Citrus Sinensis ID: 037675

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
Protein Sequence
MGSVSLKIGDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDGQIHSLIHNHKNISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASELKLFLQHHQLPLGKDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRRCFAKSVPKVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNENQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPVRVS
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccEEEcccccccHHHHHHHcccccccEEEEEEcccccHHHHHHHHcccEEEEEcccccHHHHHHHHHcccccEEcccccccccccccccEEEEccccccccccHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHHHccEEEEEEEEEEcccccccEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHcHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEccccccccHHcccccccccccccccccccccccEEccccccccccHHHHHccccccEEEEEEccccHHHHHHHHHHccEEEEEEccccccHHHHHHHHccccEEEEEcccccccccccEEEEEcHHHccccccccccEEEEEEHHHHcccccEEEEEccccccHHHHHHHHHHHHHccccEEEEEEcccccccccEEEEEEEEccccccc
Coil and Loop (DISEMBL)
mgsvslkigdgtarfKRATICSSALNILMLFSVVTTNLFALYaftsspkdgqihsLIHNHKNISLISEHVSLILKEIDSSQKKLAKMEKELLGYqsidlsrpnIASELKLFLQHhqlplgkdsrTGITEMVASVGHSCEKSADLLTQYMTyklsgpcpddwsLAQKLILrgceplprrrcfaksvpkvglqsfpvslwkpvsdkivtwsglgcknlscliskklsrecvgcfdldnpneNQRYIKARGKNDFLIDDVLAlgsggirigfdigggsgTFAARMAERNVTVITNtlnvdapysefiaarglfplylsldhrfpfydnVFDLVHassgldvggqpeklEFLMFDFDRILRAgglfwldnfycandeKKSALTRLIERFGYKKLKwvvgekgetgkSEVYLSAVlqkpvrvs
Flexible Loop (DISEMBL)
mgsvslkigdgtarfKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDGQIHSLIHNHKNISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASELKLFLQHHQLPLGKDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRRCFAKsvpkvglqsfpvslwkpVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNENQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERfgykklkwvvgekgetgksevylsavlqkpvrvs
Low Complexity Region (SEG)
MGSVSLKIGDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDGQIHSLIHNHKNISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASELKLFLQHHQLPLGKDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRRCFAKSVPKVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNENQRYIKARGKNDFLIDDVLALgsggirigfdigggsgTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPVRVS
Disordered region (IsUnstruct)
********GDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDGQIHSLIHNHKNISLISEHVSLILKEID***********ELLGYQSIDLSRPNIASELKLFLQHHQLPLGKDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRRCFAKSVPKVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNENQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAV********
Disordered Region (DISOPRED)
********************CSSALNILMLFSVVTTNLFALYAFTSS****************SLISEHVSLILKEI******************************LKLFLQHHQLPLGKDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLI*******************VGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNENQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPV***
Disordered Region (DISEMBL)
MGSVSLKIGDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDGQIHSLIHNHKNISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASELKLFLQHHQLPLGKDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRRCFAKSVPKVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNENQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPVRVS
Disordered Region (DISPRO)
**SVSLKIGDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSS***************ISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASELKLFLQHHQLPLGKDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRRCFAKSVPKVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNENQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKP****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSVSLKIGDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDGQIHSLIHNHKNISLISEHxxxxxxxxxxxxxxxxxxxxxLLGYQSIDLSRPNIASELKLFLQHHQLPLGKDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRRCFAKSVPKVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNENQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPVRVS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	418	2.2.26 [Sep-21-2011]
O80844	631	Probable methyltransferas	no	no	0.265	0.175	0.319	8e-06
Q9SZX8	633	Probable methyltransferas	no	no	0.263	0.173	0.308	4e-05
Q9LN50	724	Probable methyltransferas	no	no	0.277	0.160	0.314	5e-05
Q9FG39	682	Probable methyltransferas	no	no	0.241	0.148	0.310	9e-05
Q9ZPH9	633	Probable methyltransferas	no	no	0.275	0.181	0.286	0.0002
Q8H118	611	Probable methyltransferas	no	no	0.322	0.220	0.272	0.0002
Q94EJ6	621	Probable methyltransferas	no	no	0.277	0.186	0.282	0.0002
Q0WT31	770	Probable methyltransferas	no	no	0.248	0.135	0.311	0.0003
Q8GYW9	603	Probable methyltransferas	no	no	0.339	0.235	0.287	0.0005
Q9C6S7	603	Probable methyltransferas	no	no	0.208	0.144	0.274	0.0005

>sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 8/119 (6%)

Query: 251 DFLIDDV---LALGSGGIRIGFDIGGGSGTFAARMAERNVTVIT-NTLNVDAPYSEFIAA 306
           D  IDD+   + L  G IR   D G G  +F A +  RN+T ++    +      +F   
Sbjct: 192 DAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYLLSRNITTMSFAPRDTHEAQVQFALE 251

Query: 307 RGLFPLY-LSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWL 364
           RG+  +  +    R P+    FDL H S  L   GQ +   +LM + DR+LR GG +W+
Sbjct: 252 RGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQNDGA-YLM-EVDRVLRPGG-YWI 307

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 10/120 (8%)

Query: 251 DFLIDDV---LALGSGGIRIGFDIGGGSGTFAARMAERNVTVIT-NTLNVDAPYSEFIAA 306
           D  IDD+   + L  GGIR   D G G  +F A + +R++  ++    +      +F   
Sbjct: 198 DAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIMAVSFAPRDTHEAQVQFALE 257

Query: 307 RGLFPLYLSL--DHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWL 364
           RG+ P  + +    R P+    FDL H S  L    + + L +LM + DR+LR GG +W+
Sbjct: 258 RGV-PAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKNDGL-YLM-EVDRVLRPGG-YWI 313

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LN50|PMTS_ARATH Probable methyltransferase PMT28 OS=Arabidopsis thaliana GN=At1g19430 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 8/124 (6%)

Query: 264 GIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLS--LDHRFP 321
            +RI  DIG    +F A + +++V  ++  L  D      +A    FP ++S     R P
Sbjct: 343 NVRIVLDIGCSDSSFVAALLDKDVLTVSLGLKDDLVDLAQVALERGFPTFVSSLASRRLP 402

Query: 322 FYDNVFDLVH-ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWL--DNFYCANDEKKSAL 378
           F   VFD +H A+ G+       K   L+ + +RILR  G F L  +N    +DE  +AL
Sbjct: 403 FPSGVFDTIHCAACGVHWHSHGGK---LLLEMNRILRPNGYFILSSNNDKIEDDEAMTAL 459

Query: 379 TRLI 382
           T  I
Sbjct: 460 TASI 463

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 2/103 (1%)

Query: 264 GIRIGFDIGGGSGTFAARMAERNVTV-ITNTLNVDAPYS-EFIAARGLFPLYLSLDHRFP 321
           G+R   D+  G G FAA +AE  V   + N + V  P +   I  RGL  +       F 
Sbjct: 518 GLRNVLDMRAGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFD 577

Query: 322 FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWL 364
            Y   +DL+HA+    +  +   +  +M + DRILR GG  ++
Sbjct: 578 TYPRTYDLLHAAGLFSIERKRCNMTTMMLEMDRILRPGGRVYI 620

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 247 RGKNDFL--IDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVIT-NTLNVDAPYSEF 303
           RG + ++  I  ++ L  G IR   D G G  +F A +  RN+  ++    +      +F
Sbjct: 198 RGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMSRNIVTMSFAPRDTHEAQVQF 257

Query: 304 IAARGLFPLYLSLDH-RFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLF 362
              RG+  +   L   R PF    FD+ H S  L   GQ       + + DR+LR GG +
Sbjct: 258 ALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQYNGT--YLIEVDRVLRPGG-Y 314

Query: 363 WL 364
           W+
Sbjct: 315 WI 316

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8H118|PMT1_ARATH Probable methyltransferase PMT1 OS=Arabidopsis thaliana GN=At3g23300 PE=1 SV=2

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 260 LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYS-EFIAARGLFPLYLSLDH 318
           + S  +R   D+    G+FAA + E++V V+ N +  D P + + I  RGL     S   
Sbjct: 450 IQSDTVRNIMDMKASMGSFAAALKEKDVWVM-NVVPEDGPNTLKLIYDRGLMGAVHSWCE 508

Query: 319 RFPFYDNVFDLVHASSGL-DVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSA 377
            F  Y   +DL+HA   + D+  +    E L+ + DRILR  G   + +        K +
Sbjct: 509 AFSTYPRTYDLLHAWDIISDIKKRGCSAEDLLLEMDRILRPSGFILIRD--------KQS 560

Query: 378 LTRLIERFGYKKLKWVVGEKGETGKSE 404
           +  L++++  K L W   E     +S+
Sbjct: 561 VVDLVKKY-LKALHWEAVETKTASESD 586

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 1/117 (0%)

Query: 260 LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHR 319
           +GS   R   D+  G G FAA +      V+     ++      +  RGL  +Y      
Sbjct: 455 IGSTRYRNVMDMNAGLGGFAAALESPKSWVMNVIPTINKNTLSVVYERGLIGIYHDWCEG 514

Query: 320 FPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGL-FWLDNFYCANDEKK 375
           F  Y   +D +HAS    +     KLE ++ + DRILR  G+  + D     ND +K
Sbjct: 515 FSTYPRTYDFIHASGVFSLYQHSCKLEDILLETDRILRPEGIVIFRDEVDVLNDVRK 571

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT25 OS=Arabidopsis thaliana GN=At2g34300 PE=1 SV=2

 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 2/106 (1%)

Query: 258 LALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYS-EFIAARGLFPLYLSL 316
           + +    +R   D+    G FAA + +  + V+ N + VDAP +   I  RGLF +Y   
Sbjct: 611 MGIDWSNVRNVMDMRAVYGGFAAALKDLKLWVM-NVVPVDAPDTLPIIYERGLFGIYHDW 669

Query: 317 DHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLF 362
              F  Y   +DL+HA        +   L  +M + DRILR  G F
Sbjct: 670 CESFNTYPRTYDLLHADHLFSTLRKRCNLVSVMAEIDRILRPQGTF 715

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8GYW9|PMT4_ARATH Probable methyltransferase PMT4 OS=Arabidopsis thaliana GN=At1g13860 PE=2 SV=2

 Score = 46.2 bits (108), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 25/167 (14%)

Query: 252 FLIDDVLALGS------GGIRIGFDIGGGSGTFAARMAERNVTVI-TNTLNVDAPYSEFI 304
           F I +++ LGS       GIR   DIG G G+F A +   NV  I            +  
Sbjct: 182 FQIAEMIGLGSDTEFPQAGIRTVLDIGCGFGSFGAHLVSLNVMPICIAEYETSGSQVQLA 241

Query: 305 AARGLFPLYLS--LDHRFPFYDNVFDLVH-ASSGL--DVGGQPEKLEFLMFDFDRILRAG 359
             RGL P  +      + P+    FD+VH A  G+  D+     K   L+ + DR+L+ G
Sbjct: 242 LERGL-PAMIGNFFSKQLPYPALSFDMVHCAQCGITWDI-----KDAMLLLEVDRVLKPG 295

Query: 360 GLFWLDNFYC-----ANDEKKSALTRLIERFGYKKLKW-VVGEKGET 400
           G F L +        + D KK++++  ++    KK+ W + G++ ET
Sbjct: 296 GYFVLTSPTSKAQGNSPDTKKTSISTRVDELS-KKICWSLSGQQDET 341

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 46/102 (45%)

Query: 259 ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDH 318
           ALG+  IR   D+    G F+A + E  + V+    +  A     +  RGL   Y     
Sbjct: 448 ALGTDKIRNVMDMNTVYGGFSAALIEDPIWVMNVVSSYSANSLPVVFDRGLIGTYHDWCE 507

Query: 319 RFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGG 360
            F  Y   +DL+H  S   +     ++++++ + DRILR  G
Sbjct: 508 AFSTYPRTYDLLHLDSLFTLESHRCEMKYILLEMDRILRPSG 549

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	418
449437530	417	PREDICTED: uncharacterized protein LOC10	0.997	1.0	0.863	0.0
224082972	420	predicted protein [Populus trichocarpa]	0.995	0.990	0.862	0.0
225458039	419	PREDICTED: uncharacterized protein LOC10	0.995	0.992	0.847	0.0
224065960	420	predicted protein [Populus trichocarpa]	0.995	0.990	0.864	0.0
255538884	490	ATRAD3, putative [Ricinus communis] gi|2	0.995	0.848	0.855	0.0
27450532	421	hypothetical protein [Prunus persica]	0.997	0.990	0.859	0.0
356553395	421	PREDICTED: uncharacterized protein LOC10	0.992	0.985	0.805	0.0
356509686	420	PREDICTED: uncharacterized protein LOC10	0.992	0.988	0.781	0.0
356564345	422	PREDICTED: uncharacterized protein LOC10	0.992	0.983	0.796	0.0
297814964	410	hypothetical protein ARALYDRAFT_904944 [	0.980	1.0	0.764	0.0

>gi|449437530|ref|XP_004136545.1| PREDICTED: uncharacterized protein LOC101215265 [Cucumis sativus] gi|449501114|ref|XP_004161281.1| PREDICTED: uncharacterized LOC101215265 [Cucumis sativus]

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/417 (86%), Positives = 388/417 (93%)

Query: 1   MGSVSLKIGDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDGQIHSLIHNH 60
           MGSVSLKIGDGTARFKRAT+CSSALNILML SVVTTNLFALYAFT SPKD +IH+L   H
Sbjct: 1   MGSVSLKIGDGTARFKRATLCSSALNILMLISVVTTNLFALYAFTYSPKDREIHTLNRTH 60

Query: 61  KNISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASELKLFLQHHQLPLG 120
           KNISLISE VSLIL+EID SQKKLA+MEKE+LGY+SIDLSR N+A+ELKLFLQ H LPLG
Sbjct: 61  KNISLISEQVSLILREIDVSQKKLAQMEKEILGYESIDLSRSNVANELKLFLQRHPLPLG 120

Query: 121 KDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRRC 180
           KDS++GITEMVASVGHSCEKS DLL+QYM YK+SGPCPDDWSLAQKLILRGCEPLPRRRC
Sbjct: 121 KDSKSGITEMVASVGHSCEKSMDLLSQYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRRC 180

Query: 181 FAKSVPKVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNEN 240
            AKSVPKVGLQ FP+SLWKPVSDKIV WSGLGCKN  CL SKKL R+CVGCFDL N  EN
Sbjct: 181 LAKSVPKVGLQPFPISLWKPVSDKIVMWSGLGCKNFQCLNSKKLGRDCVGCFDLINGFEN 240

Query: 241 QRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPY 300
           QR++KARGKNDF IDDVLAL SGGIRIGFDIGGGSGTFAARMAE+NVTVIT+TLN+DAP+
Sbjct: 241 QRFVKARGKNDFPIDDVLALTSGGIRIGFDIGGGSGTFAARMAEKNVTVITSTLNIDAPF 300

Query: 301 SEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGG 360
           SEFIAARGLFPL+LSLDHRFPFYDNVFDLVHAS+GLD+GG+PEKLEFLMFD DRILRAGG
Sbjct: 301 SEFIAARGLFPLFLSLDHRFPFYDNVFDLVHASNGLDIGGKPEKLEFLMFDIDRILRAGG 360

Query: 361 LFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPVRV 417
           L WLDNFYCANDEKK ALTRLIERFG+KKLKWV+GEK E+GKSEVYLSAVLQKPVRV
Sbjct: 361 LLWLDNFYCANDEKKKALTRLIERFGFKKLKWVIGEKSESGKSEVYLSAVLQKPVRV 417

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082972|ref|XP_002306913.1| predicted protein [Populus trichocarpa] gi|222856362|gb|EEE93909.1| predicted protein [Populus trichocarpa]

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/421 (86%), Positives = 390/421 (92%), Gaps = 5/421 (1%)

Query: 1   MGSVSLKIGDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDGQIHSLIHN- 59
           MGSVSLKIGDGTARFKRA+ CSSA+NILMLFSV+TTNLFALYAFTSSPKD Q H LIHN 
Sbjct: 1   MGSVSLKIGDGTARFKRASFCSSAVNILMLFSVITTNLFALYAFTSSPKDHQAH-LIHNP 59

