ......+...+++.+|++-+.--++|.--++.++|..+++....... ...+.+..-++.+.++
T Consensus 919 ~t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe-----~~~l~~~rpl~~~~~~ 993 (1363)
T KOG3628|consen 919 ETIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKE-----TCQLYKSRPLLGCSSP 993 (1363)
T ss_pred hhhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHH-----HHccccCCceEEEecC
Confidence 001111111 01111122335678899888888999999999999999999888876 4567777778888888
Q ss_pred hhHHhHHHHHHHHhhCCCEEEEeCC----cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCcc------ce
Q 037622 258 FHIYGLSLFALGLLSLGPSVVVMRR----FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSL------KQ 327 (560)
Q Consensus 258 ~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l------r~ 327 (560)
+...|+....+..++.|.+.++.++ .++..|+..++++++.-++.+-..+..+... .......++.. ..
T Consensus 994 ~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~-l~t~~enl~~~gnn~s~s~ 1072 (1363)
T KOG3628|consen 994 YSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKG-LETSVENLSKRGNNTSSSI 1072 (1363)
T ss_pred ccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhc-cccccchhhhhhcccccce
Confidence 8888888888899999988777764 5788999999999999999988888877654 22112222111 22
Q ss_pred eecccCCCCHHHHHHHHHhCCCC-----eeecccchhhcccccccCCCCCC-------------------------CCcc
Q 037622 328 VSSGAAPANSKIIEDFVGAFPHV-----DFIQGYGMTESTAVGTRGFNTKK-------------------------FSKY 377 (560)
Q Consensus 328 ~~~~g~~~~~~~~~~~~~~~~~~-----~i~~~YG~tE~~~~~~~~~~~~~-------------------------~~~~ 377 (560)
++..-+.....+.+.+.+.|... .+...|++-=.-.++.....+.. ....
T Consensus 1073 vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L 1152 (1363)
T KOG3628|consen 1073 VVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLL 1152 (1363)
T ss_pred eeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCcccc
Confidence 33344555567777777776321 13333443322222222111000 0011
Q ss_pred cccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhh-hhcc---------CCCCceecCceEEEcc-
Q 037622 378 FSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT-MSTI---------DKEGWLHTGDIAYFDE- 446 (560)
Q Consensus 378 ~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~-~~~~---------~~~~~~~TGD~~~~~~- 446 (560)
...|...++.++.|++||+..+|.+|+.||||+.+.+.+.+|+.-.+.. .+.| .+..|-||||+|++..
T Consensus 1153 ~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t 1232 (1363)
T KOG3628|consen 1153 YDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRT 1232 (1363)
T ss_pred ccCCcccccceeEEeCCccccccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeee
Confidence 2348888999999999999999999999999999998888877542221 1111 3456999999999952
Q ss_pred -----C----CcEEEEccccceeeecceecChHHHHHHHh-cCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHH
Q 037622 447 -----D----GYLYIVDRLKEVIKYNGYQISPADLETVLI-CHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAV 516 (560)
Q Consensus 447 -----~----g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 516 (560)
+ .-+|++|-.++.+.++|.+.+|.+||..+. .||.|.+|+|+.... .+|+++.. .+ +....+|
T Consensus 1233 ~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~g-----lvVvviE~-~g-q~~~~~L 1305 (1363)
T KOG3628|consen 1233 SLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQATG-----LVVVVIEC-HG-QQELADL 1305 (1363)
T ss_pred ecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeCC-----eEEEEEEe-cC-chhHhhh
Confidence 2 358999999999999999999999998875 679999999996533 23443333 33 3333444
Q ss_pred HHHH-HhccCCCCCc-ceEEEec--CCCCCCCCcchHHHHHHHHh
Q 037622 517 IDYL-AQRVAPYKKV-RRVVFTK--SIPKSAAGKVLRRELRKFLT 557 (560)
Q Consensus 517 ~~~~-~~~l~~~~~p-~~i~~~~--~lP~t~~GKi~r~~L~~~~~ 557 (560)
.-.+ ...|..+.++ ..+.+++ .+|+++.|..+|..+++.+.
T Consensus 1306 vPlIv~~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~ 1350 (1363)
T KOG3628|consen 1306 VPLIVNVVLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWL 1350 (1363)
T ss_pred hHHHHHHHHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHH
Confidence 4333 3445555544 4466664 69999999999988877653
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=236.68 Aligned_cols=326 Identities=20% Similarity=0.190 Sum_probs=239.5
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
..++...|..||||||+|+.+.+|+..+..+...+++.+. ..+...+|++..+.......|-....+++-..|++++.
T Consensus 88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~--~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip 165 (438)
T COG1541 88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLY--SAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP 165 (438)
T ss_pred cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHH--HccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence 4466777999999999999999999999888888877554 46677888888877743333333355566667888877
Q ss_pred eCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccC-CCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccch
Q 037622 280 MRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLC-GNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGM 358 (560)
Q Consensus 280 ~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~ 358 (560)
..+-+.+.-+++++++++|++.++|+.+..|++...+.. ...-.++|.+++|+|+++++.++.+.+.| ++..++.||+
T Consensus 166 ~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYGl 244 (438)
T COG1541 166 ISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYGL 244 (438)
T ss_pred cCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHh-CCceeecccc
Confidence 766688999999999999999999999999998854442 23446899999999999999999999999 9999999999
Q ss_pred hhccccc-ccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCcee
Q 037622 359 TESTAVG-TRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLH 437 (560)
Q Consensus 359 tE~~~~~-~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~ 437 (560)
||..+.+ ..|.... .....-+...++++||++++++++|+.|||+++.-. + ..+ +--.|+
T Consensus 245 tE~~g~g~~eC~~~~------glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~-------~-----~~~-PlIRYr 305 (438)
T COG1541 245 TEGFGPGAGECTERN------GLHIWEDHFIFEIVDPETGEQLPDGERGELVITTLT-------K-----EGM-PLIRYR 305 (438)
T ss_pred ccccCCccccccccc------CCCcchhhceeeeecCCcCccCCCCCeeEEEEEecc-------c-----cCc-ceEEEE
Confidence 9987663 3332211 223345678899999999999999999999998642 0 000 111399
Q ss_pred cCceEEEccC----Cc-----EEEEccccceeeecceecChHHHHHHHhcCCCcc-cEEEEcccCCCCCceEEEEEEecC
Q 037622 438 TGDIAYFDED----GY-----LYIVDRLKEVIKYNGYQISPADLETVLICHPEIL-DVAVTGAMDKVLGEIPVAFVVRRD 507 (560)
Q Consensus 438 TGD~~~~~~~----g~-----l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~-~~~v~~~~~~~~~~~~~~~v~~~~ 507 (560)
|||+..+.++ |+ ..+.||.||++++.|.+|+|..||++|.+.+.+. +..++... +...+.+.+.|...+
T Consensus 306 tgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~L~V~vE~~~ 384 (438)
T COG1541 306 TGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDELTVRVELEN 384 (438)
T ss_pred cCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCceEEEEEEecC
Confidence 9999999764 32 5799999999999999999999999999999998 77777665 344455666666665
Q ss_pred CCCCCHHHHH--HHHHhccCC--CCCcce-EEEecCCCCCCCCcchH
Q 037622 508 GSTLTEAAVI--DYLAQRVAP--YKKVRR-VVFTKSIPKSAAGKVLR 549 (560)
Q Consensus 508 ~~~~~~~~l~--~~~~~~l~~--~~~p~~-i~~~~~lP~t~~GKi~r 549 (560)
+......+.+ ..+...+-. ...+.. ++.+.++||+.. |..|
T Consensus 385 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~v~~g~l~r~~~-K~kr 430 (438)
T COG1541 385 EAEELEDERRLAKKLIKNIKSELGVRVEVELVEPGELPRTEG-KAKR 430 (438)
T ss_pred cccchHHHHHHHHHHHHHHHhhcCCceEEEEEeccceecccC-ceeE
Confidence 4211121111 233322211 112222 555579999964 6443
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=197.82 Aligned_cols=210 Identities=19% Similarity=0.101 Sum_probs=158.6
Q ss_pred CCCceEEEE-CC---CCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCC
Q 037622 53 HNGRTALVD-SL---SGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLS 128 (560)
Q Consensus 53 ~~~~~a~~~-~~---~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~ 128 (560)
+++++|++. ++ ++.++||+||.++++++|+.|.+.+|+++||+|+|+++|+++++++++|++++|++++|++
T Consensus 9 ~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp~n---- 84 (227)
T TIGR03089 9 DPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVLAG---- 84 (227)
T ss_pred CCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEeCC----
Confidence 467899873 22 2458999999999999999998624999999999999999999999999999999999995
Q ss_pred HHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCccc----ccCCCcccHHHhhcccCCCCCCC-CCCCCC
Q 037622 129 VSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVND----FKEGRFSDFHKLIAGKFDLVERP-VIRQQD 203 (560)
Q Consensus 129 ~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 203 (560)
.+++ ++++++++........ ..++.+....... ....+..++.+..........+. ...++|
T Consensus 85 ---------~s~a--~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 151 (227)
T TIGR03089 85 ---------DPDA--DVVVTGPDRLAAAAGS--GEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGDQFAPYEPPDATA 151 (227)
T ss_pred ---------CCCC--CEEEeCcchhhhcccC--CceEEEeccccccCCCCCCCCcccchhhhhhccCCCCCCCCCCCCCc
Confidence 5677 8899888776664322 2333332110000 01222335555444322222222 456789
Q ss_pred EEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCc
Q 037622 204 TAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRF 283 (560)
Q Consensus 204 ~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~ 283 (560)
++.++||||+ +|.++..+. . ..+++++|+++ .+|++|.+|+...++.++..|+++++.++|
T Consensus 152 ~a~l~yTsg~---------~~~~~~~~~----~-----~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~rF 212 (227)
T TIGR03089 152 PALVAGGGEW---------TGAELVAAA----R-----AAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTHP 212 (227)
T ss_pred ceeeeccccc---------cHHHHHHHH----h-----hcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecCC
Confidence 9999999986 555655443 1 46688999999 999999999988899999999999999999
Q ss_pred CHHHHHHHHHHhCcc
Q 037622 284 EASEMLKVIDKYGVT 298 (560)
Q Consensus 284 ~~~~~~~~l~~~~~t 298 (560)
++..+++.++++|+|
T Consensus 213 d~~~~l~~i~~~~vT 227 (227)
T TIGR03089 213 DPARLDQIAETERVT 227 (227)
T ss_pred CHHHHHHHHHhhcCC
Confidence 999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-22 Score=195.40 Aligned_cols=119 Identities=25% Similarity=0.276 Sum_probs=110.8
Q ss_pred CCCceecCceEEE-ccCCcEEEEccccceeeecc---eecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecC
Q 037622 432 KEGWLHTGDIAYF-DEDGYLYIVDRLKEVIKYNG---YQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD 507 (560)
Q Consensus 432 ~~~~~~TGD~~~~-~~~g~l~~~GR~~d~i~~~G---~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 507 (560)
.+|||+|||+|++ |++|+++|.||.+ +| ++|+|. ||++|.+||+|.+|+|++++++..|+.++|+|++..
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~ 280 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL 280 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC
Confidence 6899999999998 7999999999998 78 799999 999999999999999999999999999999999764
Q ss_pred CCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 508 GSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 508 ~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
..+.++++++|+++|+. ++|+.++++++||+|++||++|++|++.+.++
T Consensus 281 --~~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~~ 329 (365)
T PRK09188 281 --PADEKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMNQ 329 (365)
T ss_pred --CCCHHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhcc
Confidence 46778999999999999 99999999999999999999999999987543
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-19 Score=182.14 Aligned_cols=477 Identities=19% Similarity=0.215 Sum_probs=319.1
Q ss_pred ceEEEE-CCCC--ceecHHHHHHHHHHHHH-HHHHhhCCCCCCEEEEEcCCC--ChHHHHHHHHHHhCCeEeccCCCCCH
Q 037622 56 RTALVD-SLSG--YSISYPQLFPLVQSVAS-GLRHHFGISQGDAVLLLLPNS--IYFPVIFLALLYLGAIVIPMNPLLSV 129 (560)
Q Consensus 56 ~~a~~~-~~~~--~~~Ty~el~~~v~~la~-~L~~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~ 129 (560)
..|.+. +..| ..+||..+..++.++|+ .|.+ -|+.++|+|.++...+ +++++..++|...|.+++|+.+..+.
T Consensus 110 ~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~k-sgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~ 188 (1363)
T KOG3628|consen 110 STAHICIDKKGKATSITWDKLLNRAEKVAHVELNK-SGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSS 188 (1363)
T ss_pred CceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhc-cCCCCCcEEEEEEEhhhhhHHhhhhccccccceeeccchhhhhh
Confidence 566653 2223 58999999999999999 5555 7999999999988665 79999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhccc----CCCCCCCCCCCCCEE
Q 037622 130 SEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGK----FDLVERPVIRQQDTA 205 (560)
Q Consensus 130 ~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a 205 (560)
+++..+++.... .++++.......+....... .......+....+-. -+....+...-. ..
T Consensus 189 ~el~~i~~~~~~--~~~l~t~a~~r~~~~~~~~~------------s~~k~v~~w~t~~~k~~~~~~k~~~P~~~~~-~~ 253 (1363)
T KOG3628|consen 189 EELKDIVNPTPE--RVALTTEAGERAFINDNSPV------------SLAKAVAWWKTNDFKGNYTKDKIKKPRMQLP-YG 253 (1363)
T ss_pred hhhhcccCCCcc--ceEeehhhhHHHhhhccCcc------------cHHHHHHhhhcccccceeehhhccCCceeee-eE
Confidence 999999999999 88888776655544322100 000000111000000 000111122222 78
Q ss_pred EEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhh---------------cccccCCCCcEEEEecChhhHHhHHHHHHHH
Q 037622 206 AILYSSGTTGASKGAELTHGNFIAAVELFVRFEA---------------SQYEYLSSEAVFLAVLPMFHIYGLSLFALGL 270 (560)
Q Consensus 206 ~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~ 270 (560)
+|-||.+++|.--+++++|. +..+.+......+ .........+.++....+....|+.++++.+
T Consensus 254 ~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~a 332 (1363)
T KOG3628|consen 254 YIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVA 332 (1363)
T ss_pred EEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhhhh
Confidence 89999999999999999987 5444433322110 0012335567777788888889999999999
Q ss_pred hhCCCEEEEeCC---cCHHHHHHHHHHhCcceeccCcHHHHHHHHhh----------hccCCCCCCccceeecccCCCCH
Q 037622 271 LSLGPSVVVMRR---FEASEMLKVIDKYGVTHFPVVPPILMALTKAA----------KGLCGNSLKSLKQVSSGAAPANS 337 (560)
Q Consensus 271 l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~----------~~~~~~~l~~lr~~~~~g~~~~~ 337 (560)
+.+|.|.+..+. +.|..+.+++.+++++++..-...+.+..... .+....+++++|.+++.-+.+..
T Consensus 333 lfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~ 412 (1363)
T KOG3628|consen 333 LFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGCMVTCTAVDT 412 (1363)
T ss_pred hhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeeeEEeeeecch
Confidence 999999999886 67888999999999999887755555443221 11223467899999999999888
Q ss_pred HHHHHHHHhC----C-----------------CCeeecccchhhcccccccCCCCCC-----------------------
Q 037622 338 KIIEDFVGAF----P-----------------HVDFIQGYGMTESTAVGTRGFNTKK----------------------- 373 (560)
Q Consensus 338 ~~~~~~~~~~----~-----------------~~~i~~~YG~tE~~~~~~~~~~~~~----------------------- 373 (560)
+..+-....+ + |.-....=+++|.+......+....
T Consensus 413 ~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~ 492 (1363)
T KOG3628|consen 413 EFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDT 492 (1363)
T ss_pred HHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcc
Confidence 7765555443 1 1112223344666654433322100
Q ss_pred -----CCcccccccccCC-eEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhcc------------CCCCc
Q 037622 374 -----FSKYFSVGLLAPN-IQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI------------DKEGW 435 (560)
Q Consensus 374 -----~~~~~~~G~~~p~-~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~------------~~~~~ 435 (560)
......+|...|| +.+.++++++.+.|..+++|||||.++++..+|+.-+..|...| ....|
T Consensus 493 e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~F 572 (1363)
T KOG3628|consen 493 EDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPF 572 (1363)
T ss_pred hhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchh
Confidence 0011234665655 66788998999999999999999999999999998887776665 11237
Q ss_pred eecCceEEEccCCcEEEEccccceeee-cceecChHH----------HHHHHhcCCCcccEEEEcccCCCCCceEEEEEE
Q 037622 436 LHTGDIAYFDEDGYLYIVDRLKEVIKY-NGYQISPAD----------LETVLICHPEILDVAVTGAMDKVLGEIPVAFVV 504 (560)
Q Consensus 436 ~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~~----------IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 504 (560)
.|||-+|+++ +|.++++|-++|++.. .|.+.+..+ |+-+.+..+.|.++.++- .+.+++++.
T Consensus 573 mRtGLlGFv~-~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~------~E~~~Vv~~ 645 (1363)
T KOG3628|consen 573 MRTGLLGFVH-NGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE------DEHIVVVVL 645 (1363)
T ss_pred hhhcceeeee-CCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee------cceEEEEEE
Confidence 9999999995 5567777766776665 888776554 344556678888888885 233444444
Q ss_pred ecCCCCCCHH---HHHHHHHhccCCCCCcce----EEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 505 RRDGSTLTEA---AVIDYLAQRVAPYKKVRR----VVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 505 ~~~~~~~~~~---~l~~~~~~~l~~~~~p~~----i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
..+.. .++ +.+..+-+.+........ +++-+.||||+-|-|.-.++++.|.+
T Consensus 646 esP~a--~e~~~~q~~~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~~ 704 (1363)
T KOG3628|consen 646 ESPDA--TEENSFQWMSRVFQALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFLE 704 (1363)
T ss_pred eCcch--hhhhhhhHHHHHHHHHHHHhcccceEEEEeccccCCCccccccccHHHHHHHHc
Confidence 44332 222 233333333433333333 34447899999988999999999875
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-18 Score=170.88 Aligned_cols=246 Identities=16% Similarity=0.056 Sum_probs=161.0
Q ss_pred EEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEec-ChhhHHhHHHHHHHHhhCC-CEEEEeC
Q 037622 204 TAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVL-PMFHIYGLSLFALGLLSLG-PSVVVMR 281 (560)
Q Consensus 204 ~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~g~~~~~~~~l~~G-~~~v~~~ 281 (560)
-..+..||||||.|-.+..+................ +.++..++++..+. .-.+.+ ..+... ..+.+.+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~--~~g~~~g~r~a~~~~~~~~ly-------~~~~~~~~~~~~~~ 171 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVL--PDGLFAKHRIAFFLRADNNLY-------QSVNNRWISLDFFD 171 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhC--ccccccCCcEEEEEccChhHH-------HHHHhccceeeecC
Confidence 356778999999999999999876544333322111 23444545555442 111111 111111 1122222
Q ss_pred -CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhh
Q 037622 282 -RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTE 360 (560)
Q Consensus 282 -~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE 360 (560)
..+.+..++.|++++|+.+.+.|+.+..|++...+ .+.. ..++.++++||.+++..++.+.+.| ++++++.||+||
T Consensus 172 l~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~-~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE 248 (430)
T TIGR02304 172 LLAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVME-GELT-IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE 248 (430)
T ss_pred CCcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHh-cCCC-CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch
Confidence 24688999999999999999999999999986333 2323 4789999999999999999999999 899999999999
Q ss_pred cccccccCCCCCCCCcccccccccCCeEEE--EEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceec
Q 037622 361 STAVGTRGFNTKKFSKYFSVGLLAPNIQAK--VVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHT 438 (560)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~--v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~T 438 (560)
|.++..|... ....--..+.++ ++|++ ++ ++.+|++-.. . +. +---|+|
T Consensus 249 -g~la~eC~~g-------~lHl~ed~~~vE~~ivD~~-~~-------~~~ViT~L~n-------~--~~----PlIRYrt 299 (430)
T TIGR02304 249 -GFLASTCRCG-------TLHLNEDLVHIEKQYLDEH-KR-------FVPIITDFTR-------T--TQ----PIVRYRL 299 (430)
T ss_pred -hheEEecCCC-------CEEEccccEEEEeeEECCC-Cc-------eEEEEecCCC-------c--cc----eEEeeeC
Confidence 6665554221 122222344555 78843 32 4457765311 0 00 0012999
Q ss_pred CceEEEccC----Cc----E-EEEccccceeee---ccee--cChHHHHHHH-hcCCCcccEEEEcc
Q 037622 439 GDIAYFDED----GY----L-YIVDRLKEVIKY---NGYQ--ISPADLETVL-ICHPEILDVAVTGA 490 (560)
Q Consensus 439 GD~~~~~~~----g~----l-~~~GR~~d~i~~---~G~~--v~~~~IE~~l-~~~~~v~~~~v~~~ 490 (560)
||++...++ |. + .+.||.+|++++ +|.. ++|..++..+ ...++|.++.++..
T Consensus 300 GD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~ 366 (430)
T TIGR02304 300 NDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQT 366 (430)
T ss_pred CCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEc
Confidence 999988544 32 3 489999999985 4544 5899999874 45789999888754
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.7e-13 Score=97.95 Aligned_cols=70 Identities=39% Similarity=0.607 Sum_probs=61.9
Q ss_pred HHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcc--eEEEecC-CCCCCCCc
Q 037622 471 DLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVR--RVVFTKS-IPKSAAGK 546 (560)
Q Consensus 471 ~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~--~i~~~~~-lP~t~~GK 546 (560)
|||+++.++|+|.+|+|++.+++..|+.+++++++ +.++++++++++|++|++|+ .++.+++ ||+|++||
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~GK 73 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPSGK 73 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETTSS
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhhhCCCcceeeEEEEccccCcCCCCCCCC
Confidence 79999999999999999999999999999999998 45899999999999999994 4555577 99999998
|
... |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-10 Score=113.46 Aligned_cols=232 Identities=16% Similarity=0.156 Sum_probs=139.9
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccC-CCCcEEEEecChhhH---HhH-HHHHHHHhhCC
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYL-SSEAVFLAVLPMFHI---YGL-SLFALGLLSLG 274 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~---~g~-~~~~~~~l~~G 274 (560)
.++++..++.||||||.|--+.+.+..+..+...+...... +... ...-.++...|-... .+. ..........+
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~-~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~ 165 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQH-FLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG 165 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHh-hcccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence 34567788999999999876767666665555444432211 1122 122234444443221 111 11222233444
Q ss_pred CEEEEeC-CcCHHHHHHHHH----HhCcceeccCcHHHHHHHHhhhcc-CCCCCC-ccceeeccc------CCCC-HHHH
Q 037622 275 PSVVVMR-RFEASEMLKVID----KYGVTHFPVVPPILMALTKAAKGL-CGNSLK-SLKQVSSGA------APAN-SKII 340 (560)
Q Consensus 275 ~~~v~~~-~~~~~~~~~~l~----~~~~t~l~~~P~~~~~l~~~~~~~-~~~~l~-~lr~~~~~g------~~~~-~~~~ 340 (560)
+.-.+-. .++.+.++..+. +.++..+++.|.++-.++....+. ....++ ..+.+..|| +.++ +++.
T Consensus 166 ~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~ 245 (365)
T PF04443_consen 166 SRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFY 245 (365)
T ss_pred ceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHH
Confidence 4433322 367777776664 446888999888877766542222 122333 345555665 4575 5777
Q ss_pred HHHHHhCCCC----eeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccch
Q 037622 341 EDFVGAFPHV----DFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTM 416 (560)
Q Consensus 341 ~~~~~~~~~~----~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~ 416 (560)
+.+.+.| |+ .+++.||+||.....+.+.... ...|.. +.+.|+++.++++.|+.|-|.+-.+...
T Consensus 246 ~~l~~~~-Gv~~~~~i~~~ygmtEl~s~~~~~~~~~---------~~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl~~~ 314 (365)
T PF04443_consen 246 ARLQEVF-GVIPIENIYDMYGMTELNSQAYECGHGH---------FHVPPW-VIIRDPETLEPLPPGETGLIQVIDLANT 314 (365)
T ss_pred HHHHHHH-CCCCHHHeeeeeeccccchhheeCCCCc---------ccCCCe-EEEECCCCCcCCCCCCeeEEEEEccccc
Confidence 8888888 65 7999999999887655442211 122222 6777999999999999999998765322
Q ss_pred hhhcCCchhhhhccCCCCceecCceEEEccC--------CcEEEEcccc
Q 037622 417 KEYINNADATMSTIDKEGWLHTGDIAYFDED--------GYLYIVDRLK 457 (560)
Q Consensus 417 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~--------g~l~~~GR~~ 457 (560)
. .-+..-|.|+|.+..+ .++.++||.+
T Consensus 315 -s-------------~p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~ 349 (365)
T PF04443_consen 315 -S-------------YPGFILTEDLGVLHGDDDCGCRKGKYFEVLGRAD 349 (365)
T ss_pred -C-------------CCcEEEEcceeeecCCCCCCCccCCEEEEEeCCC
Confidence 1 1234779999988654 2689999976
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.1e-08 Score=102.10 Aligned_cols=178 Identities=17% Similarity=0.119 Sum_probs=98.3
Q ss_pred CCccceeecccCCCCHHHHHHHHHhCCCCe-eecccchhhcccccccCCCCCCCCcccccccccCC-eEEEEEeCCCC--
Q 037622 322 LKSLKQVSSGAAPANSKIIEDFVGAFPHVD-FIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPN-IQAKVVDWVNG-- 397 (560)
Q Consensus 322 l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~-i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~-~~~~v~d~~~~-- 397 (560)
+++|+.+.+-+..-.....+++++.+|+++ +...|++||+-.. . .... .. ..+...|+ .-.+.++.++.
T Consensus 266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~-i-~~~~---~~--~~~~l~~~~~ffEFip~~~~~~ 338 (528)
T PF03321_consen 266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIG-I-PLDP---ED--PGYVLAPDSGFFEFIPVDEDEQ 338 (528)
T ss_dssp STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEE-E-ES-C---CC----EEE-TTSSEEEEEE-STT--
T ss_pred CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEE-E-ecCC---CC--CceEeecCCeEEEEEeccCCcc
Confidence 678886555444444566788888887755 4568999995332 2 1110 11 11223332 24555554331
Q ss_pred -----------ccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEcc--CC--cEEEEccccceeee
Q 037622 398 -----------CFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDE--DG--YLYIVDRLKEVIKY 462 (560)
Q Consensus 398 -----------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~--~g--~l~~~GR~~d~i~~ 462 (560)
..+..|+.-||+++.. .|.|+ |+.||++++.. ++ .+.|+||.+.++.+
T Consensus 339 ~~~~~~~~l~~~ele~G~~YelviTt~---~GLyR--------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l 401 (528)
T PF03321_consen 339 NPSEQPKTLLLHELEVGEEYELVITTN---SGLYR--------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL 401 (528)
T ss_dssp -----SSSEEGGG--TT-EEEEEEEST---TS-SS--------------EEECEEEEEEEEETTEEEEEEEEETTEEE-S
T ss_pred cccCCCceecHHHhcCCCeEEEEEecc---cceee--------------eecCCEEEEeeccCCCcEEEEeccCCceeec
Confidence 2356788889999864 12222 99999999953 34 79999999999999
Q ss_pred cceecChHHHHHHHhcC-----CCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcc
Q 037622 463 NGYQISPADLETVLICH-----PEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRV 524 (560)
Q Consensus 463 ~G~~v~~~~IE~~l~~~-----~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l 524 (560)
.|++++-.+|++++.+. -.+.+..+...........-+.++..... ..+.+++.+.+.+.|
T Consensus 402 ~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~-~~~~~~~~~~lD~~L 467 (528)
T PF03321_consen 402 FGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE-PDDLEELAKALDESL 467 (528)
T ss_dssp SS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS--HHHHHHHHHHHHHCS
T ss_pred ceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC-chHHHHHHHHHHHHh
Confidence 99999999999998764 23456666554221222233444444433 223455666665555
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.8e-06 Score=85.86 Aligned_cols=134 Identities=14% Similarity=0.002 Sum_probs=85.3
Q ss_pred CCCc---cceeecccCCCCHHHHHHHHHhCCCCe-eecccchhhcccccccCCCCCCCCcccccccc--cCCeEEEEEeC
Q 037622 321 SLKS---LKQVSSGAAPANSKIIEDFVGAFPHVD-FIQGYGMTESTAVGTRGFNTKKFSKYFSVGLL--APNIQAKVVDW 394 (560)
Q Consensus 321 ~l~~---lr~~~~~g~~~~~~~~~~~~~~~~~~~-i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~--~p~~~~~v~d~ 394 (560)
-+++ +..+..||-. ..+..++..+++.+ +...|++||+-...-..+. ..+...+.. ..++-.+.++.
T Consensus 300 lWPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~----~~p~~~~~~l~~~~~ffEFiP~ 372 (597)
T PLN02249 300 IWPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNPM----CKPSEVSYTIMPNMAYFEFLPH 372 (597)
T ss_pred hCCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCCC----CCCCCcceEecCCcEEEEeeec
Confidence 3466 5556666633 66677877776654 6778999995432211100 011111111 22555666642
Q ss_pred CC-------------CccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccC----CcEEEEcccc
Q 037622 395 VN-------------GCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDED----GYLYIVDRLK 457 (560)
Q Consensus 395 ~~-------------~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~----g~l~~~GR~~ 457 (560)
++ -..|..|+.-+|+|+.. .|.| .|+.||++++..- -.+.|+||.+
T Consensus 373 ~~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT~---~GLy--------------RY~iGDvVrvtgf~~~~P~i~F~gR~~ 435 (597)
T PLN02249 373 NHDGDGALDETSLVELADVEVGKEYELVITTY---AGLY--------------RYRVGDILRVTGFHNSAPQFKFIRRKN 435 (597)
T ss_pred ccCCcccCCCCcEecHHHcCCCCeEEEEEEcc---ccee--------------EeecCCEEEEeeccCCCcEEEEEccCC
Confidence 11 12346777888888753 1222 2899999999642 4799999999
Q ss_pred ceeeecceecChHHHHHHHhc
Q 037622 458 EVIKYNGYQISPADLETVLIC 478 (560)
Q Consensus 458 d~i~~~G~~v~~~~IE~~l~~ 478 (560)
.++.+.|++++-.+++.++.+
T Consensus 436 ~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 436 VLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred cceecccccCCHHHHHHHHHH
Confidence 999999999999999998876
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.2e-05 Score=79.28 Aligned_cols=139 Identities=13% Similarity=0.003 Sum_probs=88.9
Q ss_pred CCCccceeecccCCCCHHHHHHHHHhCCCCeeec-ccchhhcccccccCCCCCCCCcccccccccCCeE-EEEEeCCCC-
Q 037622 321 SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ-GYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQ-AKVVDWVNG- 397 (560)
Q Consensus 321 ~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~-~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~-~~v~d~~~~- 397 (560)
-+++++.+.+....-.......++..++++++.. .||+||+-..+=..+.. .........+|+.. ++.++.+++
T Consensus 291 LWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~---~p~~~sy~L~p~~~yFEFip~~~~~ 367 (606)
T PLN02247 291 LWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLS---DPSDVSYTLLPNMAYFEFLPVDKNN 367 (606)
T ss_pred hCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCC---CccCCceeecCCcEEEEEeecCCCc
Confidence 3577777666444455666778887777877655 89999955432111110 01112223345533 355532221
Q ss_pred ----------------------------ccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEc----
Q 037622 398 ----------------------------CFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFD---- 445 (560)
Q Consensus 398 ----------------------------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~---- 445 (560)
..+..|+.-||+|+.- .|.+ .||.||+.++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt~---~GLY--------------RYrlGDvv~V~GF~n 430 (606)
T PLN02247 368 GEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTF---TGLY--------------RYRVGDILMVTGFYN 430 (606)
T ss_pred ccccccccccccccccccccccCceecHHHccCCCeEEEEEEec---CceE--------------EEecCCEEEEeeecC
Confidence 1346777888888753 1111 28999999985
Q ss_pred cCCcEEEEccccceeeecceecChHHHHHHHhcC
Q 037622 446 EDGYLYIVDRLKEVIKYNGYQISPADLETVLICH 479 (560)
Q Consensus 446 ~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~ 479 (560)
.--.+.|++|.+.+..+.|+|.+-.++..++.+.
T Consensus 431 ~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a 464 (606)
T PLN02247 431 NAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA 464 (606)
T ss_pred CCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence 3357999999999999999999999998888653
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00013 Score=75.57 Aligned_cols=138 Identities=12% Similarity=0.004 Sum_probs=87.2
Q ss_pred CCCccceeecccCCCCHHHHHHHHHhCCCCeee-cccchhhcccccccCCCCCCCCccc-ccccccCCeE-EEEEeCCC-
Q 037622 321 SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFI-QGYGMTESTAVGTRGFNTKKFSKYF-SVGLLAPNIQ-AKVVDWVN- 396 (560)
Q Consensus 321 ~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~-~~G~~~p~~~-~~v~d~~~- 396 (560)
-+++++.+.+....-.......++..++++++. ..|++||+-..+=..+. .++. .....+|+.. ++.++.+.
T Consensus 302 LWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~----~~p~~~sy~L~p~~~yFEFip~~~~ 377 (612)
T PLN02620 302 LWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPL----CKPSEVSYTLIPTMAYFEFLPVHRN 377 (612)
T ss_pred hCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCC----CCcccceeeecCCcEEEEEeeccCc
Confidence 357777666554445566667777777777754 57999995543211111 0111 1223345533 34443111
Q ss_pred ------------------C-----ccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEcc----CCc
Q 037622 397 ------------------G-----CFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDE----DGY 449 (560)
Q Consensus 397 ------------------~-----~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~ 449 (560)
+ ..+..|+.-||+|+.- .|.+ .||.||+.++.. .-.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~---~GLy--------------RYrlGDvv~V~Gf~n~~P~ 440 (612)
T PLN02620 378 NGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTY---AGLY--------------RYRVGDVLRVAGFKNKAPQ 440 (612)
T ss_pred ccccccccccccccccccCccccHHHccCCCeEEEEEEec---CceE--------------EEecCCEEEEeeecCCCce
Confidence 1 1256788888988753 1212 289999999853 357
Q ss_pred EEEEccccceeeecceecChHHHHHHHhcC
Q 037622 450 LYIVDRLKEVIKYNGYQISPADLETVLICH 479 (560)
Q Consensus 450 l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~ 479 (560)
+.|++|.+.+..+.|+|.+-.++..++.+.
T Consensus 441 ~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a 470 (612)
T PLN02620 441 FSFICRKNVVLSIDSDKTDEVELQNAVKNA 470 (612)
T ss_pred EEEEeecCceeecccccCCHHHHHHHHHHH
Confidence 999999999999999999999998887643
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00045 Score=54.08 Aligned_cols=81 Identities=22% Similarity=0.309 Sum_probs=48.3
Q ss_pred ceecChHHHHHHHhcCCCcc-cEEEEcccCCCCCceEEEEEEecCCCCC---C----HHHHHHHHHhccCCCCCcceEEE
Q 037622 464 GYQISPADLETVLICHPEIL-DVAVTGAMDKVLGEIPVAFVVRRDGSTL---T----EAAVIDYLAQRVAPYKKVRRVVF 535 (560)
Q Consensus 464 G~~v~~~~IE~~l~~~~~v~-~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~----~~~l~~~~~~~l~~~~~p~~i~~ 535 (560)
|.+|+|.+||++|.++|++. ++.++....+ ..+.+.+.|...++... . .+++.+.+++.|.- .| .+.+
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~-~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv--~~-~V~l 76 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREG-GLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGV--RP-EVEL 76 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEET-TEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS---E-EEEE
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCC-CCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCc--eE-EEEE
Confidence 78999999999999999998 6666544443 34566666666665322 1 24555556666533 23 3555
Q ss_pred e--cCCCCCCCCcchH
Q 037622 536 T--KSIPKSAAGKVLR 549 (560)
Q Consensus 536 ~--~~lP~t~~GKi~r 549 (560)
+ ..||++ .||..|
T Consensus 77 v~~gtLpr~-~~K~~R 91 (96)
T PF14535_consen 77 VPPGTLPRS-EGKAKR 91 (96)
T ss_dssp E-TT-S----SSSS-S
T ss_pred ECCCCccCC-CCcceE
Confidence 5 579998 678655
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.74 Score=46.24 Aligned_cols=86 Identities=15% Similarity=0.054 Sum_probs=70.5
Q ss_pred eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCC--ChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceE
Q 037622 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNS--IYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKIS 144 (560)
Q Consensus 67 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~ 144 (560)
-+|+.|....+..+|+.|.. .|..+||+|.++..-+ ..-+.+.+|+.++|+.++|+.+... +.-..+++..++ .
T Consensus 109 ~~t~~D~~~wa~~~aR~~~~-~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~-~~~~~l~~df~~--t 184 (438)
T COG1541 109 GYTAKDIERWAELLARSLYS-AGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNT-ERQLELMKDFKP--T 184 (438)
T ss_pred ecCHHHHHHHHHHHHHHHHH-ccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccH-HHHHHHHHhcCC--c
Confidence 59999999999999999999 7999999998877622 1226788999999999999998433 455678899999 9
Q ss_pred EEEeeccchHHh
Q 037622 145 LAFTIYENVDKL 156 (560)
Q Consensus 145 ~v~~~~~~~~~~ 156 (560)
++.+.++..-.+
T Consensus 185 vI~~tps~~l~l 196 (438)
T COG1541 185 VIAATPSYLLYL 196 (438)
T ss_pred EEEEChHHHHHH
Confidence 998888765444
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=81.12 E-value=13 Score=38.41 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=58.7
Q ss_pred eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCCh--HHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceE
Q 037622 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIY--FPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKIS 144 (560)
Q Consensus 67 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~ 144 (560)
-+|..++...+...+..+.. .|+.+||++.++.+.+.. .....+++...|+.+++... ......+++..++ .
T Consensus 105 ~~T~~dl~~~~~~~~r~~~~-~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~--t 178 (445)
T TIGR03335 105 FLTWDDWKRYAEKYARSFVS-QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRP--T 178 (445)
T ss_pred eecHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCC--C
Confidence 57999999998888888877 799999999998876543 23456788899998887653 2334567788888 6
Q ss_pred EEEeecc
Q 037622 145 LAFTIYE 151 (560)
Q Consensus 145 ~v~~~~~ 151 (560)
.++....
T Consensus 179 ~l~~~ps 185 (445)
T TIGR03335 179 GIVASVF 185 (445)
T ss_pred EEEECHH
Confidence 6655443
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 560 | ||||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 3e-86 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 5e-86 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 5e-62 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 2e-60 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 2e-60 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 3e-60 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 6e-60 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-59 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-59 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-59 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 2e-44 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 5e-42 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 3e-39 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 7e-39 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 3e-37 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 8e-37 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 3e-35 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 3e-33 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 2e-32 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 5e-32 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 9e-31 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 3e-29 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 1e-28 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 6e-28 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 1e-26 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 1e-26 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 4e-26 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 6e-26 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 2e-25 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 3e-25 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 4e-25 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 5e-25 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 7e-25 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 3e-24 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 2e-23 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 4e-23 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 1e-15 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 2e-15 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 5e-15 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 6e-15 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 6e-15 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 1e-14 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 2e-14 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 3e-14 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 3e-12 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 8e-12 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 6e-11 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 7e-11 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 1e-10 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 5e-09 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 5e-09 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 2e-08 | ||
| 4dg8_A | 620 | Structure Of Pa1221, An Nrps Protein Containing Ade | 7e-08 | ||
| 3e7w_A | 511 | Crystal Structure Of Dlta: Implications For The Rea | 2e-07 | ||
| 3t5a_A | 480 | Crystal Structure Of N-Terminal Domain Of Faal28 G3 | 4e-04 |
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing Adenylation And Pcp Domains Length = 620 | Back alignment and structure |
|
| >pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 | Back alignment and structure |
|
| >pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w Mutant From Mycobacterium Tuberculosis Length = 480 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 560 | |||
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 0.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 0.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 0.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 0.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 0.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 1e-154 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 1e-151 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 1e-148 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 1e-146 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 1e-144 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 1e-139 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 1e-138 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 1e-136 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 1e-136 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 1e-135 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 2e-92 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 2e-87 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 1e-80 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 2e-64 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 5e-63 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 1e-48 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 6e-24 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 7e-23 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 1e-21 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 6e-21 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 8e-21 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 1e-20 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 2e-20 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 6e-20 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 9e-20 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 1e-16 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 1e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-07 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 2e-06 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 2e-05 |
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 655 bits (1693), Expect = 0.0
Identities = 203/538 (37%), Positives = 298/538 (55%), Gaps = 16/538 (2%)
Query: 22 ETGIYHSKHPSVNLPANDSLLDVDSFIFS--HKHNGRTALVDSLSGYSISYPQLFPLVQS 79
E I+ SK P + +P N L + S++ H+ + L++ +G +Y + +
Sbjct: 5 EEFIFRSKLPDIYIPKN---LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARR 61
Query: 80 VASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLC 139
VASGL GI QGD ++L LP+S F + FL + GAI+ NP + +E+ K
Sbjct: 62 VASGLNKI-GIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKAS 120
Query: 140 KTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVI 199
+ K+ T +K++ V V+ +G F +L + + I
Sbjct: 121 RAKL--LITQACYYEKVKD--FARESDVKVMCVDSAPDGCLH-FSELTQADENEAPQVDI 175
Query: 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFH 259
D A+ YSSGTTG KG LTH I +V V + Y SE V L VLPMFH
Sbjct: 176 SPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNL-YFHSEDVILCVLPMFH 234
Query: 260 IYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCG 319
IY L+ L L +G +++M +FE +L +I+KY V+ PVVPP++M++ K+ L
Sbjct: 235 IYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD-LDK 293
Query: 320 NSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKF---SK 376
+ L SL+ + SG AP ++ + FP QGYGMTE+ V K K
Sbjct: 294 HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIK 353
Query: 377 YFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWL 436
+ G + N + K+VD G LP GE+ +RG MK Y+N+ +AT TIDKEGWL
Sbjct: 354 PGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWL 413
Query: 437 HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLG 496
HTGDI Y D+D L+IVDRLKE+IKY G+Q++PA+LE +LI HPEI D AV G D+ G
Sbjct: 414 HTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAG 473
Query: 497 EIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
E+PVAFVV+ + S TE + Y++++V YK+++RV F ++IPK+ +GK+LR+ L++
Sbjct: 474 EVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKE 531
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 670 bits (1732), Expect = 0.0
Identities = 201/557 (36%), Positives = 308/557 (55%), Gaps = 18/557 (3%)
Query: 9 SSERINTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFS--HKHNGRTALVDSLSGY 66
S+ + + I+ SK P + +P + L + +IF + + L++ +G+
Sbjct: 31 VSQVMEKQSNNNNSDVIFRSKLPDIYIPNH---LSLHDYIFQNISEFATKPCLINGPTGH 87
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPL 126
+Y + + + +A+ H G++Q D V+LLLPN F + FLA + GA NP
Sbjct: 88 VYTYSDVHVISRQIAANF-HKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPF 146
Query: 127 LSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTT---PVVAVPENLVNDFKEG--RFS 181
+ +EI KQ TK+ T VDK++ +V + +N EG RF+
Sbjct: 147 FTPAEIAKQAKASNTKL--IITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFT 204
Query: 182 DFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQ 241
+ + ++++ I D A+ YSSGTTG KG LTH + +V V E
Sbjct: 205 ELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPN 264
Query: 242 YEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFP 301
Y S+ V L VLPMFHIY L+ L L +G ++++M +FE + +L++I + VT P
Sbjct: 265 L-YFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAP 323
Query: 302 VVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTES 361
+VPPI++A+ K+++ L S++ V SGAAP ++ + FP+ QGYGMTE+
Sbjct: 324 MVPPIVLAIAKSSE-TEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEA 382
Query: 362 TAVGTRGFNTKK---FSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKE 418
V K K + G + N + K+VD G L GE+ +RG MK
Sbjct: 383 GPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKG 442
Query: 419 YINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLIC 478
Y+NN AT TIDK+GWLHTGDI D+D L+IVDRLKE+IKY G+Q++PA+LE +LI
Sbjct: 443 YLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIG 502
Query: 479 HPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKS 538
HP+I DVAV ++ GE+PVAFVV+ S L+E V +++++V YK++ +V FT+S
Sbjct: 503 HPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTES 562
Query: 539 IPKSAAGKVLRRELRKF 555
IPK+ +GK+LR++LR
Sbjct: 563 IPKAPSGKILRKDLRAK 579
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 614 bits (1586), Expect = 0.0
Identities = 166/556 (29%), Positives = 264/556 (47%), Gaps = 27/556 (4%)
Query: 20 SPETGIYHSKHPSVNLPANDSLLD-VDSFIFSHKHNGRTALVDSLSGYSISYPQLFPLVQ 78
+ I P + S + ++ + G A ++++G SY +
Sbjct: 5 ENDENIVVGPKPFYPIE-EGSAGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSC 63
Query: 79 SVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTL 138
+ L+++ G+ + L N F + +A L++G V P N + ++ E+ + +
Sbjct: 64 CLGKALQNY-GLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGI 122
Query: 139 CKTKISLAFTIYENVDKLRSWGTTPVVAVPENLV---NDFKEGRFSDFHKLIAGK----- 190
K I F+ + +DK+ + V + +V + + I
Sbjct: 123 SKPTI--VFSSKKGLDKVIT--VQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGF 178
Query: 191 --FDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSE 248
V R++ A I+ SSG+TG KG +LTH N + +S
Sbjct: 179 QASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG--NQVSPG 236
Query: 249 AVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILM 308
L V+P H +G+ LG L G VV++ +F+ LK + Y T +VP +
Sbjct: 237 TAVLTVVPFHHGFGMFTT-LGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFA 295
Query: 309 ALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRG 368
L K+ + L L +L +++SG AP + ++ E F QGYG+TE+T+
Sbjct: 296 ILNKS-ELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAII-- 352
Query: 369 FNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMS 428
+ K + G + P +AKV+D L P GE+ ++GP MK Y+NN +AT
Sbjct: 353 ITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKE 412
Query: 429 TIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVT 488
ID+EGWLHTGDI Y+DE+ + +IVDRLK +IKY GYQ+ PA+LE+VL+ HP I D V
Sbjct: 413 LIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472
Query: 489 GAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVR-RVVFTKSIPKSAAGKV 547
G D V GE+P A VV G +TE V+DY+A +V+ K++R V F +PK GK+
Sbjct: 473 GVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKI 532
Query: 548 LRRELR---KFLTSKL 560
R +R K +K+
Sbjct: 533 DGRAIREILKKPVAKM 548
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 613 bits (1584), Expect = 0.0
Identities = 162/555 (29%), Positives = 262/555 (47%), Gaps = 31/555 (5%)
Query: 22 ETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHN-----GRTALVDSLSGYSISYPQLFPL 76
I P L + G A D+ +I+Y + F +
Sbjct: 4 AKNIKKGPAPFYPLED----GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEM 59
Query: 77 VQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQV 136
+A ++ + G++ +++ NS+ F + L L++G V P N + + E+ +
Sbjct: 60 SVRLAEAMKRY-GLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSM 118
Query: 137 TLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLV---NDFKEGRFSDFHKLIAG---- 189
+ + + F + + K+ + + + + ++ + F + +
Sbjct: 119 NISQPTV--VFVSKKGLQKILN--VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPP 174
Query: 190 ---KFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLS 246
++D V R + A I+ SSG+TG KG L H + +
Sbjct: 175 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHAR--DPIFGNQII 232
Query: 247 SEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPI 306
+ L+V+P H +G+ LG L G VV+M RFE L+ + Y + +VP +
Sbjct: 233 PDTAILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTL 291
Query: 307 LMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGT 366
K+ + L +L +++SG AP + ++ E F QGYG+TE+T+
Sbjct: 292 FSFFAKSTL-IDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 350
Query: 367 RGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT 426
+ K +VG + P +AKVVD G L GEL +RGP M Y+NN +AT
Sbjct: 351 --ITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEAT 408
Query: 427 MSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVA 486
+ IDK+GWLH+GDIAY+DED + +IVDRLK +IKY GYQ++PA+LE++L+ HP I D
Sbjct: 409 NALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAG 468
Query: 487 VTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVR-RVVFTKSIPKSAAG 545
V G D GE+P A VV G T+TE ++DY+A +V KK+R VVF +PK G
Sbjct: 469 VAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTG 528
Query: 546 KVLRRELRKFLTSKL 560
K+ R++R+ L
Sbjct: 529 KLDARKIREILIKAK 543
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 541 bits (1395), Expect = 0.0
Identities = 152/552 (27%), Positives = 252/552 (45%), Gaps = 41/552 (7%)
Query: 25 IYHSKHPSVNLPANDSLLDVDSFIFSH--KHNGRTALVD------SLSGYSISYPQLFPL 76
Y PS+ P + + I + K +TA++ S S+++ ++ +
Sbjct: 6 KYKIGFPSLYYPK----ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEV 61
Query: 77 VQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQV 136
+ +ASG+ G+ +G+ V + +PNSI + + AL + A +P+NP+ E++ +
Sbjct: 62 TKKLASGISRK-GVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHIL 120
Query: 137 TLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVER 196
+ + + V V + S+ + +G D
Sbjct: 121 NDSEAT--TLVVHSMLYENFK--PVLEKTGVERVFVVGGEVNSLSEV--MDSGSEDFENV 174
Query: 197 PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLP 256
V ++D A I Y+ GTTG KG LTH N A + + LS + +P
Sbjct: 175 KVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANAL-----QLAVATGLSHMDTIVGCMP 229
Query: 257 MFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKG 316
MFH L L + G VVM F + + I+KY T VPP L L +
Sbjct: 230 MFHSAEFGLVNLMVTV-GNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLES 288
Query: 317 LCGN-SLKSLKQVSSGAAPANSKIIEDF------VGAFPHVDFIQGYGMTESTAVGTRGF 369
LK ++GA P ++E P + Q +GMTE+ + T
Sbjct: 289 SNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVT--T 346
Query: 370 N-TKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMS 428
N + K + G+ +I+ KV+ +G L G +GE+ +RGP K Y
Sbjct: 347 NPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQE 406
Query: 429 TI----DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILD 484
+ TGD+ + DE+G+L+ DR+KEVIKY GY I+P +LE +L+ H ++D
Sbjct: 407 CWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMD 466
Query: 485 VAVTGAMDKVLGEIPVAFVVRRDG--STLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKS 542
VAV G D+ GE+P AF+V + + E +I+++ +R++ YK+VR V F + +P++
Sbjct: 467 VAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRT 526
Query: 543 AAGKVLRRELRK 554
A+GK+LRR LR+
Sbjct: 527 ASGKLLRRLLRE 538
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 451 bits (1162), Expect = e-154
Identities = 128/506 (25%), Positives = 233/506 (46%), Gaps = 22/506 (4%)
Query: 50 SHKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVI 109
+ A+ + +G ISY +L VA+ L G+ GD V S+ V+
Sbjct: 12 KLDDPHKLAIETA-AGDKISYAELVARAGRVANVLVAR-GLQVGDRVAAQTEKSVEALVL 69
Query: 110 FLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAF-TIYENVDKLRSWGTTPVVAVP 168
+LA + G + +P+N ++ E+ +T + KI + + + + + + V +
Sbjct: 70 YLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLG 129
Query: 169 ENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFI 228
+ + AG + D AAILY+SGTTG SKGA L+H N
Sbjct: 130 PDGRGSLTD--------AAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLA 181
Query: 229 AAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEM 288
+ V Y + + V + LP++H +GL + + L S++ + +F+ ++
Sbjct: 182 SNSLTLV-----DYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKI 236
Query: 289 LKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP 348
L ++ + T VP L ++ L + ++ SG+AP + ++
Sbjct: 237 LDLMAR--ATVLMGVPTFYTRLLQSP-RLTKETTGHMRLFISGSAPLLADTHREWSAKT- 292
Query: 349 HVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGEL 408
++ YGMTE+ + ++ + +VG P + A+V D G LP G G +
Sbjct: 293 GHAVLERYGMTETNMNTSNPYDGDR--VPGAVGPALPGVSARVTDPETGKELPRGDIGMI 350
Query: 409 WLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQIS 468
++GP K Y + T S +G+ TGD+ DE GY++I+ R K+++ G+ +
Sbjct: 351 EVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVY 410
Query: 469 PADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYK 528
P ++E+ + P +++ AV G GE A VVR G+T+ EA V+ L ++A +K
Sbjct: 411 PKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFK 470
Query: 529 KVRRVVFTKSIPKSAAGKVLRRELRK 554
++V+F +P++ GKV + LR+
Sbjct: 471 MPKKVIFVDDLPRNTMGKVQKNVLRE 496
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 443 bits (1142), Expect = e-151
Identities = 138/502 (27%), Positives = 229/502 (45%), Gaps = 27/502 (5%)
Query: 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
A V+ + ++Y Q+ L A L GI++GD V LL+PNS+ F +F
Sbjct: 32 LQAYVEPSTDVRMTYAQMNALANRCADVLTAL-GIAKGDRVALLMPNSVEFCCLFYGAAK 90
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIY-ENVDKLRSWGTTPVVAVPENLVND 174
LGA+ +P+N L+ E+ ++ +K+ + +D +R+ P
Sbjct: 91 LGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDW----- 145
Query: 175 FKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELF 234
+ + D I+Y+SGTTG KG TH + +A
Sbjct: 146 ---IGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAA--- 199
Query: 235 VRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDK 294
+ + L LPMFH+ L+ + G +++ M +F+A+++ +I +
Sbjct: 200 --SSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVE 256
Query: 295 YGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354
V VP IL + + + +G AP +I+ + A +++ +Q
Sbjct: 257 ERVCIGGAVPAILNFMRQVP-EFAELDAPDFRYFITGGAPMPEALIKIY--AAKNIEVVQ 313
Query: 355 GYGMTESTAVGTRGFNTKKF--SKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG 412
GY +TES GT + K S G V +G G GE+ ++
Sbjct: 314 GYALTESCGGGT--LLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKS 369
Query: 413 PGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADL 472
+KEY N +AT D GW TGDI D++GYLYI DRLK++I G + PA++
Sbjct: 370 DILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEI 428
Query: 473 ETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRR 532
E+V+I P + +VAV G D+ GEI A VV ++E +++Y R+A YK ++
Sbjct: 429 ESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQN-EVSEQQIVEYCGTRLARYKLPKK 487
Query: 533 VVFTKSIPKSAAGKVLRRELRK 554
V+F ++IP++ GK+L+ LR+
Sbjct: 488 VIFAEAIPRNPTGKILKTVLRE 509
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 435 bits (1122), Expect = e-148
Identities = 145/503 (28%), Positives = 225/503 (44%), Gaps = 29/503 (5%)
Query: 55 GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114
RTA + G +++ + +ASGL G+ GD V +L N + A+
Sbjct: 21 DRTAFMVD--GVRLTHRDYLARAERLASGLLRD-GVHTGDRVAILSQNCSEMIELIGAVA 77
Query: 115 YLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIY-ENVDKLRSWGTTPVVAVPENLVN 173
+GAI++P+N L+ EI + + +A T Y + V + + V +
Sbjct: 78 LIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP----SLGGVKKAYAI 133
Query: 174 DFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVEL 233
G F+ F L + P D I++++ G +GA ++ GN + A
Sbjct: 134 GDGSGPFAPFKDLASD--TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQ-- 189
Query: 234 FVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVID 293
L+ V L +LP+FH+ GL L L L G + V+ +F+ ++ + I+
Sbjct: 190 ---SSLVDAWRLTEADVNLGMLPLFHVTGLGLM-LTLQQAGGASVIAAKFDPAQAARDIE 245
Query: 294 KYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFI 353
+ VT P+L + A L SL+ V+ P IE F P+ F
Sbjct: 246 AHKVTVMAEFAPMLGNILDQAAP---AQLASLRAVTGLDTPE---TIERFEATCPNATFW 299
Query: 354 QGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP 413
+G +E++ + T F + + S G VVD LPPG GE+ LRGP
Sbjct: 300 ATFGQSETSGLST--FAPYR-DRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGP 355
Query: 414 GTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRL--KEVIKYNGYQISPAD 471
K Y NNA AT + GW HTGD+ FD DGYL+ R KE+IK G + PA+
Sbjct: 356 TVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAE 414
Query: 472 LETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVR 531
+E L HP I D V G D E A V + G ++ A+ +++A +A YKK +
Sbjct: 415 VEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPK 474
Query: 532 RVVFTKSIPKSAAGKVLRRELRK 554
VVF +++PK A G + R ++
Sbjct: 475 HVVFVEALPKDAKGAIDRAAVKT 497
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 431 bits (1110), Expect = e-146
Identities = 124/508 (24%), Positives = 218/508 (42%), Gaps = 26/508 (5%)
Query: 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
AL G +++ +L V++VA+ L G+ V ++ PNS + LAL
Sbjct: 18 HCALAVPARGLRLTHAELRARVEAVAARLHAD-GLRPQQRVAVVAPNSADVVIAILALHR 76
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDF 175
LGA+ +NP L +E+ + + + ++ + D + G+ + +LV D
Sbjct: 77 LGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDG 136
Query: 176 KEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFV 235
+ + +E P A I Y+SGTTG K A + + V
Sbjct: 137 EPYSYGP----------PIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186
Query: 236 RFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKY 295
++ V L ++P++H+ G + L+L + VV+ F + L+++ +
Sbjct: 187 TQVGLRH---GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQE 243
Query: 296 GVTHFPVVPPILMALTKAAKGLCGNS-LKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354
VT P L AL AA + L SL+ V+ A ++E P + +
Sbjct: 244 QVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-GEKVN 302
Query: 355 GYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCF--LPPGSTGELWLRG 412
YG TE+ K + + ++V G + G GEL +
Sbjct: 303 IYGTTEAMNSLY--MRQPKTG---TEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 413 PGT-MKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPAD 471
+ Y+N AT + +GW T D+A + +G + I+ R+ ++I G I P++
Sbjct: 358 SDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE 416
Query: 472 LETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL-AQRVAPYKKV 530
+E VL P + +V V G D+ G+ A VV R G TL+ A+ + + +A +K+
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRP 476
Query: 531 RRVVFTKSIPKSAAGKVLRRELRKFLTS 558
+R +PK+A KVLRR+L + ++S
Sbjct: 477 KRYFILDQLPKNALNKVLRRQLVQQVSS 504
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 424 bits (1092), Expect = e-144
Identities = 116/505 (22%), Positives = 213/505 (42%), Gaps = 34/505 (6%)
Query: 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
A+ D S +Y L+ +A L Q V L + NSI ++ A
Sbjct: 17 HIAITDG--QESYTYQNLYCEASLLAKRL----KAYQQSRVGLYIDNSIQSIILIHACWL 70
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKI-----SLAFTIYENVDKLRSWGTTPVVAVPEN 170
+ +N L+ +E+ Q+ ++ L ++ V +
Sbjct: 71 ANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGL 130
Query: 171 LVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQ-DTAAILYSSGTTGASKGAELTHGNFIA 229
L N + ++ + D A+I+++SGTTG K T N A
Sbjct: 131 LDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYA 190
Query: 230 AVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEML 289
+ + + +L+VLP++HI GLS+ ++ G +V ++ +F A ++L
Sbjct: 191 SA-----IGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVI-EGFTVRIVDKFNAEQIL 244
Query: 290 KVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPH 349
+I +TH +VP L L + + +L+++ G A ++ +IE +
Sbjct: 245 TMIKNERITHISLVPQTLNWLMQQG----LHEPYNLQKILLGGAKLSATMIETALQYN-- 298
Query: 350 VDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELW 409
+ +GMTE+ + ++ +VG+ + N+ K+ + GEL
Sbjct: 299 LPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKN------PNKEGHGELM 352
Query: 410 LRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISP 469
++G M Y+ D T + + G+ +TGDIA D +GY+ I DR K++I G I P
Sbjct: 353 IKGANVMNGYLYPTDLTGTFEN--GYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYP 410
Query: 470 ADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKK 529
+ETV P I D G D G++P + V +++A +I YL++ +A YK
Sbjct: 411 YQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD--ISKAQLIAYLSKHLAKYKV 468
Query: 530 VRRVVFTKSIPKSAAGKVLRRELRK 554
+ ++P ++ GK+ R +L +
Sbjct: 469 PKHFEKVDTLPYTSTGKLQRNKLYR 493
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 413 bits (1065), Expect = e-139
Identities = 125/508 (24%), Positives = 221/508 (43%), Gaps = 19/508 (3%)
Query: 52 KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
G+TA +D S +Y +L + AS LR G+ + +LL++ +++ PV FL
Sbjct: 35 TRAGKTAYIDD--TGSTTYGELEERARRFASALRTL-GVHPEERILLVMLDTVALPVAFL 91
Query: 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFT-IYENVDKLRSWGTTPVVAVPEN 170
LY G + + N LL+ ++ +T + +A + +NV + + +
Sbjct: 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVS 151
Query: 171 LVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAA 230
+ + F +LI + D A LYSSG+TG KG TH N
Sbjct: 152 QPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWT 211
Query: 231 VELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMR-RFEASEML 289
EL+ + ++ V + +F YGL LS+G + ++M R A +
Sbjct: 212 AELYAK----PILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIF 267
Query: 290 KVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPH 349
+ ++ T F VP + + + L + +++ +S +I E F F
Sbjct: 268 ARLVEHRPTVFYGVPTLYANMLVSP-NLPARADVAIRICTSAGEALPREIGERFTAHF-G 325
Query: 350 VDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELW 409
+ + G G TE + N +Y + G P + ++ D G +P G G+L+
Sbjct: 326 CEILDGIGSTEMLHIF--LSNRAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLY 382
Query: 410 LRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISP 469
++GP Y NN + + +T W+ +GD +G R +++K +G +SP
Sbjct: 383 IKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSP 441
Query: 470 ADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDG---STLTEAAVIDYLAQRVAP 526
++E VL+ H +L+ AV G AFVV + S + + ++ R+AP
Sbjct: 442 VEVEMVLVQHDAVLEAAVVGVDHGG-LVKTRAFVVLKREFAPSEILAEELKAFVKDRLAP 500
Query: 527 YKKVRRVVFTKSIPKSAAGKVLRRELRK 554
+K R +VF +PK+A GK+ R +LR+
Sbjct: 501 HKYPRDIVFVDDLPKTATGKIQRFKLRE 528
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 410 bits (1056), Expect = e-138
Identities = 134/538 (24%), Positives = 223/538 (41%), Gaps = 48/538 (8%)
Query: 26 YHSKHPSVNLPANDSLLD-VDSFIFSH--KHNGRTALVDSLSGYSISYPQLFPLVQSVAS 82
+H H S +P + + + R AL S++Y +L + A
Sbjct: 6 HHHHHSSGLVPRGSHMSSLFPALSPAPTGAPADRPALRFG--ERSLTYAELAAAAGATAG 63
Query: 83 GLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTK 142
+ V + ++ V +A L G +P+NP E+ ++
Sbjct: 64 RIGG------AGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPS 117
Query: 143 ISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQ 202
+ LA E L + V V
Sbjct: 118 LVLAPPDAELPPALGALERVDVDVRAR----------------------GAVPEDGADDG 155
Query: 203 DTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYG 262
D A ++Y+SGTTG KGA + ++ + E V + LP+FH++G
Sbjct: 156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ-----WTGEDVLVQGLPLFHVHG 210
Query: 263 LSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAK--GLCGN 320
L L LG L G SV + RF + ++ G T VP + + +
Sbjct: 211 LVLGILGPLRRGGSVRHLGRFSTEGAARELND-GATMLFGVPTMYHRIAETLPADPELAK 269
Query: 321 SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSV 380
+L + + SG+A E A I+ YGMTE+ + + +V
Sbjct: 270 ALAGARLLVSGSAALPVHDHERIAAATGRR-VIERYGMTETLMNTS--VRADGEPRAGTV 326
Query: 381 GLLAPNIQAKVVD--WVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHT 438
G+ P ++ ++V+ L S GE+ +RGP EY+N DAT + ++G+ T
Sbjct: 327 GVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRT 386
Query: 439 GDIAYFDEDGYLYIVDR-LKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGE 497
GD+A D DGY+ IV R ++IK GY+I ++E L+ HPE+ + AVTG D LGE
Sbjct: 387 GDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGE 446
Query: 498 IPVAFVVRRD-GSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
VA++V D + + D++A R+AP+K+ R V + ++P++ GK+++R L +
Sbjct: 447 RIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 405 bits (1044), Expect = e-136
Identities = 139/515 (26%), Positives = 229/515 (44%), Gaps = 24/515 (4%)
Query: 52 KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
K+ R A+ SY +L +A+G + GI Q D V++ LPN F +
Sbjct: 37 KYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKL-GIQQKDRVVVQLPNIKEFFEVIF 93
Query: 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-TPVVAVPEN 170
AL LGA+ + P SEI + + Y D + +N
Sbjct: 94 ALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKN 153
Query: 171 LVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAA 230
++ + F L + V+ P ++ D A + S G+TG SK TH ++I +
Sbjct: 154 IIVAGEAEEFLPLEDLHT---EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYS 210
Query: 231 VELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSL-FALGLLSLGPSVVVMRRFEASEML 289
+ + + +L V+LA LPM H Y LS LG+L G VV+ +
Sbjct: 211 L-----KRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAF 265
Query: 290 KVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPH 349
+I++ VT +VPP+ M AA + L SL+ + G A +++ F
Sbjct: 266 PLIEREKVTITALVPPLAMVWMDAA-SSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-G 323
Query: 350 VDFIQGYGMTESTAVGTR--GFNTKKFSKYFSVGL-LAPNIQAKVVDWVNGCFLPPGSTG 406
Q +GM E TR + + G ++P +++V D + + PG TG
Sbjct: 324 CTLQQVFGMAEGLVNYTRLDDPEEIIVN---TQGKPMSPYDESRVWD-DHDRDVKPGETG 379
Query: 407 ELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQ 466
L RGP T++ Y + ++ ++G+ TGDI DGY+ + R K+ I G +
Sbjct: 380 HLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEK 439
Query: 467 ISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQR-VA 525
++ ++E L+ HP + D A+ D+ LGE F++ RD A + +L +R +A
Sbjct: 440 VAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKAAELKAFLRERGLA 498
Query: 526 PYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560
YK RV F +S P++ GKV ++ LR+ ++ KL
Sbjct: 499 AYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 405 bits (1043), Expect = e-136
Identities = 119/513 (23%), Positives = 216/513 (42%), Gaps = 16/513 (3%)
Query: 52 KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
H A++ +SY +L L ++A+ L G+ +GD L+ LPN F ++F
Sbjct: 42 SHPHSLAIICG--ERQLSYIELDRLSTNLATRLAEK-GLGKGDTALVQLPNVAEFYIVFF 98
Query: 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-TPVVAVPEN 170
ALL G +V+ E+ + + K+ + +E + + V PE
Sbjct: 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEI 158
Query: 171 LVNDFKEGRFSDFHKLIAGKFDLVERPVIRQ-QDTAAILYSSGTTGASKGAELTHGNFIA 229
++ + I + + A S G+TG K TH ++
Sbjct: 159 ILMLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDY 218
Query: 230 AVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSL-FALGLLSLGPSVVVMRRFEASEM 288
+V +++ L+S L LP H + LS ALG+L G VV+ E
Sbjct: 219 SV-----RASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNC 273
Query: 289 LKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP 348
+I ++ V +VP ++ + A + ++SLK + G A +
Sbjct: 274 FSIIQRHQVNMASLVPSAVIMWLEKA-AQYKDQIQSLKLLQVGGASFPESLARQVPEVL- 331
Query: 349 HVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGL-LAPNIQAKVVDWVNGCFLPPGSTGE 407
+ Q +GM E TR + + + G ++ + + K+VD +P G G
Sbjct: 332 NCKLQQVFGMAEGLVNYTR-LDDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGM 389
Query: 408 LWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQI 467
L RGP T Y + + D++ + ++GD+ DG L +V R+K+ I G +I
Sbjct: 390 LATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKI 449
Query: 468 SPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPY 527
+ ++E +++ HPE++ A+ +D+ GE AF+V R+ + +A Y
Sbjct: 450 ASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGIAQY 509
Query: 528 KKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560
K ++ +S+P +A GKV +++LR L +
Sbjct: 510 KLPDQIKLIESLPLTAVGKVDKKQLRSILNTST 542
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 406 bits (1045), Expect = e-135
Identities = 122/510 (23%), Positives = 212/510 (41%), Gaps = 19/510 (3%)
Query: 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
A++D +SY +L ++A LR GI G+ L+ L N + F ALL
Sbjct: 41 SIAVIDG--ERQLSYRELNQAADNLACSLRRQ-GIKPGETALVQLGNVAELYITFFALLK 97
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-TPVVAVPENLVND 174
LG + SE+ + + + +A + T + +
Sbjct: 98 LGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLL 157
Query: 175 FKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELF 234
G + I + + A S GTTG K TH ++ +V
Sbjct: 158 NDSGEHN-LQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSV--- 213
Query: 235 VRFEASQYEYLSSEAVFLAVLPMFHIYGL-SLFALGLLSLGPSVVVMRRFEASEMLKVID 293
+ + + + +L +P H Y + S +LG+ G +VV+ A+ +I+
Sbjct: 214 --RRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIE 271
Query: 294 KYGVTHFPVVPPILMALTKAAK-GLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDF 352
K+ V +VPP + +A G L SLK + G A ++ +
Sbjct: 272 KHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQL 330
Query: 353 IQGYGMTESTAVGTRGFNTKKFSKYFSVGL-LAPNIQAKVVDWVNGCFLPPGSTGELWLR 411
Q +GM E TR + + G + P+ + V D G LP G G L R
Sbjct: 331 QQVFGMAEGLVNYTR-LDDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTR 388
Query: 412 GPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPAD 471
GP T + Y + S D G+ +GD+ D +GY+ + R K+ I G +I+ +
Sbjct: 389 GPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEE 448
Query: 472 LETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQR-VAPYKKV 530
+E +L+ HP ++ A+ D+++GE A++V ++ L V +L ++ +A +K
Sbjct: 449 IENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEP--LRAVQVRRFLREQGIAEFKLP 506
Query: 531 RRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560
RV S+P +A GKV +++LR++L S+
Sbjct: 507 DRVECVDSLPLTAVGKVDKKQLRQWLASRA 536
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 293 bits (753), Expect = 2e-92
Identities = 114/520 (21%), Positives = 217/520 (41%), Gaps = 33/520 (6%)
Query: 52 KHNGRTALV---DSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPV 108
K AL ++ +L Q A+ L G+ +GD V ++LP + +
Sbjct: 55 KRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWL 114
Query: 109 IFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSW-GTTPVVAV 167
+ L + G I +P + ++I ++ + K K E + ++ + P + +
Sbjct: 115 VILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAK--AIVAGDEVIQEVDTVASECPSLRI 172
Query: 168 PENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNF 227
LV++ + +F KL+ Q+ +AI ++SGT+G K AE ++ +
Sbjct: 173 KL-LVSEKSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSL 231
Query: 228 IAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV--MRRFEA 285
++ + + L + + + I + + +LG V + +F+
Sbjct: 232 GLKAKM-----DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDP 286
Query: 286 SEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVG 345
+LK + Y + P + L + L L+ + + +E++
Sbjct: 287 LVILKTLSSYPIKSMMGAPIVYRMLLQQ--DLSSYKFPHLQNCVTVGESLLPETLENWRA 344
Query: 346 AFPHVDFIQGYGMTESTAVGTRGFNTKKFS-KYFSVGLLAPNIQAKVVDWVNGCFLPPGS 404
+D + YG TE+ +K K +G A +++D G LPPG+
Sbjct: 345 QT-GLDIRESYGQTETGLTCM---VSKTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGT 399
Query: 405 TGEL-----WLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEV 459
G++ +R G Y++N D T + I + + GD DEDGY + R ++
Sbjct: 400 EGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDI 458
Query: 460 IKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDG-----STLTEA 514
I +GY+I P+++E L+ HP +++ AV + D V GE+ AFVV
Sbjct: 459 INSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTK 518
Query: 515 AVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
+ ++ APYK R++ F ++PK+ GK+ R +LR
Sbjct: 519 ELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRD 558
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 279 bits (717), Expect = 2e-87
Identities = 140/512 (27%), Positives = 233/512 (45%), Gaps = 54/512 (10%)
Query: 69 SYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLS 128
+Y +++ + + GLR G+ GD V L N + A+ +GA++ NP LS
Sbjct: 49 TYAEVYQRARRLMGGLRAL-GVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLS 107
Query: 129 VSEIKKQVTLCKTKI--------SLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRF 180
EI + + K+ L I + ++ + VV +
Sbjct: 108 PKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHF----VVMDEKAPEGYL----- 158
Query: 181 SDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTH-GNFIAAVELFVRFEA 239
+ + + + D V P ++ + Y++GTTG KG +H + ++ +
Sbjct: 159 -AYEEALGEEADPVRVP---ERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT 214
Query: 240 SQYEYLSSEAVFLAVLPMFHIYG----LSLFALGLLSLGPSVVVMRRFEASEMLKVIDKY 295
+ LS + V L V+PMFH+ + +G V+ R + + ++++ D
Sbjct: 215 A----LSEKDVVLPVVPMFHVNAWCLPYAATLVG----AKQVLPGPRLDPASLVELFDGE 266
Query: 296 GVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDF--VGAFPHVDFI 353
GVT VP + +AL + G+ LK+L+++ G + A +I F +G V+
Sbjct: 267 GVTFTAGVPTVWLALADYLEST-GHRLKTLRRLVVGGSAAPRSLIARFERMG----VEVR 321
Query: 354 QGYGMTESTAVGTRGF---------NTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPP-G 403
QGYG+TE++ V + F +K + GL P ++ +V D G +P G
Sbjct: 322 QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDG 380
Query: 404 ST-GELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKY 462
GE+ L+GP Y N +AT S + +G+ TGDIA +DE+GY+ I DRLK++IK
Sbjct: 381 KALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKS 440
Query: 463 NGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQ 522
G IS DLE L+ HP++ + AV E P+A VV R E L
Sbjct: 441 GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKA 500
Query: 523 RVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
A ++ VF + IP+++AGK L+R LR+
Sbjct: 501 GFAKWQLPDAYVFAEEIPRTSAGKFLKRALRE 532
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 262 bits (673), Expect = 1e-80
Identities = 135/528 (25%), Positives = 223/528 (42%), Gaps = 51/528 (9%)
Query: 55 GRTALV---DSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
+ A++ D + ++ L A+ H GI +GD V+L L + F L
Sbjct: 71 EKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKH-GIGKGDYVMLTLKSRYDFWYCML 129
Query: 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKI---SLAFTIYENVDKLRSWGTTPVVAVP 168
L LGAI +P +L +I ++ K+ + E VD+ + + +
Sbjct: 130 GLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA--ECGDIPLK 187
Query: 169 ENLVNDFKEGRFSDFHKLIAGKFDLVERPVI----RQQDTAAILYSSGTTGASKGAELTH 224
+ V + DF K + + ERP + +D + +SSGT G K E +
Sbjct: 188 KAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDN 247
Query: 225 GNFIAAVELFVRFEASQYEY---LSSEAVFLAVL-P---MFHIYGLSLFALGLLSLGPSV 277
+ +Y + + + V L G G +V
Sbjct: 248 TYPLGH--------ILTAKYWQNVEDDGLHYTVADSGWGKCVWGKL----YGQWIAGCAV 295
Query: 278 VV--MRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPA 335
V RFEA ML+ KYGVT F P I L K L + +LK P
Sbjct: 296 FVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE--DLSHYNFSTLKYAVVAGEPL 353
Query: 336 NSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFS-KYFSVGLLAPNIQAKVVDW 394
N ++ F+ + ++G+G TE+ K S+G P + +++D
Sbjct: 354 NPEVFNRFLEFT-GIKLMEGFGQTETVVTIA---TFPWMEPKPGSIGKPTPGYKIELMD- 408
Query: 395 VNGCFLPPGSTGELWLRGP-----GTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGY 449
+G G GE+ + G Y + + T T +G+ HTGD+A+ DEDGY
Sbjct: 409 RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGY 467
Query: 450 LYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS 509
L+ V R ++IK +GY++ P ++E+ LI HP +L+ A+TG D V G++ A +V
Sbjct: 468 LWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDY 527
Query: 510 TLTEA---AVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
T +++ + D++ APYK R + F +PK+ +GK+ R E+R
Sbjct: 528 TPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRD 575
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 5e-63
Identities = 106/546 (19%), Positives = 196/546 (35%), Gaps = 80/546 (14%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNP- 125
+++Y QL +++A+ L+ G GD VLLL + FL LY G I +P+ P
Sbjct: 40 TMTYEQLDQHAKAIAATLQAE-GAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPP 98
Query: 126 --LLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDF 183
+ + ++ VT K + I +++ K + F +
Sbjct: 99 AQEKLLDKAQRIVTNSKP--VIVLMIADHIKKFTADELNTNP--------KFLKIPAIAL 148
Query: 184 HKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYE 243
+ + + I+ D A + Y+SG+T KG ++H N + +
Sbjct: 149 ESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT-----SF 203
Query: 244 YLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVM--RRFEASEM--LKVIDKYGVTH 299
+++ E + + LP H GL L + G ++M F + + LK I KY T
Sbjct: 204 HMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATI 263
Query: 300 FPVVPPILMAL------TKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAF------ 347
P + +GL L S +GA P + +E F AF
Sbjct: 264 -SGSPNFAYDYCVKRIREEKKEGL---DLSSWVTAFNGAEPVREETMEHFYQAFKEFGFR 319
Query: 348 PHVDFIQGYGMTEST-AVGTRGFNTKKFSKYFSVGLLA---------------------- 384
F YG+ E+T V + + +
Sbjct: 320 KEA-FYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGN 378
Query: 385 PNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI--------DKEGWL 436
P + K++D GE+W++ K Y N + T +L
Sbjct: 379 PIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYL 438
Query: 437 HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLE-TVLICHPEIL--DVAVTGAMDK 493
TGD+ + + LY+ R+K++I G P D+E +++ + A ++
Sbjct: 439 RTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEE 497
Query: 494 VLGEIPVAFVVRRDGS-TLTEAAVIDYLAQRVAP--YKKVRRVVFTK--SIPKSAAGKVL 548
++ V V+ + + + + + + V +V +V ++P + +GK+
Sbjct: 498 HEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIR 557
Query: 549 RRELRK 554