Query: 60  HKNISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASELKLFLQHHQLPL 119
           HKNISLISEHVSLIL+EI SSQKKLA+MEKELLGY+++D+SRPNIASELKLFLQHHQLPL
Sbjct: 60  HKNISLISEHVSLILREIASSQKKLARMEKELLGYETMDISRPNIASELKLFLQHHQLPL 119

Query: 120 GKDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRR 179
           GKDSRTGITEMVASVGHSCEKS DLL+QYM YK+SGPCPDDWSL QKLILRGCEPLPRRR
Sbjct: 120 GKDSRTGITEMVASVGHSCEKSPDLLSQYMVYKISGPCPDDWSLGQKLILRGCEPLPRRR 179

Query: 180 CFAKSVPKVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNE 239
           CFAKSVPKVGL  FPVSLWKPVS+KI+TWSGLGCKN  CL  KKLSR+C GCF++ +  E
Sbjct: 180 CFAKSVPKVGLYRFPVSLWKPVSEKILTWSGLGCKNFECLNKKKLSRDCDGCFNITSGYE 239

Query: 240 NQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAP 299
            Q+++KARG+NDFLIDDVLAL SGGIRIGFDI GGSGTFAARMAERNVTVITNTLNVDAP
Sbjct: 240 IQKFVKARGRNDFLIDDVLALASGGIRIGFDISGGSGTFAARMAERNVTVITNTLNVDAP 299

Query: 300 YSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAG 359
           +SEFIAARGLFPLYLSLDHRFPFYDNVFDL+HASSGLD G +PE+LEFLMFD DRILRAG
Sbjct: 300 FSEFIAARGLFPLYLSLDHRFPFYDNVFDLIHASSGLDGGDKPEELEFLMFDIDRILRAG 359

Query: 360 GLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGET---GKSEVYLSAVLQKPVR 416
           GLFWLDNFYCAND KK+ALTRLIERFGYKKLKWVVGEK +T   GKSEVYLSAVLQKP R
Sbjct: 360 GLFWLDNFYCANDVKKTALTRLIERFGYKKLKWVVGEKVDTAGSGKSEVYLSAVLQKPAR 419

Query: 417 V 417
           V
Sbjct: 420 V 420

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458039|ref|XP_002277626.1| PREDICTED: uncharacterized protein LOC100259190 [Vitis vinifera]

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/420 (84%), Positives = 388/420 (92%), Gaps = 4/420 (0%)

Query: 1   MGSVSLKIGDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDGQIHSLIHNH 60
           MGSVSLKIGDGTARF+RA++CSSA+N+LMLFSV+TTNLFALYAFTSSPKD Q H   H H
Sbjct: 1   MGSVSLKIGDGTARFRRASLCSSAVNVLMLFSVITTNLFALYAFTSSPKD-QAHPTQHTH 59

Query: 61  KNISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASELKLFLQHHQLPLG 120
           KNIS ISE VSLI++EI+SSQKKLA+MEKELLGY+SIDLSRPN ASELKLFLQ HQLPLG
Sbjct: 60  KNISFISEQVSLIIREIESSQKKLAQMEKELLGYESIDLSRPNTASELKLFLQRHQLPLG 119

Query: 121 KDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRRC 180
           KDS+TGITEMVASVGHSC+KS DLL+QYMTYK+SG CPDDWSLAQ+LILRGCEPLPRRRC
Sbjct: 120 KDSKTGITEMVASVGHSCDKSVDLLSQYMTYKVSGACPDDWSLAQRLILRGCEPLPRRRC 179

Query: 181 FAKSVPKVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNEN 240
           FAKSVPKVGL SFP+SLWKPVSDKIV+WSGLGCKN  CL +KKL ++CVGCFDL N  EN
Sbjct: 180 FAKSVPKVGLYSFPISLWKPVSDKIVSWSGLGCKNFECLNNKKLGKDCVGCFDLANGYEN 239

Query: 241 QRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPY 300
           QR++KARGKNDFLIDDVLALGSGG R GFDIGGGSGTFAARMAERNVTVIT TLNVDAP 
Sbjct: 240 QRFVKARGKNDFLIDDVLALGSGGTRTGFDIGGGSGTFAARMAERNVTVITATLNVDAPI 299

Query: 301 SEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGG 360
           SEF++ARGLFP+YLSLDHRFPFYDNVFD+VHA+SGLDVGG+PEKLEFLMFD DRILRAGG
Sbjct: 300 SEFVSARGLFPVYLSLDHRFPFYDNVFDIVHAASGLDVGGRPEKLEFLMFDIDRILRAGG 359

Query: 361 LFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGET---GKSEVYLSAVLQKPVRV 417
           LFWLDNFYCAN+EKK ALTRLIERFGY+KLKWVVGEK +    GKSEVYLS VLQKPVRV
Sbjct: 360 LFWLDNFYCANEEKKKALTRLIERFGYRKLKWVVGEKPDAAGPGKSEVYLSGVLQKPVRV 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065960|ref|XP_002301989.1| predicted protein [Populus trichocarpa] gi|222843715|gb|EEE81262.1| predicted protein [Populus trichocarpa]

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/421 (86%), Positives = 389/421 (92%), Gaps = 5/421 (1%)

Query: 1   MGSVSLKIGDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDGQIHSLIHN- 59
           MGSVSLKIGDGTARFKRA+ CSSA+NILMLFSV+TTNLFALYAFTSSPKD Q H L HN 
Sbjct: 1   MGSVSLKIGDGTARFKRASFCSSAVNILMLFSVLTTNLFALYAFTSSPKDHQTH-LFHNP 59

Query: 60  HKNISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASELKLFLQHHQLPL 119
           HKNISLISEHVSLIL+EI +SQKKLA MEKELLGY+++D+SRPNIASELKLFLQHHQLPL
Sbjct: 60  HKNISLISEHVSLILREIAASQKKLAGMEKELLGYETMDISRPNIASELKLFLQHHQLPL 119

Query: 120 GKDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRR 179
           GKDSRTGITEMVASVGHSCEKSADLL QYM YK+SGPCP DWSL QKLILRGCEPLPRRR
Sbjct: 120 GKDSRTGITEMVASVGHSCEKSADLLYQYMAYKVSGPCPGDWSLGQKLILRGCEPLPRRR 179

Query: 180 CFAKSVPKVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNE 239
           CFAKSV KVGL  FPVSLWKPVS+KI+TWSGLGCKNL CL  KKLSR+CVGCF++ +  E
Sbjct: 180 CFAKSVQKVGLYRFPVSLWKPVSEKILTWSGLGCKNLECLNRKKLSRDCVGCFNITSDYE 239

Query: 240 NQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAP 299
            QR++KARGKNDF+IDDVLAL SGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAP
Sbjct: 240 TQRFVKARGKNDFIIDDVLALASGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAP 299

Query: 300 YSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAG 359
           +SEFIAARGLFPLYLSLDHRFPFYDNVFDL+HASSGLD G +PEKLEFLMFD DRILRAG
Sbjct: 300 FSEFIAARGLFPLYLSLDHRFPFYDNVFDLIHASSGLDGGDKPEKLEFLMFDIDRILRAG 359

Query: 360 GLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGET---GKSEVYLSAVLQKPVR 416
           GLFWLDNFYCA+DEKK+ALTRLIERF YKKLKWVVGEK +T   GKSEVYLSAVLQKP R
Sbjct: 360 GLFWLDNFYCADDEKKTALTRLIERFQYKKLKWVVGEKIDTAGSGKSEVYLSAVLQKPAR 419

Query: 417 V 417
           V
Sbjct: 420 V 420

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538884|ref|XP_002510507.1| ATRAD3, putative [Ricinus communis] gi|223551208|gb|EEF52694.1| ATRAD3, putative [Ricinus communis]

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/422 (85%), Positives = 391/422 (92%), Gaps = 6/422 (1%)

Query: 1   MGSVSLKIGDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDG-QIHSLIHN 59
           MGSVSLKIGDGTARFKRATICSSA+NILMLFSV++TNLFALYAFTSSPKD  Q H   H 
Sbjct: 70  MGSVSLKIGDGTARFKRATICSSAVNILMLFSVISTNLFALYAFTSSPKDQHQAHIFHHP 129

Query: 60  HKNISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASELKLFLQHHQLPL 119
           HKNISLISE VSLILKEIDSSQKKLAKMEKELLGY++ID+SRPNIA+ELKLFLQHHQLPL
Sbjct: 130 HKNISLISEQVSLILKEIDSSQKKLAKMEKELLGYETIDISRPNIANELKLFLQHHQLPL 189

Query: 120 GKDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRR 179
           GKDSRTGITEMVASVGHSCEKSADLL+QYMTYK+SGPCPDDWSLAQKLILRGCEPLPRRR
Sbjct: 190 GKDSRTGITEMVASVGHSCEKSADLLSQYMTYKVSGPCPDDWSLAQKLILRGCEPLPRRR 249

Query: 180 CFAKSVPKVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKK-LSRECVGCFDLDNPN 238
           CFAKSVPKVGL  FP+SLWKPVSDKI+TWSGLGCK++ CL  KK L+R+CVGCFDL N N
Sbjct: 250 CFAKSVPKVGLSPFPISLWKPVSDKILTWSGLGCKSIDCLNKKKFLTRDCVGCFDLTNGN 309

Query: 239 ENQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDA 298
           ENQ+++KA+ KNDFLIDDVLAL SGGIRIGFDI GGSGTFAARMAERNVT+ITNTLN+DA
Sbjct: 310 ENQKFVKAKSKNDFLIDDVLALASGGIRIGFDIVGGSGTFAARMAERNVTLITNTLNIDA 369

Query: 299 PYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRA 358
           P+SE IAARGLFP+YLSLDH+FPFYDNVFDLVHAS  LDVGG+PEKLEFLMFD DRILRA
Sbjct: 370 PFSELIAARGLFPMYLSLDHKFPFYDNVFDLVHASR-LDVGGKPEKLEFLMFDVDRILRA 428

Query: 359 GGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGET---GKSEVYLSAVLQKPV 415
           GGLFWLDNF CA+DEKK  LTRL+ERFGYKKLKWVVGEK +T   GKSE+YLSAVLQKP 
Sbjct: 429 GGLFWLDNFCCADDEKKRTLTRLLERFGYKKLKWVVGEKVDTAGSGKSELYLSAVLQKPA 488

Query: 416 RV 417
           R+
Sbjct: 489 RM 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27450532|gb|AAO14627.1|AF467900_4 hypothetical protein [Prunus persica]

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/421 (85%), Positives = 393/421 (93%), Gaps = 4/421 (0%)

Query: 1   MGSVSLKIGDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDGQIHSLIHN- 59
           MGSVSLKIGDGTARFKRAT+CSSA+N+LMLFSV+TTNLFALYAFTSSPKD Q + L+H+ 
Sbjct: 1   MGSVSLKIGDGTARFKRATLCSSAVNLLMLFSVITTNLFALYAFTSSPKDQQTYHLLHHT 60

Query: 60  HKNISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASELKLFLQHHQLPL 119
            KNISLISE VSLIL+EIDSSQKKLA+MEKELLGY+SIDLSR N+A ELKLFLQHHQLPL
Sbjct: 61  QKNISLISEQVSLILREIDSSQKKLAQMEKELLGYESIDLSRSNVAHELKLFLQHHQLPL 120

Query: 120 GKDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRR 179
           GKDSRTGITEMVASVGHSCEKSADLL+QYM YK+SGPCPDDWSLAQKLILRGCEPLPRRR
Sbjct: 121 GKDSRTGITEMVASVGHSCEKSADLLSQYMNYKVSGPCPDDWSLAQKLILRGCEPLPRRR 180

Query: 180 CFAKSVPKVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNE 239
           CFAK++PKVGL  FP+SLWKPVSDKIVTWSGLGCK+  CL SKKLSR+CVGCFDL N  E
Sbjct: 181 CFAKTLPKVGLNPFPISLWKPVSDKIVTWSGLGCKSFECLNSKKLSRDCVGCFDLVNGFE 240

Query: 240 NQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAP 299
           NQR++KARGKNDFLIDDVLALGSGGI IGFDIGGGSGTFAARMAERN+TVITNTLN+DAP
Sbjct: 241 NQRFVKARGKNDFLIDDVLALGSGGIIIGFDIGGGSGTFAARMAERNMTVITNTLNIDAP 300

Query: 300 YSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAG 359
           +SEFIAARGLFPL+LSLDHRFPFYDNVFDLVHA+SGLDVGG+PEK EF+MFD DRILR G
Sbjct: 301 FSEFIAARGLFPLFLSLDHRFPFYDNVFDLVHAASGLDVGGKPEKFEFVMFDIDRILRPG 360

Query: 360 GLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEK---GETGKSEVYLSAVLQKPVR 416
           GLFWLDNFYC+N+EKK  LTRLIERFGYKKLKWVVG+K     +GKSEVYLSAVLQKPVR
Sbjct: 361 GLFWLDNFYCSNEEKKRDLTRLIERFGYKKLKWVVGDKVDAAASGKSEVYLSAVLQKPVR 420

Query: 417 V 417
           V
Sbjct: 421 V 421

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553395|ref|XP_003545042.1| PREDICTED: uncharacterized protein LOC100786204 isoform 1 [Glycine max] gi|356553397|ref|XP_003545043.1| PREDICTED: uncharacterized protein LOC100786204 isoform 2 [Glycine max]

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/421 (80%), Positives = 378/421 (89%), Gaps = 6/421 (1%)

Query: 1   MGSVSLKIGDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDGQIHSLIHN- 59
           MGSVSLK+GDGTARF RAT+CSSA+NILM+FSV+TTNLFALYAFT+SPK    HSL+H+ 
Sbjct: 1   MGSVSLKVGDGTARFHRATLCSSAVNILMIFSVITTNLFALYAFTASPKHPH-HSLLHHN 59

Query: 60  -HKNISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASELKLFLQHHQLP 118
            HKNISLISE VSLIL+EID SQKKLA+MEKELLGY+SIDLSRPNIASELKLFLQ HQLP
Sbjct: 60  AHKNISLISEQVSLILREIDLSQKKLAQMEKELLGYESIDLSRPNIASELKLFLQRHQLP 119

Query: 119 LGKDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRR 178
           LGKDSRTGITEMV SVGH+CEK++DLL+Q+M YK+ G CPDDWS+AQKLIL+GCEPLPRR
Sbjct: 120 LGKDSRTGITEMVPSVGHTCEKNSDLLSQFMNYKVFGACPDDWSVAQKLILKGCEPLPRR 179

Query: 179 RCFAKSVPKVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPN 238
           RCFAK+V KVGL  FP SLWKPV +K V WSGL CKN  CL  KKLSRECVGCFDL + N
Sbjct: 180 RCFAKTVSKVGLYPFPDSLWKPVGNKTVNWSGLNCKNFECLNGKKLSRECVGCFDLVHGN 239

Query: 239 ENQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDA 298
           EN R++KA+ KNDFL+DDVLALG GG+RIG DIGGGSG+FAARMA+RNVTV+T+TLNV+A
Sbjct: 240 ENVRFVKAKSKNDFLVDDVLALGGGGVRIGLDIGGGSGSFAARMADRNVTVVTSTLNVEA 299

Query: 299 PYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRA 358
           P+SEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGG+ EKLEF MFD DR+LRA
Sbjct: 300 PFSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGKSEKLEFFMFDIDRVLRA 359

Query: 359 GGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGE---TGKSEVYLSAVLQKPV 415
           GGLFWLDNF+CAN+EKK  LTRLIERFGYKKLKWVVGEK +   +GK EV LSAVLQKPV
Sbjct: 360 GGLFWLDNFFCANEEKKQVLTRLIERFGYKKLKWVVGEKVDSVGSGKPEVVLSAVLQKPV 419

Query: 416 R 416
           R
Sbjct: 420 R 420

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509686|ref|XP_003523577.1| PREDICTED: uncharacterized protein LOC100798510 [Glycine max]

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/422 (78%), Positives = 376/422 (89%), Gaps = 7/422 (1%)