R RK
Sbjct: 558 RNFCRK 563
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 1e-48
Identities = 80/438 (18%), Positives = 144/438 (32%), Gaps = 64/438 (14%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPL 126
++++ QL+ +VA L S GD V++ P + + V FL L G I +P++
Sbjct: 58 TLTWSQLYRRTLNVAQELSRCG--STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVP 115
Query: 127 LSVSEIKKQVTLCK-TKISLAFTIYENVDKLRSW-GTTPVVAVPENLVNDFKEGRFSDFH 184
++ ++ + T VD + P + P + D + + +
Sbjct: 116 QGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDLDAPNGY 175
Query: 185 KLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVR-FEASQYE 243
TA + Y+SG+T G ++H N E + + A
Sbjct: 176 TF----------KEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDG 225
Query: 244 YLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVM--RRF--EASEMLKVIDKYGVTH 299
+ ++ LP +H GL + + G V+ F + + ++
Sbjct: 226 IPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAF 285
Query: 300 FPVVPPI---LMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAF------PHV 350
P L A + G L ++ + SG+ + I+ F F V
Sbjct: 286 -SAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERV 344
Query: 351 DFIQGYGMTEST-AVGTRGFNTKKFSKYFSVGLLAPNI---------------------Q 388
Y + E+T V T + F L+
Sbjct: 345 -IRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPI 403
Query: 389 AKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI-----------DKEGWLH 437
++VD P G+ GE+W+ G Y D + T + WL
Sbjct: 404 VRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLR 463
Query: 438 TGDIAYFDEDGYLYIVDR 455
TGD + DG ++I+ R
Sbjct: 464 TGDSGFVT-DGKMFIIGR 480
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 6e-24
Identities = 133/554 (24%), Positives = 222/554 (40%), Gaps = 109/554 (19%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI--VIPMN 124
ISY +L V A+ L GI +GD V + +P V LA +GA+ VI
Sbjct: 107 HISYRELHRDVCRFANTLLDL-GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG 165
Query: 125 PLLSVSEIKKQVTLCKTKISL----------AFTIYENVDK-LRSWGTTPV--VAVPENL 171
S + + +++ + + + +NVD L++ T V V V +
Sbjct: 166 --FSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRT 223
Query: 172 VND--FKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIA 229
+D ++EGR + LI + + +D ILY+SG+TG KG T G ++
Sbjct: 224 GSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLV 283
Query: 230 AVELFVRFEASQYEYLSSEAVFLAVLPMFH---IY----------GLSLFALGLLSLGPS 276
Y + + VF +H IY G S G L+ G +
Sbjct: 284 ------------YAATTFKYVF-----DYHPGDIYWCTADVGWVTGHSYLLYGPLACGAT 326
Query: 277 VVVMRRFE-------ASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLC-GNSLKSLKQV 328
++ FE + M +V+DK+ V P + AL G SL+ +
Sbjct: 327 TLM---FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRIL 383
Query: 329 SSGAAPANSKIIE---DFVGAF--PHVD-FIQGYGMTES---------TAVGTR-GFNTK 372
S P N + E +G P VD + Q TE+ A+ + G T+
Sbjct: 384 GSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQ----TETGGFMITPLPGAIELKAGSATR 439
Query: 373 KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP---------GTMKEYINNA 423
F +Q +VD G + G L + G + +
Sbjct: 440 PF----------FGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFE--- 485
Query: 424 DATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEIL 483
ST + +GD A DEDGY +I R+ +V+ +G+++ A++E+ L+ HP+I
Sbjct: 486 QTYFSTF--KNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIA 543
Query: 484 DVAVTGAMDKVLGEIPVAFVVRRDGSTLTEA---AVIDYLAQRVAPYKKVRRVVFTKSIP 540
+ AV G + G+ A+V G + V +++ + + P + +T S+P
Sbjct: 544 EAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLP 603
Query: 541 KSAAGKVLRRELRK 554
K+ +GK++RR LRK
Sbjct: 604 KTRSGKIMRRILRK 617
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 7e-23
Identities = 80/381 (20%), Positives = 140/381 (36%), Gaps = 39/381 (10%)
Query: 197 PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY-LSSEAVFLAVL 255
++ D I+++SGTTG KG +++H N ++ F + + + + LA
Sbjct: 140 HSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLS----FTNWMIEDAAFDVPKQPQMLAQP 195
Query: 256 PM-FHIYGLSLFALGLLSLGPSVVVMRR---FEASEMLKVIDKYGVTHFPVVPPILMALT 311
P F + + L+LG ++ + + + ++ I + V + P
Sbjct: 196 PYSFDLSVMYWA--PTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAM 253
Query: 312 KAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTEST-AVGTRGFN 370
+ C + +L FP I YG TE+T A+
Sbjct: 254 -LSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEIT 312
Query: 371 TKKFSKYFSV--GLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMS 428
+ Y + G P+ ++D +G L G GE+ + GP K Y+NN + T
Sbjct: 313 REMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKT-- 369
Query: 429 TIDKE-------GWL-HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHP 480
E HTGDI ED L RL IKY GY+I D+ L P
Sbjct: 370 ---AEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSP 426
Query: 481 EILDVAVTGAMDKVLGEIP--VAFVVRRDGSTLTE-------AAVIDYLAQRVAPYKKVR 531
+ ++ +A++V +DG A+ + + Y
Sbjct: 427 MVASAVAV-PRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPS 485
Query: 532 RVVFTKSIPKSAAGKVLRREL 552
+ ++ S+P + GK+ + L
Sbjct: 486 KFLYRDSLPLTPNGKIDIKTL 506
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 1e-21
Identities = 130/562 (23%), Positives = 224/562 (39%), Gaps = 115/562 (20%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI--VIPMN 124
SI+Y +L V VA L + G+ +GD V + +P + LA+ +GAI V+
Sbjct: 113 SITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAG 172
Query: 125 PLLSVSEIKKQVTLCKTKISL----------AFTIYENVDK-LRSWGTTPVVAVPENLVN 173
S + ++ ++ +K+ + VD LR V V N
Sbjct: 173 --FSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNN 230
Query: 174 ---DFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAA 230
F R D+ + +D +LY+SG+TGA KG + + ++
Sbjct: 231 PSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLL- 289
Query: 231 VELFVRFEASQYEYLSSEAVFLAVLPMFH---IY----------GLSLFALGLLSLGPSV 277
L+ F H ++ G + G L G +
Sbjct: 290 -----------GALLTMRYTF-----DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCAT 333
Query: 278 VVMRRFE-------ASEMLKVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVS 329
+V FE S +ID++ VT F V P L L +A + +SLKSL+ +
Sbjct: 334 LV---FEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLG 390
Query: 330 SGAAPANSKIIE---DFVGAF--PHVD-FIQGYGMTESTAV------GTR-----GFNTK 372
S P +++ E + +G P VD + Q TES + G G +
Sbjct: 391 SVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQ----TESGSHLVTPLAGGVTPMKPGSASF 446
Query: 373 KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGST-GELWLRGP---------GTMKEYINN 422
F I A V+D G L G L ++ Y+
Sbjct: 447 PF----------FGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYL-- 494
Query: 423 ADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEI 482
D ++ G+ TGD A D+DGY++I+ R+ +V+ +G+++S A++E +I P +
Sbjct: 495 -DTYLNPY--PGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIV 551
Query: 483 LDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAA----------VIDYLAQRVAPYKKVRR 532
+ AV G D + G+ AFVV ++ S+ + A ++ + + + P+ +
Sbjct: 552 AECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKL 611
Query: 533 VVFTKSIPKSAAGKVLRRELRK 554
++ +PK+ +GK++RR LRK
Sbjct: 612 IILVDDLPKTRSGKIMRRILRK 633
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 93.6 bits (232), Expect = 6e-21
Identities = 49/262 (18%), Positives = 79/262 (30%), Gaps = 34/262 (12%)
Query: 179 RFSDFHKLIAGKFDLVERPVIR-------QQDTAAILYSSGTTGASKGAELTHGNFIAAV 231
+D + L + PV + S GTTGA K A +
Sbjct: 61 TINDLRQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALI 120
Query: 232 ELFVRFEASQYEYLSSEAVFLAVLPMF-HIYGLSLFALG-------------------LL 271
+ Q+ LA +P HI G L
Sbjct: 121 SWRMS--GYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSL 178
Query: 272 SLGPSVVVMRRFEAS--EMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVS 329
S G + V + ++ + + PP+L L K + + +SL Q++
Sbjct: 179 SEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV-LQMKQSLAQIT 237
Query: 330 SGAAPANSKIIEDFVGA-FPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQ 388
G N I+ P +F YG T + V T + S+ +P I
Sbjct: 238 LGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLITSE-SQQVIYDSFSPFIT 296
Query: 389 AKVVDWVNGCFLPPGSTGELWL 410
VVD + + G G + +
Sbjct: 297 YDVVDSITAQTVEYGERGNVIV 318
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 8e-21
Identities = 76/381 (19%), Positives = 128/381 (33%), Gaps = 38/381 (9%)
Query: 197 PVIRQQDTAAILYSSGTTGASKGAELTHG---NFIAAVELFVRFEASQYEYLSSEAVFLA 253
+ A +LY+SG+TG KG ++ +F A + A + L FL
Sbjct: 170 NNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLC 229
Query: 254 VLPM-FHIYGLSLFALGLLSLGPSVVVMRRFEASEML-KVIDKYGVTHFPVVPPILMALT 311
+ F ++ +F G V R + L + + GVTH +VP +L
Sbjct: 230 LASRAFDVHIGEMF--LAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTG 287
Query: 312 KAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNT 371
+ L + G + + + + V + YG TE T +G
Sbjct: 288 LVPED-----APHLVYLGVGGEKMTPRTQQIW-SSSDRVALVNVYGPTEVT-IGCSAGRI 340
Query: 372 KKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID 431
S +G + A V+ + + G GEL + G Y+N DA
Sbjct: 341 LPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDI 400
Query: 432 KEGWLH-TGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVT-- 488
++ TGDI D D + + R E +K G ++ ++ V+ VT
Sbjct: 401 NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLL 460
Query: 489 ----GAMDKVLGEIPVAFVVRRDGSTLTEAAVI------------DYLAQRVAPYKKVRR 532
G + L V+FV + E I Q + Y
Sbjct: 461 LNHPGTSKQFL----VSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDF 516
Query: 533 VVFTKSIP-KSAAGKVLRREL 552
++ IP + + K + L
Sbjct: 517 IIPISFIPLRDTSAKTDAKAL 537
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 1e-20
Identities = 83/382 (21%), Positives = 137/382 (35%), Gaps = 55/382 (14%)
Query: 197 PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLP 256
I D A I+Y+SGTTG KG TH N + Y S + FL+V
Sbjct: 602 TAIDPNDPAYIMYTSGTTGKPKGNITTHANIQG------LVKHVDYMAFSDQDTFLSVSN 655
Query: 257 M-FHIYGLSLFALGLLSLGPSVVVMRR---FEASEMLKVIDKYGVTHFPVVPPILMALTK 312
F + + + +++ + + +I + V + LT
Sbjct: 656 YAFDAFTFDFY--ASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTD 713
Query: 313 AAKGLCGNSLKSLKQVSSG--AAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFN 370
A + K L+ + G A + + I YG TE T T
Sbjct: 714 AGEDWM----KGLRCILFGGERASV--PHVRKALRIMGPGKLINCYGPTEGTVFATAHVV 767
Query: 371 TKKFSKYFSV--GLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT-- 426
S+ G N +++ P G+ GEL + G G K Y+N AD T
Sbjct: 768 HDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKE 826
Query: 427 ------------MSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLET 474
+ TGD+A + DG + R+ + +K G++I ++E
Sbjct: 827 KFIENPFKPGETL--------YRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEK 878
Query: 475 VLICHPEILDVAVT----GAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKV 530
L +P + D V + D + A++V R L+ V +L +++ Y
Sbjct: 879 QLQEYPGVKDAVVVADRHESGDASI----NAYLVNRTQ--LSAEDVKAHLKKQLPAYMVP 932
Query: 531 RRVVFTKSIPKSAAGKVLRREL 552
+ F +P + GKV +R L
Sbjct: 933 QTFTFLDELPLTTNGKVNKRLL 954
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 2e-20
Identities = 74/380 (19%), Positives = 147/380 (38%), Gaps = 44/380 (11%)
Query: 197 PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY-LSSEAVFLAVL 255
+++ +T I+Y+SG+TG KG +++ N + + ++ +S +FL
Sbjct: 138 QWVKEHETFYIIYTSGSTGNPKGVQISAANLQS------FTDWICADFPVSGGKIFLNQA 191
Query: 256 PM-FHIYGLSLFALGLLSLGPSVVVMRR---FEASEMLKVIDKYGVTHFPVVPPILMALT 311
P F + + L+ L G ++ + + + + + + K G+ + P +
Sbjct: 192 PFSFDLSVMDLY--PCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCL 249
Query: 312 KAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTEST-AVGTRGFN 370
G + L + + + FP YG TE+T AV +
Sbjct: 250 -MDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEIT 308
Query: 371 TKKFSKYFSV--GLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMS 428
S+ S+ G P++ ++D G LP G GE+ + GP + Y+ + T
Sbjct: 309 NDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELT-- 365
Query: 429 TIDKE-------GWL-HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHP 480
++ W TGD + +DG ++ RL IK +GY++ ++E +
Sbjct: 366 ---EKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQ 421
Query: 481 EILDVAVT----GAMDKVLGEIPVAFVVRRDGSTLTEAAVID----YLAQRVAPYKKVRR 532
+ V + L +A +V + E + LA + Y R+
Sbjct: 422 YVRSAVVIPYQPNGTVEYL----IAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRK 477
Query: 533 VVFTKSIPKSAAGKVLRREL 552
++ I +A GK+ R+ +
Sbjct: 478 FIYQDHIQMTANGKIDRKRI 497
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 6e-20
Identities = 70/378 (18%), Positives = 144/378 (38%), Gaps = 53/378 (14%)
Query: 197 PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY-LSSEAVFLAVL 255
+ D A ++Y+SGTTG KG L H + ++ +
Sbjct: 177 VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISN------LKVFFENSLNVTEKDRIGQFA 230
Query: 256 PM-FHIYGLSLFALGLLSLGPSVVVMRR---FEASEMLKVIDKYGVTHFPVVPPILMALT 311
+ F +F L G S+ ++ + + + + I++ +T + P ++ L
Sbjct: 231 SISFDASVWEMF--MALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD 288
Query: 312 KAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNT 371
+ S++ + + + + ++ + V +I YG TE+T + +
Sbjct: 289 PE-------RILSIQTLITAGSATSPSLVNKW---KEKVTYINAYGPTETT-ICATTWVA 337
Query: 372 KKFSKYFSV--GLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMST 429
K + SV G N Q +VD N G GEL + G G + Y + T
Sbjct: 338 TKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELT--- 393
Query: 430 IDKEGWLH-----------TGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLIC 478
+ ++ TGD A + DG + + R+ +K G+++ ++E++L+
Sbjct: 394 --SQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLK 451
Query: 479 HPEILDVAVT----GAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVV 534
H I + AV+ L A+ V + + + ++ + Y +
Sbjct: 452 HMYISETAVSVHKDHQEQPYL----CAYFVSEKH--IPLEQLRQFSSEELPTYMIPSYFI 505
Query: 535 FTKSIPKSAAGKVLRREL 552
+P ++ GK+ R++L
Sbjct: 506 QLDKMPLTSNGKIDRKQL 523
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 9e-20
Identities = 76/380 (20%), Positives = 152/380 (40%), Gaps = 44/380 (11%)
Query: 197 PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY-LSSEAVFLAVL 255
++ + I+Y+SG+TG KG ++T+ ++ + + ++ L + VFL
Sbjct: 139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVS------FTKWAVEDFNLQTGQVFLNQA 192
Query: 256 PM-FHIYGLSLFALGLLSLGPSVVVMRR---FEASEMLKVIDKYGVTHFPVVPPILMALT 311
P F + + ++ L G ++ + + ++ +++ + + P
Sbjct: 193 PFSFDLSVMDIY--PSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCL 250
Query: 312 KAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTEST-AVGTRGFN 370
A + L ++K +++ + FP + YG TE+T AV
Sbjct: 251 MEA-SFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVT 309
Query: 371 TKKFSKYFSV--GLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMS 428
+ +Y S+ G + + ++ +G P G GE+ + GP Y+ + + T
Sbjct: 310 EEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELT-- 366
Query: 429 TIDKE-------GWLH-TGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHP 480
++ + TGD Y E+G L+ RL IK +GY++ ++E L
Sbjct: 367 ---EKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACS 422
Query: 481 EILDVAVT----GAMDKVLGEIPVAFVVRRDGSTLTEAAVI----DYLAQRVAPYKKVRR 532
+ + G L +A VV + S E + L +R+ Y R+
Sbjct: 423 YVEGAVIVPIKKGEKYDYL----LAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRK 478
Query: 533 VVFTKSIPKSAAGKVLRREL 552
++ SIP + GKV R++L
Sbjct: 479 FMYQSSIPMTPNGKVDRKKL 498
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 1e-16
Identities = 80/391 (20%), Positives = 129/391 (32%), Gaps = 75/391 (19%)
Query: 196 RPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY-LSSEAVFLAV 254
RP A I +SSGTTG K TH R Q + + FL
Sbjct: 158 RPCFAADQIAYINFSSGTTGRPKAIACTHAG-------ITRLCLGQSFLAFAPQMRFL-- 208
Query: 255 LPMFHIYG--LSLFAL-GLLSLGPSVVVMRR--FEASEMLKVIDKYGVTHFPVVPPILMA 309
+ + + G L G V+ + + ++I + G + +
Sbjct: 209 --VNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNT 266
Query: 310 LTKAAKGLCGNSLKSLKQVSSG--AAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTR 367
L G L+Q+ +G + + P + + GYG TE+T
Sbjct: 267 LVDLDPDCLG----GLRQLLTGGDILSVPH--VRRALLRHPRLHLVNGYGPTENTTFTCC 320
Query: 368 GFNTKKFSKYFSV--GLLAPNIQAKVVDWVNGCFLP-PGSTGELWLRGPGTMKEYINNAD 424
T + + G ++D +G + P GE+ G G + Y N+A
Sbjct: 321 HVVTDDDLEEDDIPIGKAIAGTAVLLLD-EHGQEIAEPDRAGEIVAFGAGLAQGYRNDAA 379
Query: 425 AT---------------MSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISP 469
T TGD A +DE G L + R +K NGY++
Sbjct: 380 RTRASFVELPYRGRLLRA--------YRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDL 431
Query: 470 ADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS--------TLTEAAVIDYLA 521
LE P ILD A+ +VR T A L
Sbjct: 432 PALEQRFRRQPGILDCAL---------------LVRERNGVKQLLCAWTGKADASPQALL 476
Query: 522 QRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
+++ +++ V +++P +A GK+ R L
Sbjct: 477 RQLPTWQRPHACVRVEALPLTAHGKLDRAAL 507
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 85/443 (19%), Positives = 145/443 (32%), Gaps = 89/443 (20%)
Query: 149 IYENV----DKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKL-IAGKFDLVERP-----V 198
Y+NV + G P +D K +D K + K DL +
Sbjct: 40 AYDNVPHYRRTFDAAGVHP---------DDLKS--LADLAKFPFSTKNDLRDNYPFGLFA 88
Query: 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVR-FEASQYEYLSSEAVFLAVLPM 257
+ ++ + SSGTTG T + + R A+
Sbjct: 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAG---GRPGDTL------ 139
Query: 258 FHIYGLSLFA------LGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALT 311
+ +G LF G LG VV M + + +++I + V P ++ L
Sbjct: 140 HNAFGYGLFTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLI 199
Query: 312 KAAK--GLCGNSLKSLKQVSSGA---APANSKIIEDFVGAFPHVDFIQGYGMTESTAVGT 366
G+ SLK GA A +E VG D + YG++E G
Sbjct: 200 DEMVRQGMDPAES-SLKIGIFGAEPWTQALRNEVETRVGI----DALDIYGLSEVMGPGV 254
Query: 367 RGFNTKKFSKYFSVGLLAP--NIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNAD 424
+ G + + +++D V G LP GS GEL
Sbjct: 255 ACECVET-----KDGPVIWEDHFYPEIIDPVTGEVLPDGSQGEL---------------- 293
Query: 425 ATMSTIDKEGW----LHTGDIAYFD-EDG-----YLYIVDRLKEVIKYNGYQISPADLET 474
+++ KE T D+ I R +++ G + P+ +E
Sbjct: 294 -VFTSLTKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEE 352
Query: 475 VLICHPEI-----LDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKK 529
+++ P + + ++ G MD++ + + + AA+ L R+
Sbjct: 353 IVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMVG 412
Query: 530 VR---RVVFTKSIPKSAAGKVLR 549
V V+ IP +A GK R
Sbjct: 413 VSSGVTVLAAGGIPATATGKARR 435
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 1e-07
Identities = 79/623 (12%), Positives = 161/623 (25%), Gaps = 214/623 (34%)
Query: 2 EKFLQTFSSERINTS-QWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHK--HNGRTA 58
E+ +Q F E + + ++ + P+ + +I +N
Sbjct: 76 EEMVQKFVEEVLRINYKF------LMSPIKTEQRQPS----MMTRMYIEQRDRLYND--- 122
Query: 59 LVDSLSGYSISYPQLFPLVQSVASGLRHHFGIS-QG----------------DAVLLLLP 101
+ Y++S Q + ++ LR + G V +
Sbjct: 123 -NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 102 NSIYFPVIFLALLYLG------AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDK 155
I++ L L ++ + LL + + ++ I+ +
Sbjct: 182 FKIFW-------LNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDHSSNIKLRIHSIQAE 233
Query: 156 LRSWGTTPVVAVPENL-----VNDFKEGRFSDFHKLIAGKFDLVERPVI--RQQDTAAIL 208
LR + L V + K F+L + ++ R + L
Sbjct: 234 LRRLLKSKPY--ENCLLVLLNVQNAK----------AWNAFNLSCKILLTTRFKQVTDFL 281
Query: 209 YSSGTT-----GASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGL 263
++ TT S LT L +++ + + L E L P L
Sbjct: 282 SAATTTHISLDHHSMT--LTPDE---VKSLLLKYLDCRPQDLPREV--LTTNPRR----L 330
Query: 264 SLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLK 323
S+ A + + L D +
Sbjct: 331 SIIAESI---------------RDGLATWDNW---------------------------- 347
Query: 324 SLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLL 383
K V+ + IIE + ++ + + + +V F S
Sbjct: 348 --KHVNC---DKLTTIIESSLNVLEPAEYRKMF---DRLSV---------FPP--SA--- 385
Query: 384 APNIQAKVVD--WVNGCFLPPGSTGE---------LWLRGPGTMKEYINN-ADATMSTID 431
+I ++ W + + L + P I + ++
Sbjct: 386 --HIPTILLSLIWFD---VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 432 KEGWLH--------------TGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLI 477
E LH + D+ D Y Y + G+ + + +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY---------SHIGHHLKNIEHPERMT 491
Query: 478 CHPEI-LDVAVTGAMDKVLGEIPVAFV---VRRDGSTLTEAAVIDYLAQRVAPYKKVRRV 533
+ LD F+ +R D + + I Q++ YK
Sbjct: 492 LFRMVFLDFR---------------FLEQKIRHDSTAWNASGSILNTLQQLKFYKP---- 532
Query: 534 VFTKSIPKSAAGKVLRRELRKFL 556
+ PK L + FL
Sbjct: 533 YICDNDPKYER---LVNAILDFL 552
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 75/411 (18%), Positives = 135/411 (32%), Gaps = 82/411 (19%)
Query: 181 SDFHKL-IAGKFDLVERP------VIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVEL 233
D K+ K D+ ++D I SSGTTG + + + L
Sbjct: 58 DDIRKIPFTTKSDMRANYPFGLVAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANL 117
Query: 234 FVR-FEASQYEYLSSEAVFLAVLPMFHIYGLSLFA------LGLLSLGPSVVVMRRFEAS 286
R + VF + G +F G LG V +
Sbjct: 118 VARCLYMVG---IRKTDVFQ------NSSGYGMFTGGLGFQYGAERLGCLTVPAAAGNSK 168
Query: 287 EMLKVIDKYGVTHFPVVPPILMALTKAAK--GLCGNSLKSLKQVSSGAAPANSKI---IE 341
+K I + T +P + L + + G+ +LK + GA P + IE
Sbjct: 169 RQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRET-TLKTLVIGAEPHTDEQRRKIE 227
Query: 342 DFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGL--LAPNIQAKVVDWVNGCF 399
+ V +GMTE G F ++ + G+ +++D G
Sbjct: 228 RMLN----VKAYNSFGMTEMNGPGV-AFECQEQN-----GMHFWEDCYLVEIIDPETGEP 277
Query: 400 LPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGW----LHTGDIAYFDED----GYLY 451
+P G GEL ++T+D+E T D+ G +
Sbjct: 278 VPEGEIGEL-----------------VLTTLDREMMPLIRYRTRDLTRILPGKCPCGRTH 320
Query: 452 -----IVDRLKEVIKYNGYQISPADLETVLICHPEI-----LDVAVTGAMDKVLGEIPVA 501
I R ++ G I P +E +L+ PE+ + + D++ + V
Sbjct: 321 LRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEM--IVEVE 378
Query: 502 FVVRRDGSTLTEAAVIDYLAQRVAPYKKVR---RVVFTKSIPKSAAGKVLR 549
+ + + + +++ V ++V S+P+S GK +R
Sbjct: 379 LSDLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQS-EGKAVR 428
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 79/446 (17%), Positives = 137/446 (30%), Gaps = 98/446 (21%)
Query: 149 IYENV----DKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKL-IAGKFDLVERP-----V 198
Y++ K G P +D K +D + K DL +
Sbjct: 38 AYDHSPVYRRKFDEAGVHP---------DDLKT--LADLSRFPFTTKGDLRDSYPFGMFA 86
Query: 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVR-FEASQYEYLSSEAVFLAVLPM 257
+ Q + I SSGTTG T + L R A+
Sbjct: 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAG---ARRGDKVH----- 138
Query: 258 FHIYGLSLFA------LGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALT 311
YG LF G G +V+ + + +++I + V P ++++
Sbjct: 139 -VSYGYGLFTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIA 197
Query: 312 KAAK--GLCGNSLKSLKQVSSGAAPANSKI---IEDFVGAFPHVDFIQGYGMTESTAVGT 366
+ GL SL+ GA P + + IE +G +D + YG++E G
Sbjct: 198 DEIERQGLDPVQS-SLRIGIFGAEPWTNDMRVAIEQRMG----IDAVDIYGLSEVMGPGV 252
Query: 367 RGFNTKKFSKYFSVGLLAP--NIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNAD 424
+ G + +++D G LP G GEL
Sbjct: 253 ASECVET-----KDGPTIWEDHFYPEIIDPETGEVLPDGELGEL---------------- 291
Query: 425 ATMSTIDKEGW----LHTGDIAYFDE---------DGYLYIVDRLKEVIKYNGYQISPAD 471
+++ KE T D+ + I R +++ G + P
Sbjct: 292 -VFTSLTKEALPIIRYRTRDLTRLLPGTARTMRRMEK---ITGRSDDMMIVRGVNVFPTQ 347
Query: 472 LETVLICHPEI-----LDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAP 526
+E L+ + + + G +D + + D + + A LA +
Sbjct: 348 IEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAK--QALAYDIKS 405
Query: 527 YKKVR---RVVFTKSIPKSAAGKVLR 549
V V+ I +S GK R
Sbjct: 406 LIGVTAVINVLPVNGIERS-VGKARR 430
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 560 | |||
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.98 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.55 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.52 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 99.14 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 99.11 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 99.03 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 88.02 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 87.46 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 86.46 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 80.75 |
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-85 Score=693.31 Aligned_cols=522 Identities=38% Similarity=0.627 Sum_probs=454.7
Q ss_pred CceeccCCCCCCCCCCCCCCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEc
Q 037622 23 TGIYHSKHPSVNLPANDSLLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLL 100 (560)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~ 100 (560)
..++.++.++..+|. ..|+++++.++++ ++++|+++..+++++||+||.++++++|++|.+ +|+++||+|+|++
T Consensus 6 ~~i~~~~~~~~~~p~---~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~ 81 (536)
T 3ni2_A 6 EFIFRSKLPDIYIPK---NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNK-IGIQQGDVIMLFL 81 (536)
T ss_dssp CCCBCCSSCCCCCCS---SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEEC
T ss_pred ceEEecCCCCCCCCC---CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEc
Confidence 346667766666653 3799999998875 569999997667899999999999999999999 8999999999999
Q ss_pred CCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC---CCCEEEecCCCcccccC
Q 037622 101 PNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG---TTPVVAVPENLVNDFKE 177 (560)
Q Consensus 101 ~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~~ 177 (560)
+|++++++++|||+++|++++|++|.++.+++.++++.+++ ++++++......+.... ...++.++.. .
T Consensus 82 ~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 153 (536)
T 3ni2_A 82 PSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRA--KLLITQACYYEKVKDFARESDVKVMCVDSA------P 153 (536)
T ss_dssp CSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTE--EEEEECGGGTHHHHHHHHHHTCEEEESSCC------C
T ss_pred CCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCC--EEEEEChHHHHHHHHHHhhcCceEEEecCC------C
Confidence 99999999999999999999999999999999999999999 99999987665544321 2445554432 2
Q ss_pred CCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecCh
Q 037622 178 GRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPM 257 (560)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 257 (560)
.....+.++..............++++++|+|||||||.||+|+++|+++.+.+........ ....+.++|++++.+|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~~~~~~~~d~~l~~~p~ 232 (536)
T 3ni2_A 154 DGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN-PNLYFHSEDVILCVLPM 232 (536)
T ss_dssp TTCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS-CSSCCCTTCCEEECSCT
T ss_pred CCccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc-ccccCCCCCEEEEecCh
Confidence 23344555554433333444567899999999999999999999999999987766543111 02457789999999999
Q ss_pred hhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCH
Q 037622 258 FHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANS 337 (560)
Q Consensus 258 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~ 337 (560)
+|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++. ......+++++|.+++|||++++
T Consensus 233 ~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~l~~lr~i~~gGe~l~~ 311 (536)
T 3ni2_A 233 FHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKS-PDLDKHDLSSLRMIKSGGAPLGK 311 (536)
T ss_dssp TSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTC-SCGGGSCCTTCCEEEEESSCCCH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhC-cccccCCCccceEEEECCCCCCH
Confidence 99999977788999999999999999999999999999999999999999999876 44455678999999999999999
Q ss_pred HHHHHHHHhCCCCeeecccchhhcccccccCC---CCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEeccc
Q 037622 338 KIIEDFVGAFPHVDFIQGYGMTESTAVGTRGF---NTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPG 414 (560)
Q Consensus 338 ~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~---~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~ 414 (560)
++.+++.+.||++++++.||+||++.+++.+. ........+++|+|+|+++++|+|++++++++.|+.|||+|+|++
T Consensus 312 ~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~ 391 (536)
T 3ni2_A 312 ELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQ 391 (536)
T ss_dssp HHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTT
T ss_pred HHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcc
Confidence 99999999999999999999999997765442 122234678999999999999999888999999999999999999
Q ss_pred chhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCC
Q 037622 415 TMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKV 494 (560)
Q Consensus 415 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~ 494 (560)
++.||+++|+.|...|+.+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.+++.
T Consensus 392 v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~ 471 (536)
T 3ni2_A 392 IMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDED 471 (536)
T ss_dssp SCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETT
T ss_pred cchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCC
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 495 LGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 495 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
.++.++++|+..++...+.++++++++++|+.|++|+.++++++||+|++|||+|++|+++++.
T Consensus 472 ~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 472 AGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp TEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred CCceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 9999999999988888889999999999999999999999999999999999999999998753
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-82 Score=669.40 Aligned_cols=520 Identities=30% Similarity=0.476 Sum_probs=441.3
Q ss_pred eeccCCCCCCCCCCCCCCCHHH-HHhccCCC-CceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCC
Q 037622 25 IYHSKHPSVNLPANDSLLDVDS-FIFSHKHN-GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPN 102 (560)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~ 102 (560)
+|.++.+....|. ..|+.+ ++.++++. +++|+++...++++||+||.++++++|.+|.+ +|+++||+|+|+++|
T Consensus 11 ~~~~~~~~~~~p~---~~~l~~~~l~~~~~~~~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n 86 (548)
T 2d1s_A 11 VVGPKPFYPIEEG---SAGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-YGLVVDGRIALCSEN 86 (548)
T ss_dssp EECCCCSSCCCSS---CHHHHHHHHHHHHHHHTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECSS
T ss_pred EecCCCCCCCCCC---cCcHHHHHHHhhhcccCCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCC
Confidence 5555555444432 257888 66555421 78999985447899999999999999999999 899999999999999
Q ss_pred CChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC-----CCCEEEecCCCcccccC
Q 037622 103 SIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG-----TTPVVAVPENLVNDFKE 177 (560)
Q Consensus 103 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~-----~~~vi~~~~~~~~~~~~ 177 (560)
++++++++|||+++|++++|++|.++.+++.++++.+++ ++++++......+.... ...++.++... ..
T Consensus 87 ~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 160 (548)
T 2d1s_A 87 CEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKP--TIVFSSKKGLDKVITVQKTVTTIKTIVILDSKV----DY 160 (548)
T ss_dssp CTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCC--SEEEECTTTHHHHHHHHHHSTTCCEEEETTCSS----CB
T ss_pred chhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCC--eEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcc----cc
Confidence 999999999999999999999999999999999999999 99999887665543321 13344443221 00
Q ss_pred CCcccHHHhhcccCCC-CCCCCCC-----C-CCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcE
Q 037622 178 GRFSDFHKLIAGKFDL-VERPVIR-----Q-QDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAV 250 (560)
Q Consensus 178 ~~~~~~~~~~~~~~~~-~~~~~~~-----~-~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (560)
.....+.++....... ....... + +++++|+|||||||.||+|+++|+++...+........ ...+.++|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~ 238 (548)
T 2d1s_A 161 RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTA 238 (548)
T ss_dssp TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCE
T ss_pred cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccce
Confidence 1223355544332111 1111122 4 89999999999999999999999999988776654110 146788999
Q ss_pred EEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeec
Q 037622 251 FLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSS 330 (560)
Q Consensus 251 ~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~ 330 (560)
+++.+|++|.+++...++.++ .|+++++.+.+++..+++.++++++|+++++|+++..|.+. ......+++++|.+++
T Consensus 239 ~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~l~~lr~i~~ 316 (548)
T 2d1s_A 239 VLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS-ELLNKYDLSNLVEIAS 316 (548)
T ss_dssp EEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHC-SCGGGSCCTTCCEEEE
T ss_pred EEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhC-cccccccccceeEEEE
Confidence 999999999999975577778 99999999999999999999999999999999999999875 3334457889999999
Q ss_pred ccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEE
Q 037622 331 GAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWL 410 (560)
Q Consensus 331 ~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v 410 (560)
||+++++++.+++.+.|+++++++.||+||++.+++.... ...+.+++|+|+|+++++|+|++++++++.|+.|||+|
T Consensus 317 gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v 394 (548)
T 2d1s_A 317 GGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCV 394 (548)
T ss_dssp CSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT--TCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEE
T ss_pred cCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCc--ccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEE
Confidence 9999999999999999988999999999999987765432 23467899999999999999988899999999999999
Q ss_pred ecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcc
Q 037622 411 RGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGA 490 (560)
Q Consensus 411 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~ 490 (560)
+|++++.||+++|+.|.+.|+.+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.
T Consensus 395 ~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~ 474 (548)
T 2d1s_A 395 KGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGV 474 (548)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEE
T ss_pred CCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEE
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcc-eEEEecCCCCCCCCcchHHHHHHHHhccC
Q 037622 491 MDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVR-RVVFTKSIPKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 491 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-~i~~~~~lP~t~~GKi~r~~L~~~~~~~~ 560 (560)
+++..|+.++++|++.++...+.++++++|+++|+.|++|+ .++++++||+|++||++|++|++.+.+.|
T Consensus 475 ~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 545 (548)
T 2d1s_A 475 PDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPV 545 (548)
T ss_dssp EETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC
T ss_pred EcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhh
Confidence 99988999999999988777889999999999999999999 89999999999999999999999998764
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-82 Score=678.07 Aligned_cols=545 Identities=23% Similarity=0.307 Sum_probs=448.1
Q ss_pred hhhhhhccCCCCCCCCCCCCCCceeccC----CCCCCCCCCCCCC-CHHHHHhccCC--CCceEEEEC----CCCceecH
Q 037622 2 EKFLQTFSSERINTSQWYSPETGIYHSK----HPSVNLPANDSLL-DVDSFIFSHKH--NGRTALVDS----LSGYSISY 70 (560)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~a~~~~----~~~~~~Ty 70 (560)
++||.+.+. ...|.++...+.... .|...|+. +..+ +++++|.++++ ++++|+++. ..++++||
T Consensus 36 ~~~w~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~wf~-~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY 110 (652)
T 1pg4_A 36 DTFWGEQGK----ILDWITPYQKVKNTSFAPGNVSIKWYE-DGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISY 110 (652)
T ss_dssp HHHHHHHGG----GSCCSBCCSCCEEEECCTTCCEEEEST-TCEECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEH
T ss_pred HHHHHHHHh----hCceecCCcccccCccccCCCCCEECC-CCChhHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeH
Confidence 467777654 267888877776543 33345654 3333 45666666654 779999862 13478999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeec
Q 037622 71 PQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIY 150 (560)
Q Consensus 71 ~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~ 150 (560)
+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.+++ +++++++
T Consensus 111 ~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~--~~li~~~ 187 (652)
T 1pg4_A 111 RELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSS--RLVITAD 187 (652)
T ss_dssp HHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTC--SEEEEES
T ss_pred HHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCC--CEEEEcC
Confidence 9999999999999999 899999999999999999999999999999999999999999999999999999 8888876
Q ss_pred cchH------------HhhhcC---C-CCEEEecCCCcc-cccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCC
Q 037622 151 ENVD------------KLRSWG---T-TPVVAVPENLVN-DFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGT 213 (560)
Q Consensus 151 ~~~~------------~~~~~~---~-~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGT 213 (560)
.... ...... . ..++.++..... .........+.+++.............++++++|+|||||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGT 267 (652)
T 1pg4_A 188 EGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGS 267 (652)
T ss_dssp EEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCS
T ss_pred ccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCC
Confidence 5321 111111 1 234554422100 0111123346666554333233345568999999999999
Q ss_pred CCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC----cCHHHHH
Q 037622 214 TGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR----FEASEML 289 (560)
Q Consensus 214 TG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~ 289 (560)
||.||||+++|++++......... .++++++|++++..|++|+.+....++.+|..|+++++.+. +++..++
T Consensus 268 TG~PKgV~~sh~~~~~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~ 343 (652)
T 1pg4_A 268 TGKPKGVLHTTGGYLVYAATTFKY----VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343 (652)
T ss_dssp SSSCEEEEEESHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHH
T ss_pred CCCCceEEECchHHHHHHHHHHHH----hcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHH
Confidence 999999999999988765433221 36688999999999999999987688899999999999875 5899999
Q ss_pred HHHHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCC--CCeeecccchhhcccccc
Q 037622 290 KVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP--HVDFIQGYGMTESTAVGT 366 (560)
Q Consensus 290 ~~l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~ 366 (560)
+.++++++|+++++|++++.|.+.... ....++++||.+++|||++++++++++.+.++ ++++++.||+||++..++
T Consensus 344 ~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~ 423 (652)
T 1pg4_A 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMI 423 (652)
T ss_dssp HHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSB
T ss_pred HHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccccccee
Confidence 999999999999999999999876322 34467899999999999999999999999883 289999999999998766
Q ss_pred cCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEec--ccchhhhcCCchhhhhccC--CCCceecCceE
Q 037622 367 RGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG--PGTMKEYINNADATMSTID--KEGWLHTGDIA 442 (560)
Q Consensus 367 ~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~ 442 (560)
.........+.+++|+|+||++++|+| +++++++.|+.|||+|+| |+++.||+++|+.+...+. .+|||+|||+|
T Consensus 424 ~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg 502 (652)
T 1pg4_A 424 TPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGA 502 (652)
T ss_dssp CCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEE
T ss_pred cCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEE
Confidence 544333345678999999999999999 679999999999999999 7999999999998877652 37899999999
Q ss_pred EEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCC---HHHHHHH
Q 037622 443 YFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLT---EAAVIDY 519 (560)
Q Consensus 443 ~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~ 519 (560)
++|+||+++++||+||+||++|++|++.|||++|.+||+|.+++|++.+++..|+.++++|++.++...+ .++|+++
T Consensus 503 ~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~ 582 (652)
T 1pg4_A 503 RRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNW 582 (652)
T ss_dssp EECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred EEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998899999999998775544 4789999
Q ss_pred HHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 520 LAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 520 ~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
|+++|++|++|+.|+++++||+|++|||+|++|++.+.++
T Consensus 583 l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 583 VRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp HHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred HHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 9999999999999999999999999999999999998764
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-82 Score=669.48 Aligned_cols=509 Identities=28% Similarity=0.458 Sum_probs=399.9
Q ss_pred cCCCCCCCCCCCCCCCHHHHHhccCC--CCceEEEECCCC------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEE
Q 037622 28 SKHPSVNLPANDSLLDVDSFIFSHKH--NGRTALVDSLSG------YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLL 99 (560)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~------~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~ 99 (560)
...|+..+|. .|+.++|.++++ ++++|+++...+ +++||+||.++++++|.+|.+ .|+++||+|+|+
T Consensus 9 ~~~p~~~~~~----~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~ 83 (549)
T 3g7s_A 9 IGFPSLYYPK----ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISR-KGVRKGEHVGVC 83 (549)
T ss_dssp CCCCCCCCCC----CCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEE
T ss_pred cCCCCCCcCC----CCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEE
Confidence 3445555555 889999888775 679999976321 899999999999999999999 799999999999
Q ss_pred cCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC----CCEEEecCCCcccc
Q 037622 100 LPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT----TPVVAVPENLVNDF 175 (560)
Q Consensus 100 ~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~----~~vi~~~~~~~~~~ 175 (560)
++|++++++++|||+++|++++|++|.++.+++.++++.+++ ++++++......+..... ..++..+.