Query: 1   MGSVSLKIGDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDGQIHSLIHN- 59
           MGSVSLKIGDGTARF+RAT+CSSA+NILM+FSV+TTNLFALYAF+SSPKD   HS +H  
Sbjct: 1   MGSVSLKIGDGTARFRRATVCSSAVNILMIFSVITTNLFALYAFSSSPKDP--HSHLHLL 58

Query: 60  HKNISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASELKLFLQHHQLPL 119
            KN SLISE V+LIL+EID SQKKLA++EK+LLGY+S+DLSRPNIA+ELKLFL HHQLPL
Sbjct: 59  DKNFSLISEQVTLILREIDMSQKKLAQIEKDLLGYESLDLSRPNIANELKLFLHHHQLPL 118

Query: 120 GKDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRR 179
           GKDS++GITEMV+SVGHSCEKS+DLL+QYM+YK  GPCP+DWS+AQKLIL+GCEPLPRRR
Sbjct: 119 GKDSKSGITEMVSSVGHSCEKSSDLLSQYMSYKAFGPCPNDWSVAQKLILKGCEPLPRRR 178

Query: 180 CFAKSVPKVGL-QSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPN 238
           CFAK++ KVGL   FP SLWK   +  V WSGLGCKN  CL  KKLSR+C+GCFDL N  
Sbjct: 179 CFAKTISKVGLLHPFPTSLWKAPVNNTVNWSGLGCKNFECLKGKKLSRDCIGCFDLVNGY 238

Query: 239 ENQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDA 298
           ENQR++K+R KNDFLIDDVLALGSGGIRIG D+GGGSG+FAA MAERNVTV+T+TLNVDA
Sbjct: 239 ENQRFVKSRSKNDFLIDDVLALGSGGIRIGLDVGGGSGSFAAVMAERNVTVVTSTLNVDA 298

Query: 299 PYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRA 358
           P+SEFIAARGLFPL+LSLDHRFPFYDN FDLV ASSGLD GG+ EKLEFLMFD DR+LRA
Sbjct: 299 PFSEFIAARGLFPLFLSLDHRFPFYDNAFDLVRASSGLDGGGREEKLEFLMFDIDRVLRA 358

Query: 359 GGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGE---TGKSEVYLSAVLQKPV 415
           GGLFWLDNFYC ++EKK ALTRLIERFGYKKLKWVVGEK +   +GKS+V LSAVL+KPV
Sbjct: 359 GGLFWLDNFYCVDEEKKRALTRLIERFGYKKLKWVVGEKADILGSGKSQVVLSAVLEKPV 418

Query: 416 RV 417
           RV
Sbjct: 419 RV 420

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564345|ref|XP_003550415.1| PREDICTED: uncharacterized protein LOC100812467 [Glycine max]

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/422 (79%), Positives = 377/422 (89%), Gaps = 7/422 (1%)

Query: 1   MGSVSLKIGDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDGQIHSLIHN- 59
           MGSVSLKIGDGTARF+RAT+CSSA+NILM+FSV+TTNLFALYAFT+SP   Q HSL+H+ 
Sbjct: 1   MGSVSLKIGDGTARFQRATLCSSAVNILMIFSVITTNLFALYAFTASPNQPQ-HSLLHHN 59

Query: 60  --HKNISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASELKLFLQHHQL 117
             HKNISLISE VSLIL+EID SQKKLA+MEKELLGY+SIDLSRPNIASELKLFLQ HQL
Sbjct: 60  NAHKNISLISEQVSLILREIDLSQKKLAQMEKELLGYESIDLSRPNIASELKLFLQRHQL 119

Query: 118 PLGKDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPR 177
           PLGKDSRTGITEMV SVGH+CEK++D L+Q+M YK+ G CPDDWS+AQKLIL+GCEPLPR
Sbjct: 120 PLGKDSRTGITEMVPSVGHTCEKNSDFLSQFMNYKVFGACPDDWSVAQKLILKGCEPLPR 179

Query: 178 RRCFAKSVPKVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNP 237
           RRCFAK+V K G   FP SLWKPV +K V WSGL CKN  CL  KKLSREC+GCFDL + 
Sbjct: 180 RRCFAKTVSKAGWYPFPDSLWKPVGNKTVNWSGLNCKNFECLNGKKLSRECIGCFDLVHG 239

Query: 238 NENQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVD 297
           NEN R++KA+ KNDFL+DDV+ALG GG+R+G DIGGGSG+FAARMA+RNVTV+T+TLNVD
Sbjct: 240 NENVRFVKAKSKNDFLVDDVMALGGGGVRVGLDIGGGSGSFAARMADRNVTVVTSTLNVD 299

Query: 298 APYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILR 357
           AP+SEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGG+ EKLEFLMFD DR+LR
Sbjct: 300 APFSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGKSEKLEFLMFDIDRVLR 359

Query: 358 AGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGE---TGKSEVYLSAVLQKP 414
           AGGLFWLDNF+CAN+EKK  LTRLIERFGYKKLKWVVGEK +   +GK EV LSAVLQKP
Sbjct: 360 AGGLFWLDNFFCANEEKKQTLTRLIERFGYKKLKWVVGEKVDSVGSGKPEVVLSAVLQKP 419

Query: 415 VR 416
           VR
Sbjct: 420 VR 421

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814964|ref|XP_002875365.1| hypothetical protein ARALYDRAFT_904944 [Arabidopsis lyrata subsp. lyrata] gi|297321203|gb|EFH51624.1| hypothetical protein ARALYDRAFT_904944 [Arabidopsis lyrata subsp. lyrata]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/417 (76%), Positives = 361/417 (86%), Gaps = 7/417 (1%)

Query: 1   MGSVSLKIGDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDGQIHSLIHNH 60
           MGSVSLKIGDGTARF+R +ICSSA+N+LMLFSVVTTNLFALYAF+S  +      L+HN 
Sbjct: 1   MGSVSLKIGDGTARFRRTSICSSAVNLLMLFSVVTTNLFALYAFSSHSQANS--PLLHNS 58

Query: 61  KNISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASELKLFLQHHQLPLG 120
            NISL+S+H+SLIL+EIDSSQ+KLA+MEK++LGY+SIDLSRPNI  ELKLFLQ HQLPLG
Sbjct: 59  NNISLVSQHLSLILREIDSSQRKLAQMEKQMLGYESIDLSRPNIVPELKLFLQRHQLPLG 118

Query: 121 KDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRRC 180
           KDSRTGITEMV+SVGHSCEKSADLL+QYM+YK+   CPDDWSL QKLILR CEPLPRRRC
Sbjct: 119 KDSRTGITEMVSSVGHSCEKSADLLSQYMSYKVFDRCPDDWSLGQKLILRACEPLPRRRC 178

Query: 181 FAKSVPKVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNEN 240
            AK+V K  L  +P SLW+ VS+K V WSGLGCK+  CL  KKLSRECVGCFDL   NE 
Sbjct: 179 LAKTVQKQDLSRWPDSLWRSVSNKSVNWSGLGCKSFDCLKGKKLSRECVGCFDLG--NEK 236

Query: 241 QRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPY 300
            R++K +GKNDFLIDDVL LGSG IRIGFD+ GGSGTFAARMAE+NVT+ITNTLN  AP+
Sbjct: 237 DRFVKVKGKNDFLIDDVLGLGSGKIRIGFDVSGGSGTFAARMAEKNVTIITNTLNNGAPF 296

Query: 301 SEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGG 360
           SEFIAARGLFPL+LSLDHRFPF DNVFDL+HASSGLDV G+ EKLEF+MFD DR+L+ GG
Sbjct: 297 SEFIAARGLFPLFLSLDHRFPFLDNVFDLIHASSGLDVEGKAEKLEFVMFDLDRVLKPGG 356

Query: 361 LFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPVRV 417
           LFWLDNFYCANDEKK  LTRLIERFGYKKLKWV+GEK +   ++VYLSAVLQKPVR 
Sbjct: 357 LFWLDNFYCANDEKKKDLTRLIERFGYKKLKWVIGEKAD---AQVYLSAVLQKPVRA 410

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	418
TAIR|locus:2086543	410	AT3G27230 [Arabidopsis thalian	0.976	0.995	0.724	3.2e-159
TAIR|locus:2164491	414	AT5G40830 [Arabidopsis thalian	0.985	0.995	0.684	6.5e-154
TAIR|locus:2079812	463	AT3G05390 [Arabidopsis thalian	0.732	0.660	0.382	5e-60
TAIR|locus:2125028	659	AT4G01240 [Arabidopsis thalian	0.894	0.567	0.350	7.3e-59
TAIR|locus:2019312	378	AT1G29790 [Arabidopsis thalian	0.660	0.730	0.383	2e-47

TAIR|locus:2086543 AT3G27230 [Arabidopsis thaliana (taxid:3702)]

 Score = 1551 (551.0 bits), Expect = 3.2e-159, P = 3.2e-159
 Identities = 302/417 (72%), Positives = 344/417 (82%)

Query:     1 MGSVSLKIGDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDGQIHS-LIHN 59
             MGSVSLKIGDGTARF+R +ICSSA+N+LMLFSVVTTNLFALYAF+S     Q +S L+H+
Sbjct:     1 MGSVSLKIGDGTARFRRTSICSSAVNLLMLFSVVTTNLFALYAFSSH---SQANSPLLHS 57

Query:    60 HKNISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASELKLFLQHHQLPL 119
               NISL+S+H+SLIL+EIDSSQ+KLA+MEK++LGY+SID+SRPNI  ELKLFLQ HQLPL
Sbjct:    58 SNNISLVSQHLSLILREIDSSQRKLAQMEKQMLGYESIDISRPNIVPELKLFLQRHQLPL 117

Query:   120 GKDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRR 179
             GKDSRTGITEMV+SVGHSC KS DLL+QYM+YK+   CPDDWSL QKLILR CEPLPRRR
Sbjct:   118 GKDSRTGITEMVSSVGHSCGKSTDLLSQYMSYKVFDRCPDDWSLGQKLILRACEPLPRRR 177

Query:   180 CFAKSVPKVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNE 239
             C AK+V K  L   P SLW+ VS+K V WSGLGCK+  CL  KKLS+ECVGCFDL    E
Sbjct:   178 CLAKTVQKQDLSKSPDSLWRSVSNKSVNWSGLGCKSFDCLKGKKLSKECVGCFDLGV--E 235

Query:   240 NQRYIKARGKNDFLIDDVLALXXXXXXXXXXXXXXXXTFAARMAERNVTVITNTLNVDAP 299
               R++K +GKNDFLIDDVL L                TFAARMAE+NVTVITNTLN  AP
Sbjct:   236 KDRFVKVKGKNDFLIDDVLGLGSGKIRIGFDISGGSGTFAARMAEKNVTVITNTLNNGAP 295

Query:   300 YSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAG 359
             +SEFIAARGLFPL+LSLDHRFPF DNVFDL+HASSGLDV G+ EKLEFLMFD DR+L+  
Sbjct:   296 FSEFIAARGLFPLFLSLDHRFPFLDNVFDLIHASSGLDVEGKAEKLEFLMFDLDRVLKPR 355

Query:   360 GLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPVR 416
             GLFWLDNFYCANDEKK  LTR+IERFGYKKLKWV+GEK +   ++VYLSAVLQKPVR
Sbjct:   356 GLFWLDNFYCANDEKKKELTRMIERFGYKKLKWVIGEKAD---AQVYLSAVLQKPVR 409

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2164491 AT5G40830 [Arabidopsis thaliana (taxid:3702)]

 Score = 1501 (533.4 bits), Expect = 6.5e-154, P = 6.5e-154
 Identities = 287/419 (68%), Positives = 337/419 (80%)

Query:     1 MGSVSLKIGDGTARFKRATICSSALNILMLFSVVTTNLFALYAFTSSPKDGQIHSLIHNH 60
             MGSVSLKIGDGTARFKR+T+ SSA+N+LMLFS+VTTNLFALYAF+S  +    H L H++
Sbjct:     1 MGSVSLKIGDGTARFKRSTLFSSAINLLMLFSIVTTNLFALYAFSSRSQSHTPHPL-HSN 59

Query:    61 KNISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASELKLFLQHHQLPLG 120
              N+SL+S+H+SLIL+EIDSS   L +MEK+++GY+S+DLS+  +  ELKLFLQ HQLPLG
Sbjct:    60 -NVSLVSQHLSLILREIDSSHHTLTQMEKQIIGYESLDLSQQEVPQELKLFLQQHQLPLG 118

Query:   121 KDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRRC 180
             KDSRTGIT+MVASVGHSCE S DLL+QYM+Y +   CPDDWSLAQKLILR CEPLPRRRC
Sbjct:   119 KDSRTGITQMVASVGHSCEMSLDLLSQYMSYNVFEKCPDDWSLAQKLILRACEPLPRRRC 178

Query:   181 FAKSVPKVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNEN 240
              AK+V K GL  FP SLW+PV +  V WSGLGCK+  CL  KKLSR+CVGCFDL   +E 
Sbjct:   179 LAKTVHKPGLALFPDSLWRPVGNSSVNWSGLGCKSFECLKGKKLSRDCVGCFDLATSHEK 238

Query:   241 QRYIKARGKNDFLIDDVLALXXXXXXXXXXXXXXXXTFAARMAERNVTVITNTLNVDAPY 300
              R++K  GK DFLIDDVL L                TFAARMAE+NV +I+NTLN+DAP+
Sbjct:   239 DRFVKVNGKTDFLIDDVLDLGDGKIRIGFDISSGSGTFAARMAEKNVNIISNTLNIDAPF 298

Query:   301 SEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLD--VGGQPEKLEFLMFDFDRILRA 358
             SEFIAARG+FPL++SLD R PFYDNVFDL+HAS+GLD  V  +PEKLEFLMFD DRIL+ 
Sbjct:   299 SEFIAARGIFPLFMSLDQRLPFYDNVFDLIHASNGLDLAVSNKPEKLEFLMFDLDRILKP 358

Query:   359 GGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPVRV 417
             GGLFWLDNFYC NDEKK  LTRLIERFGYKKLKWVVGEK +   +EV+LSAVLQKP R+
Sbjct:   359 GGLFWLDNFYCGNDEKKRVLTRLIERFGYKKLKWVVGEKTD---AEVFLSAVLQKPARI 414

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2079812 AT3G05390 [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 122/319 (38%), Positives = 186/319 (58%)

Query:   104 IASELKLFLQHHQLPLGKDSRTGITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSL 163
             +  E++ ++   +  +GK +  G   +  ++GH+C      L +YM Y +   C DDW+L
Sbjct:   150 LIEEIRQYITPKENRVGKINMFGTERVYNTIGHACALMKMELEKYMDYDVGAYCDDDWNL 209

Query:   164 AQKLILRGCEPLPRRRCFAKSVPKVGLQSFPV--SLWKPVSDKIVTWSGLGCKNLSCLIS 221
             AQKL+L GC+PLPRRRC  ++      + +P+  SLWK   D+ V W    C+N +CL S
Sbjct:   210 AQKLMLNGCDPLPRRRCLTRA-SMTYQKPYPINESLWKLPDDRNVRWGNYQCRNFACLSS 268

Query:   222 KKLSR---ECVGCFDLDNPNENQRYIKARGKN-DFLIDDVLALXXXXXXXXXXXXXXXXT 277
             K   R   +C GCF+++   E  +++K      DF+I+DVL +                T
Sbjct:   269 KNPKRGYTKCSGCFEMEK--EKDKWVKNSSLLVDFMIEDVLRVKPSEIRIGLDYGVGTGT 326

Query:   278 FAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLD 337
             FAARM E+NVT++T  LN+ AP++E IA RGL PLY+SL+ R PF+DN  D++H +  +D
Sbjct:   327 FAARMREKNVTIVTTALNLGAPFNEMIALRGLIPLYISLNQRLPFFDNTMDMIHTTGLMD 386

Query:   338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEK 397
                    ++F+++D+DR+LR GGL W+D F+C   +    +   ++ F YKK KW +  K
Sbjct:   387 GWIDLLLMDFVLYDWDRVLRPGGLLWIDRFFCKKKDLDDYMYMFLQ-FRYKKHKWAISPK 445