T Consensus 84 ~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------ 155 (549)
T 3g7s_A 84 IPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEA--TTLVVHSMLYENFKPVLEKTGVERVFVVGG------ 155 (549)
T ss_dssp CCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTC--SEEEEEGGGHHHHHHHHTTSCCCEEEEETC------
T ss_pred CCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCC--CEEEEChHHHHHHHHHHhhCCCcEEEEeCC------
Confidence 999999999999999999999999999999999999999999 999999877665543221 22333321
Q ss_pred cCCCcccHHHhhcccCCCCCCCCCCC-CCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEe
Q 037622 176 KEGRFSDFHKLIAGKFDLVERPVIRQ-QDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAV 254 (560)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (560)
....+.++..............+ +++++|+|||||||.||+|+++|.++.+.+..... ...+.+.|+++.+
T Consensus 156 ---~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~d~~~~~ 227 (549)
T 3g7s_A 156 ---EVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAV-----ATGLSHMDTIVGC 227 (549)
T ss_dssp ---SSSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHH-----HHCCCTTCEEECC
T ss_pred ---CCcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHH-----HcCCCCCCEEEEe
Confidence 22345555444333323333344 89999999999999999999999999998887766 4678899999999
Q ss_pred cChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhcc-CCCCCCccceeecccC
Q 037622 255 LPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGL-CGNSLKSLKQVSSGAA 333 (560)
Q Consensus 255 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~l~~lr~~~~~g~ 333 (560)
+|++|.+++. .++.++..|+++++.+.+++..+++.++++++|+++++|+++..|++..... ...+++++|.+++||+
T Consensus 228 ~p~~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~ 306 (549)
T 3g7s_A 228 MPMFHSAEFG-LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAW 306 (549)
T ss_dssp SCTTSHHHHH-HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESS
T ss_pred CcHHHHHHHH-HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCc
Confidence 9999999986 4888999999999999999999999999999999999999999998763222 2257889999999999
Q ss_pred CCCHHHHHHHHHh----C--CCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcce
Q 037622 334 PANSKIIEDFVGA----F--PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGE 407 (560)
Q Consensus 334 ~~~~~~~~~~~~~----~--~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Ge 407 (560)
++++++.+++.+. + |++++++.||+||++.+++...... ....+++|+|+|+++++|+|++++++++.|+.||
T Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GE 385 (549)
T 3g7s_A 307 PVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKVISLEDGRELGVGESGE 385 (549)
T ss_dssp CCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEEECSSSCCEECTTCCEE
T ss_pred cCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc-cCcCCCccccCCCCEEEEEeCCCCcCCCCCCceE
Confidence 9999999999987 5 2389999999999998877654322 2467889999999999999988999999999999
Q ss_pred EEEecccchhhhcCCchhhhhccC--CCC--ceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcc
Q 037622 408 LWLRGPGTMKEYINNADATMSTID--KEG--WLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEIL 483 (560)
Q Consensus 408 l~v~~~~~~~gy~~~~~~~~~~~~--~~~--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~ 483 (560)
|+|+||+++.||+++|+.|.+.|. .+| ||+|||+|++|+||.++++||.||+||++|++|+|.|||++|.++|+|.
T Consensus 386 l~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~ 465 (549)
T 3g7s_A 386 IVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVM 465 (549)
T ss_dssp EEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEE
T ss_pred EEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCee
Confidence 999999999999999999998873 566 9999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcccCCCCCceEEEEEEecCC--CCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 484 DVAVTGAMDKVLGEIPVAFVVRRDG--STLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 484 ~~~v~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+++|++.+++..++.++++|++.++ ...+.++++++|+++|+.|++|+.++++++||+|++|||+|++|++...++
T Consensus 466 ~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 466 DVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp EEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC-------------------
T ss_pred eEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhcc
Confidence 9999999999999999999998876 567889999999999999999999999999999999999999999987653
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-81 Score=661.55 Aligned_cols=494 Identities=28% Similarity=0.406 Sum_probs=425.4
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.++|.++++ ++++|++++ ++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++
T Consensus 25 ~tl~~~l~~~a~~~p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 25 ETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHHCCCCEEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 689999888764 679999987 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccch--------HHhhh-cCC-CCEEEecCCCcccccCCCcccHHHhhcc
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENV--------DKLRS-WGT-TPVVAVPENLVNDFKEGRFSDFHKLIAG 189 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~--------~~~~~-~~~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 189 (560)
++|++|.++.+++.++++.+++ +++++++... ..+.. ... ..++..++.. .+.++...
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 169 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEA--AAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE----------EFLPLEDL 169 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTC--SEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT----------TSEEGGGC
T ss_pred EecCCCCCCHHHHHHHHHhCCC--CEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc----------chhhhhhc
Confidence 9999999999999999999999 8888876531 11211 111 2233322210 11112111
Q ss_pred cCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHH-HHH
Q 037622 190 KFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSL-FAL 268 (560)
Q Consensus 190 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~ 268 (560)
...........++++++|+|||||||.||+|+++|+++.+.+..... ...++++|++++.+|++|.+++.. .++
T Consensus 170 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~-----~~~~~~~d~~l~~~p~~h~~~~~~~~~~ 244 (539)
T 1mdb_A 170 HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE-----VCWLDHSTVYLAALPMAHNYPLSSPGVL 244 (539)
T ss_dssp CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH-----HHTCCTTCEEEECSCTTSHHHHHSSHHH
T ss_pred cccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH-----hhCCCCCCEEEEeecccccchhhHHHHH
Confidence 11111223456789999999999999999999999999988877665 456889999999999999999865 688
Q ss_pred HHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCC
Q 037622 269 GLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP 348 (560)
Q Consensus 269 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~ 348 (560)
.++..|+++++.+.+++..+++.++++++|++.++|+++..+++. ......+++++|.+++||+++++++.+++.+.+
T Consensus 245 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~- 322 (539)
T 1mdb_A 245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDA-ASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF- 322 (539)
T ss_dssp HHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHH-HHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-
T ss_pred HHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhC-ccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-
Confidence 999999999999999999999999999999999999999999876 344556789999999999999999999999998
Q ss_pred CCeeecccchhhcccccccCCCCCCCCcccccccccCC-eEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhh
Q 037622 349 HVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPN-IQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATM 427 (560)
Q Consensus 349 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~-~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~ 427 (560)
++++++.||+||++..++. .........+++|+|+++ .+++|+| +++++++.|+.|||+|+||+++.||+++|+.|.
T Consensus 323 ~~~~~~~YG~TE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~ 400 (539)
T 1mdb_A 323 GCTLQQVFGMAEGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNA 400 (539)
T ss_dssp CSEEEEEEECTTSCEEECC-TTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHH
T ss_pred CCcEEEEEcCCCCcccccC-CCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhh
Confidence 8999999999996644332 222112345789999975 5899999 678999999999999999999999999999999
Q ss_pred hccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecC
Q 037622 428 STIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD 507 (560)
Q Consensus 428 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 507 (560)
..|..+|||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.++++|++..
T Consensus 401 ~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~ 480 (539)
T 1mdb_A 401 ASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD 480 (539)
T ss_dssp HHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS
T ss_pred hhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC
Confidence 99988999999999999999999999999999999999999999999999999999999999999988999999999874
Q ss_pred CCCCCHHHHHHHHHhc-cCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhccC
Q 037622 508 GSTLTEAAVIDYLAQR-VAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 508 ~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~ 560 (560)
...+.++++++++++ |+.|++|+.|+++++||+|++||++|++|++.+.++|
T Consensus 481 -~~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 533 (539)
T 1mdb_A 481 -EAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533 (539)
T ss_dssp -SCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHH
Confidence 457789999999998 9999999999999999999999999999999987653
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-81 Score=655.47 Aligned_cols=483 Identities=26% Similarity=0.401 Sum_probs=419.8
Q ss_pred CCceEEE--ECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHH
Q 037622 54 NGRTALV--DSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSE 131 (560)
Q Consensus 54 ~~~~a~~--~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 131 (560)
++++|+. .. .++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++++|++|.++.++
T Consensus 14 p~~~a~~~~~~-~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~ 91 (503)
T 4fuq_A 14 DDPHKLAIETA-AGDKISYAELVARAGRVANVLVA-RGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHE 91 (503)
T ss_dssp SCTTSEEEEET-TCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTCCHHH
T ss_pred CCCceEEEecC-CCcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCCCHHH
Confidence 4444443 33 37899999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEEeeccchHHhhhcC---CCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEE
Q 037622 132 IKKQVTLCKTKISLAFTIYENVDKLRSWG---TTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAIL 208 (560)
Q Consensus 132 l~~~l~~~~~~~~~v~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 208 (560)
+.++++.+++ ++++++......+.... ...+..+.... ...+.................++++++|+
T Consensus 92 l~~il~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~a~i~ 161 (503)
T 4fuq_A 92 LDYFITDAEP--KIVVCDPSKRDGIAAIAAKVGATVETLGPDG--------RGSLTDAAAGASEAFATIDRGADDLAAIL 161 (503)
T ss_dssp HHHHHHHHCC--SEEEECGGGTTTTHHHHHHHTCEEEECCTTS--------CSHHHHHHHTSCSCCCCCCCCTTSEEEEE
T ss_pred HHHHHHhcCC--cEEEECchhhHHHHHHHhhcCceEEEecCCc--------ccccchhhhcCCCCcCcCCCCCCCeEEEE
Confidence 9999999999 99999876544332211 12233332211 11122222222222333456789999999
Q ss_pred cCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHH
Q 037622 209 YSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEM 288 (560)
Q Consensus 209 ~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~ 288 (560)
|||||||.||+|+++|+++.+.+..... ...++++|++++.+|++|.+|+....+.++..|+++++.+.+++..+
T Consensus 162 ~TSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 236 (503)
T 4fuq_A 162 YTSGTTGRSKGAMLSHDNLASNSLTLVD-----YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKI 236 (503)
T ss_dssp ECC--CCSCCEEEEEHHHHHHHHHHHHH-----HTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHH
T ss_pred ECCCcccCCeEEEEeHHHHHHHHHHHHH-----HhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHH
Confidence 9999999999999999999998887776 56788999999999999999986677889999999999999999999
Q ss_pred HHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccC
Q 037622 289 LKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRG 368 (560)
Q Consensus 289 ~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~ 368 (560)
++.++ ++|+++++|+++..+++. .......++++|.+++||+++++++.+.|.+.+ ++++++.||+||++..++..
T Consensus 237 ~~~i~--~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~ 312 (503)
T 4fuq_A 237 LDLMA--RATVLMGVPTFYTRLLQS-PRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNP 312 (503)
T ss_dssp HHHHT--TCCEEEECHHHHHHHHTC-TTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCCC
T ss_pred HHHHh--hcCEEEEHHHHHHHHHhC-CCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCcccccC
Confidence 99998 899999999999999876 444556788999999999999999999999998 89999999999998775432
Q ss_pred CCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCC
Q 037622 369 FNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDG 448 (560)
Q Consensus 369 ~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g 448 (560)
. ......+++|+|+|+++++|+|++++++++.|+.|||+|+||+++.||+++|+.|.+.|..+|||+|||+|++++||
T Consensus 313 ~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG 390 (503)
T 4fuq_A 313 Y--DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERG 390 (503)
T ss_dssp S--SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTC
T ss_pred C--CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCC
Confidence 2 23446789999999999999998899999999999999999999999999999999999889999999999999999
Q ss_pred cEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCC
Q 037622 449 YLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYK 528 (560)
Q Consensus 449 ~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~ 528 (560)
.++++||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++++|+..++...+.++++++++++|+.|+
T Consensus 391 ~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~ 470 (503)
T 4fuq_A 391 YVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFK 470 (503)
T ss_dssp EEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGG
T ss_pred cEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred CcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 529 KVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 529 ~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+|+.++++++||+|++||++|++|++.+.+.
T Consensus 471 ~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 471 MPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp CCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 9999999999999999999999999998764
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-82 Score=673.24 Aligned_cols=523 Identities=30% Similarity=0.486 Sum_probs=343.1
Q ss_pred CCCCceeccCCCCCCCCCCCCCCCHHHHHhccCC--CCceEE---EECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCC
Q 037622 20 SPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKH--NGRTAL---VDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGD 94 (560)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~---~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd 94 (560)
+...+++.++.+..+++. .|+.+++.++++ ++++|+ +++..++++||+||.++++++|++|.+ +|+++||
T Consensus 2 e~~~~~~~~~~~~~~~~~----~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd 76 (550)
T 3rix_A 2 EDAKNIKKGPAPFYPLED----GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTNH 76 (550)
T ss_dssp -CGGGSEECCCCSSCCCC----SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTC
T ss_pred CcccceeeCCCCCCCccc----CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-hCCCCCC
Confidence 345678888888877776 899999988775 446654 466567899999999999999999999 7999999
Q ss_pred EEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC----C-CCEEEecC
Q 037622 95 AVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG----T-TPVVAVPE 169 (560)
Q Consensus 95 ~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~----~-~~vi~~~~ 169 (560)
+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.+++ ++++++......+.... . ..++.++.
T Consensus 77 ~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (550)
T 3rix_A 77 RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQP--TVVFVSKKGLQKILNVQKKLPIIQKIIIMDS 154 (550)
T ss_dssp EEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCC--SEEEECGGGHHHHHHHHHHCTTCCEEEETTC
T ss_pred EEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCC--eEEEEcHHHHHHHHHHHhhCCCcceEEEEcC
Confidence 99999999999999999999999999999999999999999999999 99999988766554321 1 23444333
Q ss_pred CCcccccCCCcccHHHhhcccCC------CC-CCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhccc
Q 037622 170 NLVNDFKEGRFSDFHKLIAGKFD------LV-ERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQY 242 (560)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~ 242 (560)
.. .......+.++...... .. ......++++++|+|||||||.||+|+++|+++...+........ .
T Consensus 155 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~--~ 228 (550)
T 3rix_A 155 KT----DYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--G 228 (550)
T ss_dssp SS----CBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT--S
T ss_pred Cc----cccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhc--c
Confidence 21 12233344444332211 11 112224578999999999999999999999999887765543110 1
Q ss_pred ccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCC
Q 037622 243 EYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSL 322 (560)
Q Consensus 243 ~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l 322 (560)
..+.+++++++.+|++|.+++. ..+.++..|+++++.+.+++..+++.++++++|+++++|+++..|++. ......++
T Consensus 229 ~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~l 306 (550)
T 3rix_A 229 NQIIPDTAILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS-TLIDKYDL 306 (550)
T ss_dssp CCCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHC-CGGGGSCC
T ss_pred ccCCCCcEEEEechHHHHHHHH-HHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC-ccccccCc
Confidence 4577899999999999999985 677889999999999999999999999999999999999999999876 44455678
Q ss_pred CccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCC
Q 037622 323 KSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPP 402 (560)
Q Consensus 323 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~ 402 (560)
+++|.+++||+++++++.+++.+.|+...+++.||+||++.+++..... ....+++|+|+|+++++|+|++++++++.
T Consensus 307 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~ 384 (550)
T 3rix_A 307 SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGV 384 (550)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCT
T ss_pred ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCC
Confidence 9999999999999999999999999545699999999999877765433 34678999999999999999888999999
Q ss_pred CCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCc
Q 037622 403 GSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEI 482 (560)
Q Consensus 403 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v 482 (560)
|+.|||+|+|++++.||+++|+.|...|+.+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|+|
T Consensus 385 g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V 464 (550)
T 3rix_A 385 NQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNI 464 (550)
T ss_dssp TCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----------------------------
T ss_pred CCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCc
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcc-eEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 483 LDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVR-RVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 483 ~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
.+++|++.+++..++.++++|+..++...+.+++++++++++++++.|. .++++++||+|++||++|++|++.+.++
T Consensus 465 ~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 542 (550)
T 3rix_A 465 FDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKA 542 (550)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred ceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhh
Confidence 9999999999999999999999988877888999999999999887665 5999999999999999999999998653
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-81 Score=660.15 Aligned_cols=496 Identities=27% Similarity=0.430 Sum_probs=428.7
Q ss_pred CCCCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHh
Q 037622 39 DSLLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYL 116 (560)
Q Consensus 39 ~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~ 116 (560)
+...|+.+++.++++ ++++|+++...+.++||+||.++++++|.+|.+ +|+++||+|+|+++|++++++++|||+++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 91 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGAAKL 91 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHH-cCCCCcCEEEEEcCCCHHHHHHHHHHHHh
Confidence 345899999988774 679999987434599999999999999999999 79999999999999999999999999999
Q ss_pred CCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC-----CCEEEecCCCcccccCCCcccHHHhhcccC
Q 037622 117 GAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-----TPVVAVPENLVNDFKEGRFSDFHKLIAGKF 191 (560)
Q Consensus 117 G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (560)
|++++|++|.++.+++.++++.+++ ++++++......+..... ..++.... ...+.+......
T Consensus 92 G~~~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 159 (517)
T 3r44_A 92 GAVAVPINTRLAAPEVSFILSDSGS--KVVIYGAPSAPVIDAIRAQADPPGTVTDWIG----------ADSLAERLRSAA 159 (517)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTC--SEEEECGGGHHHHHHHHHSSSCCTTCCEEEE----------HHHHHHHHHHCC
T ss_pred CcEEEecCcccCHHHHHHHHHhcCc--eEEEECCchHHHHHHHHhccCCccEEEEccC----------cccHHHHhhccC
Confidence 9999999999999999999999999 999998876655433211 11111110 112333333333
Q ss_pred CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHh
Q 037622 192 DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLL 271 (560)
Q Consensus 192 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l 271 (560)
.........++++++|+|||||||.||+|+++|+++.+.+..... ...+.++|+++..+|++|..++...++..+
T Consensus 160 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~ 234 (517)
T 3r44_A 160 ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAS-----TIDVRYRDRLLLPLPMFHVAALTTVIFSAM 234 (517)
T ss_dssp CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHH-----HSCCCTTCEEEECSCTTSHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHH-----hcCCCCCCEEEEeCchHHHHHHHHHHHHHh
Confidence 333344567899999999999999999999999999998887766 467889999999999999999964455444
Q ss_pred hCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCe
Q 037622 272 SLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVD 351 (560)
Q Consensus 272 ~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~ 351 (560)
.|+++++.+.+++..+++.++++++|++.++|+++..|.+. ......+++++|.+++||+++++++.+.+.+. +++
T Consensus 235 -~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~ 310 (517)
T 3r44_A 235 -RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQV-PEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIE 310 (517)
T ss_dssp -HTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHS-HHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCE
T ss_pred -cCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhC-cccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCc
Confidence 99999999999999999999999999999999999999876 44445678899999999999999999999987 899
Q ss_pred eecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccC
Q 037622 352 FIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID 431 (560)
Q Consensus 352 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~ 431 (560)
+++.||+||++..++...........+++|+|+++++++++| +++.+++.| .|||+|+|++++.||+++|+.|...|
T Consensus 311 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f- 387 (517)
T 3r44_A 311 VVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF- 387 (517)
T ss_dssp EEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-
T ss_pred EEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-
Confidence 999999999998776654444345678999999999999999 678888888 89999999999999999999999999
Q ss_pred CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCC
Q 037622 432 KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTL 511 (560)
Q Consensus 432 ~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 511 (560)
.+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.+++++ ..++...
T Consensus 388 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~ 466 (517)
T 3r44_A 388 DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEV 466 (517)
T ss_dssp ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTC
T ss_pred cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCC
Confidence 689999999999999999999999999999999999999999999999999999999999998888888888 5566678
Q ss_pred CHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhccC
Q 037622 512 TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 512 ~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~ 560 (560)
+.++++++|+++|+.|++|+.++++++||+|++||++|++|++.+.+.+
T Consensus 467 ~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 467 SEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp CHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 8899999999999999999999999999999999999999999998764
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-81 Score=673.75 Aligned_cols=548 Identities=24% Similarity=0.325 Sum_probs=444.1
Q ss_pred hhhhhhccCCCCCCCCCCCCCCceeccC-------CCCCCCCCCCCCCCHHHHHhccCC--CCceEEEEC----CCCcee
Q 037622 2 EKFLQTFSSERINTSQWYSPETGIYHSK-------HPSVNLPANDSLLDVDSFIFSHKH--NGRTALVDS----LSGYSI 68 (560)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~----~~~~~~ 68 (560)
|+||.+.+... ..|.++.+.++... .+...|+.....-++++++.++++ ++++|++.. ..++++
T Consensus 38 ~~fw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~ 114 (663)
T 1ry2_A 38 AKFFGSKATQF---LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSI 114 (663)
T ss_dssp HHHHHHHHHHH---CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEE
T ss_pred HHHHHHHHhhc---CeeecCCceeecCccccccCCCCCCCcCCCCCccHHHHHHHHHhccCCCceEEEEEcCCCCceEEE
Confidence 56887776421 57888888877544 222567762223345566656544 679999962 235799
Q ss_pred cHHHHHHHHHHHHHHHH-HhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEE
Q 037622 69 SYPQLFPLVQSVASGLR-HHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAF 147 (560)
Q Consensus 69 Ty~el~~~v~~la~~L~-~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~ 147 (560)
||+||.++++++|++|. + +|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.+++ ++++
T Consensus 115 TY~eL~~~v~~lA~~L~~~-~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~--~~li 191 (663)
T 1ry2_A 115 TYKELLEEVCQVAQVLTYS-MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDS--KVVI 191 (663)
T ss_dssp EHHHHHHHHHHHHHHHHHT-SCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTC--SEEE
T ss_pred EHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCC--eEEE
Confidence 99999999999999998 7 899999999999999999999999999999999999999999999999999999 8899
Q ss_pred eeccchH---------Hhhhc----CC-CCEEEecCCCc--ccccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCC
Q 037622 148 TIYENVD---------KLRSW----GT-TPVVAVPENLV--NDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSS 211 (560)
Q Consensus 148 ~~~~~~~---------~~~~~----~~-~~vi~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 211 (560)
+++.... .+.+. .. ..+++++.... ..........+.++..............++++++|+|||
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTS 271 (663)
T 1ry2_A 192 TTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTS 271 (663)
T ss_dssp EESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEEC
T ss_pred EccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccccHHHHHhhcCCCCCccccCCCCceEEEecc
Confidence 8776421 11111 11 23455443210 011112234466655543332333456789999999999
Q ss_pred CCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC----cCHHH
Q 037622 212 GTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR----FEASE 287 (560)
Q Consensus 212 GTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~ 287 (560)
||||.||||+++|.+++......... .+.+.++|++++..|++|+.+..+.++.+|..|+++++.+. +++..
T Consensus 272 GTTG~PKgV~~sh~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~ 347 (663)
T 1ry2_A 272 GSTGAPKGVQHSTAGYLLGALLTMRY----TFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSR 347 (663)
T ss_dssp CSSSSCEEEEECSHHHHHHHHHHHHH----HSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTH
T ss_pred CCCCCCceEEEchhHHHHHHHHHHHH----hcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHH
Confidence 99999999999999988665433221 46788999999999999999987788899999999999874 57899
Q ss_pred HHHHHHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCC--CCeeecccchhhcccc
Q 037622 288 MLKVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP--HVDFIQGYGMTESTAV 364 (560)
Q Consensus 288 ~~~~l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~--~~~i~~~YG~tE~~~~ 364 (560)
+++.++++++|+++++|++++.|.+.... ....++++||.+++|||++++++++++.+.++ ++++++.||+||++..
T Consensus 348 ~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~ 427 (663)
T 1ry2_A 348 YWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSH 427 (663)
T ss_dssp HHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSC
T ss_pred HHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCe
Confidence 99999999999999999999999865221 23457899999999999999999999999883 2899999999999976
Q ss_pred cccCCC-CCCCCcccccccccCCeEEEEEeCCCCccCCC-CCcceEEEec--ccchhhhcCCchhhhhccC--CCCceec
Q 037622 365 GTRGFN-TKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPP-GSTGELWLRG--PGTMKEYINNADATMSTID--KEGWLHT 438 (560)
Q Consensus 365 ~~~~~~-~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~-g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~~~~~T 438 (560)
++.... .....+++++|+|+||++++|+|++++++++. |+.|||+|+| |+++.|||++|+.+.+.+. .+|||+|
T Consensus 428 ~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~T 507 (663)
T 1ry2_A 428 LVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFT 507 (663)
T ss_dssp SEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEE
T ss_pred eeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEc
Confidence 665433 22345678999999999999999658999988 9999999999 5899999999999887763 3789999
Q ss_pred CceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCC---C----
Q 037622 439 GDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGST---L---- 511 (560)
Q Consensus 439 GD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~---- 511 (560)
||+|++|+||+++++||+||+||++|++|++.|||++|.++|.|.+++|++.+++..|+.++++|++.++.. .
T Consensus 508 GDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~ 587 (663)
T 1ry2_A 508 GDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDE 587 (663)
T ss_dssp EEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------
T ss_pred CCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchh
Confidence 999999999999999999999999999999999999999999999999999999888999999999876643 2
Q ss_pred ---CHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 512 ---TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 512 ---~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
..++|+++|+++|++|++|+.|+++++||+|++|||+|++|++.+.++
T Consensus 588 ~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 588 LQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 257899999999999999999999999999999999999999977553
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-80 Score=648.59 Aligned_cols=484 Identities=25% Similarity=0.352 Sum_probs=417.2
Q ss_pred CCHHHHHhccC--CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHK--HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~--~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.++|.+++ .++++|+++...++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 80 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHRLGAV 80 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHHTCE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcE
Confidence 57888888766 4679999986556899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEe--eccchHHh-hhcCCCCEEEecCCCcccccCCCcccHHHhhccc-----C
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFT--IYENVDKL-RSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGK-----F 191 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~--~~~~~~~~-~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 191 (560)
++|++|.++.+++.++++.+++ +++++ +......+ .......++.++ ++.... .
T Consensus 81 ~vpl~~~~~~~~l~~~l~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~ 142 (504)
T 1t5h_X 81 PALLNPRLKSAELAELIKRGEM--TAAVIAVGRQVADAIFQSGSGARIIFLG----------------DLVRDGEPYSYG 142 (504)
T ss_dssp EEEECTTSCHHHHHHHHHHTTC--SEEEECC--CHHHHHHHHCCCCEEEEGG----------------GTEETTEECCCS
T ss_pred EEecCCccChHHHHHHHhhcCC--cEEEEecchhhhhhhhhccccceeEEec----------------chhhcCcccccC
Confidence 9999999999999999999999 88888 66554444 222212222221 111110 1
Q ss_pred CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccC--CCCcEEEEecChhhHHhHHHHHHH
Q 037622 192 DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYL--SSEAVFLAVLPMFHIYGLSLFALG 269 (560)
Q Consensus 192 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~ 269 (560)
.........++++++|+|||||||.||+|+++|+++.+.+..... ..++ .+.+++++.+|++|.+++...++.
T Consensus 143 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~ 217 (504)
T 1t5h_X 143 PPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST-----QVGLRHGRHNVVLGLMPLYHVVGFFAVLVA 217 (504)
T ss_dssp CCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH-----TTCCCSSTTCEEEECSCTTSHHHHTTTHHH
T ss_pred CccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH-----hhCCCCCCCceEEeecchhhcchHHHHHHH
Confidence 111113456789999999999999999999999999988777655 3455 788999999999999998667889
Q ss_pred HhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCC
Q 037622 270 LLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP 348 (560)
Q Consensus 270 ~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~ 348 (560)
++..|+++++.+.+++..+++.++++++|+++++|+++..|++.... ....+++++|.+++||+++++++.+++.+.+
T Consensus 218 ~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~- 296 (504)
T 1t5h_X 218 ALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL- 296 (504)
T ss_dssp HHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-
T ss_pred HHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-
Confidence 99999999999999999999999999999999999999999876312 2445688999999999999999999999999
Q ss_pred CCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCC---ccCCCCCcceEEEe-cccchhhhcCCch
Q 037622 349 HVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNG---CFLPPGSTGELWLR-GPGTMKEYINNAD 424 (560)
Q Consensus 349 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~---~~~~~g~~Gel~v~-~~~~~~gy~~~~~ 424 (560)
+.++++.||+||++...... ..+.+++|.|.++++++++|. ++ ++++.|+.|||+|+ |+.++.||+++|+
T Consensus 297 ~~~~~~~YG~TE~~~~~~~~-----~~~~~~~g~p~~~~~~~i~~~-~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~ 370 (504)
T 1t5h_X 297 PGEKVNIYGTTEAMNSLYMR-----QPKTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVGYLNQPQ 370 (504)
T ss_dssp CSEEEEEEEETTTEEEEEEE-----SCSSSSEEBCCTTCCEEEECT-TSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHH
T ss_pred Ccceeeeecccccccccccc-----CCCCCccccCCCCCceeEEec-cCCCCCcCCCCCcceEEEeCCceeeceecCCch
Confidence 78999999999994322211 235678999999999999994 45 89999999999999 8999999999999
Q ss_pred hhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEE
Q 037622 425 ATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVV 504 (560)
Q Consensus 425 ~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 504 (560)
.|.+.| .+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.++++|+
T Consensus 371 ~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv 449 (504)
T 1t5h_X 371 ATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVV 449 (504)
T ss_dssp HHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEE
T ss_pred hhhhhh-cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEE
Confidence 999999 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHh-ccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHh
Q 037622 505 RRDGSTLTEAAVIDYLAQ-RVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLT 557 (560)
Q Consensus 505 ~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~ 557 (560)
+.++...+.+++++++++ +|+.|++|+.++++++||+|++|||+|++|++.+.
T Consensus 450 ~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 450 PRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp ECTTCCCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred ecCCcCcCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 988777888999999999 99999999999999999999999999999999875
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-80 Score=653.24 Aligned_cols=498 Identities=26% Similarity=0.375 Sum_probs=406.0
Q ss_pred CCHH-HHHhccC--CCCceEEEEC---CCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 037622 42 LDVD-SFIFSHK--HNGRTALVDS---LSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115 (560)
Q Consensus 42 ~~~~-~~~~~~~--~~~~~a~~~~---~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 115 (560)
.|+. ++|.+++ .++++|++.. ..++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||++
T Consensus 55 ~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~-~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~ 133 (580)
T 3etc_A 55 FNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVK-HGIGKGDYVMLTLKSRYDFWYCMLGLHK 133 (580)
T ss_dssp CCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECTTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence 5555 7776665 4679999852 124699999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccch--HHhhhc----CC--CCEEEecCCCcccccCCCcccHHHhh
Q 037622 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENV--DKLRSW----GT--TPVVAVPENLVNDFKEGRFSDFHKLI 187 (560)
Q Consensus 116 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~--~~~~~~----~~--~~vi~~~~~~~~~~~~~~~~~~~~~~ 187 (560)
+|++++|+++.++.+++.++++.+++ ++++++.+.. ..+... .. ..++.++... ...+..+.+.+
T Consensus 134 ~Gav~vpl~~~~~~~~l~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 206 (580)
T 3etc_A 134 LGAIAVPATHMLKTRDIVYRIEKAGL--KMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV-----LEGWIDFRKEL 206 (580)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTC--CEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSC-----CTTCEEHHHHH
T ss_pred CCEEEEeCCccCCHHHHHHHHHhcCC--CEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCcc-----ccccccHHHHH
Confidence 99999999999999999999999999 8888877643 322221 11 2344443321 23445565555
Q ss_pred cccCCCCCC----CCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhH
Q 037622 188 AGKFDLVER----PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGL 263 (560)
Q Consensus 188 ~~~~~~~~~----~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~ 263 (560)
......... ....++|+++|+|||||||.||+|.++|.++...+..... ...+.++++++...|+.|..+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 281 (580)
T 3etc_A 207 EESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKY-----WQNVEDDGLHYTVADSGWGKCV 281 (580)
T ss_dssp HHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHT-----TSCCCTTCEEEECCCTTSTHHH
T ss_pred hhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHH-----hhCCCCCceEEEeCChHHHHHH
Confidence 443332221 2457899999999999999999999999988876655443 4678889999999999999888
Q ss_pred HHHHHHHhhCCCEEEEe--CCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHH
Q 037622 264 SLFALGLLSLGPSVVVM--RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIE 341 (560)
Q Consensus 264 ~~~~~~~l~~G~~~v~~--~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~ 341 (560)
...++.++..|+++++. ..+++..+++.++++++|+++++|++++.|.+. .....++++||.+++|||++++++.+
T Consensus 282 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~--~~~~~~l~~lr~i~~gGe~l~~~~~~ 359 (580)
T 3etc_A 282 WGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE--DLSHYNFSTLKYAVVAGEPLNPEVFN 359 (580)
T ss_dssp HHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS--CC---CCTTCCEEEECSSCCCHHHHH
T ss_pred HHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc--ccccCCCccceEEEEccCCCCHHHHH
Confidence 66688899999999987 468999999999999999999999999999864 33456789999999999999999999
Q ss_pred HHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEec-----ccch
Q 037622 342 DFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG-----PGTM 416 (560)
Q Consensus 342 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~-----~~~~ 416 (560)
+|.+.+ ++++++.||+||++.+++..... ..+++++|+|+|+++++|+| +++++++.|+.|||+|+| ++++
T Consensus 360 ~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~ 435 (580)
T 3etc_A 360 RFLEFT-GIKLMEGFGQTETVVTIATFPWM--EPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLF 435 (580)
T ss_dssp HHHHHH-SCCCEEEECCTTSSCCEECCTTS--CCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCC
T ss_pred HHHHHh-CCeEecccccccccceeecCCCC--CCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeee
Confidence 999988 89999999999998776654322 34678999999999999999 579999999999999997 7899
Q ss_pred hhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCC
Q 037622 417 KEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLG 496 (560)
Q Consensus 417 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~ 496 (560)
.||+++|+.|.+.| .+|||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.++|+|.+++|++.+++..|
T Consensus 436 ~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g 514 (580)
T 3etc_A 436 VHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRG 514 (580)
T ss_dssp CEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTE
T ss_pred ccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCC
Confidence 99999999999999 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCCCCC---HHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 497 EIPVAFVVRRDGSTLT---EAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 497 ~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+.++++|++.++.... .++|+++++++|++|++|+.++++++||+|++|||+|++||+++.++
T Consensus 515 ~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~q 580 (580)
T 3etc_A 515 QVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQSQ 580 (580)
T ss_dssp EEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC---------------------
T ss_pred cEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhcC
Confidence 9999999998775443 46899999999999999999999999999999999999999988764
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-80 Score=695.48 Aligned_cols=528 Identities=37% Similarity=0.608 Sum_probs=358.2
Q ss_pred CceeccCCCCCCCCCCCCCCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEc
Q 037622 23 TGIYHSKHPSVNLPANDSLLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLL 100 (560)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~ 100 (560)
..+|.++.+...+|. ..|++++|.++++ ++++|+++..+++++||+||.++++++|++|.+ +|+++||+|+|++
T Consensus 45 ~~~~~~~~~~~~~p~---~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~ 120 (979)
T 3tsy_A 45 DVIFRSKLPDIYIPN---HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHK-LGVNQNDVVMLLL 120 (979)
T ss_dssp CCCBCCSSCCCCCCT---TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEEC
T ss_pred CceeecCCCCCCCCC---CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCcCEEEEEe
Confidence 446666666555542 3799999999886 569999998778999999999999999999999 8999999999999
Q ss_pred CCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhc---CCCCEEEecCCCcccccC
Q 037622 101 PNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSW---GTTPVVAVPENLVNDFKE 177 (560)
Q Consensus 101 ~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~~~~~~~~~~~~ 177 (560)
+|++++++++|||+++|++++|++|.++.+++.++++.+++ ++++++......+... ....++.++..... ...
T Consensus 121 ~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 197 (979)
T 3tsy_A 121 PNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNT--KLIITEARYVDKIKPLQNDDGVVIVCIDDNESV-PIP 197 (979)
T ss_dssp SSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTE--EEEEECSTTTTTSHHHHHTSCCEEEECCCCTTS-CCC
T ss_pred CCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCC--eEEEEChHHHHHHHHHhhcCCceEEEeCCcccc-cCC
Confidence 99999999999999999999999999999999999999999 9999988765544332 22344444432110 011
Q ss_pred CCcccHHHhhcccCC---CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEe
Q 037622 178 GRFSDFHKLIAGKFD---LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAV 254 (560)
Q Consensus 178 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (560)
.....+.++...... ........++++++|+|||||||.||+|+++|+++...+........ ....+.++|++++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~~~~~d~~l~~ 276 (979)
T 3tsy_A 198 EGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN-PNLYFHSDDVILCV 276 (979)
T ss_dssp TTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSS-CSSCCCSSCEEEEC
T ss_pred cccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhc-ccccCCCCCEEEEE
Confidence 222334444332221 22334567899999999999999999999999999988766543111 02457789999999
Q ss_pred cChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCC
Q 037622 255 LPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAP 334 (560)
Q Consensus 255 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~ 334 (560)
+|++|.+++...++.++..|+++++.+++++..+++.++++++|++.++|+++..|++. ......+++++|.+++||++
T Consensus 277 ~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~l~~lr~~~~gg~~ 355 (979)
T 3tsy_A 277 LPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS-SETEKYDLSSIRVVKSGAAP 355 (979)
T ss_dssp SCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHC-GGGGTSCCTTCCEEEESSCC
T ss_pred CchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhC-ccccCCCccceEEEEEcCCC
Confidence 99999999977788999999999999999999999999999999999999999999886 45556778999999999999
Q ss_pred CCHHHHHHHHHhCCCCeeecccchhhcccccccCCC---CCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEe
Q 037622 335 ANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFN---TKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLR 411 (560)
Q Consensus 335 ~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~---~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~ 411 (560)
+++++.+++.+.||++++++.||+||++.+++.... .......+++|+|+|+++++|+|++++++++.|+.|||+|+
T Consensus 356 l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~ 435 (979)
T 3tsy_A 356 LGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIR 435 (979)
T ss_dssp CCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEE
T ss_pred CCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEE
Confidence 999999999999999999999999999977654321 22234678899999999999999888999999999999999
Q ss_pred cccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEccc
Q 037622 412 GPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAM 491 (560)
Q Consensus 412 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~ 491 (560)
|++++.||+++|+.|.+.|+.+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.++|+|.+++|++.+
T Consensus 436 g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~ 515 (979)
T 3tsy_A 436 GHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMK 515 (979)
T ss_dssp STTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC---------------------------------
T ss_pred CCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 492 DKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 492 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
++..++.++++|+..++...+.++++++++++|+.|++|+.++++++||+|++||++|++|++.+.+.
T Consensus 516 ~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 583 (979)
T 3tsy_A 516 EEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANG 583 (979)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccCCCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhh
Confidence 99889999999998887777888999999999999999999999999999999999999999988764
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-80 Score=653.81 Aligned_cols=495 Identities=24% Similarity=0.334 Sum_probs=332.3
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.++|.++++ ++++|++++ ++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++
T Consensus 30 ~tl~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav 106 (544)
T 3o83_A 30 QPLTRILTVGVQSHPHSLAIICG--ERQLSYIELDRLSTNLATRLAE-KGLGKGDTALVQLPNVAEFYIVFFALLKAGVV 106 (544)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHhCCCceEEEcC--CCceeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence 688888887764 679999998 8999999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccch--------HHhhhcC-C-CCEEEecCCCcccccCCCcccHHHhhcc
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENV--------DKLRSWG-T-TPVVAVPENLVNDFKEGRFSDFHKLIAG 189 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~--------~~~~~~~-~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 189 (560)
++|+++.++.+++.++++.+++ ++++++.... ..+.... . ..++..+... ....+.+....