Query:   398 GETGKSEVYLSAVLQKPVR 416
                 K EVYLSA+L+KP R
Sbjct:   446 S---KDEVYLSALLEKPPR 461

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2125028 AT4G01240 [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 139/397 (35%), Positives = 221/397 (55%)

Query:    37 NLFALYAFTSSPKDGQIHSLIHNHKNISLISEHVSLILK---EIDSSQKKLAKMEKELLG 93
             +L AL A +S+P      +     ++++ +++ +SL+     E+ S +++   +    L 
Sbjct:   266 DLKALEANSSTPPSSVSSASGSMFRHVAFLADVLSLVQSVHMELPSFEER--SVADHPLK 323

Query:    94 YQSIDLSRPNIASELKLFLQHHQLPLGKDSRTGITEMVASVGHSCEKSADLLTQYMTYKL 153
              Q  D     +  E+K +++     LGK +  G      S+GH+C      L +YM Y +
Sbjct:   324 QQKGDPGEHFMREEIKKYIKIKPNRLGKQNFMGANGTFTSIGHACFAMKKDLEEYMDYDV 383

Query:   154 SGPCPDDWSLAQKLILRGCEPLPRRRCFAKSVPKVGLQSFPV--SLWKPVSDKIVTWSGL 211
                C DDW LAQKL++ GC+PLPRRRCF++  P++  + FP+  SLWK   ++ V W   
Sbjct:   384 GEICNDDWRLAQKLMVHGCDPLPRRRCFSRG-PQLYHKPFPINESLWKLPDNRNVRWGQY 442

Query:   212 GCKNLSCLISKKLSRE----CVGCFDLDNPNENQRYIKARGK-----N---DFLIDDVLA 259
              CKN +CL S   +R+    C  CF+L + +E+ R++  RG+     N   DF I +VL 
Sbjct:   443 KCKNFACLASNTTARKGFFKCTDCFNLTH-HESPRWLN-RGEIDPETNQTADFSIAEVLE 500

Query:   260 LXXXXXXXXXXXXXXXXTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHR 319
             +                TFAARM E+NVT+++ T+N+ AP++E IA RGL PLYL+++ R
Sbjct:   501 IKPGEIRIGLDFSIGTGTFAARMREQNVTIVSATINLGAPFNEMIALRGLVPLYLTVNQR 560

Query:   320 FPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALT 379
              PF+D+  D++H +  LD       L+F++FD+DR+LR GGL W+D F+C  ++    + 
Sbjct:   561 LPFFDSTLDMIHTTRFLDGWIDLILLDFVLFDWDRVLRPGGLLWIDGFFCLKEDVSDYM- 619

Query:   380 RLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPVR 416
                +   Y+K KWVV  K +    EV+ SAVL+KP R
Sbjct:   620 EAFKALRYRKHKWVVVPKKDKDDKEVFFSAVLEKPPR 656

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2019312 AT1G29790 [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 112/292 (38%), Positives = 155/292 (53%)

Query:   127 ITEMVASVGHSCEKSADLLTQYMTYKLSGPCPDDWSLAQKLILRGCEPLPRRRCFAKSVP 186
             I   ++ +  +C    DLL +YM Y     CP D  L +KLILRGC PLPRRRCF+++ P
Sbjct:    98 IYSKLSPIASACHNYPDLLHEYMNYTPFSLCPSDTDLVEKLILRGCHPLPRRRCFSRT-P 156

Query:   187 KVGLQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNENQRYIKA 246
             +    S      KP S+  V WS   CK+  CLI+K      +G FDL       ++   
Sbjct:   157 RNPSDS------KPESN--VLWSYYSCKSFDCLITKFSD---LG-FDLSLEKSKSQFSAY 204

Query:   247 RGKNDFLIDDVLALXXXXXXXXXXXXXX---XXTFAARMAERNVTVITNTLNVDAPYSEF 303
             + + D  I  +L +                   +FAA M  RNVTV+T T+N +APYSE 
Sbjct:   205 KSELDLPISQLLQIAKSANSVLRLGIDVGGGTGSFAAAMKARNVTVLTTTMNFNAPYSEA 264

Query:   304 IAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFW 363
             +A RGL PL++ L  R P +D V DLV     ++       +EF  FD DRILR GG  W
Sbjct:   265 VAMRGLVPLHVPLQQRLPVFDGVVDLVRCGRAVNRWIPVTVMEFFFFDLDRILRGGGYLW 324

Query:   364 LDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPV 415
             LD F+    + ++    +I + GYKK+KW V  K ++   EV+L+A+LQKPV
Sbjct:   325 LDRFFSKKVDLENVYAPMIGKLGYKKVKWAVANKADSKHGEVFLTALLQKPV 376

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0002064101 hypothetical protein (420 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	418
pfam03141	506	pfam03141, Methyltransf_29, Putative S-adenosyl-L-	3e-07
pfam03141	506	pfam03141, Methyltransf_29, Putative S-adenosyl-L-	2e-05

>gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 42/174 (24%), Positives = 66/174 (37%), Gaps = 46/174 (26%)

Query: 262 SGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSE------FIAARGLFPLYLS 315
            G +R   D+G G  +F A +  R+V     T++  AP         F   RG  P  L 
Sbjct: 115 GGRVRTALDVGCGVASFGAYLLSRDVL----TMSF-APKDVHEAQVQFALERG-VPAMLG 168

Query: 316 L--DHRFPFYDNVFDLVHASS-----GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY 368
           +    R P+    FD+ H S        + G        L+ + DR+LR GG +++ +  
Sbjct: 169 VLGTRRLPYPSRSFDMAHCSRCLIPWHANDG-------ILLLEVDRVLRPGG-YFVLSGP 220

Query: 369 CANDEKKSALTR-------LIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPV 415
                 +  L         L +   +K     V +KG+         A+ QKPV
Sbjct: 221 PVYARDEEDLQEEWKAMEALAKSLCWKL----VAKKGDI--------AIWQKPV 262

This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506

>gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 2/104 (1%)

Query: 258 LALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYS-EFIAARGLFPLYLSL 316
           L +  G +R   D+  G G FAA + +  V V+ N + VD+P +   I  RGL  +Y   
Sbjct: 359 LLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVM-NVVPVDSPDTLPVIYDRGLIGIYHDW 417

Query: 317 DHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGG 360
              F  Y   +DL+HA     +  +   LE ++ + DRILR GG
Sbjct: 418 CEPFSTYPRTYDLLHADHLFSLYKKRCNLEDILLEMDRILRPGG 461

This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	418
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	100.0
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	99.97
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.76
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.71
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.7
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.7
PLN02244	340	tocopherol O-methyltransferase	99.62
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.59
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.58
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.57
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.56
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.55
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.55
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.54
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.53
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.52
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.51
PRK11207	197	tellurite resistance protein TehB; Provisional	99.51
PLN02490	340	MPBQ/MSBQ methyltransferase	99.51
PRK05785	226	hypothetical protein; Provisional	99.49
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.49
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.49
PLN02336	475	phosphoethanolamine N-methyltransferase	99.48
PRK08317	241	hypothetical protein; Provisional	99.43
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.42
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.41
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.4
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.4
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.39
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.38
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.38
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.38
PRK12335	287	tellurite resistance protein TehB; Provisional	99.37
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.35
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.35
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.34
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.34
PRK04266	226	fibrillarin; Provisional	99.33
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.33
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.32
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.3
PLN02336	475	phosphoethanolamine N-methyltransferase	99.29
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.28
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.28
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.26
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.26
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.24
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.24
PRK06202	232	hypothetical protein; Provisional	99.23
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.23
PRK06922	677	hypothetical protein; Provisional	99.23
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.22
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.22
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.22
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.21
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.21
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.21
KOG4300	252	consensus Predicted methyltransferase [General fun	99.2
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.2
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.19
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.19
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.18
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.18
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.18
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.17
PRK14968	188	putative methyltransferase; Provisional	99.15
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.13
PTZ00146	293	fibrillarin; Provisional	99.12
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.12
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.11
KOG3010	261	consensus Methyltransferase [General function pred	99.08
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.08
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.07
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.07
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.07
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.06
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.06
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.05
KOG2361	264	consensus Predicted methyltransferase [General fun	99.04
TIGR00438	188	rrmJ cell division protein FtsJ.	99.04
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.03
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.03
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.02
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.01
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.01
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.99
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.98
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.98
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.97
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.94
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.92
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.91
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.91
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.89
PRK14967	223	putative methyltransferase; Provisional	98.89
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.88
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.88
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.87
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.87
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.86
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.85
PLN03075	296	nicotianamine synthase; Provisional	98.83
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.82
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.82
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.81
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.8
KOG1271	227	consensus Methyltransferases [General function pre	98.8
TIGR03438	301	probable methyltransferase. This model represents	98.78
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.75
PRK07402	196	precorrin-6B methylase; Provisional	98.75
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.74
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.73
KOG2940	325	consensus Predicted methyltransferase [General fun	98.73
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.73
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.72
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.72
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.71
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.71
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.67
PHA03411	279	putative methyltransferase; Provisional	98.63
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.61
PRK00811	283	spermidine synthase; Provisional	98.61
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.59
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.59
COG4123	248	Predicted O-methyltransferase [General function pr	98.58
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.57
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.55
PRK04457	262	spermidine synthase; Provisional	98.54
COG2890	280	HemK Methylase of polypeptide chain release factor	98.54
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.52
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.51
PRK01581	374	speE spermidine synthase; Validated	98.47
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.46
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.43
PRK03612	521	spermidine synthase; Provisional	98.43
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.38
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.34
PLN02366	308	spermidine synthase	98.32
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.31
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.28
COG2521	287	Predicted archaeal methyltransferase [General func	98.28
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.25
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.23
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.22
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.19
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.19
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.18
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.16
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.15
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.15
KOG2899	288	consensus Predicted methyltransferase [General fun	98.14
PLN02672	1082	methionine S-methyltransferase	98.1
PHA03412	241	putative methyltransferase; Provisional	98.09
KOG1331	293	consensus Predicted methyltransferase [General fun	98.07
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.06
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.05
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.03
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.02
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.0
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.99
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.99
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.89
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.88
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.88
PRK04148	134	hypothetical protein; Provisional	97.87
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.86
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.82
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.82
PLN02476	278	O-methyltransferase	97.81
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.81
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.75
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.74
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.74
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.73
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.7
KOG2904	328	consensus Predicted methyltransferase [General fun	97.69
COG4122	219	Predicted O-methyltransferase [General function pr	97.68
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.67
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.66
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.61
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.57
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.57
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.48
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.45
PLN02823	336	spermine synthase	97.44
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.39
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.31
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.27
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.21
PLN02589	247	caffeoyl-CoA O-methyltransferase	97.19
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.18
PRK00536	262	speE spermidine synthase; Provisional	97.18
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.17
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.14
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.13
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.05
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.03
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.97
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	96.94
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	96.89
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.86
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	96.85
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	96.79
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	96.74
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	96.67
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.6
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	96.6
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.55
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	96.53
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.47
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	96.46
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.45
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.45
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.38
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.35
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	96.34
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.18
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	96.14
COG2520	341	Predicted methyltransferase [General function pred	96.07
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.05
PRK13699	227	putative methylase; Provisional	96.04
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	95.94
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	95.79
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	95.76
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	95.7
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	95.6
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	95.5
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	95.32
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	95.25
COG4798	238	Predicted methyltransferase [General function pred	95.25
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	95.1
PF13679	141	Methyltransf_32: Methyltransferase domain	95.04
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	94.97
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	94.94
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	94.76
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	94.59
KOG3201	201	consensus Uncharacterized conserved protein [Funct	94.48
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	94.38
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	94.33
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	94.29
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	94.16
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	94.05
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	93.77
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	93.69
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	93.64
PLN02668	386	indole-3-acetate carboxyl methyltransferase	93.54
COG2265	432	TrmA SAM-dependent methyltransferases related to t	93.49
COG0742	187	N6-adenine-specific methylase [DNA replication, re	93.42
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	93.3
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	92.93
PF03269	177	DUF268: Caenorhabditis protein of unknown function	92.92
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	92.91
PRK11524	284	putative methyltransferase; Provisional	92.81
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	92.79
KOG3115	249	consensus Methyltransferase-like protein [General	92.59
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	92.37
COG3897	218	Predicted methyltransferase [General function pred	92.07
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	91.8
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	91.75
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	91.66
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	90.53
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	90.52
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	90.44
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	89.68
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	89.58
COG4262	508	Predicted spermidine synthase with an N-terminal m	89.09
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	88.36
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	87.93
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	87.38
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	87.22
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	86.77
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	86.46
PRK10742	250	putative methyltransferase; Provisional	84.83
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	84.02
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	83.8
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	83.58
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	81.73
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	81.49
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	81.42
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	80.95
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	80.48
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	80.3
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	80.08

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=100.00  E-value=6.8e-51  Score=419.64  Aligned_cols=235  Identities=29%  Similarity=0.473  Sum_probs=200.0

Q ss_pred             CCCCCCCcHHHHH--------HhhhcCCCCC-CCCCcccCCCCCCC-CCCCCCCCCCCCCCCeeeeCCCcccCchhhhhc
Q 037675          153 LSGPCPDDWSLAQ--------KLILRGCEPL-PRRRCFAKSVPKVG-LQSFPVSLWKPVSDKIVTWSGLGCKNLSCLISK  222 (418)
Q Consensus       153 ~~~~C~d~~~~~~--------~l~~r~C~p~-p~~~C~~~~p~~~~-~~p~P~~l~~~~~~~~v~~~~~~~~~~~cl~~~  222 (418)
                      +|+||.|.....+        ...+|||||. ++.+||+|+|++|+ |.|||+      ||+.||++|++|+.   |+++
T Consensus         1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~------SRd~iW~~Nvph~~---L~~~   71 (506)
T PF03141_consen    1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPK------SRDYIWYANVPHTK---LAEE   71 (506)
T ss_pred             CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCc------ccceeeecccCchH---Hhhh
Confidence            6899999974221        1246999884 47799999999999 777877      79999999999998   9999


Q ss_pred             cccccccccCcccCcccccccccccCCcHH---------HHHHHHcc--CCCCCCeEEEECCccChHHHHHhhcCcEEEE
Q 037675          223 KLSRECVGCFDLDNPNENQRYIKARGKNDF---------LIDDVLAL--GSGGIRIGFDIGGGSGTFAARMAERNVTVIT  291 (418)
Q Consensus       223 ~~~~~~~~~Fdlw~~~e~~~W~~~~~~y~~---------~I~~lL~l--~~g~~r~VLDvGCGtG~faa~La~~gV~vv~  291 (418)
                      |+.||       |+..++++|.||+|+++|         .|++++++  ..|.+|++||||||+|+||++|.++||++|+
T Consensus        72 K~~qn-------Wv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s  144 (506)
T PF03141_consen   72 KADQN-------WVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMS  144 (506)
T ss_pred             ccccc-------ceeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEE
Confidence            99999       999999999999998776         46777777  7789999999999999999999999999999


Q ss_pred             ec-cCCCHHhHHHHHHcCCCceeec--ccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          292 NT-LNVDAPYSEFIAARGLFPLYLS--LDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       292 ~a-lD~s~~~l~~a~eRGli~~~~~--~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      ++ .|.+++|+|+|.|||+ |.+++  ..++||||+++||+|||++|+..|...++  .+|.|++||||||||||++.+-
T Consensus       145 ~a~~d~~~~qvqfaleRGv-pa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g--~~l~evdRvLRpGGyfv~S~pp  221 (506)
T PF03141_consen  145 FAPNDEHEAQVQFALERGV-PAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDG--FLLFEVDRVLRPGGYFVLSGPP  221 (506)
T ss_pred             cccccCCchhhhhhhhcCc-chhhhhhccccccCCccchhhhhcccccccchhccc--ceeehhhhhhccCceEEecCCc
Confidence            98 6789999999999998 77765  47999999999999999999999998876  7999999999999999999984


Q ss_pred             cC---chh---HHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEEEEEcCCCCC
Q 037675          369 CA---NDE---KKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPVRVS  418 (418)
Q Consensus       369 ~~---~ee---~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qKP~~~s  418 (418)
                      ..   .++   .++.++.+++.+||+.+    .++.+        +||||||.++|
T Consensus       222 v~~r~~~~~~~~~~~~~~l~~~lCW~~v----a~~~~--------~aIwqKp~~~~  265 (506)
T PF03141_consen  222 VYQRTDEDLEEEWNAMEDLAKSLCWKKV----AEKGD--------TAIWQKPTNNS  265 (506)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHh----eeeCC--------EEEEeccCCch
Confidence            33   223   33456677777777666    44443        99999999764

; GO: 0008168 methyltransferase activity

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=99.97  E-value=4.1e-31  Score=273.31  Aligned_cols=240  Identities=23%  Similarity=0.304  Sum_probs=183.1

Q ss_pred             cccccccccHHHHHhhhcCCCCCCCC--CcHHHHHHhhhcCC-CCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCeeeeC
Q 037675          133 SVGHSCEKSADLLTQYMTYKLSGPCP--DDWSLAQKLILRGC-EPLPRRRCFAKSVPKVGLQSFPVSLWKPVSDKIVTWS  209 (418)
Q Consensus       133 ~~~~~C~~~~~~l~~~~~y~~~~~C~--d~~~~~~~l~~r~C-~p~p~~~C~~~~p~~~~~~p~P~~l~~~~~~~~v~~~  209 (418)
                      |..++|...     + -..+....|.  ||.+.+|+..++.| +|+|....-   -.+..+.+||+||.++|+|..-.  
T Consensus       261 p~~~~Cy~~-----r-~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~---~~~~~~~~WP~RL~~~P~rl~~~--  329 (506)
T PF03141_consen  261 PTNNSCYQK-----R-KPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSE---IAGGWLPKWPERLNAVPPRLSSG--  329 (506)
T ss_pred             cCCchhhhh-----c-cCCCCCCCCCCCCCCcchhhcchhhhcCcCCccccc---ccccCCCCChhhhccCchhhhcC--
Confidence            456789832     1 0134567898  34468899999999 887754220   11223789999999999986421  


Q ss_pred             CCcccCchhhhhccccccccccCcccCcccccccccccCCcHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEE
Q 037675          210 GLGCKNLSCLISKKLSRECVGCFDLDNPNENQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTV  289 (418)
Q Consensus       210 ~~~~~~~~cl~~~~~~~~~~~~Fdlw~~~e~~~W~~~~~~y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~v  289 (418)
                        ..        .+...+       -+..|.++|......|..++.  +.+..+++|+||||++|+|+|||+|.+.+|||
T Consensus       330 --~~--------~g~~~e-------~F~~Dt~~Wk~~V~~Y~~l~~--~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWV  390 (506)
T PF03141_consen  330 --SI--------PGISPE-------EFKEDTKHWKKRVSHYKKLLG--LAIKWGRIRNVMDMNAGYGGFAAALIDDPVWV  390 (506)
T ss_pred             --Cc--------CCCCHH-------HHHHHHHHHHHHHHHHHHhhc--ccccccceeeeeeecccccHHHHHhccCCceE
Confidence              00        111111       246799999999888887654  34788999999999999999999999999999


Q ss_pred             EEeccC-CCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          290 ITNTLN-VDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       290 v~~alD-~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      | +++. ..++++.++++||+++.+|+|||.||++++|||+||+.++|..+.++++++.+|.||+|||||||++||.|..
T Consensus       391 M-NVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~  469 (506)
T PF03141_consen  391 M-NVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV  469 (506)
T ss_pred             E-EecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence            9 5544 4578999999999999999999999999999999999999999999999999999999999999999998764


Q ss_pred             cCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEE
Q 037675          369 CANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSA  409 (418)
Q Consensus       369 ~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~A  409 (418)
                      .    .-..++.+++.+.|+..-++...+  +...|.+|.+
T Consensus       470 ~----vl~~v~~i~~~lrW~~~~~d~e~g--~~~~EkiL~~  504 (506)
T PF03141_consen  470 D----VLEKVKKIAKSLRWEVRIHDTEDG--PDGPEKILIC  504 (506)
T ss_pred             H----HHHHHHHHHHhCcceEEEEecCCC--CCCCceEEEE
Confidence            3    233467788887777665544222  2346777763

; GO: 0008168 methyltransferase activity

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.76  E-value=1.2e-17  Score=161.05  Aligned_cols=124  Identities=22%  Similarity=0.355  Sum_probs=102.3

Q ss_pred             CeEEEECCccChHHHHHhhc-C-cEEEEeccCCCHHhHHHHHHcCC------CceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAER-N-VTVITNTLNVDAPYSEFIAARGL------FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-g-V~vv~~alD~s~~~l~~a~eRGl------i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||||.++..+++. | ..+  +++|+|+.|++.+++|-.      +.++++++++|||+|++||+|.++..|+
T Consensus        53 ~~vLDva~GTGd~a~~~~k~~g~g~v--~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr  130 (238)
T COG2226          53 DKVLDVACGTGDMALLLAKSVGTGEV--VGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR  130 (238)
T ss_pred             CEEEEecCCccHHHHHHHHhcCCceE--EEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence            59999999999999999987 3 344  358999999999988743      3467899999999999999999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccCc----------------------------hh------------HHHH
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN----------------------------DE------------KKSA  377 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~----------------------------ee------------~~~~  377 (418)
                      +..+.+   ++|.|++|||||||.+++.++....                            +.            ..++
T Consensus       131 nv~d~~---~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~  207 (238)
T COG2226         131 NVTDID---KALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEE  207 (238)
T ss_pred             cCCCHH---HHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHH
Confidence            998765   9999999999999999888762211                            00            1256


Q ss_pred             HHHHHHHcCcEEEEEEE
Q 037675          378 LTRLIERFGYKKLKWVV  394 (418)
Q Consensus       378 ~~~l~~~~Gfk~l~W~~  394 (418)
                      +..+++..||+.+.|..
T Consensus       208 l~~~~~~~gf~~i~~~~  224 (238)
T COG2226         208 LKQMIEKAGFEEVRYEN  224 (238)
T ss_pred             HHHHHHhcCceEEeeEe
Confidence            88889999999998754

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.71  E-value=2.2e-17  Score=132.64  Aligned_cols=91  Identities=30%  Similarity=0.418  Sum_probs=75.8

Q ss_pred             EEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCC---ceeecccCCCCCCCCccceEEecCcCcCCCChhH
Q 037675          269 FDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLF---PLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEK  344 (418)
Q Consensus       269 LDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli---~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~  344 (418)
                      ||+|||+|.++..|+++ +..++  ++|+++++++.++++...   ....++.+++||++++||+|++..+++++.   +
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~--~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~---~   75 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVT--GIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE---D   75 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEE--EEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS---H
T ss_pred             CEecCcCCHHHHHHHhccCCEEE--EEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc---C
Confidence            89999999999999999 66665  479999999999887542   366689999999999999999999999993   3


Q ss_pred             HHHHHHHhhccccCCcEEEE
Q 037675          345 LEFLMFDFDRILRAGGLFWL  364 (418)
Q Consensus       345 le~~L~Ei~RVLRPGG~~ii  364 (418)
                      ...++.|+.|+|||||+++|
T Consensus        76 ~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   76 PEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCcCeEEeC
Confidence            45999999999999999975

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.70  E-value=4.1e-17  Score=157.10  Aligned_cols=105  Identities=27%  Similarity=0.391  Sum_probs=75.8

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCcc
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVF  327 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sF  327 (418)
                      .+...+|  .+|||+|||||.++..++++ +  ..+  +++|+|+.|++.++++    +.  +.+..++++++||++++|
T Consensus        42 ~~~~~~g--~~vLDv~~GtG~~~~~l~~~~~~~~~v--~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sf  117 (233)
T PF01209_consen   42 LLGLRPG--DRVLDVACGTGDVTRELARRVGPNGKV--VGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSF  117 (233)
T ss_dssp             HHT--S----EEEEET-TTSHHHHHHGGGSS---EE--EEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-E
T ss_pred             ccCCCCC--CEEEEeCCChHHHHHHHHHHCCCccEE--EEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCce
Confidence            3445555  49999999999999999876 3  344  3589999999998775    22  456678999999999999


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      |.|.++..+++..+..   .+|.|+.|||||||.++|.++.
T Consensus       118 D~v~~~fglrn~~d~~---~~l~E~~RVLkPGG~l~ile~~  155 (233)
T PF01209_consen  118 DAVTCSFGLRNFPDRE---RALREMYRVLKPGGRLVILEFS  155 (233)
T ss_dssp             EEEEEES-GGG-SSHH---HHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEEHHhhHHhhCCHH---HHHHHHHHHcCCCeEEEEeecc
Confidence            9999999999987655   8999999999999999988863

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.70  E-value=1.8e-16  Score=154.56  Aligned_cols=129  Identities=21%  Similarity=0.221  Sum_probs=100.6

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc-Cc--EEEEeccCCCHHhHHHHHHcC---------CCceeecccCCCCCCCC
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER-NV--TVITNTLNVDAPYSEFIAARG---------LFPLYLSLDHRFPFYDN  325 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~-gV--~vv~~alD~s~~~l~~a~eRG---------li~~~~~~~e~LPf~d~  325 (418)
                      +.+.++  .+|||+|||+|.++..|+++ +.  .+  .++|++++|++.|+++.         -+.+..++++++|++++
T Consensus        69 ~~~~~~--~~VLDlGcGtG~~~~~la~~~~~~~~V--~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~  144 (261)
T PLN02233         69 SGAKMG--DRVLDLCCGSGDLAFLLSEKVGSDGKV--MGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDC  144 (261)
T ss_pred             hCCCCC--CEEEEECCcCCHHHHHHHHHhCCCCEE--EEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCC
Confidence            345444  48999999999999998876 42  44  35899999999887652         12456688999999999


Q ss_pred             ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc--------------------------h-------
Q 037675          326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN--------------------------D-------  372 (418)
Q Consensus       326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--------------------------e-------  372 (418)
                      +||+|+++.++|++.++.   .++.|+.|+|||||++++.++....                          +       
T Consensus       145 sfD~V~~~~~l~~~~d~~---~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~  221 (261)
T PLN02233        145 YFDAITMGYGLRNVVDRL---KAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKS  221 (261)
T ss_pred             CEeEEEEecccccCCCHH---HHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHH
Confidence            999999999999987655   8999999999999999888753211                          0       


Q ss_pred             -----hHHHHHHHHHHHcCcEEEEEE
Q 037675          373 -----EKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       373 -----e~~~~~~~l~~~~Gfk~l~W~  393 (418)
                           ...+++..+++..||+.+++.
T Consensus       222 s~~~f~s~~el~~ll~~aGF~~~~~~  247 (261)
T PLN02233        222 SINEYLTGEELEKLALEAGFSSAKHY  247 (261)
T ss_pred             HHHhcCCHHHHHHHHHHCCCCEEEEE
Confidence                 012467789999999988643

>PLN02244 tocopherol O-methyltransferase

Probab=99.62  E-value=7.2e-15  Score=148.52  Aligned_cols=123  Identities=21%  Similarity=0.299  Sum_probs=97.9

Q ss_pred             CCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCccceEEecCcC
Q 037675          265 IRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNVFDLVHASSGL  336 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L  336 (418)
                      ..+|||||||+|.++..|+++ +..++  ++|+++.|++.+++    +|+   +.+..+++..+||++++||+|++..++
T Consensus       119 ~~~VLDiGCG~G~~~~~La~~~g~~v~--gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~  196 (340)
T PLN02244        119 PKRIVDVGCGIGGSSRYLARKYGANVK--GITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG  196 (340)
T ss_pred             CCeEEEecCCCCHHHHHHHHhcCCEEE--EEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence            358999999999999999986 66664  47999999987654    344   345567888999999999999999999


Q ss_pred             cCCCChhHHHHHHHHhhccccCCcEEEEEecccC----c------hh-----------------HHHHHHHHHHHcCcEE
Q 037675          337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA----N------DE-----------------KKSALTRLIERFGYKK  389 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~----~------ee-----------------~~~~~~~l~~~~Gfk~  389 (418)
                      +|+.+..   .++.|+.|+|||||+|+|.++...    .      .+                 ..+++..+++++||..
T Consensus       197 ~h~~d~~---~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~  273 (340)
T PLN02244        197 EHMPDKR---KFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQD  273 (340)
T ss_pred             hccCCHH---HHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCe
Confidence            9987654   899999999999999998765221    0      00                 1246888999999998


Q ss_pred             EEE
Q 037675          390 LKW  392 (418)
Q Consensus       390 l~W  392 (418)
                      ++.
T Consensus       274 v~~  276 (340)
T PLN02244        274 IKT  276 (340)
T ss_pred             eEe
Confidence            764

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.59  E-value=1e-14  Score=128.54  Aligned_cols=130  Identities=24%  Similarity=0.381  Sum_probs=97.9

Q ss_pred             HHHHHHHHc-cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccce
Q 037675          251 DFLIDDVLA-LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDL  329 (418)
Q Consensus       251 ~~~I~~lL~-l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDl  329 (418)
                      ...+.++.+ ...  ..+|||+|||+|.++..|++.+..++  ++|+++.+++.   +.. .......+..++++++||+
T Consensus        10 ~~~~~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~~--g~D~~~~~~~~---~~~-~~~~~~~~~~~~~~~~fD~   81 (161)
T PF13489_consen   10 ADLLERLLPRLKP--GKRVLDIGCGTGSFLRALAKRGFEVT--GVDISPQMIEK---RNV-VFDNFDAQDPPFPDGSFDL   81 (161)
T ss_dssp             HHHHHHHHTCTTT--TSEEEEESSTTSHHHHHHHHTTSEEE--EEESSHHHHHH---TTS-EEEEEECHTHHCHSSSEEE
T ss_pred             HHHHHHHhcccCC--CCEEEEEcCCCCHHHHHHHHhCCEEE--EEECCHHHHhh---hhh-hhhhhhhhhhhccccchhh
Confidence            345666654 333  35999999999999999999988765  58999999887   222 2222223355678999999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-----------hh---------HHHHHHHHHHHcCcEE
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-----------DE---------KKSALTRLIERFGYKK  389 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-----------ee---------~~~~~~~l~~~~Gfk~  389 (418)
                      |+|..+|+|..+   ...+|.++.++|||||++++.++....           ..         ..+.+..++++.||+.
T Consensus        82 i~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~i  158 (161)
T PF13489_consen   82 IICNDVLEHLPD---PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEI  158 (161)
T ss_dssp             EEEESSGGGSSH---HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEE
T ss_pred             HhhHHHHhhccc---HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEE
Confidence            999999999975   449999999999999999998875310           00         1367999999999987


Q ss_pred             EE
Q 037675          390 LK  391 (418)
Q Consensus       390 l~  391 (418)
                      ++
T Consensus       159 v~  160 (161)
T PF13489_consen  159 VE  160 (161)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

...