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 177 (544)
T 3o83_A 107 VLNALYSHRQYELNAFIKQIQP--KLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQA-------TDFGLLDWIET 177 (544)
T ss_dssp EEECCTTCCHHHHHHHHHHHCC--SEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCT-------TSEEHHHHHHS
T ss_pred EecCCCCCCHHHHHHHHHhcCe--eEEEEccccccccHHHHHHHHhhcccCcceEEEecCCc-------cccchhhhhhc
Confidence 9999999999999999999999 8888877542 1221111 1 2233333211 11123333322
Q ss_pred cCCC-CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHH-HH
Q 037622 190 KFDL-VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSL-FA 267 (560)
Q Consensus 190 ~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~ 267 (560)
.... .......++++++|+|||||||.||+|+++|.++.+.+..... ...+.++|++++++|++|.+++.. .+
T Consensus 178 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~-----~~~~~~~d~~l~~~p~~h~~~~~~~~~ 252 (544)
T 3o83_A 178 PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE-----ICGLNSNTRLLCALPAPHNFMLSSPGA 252 (544)
T ss_dssp CCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH-----HTTCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred ccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHH-----HhCCCCCCeEEEecCcceEeecchHHH
Confidence 2221 1224456899999999999999999999999999998888776 567889999999999999998864 58
Q ss_pred HHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhC
Q 037622 268 LGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAF 347 (560)
Q Consensus 268 ~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~ 347 (560)
+.++..|+++++.+.+++..+++.++++++|++.++|+++..+++. ......+++++|.+++||+++++++.+++.+.+
T Consensus 253 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (544)
T 3o83_A 253 LGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEK-AAQYKDQIQSLKLLQVGGASFPESLARQVPEVL 331 (544)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHH-HTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH
T ss_pred HHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhc-hhhccccCCcceEEEEcCCCCCHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999999999876 333345678999999999999999999999998
Q ss_pred CCCeeecccchhhcccccccCCCCCCCCccccccccc-CCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhh
Q 037622 348 PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLA-PNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT 426 (560)
Q Consensus 348 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~-p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~ 426 (560)
++++++.||+||++..++... .......+++|+|+ ++++++|+| +++++++.|+.|||+|+||+++.||+++|+.|
T Consensus 332 -~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t 408 (544)
T 3o83_A 332 -NCKLQQVFGMAEGLVNYTRLD-DSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHN 408 (544)
T ss_dssp -CSEEEEEEECTTSCEEECCTT-SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHH
T ss_pred -CCcEEeeeccccccceeecCC-CchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhh
Confidence 899999999999886554322 22223457899996 899999999 78999999999999999999999999999999
Q ss_pred hhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEec
Q 037622 427 MSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRR 506 (560)
Q Consensus 427 ~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 506 (560)
...|+.+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.++++++..
T Consensus 409 ~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~ 488 (544)
T 3o83_A 409 SQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSR 488 (544)
T ss_dssp HHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-------------------------------------------------
T ss_pred hhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeC
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCHHHHHHHHHh-ccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 507 DGSTLTEAAVIDYLAQ-RVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 507 ~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
+ ...+.+++++++++ +|+.|++|+.++++++||+|++||++|++|++.+.+
T Consensus 489 ~-~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 489 N-PELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp -----------------------------------------------------
T ss_pred C-CCCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhh
Confidence 6 35667789999998 799999999999999999999999999999998865
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-78 Score=647.41 Aligned_cols=495 Identities=25% Similarity=0.362 Sum_probs=429.4
Q ss_pred CCHHHHHhccCCCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEe
Q 037622 42 LDVDSFIFSHKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVI 121 (560)
Q Consensus 42 ~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 121 (560)
.|++++|.++++++++|++++ ++++||+||.++++++|++|.+ .|+++||+|+|+++|++++++++|||+++|++++
T Consensus 27 ~~l~~~~~~~a~pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~v 103 (617)
T 3rg2_A 27 LPLTDILTRHAASDSIAVIDG--ERQLSYRELNQAADNLACSLRR-QGIKPGETALVQLGNVAELYITFFALLKLGVAPV 103 (617)
T ss_dssp CCTTHHHHTTTTCCSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEE
T ss_pred CCHHHHHHHhhCCCCeEEecC--CceEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEc
Confidence 789999999999999999998 8999999999999999999999 7999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEeeccch--------HHhh-hcCCCCEEEecCCCcccccCCCcccHHHhhcccCC
Q 037622 122 PMNPLLSVSEIKKQVTLCKTKISLAFTIYENV--------DKLR-SWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFD 192 (560)
Q Consensus 122 ~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~--------~~~~-~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (560)
|+++.++.+++.++++.+++ ++++++.... ..+. .......+...... ....+.+.......
T Consensus 104 pl~~~~~~~~l~~~l~~~~~--~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 174 (617)
T 3rg2_A 104 LALFSHQRSELNAYASQIEP--ALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDS-------GEHNLQDAINHPAE 174 (617)
T ss_dssp EECTTCCHHHHHHHHHHHCC--SEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCC-------STTBHHHHHHSCCS
T ss_pred cCCccccHHHHHHHHhhcCc--eEEEecccccccccHHHHHHHhhcCCccceeeecccc-------cccchhhhhccccc
Confidence 99999999999999999999 8888887543 1111 11222333322211 11223333333333
Q ss_pred CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHH-HHHHHh
Q 037622 193 LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSL-FALGLL 271 (560)
Q Consensus 193 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l 271 (560)
........++++++|+|||||||.||+|+++|+++.+.+..... ...+.+++++++++|++|.+++.. .++.++
T Consensus 175 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~-----~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l 249 (617)
T 3rg2_A 175 DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE-----ICQFTQQTRYLCAIPAAHNYAMSSPGSLGVF 249 (617)
T ss_dssp SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH-----HHTCCTTCEEEECSCTTSHHHHHSSHHHHHH
T ss_pred ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHH-----hcCCCCcceEEEeccchhhhhhhHHHHHHHH
Confidence 33344556899999999999999999999999999998887766 467889999999999999998854 688899
Q ss_pred hCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhcc-CCCCCCccceeecccCCCCHHHHHHHHHhCCCC
Q 037622 272 SLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGL-CGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHV 350 (560)
Q Consensus 272 ~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~ 350 (560)
..|+++++.+..++..+++.++++++|++.++|+++..+++..... ....++++|.+++|||++++++.+++.+.+ ++
T Consensus 250 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~ 328 (617)
T 3rg2_A 250 LAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GC 328 (617)
T ss_dssp HHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CS
T ss_pred HcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CC
Confidence 9999999999899999999999999999999999999998753221 223688999999999999999999999998 89
Q ss_pred eeecccchhhcccccccCCCCCCCCccccccccc-CCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhc
Q 037622 351 DFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLA-PNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMST 429 (560)
Q Consensus 351 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~-p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~ 429 (560)
++++.||+||++..++... ........++|.|+ ++.++.|+| +++++++.|+.|||+|+|++++.||+++|+.|.+.
T Consensus 329 ~~~~~YG~tE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~ 406 (617)
T 3rg2_A 329 QLQQVFGMAEGLVNYTRLD-DSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASA 406 (617)
T ss_dssp EEEEEEEETTEEEEECCTT-SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHH
T ss_pred cEEEEeccCcceeecccCC-CcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhc
Confidence 9999999999986655332 22223356889997 788999999 78999999999999999999999999999999999
Q ss_pred cCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCC
Q 037622 430 IDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS 509 (560)
Q Consensus 430 ~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 509 (560)
|+.++||+|||+|++++||.++++||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++++++..+
T Consensus 407 f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~-- 484 (617)
T 3rg2_A 407 FDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE-- 484 (617)
T ss_dssp BCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--
T ss_pred cCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999888899999999876
Q ss_pred CCCHHHHHHHHHh-ccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 510 TLTEAAVIDYLAQ-RVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 510 ~~~~~~l~~~~~~-~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
..+.+++++++++ .|+.|++|..++++++||+|++||+||++|++.+.+
T Consensus 485 ~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 485 PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp CCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence 4678899999998 699999999999999999999999999999998754
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-80 Score=650.06 Aligned_cols=499 Identities=27% Similarity=0.415 Sum_probs=385.0
Q ss_pred CCHHHHHhccC--CCCceEEEEC--CCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhC
Q 037622 42 LDVDSFIFSHK--HNGRTALVDS--LSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117 (560)
Q Consensus 42 ~~~~~~~~~~~--~~~~~a~~~~--~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G 117 (560)
.|+.++|.+++ .++++|++.. ..++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 96 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAYFAVPGMG 96 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 68888888766 4679999852 235799999999999999999999 899999999999999999999999999999
Q ss_pred CeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC----C-CCEEEecCCCcccccCCCcccHHHhhcccCC
Q 037622 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG----T-TPVVAVPENLVNDFKEGRFSDFHKLIAGKFD 192 (560)
Q Consensus 118 ~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~----~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (560)
++++|++|.++.+++.++++.+++ +++++++.....+.... . ..++.++... ......+.+++.....
T Consensus 97 av~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 169 (541)
T 1v25_A 97 AVLHTANPRLSPKEIAYILNHAED--KVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKA-----PEGYLAYEEALGEEAD 169 (541)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTC--SEEEECGGGHHHHHHHGGGCSSCCEEEESSSCC-----CTTCEEHHHHCCSCCC
T ss_pred cEEEecCcccCHHHHHHHHHhCCC--cEEEEChhHHHHHHHHHhhCCCccEEEEecCCC-----CcccccHHHHhhccCC
Confidence 999999999999999999999999 99999887655543321 1 2234433321 1122345554433222
Q ss_pred CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhh
Q 037622 193 LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLS 272 (560)
Q Consensus 193 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~ 272 (560)
. ....++++++|+|||||||.||+|+++|+++.......... ....++++|++++.+|++|.+++. ..+.++.
T Consensus 170 ~---~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~~~~-~~~~~l~ 242 (541)
T 1v25_A 170 P---VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLV---DGTALSEKDVVLPVVPMFHVNAWC-LPYAATL 242 (541)
T ss_dssp C---CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTST---TTTCCCTTCEEEECSCTTSHHHHT-HHHHHHH
T ss_pred c---ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhc---ccccCCCCCEEEEeccchhhhHHH-HHHHHHh
Confidence 1 34467899999999999999999999999998765542110 135678899999999999999984 6778899
Q ss_pred CCCEEEEeCC-cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCe
Q 037622 273 LGPSVVVMRR-FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVD 351 (560)
Q Consensus 273 ~G~~~v~~~~-~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~ 351 (560)
.|+++++.+. +++..+++.++++++|+++++|+++..|++. ......+++++|.+++||+++++++.+++ +.+ +++
T Consensus 243 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~ 319 (541)
T 1v25_A 243 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY-LESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVE 319 (541)
T ss_dssp HTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHH-HHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCE
T ss_pred cCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhh-hhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCc
Confidence 9999999874 7999999999999999999999999999876 33335578899999999999999999999 666 899
Q ss_pred eecccchhhcccccccCCCCCC---------CCcccccccccCCeEEEEEeCCCCccCCC--CCcceEEEecccchhhhc
Q 037622 352 FIQGYGMTESTAVGTRGFNTKK---------FSKYFSVGLLAPNIQAKVVDWVNGCFLPP--GSTGELWLRGPGTMKEYI 420 (560)
Q Consensus 352 i~~~YG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~p~~~~~v~d~~~~~~~~~--g~~Gel~v~~~~~~~gy~ 420 (560)
+++.||+||++.+++....... ....+++|+|+|+++++|+| +++++++. ++.|||+|+||+++.||+
T Consensus 320 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~ 398 (541)
T 1v25_A 320 VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYY 398 (541)
T ss_dssp EEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCB
T ss_pred eeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhcccc
Confidence 9999999999987765432210 12357899999999999999 57888874 368999999999999999
Q ss_pred CCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEE
Q 037622 421 NNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPV 500 (560)
Q Consensus 421 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 500 (560)
++|+.|.+.|..+|||+|||+|++|+||+++++||+||+||.+|++|+|.|||++|.+||+|.+++|++.+++..++.++
T Consensus 399 ~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~ 478 (541)
T 1v25_A 399 GNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPL 478 (541)
T ss_dssp TCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEE
T ss_pred CChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEE
Confidence 99999999998799999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEEecCCCCCCHHHHHHHHHh-ccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhccC
Q 037622 501 AFVVRRDGSTLTEAAVIDYLAQ-RVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 501 ~~v~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~ 560 (560)
++|++. +...+.+++++++++ +|+.|++|+.++++++||+|++||++|++|++.+.+.+
T Consensus 479 a~vv~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 538 (541)
T 1v25_A 479 AVVVPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYY 538 (541)
T ss_dssp ECC--------------------CCCTTTSCSBC--------------CCTTHHHHSTTSS
T ss_pred EEEEEC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhh
Confidence 999876 445667889999999 89999999999999999999999999999999987653
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-79 Score=639.66 Aligned_cols=488 Identities=20% Similarity=0.263 Sum_probs=416.2
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
+|+.++|.++++ ++++|+++. ++++||+||.++++++|++|.+ .|+++||+|+|+++|++++++++|||+++|++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v 77 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR--DAKITYKQLKEDSDALAHWISS-EYPDDRSPIMVYGHMQPEMIINFLGCVKAGHA 77 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HSTTCCCCEEEEESSCHHHHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHHHCCCceEEEeC--CceEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 467788877764 679999997 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhc--ccCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIA--GKFDLVERP 197 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 197 (560)
++|+++.++.+++.++++.+++ ++++++....... ........ ..+..... .........
T Consensus 78 ~vpl~~~~~~~~l~~il~~~~~--~~~i~~~~~~~~~-----~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 139 (512)
T 3fce_A 78 YIPVDLSIPADRVQRIAENSGA--KLLLSATAVTVTD-----LPVRIVSE-----------DNLKDIFFTHKGNTPNPEH 139 (512)
T ss_dssp EEEEETTSCHHHHHHHHHHSCC--CEEEESSCCCSSC-----CSSEEEET-----------HHHHHHHHHTTTCCCCGGG
T ss_pred EEeeCCCCcHHHHHHHHHhcCC--CEEEecCcccccc-----cccceech-----------hhhhhhcccccccCCCccc
Confidence 9999999999999999999999 8888764321100 11111110 01111111 111112223
Q ss_pred CCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEE
Q 037622 198 VIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSV 277 (560)
Q Consensus 198 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~ 277 (560)
...++++++|+|||||||.||+|+++|.++.+.+..... ...+.++|++++.+|++|..++. .++.++..|+++
T Consensus 140 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~ 213 (512)
T 3fce_A 140 AVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE-----DFNLQTGQVFLNQAPFSFDLSVM-DIYPSLVTGGTL 213 (512)
T ss_dssp SCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH-----HTTCCSSCEEEECSCTTSGGGHH-HHHHHHHTTCEE
T ss_pred cCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH-----hcCCCCCCEEEEeCCccHhHHHH-HHHHHHhCCCEE
Confidence 456799999999999999999999999999998887766 46788999999999999999984 788999999999
Q ss_pred EEeCC---cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeec
Q 037622 278 VVMRR---FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354 (560)
Q Consensus 278 v~~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~ 354 (560)
++.+. +++..+++.++++++|++.++|+++..++.. .......++++|.+++||+++++++.+++.+.|+++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~ 292 (512)
T 3fce_A 214 WAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLME-ASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMN 292 (512)
T ss_dssp EECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTS-TTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhh-ccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEe
Confidence 99886 7899999999999999999999999998876 4445567889999999999999999999999999999999
Q ss_pred ccchhhcccccccCCCCCC---CCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhcc-
Q 037622 355 GYGMTESTAVGTRGFNTKK---FSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI- 430 (560)
Q Consensus 355 ~YG~tE~~~~~~~~~~~~~---~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~- 430 (560)
.||+||++.+++....... .....++|+|+++++++++| +++++++.|+.|||+|+||+++.||+++|+.|.+.|
T Consensus 293 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 371 (512)
T 3fce_A 293 TYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFT 371 (512)
T ss_dssp EECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEE
T ss_pred CcccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccc
Confidence 9999999987664332211 23456899999999999999 789999999999999999999999999999999887
Q ss_pred --CCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCC
Q 037622 431 --DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDG 508 (560)
Q Consensus 431 --~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 508 (560)
++++||+|||+|++ +||+++++||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.+++++++.++
T Consensus 372 ~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~ 450 (512)
T 3fce_A 372 MIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH 450 (512)
T ss_dssp EETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSC
T ss_pred cCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCc
Confidence 45789999999999 899999999999999999999999999999999999999999999988888899999998776
Q ss_pred CCCCH----HHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 509 STLTE----AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 509 ~~~~~----~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
..... ++++++|+++|+.|++|+.++++++||+|++||++|++|++.+.++
T Consensus 451 ~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 451 SFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp CCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-
T ss_pred cccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhc
Confidence 44433 5799999999999999999999999999999999999999998753
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-79 Score=644.75 Aligned_cols=487 Identities=29% Similarity=0.422 Sum_probs=321.8
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.++|.++++ ++++|+++. ++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++
T Consensus 6 ~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 82 (509)
T 3ivr_A 6 FTLADVYRRNAALFPDRTAFMVD--GVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVALIGAI 82 (509)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHCCCceEEEEC--CcEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 799999988875 679999997 8999999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhc----CC-CCEEEecCCCcccccCCCcccHHHhhc-ccCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSW----GT-TPVVAVPENLVNDFKEGRFSDFHKLIA-GKFDL 193 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~----~~-~~vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 193 (560)
++|++|.++.+++.++++.+++ ++++++......+... .. ..++.+++.. ..+.++.. .....
T Consensus 83 ~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 151 (509)
T 3ivr_A 83 LLPVNYRLNADEIAFVLGDGAP--SVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS---------GPFAPFKDLASDTP 151 (509)
T ss_dssp EEECCTTSCHHHHHHHHHHHCE--EEEEECSTTHHHHHHHGGGCSSCCEEEESSCCC---------SSCEEGGGTCCCSC
T ss_pred EEecCCCCCHHHHHHHHHhcCc--eEEEECcchhhhHHhhhcccCCceEEEEcCCCC---------cChhhHhhccCCCC
Confidence 9999999999999999999999 9999988765542221 11 2233333211 11111222 11222
Q ss_pred CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhC
Q 037622 194 VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSL 273 (560)
Q Consensus 194 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~ 273 (560)
.......++++++|+|||||||.||+|+++|+++...+..... ...++++|++++.+|++|.+++...+...+ .
T Consensus 152 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~-~ 225 (509)
T 3ivr_A 152 FSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVD-----AWRLTEADVNLGMLPLFHVTGLGLMLTLQQ-A 225 (509)
T ss_dssp CCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHH-----HTTCCTTCEEEECSCTTSHHHHHHHHHHHH-H
T ss_pred CCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHH-----hhCCCCCcEEEEeCCCcchhHHHHHHHHHH-h
Confidence 3344567899999999999999999999999999998887776 467889999999999999999964444444 4
Q ss_pred CCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeee
Q 037622 274 GPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFI 353 (560)
Q Consensus 274 G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~ 353 (560)
|++.++...+++..+++.++++++|++.++|+++..+++.. ....++++|.++.+|++ ++.+.+.+.+|+++++
T Consensus 226 ~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~---~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~ 299 (509)
T 3ivr_A 226 GGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA---APAQLASLRAVTGLDTP---ETIERFEATCPNATFW 299 (509)
T ss_dssp TCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC---CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEE
T ss_pred CCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc---cccchhhhheecccCCh---HHHHHHHHhcCCCeEE
Confidence 55555555889999999999999999999999999998762 34567899999999987 8889999999999999
Q ss_pred cccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCC
Q 037622 354 QGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKE 433 (560)
Q Consensus 354 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 433 (560)
+.||+||++.+++...... ...++|+|+|+++++|+| +++++++.|+.|||+|+|++++.||+++|+.|...| .+
T Consensus 300 ~~YG~TE~~~~~~~~~~~~---~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~ 374 (509)
T 3ivr_A 300 ATFGQSETSGLSTFAPYRD---RPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RN 374 (509)
T ss_dssp EEEEEGGGTEEEEEEEGGG---STTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GG
T ss_pred cccCccccccccccCcccc---CCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hc
Confidence 9999999998776543322 334599999999999999 569999999999999999999999999999999999 48
Q ss_pred CceecCceEEEccCCcEEEEccc--cceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCC
Q 037622 434 GWLHTGDIAYFDEDGYLYIVDRL--KEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTL 511 (560)
Q Consensus 434 ~~~~TGD~~~~~~~g~l~~~GR~--~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 511 (560)
|||+|||+|++++||+++++||. +|+||++|++|+|.|||++|.++|+|.+++|++.+++..++.+++++++.++...
T Consensus 375 g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~ 454 (509)
T 3ivr_A 375 GWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESI 454 (509)
T ss_dssp GSEEEEEEEEECTTSCEEEEEEC---------------------------------------------------------
T ss_pred CCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCC
Confidence 99999999999999999999999 9999999999999999999999999999999999999889999999998888778
Q ss_pred CHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 512 TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 512 ~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+.++++++++++|+.|++|+.++++++||+|++|||+|++||+++.+.
T Consensus 455 ~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 455 AADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ------------------------------------------------
T ss_pred CHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhc
Confidence 889999999999999999999999999999999999999999998753
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-78 Score=635.92 Aligned_cols=487 Identities=19% Similarity=0.265 Sum_probs=419.2
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
+|+.++|.++++ ++++|+++. ++++||+||.++++++|++|.++.|.++|++|+++++|++++++++|||+++|++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 78 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHP 78 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCE
Confidence 367788877774 679999987 8999999999999999999987458889999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCC-CCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFD-LVERPV 198 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 198 (560)
++|+++.++.+++.++++.+++ +++++++........ . ......+.++...... ......
T Consensus 79 ~vpl~~~~~~~~l~~~l~~~~~--~~li~~~~~~~~~~~---~--------------~~~~~~~~~~~~~~~~~~~~~~~ 139 (511)
T 3e7w_A 79 YIPVDLSIPSERIAKIIESSGA--ELLIHAAGLSIDAVG---Q--------------QIQTVSAEELLENEGGSVSQDQW 139 (511)
T ss_dssp EEEEETTSCHHHHHHHHHHHTC--CEEEESSSCCTTCCC---C--------------SSCEEEHHHHHTSCSCCCCGGGS
T ss_pred EEecCCCChHHHHHHHHHhCCC--CEEEecccccchhcc---c--------------ccceecHhhhhccccCCcccccc
Confidence 9999999999999999999999 888876543111000 0 0111223333332211 112234
Q ss_pred CCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEE
Q 037622 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278 (560)
Q Consensus 199 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 278 (560)
..++++++|+|||||||.||+|+++|.++.+.+..... ...+..+|++++.+|++|..++. .++.++..|++++
T Consensus 140 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~ 213 (511)
T 3e7w_A 140 VKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA-----DFPVSGGKIFLNQAPFSFDLSVM-DLYPCLQSGGTLH 213 (511)
T ss_dssp CCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH-----HSTTTTTCEEEECSCTTSTHHHH-HHHHHHHTTCEEE
T ss_pred CCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH-----hcCCCccceEEEeCCccHHHHHH-HHHHHHhcCCEEE
Confidence 56789999999999999999999999999998887766 46788999999999999999984 7889999999999
Q ss_pred EeCC---cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecc
Q 037622 279 VMRR---FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQG 355 (560)
Q Consensus 279 ~~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 355 (560)
+.+. +++..+++.++++++|++.++|+++..++.. .......++++|.+++||+++++++.+++.+.||++++++.
T Consensus 214 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~ 292 (511)
T 3e7w_A 214 CVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMD-PGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNT 292 (511)
T ss_dssp ECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTS-TTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEC
T ss_pred EcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhc-cccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeC
Confidence 9876 6899999999999999999999999999876 44456678899999999999999999999999999999999
Q ss_pred cchhhcccccccCCCCC---CCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccC-
Q 037622 356 YGMTESTAVGTRGFNTK---KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID- 431 (560)
Q Consensus 356 YG~tE~~~~~~~~~~~~---~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~- 431 (560)
||+||++..++...... ......++|+|+|+++++|+| +++++++.|+.|||+|+||+++.||+++|+.|.+.|.
T Consensus 293 YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 371 (511)
T 3e7w_A 293 YGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFS 371 (511)
T ss_dssp CCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEE
T ss_pred cccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcC
Confidence 99999998766433221 123456799999999999999 5799999999999999999999999999999998882
Q ss_pred --CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCC
Q 037622 432 --KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS 509 (560)
Q Consensus 432 --~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 509 (560)
+..||+|||+|++ +||+++++||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.+++++++.++.
T Consensus 372 ~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~ 450 (511)
T 3e7w_A 372 HEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHE 450 (511)
T ss_dssp SSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCC
T ss_pred CCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEecccc
Confidence 2237999999999 6999999999999999999999999999999999999999999999888889999999988765
Q ss_pred CCCH----HHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 510 TLTE----AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 510 ~~~~----~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
.... ++++++++++|+.|++|+.++++++||+|++|||+|++|++.+.+
T Consensus 451 ~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 451 FEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp CSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhh
Confidence 4443 679999999999999999999999999999999999999998865
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-78 Score=637.73 Aligned_cols=494 Identities=22% Similarity=0.314 Sum_probs=419.6
Q ss_pred CHHHHHhccC-------CCCceEEEECC---CCceecHHHHHHHHHHHHHHHHHhh-CCCCCCEEEEEcCCCChHHHHHH
Q 037622 43 DVDSFIFSHK-------HNGRTALVDSL---SGYSISYPQLFPLVQSVASGLRHHF-GISQGDAVLLLLPNSIYFPVIFL 111 (560)
Q Consensus 43 ~~~~~~~~~~-------~~~~~a~~~~~---~~~~~Ty~el~~~v~~la~~L~~~~-g~~~gd~V~i~~~~~~~~~~~~l 111 (560)
++.+++.+++ .++++|+++.. .++++||+||.++++++|++|.+ . |+++||+|+|+++|++++++++|
T Consensus 39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~~Gv~~gd~V~i~~~n~~e~~~~~l 117 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSG-ACGLQRGDRVAVVLPRVPEWWLVIL 117 (570)
T ss_dssp HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHT-TTCCCTTCEEEEECCSCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHH-ccCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3456666544 46799998631 23789999999999999999998 7 99999999999999999999999
Q ss_pred HHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC----CC-CEEEecCCCcccccCCCcccHHHh
Q 037622 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG----TT-PVVAVPENLVNDFKEGRFSDFHKL 186 (560)
Q Consensus 112 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~----~~-~vi~~~~~~~~~~~~~~~~~~~~~ 186 (560)
||+++|++++|+++.++.+++.++++.+++ +++++++.....+.... .. .++.++... ......+.++
T Consensus 118 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 190 (570)
T 3c5e_A 118 GCIRAGLIFMPGTIQMKSTDILYRLQMSKA--KAIVAGDEVIQEVDTVASECPSLRIKLLVSEKS-----CDGWLNFKKL 190 (570)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTC--SEEEEETTTHHHHHHHGGGCTTCCEEEEESSSC-----CTTSEEHHHH
T ss_pred HHHHcCeEEEecCCCCCHHHHHHHHHhcCC--eEEEechHHHHHHHHHhhcCCceeEEEEecccC-----ccccccHHHH
Confidence 999999999999999999999999999999 99999887665554321 11 234443311 1223345555
Q ss_pred hcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHH--HHHHHHHhhhcccccCCCCcEEEEecChhhHHhHH
Q 037622 187 IAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIA--AVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLS 264 (560)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~ 264 (560)
+.............++++++|+|||||||.||+|+++|. ++. ..... . ...+.++|++++..|++|..++.
T Consensus 191 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~-----~~~~~~~d~~~~~~p~~~~~~~~ 263 (570)
T 3c5e_A 191 LNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-G-----WTGLQASDIMWTISDTGWILNIL 263 (570)
T ss_dssp HHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-T-----TTSCCTTCEEEECCCTTSHHHHH
T ss_pred hhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-h-----hcCCCCCceEEEcCchHHHHHHH
Confidence 443333223344568999999999999999999999999 444 22222 2 46788999999999999999987
Q ss_pred HHHHHHhhCCCEEEEeC--CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHH
Q 037622 265 LFALGLLSLGPSVVVMR--RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIED 342 (560)
Q Consensus 265 ~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~ 342 (560)
..++.++..|+++++.+ .+++..+++.++++++|+++++|++++.|.+. .....+++++|.+++||+++++++.++
T Consensus 264 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--~~~~~~~~~lr~i~~gGe~l~~~~~~~ 341 (570)
T 3c5e_A 264 CSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ--DLSSYKFPHLQNCVTVGESLLPETLEN 341 (570)
T ss_dssp HTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS--CTTTCCCTTCCEEEEESSCCCHHHHHH
T ss_pred HHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc--cccccccccceEEEEcCCcCCHHHHHH
Confidence 67888999999999987 68999999999999999999999999999864 233456789999999999999999999
Q ss_pred HHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEe-----cccchh
Q 037622 343 FVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLR-----GPGTMK 417 (560)
Q Consensus 343 ~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~-----~~~~~~ 417 (560)
+.+.+ ++++++.||+||++.+++.... .....+++|+|+|+++++|+| +++++++.|+.|||+|+ |++++.
T Consensus 342 ~~~~~-g~~i~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~ 417 (570)
T 3c5e_A 342 WRAQT-GLDIRESYGQTETGLTCMVSKT--MKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFS 417 (570)
T ss_dssp HHHHH-SCCCEEEEEETTTEEEEECCTT--SCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCC
T ss_pred HHHHh-CCchhhccchhhcccceecCcc--cccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhc
Confidence 99988 8999999999999876654432 234678999999999999999 67999999999999999 999999
Q ss_pred hhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCc
Q 037622 418 EYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGE 497 (560)
Q Consensus 418 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~ 497 (560)
||+++|+.|...| .++||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.++|+|.+++|++.+++..++
T Consensus 418 GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~ 496 (570)
T 3c5e_A 418 GYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGE 496 (570)
T ss_dssp EETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEE
T ss_pred cccCChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCe
Confidence 9999999999998 479999999999999999999999999999999999999999999999999999999999998889
Q ss_pred eEEEEEEecCCC--C---CCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 498 IPVAFVVRRDGS--T---LTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 498 ~~~~~v~~~~~~--~---~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
.++++|++.++. . ...++++++|+++|+.|++|+.|+++++||+|++||++|++|++.+..
T Consensus 497 ~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 497 VVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp EEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC
T ss_pred EEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHh
Confidence 999999986543 1 125789999999999999999999999999999999999999998753
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-78 Score=637.37 Aligned_cols=491 Identities=20% Similarity=0.291 Sum_probs=407.4
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.++|.+.++ ++++|+++. ++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v 80 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDCL--GERRTYGQLKRDSDSIAAFIDS-LALLAKSPVLVFGAQTYDMLATFVALTKSGHA 80 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TCCCTTCCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCCcceecC--CCeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 678888887764 669999987 8999999999999999999999 89999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVI 199 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (560)
++|+++.++.+++.++++.+++ ++++++++....+.. ..++.+. .+........+.......
T Consensus 81 ~vpl~~~~~~~~l~~il~~~~~--~~ii~~~~~~~~~~~---~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 142 (521)
T 3l8c_A 81 YIPVDVHSAPERILAIIEIAKP--SLIIAIEEFPLTIEG---ISLVSLS-------------EIESAKLAEMPYERTHSV 142 (521)
T ss_dssp EEEEETTSCHHHHHHHHHHSCC--SEEEESSCCCSCCTT---SEEEEHH-------------HHHHHHHHTCCCCCSSCC
T ss_pred EEecCccccHHHHHHHHHhCCC--CEEEecCcccccccc---Ccccchh-------------hhhhcccccCCcccCCCC
Confidence 9999999999999999999999 888887653221110 1111110 111111111122223455
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.++++++|+|||||||.||+|+++|+++.+......... .......++++...|++|..+.. .++.++..|+++++
T Consensus 143 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~~~~~ 218 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFDLSVM-YWAPTLALGGTLFA 218 (521)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSGGGHH-HHHHHHHTTCEEEE
T ss_pred CCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHHHHHH-HHHHHHhcCCEEEE
Confidence 789999999999999999999999999998777665421 25678899999999999998874 78889999999999
Q ss_pred eCCc---CHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeeccc
Q 037622 280 MRRF---EASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGY 356 (560)
Q Consensus 280 ~~~~---~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~Y 356 (560)
.+.. ++..+++.+.++++|++.++|+++..+... .......++++|.+++||+++++++.+++.+.|+++++++.|
T Consensus 219 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~Y 297 (521)
T 3l8c_A 219 LPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS-DDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAY 297 (521)
T ss_dssp CCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTS-TTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred cCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhh-hccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCc
Confidence 8864 899999999999999999999999998765 444556788999999999999999999999999999999999
Q ss_pred chhhcccccccCCCCCC---CCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhcc---
Q 037622 357 GMTESTAVGTRGFNTKK---FSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI--- 430 (560)
Q Consensus 357 G~tE~~~~~~~~~~~~~---~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~--- 430 (560)
|+||++.+++....... ....+++|+|+|+++++|+| +++++++.|+.|||+|+||+++.||+++|+.|.+.|
T Consensus 298 G~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~ 376 (521)
T 3l8c_A 298 GPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTF 376 (521)
T ss_dssp CCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEE
T ss_pred CccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCC
Confidence 99999987664332211 22456899999999999999 679999999999999999999999999999999887
Q ss_pred CCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCC-CCceEEEEEEecCCC
Q 037622 431 DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKV-LGEIPVAFVVRRDGS 509 (560)
Q Consensus 431 ~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~ 509 (560)
++++||+|||+|++|+||++++.||+||+||++|++|+|.|||++|.++|+|.+++|++.+++. .++.++++|++.++.
T Consensus 377 ~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~ 456 (521)
T 3l8c_A 377 KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGV 456 (521)
T ss_dssp TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTS
T ss_pred CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcc
Confidence 5678999999999999999999999999999999999999999999999999999999987654 457899999988764
Q ss_pred CCC-------HHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 510 TLT-------EAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 510 ~~~-------~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
... .++++++|+++|+.|++|+.++++++||+|++|||||++|++.+.++
T Consensus 457 ~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~ 513 (521)
T 3l8c_A 457 KERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNR 513 (521)
T ss_dssp GGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC--
T ss_pred ccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcC
Confidence 321 57899999999999999999999999999999999999999988654
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-77 Score=631.67 Aligned_cols=493 Identities=25% Similarity=0.343 Sum_probs=404.3
Q ss_pred CHHHHHhccC-CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEe
Q 037622 43 DVDSFIFSHK-HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVI 121 (560)
Q Consensus 43 ~~~~~~~~~~-~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 121 (560)
++.+++.+++ .++++|+++. ++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++++
T Consensus 25 ~~~~~l~~~~~~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 101 (529)
T 2v7b_A 25 FAAYLFRLNETRAGKTAYIDD--TGSTTYGELEERARRFASALRT-LGVHPEERILLVMLDTVALPVAFLGALYAGVVPV 101 (529)
T ss_dssp HHHHHHHHTGGGTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHhhhccCCceEEEeC--CCCccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEE
Confidence 3777777655 4669999987 6899999999999999999999 7999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC----C--CCEEEecCCCcccccCCCcccHHHhhcccCCCCC
Q 037622 122 PMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG----T--TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVE 195 (560)
Q Consensus 122 ~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~----~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (560)
|+++.++.+++.++++.+++ ++++++......+.... . ..++..+.... .......+.++.........
T Consensus 102 pl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 176 (529)
T 2v7b_A 102 VANTLLTPADYVYMLTHSHA--RAVIASGALVQNVTQALESAEHDGCQLIVSQPRES---EPRLAPLFEELIDAAAPAAK 176 (529)
T ss_dssp ECCTTCCHHHHHHHHHHHTC--SEEEEEGGGHHHHHHHHHCC---CCEEEEECC---------CCCBHHHHHHTSCCCSS
T ss_pred ecCcccCHHHHHHHHhccCC--eEEEechhhhhHHHHHHhhccccCceEEEeccccc---ccccccchhhhhccCCCccc
Confidence 99999999999999999999 99999887655443321 1 22333232110 00011245555443222223
Q ss_pred CCCCCCCCEEEEEcCCCCCCCchhhhhhhHHH-HHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCC
Q 037622 196 RPVIRQQDTAAILYSSGTTGASKGAELTHGNF-IAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLG 274 (560)
Q Consensus 196 ~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G 274 (560)
.....++++++|+|||||||.||+|+++|+++ ......... ...+.++|++++.+|++|.+++...++.++..|
T Consensus 177 ~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~-----~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G 251 (529)
T 2v7b_A 177 AAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKP-----ILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVG 251 (529)
T ss_dssp CCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCC-----CCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHT
T ss_pred ccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhh-----ccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Confidence 33457899999999999999999999999998 444332221 456788999999999999999976778899999
Q ss_pred CEEEEe-CCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeee
Q 037622 275 PSVVVM-RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFI 353 (560)
Q Consensus 275 ~~~v~~-~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~ 353 (560)
+++++. +.+++..+++.++++++|+++++|+++..+++. .........++|.+++||+++++++.+++.+.+ +++++
T Consensus 252 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~ 329 (529)
T 2v7b_A 252 ATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVS-PNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEIL 329 (529)
T ss_dssp CEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTC-TTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEE
T ss_pred cEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhC-cccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCcee
Confidence 999987 568999999999999999999999999999865 222222123799999999999999999999988 89999
Q ss_pred cccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCC
Q 037622 354 QGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKE 433 (560)
Q Consensus 354 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 433 (560)
+.||+||++.+++..... ....+++|+|+|+++++|+| +++++++.|+.|||+|+|++++.||+++|+.+...| .+
T Consensus 330 ~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~ 405 (529)
T 2v7b_A 330 DGIGSTEMLHIFLSNRAG--AVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LG 405 (529)
T ss_dssp EEEECTTTSSEEEECCTT--CCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ET
T ss_pred eeEchhhcCceeeccccC--CCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hc
Confidence 999999997665544322 24668999999999999999 679999999999999999999999999999999998 48
Q ss_pred CceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCC--
Q 037622 434 GWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTL-- 511 (560)
Q Consensus 434 ~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-- 511 (560)
+||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|+|.+++|++. ++..++.+++++++.++...
T Consensus 406 ~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~ 484 (529)
T 2v7b_A 406 EWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSE 484 (529)
T ss_dssp TEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCH
T ss_pred CCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcch
Confidence 999999999999999999999999999999999999999999999999999999998 66667888999998765421
Q ss_pred -CHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 512 -TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 512 -~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
..++++++|+++|+.|++|+.++++++||+|++||++|++|+++
T Consensus 485 ~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 529 (529)
T 2v7b_A 485 ILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529 (529)
T ss_dssp HHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC-
T ss_pred hHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhhC
Confidence 34689999999999999999999999999999999999999863
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-77 Score=634.03 Aligned_cols=476 Identities=19% Similarity=0.245 Sum_probs=405.8
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.++|.++++ ++++|+++. ++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++
T Consensus 39 ~~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 115 (563)
T 1amu_A 39 KTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIE-KGIGKDTLVGIMMEKSIDLFIGILAVLKAGGA 115 (563)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHCCCCeEEEeC--CceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 689999887764 679999987 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC-CCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPV 198 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (560)
++|+++.++.+++.++++.+++ ++++++......+..... ..+..+.... + ...........
T Consensus 116 ~vpl~~~~~~~~l~~il~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~~~~~-----------~----~~~~~~~~~~~ 178 (563)
T 1amu_A 116 YVPIDIEYPKERIQYILDDSQA--RMLLTQKHLVHLIHNIQFNGQVEIFEEDT-----------I----KIREGTNLHVP 178 (563)
T ss_dssp EEECCTTSCHHHHHHHHHHHTC--SEEEECGGGHHHHTTSCCCSEEEECCCST-----------T----TTSCCSCCCCC
T ss_pred EEEeCCCCcHHHHHHHHHhcCC--CEEEEcCchhhhhhhccccCceeeecchh-----------h----ccccCccCCCC
Confidence 9999999999999999999999 999998876554443321 1222222110 0 00011111223
Q ss_pred CCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEE
Q 037622 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278 (560)
Q Consensus 199 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 278 (560)
..++++++|+|||||||.||||+++|+++.+.+..... ...+.++|+++++.|++|..++. .++.++..|++++
T Consensus 179 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v 252 (563)
T 1amu_A 179 SKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFEN-----SLNVTEKDRIGQFASISFDASVW-EMFMALLTGASLY 252 (563)
T ss_dssp CCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHH-----TSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHH-----hcCCCCCCEEEEeCCccHHHHHH-HHHHHHHCCCEEE
Confidence 46789999999999999999999999999888776655 46788999999999999998884 7788999999999
Q ss_pred EeCC---cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecc
Q 037622 279 VMRR---FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQG 355 (560)
Q Consensus 279 ~~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 355 (560)
+.+. +++..+++.++++++|++.++|+++..+.. ..++++|.+++||+++++++.+++.+ .+++++.
T Consensus 253 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~-------~~~~~lr~~~~gG~~l~~~~~~~~~~---~~~~~~~ 322 (563)
T 1amu_A 253 IILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP-------ERILSIQTLITAGSATSPSLVNKWKE---KVTYINA 322 (563)
T ss_dssp ECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT-------TTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEE
T ss_pred EcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh-------cccccccEEEEEEecCCHHHHHHHHh---CCeEEEE
Confidence 9875 689999999999999999999999887743 24678999999999999999999876 3789999
Q ss_pred cchhhcccccccCCCCC-CCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccC---
Q 037622 356 YGMTESTAVGTRGFNTK-KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID--- 431 (560)
Q Consensus 356 YG~tE~~~~~~~~~~~~-~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--- 431 (560)
||+||++.+++...... ......++|+|+|+++++|+| +++++++.|+.|||+|+|++++.||+++|+.|.+.|.
T Consensus 323 YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~ 401 (563)
T 1amu_A 323 YGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNP 401 (563)
T ss_dssp ECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECS
T ss_pred ECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCC
Confidence 99999987766543222 123567899999999999999 6789999999999999999999999999999998873
Q ss_pred ---CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCC
Q 037622 432 ---KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDG 508 (560)
Q Consensus 432 ---~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 508 (560)
+++||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.+++++++..
T Consensus 402 ~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~- 480 (563)
T 1amu_A 402 FVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK- 480 (563)
T ss_dssp SSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS-
T ss_pred CCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC-
Confidence 2469999999999999999999999999999999999999999999999999999999999888889999998764
Q ss_pred CCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHH
Q 037622 509 STLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFL 556 (560)
Q Consensus 509 ~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~ 556 (560)
..+.++++++++++|+.|++|+.++++++||+|++||++|++|++..
T Consensus 481 -~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 481 -HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp -CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred -CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 46788999999999999999999999999999999999999998643
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-79 Score=646.28 Aligned_cols=480 Identities=21% Similarity=0.280 Sum_probs=319.3
Q ss_pred CCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 41 LLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 41 ~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
..+++++|.++++ ++++|+++. ++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|+
T Consensus 74 ~~~l~~~l~~~a~~~pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 150 (570)
T 4gr5_A 74 GACVHELFEAQAARAPDAVALLHE--ADELTYGALNERANRLAHRLVG-LGVAPGTLVGVHLERGFDMVVALLAVLKAGG 150 (570)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHCCCCeEEECC--CCcEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHHCC
Confidence 3689999988774 669999997 7899999999999999999999 7999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCC
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPV 198 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (560)
+++|++|.++.+++.++++.+++ ++++++......+.. ...+.+.+.. ............
T Consensus 151 ~~vpl~~~~~~~~l~~~l~~~~~--~~~i~~~~~~~~~~~---~~~~~~~~~~---------------~~~~~~~~~~~~ 210 (570)
T 4gr5_A 151 GYTMLDPQFPVERLALSLEDTGA--PLLVTSRPLSGRLTG---TTTLYVEDEA---------------ASDAPAGNLATG 210 (570)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTC--SEEEECTTTTTSSCS---SEEEECCC----------------------CCCCCCC
T ss_pred EEEEcCCCChHHHHHHHHHhcCC--CEEEecchhhhcccC---Ccceeeeccc---------------cccccccccCCC
Confidence 99999999999999999999999 889888764333211 1111111110 001111122334
Q ss_pred CCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEE
Q 037622 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278 (560)
Q Consensus 199 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 278 (560)
..++++++|+|||||||.||+|+++|+++.+..... ....++++|+++.++|++|..+. ..++.++..|++++
T Consensus 211 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~------~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v 283 (570)
T 4gr5_A 211 VGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ------DYAGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCV 283 (570)
T ss_dssp CCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC------CSSCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEE
T ss_pred CCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh------hhcCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEE
Confidence 578999999999999999999999999987654331 14567889999999999887666 47888999999999
Q ss_pred EeC--CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeeccc
Q 037622 279 VMR--RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGY 356 (560)
Q Consensus 279 ~~~--~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~Y 356 (560)
+.+ .+++..+++.++++++|++.++|+++..|++.. ...+++||.+++||+++++++.+++.+.++++++++.|
T Consensus 284 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 359 (570)
T 4gr5_A 284 LQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEV----PEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGY 359 (570)
T ss_dssp ECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC----GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred EcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc----hhhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEee
Confidence 987 478999999999999999999999999998752 23578999999999999999999999999899999999
Q ss_pred chhhcccccccCCCCC--CCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCC--
Q 037622 357 GMTESTAVGTRGFNTK--KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDK-- 432 (560)
Q Consensus 357 G~tE~~~~~~~~~~~~--~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-- 432 (560)
|+||++++++...... ......++|+|+|+++++|+| +++++++.|+.|||+|+||+++.||+++|+.|.+.|..
T Consensus 360 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~ 438 (570)
T 4gr5_A 360 GPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADP 438 (570)
T ss_dssp CCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECT
T ss_pred chhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCC
Confidence 9999988766443221 123456799999999999999 67999999999999999999999999999999988843
Q ss_pred ------CCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEec
Q 037622 433 ------EGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRR 506 (560)
Q Consensus 433 ------~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 506 (560)
++||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++++|+..
T Consensus 439 ~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~ 518 (570)
T 4gr5_A 439 FAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAE 518 (570)
T ss_dssp TCCSSCCEEEEEEEEEEECTTSCEEEEEC---------------------------------------------------
T ss_pred CCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEec
Confidence 37999999999999999999999999999999999999999999999999999999999888888999999876
Q ss_pred CC-CCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 507 DG-STLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 507 ~~-~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
.+ ...+.++++++|+++|+.|++|+.++++++||+|++|||+|++|++.
T Consensus 519 ~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 519 RADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp --------------------------------------------------
T ss_pred CCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 53 35677899999999999999999999999999999999999999875
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-77 Score=637.39 Aligned_cols=473 Identities=21% Similarity=0.223 Sum_probs=395.1
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|++++|.++++ ++++|++++ ++++||+||.++++++|++|.+ .|+++||+|+|+++|++++++++|||+++|++
T Consensus 27 ~tl~~~~~~~a~~~Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~ 103 (620)
T 4dg8_A 27 PTVVARFSEMAALHPHREAIRDR--FGSVDYRQLLDSAEQLSDYLLE-HYPQPGVCLGVYGEYSRESITCLLAILLSGHH 103 (620)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HCCSSCCEEEEESSSCHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHhCCCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 789999988874 779999998 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVI 199 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (560)
++|++|.++.+++.++++.+++ +++++++........ .....+.. . .........+..
T Consensus 104 ~vpld~~~p~~~l~~il~~~~~--~~vl~~~~~~~~~~~---~~~~~~~~----------------~-~~~~~~~~~~~~ 161 (620)
T 4dg8_A 104 YLYIDLKQPAAWNAELCRQVDC--RLILDCSTTPTPANG---LPCVPVRH----------------L-PAAPASVARPCF 161 (620)
T ss_dssp EEECCTTSCHHHHHHHHHHHTE--EEEEECCSSCCCCTT---SCEEEGGG----------------C-CCCCCCSSCCCC
T ss_pred EEeeCccChHHHHHHHHHhCCC--cEEEecCcccccccC---Cceeeecc----------------C-CcCCccccCCCC
Confidence 9999999999999999999999 888865443211100 11111110 0 011111222345
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.++++++|+|||||||.||||+++|+++.+.+.. .. ...+.++++++...|++|..++. .++.++..|+++++
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~-----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v~ 234 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QS-----FLAFAPQMRFLVNSPLSFDAATL-EIWGALLNGGCCVL 234 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CG-----GGTTCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEEE
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HH-----hhCCCCCCEEEEECccCHHHHHH-HHHHHHhcCCEEEe
Confidence 6899999999999999999999999998765543 11 46788999999999999999985 78999999999999
Q ss_pred eC--CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccc
Q 037622 280 MR--RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYG 357 (560)
Q Consensus 280 ~~--~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG 357 (560)
.+ .+++..+++.++++++|++.++|+++..+.+.. ...++++|.+++|||++++++.+++.+.+++++++|.||
T Consensus 235 ~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~----~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 310 (620)
T 4dg8_A 235 NDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD----PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYG 310 (620)
T ss_dssp CCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC----GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEEC
T ss_pred CccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC----hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEc
Confidence 65 579999999999999999999999999998642 235789999999999999999999998888999999999
Q ss_pred hhhcccccccCCCCC--CCCcccccccccCCeEEEEEeCCCCcc-CCCCCcceEEEecccchhhhcCCchhhhhccCCC-
Q 037622 358 MTESTAVGTRGFNTK--KFSKYFSVGLLAPNIQAKVVDWVNGCF-LPPGSTGELWLRGPGTMKEYINNADATMSTIDKE- 433 (560)
Q Consensus 358 ~tE~~~~~~~~~~~~--~~~~~~~~G~~~p~~~~~v~d~~~~~~-~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~- 433 (560)
+||++.+++...... ......++|+|+|+++++|+|+ ++++ ++.|+.|||+|+|++++.||+++|+.|.+.|..+
T Consensus 311 ~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p 389 (620)
T 4dg8_A 311 PTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDE-HGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELP 389 (620)
T ss_dssp CGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECT-TSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEE
T ss_pred hhhhhhheEEEeccccccCCCCCCceecccCcEEEEECc-cCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCC
Confidence 999998766433222 2335678999999999999995 5555 8999999999999999999999999999988543
Q ss_pred ------CceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecC
Q 037622 434 ------GWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD 507 (560)
Q Consensus 434 ------~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 507 (560)
+||+|||+|++++||.++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.+++++ ...
T Consensus 390 ~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~-~~~ 468 (620)
T 4dg8_A 390 YRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWT-GKA 468 (620)
T ss_dssp ETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEE-ECT
T ss_pred CCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEe-cCh
Confidence 7999999999999999999999999999999999999999999999999999999988875555544444 322
Q ss_pred CCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 508 GSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 508 ~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
++++++++++|+.|++|+.++++++||+|++||+||++|++.+.+
T Consensus 469 ------~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 469 ------DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp ------TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred ------HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence 224456778899999999999999999999999999999988754
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-77 Score=624.83 Aligned_cols=474 Identities=27% Similarity=0.397 Sum_probs=388.2
Q ss_pred CCHHHHHhccCC--CC-ceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 42 LDVDSFIFSHKH--NG-RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~-~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
.|+.+.+.++++ ++ ++|++++ ++++||+||.++++++|.+|. .|++|+|+++|++++++++|||+++|+
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~------~~~~V~i~~~~~~~~~~~~la~~~~Ga 93 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFG--ERSLTYAELAAAAGATAGRIG------GAGRVAVWATPAMETGVAVVAALLAGV 93 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC---------CEEEECCSSHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHhCCCCCeEEEEC--CeeeeHHHHHHHHHHHHhhcc------CCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 567777777665 33 8999998 899999999999999998774 378999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCC
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPV 198 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (560)
+++|++|.++.+++.++++.+++ ++++++...... ........+.+... .........
T Consensus 94 ~~vpl~~~~~~~~l~~il~~~~~--~~vi~~~~~~~~-~~~~~~~~~~~~~~-------------------~~~~~~~~~ 151 (505)
T 3nyq_A 94 AAVPLNPKSGDKELAHILSDSAP--SLVLAPPDAELP-PALGALERVDVDVR-------------------ARGAVPEDG 151 (505)
T ss_dssp CEEEECTTCCHHHHHHHHHHHCC--SEEEECTTCCCC-GGGTTSEEEECCTT-------------------CCCCCCCCC
T ss_pred EEEEcCCCCCHHHHHHHHHHCCC--CEEEECCccccc-hhhccccccccccc-------------------cccCCCCCC
Confidence 99999999999999999999999 888887542100 00000111111110 001112234
Q ss_pred CCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEE
Q 037622 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278 (560)
Q Consensus 199 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 278 (560)
..++++++|+|||||||.||+|+++|+++.+.+..... ...+.++|++++.+|++|..|+...++.++..|++++
T Consensus 152 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~ 226 (505)
T 3nyq_A 152 ADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALAD-----AWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVR 226 (505)
T ss_dssp CCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHH-----HHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEE
T ss_pred CCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHH-----HhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEE
Confidence 56789999999999999999999999999998887766 4678899999999999999998777899999999999
Q ss_pred EeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhcc--CCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeeccc
Q 037622 279 VMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGL--CGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGY 356 (560)
Q Consensus 279 ~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~--~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~Y 356 (560)
+.+.+++..+++.+ ++++|+++++|+++..+++..... ....++++|.+++||+++++++.+++.+.+ ++++++.|
T Consensus 227 ~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~Y 304 (505)
T 3nyq_A 227 HLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERY 304 (505)
T ss_dssp ECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEE
T ss_pred ECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeeccc
Confidence 99999999999999 889999999999999998742111 123467889999999999999999999988 89999999
Q ss_pred chhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCC---CCcceEEEecccchhhhcCCchhhhhccCCC
Q 037622 357 GMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPP---GSTGELWLRGPGTMKEYINNADATMSTIDKE 433 (560)
Q Consensus 357 G~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~---g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 433 (560)
|+||++..++.... .....+++|+|+|+++++|+| +++++++. |+.|||+|+|++++.||+++|+.|...|..+
T Consensus 305 G~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~ 381 (505)
T 3nyq_A 305 GMTETLMNTSVRAD--GEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTED 381 (505)
T ss_dssp EETTTEEEEECCTT--SCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTT
T ss_pred chhhcccccccCCC--CCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCC
Confidence 99999877665432 234678999999999999999 57888876 8999999999999999999999999999889
Q ss_pred CceecCceEEEccCCcEEEEccc-cceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecC-CCCC
Q 037622 434 GWLHTGDIAYFDEDGYLYIVDRL-KEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD-GSTL 511 (560)
Q Consensus 434 ~~~~TGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~ 511 (560)
+||+|||+|++++||.++++||+ ||+||.+|++|+|.|||++|.++|+|.+++|++.+++..++.++++|++.+ +...
T Consensus 382 g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~ 461 (505)
T 3nyq_A 382 GFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPP 461 (505)
T ss_dssp SCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCC
T ss_pred CCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCC
Confidence 99999999999999999999998 589999999999999999999999999999999999999999999999876 4466
Q ss_pred CHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 512 TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 512 ~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
+.++++++|+++|+.|++|+.++++++||+|++||++|++|++.
T Consensus 462 ~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 505 (505)
T 3nyq_A 462 ALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNRD 505 (505)
T ss_dssp CHHHHHHHHHHHTCGGGSCSEEEECSCCCC--------------
T ss_pred CHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhccC
Confidence 78899999999999999999999999999999999999999863
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-76 Score=619.47 Aligned_cols=486 Identities=24% Similarity=0.349 Sum_probs=384.8
Q ss_pred CHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeE
Q 037622 43 DVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIV 120 (560)
Q Consensus 43 ~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 120 (560)
|+.++|.++++ ++++|+++. ++++||+||.++++++|.+|.+ . +||+|+|+++|++++++++|||+++|+++
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~ 75 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG--QESYTYQNLYCEASLLAKRLKA-Y---QQSRVGLYIDNSIQSIILIHACWLANIEI 75 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHT-T---CCSEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHhcCCceEEEeC--CcEEEHHHHHHHHHHHHHHHHH-c---CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 45566666654 679999987 7899999999999999999988 4 89999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC---CCEEEecCCC---cccccCCCc-ccHHHhhcccC-C
Q 037622 121 IPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT---TPVVAVPENL---VNDFKEGRF-SDFHKLIAGKF-D 192 (560)
Q Consensus 121 v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~---~~vi~~~~~~---~~~~~~~~~-~~~~~~~~~~~-~ 192 (560)
+|+++.++.+++.++++.+++ ++++++............ ...+...... ......... ........... .
T Consensus 76 vpl~~~~~~~~l~~~l~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (501)
T 3ipl_A 76 AMINTRLTPNEMTNQMRSIDV--QLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPS 153 (501)
T ss_dssp EECCTTSCHHHHHHHHHHTTC--CEEEESSCCCCTTSEEEETTC--------------------------------CCHH
T ss_pred EecCccCCHHHHHHHHHhcCC--CEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCcc
Confidence 999999999999999999999 999988765433211100 0000000000 000000000 00000000000 0
Q ss_pred CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhh
Q 037622 193 LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLS 272 (560)
Q Consensus 193 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~ 272 (560)
........++++++|+|||||||.||+|+++|+++.+.+..... ...+.++|++++++|++|.+|+. .++.++.
T Consensus 154 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~ 227 (501)
T 3ipl_A 154 NILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE-----SLGFDRDTNWLSVLPIYHISGLS-VLLRAVI 227 (501)
T ss_dssp HHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH-----HTCCCTTCEEEECSCTTSHHHHH-HHHHHHH
T ss_pred cccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH-----hhCCCccCEEEEeCcHHHHHHHH-HHHHHHH
Confidence 11223457899999999999999999999999999988887766 46788999999999999999996 5888999
Q ss_pred CCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCee
Q 037622 273 LGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDF 352 (560)
Q Consensus 273 ~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i 352 (560)
.|+++++.+.+++..+++.++++++|++.++|+++..|++. ... ...++|.+++||+++++++.+.+.+. ++++
T Consensus 228 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~---~~~~lr~i~~gG~~l~~~~~~~~~~~--~~~~ 301 (501)
T 3ipl_A 228 EGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQ-GLH---EPYNLQKILLGGAKLSATMIETALQY--NLPI 301 (501)
T ss_dssp HTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHH-TCC---SCTTCCEEEECSSCCCHHHHHHHHHT--TCCE
T ss_pred cCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhc-CCC---CcCcccEEEEeCCCCCHHHHHHHHHh--CCCE
Confidence 99999999999999999999999999999999999999876 221 12389999999999999999999884 8999
Q ss_pred ecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCC
Q 037622 353 IQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDK 432 (560)
Q Consensus 353 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~ 432 (560)
++.||+||++..++...........+++|+|+|+++++++|++ .|+.|||+|+|++++.||+++++.+.. + .
T Consensus 302 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~ 373 (501)
T 3ipl_A 302 YNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-E 373 (501)
T ss_dssp EEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-E
T ss_pred eccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-c
Confidence 9999999998765544332223456789999999999999954 467899999999999999999999887 5 6
Q ss_pred CCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCC
Q 037622 433 EGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLT 512 (560)
Q Consensus 433 ~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 512 (560)
+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++++++... ..+
T Consensus 374 ~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~--~~~ 451 (501)
T 3ipl_A 374 NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSES--DIS 451 (501)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCC
T ss_pred CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCC--CCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988743 467
Q ss_pred HHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 513 EAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 513 ~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
.++++++|+++|+.|++|+.++++++||+|++||++|++|++...+
T Consensus 452 ~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 452 KAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp HHHHHHHHHHHSCGGGSCSEEEECSSCC------------------
T ss_pred HHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence 8999999999999999999999999999999999999999998765
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-74 Score=617.21 Aligned_cols=492 Identities=22% Similarity=0.287 Sum_probs=409.1
Q ss_pred CCHHHHHhccCC--CCceEEEEC--CCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhC
Q 037622 42 LDVDSFIFSHKH--NGRTALVDS--LSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~--~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G 117 (560)
.|+.+++.++++ ++++|+++. ..++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|
T Consensus 11 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 89 (590)
T 3kxw_A 11 QSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQA-EGAKPGDRVLLLFAPGLPLIQAFLGCLYAG 89 (590)
T ss_dssp SSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHHHHHhC
Confidence 789999988774 679998753 235899999999999999999999 799999999999999999999999999999
Q ss_pred CeEeccCCCC---CHHHHHHHHHhcCCceEEEEeeccchHHhhhcC-C-----CCEEEecCCCcccccCCCcccHHHhhc
Q 037622 118 AIVIPMNPLL---SVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG-T-----TPVVAVPENLVNDFKEGRFSDFHKLIA 188 (560)
Q Consensus 118 ~~~v~l~~~~---~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~-~-----~~vi~~~~~~~~~~~~~~~~~~~~~~~ 188 (560)
++++|++|.+ +.+++.++++.+++ ++++++.+....+.... . ..+.... .+.+..
T Consensus 90 ~~~vpl~~~~~~~~~~~~~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 153 (590)
T 3kxw_A 90 CIAVPIYPPAQEKLLDKAQRIVTNSKP--VIVLMIADHIKKFTADELNTNPKFLKIPAIA--------------LESIEL 153 (590)
T ss_dssp CEEEEECCCCSHHHHHHHHHHHHHHCC--SEEEECHHHHHHHCC-----CCEETTEEEEE--------------GGGCCG
T ss_pred cEEEEecCCCchHHHHHHHHHHHhCCC--CEEEeCHHHHHHHHHhhhhhcccccccceee--------------chhccc
Confidence 9999999988 45789999999999 88998887665554321 0 0111111 111111
Q ss_pred ccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHH
Q 037622 189 GKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFAL 268 (560)
Q Consensus 189 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 268 (560)
............++++++|+|||||||.||+|+++|+++.+.+..... ...+.++|++++++|++|.+|+...++
T Consensus 154 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~h~~g~~~~~~ 228 (590)
T 3kxw_A 154 NRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT-----SFHMNDETIIFSWLPPHHDMGLIGCIL 228 (590)
T ss_dssp GGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH-----HTTCCTTCEEEECSCTTSHHHHHTTTH
T ss_pred cccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH-----hhCCCCcCeEEEecCCCcchhhHHHHH
Confidence 111122334557899999999999999999999999999998888776 467889999999999999999975688
Q ss_pred HHhhCCCEEEEeCCc----CHHHHHHHHHHhCcceeccCcHHHHHHHHhh--hccCCCCCCccceeecccCCCCHHHHHH
Q 037622 269 GLLSLGPSVVVMRRF----EASEMLKVIDKYGVTHFPVVPPILMALTKAA--KGLCGNSLKSLKQVSSGAAPANSKIIED 342 (560)
Q Consensus 269 ~~l~~G~~~v~~~~~----~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~--~~~~~~~l~~lr~~~~~g~~~~~~~~~~ 342 (560)
.++..|+++++.+++ ++..+++.++++++|++.++|.++..+.+.. ......+++++|.+++||+++++++.++
T Consensus 229 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~ 308 (590)
T 3kxw_A 229 TPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEH 308 (590)
T ss_dssp HHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHH
Confidence 999999999998865 7899999999999999999999999987642 2234567899999999999999999999
Q ss_pred HHHhCC-----CCeeecccchhhcccccccCCCC-------------------------CCCCcccccccccCCeEEEEE
Q 037622 343 FVGAFP-----HVDFIQGYGMTESTAVGTRGFNT-------------------------KKFSKYFSVGLLAPNIQAKVV 392 (560)
Q Consensus 343 ~~~~~~-----~~~i~~~YG~tE~~~~~~~~~~~-------------------------~~~~~~~~~G~~~p~~~~~v~ 392 (560)
+.+.|+ +.++++.||+||++.+++..... .......++|+|+++ ++|+
T Consensus 309 ~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~ 386 (590)
T 3kxw_A 309 FYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKII 386 (590)
T ss_dssp HHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEE
T ss_pred HHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEE
Confidence 999873 45799999999999877653221 112345789999998 8889
Q ss_pred eCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCC------CC--ceecCceEEEccCCcEEEEccccceeeecc
Q 037622 393 DWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDK------EG--WLHTGDIAYFDEDGYLYIVDRLKEVIKYNG 464 (560)
Q Consensus 393 d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~~--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G 464 (560)
|++++.+++.|+.|||+|+||+++.||+++|+.|.+.|.. +| ||+|||+|+++ +|.++++||+||+||++|
T Consensus 387 d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G 465 (590)
T 3kxw_A 387 DPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYG 465 (590)
T ss_dssp CTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHH
T ss_pred cCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECC
Confidence 9877999999999999999999999999999999998853 24 99999999998 999999999999999999
Q ss_pred eecChHHHHHHH-hcCCCcc--cEEEEcccCCCCCceEEEEEEecCCC--CCCHHHHHHHHHhccCC-CCCcc-eEEEe-
Q 037622 465 YQISPADLETVL-ICHPEIL--DVAVTGAMDKVLGEIPVAFVVRRDGS--TLTEAAVIDYLAQRVAP-YKKVR-RVVFT- 536 (560)
Q Consensus 465 ~~v~~~~IE~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~~~l~~-~~~p~-~i~~~- 536 (560)
++|+|.|||++| ..+|.|. +++|++.+++. ++.++++++..++. ..+.++++++|+++|+. +++|. .++++
T Consensus 466 ~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~ 544 (590)
T 3kxw_A 466 KNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIP 544 (590)
T ss_dssp HTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEE
T ss_pred EecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEEC
Confidence 999999999999 7889998 79999988876 67788888877653 34567899999999885 77775 45555
Q ss_pred -cCCCCCCCCcchHHHHHHHHhcc
Q 037622 537 -KSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 537 -~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
++||+|++|||+|++|++.+.++
T Consensus 545 ~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 545 LKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp TTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred CCccCcCCCcHHHHHHHHHHHHcC
Confidence 79999999999999999998753
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-74 Score=659.21 Aligned_cols=480 Identities=23% Similarity=0.286 Sum_probs=412.1
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.+++++|.++++ ++++|++++ ++++||+||+++++++|++|.+ .|+++|++|+|+++|++++++++|||+++|++
T Consensus 464 ~~l~~~~~~~~~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~ 540 (1304)
T 2vsq_A 464 KPLTYWFKEAVNANPDAPALTYS--GQTLSYRELDEEANRIARRLQK-HGAGKGSVVALYTKRSLELVIGILGVLKAGAA 540 (1304)
T ss_dssp CCHHHHHHHHHHHCTTSEEEESS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHh-cCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCE
Confidence 689999988774 779999987 7999999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCC-CEEEecCCCcccccCCCcccHHHhhcccCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTT-PVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPV 198 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (560)
++|++|.++.+++.++++.+++ ++++++......+...... ..+.+++.. .. . .........
T Consensus 541 ~vpldp~~p~~rl~~il~~~~~--~~vl~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~-~~~~~~~~~ 603 (1304)
T 2vsq_A 541 YLPVDPKLPEDRISYMLADSAA--ACLLTHQEMKEQAAELPYTGTTLFIDDQT-------------RF-E-EQASDPATA 603 (1304)
T ss_dssp EEECCTTSCHHHHHHHHHHHTC--CEEEECSTTCTTSTTCCCCSEEEESSCGG-------------GG-G-SCSSCCCCC
T ss_pred EEEECCCCHHHHHHHHHHHcCC--CEEEECcchhhhhhccCCCCcEEEecccc-------------cc-c-cccCCCCCC
Confidence 9999999999999999999999 9999887654443222111 122222110 00 0 011112234
Q ss_pred CCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEE
Q 037622 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278 (560)
Q Consensus 199 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 278 (560)
..+++++||+|||||||.||||+++|+++.+.. .... ...++++++++.+.|++|..+. ..++.++..|++++
T Consensus 604 ~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~-----~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~ 676 (1304)
T 2vsq_A 604 IDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVD-----YMAFSDQDTFLSVSNYAFDAFT-FDFYASMLNAARLI 676 (1304)
T ss_dssp CCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCC-----SSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEE
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHH-----hcCCCCCCEEEEECCccHHHHH-HHHHHHHHcCCEEE
Confidence 578999999999999999999999999988642 2111 4667889999999999988887 48899999999999
Q ss_pred EeCC---cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecc
Q 037622 279 VMRR---FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQG 355 (560)
Q Consensus 279 ~~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 355 (560)
+.+. .++..+++.++++++|+++++|++++.+.+.. ...++++|.+++|||++++++.+++.+.+++.+++|.
T Consensus 677 ~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~----~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~ 752 (1304)
T 2vsq_A 677 IADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG----EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINC 752 (1304)
T ss_dssp ECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC----SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEE
T ss_pred ECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc----hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEe
Confidence 9874 68999999999999999999999999997641 2235789999999999999999999998877899999
Q ss_pred cchhhcccccccCCCCC--CCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccC--
Q 037622 356 YGMTESTAVGTRGFNTK--KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID-- 431 (560)
Q Consensus 356 YG~tE~~~~~~~~~~~~--~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-- 431 (560)
||+||++.+++...... ......++|+|++|++++|+| +++++++.|+.|||+|+|+++++||+++|+.|.+.|.
T Consensus 753 YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~ 831 (1304)
T 2vsq_A 753 YGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIEN 831 (1304)
T ss_dssp ECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEEC
T ss_pred EChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccC
Confidence 99999998776543322 223456899999999999999 6789999999999999999999999999999998883
Q ss_pred ----CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecC
Q 037622 432 ----KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD 507 (560)
Q Consensus 432 ----~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 507 (560)
+++||+|||+|++++||.++|+||+||+||++|++|++.|||++|.++|+|.+++|++.++...+..++++++...
T Consensus 832 p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~ 911 (1304)
T 2vsq_A 832 PFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT 911 (1304)
T ss_dssp TTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS
T ss_pred CCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC
Confidence 3469999999999999999999999999999999999999999999999999999999988888888999998765
Q ss_pred CCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 508 GSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 508 ~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
..+.++++++++++||.|++|..++++++||+|++|||||++|++.
T Consensus 912 --~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 912 --QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp --SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCC
T ss_pred --CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCc
Confidence 4678899999999999999999999999999999999999988653
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-75 Score=615.25 Aligned_cols=494 Identities=18% Similarity=0.197 Sum_probs=314.0
Q ss_pred CCHHHHHhccCC--CCceEEEECCC--------CceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHH
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLS--------GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~--------~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~l 111 (560)
.|+.++|.++++ ++++|+++... ++++||+||.++++++|++|.+ .|+ +||+|+|+++|++++++++|
T Consensus 20 ~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~~~~~~~l 97 (562)
T 3ite_A 20 VPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH-ASL-HGRAIAVSLDRSLIAFAIIV 97 (562)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHH-TTC-SSCEEEEECCSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEeCCCHHHHHHHH
Confidence 788888887774 67999986421 2789999999999999999998 799 79999999999999999999
Q ss_pred HHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccC
Q 037622 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKF 191 (560)
Q Consensus 112 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (560)
||+++|++++|+++.++.+++.++++.+++ +++++++.............++... ...+.+......
T Consensus 98 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 164 (562)
T 3ite_A 98 GIMKSGNTYVPIEAGLPNDRKSFLLRDSRA--AMAFVCDNNFDGVELPPETKVLDTK-----------NQSFIENLSTQD 164 (562)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTC--SEEEECTTTTTTCCCCTTCEEEETT-----------CHHHHHHHHHSC
T ss_pred HHHHhCCEEEecCCcCHHHHHHHHHHhcCC--CEEEEccccccccccCccceeeccc-----------chhhhhhccccc
Confidence 999999999999999999999999999999 8888876644332111111111111 112222222222
Q ss_pred CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhh---cccccCCCCcEEEEecChhhHHhHHHHHH
Q 037622 192 DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEA---SQYEYLSSEAVFLAVLPMFHIYGLSLFAL 268 (560)
Q Consensus 192 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 268 (560)
.........++++++|+|||||||.||+|+++|+++.+....+..... .....+...+++++..|+.|..++. .++
T Consensus 165 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 243 (562)
T 3ite_A 165 TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIG-EMF 243 (562)
T ss_dssp CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHH-HHH
T ss_pred ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHH-HHH
Confidence 222233446788999999999999999999999999887766554211 1124467889999999999988874 778
Q ss_pred HHhhCCCEEEEeCCcC-HHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhC
Q 037622 269 GLLSLGPSVVVMRRFE-ASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAF 347 (560)
Q Consensus 269 ~~l~~G~~~v~~~~~~-~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~ 347 (560)
.++..|+++++.+.+. +..+++.++++++|++.++|++++.+... ..+++++|.+++||+++++++.+++.+.+
T Consensus 244 ~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~-----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~ 318 (562)
T 3ite_A 244 LAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV-----PEDAPHLVYLGVGGEKMTPRTQQIWSSSD 318 (562)
T ss_dssp HHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-----GGGSTTCCEEEEESSCCCHHHHHHHTTCS
T ss_pred HHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-----ccccCceEEEEEecCCCCHHHHHHHhhCC
Confidence 8999999999887643 57788999999999999999998887433 23578999999999999999999999877
Q ss_pred CCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhh
Q 037622 348 PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATM 427 (560)
Q Consensus 348 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~ 427 (560)
++++++.||+||++..++...... ....+++|+|+++++++++|++++++++.|+.|||+|+|++++.||+++|+.+.
T Consensus 319 -~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~ 396 (562)
T 3ite_A 319 -RVALVNVYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKG 396 (562)
T ss_dssp -SCEEEEEECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCS
T ss_pred -CcEEEEeeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccc
Confidence 899999999999987766543322 345678999999999999998889999999999999999999999999999887
Q ss_pred hcc-CCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcC-CCcccEEEEcccCCCCCceEEEEEEe
Q 037622 428 STI-DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICH-PEILDVAVTGAMDKVLGEIPVAFVVR 505 (560)
Q Consensus 428 ~~~-~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~ 505 (560)
..+ ++++||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.++ |.+.+++|++.+++..++..++.++.
T Consensus 397 ~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~ 476 (562)
T 3ite_A 397 FCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVA 476 (562)
T ss_dssp EEEETTEEEEEEEEEEEECTTSCEEEEEEC--------------------------------------------------
T ss_pred cccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEe
Confidence 664 2234999999999999999999999999999999999999999999998 88888999988888777766666554
Q ss_pred cCCCCC-------------CHHHHHHHHHhccCCCCCcceEEEecCCCCC-CCCcchHHHHHHHHhc
Q 037622 506 RDGSTL-------------TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKS-AAGKVLRRELRKFLTS 558 (560)
Q Consensus 506 ~~~~~~-------------~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t-~~GKi~r~~L~~~~~~ 558 (560)
..+... ..++|+++|+++|+.|++|+.|+++++||+| ++||++|++|++.+.+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~ 543 (562)
T 3ite_A 477 SSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHT 543 (562)
T ss_dssp -------------------------------------------------------------------
T ss_pred cccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhc
Confidence 433222 2348999999999999999999999999998 8999999999998764
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-60 Score=492.54 Aligned_cols=386 Identities=20% Similarity=0.298 Sum_probs=316.9
Q ss_pred CCHHHHHhccCC--CCceEEEECC-----CC--ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHH
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSL-----SG--YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLA 112 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~-----~~--~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA 112 (560)
.|+.++|.++++ ++++|+++.. ++ +++||+||.++++++|++|.+ .|+ +||+|+|+++|++++++++||
T Consensus 24 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~e~~~~~lA 101 (480)
T 3t5a_A 24 RSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSR-CGS-TGDRVVISAPQGLEYVVAFLG 101 (480)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTT-SSC-TTCEEEEECCSSHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEcCCcHHHHHHHHH
Confidence 899999988774 6799998642 22 799999999999999999999 796 999999999999999999999
Q ss_pred HHHhCCeEeccCC---CCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCC-------CEEEecCCCcccccCCCccc
Q 037622 113 LLYLGAIVIPMNP---LLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTT-------PVVAVPENLVNDFKEGRFSD 182 (560)
Q Consensus 113 ~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~~~~~~~ 182 (560)
|+++|++++|+++ .++.+++.++++.+++ ++++++......+...... .++.++.
T Consensus 102 ~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 166 (480)
T 3t5a_A 102 ALQAGRIAVPLSVPQGGVTDERSDSVLSDSSP--VAILTTSSAVDDVVQHVARRPGESPPSIIEVDL------------- 166 (480)
T ss_dssp HHHTTCEEEEECSCCSCTTCCHHHHHHHHHCC--SEEEECTTTHHHHHHTCC------CCEEEEGGG-------------
T ss_pred HHHhCcEEEeeCCCCccchHHHHHHHHHhCCC--CEEEeChhHHHHHHHHHhccccccccceeEecc-------------
Confidence 9999999999999 7889999999999999 9999998877666543321 1121111
Q ss_pred HHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCC------CcEEEEecC
Q 037622 183 FHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSS------EAVFLAVLP 256 (560)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~p 256 (560)
...............++++++|+|||||||.||+|+++|+++.+.+..... ...+.. ++++++++|
T Consensus 167 ---~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-----~~~~~~~~~~~~~d~~l~~~p 238 (480)
T 3t5a_A 167 ---LDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMS-----GYFADTDGIPPPNSALVSWLP 238 (480)
T ss_dssp ---SCTTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHH-----HHCTTTTTCCCTTEEEEECCC
T ss_pred ---cccccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHH-----HhccccccCCCCCCeEEEeCC
Confidence 001111122334456789999999999999999999999999988877765 344555 899999999
Q ss_pred hhhHHhHHHHHHHHhhCCCEEEEeCCc----CHHHHHHHHHHhCcceeccCcHHHHHHHHhh---hccCCCCCCccceee
Q 037622 257 MFHIYGLSLFALGLLSLGPSVVVMRRF----EASEMLKVIDKYGVTHFPVVPPILMALTKAA---KGLCGNSLKSLKQVS 329 (560)
Q Consensus 257 ~~~~~g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~---~~~~~~~l~~lr~~~ 329 (560)
++|.+|+...++.++..|+++++.++. ++..+++.++++++| +.++|+++..++... ......++++||.++
T Consensus 239 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~ 317 (480)
T 3t5a_A 239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTIL 317 (480)
T ss_dssp TTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEE
T ss_pred CcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheee
Confidence 999999877889999999999998753 899999999999999 889999998887641 234456789999999
Q ss_pred cccCCCCHHHHHHHHHhC-----CCCeeecccchhhcccccccCCCCCC-----------------------CCcccccc
Q 037622 330 SGAAPANSKIIEDFVGAF-----PHVDFIQGYGMTESTAVGTRGFNTKK-----------------------FSKYFSVG 381 (560)
Q Consensus 330 ~~g~~~~~~~~~~~~~~~-----~~~~i~~~YG~tE~~~~~~~~~~~~~-----------------------~~~~~~~G 381 (560)
+||+++++++.+++.+.| +++.+++.||+||++.+++....... .....++|
T Consensus 318 ~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G 397 (480)
T 3t5a_A 318 SGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYM 397 (480)
T ss_dssp ECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEE
T ss_pred ecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecC
Confidence 999999999999999998 35689999999999987766543211 13456899
Q ss_pred cccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccC-----------CCCceecCceEEEccCCcE
Q 037622 382 LLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID-----------KEGWLHTGDIAYFDEDGYL 450 (560)
Q Consensus 382 ~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~~g~l 450 (560)
+|+| ++++|+|++++++++.|+.|||+|+||+++.||+++|+.|.+.|+ .++||+|||+|+++ ||+|
T Consensus 398 ~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l 475 (480)
T 3t5a_A 398 LPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKM 475 (480)
T ss_dssp CCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEE
T ss_pred cccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEE
Confidence 9999 999999987799999999999999999999999999999999885 56799999999996 9999
Q ss_pred EEEcc
Q 037622 451 YIVDR 455 (560)
Q Consensus 451 ~~~GR 455 (560)
+|+||
T Consensus 476 ~~~GR 480 (480)
T 3t5a_A 476 FIIGR 480 (480)
T ss_dssp EECC-
T ss_pred EEeCC
Confidence 99998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-56 Score=440.69 Aligned_cols=316 Identities=20% Similarity=0.231 Sum_probs=270.6
Q ss_pred CCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEe
Q 037622 201 QQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVM 280 (560)
Q Consensus 201 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 280 (560)
.+++++|+|||||||.||+|++||+++.+.+..... ...++++|++++++|++|++|+. .++.++..|+++++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~ 109 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK-----ALSLGPGTRALVCLNVGYIAGLM-MLVRGMELDWELTVT 109 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH-----HTTCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEE
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH-----HhCCCCCCEEEEECChHHHHHHH-HHHHHHHhCcEEEec
Confidence 478999999999999999999999999998887776 56789999999999999999995 677888999999887
Q ss_pred CCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhh
Q 037622 281 RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTE 360 (560)
Q Consensus 281 ~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE 360 (560)
++. ...++.++++++|++.++|+++..|++.. ....++++||.+++||+++++++.+++.+. ++++++.||+||
T Consensus 110 ~~~--~~~~~~i~~~~~t~~~~~P~~l~~ll~~~--~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TE 183 (358)
T 4gs5_A 110 EPT--ANPLAGLDHADFDFVAMVPMQLQSILENS--ATSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTE 183 (358)
T ss_dssp CCC--SCTTTTCSSCCCSEEEECHHHHHHHHHCT--TTGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGG
T ss_pred Ccc--ccHHHHHHHhCCeEEEcChHHHHHhhccc--cccccCCcceEEEEcccCCCchheeccccc--CceEEecccccc
Confidence 652 23466788999999999999999998752 234468899999999999999999999875 899999999999
Q ss_pred cccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCc
Q 037622 361 STAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGD 440 (560)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD 440 (560)
++..++..... ....+.+|.+.||+.+.+.+ .||++++|+.. .+|||+|||
T Consensus 184 t~~~~~~~~~~--~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TGD 234 (358)
T 4gs5_A 184 TVSHVALKALN--GPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTND 234 (358)
T ss_dssp GSSEEEEEECS--STTCCSCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEEE
T ss_pred ccceeeccccc--ccccceeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecCC
Confidence 99877655433 23567899999999887633 49999998632 578999999
Q ss_pred eEEEccCCcEEEEccccceeeecceecChHHHHHHH---hcCCCcccEEEE-cccCCCCCceEEEEEEecCCCCCCHHHH
Q 037622 441 IAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVL---ICHPEILDVAVT-GAMDKVLGEIPVAFVVRRDGSTLTEAAV 516 (560)
Q Consensus 441 ~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l---~~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l 516 (560)
+|++|++| ++++||+||+||++|++|+|.|||++| .+||.|.+++|+ +.+++..|+.++++|+...+ ....+++
T Consensus 235 lg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~~~~~~l 312 (358)
T 4gs5_A 235 LVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-EALTERL 312 (358)
T ss_dssp EEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-HHHHHHH
T ss_pred ccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-CcCHHHH
Confidence 99999888 677899999999999999999999877 468999998776 67788888999888876543 4556789
Q ss_pred HHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 517 IDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 517 ~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+++|+++|+.|++|+.|+++++||+|++|||+|++|++++++.