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.58  E-value=2.1e-14  Score=138.75  Aligned_cols=122  Identities=18%  Similarity=0.204  Sum_probs=97.4

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChh
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPE  343 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~  343 (418)
                      .+|||+|||+|.++..|+++  +..++  ++|+++.|++.++++++ .+..++.+.++ ++++||+|+++.++||..++.
T Consensus        31 ~~vLDlGcG~G~~~~~l~~~~p~~~v~--gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~  106 (255)
T PRK14103         31 RRVVDLGCGPGNLTRYLARRWPGAVIE--ALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVVVSNAALQWVPEHA  106 (255)
T ss_pred             CEEEEEcCCCCHHHHHHHHHCCCCEEE--EEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEEEEehhhhhCCCHH
Confidence            58999999999999999987  45553  58999999999999875 77778888775 678999999999999986654


Q ss_pred             HHHHHHHHhhccccCCcEEEEEecc------------------cCc---h---------hHHHHHHHHHHHcCcEEEEEE
Q 037675          344 KLEFLMFDFDRILRAGGLFWLDNFY------------------CAN---D---------EKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       344 ~le~~L~Ei~RVLRPGG~~ii~~~~------------------~~~---e---------e~~~~~~~l~~~~Gfk~l~W~  393 (418)
                         .++.++.|+|||||++++..+.                  +..   .         ...+.+..+++.+||+...|.
T Consensus       107 ---~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~  183 (255)
T PRK14103        107 ---DLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDAWE  183 (255)
T ss_pred             ---HHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEEEe
Confidence               8999999999999999886321                  000   0         013568889999999876666


Q ss_pred             E
Q 037675          394 V  394 (418)
Q Consensus       394 ~  394 (418)
                      .
T Consensus       184 ~  184 (255)
T PRK14103        184 T  184 (255)
T ss_pred             e
Confidence            5

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.57  E-value=1.9e-14  Score=140.62  Aligned_cols=131  Identities=15%  Similarity=0.209  Sum_probs=101.0

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCCccceEEe
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDNVFDLVHA  332 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~sFDlV~s  332 (418)
                      +.+.++  .+|||+|||+|..+.+|++. +..++  ++|+++.|++.++++.    .+.+..+++...|+++++||+|++
T Consensus        48 l~l~~~--~~VLDiGcG~G~~a~~la~~~~~~v~--giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s  123 (263)
T PTZ00098         48 IELNEN--SKVLDIGSGLGGGCKYINEKYGAHVH--GVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYS  123 (263)
T ss_pred             CCCCCC--CEEEEEcCCCChhhHHHHhhcCCEEE--EEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEE
Confidence            345554  48999999999999999875 55654  5899999999988763    234455677888999999999999


Q ss_pred             cCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-----hh-------------HHHHHHHHHHHcCcEEEEEE
Q 037675          333 SSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-----DE-------------KKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       333 ~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-----ee-------------~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      ..+++|+.. .+...++.++.|+|||||+|++.++....     +.             ..+.|..+++.+||+.+.+.
T Consensus       124 ~~~l~h~~~-~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~  201 (263)
T PTZ00098        124 RDAILHLSY-ADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK  201 (263)
T ss_pred             hhhHHhCCH-HHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence            888877642 24568999999999999999998863221     10             12568899999999998754

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.56  E-value=2.5e-14  Score=138.05  Aligned_cols=103  Identities=24%  Similarity=0.337  Sum_probs=84.2

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhc-C-------cEEEEeccCCCHHhHHHHHHc----CC-----CceeecccCCCCC
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAER-N-------VTVITNTLNVDAPYSEFIAAR----GL-----FPLYLSLDHRFPF  322 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~-g-------V~vv~~alD~s~~~l~~a~eR----Gl-----i~~~~~~~e~LPf  322 (418)
                      +.++...++|||+||||..|..+.+. +       -.|  +.+|+++.|+.++++|    ++     +.++.+++|.|||
T Consensus        96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V--~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF  173 (296)
T KOG1540|consen   96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKV--TVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF  173 (296)
T ss_pred             cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceE--EEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC
Confidence            45566689999999999999888765 1       222  2479999999876554    44     2334579999999


Q ss_pred             CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          323 YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       323 ~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ++++||+...+..+.++.+++   ++|.|++|||||||+|.+.+|
T Consensus       174 dd~s~D~yTiafGIRN~th~~---k~l~EAYRVLKpGGrf~cLeF  215 (296)
T KOG1540|consen  174 DDDSFDAYTIAFGIRNVTHIQ---KALREAYRVLKPGGRFSCLEF  215 (296)
T ss_pred             CCCcceeEEEecceecCCCHH---HHHHHHHHhcCCCcEEEEEEc
Confidence            999999999999999998877   999999999999999988776

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.55  E-value=2.4e-14  Score=137.62  Aligned_cols=100  Identities=18%  Similarity=0.260  Sum_probs=85.1

Q ss_pred             CCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccceEEecCcCcCCCCh
Q 037675          264 GIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQP  342 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~  342 (418)
                      ...+|||+|||+|.++..|++++..++  ++|+++.|++.++++.. ..+..++.+.+|+++++||+|+++.++++..+.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~--~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~  119 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGSQVT--ALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL  119 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCCeEE--EEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH
Confidence            346899999999999999998886664  57999999999988753 245667889999999999999999999877654


Q ss_pred             hHHHHHHHHhhccccCCcEEEEEecc
Q 037675          343 EKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       343 ~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      .   .++.|+.|+|||||+++++.+.
T Consensus       120 ~---~~l~~~~~~Lk~gG~l~~~~~~  142 (251)
T PRK10258        120 S---TALRELYRVVRPGGVVAFTTLV  142 (251)
T ss_pred             H---HHHHHHHHHcCCCeEEEEEeCC
Confidence            4   8999999999999999998753

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.55  E-value=2.9e-14  Score=143.46  Aligned_cols=121  Identities=13%  Similarity=0.130  Sum_probs=98.1

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC-------CCceeecccCCCCCCCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG-------LFPLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG-------li~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      .+|||||||+|.++..|++.|..++  ++|.++.|++.|+++.       -+.+..++++.+|+++++||+|+|..+++|
T Consensus       133 ~~ILDIGCG~G~~s~~La~~g~~V~--GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH  210 (322)
T PLN02396        133 LKFIDIGCGGGLLSEPLARMGATVT--GVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH  210 (322)
T ss_pred             CEEEEeeCCCCHHHHHHHHcCCEEE--EEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence            4899999999999999998887664  5899999999887641       134556788899998999999999999999


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEecccC--------------------ch------hHHHHHHHHHHHcCcEEEE
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA--------------------ND------EKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~--------------------~e------e~~~~~~~l~~~~Gfk~l~  391 (418)
                      ..++.   .+|.++.|+|||||.++++.....                    +.      -..+++..++++.||+.+.
T Consensus       211 v~d~~---~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~  286 (322)
T PLN02396        211 VANPA---EFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKE  286 (322)
T ss_pred             cCCHH---HHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEE
Confidence            98765   899999999999999998864211                    00      0136789999999998764

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.54  E-value=4.8e-14  Score=136.44  Aligned_cols=124  Identities=19%  Similarity=0.251  Sum_probs=95.7

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCC-CCCCccceEEecCcC
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFP-FYDNVFDLVHASSGL  336 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LP-f~d~sFDlV~s~~~L  336 (418)
                      ..+|||+|||+|.++..|++++..++  ++|+++.|++.|+++    |+   +.++.++.+.++ +++++||+|++..++
T Consensus        45 ~~~vLDiGcG~G~~a~~la~~g~~v~--~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl  122 (255)
T PRK11036         45 PLRVLDAGGGEGQTAIKLAELGHQVI--LCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL  122 (255)
T ss_pred             CCEEEEeCCCchHHHHHHHHcCCEEE--EEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence            35899999999999999999987764  579999999887664    33   234556666663 678999999999999


Q ss_pred             cCCCChhHHHHHHHHhhccccCCcEEEEEecccCc------------------------------hhHHHHHHHHHHHcC
Q 037675          337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN------------------------------DEKKSALTRLIERFG  386 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~------------------------------ee~~~~~~~l~~~~G  386 (418)
                      ++..++.   .++.++.|+|||||++++..+....                              ....+.+..+++..|
T Consensus       123 ~~~~~~~---~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aG  199 (255)
T PRK11036        123 EWVADPK---SVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAG  199 (255)
T ss_pred             HhhCCHH---HHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCC
Confidence            9987665   8999999999999999775432110                              011356888999999


Q ss_pred             cEEEEEE
Q 037675          387 YKKLKWV  393 (418)
Q Consensus       387 fk~l~W~  393 (418)
                      |+.+.+.
T Consensus       200 f~~~~~~  206 (255)
T PRK11036        200 WQIMGKT  206 (255)
T ss_pred             CeEeeee
Confidence            9987544

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.53  E-value=1.5e-13  Score=130.10  Aligned_cols=104  Identities=22%  Similarity=0.296  Sum_probs=82.3

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCcc
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVF  327 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sF  327 (418)
                      .+.+.++  .+|||+|||+|.++..+++. +  ..++  ++|+++.|++.++++    ++  +.++.++.+.+|+++++|
T Consensus        40 ~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  115 (231)
T TIGR02752        40 RMNVQAG--TSALDVCCGTADWSIALAEAVGPEGHVI--GLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSF  115 (231)
T ss_pred             hcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCc
Confidence            3345555  48999999999999999875 3  3443  579999999877653    22  244557888889999999


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      |+|++..++++..+..   .++.|+.|+|||||++++.++
T Consensus       116 D~V~~~~~l~~~~~~~---~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       116 DYVTIGFGLRNVPDYM---QVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             cEEEEecccccCCCHH---HHHHHHHHHcCcCeEEEEEEC
Confidence            9999999998876654   899999999999999987664

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.52  E-value=1.1e-13  Score=139.06  Aligned_cols=124  Identities=21%  Similarity=0.252  Sum_probs=94.4

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHH--Hc--C---CCceeecccCCCCCCCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIA--AR--G---LFPLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~--eR--G---li~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      ++|||||||+|.++.+|++.|...| +++|+++.|+..+.  .+  +   -+.+...+.+.+|+ +++||+|+|..+++|
T Consensus       124 ~~VLDIGCG~G~~~~~la~~g~~~V-~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H  201 (322)
T PRK15068        124 RTVLDVGCGNGYHMWRMLGAGAKLV-VGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH  201 (322)
T ss_pred             CEEEEeccCCcHHHHHHHHcCCCEE-EEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence            5899999999999999999874322 45899998875422  21  1   13445568889998 889999999999999


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEecccCc--------hh------------HHHHHHHHHHHcCcEEEEEEE
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN--------DE------------KKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--------ee------------~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      ..++.   .+|.++.|+|||||.+++++....+        .+            ..+.+..+++++||+.++..-
T Consensus       202 ~~dp~---~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~  274 (322)
T PRK15068        202 RRSPL---DHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD  274 (322)
T ss_pred             cCCHH---HHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence            87665   8999999999999999887642111        00            124688999999999987654

>TIGR00452 methyltransferase, putative

Probab=99.51  E-value=1.7e-13  Score=137.50  Aligned_cols=127  Identities=19%  Similarity=0.164  Sum_probs=93.4

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHH--Hc-----CCCceeecccCCCCCCCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIA--AR-----GLFPLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~--eR-----Gli~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      ++|||+|||+|.++..++..|...+ +++|+++.|+..+.  ++     ..+.+...+.+.+|.. .+||+|+|+.+++|
T Consensus       123 ~~VLDvGCG~G~~~~~~~~~g~~~v-~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H  200 (314)
T TIGR00452       123 RTILDVGCGSGYHMWRMLGHGAKSL-VGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYH  200 (314)
T ss_pred             CEEEEeccCCcHHHHHHHHcCCCEE-EEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhc
Confidence            5899999999999999998875422 46899998875432  11     1123334567778764 48999999999999


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEecccCc---------hh-----------HHHHHHHHHHHcCcEEEEEEEccc
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN---------DE-----------KKSALTRLIERFGYKKLKWVVGEK  397 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~---------ee-----------~~~~~~~l~~~~Gfk~l~W~~~~k  397 (418)
                      +.++.   .+|.|++|+|||||.+++.+....+         ..           ..+.+..+++++||+.++......
T Consensus       201 ~~dp~---~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~  276 (314)
T TIGR00452       201 RKSPL---EHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLK  276 (314)
T ss_pred             cCCHH---HHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEeccC
Confidence            87665   8999999999999999987542111         00           124678889999999998665443

Known examples to date are restricted to the proteobacteria.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.51  E-value=2.7e-13  Score=126.79  Aligned_cols=132  Identities=16%  Similarity=0.206  Sum_probs=91.7

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCCCCCCc
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFPFYDNV  326 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LPf~d~s  326 (418)
                      .+.+.+...++  .+|||+|||+|.++.+|+++|..++  ++|+|+.|++.+++    +++  +.....+...+++ +++
T Consensus        21 ~l~~~l~~~~~--~~vLDiGcG~G~~a~~La~~g~~V~--gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~   95 (197)
T PRK11207         21 EVLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGFDVT--AWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGE   95 (197)
T ss_pred             HHHHhcccCCC--CcEEEECCCCCHHHHHHHHCCCEEE--EEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCC
Confidence            33444444433  4899999999999999999987664  57999999986654    344  2334456666666 467


Q ss_pred             cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-------h---hHHHHHHHHHHHcCcEEEEE
Q 037675          327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-------D---EKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-------e---e~~~~~~~l~~~~Gfk~l~W  392 (418)
                      ||+|++..++|+.. +.....++.++.|+|||||++++...+...       .   -..+++..+++  ||+.+.-
T Consensus        96 fD~I~~~~~~~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~  168 (197)
T PRK11207         96 YDFILSTVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKY  168 (197)
T ss_pred             cCEEEEecchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEe
Confidence            99999999998764 445679999999999999997554332211       0   01234566665  7877654

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.51  E-value=2.7e-13  Score=137.36  Aligned_cols=146  Identities=16%  Similarity=0.129  Sum_probs=107.7

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcC---CCceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARG---LFPLYLSLDHRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRG---li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      .+|||+|||+|.++..+++.  +..++  ++|.++.|++.++++.   -+.+..++.+.+|+++++||+|++..+++++.
T Consensus       115 ~~VLDLGcGtG~~~l~La~~~~~~~Vt--gVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~  192 (340)
T PLN02490        115 LKVVDVGGGTGFTTLGIVKHVDAKNVT--ILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP  192 (340)
T ss_pred             CEEEEEecCCcHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence            58999999999999888765  33443  4799999999887752   23566788889999999999999999999987


Q ss_pred             ChhHHHHHHHHhhccccCCcEEEEEecccC----ch---------hHHHHHHHHHHHcCcEEEEEEEcccCC-C---Ccc
Q 037675          341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCA----ND---------EKKSALTRLIERFGYKKLKWVVGEKGE-T---GKS  403 (418)
Q Consensus       341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~----~e---------e~~~~~~~l~~~~Gfk~l~W~~~~k~d-~---~~~  403 (418)
                      ++.   .++.|+.|+|||||.+++.++...    ..         ...+++.+++++.||+.+.+....... .   ..+
T Consensus       193 d~~---~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~  269 (340)
T PLN02490        193 DPQ---RGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHG  269 (340)
T ss_pred             CHH---HHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhcccccccc
Confidence            765   799999999999999987653211    00         123678899999999999876533221 1   112


Q ss_pred             -ceEEEEEEEcCCC
Q 037675          404 -EVYLSAVLQKPVR  416 (418)
Q Consensus       404 -e~~l~Ai~qKP~~  416 (418)
                       .+-.+...+||.+
T Consensus       270 ~~~~~~v~~~k~~~  283 (340)
T PLN02490        270 LIMGCSVTGVKPAS  283 (340)
T ss_pred             ceeeEEEEEecccc
Confidence             2225556778764

>PRK05785 hypothetical protein; Provisional

Probab=99.49  E-value=2.1e-13  Score=130.47  Aligned_cols=88  Identities=19%  Similarity=0.291  Sum_probs=76.7

Q ss_pred             CeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhH
Q 037675          266 RIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEK  344 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~  344 (418)
                      .+|||+|||||.++..|+++ +..++  ++|++++|++.++++.  ...+++++.+||++++||+|+++.+++++.+++ 
T Consensus        53 ~~VLDlGcGtG~~~~~l~~~~~~~v~--gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~-  127 (226)
T PRK05785         53 KKVLDVAAGKGELSYHFKKVFKYYVV--ALDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHASDNIE-  127 (226)
T ss_pred             CeEEEEcCCCCHHHHHHHHhcCCEEE--EECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhccCCHH-
Confidence            58999999999999999988 55554  5899999999998874  456788999999999999999999999886654 


Q ss_pred             HHHHHHHhhccccCCc
Q 037675          345 LEFLMFDFDRILRAGG  360 (418)
Q Consensus       345 le~~L~Ei~RVLRPGG  360 (418)
                        .++.|+.|||||.+
T Consensus       128 --~~l~e~~RvLkp~~  141 (226)
T PRK05785        128 --KVIAEFTRVSRKQV  141 (226)
T ss_pred             --HHHHHHHHHhcCce
Confidence              89999999999953

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.49  E-value=6.5e-13  Score=124.56  Aligned_cols=174  Identities=17%  Similarity=0.179  Sum_probs=111.4