T Consensus 313 ~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 313 TAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp HHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred HHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999998764
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-51 Score=419.33 Aligned_cols=331 Identities=19% Similarity=0.159 Sum_probs=275.1
Q ss_pred CCCC-CCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCE
Q 037622 198 VIRQ-QDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPS 276 (560)
Q Consensus 198 ~~~~-~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~ 276 (560)
...+ +++++++|||||||.||+|+++|.++............ ..++.++|+++...|+.|..+....++.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLY--MVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHH--HTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHH--HcCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3455 88999999999999999999999999877666543221 35678999999999987776666678889999999
Q ss_pred EEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCC--CCCccceeecccCCCCHHHHHHHHHhCCCCeeec
Q 037622 277 VVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGN--SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354 (560)
Q Consensus 277 ~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~--~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~ 354 (560)
+++.+..++..+++.++++++|+++++|+++..|++.. ..... .++++|.+++|||++++++.+.+.+.| ++++++
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~ 236 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVF-QEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYN 236 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHH-HHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEE
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHH-HHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEe
Confidence 99998889999999999999999999999999998763 22233 378999999999999999999999999 899999
Q ss_pred ccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCC
Q 037622 355 GYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEG 434 (560)
Q Consensus 355 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~ 434 (560)
.||+||+++.++..... .....|.+.+++.++|+|++++++++.|+.|||+|+|+ +...+ ..+
T Consensus 237 ~YG~TE~~~~~~~~~~~----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~~~~-~~~ 299 (436)
T 3qov_A 237 SFGMTEMNGPGVAFECQ----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DREMM-PLI 299 (436)
T ss_dssp EEEEGGGTEEEEEEECT----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SCCSS-CCC
T ss_pred cCcchhhcCCeeEEecC----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------CcCCc-eEE
Confidence 99999995432221111 12236778889999999988999999999999999984 22233 578
Q ss_pred ceecCceEEEccCC------c---EEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEe
Q 037622 435 WLHTGDIAYFDEDG------Y---LYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVR 505 (560)
Q Consensus 435 ~~~TGD~~~~~~~g------~---l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 505 (560)
||+|||+|+++++| . +++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++
T Consensus 300 ~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~ 379 (436)
T 3qov_A 300 RYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVEL 379 (436)
T ss_dssp SEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEE
Confidence 99999999999998 5 69999999999999999999999999999999999999999888888899999998
Q ss_pred cCCCCCC----HHHHHHHHHhccCCC-CCcceEEEec--CCCCCCCCcchHHH
Q 037622 506 RDGSTLT----EAAVIDYLAQRVAPY-KKVRRVVFTK--SIPKSAAGKVLRRE 551 (560)
Q Consensus 506 ~~~~~~~----~~~l~~~~~~~l~~~-~~p~~i~~~~--~lP~t~~GKi~r~~ 551 (560)
. +...+ .++++++++++|+.+ +.|..+++++ +||+|+ ||++|..
T Consensus 380 ~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 380 S-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp C-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred c-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 8 54444 678999999999988 8999999998 999999 9999853
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=417.22 Aligned_cols=334 Identities=19% Similarity=0.184 Sum_probs=276.8
Q ss_pred CCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecCh-hhHHhHHHHHHHHhhCCCE
Q 037622 198 VIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPM-FHIYGLSLFALGLLSLGPS 276 (560)
Q Consensus 198 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~ 276 (560)
...++++++++|||||||.||+|+++|.++............ ..++.++|+++...|+ +|..++ ...+.++..|++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~ 164 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIR--AAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCM 164 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCE
Confidence 346789999999999999999999999998876655443211 3567889999999998 466665 467888999999
Q ss_pred EEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCC--CCccceeecccCCCCHHHHHHHHHhCCCCeeec
Q 037622 277 VVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNS--LKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354 (560)
Q Consensus 277 ~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~--l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~ 354 (560)
+++.+.+++..+++.++++++|++.++|+++..|++.. .....+ ++++|.+++|||++++++.+.+.+.| ++++++
T Consensus 165 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~-~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~ 242 (443)
T 2y4o_A 165 VVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEM-VRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALD 242 (443)
T ss_dssp EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEE
T ss_pred EEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHH-HHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEe
Confidence 99988889999999999999999999999999998762 222232 47899999999999999999999998 899999
Q ss_pred ccchhhccc--ccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCC
Q 037622 355 GYGMTESTA--VGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDK 432 (560)
Q Consensus 355 ~YG~tE~~~--~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~ 432 (560)
.||+||+++ ++..+.. .....+.+.+++.++|+|++++++++.|+.|||+|+|. +...+ .
T Consensus 243 ~YG~TE~~g~~~~~~~~~-----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p 304 (443)
T 2y4o_A 243 IYGLSEVMGPGVACECVE-----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-P 304 (443)
T ss_dssp EEEETTTTEEEEEEECTT-----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-C
T ss_pred ccCchhhcCCeEEeccCC-----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-h
Confidence 999999743 3322211 11125567789999999988899999999999999973 22234 5
Q ss_pred CCceecCceEEEccC-CcE-----EEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEec
Q 037622 433 EGWLHTGDIAYFDED-GYL-----YIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRR 506 (560)
Q Consensus 433 ~~~~~TGD~~~~~~~-g~l-----~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 506 (560)
.+||+|||+|+++++ |++ ++.||.||+||++|++|+|.+||++|.++|+|.++++++.+++..++.++++|++.
T Consensus 305 ~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~ 384 (443)
T 2y4o_A 305 VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELR 384 (443)
T ss_dssp CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEEC
Confidence 789999999999999 986 89999999999999999999999999999999999999888776678889998876
Q ss_pred C--C---CCCCHHHHHHHHHhccCCC-CCcceEEEe--cCCCCCCCCcchHHHHHH
Q 037622 507 D--G---STLTEAAVIDYLAQRVAPY-KKVRRVVFT--KSIPKSAAGKVLRRELRK 554 (560)
Q Consensus 507 ~--~---~~~~~~~l~~~~~~~l~~~-~~p~~i~~~--~~lP~t~~GKi~r~~L~~ 554 (560)
+ + ...+.++++++|+++|+.+ ..|..+.++ ++||+|++||++|+..++
T Consensus 385 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 385 SEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDRR 440 (443)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEECC
T ss_pred CcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEecc
Confidence 5 2 2345578999999999887 488888888 599999999999975443
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=409.06 Aligned_cols=330 Identities=17% Similarity=0.152 Sum_probs=276.2
Q ss_pred CCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecCh-hhHHhHHHHHHHHhhCCCE
Q 037622 198 VIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPM-FHIYGLSLFALGLLSLGPS 276 (560)
Q Consensus 198 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~ 276 (560)
...++++++++|||||||.||+|+++|.++............ ..++.++|+++..+|+ +|..++. ..+.++..|++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~~ 162 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIR--AAGARRGDKVHVSYGYGLFTGGLG-AHYGAERAGLT 162 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHTTCE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEcccccccccchH-HHHHHHHcCCE
Confidence 346689999999999999999999999998877655443211 3567889999999998 6777664 67888999999
Q ss_pred EEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCC--CCccceeecccCCCCHHHHHHHHHhCCCCeeec
Q 037622 277 VVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNS--LKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354 (560)
Q Consensus 277 ~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~--l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~ 354 (560)
+++.+.+++..+++.++++++|+++++|+++..|++... ....+ ++++|.+++||+++++++.+.+.+.| ++++++
T Consensus 163 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~-~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~ 240 (437)
T 2y27_A 163 VIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIE-RQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVD 240 (437)
T ss_dssp EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-HTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEE
T ss_pred EEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHH-HcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEe
Confidence 998888899999999999999999999999999987632 22232 47899999999999999999999988 899999
Q ss_pred ccchhhc-cc-ccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCC
Q 037622 355 GYGMTES-TA-VGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDK 432 (560)
Q Consensus 355 ~YG~tE~-~~-~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~ 432 (560)
.||+||+ +. ++..+. . .....+.+.+++.++|+|++++++++.|+.|||+|+|. +...+ .
T Consensus 241 ~YG~TE~~g~~~~~~~~-~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~ 302 (437)
T 2y27_A 241 IYGLSEVMGPGVASECV-E----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-P 302 (437)
T ss_dssp EEEETTTTEEEEEECCT-T----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-C
T ss_pred cCCchhhcCCeeEEecC-C----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-h
Confidence 9999998 43 333221 1 11125667799999999988899999999999999973 22334 5
Q ss_pred CCceecCceEEEcc-CCcE-----EEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEec
Q 037622 433 EGWLHTGDIAYFDE-DGYL-----YIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRR 506 (560)
Q Consensus 433 ~~~~~TGD~~~~~~-~g~l-----~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 506 (560)
.+||+|||+|++++ +|++ ++.||.||+||++|++|+|.+||++|.++|+|.++++++.+++..++.++++|++.
T Consensus 303 ~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~ 382 (437)
T 2y27_A 303 IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPC 382 (437)
T ss_dssp CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBC
T ss_pred hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEEC
Confidence 78999999999998 6985 89999999999999999999999999999999999999888777778899999887
Q ss_pred CCCC---CCHHHHHHHHHhccCCC-CCcceEEEe--cCCCCCCCCcchHHH
Q 037622 507 DGST---LTEAAVIDYLAQRVAPY-KKVRRVVFT--KSIPKSAAGKVLRRE 551 (560)
Q Consensus 507 ~~~~---~~~~~l~~~~~~~l~~~-~~p~~i~~~--~~lP~t~~GKi~r~~ 551 (560)
++.. .+.++++++|+++|+.+ .+|..|.++ ++||+|+ ||++|+.
T Consensus 383 ~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 383 PETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred CCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 6643 34578999999999988 588888888 5999999 9999964
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-32 Score=274.43 Aligned_cols=242 Identities=19% Similarity=0.158 Sum_probs=183.6
Q ss_pred CCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecCh-hhHHhHHHHHHHHhhCCCE
Q 037622 198 VIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPM-FHIYGLSLFALGLLSLGPS 276 (560)
Q Consensus 198 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~ 276 (560)
...++++++|+|||||||.||+|+++|.++............ ..++.++|++++..|+ +|..++. ..+.++..|+
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~g~~~~g~~-~~~~~~~~G~- 162 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQ--HRPGRPSGNTLAAIPTGPHIVGAI-NKERALRLGG- 162 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTT--TSTTCCCCEEEECSCCTTCHHHHH-HHHHHHHTTS-
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHH--hhCCCCcceEEEecCCCchhhhHH-HHHHHHHcCC-
Confidence 346789999999999999999999999999988776543221 4567889999999999 9999985 5556688898
Q ss_pred EEEeCCcCHH-----------------------HHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccC
Q 037622 277 VVVMRRFEAS-----------------------EMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAA 333 (560)
Q Consensus 277 ~v~~~~~~~~-----------------------~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~ 333 (560)
+++...+++. .+++.++++++|++.++|+++..|++. .......++++|.+++|||
T Consensus 163 ~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~-~~~~~~~~~~lr~i~~gGe 241 (369)
T 3hgu_A 163 MFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKR-PEVVLQMKQSLAQITLGGT 241 (369)
T ss_dssp CEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTC-HHHHHHHHHHCSEEEEESS
T ss_pred EEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhh-hhhhccccCCeeEEEECCc
Confidence 6666677777 888899999999999999999999875 2222345678999999999
Q ss_pred CCCHHHHHHHH-HhCCCCeeecccchhhcccccccCCCCCCCCcccccccc------cCCeEEEEEeCCCCccCCCCCcc
Q 037622 334 PANSKIIEDFV-GAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLL------APNIQAKVVDWVNGCFLPPGSTG 406 (560)
Q Consensus 334 ~~~~~~~~~~~-~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~------~p~~~~~v~d~~~~~~~~~g~~G 406 (560)
++++++++++. +.||++++++.||+||+++++..+.. .++|.+ .|+++++|+|++++++++.|+.|
T Consensus 242 ~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~G 314 (369)
T 3hgu_A 242 ELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERG 314 (369)
T ss_dssp CCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEE
T ss_pred cCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCce
Confidence 99999999999 99999999999999999877643321 147888 99999999997789999999999
Q ss_pred eEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccC--C-------cEEEEccccceeeecce
Q 037622 407 ELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDED--G-------YLYIVDRLKEVIKYNGY 465 (560)
Q Consensus 407 el~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------~l~~~GR~~d~i~~~G~ 465 (560)
||+|++..-. .+ -..|+|||++.+.+. | .+..++|.++..++.|.
T Consensus 315 El~vt~l~~~------------~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 315 NVIVTHLSPW------------AF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEEETT------------EE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEEEcCcc------------cc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9999874210 00 113889999888543 2 35667777777777664
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-14 Score=115.91 Aligned_cols=95 Identities=20% Similarity=0.182 Sum_probs=72.5
Q ss_pred ccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCH---HHHHHHHHhccCCC-CC
Q 037622 454 DRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTE---AAVIDYLAQRVAPY-KK 529 (560)
Q Consensus 454 GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~~-~~ 529 (560)
.|.||||+++|.+|+|.|||++|.+||+|.++++++.+++..++.+.++|+..++...+. +++.+.+++++..+ .+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 489999999999999999999999999999999999999998999999998877654443 34444455444322 23
Q ss_pred cceEEEe--cCCCCCCCCcchH
Q 037622 530 VRRVVFT--KSIPKSAAGKVLR 549 (560)
Q Consensus 530 p~~i~~~--~~lP~t~~GKi~r 549 (560)
+..++++ ++||+| +||++|
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CCEEEEECTTCSCCC----CCC
T ss_pred ccceEEEcCCeecCC-CCCcch
Confidence 4456666 489998 799987
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.8e-10 Score=116.79 Aligned_cols=134 Identities=16% Similarity=0.152 Sum_probs=90.2
Q ss_pred CCc---cceeecccCCCCHHHHHHHHHhCCCCeee-cccchhhcccccccCCCCCCCCccccccc-ccCC-eEEEEEeCC
Q 037622 322 LKS---LKQVSSGAAPANSKIIEDFVGAFPHVDFI-QGYGMTESTAVGTRGFNTKKFSKYFSVGL-LAPN-IQAKVVDWV 395 (560)
Q Consensus 322 l~~---lr~~~~~g~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G~-~~p~-~~~~v~d~~ 395 (560)
+++ +..++.||- ......++..+++.++. ..|++||+ .++.-. .+ ...+...+. .+|+ +..+.++.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~--~p-~~~~~~~~~~L~~~~~ffEFip~~ 368 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGINL--DP-LCKPEDVSYTFMPNMSYFEFIPMD 368 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEECS--CT-TSCGGGCCEEECTTSSEEEEEECS
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeecc--CC-CCCcccCceeecCCcEEEEEEecc
Confidence 466 555666662 44456666666678887 99999994 333211 11 111122222 2333 455676532
Q ss_pred C--------CccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEcc----CCcEEEEccccceeeec
Q 037622 396 N--------GCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDE----DGYLYIVDRLKEVIKYN 463 (560)
Q Consensus 396 ~--------~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~ 463 (560)
+ ...|..|+.+||++++.+ |.|+ |++||++++.. ..++.|+||.+|++++.
T Consensus 369 ~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~ 431 (581)
T 4eql_A 369 GGDKNDVVDLEDVKLGCTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSID 431 (581)
T ss_dssp TTCCSSCEEGGGCCTTCEEEEEEECSS---SCCS--------------EECCEEEEEEEEETTEEEEEEEEETTEEECSS
T ss_pred ccCCCcEeCHHHcCCCceEEEEEeecc---ceee--------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEee
Confidence 2 145678999999998752 2222 99999999976 35899999999999999
Q ss_pred ceecChHHHHHHHhcC
Q 037622 464 GYQISPADLETVLICH 479 (560)
Q Consensus 464 G~~v~~~~IE~~l~~~ 479 (560)
|++++..+||++|.+.
T Consensus 432 Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 432 SDKTNEEDLFKAVSQA 447 (581)
T ss_dssp SCCEEHHHHHHHHHHC
T ss_pred eeECCHHHHHHHHHHH
Confidence 9999999999999744
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=99.11 E-value=7e-10 Score=113.93 Aligned_cols=132 Identities=16% Similarity=0.127 Sum_probs=88.4
Q ss_pred CCcc---ceeecccCCCCHHHHHHHHHhCCCCeee-cccchhhcccccccCCCCCCCCcccccc-cccCC-eEEEEEeCC
Q 037622 322 LKSL---KQVSSGAAPANSKIIEDFVGAFPHVDFI-QGYGMTESTAVGTRGFNTKKFSKYFSVG-LLAPN-IQAKVVDWV 395 (560)
Q Consensus 322 l~~l---r~~~~~g~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G-~~~p~-~~~~v~d~~ 395 (560)
++++ ..++.|| + ......++..+++.++. ..|++||. .++....+ ...+...+ ..+|+ +-.+.++.+
T Consensus 301 WPnlk~l~~~~tG~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p---~~~p~~~~~~L~p~~~ffEFIP~~ 373 (609)
T 4b2g_A 301 WPNTKYLDVIVTGA--M-AQYIPTLDYYSGGLPLACTMYASSEC-YFGLNLNP---MSKPSEVSYTIMPNMAYFEFLPHE 373 (609)
T ss_dssp STTCCEEEEECSGG--G-GGGHHHHHHHHTSCCEECCEEECSSC-EEEECSCT---TSCGGGCCEEECTTSCEEEEEEGG
T ss_pred CCCCcEEEEEccCC--h-HHHHHHHHHHcCCCccccCcccccce-eeeeecCC---CCCcccCceeecCCcEEEEEEecc
Confidence 4664 4555566 2 34446666666677777 89999995 33321111 01112222 22333 445666532
Q ss_pred C---------------CccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEcc----CCcEEEEccc
Q 037622 396 N---------------GCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDE----DGYLYIVDRL 456 (560)
Q Consensus 396 ~---------------~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~ 456 (560)
+ ...|..|+.+||+++..+ |.|+ |++||+++++. ...+.|+||.
T Consensus 374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~ 436 (609)
T 4b2g_A 374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---GLYR--------------YRVGDILRVTGFHNSAPQFHFVRRK 436 (609)
T ss_dssp GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---SCCS--------------EEEEEEEEEEEEETTEEEEEEEEET
T ss_pred ccccccccCCCCccccHhHcCCCCeEEEehhhhh---hhhh--------------eecCCEEEEeecCCCCcEEEEEEec
Confidence 2 145788999999998652 3443 99999999974 3689999999
Q ss_pred cceeeecceecChHHHHHHHh
Q 037622 457 KEVIKYNGYQISPADLETVLI 477 (560)
Q Consensus 457 ~d~i~~~G~~v~~~~IE~~l~ 477 (560)
++++++.|+++++.+||+++.
T Consensus 437 ~~~l~~~Geki~~~~v~~av~ 457 (609)
T 4b2g_A 437 NVLLSIDSDKTDEAELQKAVD 457 (609)
T ss_dssp TCCBCSSSCCBCHHHHHHHHH
T ss_pred CCeEEccccCCCHHHHHHHHH
Confidence 999999999999999999987
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-09 Score=109.68 Aligned_cols=145 Identities=12% Similarity=0.045 Sum_probs=92.7
Q ss_pred CCccce--eecccCCCCHHHHHHHHHhCCCCeee-cccchhhcccccccCCCCCCCCcccccc-cccCC-eEEEEEeCCC
Q 037622 322 LKSLKQ--VSSGAAPANSKIIEDFVGAFPHVDFI-QGYGMTESTAVGTRGFNTKKFSKYFSVG-LLAPN-IQAKVVDWVN 396 (560)
Q Consensus 322 l~~lr~--~~~~g~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G-~~~p~-~~~~v~d~~~ 396 (560)
+++++. ++.+|.. ......++..+++.++. ..|++||. .++.-. .+ ...++..+ ..+|+ +-.+.+..++
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~--~p-~~~~~~~~~~L~p~~~ffEFiP~~~ 374 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANV--TP-RLSPEEATFAVIPNLGYFEFLPVSE 374 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTE-EEEECC--CT-TSCTTTCCEEECTTSCEEEEEEC--
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccce-eeeeec--CC-CCCccccceeecCCcEEEEEEeccc
Confidence 567752 3344422 33446666666678877 99999995 333211 11 11111112 23343 3445554222
Q ss_pred ----------CccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccC----CcEEEEccccceeee
Q 037622 397 ----------GCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDED----GYLYIVDRLKEVIKY 462 (560)
Q Consensus 397 ----------~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~----g~l~~~GR~~d~i~~ 462 (560)
...|..|+.+||++++.+ |.|+ |++||++++..- ..+.|+||.++++++
T Consensus 375 ~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~ 437 (581)
T 4epl_A 375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI 437 (581)
T ss_dssp -----CCCEEGGGCCTTCEEEEEEESTT---SCSS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS
T ss_pred ccCCCCceeeHHHcCCCCeEEEEEeecc---ceee--------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe
Confidence 146788999999998752 2222 999999999753 579999999999999
Q ss_pred cceecChHHHHHHHhc------CC--CcccEEEEc
Q 037622 463 NGYQISPADLETVLIC------HP--EILDVAVTG 489 (560)
Q Consensus 463 ~G~~v~~~~IE~~l~~------~~--~v~~~~v~~ 489 (560)
.|++++..+||+++.+ .. .|.|..+..
T Consensus 438 ~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~ 472 (581)
T 4epl_A 438 NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYI 472 (581)
T ss_dssp SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEE
T ss_pred eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEec
Confidence 9999999999999874 22 355666554
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=88.02 E-value=2.4 Score=42.15 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=68.5
Q ss_pred eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCC--ChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceE
Q 037622 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNS--IYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKIS 144 (560)
Q Consensus 67 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~ 144 (560)
.+|.+.+...+..++..+.. +|+.++|++...++.+ ...+...++++..|+.+++.+. .+.+.+...++..++ .
T Consensus 109 ~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~--t 184 (437)
T 2y27_A 109 GYTAADIDTWANLVARSIRA-AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRP--D 184 (437)
T ss_dssp EECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCC--S
T ss_pred ecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCC--C
Confidence 58999999888888887777 7999999999888864 2334557888999999987765 478888899999999 7
Q ss_pred EEEeeccchHHh
Q 037622 145 LAFTIYENVDKL 156 (560)
Q Consensus 145 ~v~~~~~~~~~~ 156 (560)
+++..+..+..+
T Consensus 185 ~l~~~Ps~~~~l 196 (437)
T 2y27_A 185 IIMVTPSYMLSI 196 (437)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEECHHHHHHH
Confidence 777776655544
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=87.46 E-value=2.7 Score=41.87 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=68.5
Q ss_pred eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCC--hHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceE
Q 037622 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSI--YFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKIS 144 (560)
Q Consensus 67 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~ 144 (560)
.+|.+.+...+..++..+.. +|+.++|++...++-+. ..+...++++..|+.+++.++ .+.+.+...++..++ .
T Consensus 111 ~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~--t 186 (443)
T 2y4o_A 111 GYTARDIDTWANVTARSIRA-AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEP--K 186 (443)
T ss_dssp EECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCC--S
T ss_pred ecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCC--c
Confidence 58999999888888887777 89999999998888643 334557888899999988775 478888899999999 7
Q ss_pred EEEeeccchHHh
Q 037622 145 LAFTIYENVDKL 156 (560)
Q Consensus 145 ~v~~~~~~~~~~ 156 (560)
++...+..+..+
T Consensus 187 ~l~~~Ps~~~~l 198 (443)
T 2y4o_A 187 IILVTPSYMLNL 198 (443)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEECHHHHHHH
Confidence 777766655444
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=86.46 E-value=3.1 Score=41.33 Aligned_cols=86 Identities=19% Similarity=0.025 Sum_probs=69.0
Q ss_pred eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCC--ChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceE
Q 037622 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNS--IYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKIS 144 (560)
Q Consensus 67 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~ 144 (560)
.+|.+.+...+..++..+.. .|+.++|++....+-+ ...+..+++++..|+.+++.++ .+.+.+...++..++ .
T Consensus 105 ~~th~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~--t 180 (436)
T 3qov_A 105 VHSQHDLDSWANLVARCLYM-VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKT--T 180 (436)
T ss_dssp EEEHHHHHHHHHHHHHHHHH-TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTC--C
T ss_pred EECHHHHHHHHHHHHHHHHH-cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCC--C
Confidence 58999999999888888877 7999999999988754 3344567888999999988765 477888889999999 8
Q ss_pred EEEeeccchHHh
Q 037622 145 LAFTIYENVDKL 156 (560)
Q Consensus 145 ~v~~~~~~~~~~ 156 (560)
+++..+.....+
T Consensus 181 ~~~~~P~~~~~l 192 (436)
T 3qov_A 181 ALHAIPSYAIRL 192 (436)
T ss_dssp EEECCHHHHHHH
T ss_pred EEEECHHHHHHH
Confidence 887777655544
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=80.75 E-value=9.3 Score=39.00 Aligned_cols=100 Identities=12% Similarity=0.014 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.++.+|++....| -.+|...+...+..++..+. ..++.++|++...++-...+- ..+++++..|+..+.
T Consensus 35 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~--~~Gv~~gd~V~i~~~~~~~~~--~~~la~~~~Gav~vp 103 (536)
T 3ni2_A 35 HSSKPCLINGANG-------DVYTYADVELTARRVASGLN--KIGIQQGDVIMLFLPSSPEFV--LAFLGASHRGAIITA 103 (536)
T ss_dssp STTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSSHHHH--HHHHHHHHHTCEEEE
T ss_pred CCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCcHHHH--HHHHHHHHhCCEEec
Confidence 4677777653322 24789998888887776554 367889999999998765433 478889999999998
Q ss_pred eCC-cCHHHHHHHHHHhCcceeccCcHHHHHH
Q 037622 280 MRR-FEASEMLKVIDKYGVTHFPVVPPILMAL 310 (560)
Q Consensus 280 ~~~-~~~~~~~~~l~~~~~t~l~~~P~~~~~l 310 (560)
.++ ...+++...+++.++..++..+.....+
T Consensus 104 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 104 ANPFSTPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp CCTTCCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred cCCCCCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 875 6788999999999999999887655544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 560 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-122 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 1e-108 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 1e-107 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-101 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 6e-87 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 8e-85 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 3e-83 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 372 bits (957), Expect = e-122
Identities = 118/536 (22%), Positives = 213/536 (39%), Gaps = 39/536 (7%)
Query: 52 KHNGRTALV----DSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFP 107
++ RTA++ D+ ISY +L V A+ L GI +GD V + +P
Sbjct: 84 ENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDL-GIKKGDVVAIYMPMVPEAA 142
Query: 108 VIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISL----------AFTIYENVDKLR 157
V LA +GA+ + S + + +++ + + + +NVD
Sbjct: 143 VAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDAL 202
Query: 158 SWGTTP-----VVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSG 212
+V D++EGR + LI + + +D ILY+SG
Sbjct: 203 KNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSG 262
Query: 213 TTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLS 272
+TG KG T G ++ ++ ++ + + G S G L+
Sbjct: 263 STGKPKGVLHTTGGYLVYAATTFKYVFD----YHPGDIYWCTADVGWVTGHSYLLYGPLA 318
Query: 273 LGPSVVVM----RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAA-KGLCGNSLKSLKQ 327
G + ++ + M +V+DK+ V P + AL K + G SL+
Sbjct: 319 CGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRI 378
Query: 328 VSSGAAPANSKIIEDFVGAF--PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAP 385
+ S P N + E + + + TE+ K S
Sbjct: 379 LGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFF 438
Query: 386 NIQAKVVDWVNGCFLPPGSTGELWLRG--PGTMKEYINNADATMSTIDK--EGWLHTGDI 441
+Q +VD G + G L + PG + + + T + +GD
Sbjct: 439 GVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDG 497
Query: 442 AYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVA 501
A DEDGY +I R+ +V+ +G+++ A++E+ L+ HP+I + AV G + G+ A
Sbjct: 498 ARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 557
Query: 502 FVVRRDGSTLTE---AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
+V G + A V +++ + + P + +T S+PK+ +GK++RR LRK
Sbjct: 558 YVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRK 613
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 336 bits (861), Expect = e-108
Identities = 134/605 (22%), Positives = 244/605 (40%), Gaps = 57/605 (9%)
Query: 2 EKFLQTFSSERINTSQWYSPETGIYHSKHPSVNLPANDSLLDVDSFI-FSH--------K 52
KF + +++ +N W P ++ + ++ ++ + + K
Sbjct: 15 AKFFGSKATQFLN---WSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHALK 71
Query: 53 HNGRTALV----DSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPV 108
+ A++ + GYSI+Y +L V VA L + G+ +GD V + +P +
Sbjct: 72 TPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAII 131
Query: 109 IFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTK--------------ISLAFTIYENVD 154
LA+ +GAI + S + ++ ++ +K I + + +
Sbjct: 132 TLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALR 191
Query: 155 KLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTT 214
+ V N F R D+ + +D +LY+SG+T
Sbjct: 192 ETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGST 251
Query: 215 GASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLG 274
GA KG + + ++ L +R+ E VF + I G + G L G
Sbjct: 252 GAPKGVQHSTAGYLLGALLTMRY----TFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYG 307
Query: 275 PSVVVMRRFE----ASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGN-SLKSLKQVS 329
+ +V S +ID++ VT F V P L L +A N SLKSL+ +
Sbjct: 308 CATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLG 367
Query: 330 SGAAPANSKIIEDFVGAFPH--VDFIQGYGMTESTAVGTRGFNTKKFS-KYFSVGLLAPN 386
S P +++ E + + + Y TES + K S
Sbjct: 368 SVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFG 427
Query: 387 IQAKVVDWVNGCFLPPGST-GELWLRG--PGTMKEYINNADATMSTI--DKEGWLHTGDI 441
I A V+D G L G L ++ P + N D + T G+ TGD
Sbjct: 428 IDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDG 487
Query: 442 AYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVA 501
A D+DGY++I+ R+ +V+ +G+++S A++E +I P + + AV G D + G+ A
Sbjct: 488 AAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAA 547
Query: 502 FVVRRDGSTLTEAA----------VIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRE 551
FVV ++ S+ + A ++ + + + P+ + ++ +PK+ +GK++RR
Sbjct: 548 FVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRI 607
Query: 552 LRKFL 556
LRK L
Sbjct: 608 LRKIL 612
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 329 bits (845), Expect = e-107
Identities = 159/510 (31%), Positives = 254/510 (49%), Gaps = 16/510 (3%)
Query: 55 GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114
G A D+ +I+Y + F + +A ++ + G++ +++ NS+ F + L L
Sbjct: 35 GTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRY-GLNTNHRIVVCSENSLQFFMPVLGAL 93
Query: 115 YLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVND 174
++G V P N + + E+ + + + + + + L P++ + +
Sbjct: 94 FIGVAVAPANDIYNERELLNSMNISQPTV-VFVSKKGLQKILNVQKKLPIIQKIIIMDSK 152
Query: 175 FKEGRFSDFHKLIA-------GKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNF 227
F + + ++D V R + A I+ SSG+TG KG L H
Sbjct: 153 TDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTA 212
Query: 228 IAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASE 287
+ + + L+V+P H +G+ LG L G VV+M RFE
Sbjct: 213 CVRFSHA--RDPIFGNQIIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEEL 269
Query: 288 MLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAF 347
L+ + Y + +VP + K+ + L +L +++SG AP + ++ E F
Sbjct: 270 FLRSLQDYKIQSALLVPTLFSFFAKSTL-IDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 328
Query: 348 PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGE 407
QGYG+TE+T+ + K +VG + P +AKVVD G L GE
Sbjct: 329 HLPGIRQGYGLTETTSAIL--ITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGE 386
Query: 408 LWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQI 467
L +RGP M Y+NN +AT + IDK+GWLH+GDIAY+DED + +IVDRLK +IKY GYQ+
Sbjct: 387 LCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 446
Query: 468 SPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPY 527
+PA+LE++L+ HP I D V G D GE+P A VV G T+TE ++DY+A +V
Sbjct: 447 APAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTA 506
Query: 528 KKVR-RVVFTKSIPKSAAGKVLRRELRKFL 556
KK+R VVF +PK GK+ R++R+ L
Sbjct: 507 KKLRGGVVFVDEVPKGLTGKLDARKIREIL 536
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 315 bits (807), Expect = e-101
Identities = 141/541 (26%), Positives = 232/541 (42%), Gaps = 35/541 (6%)
Query: 31 PSVNLPANDSLLDVDSFIFSH---KHNGRTALVDSLSG--YSISYPQLFPLVQSVASGLR 85
PS + +L D + + +G + +Y +++ + + GLR
Sbjct: 3 PSTMMDEELNLWD----FLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLR 58
Query: 86 HHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISL 145
G+ GD V L N + A+ +GA++ NP LS EI + + K+ L
Sbjct: 59 AL-GVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLL 117
Query: 146 -AFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDT 204
+ V+ +R T V E + + + + ++
Sbjct: 118 FDPNLLPLVEAIRGELKTVQHFV------VMDEKAPEGYLAYEEALGEEADPVRVPERAA 171
Query: 205 AAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLS 264
+ Y++GTTG KG +H + + + + V L V+PMFH+
Sbjct: 172 CGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSE---KDVVLPVVPMFHVNAWC 228
Query: 265 LFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKS 324
L L V+ R + + ++++ D GVT VP + +AL G+ LK+
Sbjct: 229 LPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY-LESTGHRLKT 287
Query: 325 LKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGF---------NTKKFS 375
L+++ G + A +I F V QGYG+TE++ V + F +K +
Sbjct: 288 LRRLVVGGSAAPRSLIARFERMGVEV--RQGYGLTETSPVVVQNFVKSHLESLSEEEKLT 345
Query: 376 KYFSVGLLAPNIQAKVVDWVNGCFLPP--GSTGELWLRGPGTMKEYINNADATMSTIDKE 433
GL P ++ +V D G +P + GE+ L+GP Y N +AT S + +
Sbjct: 346 LKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPD 404
Query: 434 GWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDK 493
G+ TGDIA +DE+GY+ I DRLK++IK G IS DLE L+ HP++ + AV
Sbjct: 405 GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHP 464
Query: 494 VLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
E P+A VV R E L A ++ VF + IP+++AGK L+R LR
Sbjct: 465 KWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALR 524
Query: 554 K 554
+
Sbjct: 525 E 525
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 277 bits (708), Expect = 6e-87
Identities = 130/510 (25%), Positives = 212/510 (41%), Gaps = 14/510 (2%)
Query: 52 KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
K+ R A+ SY +L +A+G + GI Q D V++ LPN F +
Sbjct: 37 KYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKL-GIQQKDRVVVQLPNIKEFFEVIF 93
Query: 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENL 171
AL LGA+ + P SEI + + Y D V + L
Sbjct: 94 ALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLA--RQVQSKLPTL 151
Query: 172 VNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAV 231
N G +F L + V+ P ++ D A + S G+TG SK TH ++I
Sbjct: 152 KNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIY-- 209
Query: 232 ELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKV 291
++ S A+ + S LG+L G VV+ + +
Sbjct: 210 --SLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL 267
Query: 292 IDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVD 351
I++ VT +VPP+ M AA + SL+ + G A +++ A
Sbjct: 268 IEREKVTITALVPPLAMVWMDAASSRRDDL-SSLQVLQVGGAKFSAEAARRVK-AVFGCT 325
Query: 352 FIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLR 411
Q +GM E V + + + G V + + PG TG L R
Sbjct: 326 LQQVFGMAEGL-VNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTR 384
Query: 412 GPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPAD 471
GP T++ Y + ++ ++G+ TGDI DGY+ + R K+ I G +++ +
Sbjct: 385 GPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEE 444
Query: 472 LETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQR-VAPYKKV 530
+E L+ HP + D A+ D+ LGE F++ RD + A + +L +R +A YK
Sbjct: 445 VENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA-PKAAELKAFLRERGLAAYKIP 503
Query: 531 RRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560
RV F +S P++ GKV ++ LR+ ++ KL
Sbjct: 504 DRVEFVESFPQTGVGKVSKKALREAISEKL 533
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 270 bits (692), Expect = 8e-85
Identities = 89/532 (16%), Positives = 188/532 (35%), Gaps = 51/532 (9%)
Query: 33 VNLPANDSLLDVDSFIFSH---KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFG 89
P + ++ +F K A+V ++Y +L +A G
Sbjct: 17 AEYPRDKTIHQ----LFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIEK-G 69
Query: 90 ISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTI 149
I + V +++ SI + LA+L G +P++ I+ L ++ + T
Sbjct: 70 IGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYI--LDDSQARMLLTQ 127
Query: 150 YENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILY 209
V + + V + E +EG + D A ++Y
Sbjct: 128 KHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLH--------------VPSKSTDLAYVIY 173
Query: 210 SSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALG 269
+SGTTG KG L H ++ ++ + + + +
Sbjct: 174 TSGTTGNPKGTMLEHKGIS-----NLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMA 228
Query: 270 LLSLGPSVVVMR--RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQ 327
LL+ ++++ + + + I++ +T + P ++ L + S++
Sbjct: 229 LLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVV-------HLDPERILSIQT 281
Query: 328 VSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNI 387
+ + + + ++ + V +I YG TE+T T TK+ +
Sbjct: 282 LITAGSATSPSLVNKW---KEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQN 338
Query: 388 QAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI------DKEGWLHTGDI 441
+ N G GEL + G G + Y + T E TGD
Sbjct: 339 TQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ 398
Query: 442 AYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVA 501
A + DG + + R+ +K G+++ ++E++L+ H I + AV+ D A
Sbjct: 399 ARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCA 458
Query: 502 FVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
+ V + + + ++ + Y + +P ++ GK+ R++L
Sbjct: 459 YFVSEKH--IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLP 508
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 266 bits (680), Expect = 3e-83
Identities = 120/506 (23%), Positives = 207/506 (40%), Gaps = 22/506 (4%)
Query: 52 KHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
+ AL G +++ +L V++VA+ L G+ V ++ PNS + L
Sbjct: 14 RAPDHCALAVPARGLRLTHAELRARVEAVAARLHAD-GLRPQQRVAVVAPNSADVVIAIL 72
Query: 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENL 171
AL LGA+ +NP L +E+ + + + ++ + D + G+ + +L
Sbjct: 73 ALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDL 132
Query: 172 VNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAV 231
V D + + +E P A I Y+SGTTG K A + + V
Sbjct: 133 VRDGEPYSYGP----------PIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRV 182
Query: 232 ELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKV 291
V L ++P++H+ G + L+L + VV+ F + L++
Sbjct: 183 LFM---STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQL 239
Query: 292 IDKYGVTHFPVVPPILMALTKAA-KGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHV 350
+ + VT P L AL AA L SL+ V+ A ++E P
Sbjct: 240 VQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG- 298
Query: 351 DFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGEL-W 409
+ + YG TE+ + + + G GEL
Sbjct: 299 EKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIV---RIGGGVDEIVANGEEGELIV 355
Query: 410 LRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISP 469
Y+N AT + ++GW T D+A + +G + I+ R+ ++I G I P
Sbjct: 356 AASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP 414
Query: 470 ADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL-AQRVAPYK 528
+++E VL P + +V V G D+ G+ A VV R G TL+ A+ + + +A +K
Sbjct: 415 SEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFK 474
Query: 529 KVRRVVFTKSIPKSAAGKVLRRELRK 554
+ +R +PK+A KVLRR+L +
Sbjct: 475 RPKRYFILDQLPKNALNKVLRRQLVQ 500
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 560 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 86.48 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 83.43 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 82.3 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=9e-83 Score=680.89 Aligned_cols=544 Identities=23% Similarity=0.318 Sum_probs=450.9
Q ss_pred hhhhhhccCCCCCCCCCCCCCCceeccC----CCCCCCCCCCCCCCHHHHHh-ccC--CCCceEEEEC----CCCceecH
Q 037622 2 EKFLQTFSSERINTSQWYSPETGIYHSK----HPSVNLPANDSLLDVDSFIF-SHK--HNGRTALVDS----LSGYSISY 70 (560)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~a~~~~----~~~~~~Ty 70 (560)
|.||.+.+.. ..|..+..++.... .+...|.. +..+|+.+.+. +++ +++++|++.. .+.+++||
T Consensus 32 ~~fW~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~wf~-~~~~N~~~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY 106 (643)
T d1pg4a_ 32 DTFWGEQGKI----LDWITPYQKVKNTSFAPGNVSIKWYE-DGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISY 106 (643)
T ss_dssp HHHHHHHGGG----SCCSBCCSCCEEEECCTTCCEEEEST-TCEECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEH
T ss_pred HHHHHHHHhh----eeEECCCcccccCccCCCCCCCeeCC-CChhhHHHHHHHHHHHhCCCCEEEEEEecCCCCceEEeH
Confidence 5788877743 67988888876442 12344665 67789887655 332 4679999842 22368999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeec
Q 037622 71 PQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIY 150 (560)
Q Consensus 71 ~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~ 150 (560)
+||.++|+++|++|.+ +|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.+++ +++++++
T Consensus 107 ~eL~~~v~~~A~~L~~-~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~--~~li~~~ 183 (643)
T d1pg4a_ 107 RELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSS--RLVITAD 183 (643)
T ss_dssp HHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTC--SEEEEES
T ss_pred HHHHHHHHHHHHHHHH-cCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCC--CEEEEcc
Confidence 9999999999999999 899999999999999999999999999999999999999999999999999999 8888776
Q ss_pred cchHH---------h---hhc---CC-CCEEEecCCCcc-cccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCC
Q 037622 151 ENVDK---------L---RSW---GT-TPVVAVPENLVN-DFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGT 213 (560)
Q Consensus 151 ~~~~~---------~---~~~---~~-~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGT 213 (560)
..... . ... .. ..++++...... ..........................+++++++|+|||||
T Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGT 263 (643)
T d1pg4a_ 184 EGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGS 263 (643)
T ss_dssp EEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCS
T ss_pred hhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccccccccchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCc
Confidence 43211 1 110 11 234444433211 1111222334444444444455556788999999999999
Q ss_pred CCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC----cCHHHHH
Q 037622 214 TGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR----FEASEML 289 (560)
Q Consensus 214 TG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~ 289 (560)
||.||||+++|++++......... ...++++|++++..|++|++++...++.+|+.|+++++++. +++..++
T Consensus 264 TG~PKgV~~sh~~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~ 339 (643)
T d1pg4a_ 264 TGKPKGVLHTTGGYLVYAATTFKY----VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 339 (643)
T ss_dssp SSSCEEEEEESHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHH
T ss_pred ccCCCEEEEccHHHHHHHHHHHHH----hhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHH
Confidence 999999999999977655443331 35688999999999999999987778899999999999764 4789999
Q ss_pred HHHHHhCcceeccCcHHHHHHHHhhh-ccCCCCCCccceeecccCCCCHHHHHHHHHhCC--CCeeecccchhhcccccc
Q 037622 290 KVIDKYGVTHFPVVPPILMALTKAAK-GLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP--HVDFIQGYGMTESTAVGT 366 (560)
Q Consensus 290 ~~l~~~~~t~l~~~P~~~~~l~~~~~-~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~ 366 (560)
+.++++++|+++++|++++.|.+... .....++++||.++++|+++++++++++.+.++ ++++++.||+||+|++++
T Consensus 340 ~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~ 419 (643)
T d1pg4a_ 340 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMI 419 (643)
T ss_dssp HHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSB
T ss_pred HHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEE
Confidence 99999999999999999999987532 234567899999999999999999999999984 578999999999998777
Q ss_pred cCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEec--ccchhhhcCCchhhhhcc--CCCCceecCceE
Q 037622 367 RGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG--PGTMKEYINNADATMSTI--DKEGWLHTGDIA 442 (560)
Q Consensus 367 ~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~--~~~~~~~TGD~~ 442 (560)
.........+.+++|+|+||++++++| +++++++.|+.|||+|+| |+++.||+++++.+.+.+ ..+|||+|||+|
T Consensus 420 ~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~ 498 (643)
T d1pg4a_ 420 TPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGA 498 (643)
T ss_dssp CCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEE
T ss_pred ecCCCccCCCCCccccccCCCEEEEEC-CCCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEE
Confidence 654444456789999999999999999 678999999999999999 578899999998877654 357899999999
Q ss_pred EEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCH---HHHHHH
Q 037622 443 YFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTE---AAVIDY 519 (560)
Q Consensus 443 ~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~ 519 (560)
++|+||+++++||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.++++|++.++...+. ++|+++
T Consensus 499 ~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~i~~~ 578 (643)
T d1pg4a_ 499 RRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNW 578 (643)
T ss_dssp EECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred EECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998876665 489999
Q ss_pred HHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 520 LAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 520 ~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
|+++|+++++|+.|+++++||+|++|||+|++||+.++.
T Consensus 579 ~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~ 617 (643)
T d1pg4a_ 579 VRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAG 617 (643)
T ss_dssp HHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHT
T ss_pred HHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhcC
Confidence 999999999999999999999999999999999998865
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-79 Score=657.40 Aligned_cols=548 Identities=24% Similarity=0.321 Sum_probs=434.6
Q ss_pred hhhhhhccCCCCCCCCCCCCCCceeccC-------CCCCCCCCCCCCCCHHHH-HhccC--CCCceEEEEC----CCCce
Q 037622 2 EKFLQTFSSERINTSQWYSPETGIYHSK-------HPSVNLPANDSLLDVDSF-IFSHK--HNGRTALVDS----LSGYS 67 (560)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~a~~~~----~~~~~ 67 (560)
|+||.....+. ..|.++.++++... .+...|.. +..+|+.+. +.+++ +++++|++.. .++++
T Consensus 15 ~~Fw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~wf~-~~~lN~~~n~ldr~a~~~pd~~Ali~~~~~~g~~~~ 90 (640)
T d1ry2a_ 15 AKFFGSKATQF---LNWSKPFDKVFIPDPKTGRPSFQNNAWFL-NGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYS 90 (640)
T ss_dssp HHHHHHHHHHH---CCEEECCSCSBCBCSSSCSBCSTTCCBST-TCEECHHHHHTHHHHTTCTTSEEEEEECSSTTCCEE
T ss_pred HHHHHHHHHhh---eeEecCCeEeeccCCccCCCCCCCCcCCC-CCchhHHHHHHHHHHhhCCCCEEEEEEecCCCCeeE
Confidence 57887765543 56888887776331 23334555 566787554 44443 4679999842 23479
Q ss_pred ecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEE
Q 037622 68 ISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAF 147 (560)
Q Consensus 68 ~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~ 147 (560)
+||+||.++++++|++|+..+|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.+++ ++++
T Consensus 91 ~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~--~~~~ 168 (640)
T d1ry2a_ 91 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDS--KVVI 168 (640)
T ss_dssp EEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTC--SEEE
T ss_pred EeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhc--cccc
Confidence 99999999999999999743799999999999999999999999999999999999999999999999999999 8888
Q ss_pred eeccchH---------HhhhcCC-----CCEEEecCCCcccc--cCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCC
Q 037622 148 TIYENVD---------KLRSWGT-----TPVVAVPENLVNDF--KEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSS 211 (560)
Q Consensus 148 ~~~~~~~---------~~~~~~~-----~~vi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 211 (560)
++..... .+..... .............. .........................++++++|+|||
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS 248 (640)
T d1ry2a_ 169 TTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTS 248 (640)
T ss_dssp EESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEEC
T ss_pred cchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccccccccccccccccccccccccCCcccccCCEEEECC
Confidence 7764321 1111111 11222211111110 111112222222333333444556778999999999
Q ss_pred CCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC----cCHHH
Q 037622 212 GTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR----FEASE 287 (560)
Q Consensus 212 GTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~ 287 (560)
||||.||||+++|.+++.+....... ...+.++|++++.+|++|++|....++.++..|+++++.+. .++..
T Consensus 249 GTTG~PKgV~~~h~~~~~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 324 (640)
T d1ry2a_ 249 GSTGAPKGVQHSTAGYLLGALLTMRY----TFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSR 324 (640)
T ss_dssp CSSSSCEEEEECSHHHHHHHHHHHHH----HSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTH
T ss_pred CCCCCCcceeeccccHHHHHHHHHHh----hcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHH
Confidence 99999999999999988766555432 35688999999999999999987788899999999988764 37899
Q ss_pred HHHHHHHhCcceeccCcHHHHHHHHhhh-ccCCCCCCccceeecccCCCCHHHHHHHHHhCC--CCeeecccchhhcccc
Q 037622 288 MLKVIDKYGVTHFPVVPPILMALTKAAK-GLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP--HVDFIQGYGMTESTAV 364 (560)
Q Consensus 288 ~~~~l~~~~~t~l~~~P~~~~~l~~~~~-~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~--~~~i~~~YG~tE~~~~ 364 (560)
+++.++++++|++.++|++++.|.+... .....++++||.+++||+++++++.+++.+.++ ...+++.||+||++..
T Consensus 325 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~ 404 (640)
T d1ry2a_ 325 YWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSH 404 (640)
T ss_dssp HHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSC
T ss_pred HHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccc
Confidence 9999999999999999999999876522 234567899999999999999999999999985 3569999999999987
Q ss_pred cccCCCCC-CCCcccccccccCCeEEEEEeCCCCccC-CCCCcceEEEec--ccchhhhcCCchhhhhcc--CCCCceec
Q 037622 365 GTRGFNTK-KFSKYFSVGLLAPNIQAKVVDWVNGCFL-PPGSTGELWLRG--PGTMKEYINNADATMSTI--DKEGWLHT 438 (560)
Q Consensus 365 ~~~~~~~~-~~~~~~~~G~~~p~~~~~v~d~~~~~~~-~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~--~~~~~~~T 438 (560)
........ ...+++++|+|+||++++|+|++++..+ +.+..|||++++ |+++.||+++++.+.+.+ +.+|||+|
T Consensus 405 ~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~T 484 (640)
T d1ry2a_ 405 LVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFT 484 (640)
T ss_dssp SEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEE
T ss_pred cccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEc
Confidence 65544332 3456789999999999999997666554 456679999998 689999999999998876 45699999
Q ss_pred CceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCC------
Q 037622 439 GDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLT------ 512 (560)
Q Consensus 439 GD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~------ 512 (560)
||+|++|+||+++++||+||+||.+|++|+|.|||++|.+||.|.+|+|++.+++..|+.++++|++.++....
T Consensus 485 GDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~ 564 (640)
T d1ry2a_ 485 GDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDE 564 (640)
T ss_dssp EEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------
T ss_pred CCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987764322
Q ss_pred ----HHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 513 ----EAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 513 ----~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
.++++++++++|++|++|+.|+++++||+|++|||+|++||+.++++
T Consensus 565 ~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~ 615 (640)
T d1ry2a_ 565 LQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 615 (640)
T ss_dssp CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhCC
Confidence 35788999999999999999999999999999999999999987653
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=1.8e-77 Score=632.19 Aligned_cols=519 Identities=31% Similarity=0.503 Sum_probs=427.1
Q ss_pred ceeccCCCCCCCCCCCCCCCHHHHHhccCC-----CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEE
Q 037622 24 GIYHSKHPSVNLPANDSLLDVDSFIFSHKH-----NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLL 98 (560)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i 98 (560)
+|-.+|.|..+++. .|++++|.+.++ ++.+|+++...++++||+||++++.++|++|.+ +|+++||+|+|
T Consensus 3 ~~~~~p~p~~p~~~----~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~-~Gi~~Gd~Vai 77 (541)
T d1lcia_ 3 NIKKGPAPFYPLED----GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTNHRIVV 77 (541)
T ss_dssp TSEECCCCSSCCCS----SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEE
T ss_pred CCCcCCCCCCCCCC----CCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHH-cCcCCCCEEEE
Confidence 34556667666665 789988876664 567899998777899999999999999999998 89999999999
Q ss_pred EcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC----CC-CEEEecCCCcc
Q 037622 99 LLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG----TT-PVVAVPENLVN 173 (560)
Q Consensus 99 ~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~----~~-~vi~~~~~~~~ 173 (560)
+++|++++++++|||+++|++++|+++.++.+++.++++.+++ ++++++++..+.+.+.. .. .+++++... +
T Consensus 78 ~~~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 154 (541)
T d1lcia_ 78 CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQP--TVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT-D 154 (541)
T ss_dssp ECSSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCC--SEEEECGGGHHHHHHHHHHCTTCCEEEETTCSS-C
T ss_pred EeCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccc--eEEeeeccccccchhccccccccceeeeecCCc-c
Confidence 9999999999999999999999999999999999999999999 99999988776654432 22 334433321 1
Q ss_pred cccCCCcccHHHhhccc-------CCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCC
Q 037622 174 DFKEGRFSDFHKLIAGK-------FDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLS 246 (560)
Q Consensus 174 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~ 246 (560)
......+....... ..........++++++|+|||||||.||+|+++|++++........... .....
T Consensus 155 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~--~~~~~ 229 (541)
T d1lcia_ 155 ---YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--GNQII 229 (541)
T ss_dssp ---BTTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT--SCCCC
T ss_pred ---ccccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcc--ccccc
Confidence 12222222222111 1112233445689999999999999999999999999877665543211 34567
Q ss_pred CCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccc
Q 037622 247 SEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLK 326 (560)
Q Consensus 247 ~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr 326 (560)
+.+++++++|++|..+.. ..+..+..++..+.....+....+..+.++++|.+.++|..+..+... ......+++++|
T Consensus 230 ~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~-~~~~~~~~~~l~ 307 (541)
T d1lcia_ 230 PDTAILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS-TLIDKYDLSNLH 307 (541)
T ss_dssp TTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHC-SCGGGSCCTTCC
T ss_pred cccccccccccccccccc-ccccccccccccccccccccchhHHHHhhhhccccccCcccccccccc-ccccccccccce
Confidence 899999999999999985 666777788888888888999999999999999999999999999876 455566789999
Q ss_pred eeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcc
Q 037622 327 QVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTG 406 (560)
Q Consensus 327 ~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~G 406 (560)
.+++||+++++.+.+++.+.++...+++.||+||++..++..... ..+++++|+|+||++++|+|++++++++.|+.|
T Consensus 308 ~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~G 385 (541)
T d1lcia_ 308 EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRG 385 (541)
T ss_dssp EEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC-----CCCCBEECTTCEEEEECTTTCCBCCTTCCE
T ss_pred EEEecccccccccccccccccCCceeeecCCccccCceEEecCcc--cCCCCccccccCCCEEEEEECCCCcCCCCCCeE
Confidence 999999999999999999999667899999999999887765443 356789999999999999999899999999999
Q ss_pred eEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEE
Q 037622 407 ELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVA 486 (560)
Q Consensus 407 el~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~ 486 (560)
||+|+|++++.||+++++.+...+..++||+|||+|+++++|.+++.||.+|+||++|++|+|.+||++|.++|+|.+|+
T Consensus 386 el~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~ 465 (541)
T d1lcia_ 386 ELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAG 465 (541)
T ss_dssp EEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEE
T ss_pred EEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEE
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCC-CcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 487 VTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYK-KVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 487 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~-~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
|++.+++..|+.++++|++.++...+.++++++|+++|++++ .|..|+++++||+|++|||+|++||+++.++
T Consensus 466 v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~~ 539 (541)
T d1lcia_ 466 VAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKA 539 (541)
T ss_dssp EEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHhCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHHh
Confidence 999999988999999999998888999999999999998775 7899999999999999999999999998763
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.6e-75 Score=616.01 Aligned_cols=503 Identities=27% Similarity=0.401 Sum_probs=382.8
Q ss_pred CCCCCHHHHHhccCC--CCceEEEECCCC--ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHH
Q 037622 39 DSLLDVDSFIFSHKH--NGRTALVDSLSG--YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114 (560)
Q Consensus 39 ~~~~~~~~~~~~~~~--~~~~a~~~~~~~--~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~ 114 (560)
|...|+.++|.+.++ ++++|+++..++ +++||+||+++++++|++|.+ .|+++||+|+|+++|++++++++|||+
T Consensus 8 ~~~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 86 (534)
T d1v25a_ 8 DEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAYFAVP 86 (534)
T ss_dssp CCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHH-CCcCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 445799999988765 779999986554 479999999999999999999 799999999999999999999999999
Q ss_pred HhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC----CCEEEecCCCcccccCCCcccHHHhhccc
Q 037622 115 YLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT----TPVVAVPENLVNDFKEGRFSDFHKLIAGK 190 (560)
Q Consensus 115 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (560)
++|++++|++|.++.+++.++++.+++ +.++++............ ........... ........ ...
T Consensus 87 ~~G~v~vpl~~~~~~~~l~~~l~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~ 157 (534)
T d1v25a_ 87 GMGAVLHTANPRLSPKEIAYILNHAED--KVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKA----PEGYLAYE---EAL 157 (534)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTC--SEEEECGGGHHHHHHHGGGCSSCCEEEESSSCC----CTTCEEHH---HHC
T ss_pred HhCcEEEecCCCCCHHHHHHHHHhhcc--ccccccchhhhhHHHHhhcccccceeEEeeccc----cccccccc---ccc
Confidence 999999999999999999999999999 889988877665544322 22222222110 01111111 111
Q ss_pred CCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHH
Q 037622 191 FDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGL 270 (560)
Q Consensus 191 ~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~ 270 (560)
..........++++++++|||||||.||+|+++|.++........... .......+++++.+|++|..++...+. +
T Consensus 158 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~~~~~~~~-~ 233 (534)
T d1v25a_ 158 GEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD---GTALSEKDVVLPVVPMFHVNAWCLPYA-A 233 (534)
T ss_dssp CSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTT---TTCCCTTCEEEECSCTTSHHHHTHHHH-H
T ss_pred cccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhc---ccccccccccccccchhhhccccccce-e
Confidence 122223345678999999999999999999999999987655443321 456678999999999999999975554 4
Q ss_pred hhCCCEEEEe-CCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCC
Q 037622 271 LSLGPSVVVM-RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPH 349 (560)
Q Consensus 271 l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~ 349 (560)
+..|+++++. +.+++..++..+.++++|++.++|+++..++.. .......+++||.+++||+++++.+.+.+.+. +
T Consensus 234 ~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~-~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--~ 310 (534)
T d1v25a_ 234 TLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY-LESTGHRLKTLRRLVVGGSAAPRSLIARFERM--G 310 (534)
T ss_dssp HHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHH-HHHHTCCCSSCCEEEECSSCCCHHHHHHHHHT--T
T ss_pred eeecceeeeccccccccccchhhhhccccccccCchhhhhhhhh-hccccccccceeEEEEecCCCCHHHHHHHHHh--C
Confidence 5555555554 568999999999999999999999999999877 44556788999999999999999999998865 7
Q ss_pred CeeecccchhhcccccccCCCCCC---------CCcccccccccCCeEEEEEeCCCCccCCC--CCcceEEEecccchhh
Q 037622 350 VDFIQGYGMTESTAVGTRGFNTKK---------FSKYFSVGLLAPNIQAKVVDWVNGCFLPP--GSTGELWLRGPGTMKE 418 (560)
Q Consensus 350 ~~i~~~YG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~p~~~~~v~d~~~~~~~~~--g~~Gel~v~~~~~~~g 418 (560)
.++++.||+||++.+++....... ....+++|+|+||++++|+| +++++++. |+.|||+|+|++++.|
T Consensus 311 ~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~g 389 (534)
T d1v25a_ 311 VEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGG 389 (534)
T ss_dssp CEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSS
T ss_pred CeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccce
Confidence 899999999999998776543221 12346899999999999999 56777765 6799999999999999
Q ss_pred hcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCce
Q 037622 419 YINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEI 498 (560)
Q Consensus 419 y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~ 498 (560)
|+++++.+...+..+|||+|||+|++++||.+++.||.+|+||.+|++|+|.+||++|.+||+|.+++|++.+++..++.
T Consensus 390 Y~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~ 469 (534)
T d1v25a_ 390 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQER 469 (534)
T ss_dssp CBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEE
T ss_pred ecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 499 PVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 499 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
++++|++..+....++.+++.+++.|++|++|+.|+++++||+|++|||+|++||++|.+.
T Consensus 470 l~a~vv~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~~ 530 (534)
T d1v25a_ 470 PLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 530 (534)
T ss_dssp EEECC-------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHhcCCcCCCccEEEEECCCCCCCCccccHHHHHHHHHhh
Confidence 9999988766444444444457888999999999999999999999999999999998763
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.9e-73 Score=600.73 Aligned_cols=517 Identities=26% Similarity=0.359 Sum_probs=430.4
Q ss_pred CCCCCCC-CceeccCCCCCCCCCCCCCCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCC
Q 037622 16 SQWYSPE-TGIYHSKHPSVNLPANDSLLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQ 92 (560)
Q Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~ 92 (560)
..||.|+ +...+.....-.|+. .|++++|.++++ ++++|++++ ++++||+||+++++++|++|.+ +|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~----~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~el~~~v~~~A~~L~~-~Gv~~ 74 (536)
T d1mdba_ 2 LKGFTPWPDELAETYRKNGCWAG----ETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQ 74 (536)
T ss_dssp CTTCCCCCHHHHHHHHHTTSSCS----CCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HTCCT
T ss_pred CCCCCCCCHHHHHHHHHcCCCCC----CCHHHHHHHHHHHCCCCeEEEEC--CEeEcHHHHHHHHHHHHHHHHH-cCcCC
Confidence 4566666 332222112223543 699999999985 679999997 7899999999999999999998 79999
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhh--------hc-CC-C
Q 037622 93 GDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLR--------SW-GT-T 162 (560)
Q Consensus 93 gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~--------~~-~~-~ 162 (560)
||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++.+++ +.+++++....... .. .. .
T Consensus 75 gd~V~i~~~n~~~~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (536)
T d1mdba_ 75 KDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEA--AAYIIPDAYSGFDYRSLARQVQSKLPTLK 152 (536)
T ss_dssp TCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTC--SEEEEESEETTEEHHHHHHHHHHHCTTCC
T ss_pred cCEEEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhcc--ceEeccchhhhhhhhhhhhhhhhcccccc
Confidence 9999999999999999999999999999999999999999999999999 77777654321110 00 00 1
Q ss_pred CEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhccc
Q 037622 163 PVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQY 242 (560)
Q Consensus 163 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~ 242 (560)
..+.... ......+. .........+...++|+++|+|||||||.||+|++||.++...+..... .
T Consensus 153 ~~~~~~~-------~~~~~~~~---~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~-----~ 217 (536)
T d1mdba_ 153 NIIVAGE-------AEEFLPLE---DLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE-----V 217 (536)
T ss_dssp CEEEESC-------CTTSEEGG---GCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH-----H
T ss_pred ceeeeec-------cccccchh---hcccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccc-----c
Confidence 1111111 11111111 1122233344567899999999999999999999999999998887776 5
Q ss_pred ccCCCCcEEEEecChhhHHhHHH-HHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCC
Q 037622 243 EYLSSEAVFLAVLPMFHIYGLSL-FALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNS 321 (560)
Q Consensus 243 ~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 321 (560)
..+.+++++++..|++|.+++.. .....+..|.+++..+.+++..++..+++++++.+..+|..+..+... .......
T Consensus 218 ~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 296 (536)
T d1mdba_ 218 CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDA-ASSRRDD 296 (536)
T ss_dssp HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHH-HHHCCCC
T ss_pred cccccccccccccccccccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhh-ccccccc
Confidence 67899999999999999998743 444455567888888889999999999999999999999999998876 5556677
Q ss_pred CCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCC
Q 037622 322 LKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLP 401 (560)
Q Consensus 322 l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~ 401 (560)
+++++.+++||+++++.+.+++.+.+ +......|+.+|.+..+.... .......+++|.|+++....+++.+++++++
T Consensus 297 ~~~~~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~ 374 (536)
T d1mdba_ 297 LSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLD-DPEEIIVNTQGKPMSPYDESRVWDDHDRDVK 374 (536)
T ss_dssp CTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECCTT-SCHHHHHHCCCEESSTTCEEEEECTTSCBCC
T ss_pred cCcceeEEEeccccccccccchhhcc-Cceeeeccccccccccccccc-cccccccCCcccCCCCcceEEEEcCCCCeec
Confidence 89999999999999999999999999 788888888888776554432 2223456789999976666666658899999
Q ss_pred CCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCC
Q 037622 402 PGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPE 481 (560)
Q Consensus 402 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~ 481 (560)
.|+.|||+++|+.++.||+++++.+...++.++||+|||++++++||.+++.||.||+||++|++|+|.+||++|.++|+
T Consensus 375 ~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~ 454 (536)
T d1mdba_ 375 PGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPA 454 (536)
T ss_dssp TTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTT
T ss_pred ccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCC
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhc-cCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhccC
Q 037622 482 ILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQR-VAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 482 v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~ 560 (560)
|.+++|++.+++..|+.++++|++.++ ..+.++++++++++ |++|++|+.|+++++||+|++|||+|++|+++++++|
T Consensus 455 V~~a~vvg~~~~~~g~~~~a~v~~~~~-~~~~~~l~~~l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~l 533 (536)
T d1mdba_ 455 VHDAAMVSMPDQFLGERSCVFIIPRDE-APKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533 (536)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEESSS-CCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred ccEEEEEEEEcCCCCeEEEEEEEECCC-CCCHHHHHHHHHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHHHH
Confidence 999999999999989999999998765 46788999999986 9999999999999999999999999999999998764
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1.1e-72 Score=591.61 Aligned_cols=495 Identities=19% Similarity=0.241 Sum_probs=421.3
Q ss_pred CCCCCceeccCCCCCCCCCCCCCCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEE
Q 037622 19 YSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAV 96 (560)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V 96 (560)
++++..+|.++....++|+ ..|++++|.++++ |+++|+++. ++++||+||+++++++|++|.+ +|+++||+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~---~~tl~~l~~~~a~~~Pd~~Al~~~--~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V 76 (514)
T d1amua_ 3 HEEEQYLFAVNNTKAEYPR---DKTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIE-KGIGKDTLV 76 (514)
T ss_dssp CHHHHHHHHTTCCCCCCCT---TCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEE
T ss_pred HHHHHHHHHhcCCCCCCCC---CCcHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHH-cCcCCcCEE
Confidence 4556678888876677764 3799999988884 779999997 8999999999999999999999 899999999
Q ss_pred EEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCccccc
Q 037622 97 LLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFK 176 (560)
Q Consensus 97 ~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 176 (560)
+|+++|++++++++|||+++|++++|+++.++.+++.++++.+++ ++++++......+.................
T Consensus 77 ai~~~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~~~~~~--- 151 (514)
T d1amua_ 77 GIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQA--RMLLTQKHLVHLIHNIQFNGQVEIFEEDTI--- 151 (514)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTC--SEEEECGGGHHHHTTSCCCSEEEECCCSTT---
T ss_pred EEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCC--cEEEEehhhhhhhhhhcccccccccccccc---
Confidence 999999999999999999999999999999999999999999999 999999888777665544333333222100
Q ss_pred CCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecC
Q 037622 177 EGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLP 256 (560)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 256 (560)
..........+..++++++|+|||||||.||+|+++|.++......... .......++++...|
T Consensus 152 -----------~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~-----~~~~~~~d~~l~~~p 215 (514)
T d1amua_ 152 -----------KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFEN-----SLNVTEKDRIGQFAS 215 (514)
T ss_dssp -----------TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHH-----TSCCCTTCEEEECSC
T ss_pred -----------cccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccc-----cccccccccccceec
Confidence 0111111223346789999999999999999999999999998888776 577889999999999
Q ss_pred hhhHHhHHHHHHHHhhCCCEEEEeCC---cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccC
Q 037622 257 MFHIYGLSLFALGLLSLGPSVVVMRR---FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAA 333 (560)
Q Consensus 257 ~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~ 333 (560)
++|..++. .++.++..|+++++... .+...+++.+..+.++.+...|..... ....++.+++.++++|+
T Consensus 216 ~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~G~ 287 (514)
T d1amua_ 216 ISFDASVW-EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH-------LDPERILSIQTLITAGS 287 (514)
T ss_dssp TTSTHHHH-HHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTT-------SCTTTCCSCSEEEEESS
T ss_pred cccccccc-cccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccc-------ccccccccccEEEEecc
Confidence 99999985 77788888999988764 456778899999999999998876443 23456889999999999
Q ss_pred CCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCC-CCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEec
Q 037622 334 PANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKK-FSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG 412 (560)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~-~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~ 412 (560)
++++++.+++.+ ++.+++.||+||++.+++....... ....++.|.+.++..+.+.| +++++++.|+.|||+|+|
T Consensus 288 ~~~~~~~~~~~~---~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~ 363 (514)
T d1amua_ 288 ATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGG 363 (514)
T ss_dssp CCCHHHHHHHTT---TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEE
T ss_pred cCCHHHhhhhcc---ceeEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeec-ccceecCCCCeeEEEEcc
Confidence 999999887765 6789999999999988765443332 33456788999999999999 789999999999999999
Q ss_pred ccchhhhcCCchhhhhcc------CCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEE
Q 037622 413 PGTMKEYINNADATMSTI------DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVA 486 (560)
Q Consensus 413 ~~~~~gy~~~~~~~~~~~------~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~ 486 (560)
|+++.||+++++.+...| +.+|||+|||+|++|+||+++++||++|+|+++|++|+|.+||++|.++|+|.+++
T Consensus 364 ~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~ 443 (514)
T d1amua_ 364 EGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETA 443 (514)
T ss_dssp TTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEE
T ss_pred CcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEE
Confidence 999999999999887775 45789999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHH
Q 037622 487 VTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554 (560)
Q Consensus 487 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~ 554 (560)
|++.+++..++.+++++++.++ .+.++++++++++|+.|++|..|+++++||+|++|||+|++||+
T Consensus 444 V~~~~~~~~g~~~~a~v~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 444 VSVHKDHQEQPYLCAYFVSEKH--IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509 (514)
T ss_dssp EEEEECTTSCEEEEEEEEESSC--CCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred EEEEECCCCCEEEEEEEEcCCC--CCHHHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence 9999999999999999988765 57889999999999999999999999999999999999999986
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=3.1e-67 Score=548.20 Aligned_cols=494 Identities=24% Similarity=0.327 Sum_probs=412.5
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
-|++++|.++++ ++++|+++...++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++
T Consensus 2 ~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v 80 (503)
T d3cw9a1 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHRLGAV 80 (503)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHH-cCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcE
Confidence 589999999885 669999987667899999999999999999999 89999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchH--Hhh-hcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVD--KLR-SWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVER 196 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~--~~~-~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (560)
++|++|.++.++++++++.+++ ++++++..... .+. .....+++.+++...+. ...........
T Consensus 81 ~vpi~~~~~~~~i~~~l~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~ 147 (503)
T d3cw9a1 81 PALLNPRLKSAELAELIKRGEM--TAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDG-----------EPYSYGPPIED 147 (503)
T ss_dssp EEEECTTSCHHHHHHHHHHTTC--SEEEESSCHHHHHHHHHTTCCCEEEEHHHHEETT-----------EECCCSCCCCC
T ss_pred EEEeCCCCCHHHHHHHHHhcCC--cEEEeecchHHHHHHhhhccccccccchhhhhhh-----------cccccCCcccc
Confidence 9999999999999999999999 88887765321 111 12223444433211000 00011122233
Q ss_pred CCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCE
Q 037622 197 PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPS 276 (560)
Q Consensus 197 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~ 276 (560)
....++++++++|||||||.||+|.++|.++...+....... .......++++..+|++|..+.....+.+...++.
T Consensus 148 ~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (503)
T d3cw9a1 148 PQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGT 224 (503)
T ss_dssp CCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCE
T ss_pred ccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccccccccccccccccccccc
Confidence 455788999999999999999999999999998887766522 23456678999999998888887788888899999
Q ss_pred EEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhh-ccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecc
Q 037622 277 VVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAK-GLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQG 355 (560)
Q Consensus 277 ~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~-~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 355 (560)
+++.+.+++..++..+..++++.+..+|..+..+..... ......+++||.+++||+++++++...+...+ +..+.+.
T Consensus 225 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~-~~~~~~~ 303 (503)
T d3cw9a1 225 YVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNI 303 (503)
T ss_dssp EEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHC-CSEEEEE
T ss_pred cccccccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccccccccc-ccccccc
Confidence 999999999999999999999999999999988765422 23445678999999999999999999999998 7889999
Q ss_pred cchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecc-cchhhhcCCchhhhhccCCCC
Q 037622 356 YGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP-GTMKEYINNADATMSTIDKEG 434 (560)
Q Consensus 356 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~-~~~~gy~~~~~~~~~~~~~~~ 434 (560)
||.+|++..+....... ....+.+.+.+.....+.+ ..++.++.|+.|++.+.+. ....+|+++++.+.+.| .+|
T Consensus 304 yg~~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g 379 (503)
T d3cw9a1 304 YGTTEAMNSLYMRQPKT--GTEMAPGFFSEVRIVRIGG-GVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDG 379 (503)
T ss_dssp EEETTTEEEEEEESCSS--SSEEBCCTTCCEEEECTTS-CTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETT
T ss_pred ccccccceeeeeccccc--cccccccccccceeeeeec-ccCcccCCCccccccccccccccccccCChhhhHHHh-cCC
Confidence 99999988776554332 2333444444444444444 6788999999998877764 66778999999998888 689
Q ss_pred ceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHH
Q 037622 435 WLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEA 514 (560)
Q Consensus 435 ~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 514 (560)
||+|||+|++++||.++++||+||+||++|++|+|.+||++|.++|+|.+|+|++.+++..|+.++++|++..+...+.+
T Consensus 380 ~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~ 459 (503)
T d3cw9a1 380 WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSAD 459 (503)
T ss_dssp EEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred ceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999988889999
Q ss_pred HHHHHHH-hccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHh
Q 037622 515 AVIDYLA-QRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLT 557 (560)
Q Consensus 515 ~l~~~~~-~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~ 557 (560)
+++++++ ++|+.|++|+.|+++++||+|++|||+|++|+++++
T Consensus 460 ~l~~~~~~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~~ 503 (503)
T d3cw9a1 460 ALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (503)
T ss_dssp HHHHHHHHSSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred HHHHHHHhcCCCCCCCccEEEEECCCCcCCCcCccHHHHHHhcC
Confidence 9999995 679999999999999999999999999999999863
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=86.48 E-value=0.6 Score=45.40 Aligned_cols=89 Identities=13% Similarity=0.088 Sum_probs=71.6
Q ss_pred hhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeC-CcCHHHHHHHHHHhCcce
Q 037622 221 ELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMR-RFEASEMLKVIDKYGVTH 299 (560)
Q Consensus 221 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~ 299 (560)
.+|++.+...+..++..+. ..++.++|++..+++-...+ ...+++++..|+..+..+ ..+.+++...++..+++.
T Consensus 47 ~lTy~el~~~~~~lA~~L~--~~Gi~~Gd~Vai~~~ns~e~--~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~ 122 (541)
T d1lcia_ 47 NITYAEYFEMSVRLAEAMK--RYGLNTNHRIVVCSENSLQF--FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 122 (541)
T ss_dssp EEEHHHHHHHHHHHHHHHH--HHTCCTTCEEEEECSSCSST--HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred EeeHHHHHHHHHHHHHHHH--HcCcCCCCEEEEEeCCCHHH--HHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceE
Confidence 4789999888887776554 45789999999998865433 347778889999998886 478899999999999999
Q ss_pred eccCcHHHHHHHHh
Q 037622 300 FPVVPPILMALTKA 313 (560)
Q Consensus 300 l~~~P~~~~~l~~~ 313 (560)
+++....+..+.+.
T Consensus 123 vi~~~~~~~~~~~~ 136 (541)
T d1lcia_ 123 VFVSKKGLQKILNV 136 (541)
T ss_dssp EEECGGGHHHHHHH
T ss_pred Eeeeccccccchhc
Confidence 99999888777654
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=83.43 E-value=5.3 Score=38.19 Aligned_cols=104 Identities=6% Similarity=-0.054 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.|+.+|++...+|.. -.+|...+...+..++..+. ..+++++|++...++-...+ ...+++++..|+..+.
T Consensus 24 ~pd~~av~~~~~g~~-----~~~Ty~el~~~~~~~A~~L~--~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~vp 94 (534)
T d1v25a_ 24 FGRKEVVSRLHTGEV-----HRTTYAEVYQRARRLMGGLR--ALGVGVGDRVATLGFNHFRH--LEAYFAVPGMGAVLHT 94 (534)
T ss_dssp STTCEEEEECTTSCE-----EEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEE
T ss_pred cCCCeEEEEecCCce-----EEEcHHHHHHHHHHHHHHHH--HCCcCCCCEEEEEeCCCHHH--HHHHHHHHHhCcEEEe
Confidence 467888776665432 23788888888777776554 45788999999999875543 3478889999999998
Q ss_pred eCC-cCHHHHHHHHHHhCcceeccCcHHHHHHHH
Q 037622 280 MRR-FEASEMLKVIDKYGVTHFPVVPPILMALTK 312 (560)
Q Consensus 280 ~~~-~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~ 312 (560)
.++ .+.+++...++..++..++........+..
T Consensus 95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~ 128 (534)
T d1v25a_ 95 ANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128 (534)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred cCCCCCHHHHHHHHHhhccccccccchhhhhHHH
Confidence 874 688999999999999999988877776654
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=82.30 E-value=2.8 Score=39.63 Aligned_cols=95 Identities=19% Similarity=0.170 Sum_probs=72.0
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.|+.+|++.-.+|. .+|...+...+..++..+. ..+.+++|++..+++-...+- ..+++++..|+..+.
T Consensus 15 ~pd~~al~~~~~~~-------~~Ty~el~~~~~~~a~~L~--~~Gv~~gd~V~i~~~n~~~~~--~~~lA~~~~G~v~vp 83 (503)
T d3cw9a1 15 APDHCALAVPARGL-------RLTHAELRARVEAVAARLH--ADGLRPQQRVAVVAPNSADVV--IAILALHRLGAVPAL 83 (503)
T ss_dssp STTSEEEEEGGGTE-------EEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSCHHHH--HHHHHHHHHTCEEEE
T ss_pred CCCCeEEEECCCCc-------EEeHHHHHHHHHHHHHHHH--HcCcCCCCEEEEEeCCCHHHH--HHHHHHHHhCcEEEE
Confidence 46777776655443 3788888887777776544 356789999999988655433 478888999999988
Q ss_pred eCC-cCHHHHHHHHHHhCcceeccCcH
Q 037622 280 MRR-FEASEMLKVIDKYGVTHFPVVPP 305 (560)
Q Consensus 280 ~~~-~~~~~~~~~l~~~~~t~l~~~P~ 305 (560)
.++ ..++++...+++.++..++....
T Consensus 84 i~~~~~~~~i~~~l~~~~~~~~i~~~~ 110 (503)
T d3cw9a1 84 LNPRLKSAELAELIKRGEMTAAVIAVG 110 (503)
T ss_dssp ECTTSCHHHHHHHHHHTTCSEEEESSC
T ss_pred eCCCCCHHHHHHHHHhcCCcEEEeecc
Confidence 864 68899999999999999876654
|