Q ss_pred             cccccccccCCcHH-HHHHHH--ccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC--C--Cc
Q 037675          239 ENQRYIKARGKNDF-LIDDVL--ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG--L--FP  311 (418)
Q Consensus       239 e~~~W~~~~~~y~~-~I~~lL--~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG--l--i~  311 (418)
                      ..+-|.+....|+. .-.+++  .|+.+.++++||+|||.|.|+..|+.+--.+  .++|+++..++.|++|-  .  +.
T Consensus        15 ~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~L--lavDis~~Al~~Ar~Rl~~~~~V~   92 (201)
T PF05401_consen   15 NDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRL--LAVDISPRALARARERLAGLPHVE   92 (201)
T ss_dssp             SSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEE--EEEES-HHHHHHHHHHTTT-SSEE
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCce--EEEeCCHHHHHHHHHhcCCCCCeE
Confidence            44566666555665 233333  4778888999999999999999999984222  24699999999999873  2  23


Q ss_pred             eeecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc------cCchhHHHHHHHHHHHc
Q 037675          312 LYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY------CANDEKKSALTRLIERF  385 (418)
Q Consensus       312 ~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~------~~~ee~~~~~~~l~~~~  385 (418)
                      +.+.+.... .|++.||+|+++.+++++.+.+++..++..+...|+|||.+++.+..      |....-.+.+.+++.+.
T Consensus        93 ~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~  171 (201)
T PF05401_consen   93 WIQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH  171 (201)
T ss_dssp             EEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH
T ss_pred             EEECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH
Confidence            344444332 57899999999999999988788899999999999999999998752      11111123455666554


Q ss_pred             CcEEEEEEEcccCCCCccceEEEEEEEcCCCCC
Q 037675          386 GYKKLKWVVGEKGETGKSEVYLSAVLQKPVRVS  418 (418)
Q Consensus       386 Gfk~l~W~~~~k~d~~~~e~~l~Ai~qKP~~~s  418 (418)
                       +..+.-..-...  ..+|-.+.+-++||++.|
T Consensus       172 -~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  201 (201)
T PF05401_consen  172 -LTEVERVECRGG--SPNEDCLLARFRNPVSAS  201 (201)
T ss_dssp             -SEEEEEEEEE-S--STTSEEEEEEEE--SSS-
T ss_pred             -hhheeEEEEcCC--CCCCceEeeeecCCcCCC
Confidence             555543221211  246778899999999876

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.49  E-value=3.3e-13  Score=131.42  Aligned_cols=129  Identities=18%  Similarity=0.271  Sum_probs=97.0

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc-Cc--EEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccce
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER-NV--TVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFDL  329 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~-gV--~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFDl  329 (418)
                      .+.+|  .+|||+|||+|..+..+++. +.  .+  +++|+++.|++.|+++    |+  +.+..++.+.+|+++++||+
T Consensus        74 ~~~~g--~~VLDiG~G~G~~~~~~a~~~g~~~~v--~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~  149 (272)
T PRK11873         74 ELKPG--ETVLDLGSGGGFDCFLAARRVGPTGKV--IGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDV  149 (272)
T ss_pred             cCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEE--EEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeE
Confidence            35555  49999999999887766654 32  34  3579999999988764    33  23445788889999999999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch-------------------hHHHHHHHHHHHcCcEEE
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND-------------------EKKSALTRLIERFGYKKL  390 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e-------------------e~~~~~~~l~~~~Gfk~l  390 (418)
                      |++..+++++.+..   .++.|+.|+|||||++++.+.....+                   ...+++..+++..||..+
T Consensus       150 Vi~~~v~~~~~d~~---~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v  226 (272)
T PRK11873        150 IISNCVINLSPDKE---RVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDI  226 (272)
T ss_pred             EEEcCcccCCCCHH---HHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCce
Confidence            99999998876554   89999999999999999977532210                   123468889999999987


Q ss_pred             EEEE
Q 037675          391 KWVV  394 (418)
Q Consensus       391 ~W~~  394 (418)
                      ....
T Consensus       227 ~i~~  230 (272)
T PRK11873        227 TIQP  230 (272)
T ss_pred             EEEe
Confidence            6533

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.48  E-value=3.3e-13  Score=141.46  Aligned_cols=122  Identities=20%  Similarity=0.296  Sum_probs=97.6

Q ss_pred             CeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc--CC---CceeecccCCCCCCCCccceEEecCcCcCC
Q 037675          266 RIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR--GL---FPLYLSLDHRFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR--Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      .+|||||||+|..+..|++. +..++  ++|+|+.+++.|+++  +.   +.+..++...+|+++++||+|+|..+++|+
T Consensus       268 ~~vLDiGcG~G~~~~~la~~~~~~v~--gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~  345 (475)
T PLN02336        268 QKVLDVGCGIGGGDFYMAENFDVHVV--GIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHI  345 (475)
T ss_pred             CEEEEEeccCCHHHHHHHHhcCCEEE--EEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccccc
Confidence            58999999999999999876 66654  589999999988764  22   234557788889999999999999999999


Q ss_pred             CChhHHHHHHHHhhccccCCcEEEEEecccCc----hh-------------HHHHHHHHHHHcCcEEEEE
Q 037675          340 GQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN----DE-------------KKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       340 ~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~----ee-------------~~~~~~~l~~~~Gfk~l~W  392 (418)
                      .++.   .++.|+.|+|||||++++.++....    ++             ..+.+..++++.||+.+.+
T Consensus       346 ~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~  412 (475)
T PLN02336        346 QDKP---ALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIA  412 (475)
T ss_pred             CCHH---HHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeee
Confidence            7765   8999999999999999998763221    10             1245888999999998854

>PRK08317 hypothetical protein; Provisional

Probab=99.43  E-value=2.2e-12  Score=120.56  Aligned_cols=129  Identities=23%  Similarity=0.312  Sum_probs=96.8

Q ss_pred             HHHccCCCCCCeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHc--CC---CceeecccCCCCCCCCcc
Q 037675          256 DVLALGSGGIRIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAAR--GL---FPLYLSLDHRFPFYDNVF  327 (418)
Q Consensus       256 ~lL~l~~g~~r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eR--Gl---i~~~~~~~e~LPf~d~sF  327 (418)
                      +.+.+.++  .+|||+|||+|.++..++++.   ..+  +++|+++.+++.++++  +.   +.+..++.+.+|+++++|
T Consensus        13 ~~~~~~~~--~~vLdiG~G~G~~~~~~a~~~~~~~~v--~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~   88 (241)
T PRK08317         13 ELLAVQPG--DRVLDVGCGPGNDARELARRVGPEGRV--VGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF   88 (241)
T ss_pred             HHcCCCCC--CEEEEeCCCCCHHHHHHHHhcCCCcEE--EEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence            33445544  589999999999999998762   344  3579999999988776  11   234456778888999999


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC-----c--h-----------------hHHHHHHHHHH
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA-----N--D-----------------EKKSALTRLIE  383 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-----~--e-----------------e~~~~~~~l~~  383 (418)
                      |+|++..+++++.++.   .++.++.++|||||++++.++.+.     .  .                 .....+..+++
T Consensus        89 D~v~~~~~~~~~~~~~---~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  165 (241)
T PRK08317         89 DAVRSDRVLQHLEDPA---RALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFR  165 (241)
T ss_pred             eEEEEechhhccCCHH---HHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            9999999999987665   899999999999999988764211     0  0                 01134778899


Q ss_pred             HcCcEEEE
Q 037675          384 RFGYKKLK  391 (418)
Q Consensus       384 ~~Gfk~l~  391 (418)
                      ..||..+.
T Consensus       166 ~aGf~~~~  173 (241)
T PRK08317        166 EAGLTDIE  173 (241)
T ss_pred             HcCCCcee
Confidence            99998764

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.42  E-value=7.8e-13  Score=110.67  Aligned_cols=98  Identities=19%  Similarity=0.293  Sum_probs=75.4

Q ss_pred             CeEEEECCccChHHHHHhh--cCcEEEEeccCCCHHhHHHHHHcC----C---Cceeeccc-CCCCCCCCccceEEecC-
Q 037675          266 RIGFDIGGGSGTFAARMAE--RNVTVITNTLNVDAPYSEFIAARG----L---FPLYLSLD-HRFPFYDNVFDLVHASS-  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~--~gV~vv~~alD~s~~~l~~a~eRG----l---i~~~~~~~-e~LPf~d~sFDlV~s~~-  334 (418)
                      .+|||+|||+|.++.++++  .+..++  ++|+++.+++.++++-    .   +.+++++. .... ....||+|++.. 
T Consensus         3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~   79 (112)
T PF12847_consen    3 GRVLDLGCGTGRLSIALARLFPGARVV--GVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-FLEPFDLVICSGF   79 (112)
T ss_dssp             CEEEEETTTTSHHHHHHHHHHTTSEEE--EEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-TSSCEEEEEECSG
T ss_pred             CEEEEEcCcCCHHHHHHHhcCCCCEEE--EEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-cCCCCCEEEECCC
Confidence            4899999999999999999  577765  5899999998876653    2   34455666 3333 344599999998 


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +++++.+.+..+.++.++.+.|||||+++|..
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            66655444566789999999999999998874

...

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.41  E-value=6.7e-12  Score=118.53  Aligned_cols=98  Identities=18%  Similarity=0.177  Sum_probs=80.3

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccceEEecCcCcCCCCh
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQP  342 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~  342 (418)
                      .+|||+|||+|.++..|++.  +..+.  ++|+++.|++.|+++.. +.+..+++.. |+++++||+|++..+++|+. +
T Consensus        45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~--giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~-p  120 (204)
T TIGR03587        45 ASILELGANIGMNLAALKRLLPFKHIY--GVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN-P  120 (204)
T ss_pred             CcEEEEecCCCHHHHHHHHhCCCCeEE--EEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC-H
Confidence            58999999999999999886  45553  58999999999988532 3556666666 89999999999999999985 5


Q ss_pred             hHHHHHHHHhhccccCCcEEEEEeccc
Q 037675          343 EKLEFLMFDFDRILRAGGLFWLDNFYC  369 (418)
Q Consensus       343 ~~le~~L~Ei~RVLRPGG~~ii~~~~~  369 (418)
                      +.+..++.|+.|++  +++++|.+.+.
T Consensus       121 ~~~~~~l~el~r~~--~~~v~i~e~~~  145 (204)
T TIGR03587       121 DNLPTAYRELYRCS--NRYILIAEYYN  145 (204)
T ss_pred             HHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence            67889999999998  57888877643

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.40  E-value=1.3e-12  Score=122.44  Aligned_cols=124  Identities=19%  Similarity=0.263  Sum_probs=93.3

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC--CceeecccCCCCCCCCccceEEecCcCcCCCChh
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL--FPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPE  343 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl--i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~  343 (418)
                      .+|||+|||+|.++..|++.+..+-..++|+++.+++.+.++..  +.++.++.+.+|+++++||+|++..++++..++.
T Consensus        36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~  115 (240)
T TIGR02072        36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLS  115 (240)
T ss_pred             CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHH
Confidence            58999999999999999987522211357999999988887642  3556678888999999999999999999886554


Q ss_pred             HHHHHHHHhhccccCCcEEEEEecccCch-h-------------HHHHHHHHHHHcCcEEEEEE
Q 037675          344 KLEFLMFDFDRILRAGGLFWLDNFYCAND-E-------------KKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       344 ~le~~L~Ei~RVLRPGG~~ii~~~~~~~e-e-------------~~~~~~~l~~~~Gfk~l~W~  393 (418)
                         .++.++.|+|||||.+++..+..... +             ..+.+..+++.. |+.+.+.
T Consensus       116 ---~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~  175 (240)
T TIGR02072       116 ---QALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLE  175 (240)
T ss_pred             ---HHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence               89999999999999999887633221 0             113466667666 7655543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.40  E-value=1.7e-12  Score=125.21  Aligned_cols=95  Identities=17%  Similarity=0.177  Sum_probs=77.2

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccceEEecCcCcCCCCh
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQP  342 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~  342 (418)
                      .+|||+|||+|.++..|+++  +..++  ++|+++.|++.++++.- +.+..++.+.++ ++++||+|+++.++++..+.
T Consensus        33 ~~vLDiGcG~G~~~~~la~~~~~~~v~--gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~  109 (258)
T PRK01683         33 RYVVDLGCGPGNSTELLVERWPAARIT--GIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLPDH  109 (258)
T ss_pred             CEEEEEcccCCHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCCCH
Confidence            58999999999999999986  34443  57999999999987632 345556666664 56799999999999988655


Q ss_pred             hHHHHHHHHhhccccCCcEEEEEe
Q 037675          343 EKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       343 ~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      .   .++.++.|+|||||.+++..
T Consensus       110 ~---~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683        110 L---ELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             H---HHHHHHHHhcCCCcEEEEEC
Confidence            4   89999999999999998864

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.39  E-value=3.1e-12  Score=123.58  Aligned_cols=98  Identities=13%  Similarity=0.109  Sum_probs=78.2

Q ss_pred             CeEEEECCccChHHHHHhhc----CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAER----NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~----gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      .+|||+|||+|..+..|++.    +..++  ++|+++.|++.++++    +.   +.++.++...+|++  .+|+|+++.
T Consensus        58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~--gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~  133 (247)
T PRK15451         58 TQVYDLGCSLGAATLSVRRNIHHDNCKII--AIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF  133 (247)
T ss_pred             CEEEEEcccCCHHHHHHHHhcCCCCCeEE--EEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence            48999999999999888762    45554  589999999988765    22   34556777788765  499999999


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      ++|+..+ .....++.++.|+|||||.|++.+.+
T Consensus       134 ~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        134 TLQFLEP-SERQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             HHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            9998764 34568999999999999999998753

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.38  E-value=2.8e-12  Score=120.84  Aligned_cols=122  Identities=21%  Similarity=0.303  Sum_probs=92.6

Q ss_pred             eEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCcCc
Q 037675          267 IGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      +|||||||+|.++..+++.  +..++  ++|+++.+++.+.++    |+   +.+...+..+.|++ ++||+|++..+++
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~--gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~   78 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLH--GYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH   78 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence            7999999999999999876  35554  479999999877663    33   24445566555664 5899999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccCc------h------hHHHHHHHHHHHcCcEEEEEEE
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN------D------EKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~------e------e~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      +..+.   +.++.++.|+|||||++++.++....      +      .....|..++++.||+.++...
T Consensus        79 ~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~  144 (224)
T smart00828       79 HIKDK---MDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVD  144 (224)
T ss_pred             hCCCH---HHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence            88664   48999999999999999988763210      0      0135688899999999887543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.38  E-value=2.7e-11  Score=113.84  Aligned_cols=97  Identities=22%  Similarity=0.271  Sum_probs=78.1

Q ss_pred             CeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHcC-------CCceeecccCCCCCCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAARG-------LFPLYLSLDHRFPFYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eRG-------li~~~~~~~e~LPf~d~sFDlV~s~~~  335 (418)
                      .+|||+|||+|.++..+++.+   ..++  ++|+++.+++.+.++-       .+.+..++...+++.+++||+|+++.+
T Consensus        53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~--~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~  130 (239)
T PRK00216         53 DKVLDLACGTGDLAIALAKAVGKTGEVV--GLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG  130 (239)
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCCeEE--EEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence            589999999999999998764   4443  5799999998776641       124445677778888899999999999


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +++..+..   .++.++.++|+|||++++.+.
T Consensus       131 l~~~~~~~---~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        131 LRNVPDID---KALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             cccCCCHH---HHHHHHHHhccCCcEEEEEEe
Confidence            99886654   889999999999999987654

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.38  E-value=6.9e-13  Score=110.32  Aligned_cols=90  Identities=32%  Similarity=0.463  Sum_probs=71.7

Q ss_pred             EEEECCccChHHHHHhhc---C--cEEEEeccCCCHHhHHHHHHcC----C-CceeecccCCCCCCCCccceEEecCc-C
Q 037675          268 GFDIGGGSGTFAARMAER---N--VTVITNTLNVDAPYSEFIAARG----L-FPLYLSLDHRFPFYDNVFDLVHASSG-L  336 (418)
Q Consensus       268 VLDvGCGtG~faa~La~~---g--V~vv~~alD~s~~~l~~a~eRG----l-i~~~~~~~e~LPf~d~sFDlV~s~~~-L  336 (418)
                      |||+|||+|..+..+++.   +  ..++  ++|+++.|++.++++.    . +.+++++++++|+.+++||+|+++.. +
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~--gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~   78 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVI--GVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSL   78 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEE--EEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEE--EEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence            799999999999999876   3  5553  5899999999888765    3 35566888999999999999999654 8


Q ss_pred             cCCCChhHHHHHHHHhhccccCCc
Q 037675          337 DVGGQPEKLEFLMFDFDRILRAGG  360 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~RVLRPGG  360 (418)
                      ++. ++..++.++.++.++|||||
T Consensus        79 ~~~-~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   79 HHL-SPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGS-SHHHHHHHHHHHHHTEEEEE
T ss_pred             CCC-CHHHHHHHHHHHHHHhCCCC
Confidence            885 45678899999999999998

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.37  E-value=5.5e-12  Score=124.48  Aligned_cols=143  Identities=14%  Similarity=0.173  Sum_probs=96.0

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC-CceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      .+|||+|||+|.++.+|+++|..++  ++|.++.+++.+++    .++ +.+...+....++ +++||+|++..++++..
T Consensus       122 ~~vLDlGcG~G~~~~~la~~g~~V~--avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~  198 (287)
T PRK12335        122 GKALDLGCGQGRNSLYLALLGFDVT--AVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLN  198 (287)
T ss_pred             CCEEEeCCCCCHHHHHHHHCCCEEE--EEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCC
Confidence            3899999999999999999987764  58999998876543    454 1223344545444 78899999999998864


Q ss_pred             ChhHHHHHHHHhhccccCCcEEEEEecccCc------h----hHHHHHHHHHHHcCcEEEEEEEcc----cCCC-Ccc--
Q 037675          341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCAN------D----EKKSALTRLIERFGYKKLKWVVGE----KGET-GKS--  403 (418)
Q Consensus       341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~------e----e~~~~~~~l~~~~Gfk~l~W~~~~----k~d~-~~~--  403 (418)
                       ++.+..++.++.|+|||||++++..+....      +    -...++.++++.  |+.+++.-..    +.|. +..  
T Consensus       199 -~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~e~~~~~~~~~~~g~~~~  275 (287)
T PRK12335        199 -RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYNENVGHLHKTDENGNRIK  275 (287)
T ss_pred             -HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEeccccchhhhccCCCeee
Confidence             456779999999999999997664332110      0    113456666654  7777764222    3331 111  


Q ss_pred             ceEEEEEEEcC
Q 037675          404 EVYLSAVLQKP  414 (418)
Q Consensus       404 e~~l~Ai~qKP  414 (418)
                      -.+.+.+.||+
T Consensus       276 ~~~~~~~a~k~  286 (287)
T PRK12335        276 LRFATLLAKKV  286 (287)
T ss_pred             eeeeeeccccC
Confidence            23456667776

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.35  E-value=6.7e-12  Score=117.26  Aligned_cols=122  Identities=11%  Similarity=0.121  Sum_probs=86.2

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC-CceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      .+|||+|||+|.++.+|+++|..|+  ++|+++.|++.+++    .|+ +.....+....++ +++||+|+++.++++..
T Consensus        32 ~~vLDiGcG~G~~a~~la~~g~~V~--~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~  108 (195)
T TIGR00477        32 CKTLDLGCGQGRNSLYLSLAGYDVR--AWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDFIFSTVVFMFLQ  108 (195)
T ss_pred             CcEEEeCCCCCHHHHHHHHCCCeEE--EEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCEEEEecccccCC
Confidence            4899999999999999999986664  57999999986543    354 1223344555555 46799999999998774


Q ss_pred             ChhHHHHHHHHhhccccCCcEEEEEecccCc----------hhHHHHHHHHHHHcCcEEEEEE
Q 037675          341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCAN----------DEKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~----------ee~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      . ...+.++.++.|+|||||++++.......          .-..+++..++.  +|+.+.|.
T Consensus       109 ~-~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~  168 (195)
T TIGR00477       109 A-GRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYN  168 (195)
T ss_pred             H-HHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEee
Confidence            3 45678999999999999996554332110          011344556555  48888776

Part of a tellurite-reducing operon tehA and tehB

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.35  E-value=8.4e-12  Score=123.03  Aligned_cols=129  Identities=24%  Similarity=0.288  Sum_probs=86.5

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHH----cCCC---ceeecccCCCCCCCCccce
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAA----RGLF---PLYLSLDHRFPFYDNVFDL  329 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~e----RGli---~~~~~~~e~LPf~d~sFDl  329 (418)
                      +.+++|.  +|||||||.|+++.+++++ |+.|++  +.+|++|.+.+++    +|+.   .+...+..+++.   +||.
T Consensus        58 ~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~g--itlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~  130 (273)
T PF02353_consen   58 LGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTG--ITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDR  130 (273)
T ss_dssp             TT--TT---EEEEES-TTSHHHHHHHHHH--EEEE--EES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SE
T ss_pred             hCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEE--EECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCE
Confidence            3577774  9999999999999999998 988764  7889999887654    4652   233344444443   9999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-----------hhH------------HHHHHHHHHHcC
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-----------DEK------------KSALTRLIERFG  386 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-----------ee~------------~~~~~~l~~~~G  386 (418)
                      |++..++.|... .+.+.++.++.|+|||||.+++.......           +-+            ..++...++..|
T Consensus       131 IvSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~  209 (273)
T PF02353_consen  131 IVSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAG  209 (273)
T ss_dssp             EEEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT
T ss_pred             EEEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCC
Confidence            999999999864 45679999999999999999876542211           001            144666788899


Q ss_pred             cEEEEEEE
Q 037675          387 YKKLKWVV  394 (418)
Q Consensus       387 fk~l~W~~  394 (418)
                      |+...|..
T Consensus       210 l~v~~~~~  217 (273)
T PF02353_consen  210 LEVEDVEN  217 (273)
T ss_dssp             -EEEEEEE
T ss_pred             EEEEEEEE
Confidence            99887765

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.34  E-value=3.4e-12  Score=113.73  Aligned_cols=98  Identities=19%  Similarity=0.368  Sum_probs=79.5

Q ss_pred             CeEEEECCccChHHHHHhh-c--CcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCC--CCCCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAE-R--NVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFP--FYDNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~-~--gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LP--f~d~sFDlV~s~~  334 (418)
                      .+|||+|||+|.++..|++ .  +..++  ++|+++.|++.|++    .++  +.+.+++.++++  ++ +.||+|++..
T Consensus         5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~--gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~   81 (152)
T PF13847_consen    5 KKILDLGCGTGRLLIQLAKELNPGAKII--GVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG   81 (152)
T ss_dssp             SEEEEET-TTSHHHHHHHHHSTTTSEEE--EEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred             CEEEEecCcCcHHHHHHHHhcCCCCEEE--EEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence            4899999999999999994 3  45654  48999999998876    344  355567777777  66 8999999999


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC  369 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~  369 (418)
                      ++++..++.   .++.++.|+|||||.+++.++..
T Consensus        82 ~l~~~~~~~---~~l~~~~~~lk~~G~~i~~~~~~  113 (152)
T PF13847_consen   82 VLHHFPDPE---KVLKNIIRLLKPGGILIISDPNH  113 (152)
T ss_dssp             TGGGTSHHH---HHHHHHHHHEEEEEEEEEEEEEH
T ss_pred             chhhccCHH---HHHHHHHHHcCCCcEEEEEECCh
Confidence            998886554   89999999999999999988763

...

>TIGR00740 methyltransferase, putative

Probab=99.34  E-value=1.5e-11  Score=117.64  Aligned_cols=99  Identities=15%  Similarity=0.121  Sum_probs=78.8

Q ss_pred             CeEEEECCccChHHHHHhhc----CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAER----NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~----gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      .+|||+|||+|.++..++++    +..++  ++|+++.|++.|+++    +.   +.+..++...+|++  .+|+|++..
T Consensus        55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~--gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~  130 (239)
T TIGR00740        55 SNVYDLGCSRGAATLSARRNINQPNVKII--GIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF  130 (239)
T ss_pred             CEEEEecCCCCHHHHHHHHhcCCCCCeEE--EEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence            58999999999999988874    44554  579999999988764    21   24556788888875  489999999


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC  369 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~  369 (418)
                      ++|+..+ .+...++.++.|+|||||.+++.+.+.
T Consensus       131 ~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~~~  164 (239)
T TIGR00740       131 TLQFLPP-EDRIALLTKIYEGLNPNGVLVLSEKFR  164 (239)
T ss_pred             chhhCCH-HHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence            9998754 345689999999999999999987643

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK04266 fibrillarin; Provisional

Probab=99.33  E-value=4.7e-11  Score=114.70  Aligned_cols=128  Identities=17%  Similarity=0.182  Sum_probs=84.0

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc-C-cEEEEeccCCCHHhHHHH----HHcCCCceeecccCC----CCCCCCcc
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER-N-VTVITNTLNVDAPYSEFI----AARGLFPLYLSLDHR----FPFYDNVF  327 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~-g-V~vv~~alD~s~~~l~~a----~eRGli~~~~~~~e~----LPf~d~sF  327 (418)
                      +++.+|  .+|||+|||+|.++..|++. + -.+  .++|.++.|++.+    +++.-+..+.++...    .++ +++|
T Consensus        68 l~i~~g--~~VlD~G~G~G~~~~~la~~v~~g~V--~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~  142 (226)
T PRK04266         68 FPIKKG--SKVLYLGAASGTTVSHVSDIVEEGVV--YAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKV  142 (226)
T ss_pred             CCCCCC--CEEEEEccCCCHHHHHHHHhcCCCeE--EEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccC
Confidence            456666  48999999999999999886 2 233  3579999888743    333223444555433    122 3569


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE------ecccCchhHHHHHHHHHHHcCcEEEEEEEc
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD------NFYCANDEKKSALTRLIERFGYKKLKWVVG  395 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~------~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~  395 (418)
                      |+|++...     ++.....++.++.|+|||||+++|.      ++........+.....++.+||+.+.+...
T Consensus       143 D~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l  211 (226)
T PRK04266        143 DVIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL  211 (226)
T ss_pred             CEEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence            99986422     2222336789999999999999984      322222222233458889999999987553

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.33  E-value=2.2e-12  Score=124.08  Aligned_cols=97  Identities=18%  Similarity=0.294  Sum_probs=81.1

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCC-ceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLF-PLYLSLDHRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli-~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      .+|||||||.|.++..|+..|..|.  ++|+++.+++.|+.+    |+. .......+++-...++||+|.|+.+++|..
T Consensus        61 ~~vLDvGCGgG~Lse~mAr~Ga~Vt--giD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~  138 (243)
T COG2227          61 LRVLDVGCGGGILSEPLARLGASVT--GIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP  138 (243)
T ss_pred             CeEEEecCCccHhhHHHHHCCCeeE--EecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence            4899999999999999999997774  589999999988744    331 122345666666568999999999999998


Q ss_pred             ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          341 QPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +++   .++.+..+.+||||.++++..
T Consensus       139 dp~---~~~~~c~~lvkP~G~lf~STi  162 (243)
T COG2227         139 DPE---SFLRACAKLVKPGGILFLSTI  162 (243)
T ss_pred             CHH---HHHHHHHHHcCCCcEEEEecc
Confidence            887   799999999999999999986

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.32  E-value=2.3e-11  Score=113.14  Aligned_cols=97  Identities=22%  Similarity=0.334  Sum_probs=79.3

Q ss_pred             CeEEEECCccChHHHHHhhcCc---EEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNV---TVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV---~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      .+|||+|||+|.++..+++...   .+  +++|+++.+++.+.++.    .+.+..++...+++++++||+|++...+++
T Consensus        41 ~~vldiG~G~G~~~~~~~~~~~~~~~~--~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~  118 (223)
T TIGR01934        41 QKVLDVACGTGDLAIELAKSAPDRGKV--TGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN  118 (223)
T ss_pred             CeEEEeCCCCChhHHHHHHhcCCCceE--EEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence            5899999999999999987742   44  35899999998887753    134556777788888889999999999988


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ..+..   .++.++.++|||||++++.+.
T Consensus       119 ~~~~~---~~l~~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934       119 VTDIQ---KALREMYRVLKPGGRLVILEF  144 (223)
T ss_pred             cccHH---HHHHHHHHHcCCCcEEEEEEe
Confidence            76544   899999999999999988664

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.30  E-value=1.2e-11  Score=120.96  Aligned_cols=91  Identities=21%  Similarity=0.356  Sum_probs=72.6

Q ss_pred             CCeEEEECCccChHHHHHhhcC-----cEEEEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccceEEecCcCcC
Q 037675          265 IRIGFDIGGGSGTFAARMAERN-----VTVITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~g-----V~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      ..+|||+|||+|.++..|++..     ..+  +++|+|+.|++.|.++.. +.+..++...+||++++||+|++...   
T Consensus        86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v--~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---  160 (272)
T PRK11088         86 ATALLDIGCGEGYYTHALADALPEITTMQL--FGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---  160 (272)
T ss_pred             CCeEEEECCcCCHHHHHHHHhcccccCCeE--EEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC---
Confidence            3579999999999999988652     233  458999999999987742 34566788899999999999998543   


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                         +    ..+.|+.|+|||||+|++..+
T Consensus       161 ---~----~~~~e~~rvLkpgG~li~~~p  182 (272)
T PRK11088        161 ---P----CKAEELARVVKPGGIVITVTP  182 (272)
T ss_pred             ---C----CCHHHHHhhccCCCEEEEEeC
Confidence               1    235699999999999988765

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.29  E-value=2.3e-11  Score=127.63  Aligned_cols=125  Identities=14%  Similarity=0.161  Sum_probs=95.2

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC-C---Cceeeccc--CCCCCCCCccceEEecCcCcCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG-L---FPLYLSLD--HRFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG-l---i~~~~~~~--e~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      .+|||+|||+|.++..|++++..++  ++|+++.|++.+.+.. .   +.++.++.  +.+|+++++||+|++..+++++
T Consensus        39 ~~vLDlGcG~G~~~~~la~~~~~v~--giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l  116 (475)
T PLN02336         39 KSVLELGAGIGRFTGELAKKAGQVI--ALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYL  116 (475)
T ss_pred             CEEEEeCCCcCHHHHHHHhhCCEEE--EEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhC
Confidence            4899999999999999998865554  5799999998776432 1   23444554  3578899999999999999988


Q ss_pred             CChhHHHHHHHHhhccccCCcEEEEEecccCc---------hh---HHHHHHHHHHHcCcEEEEEE
Q 037675          340 GQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN---------DE---KKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       340 ~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~---------ee---~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      .+. .+..++.++.|+|||||++++.+.....         +.   ....|..++.+.||......
T Consensus       117 ~~~-~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  181 (475)
T PLN02336        117 SDK-EVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGN  181 (475)
T ss_pred             CHH-HHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCC
Confidence            653 4678999999999999999887642211         01   13578899999998876533

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.28  E-value=2.8e-11  Score=115.04  Aligned_cols=135  Identities=22%  Similarity=0.307  Sum_probs=101.0

Q ss_pred             HHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCC-ceee-cccCCCCCCCCccceEEec
Q 037675          256 DVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLF-PLYL-SLDHRFPFYDNVFDLVHAS  333 (418)
Q Consensus       256 ~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli-~~~~-~~~e~LPf~d~sFDlV~s~  333 (418)
                      ++++++.+..+-|||||||+|-.+..|.+.|...+  ++|+|+.|++.|.++.+- .++. +--+.+||.+++||.|++.
T Consensus        42 ELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wi--GvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISI  119 (270)
T KOG1541|consen   42 ELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWI--GVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISI  119 (270)
T ss_pred             HHhhCCCCCCcEEEEeccCCCcchheeccCCceEE--eecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEe
Confidence            35667766667899999999999999999985443  589999999999987653 2333 4558999999999999998


Q ss_pred             CcCcCC--------CChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcE---EEEEE
Q 037675          334 SGLDVG--------GQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYK---KLKWV  393 (418)
Q Consensus       334 ~~L~~~--------~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk---~l~W~  393 (418)
                      .+++|.        .+...+..++.-++.+|++|+..++ .++...++..+.+..-...+||.   .+.|-
T Consensus       120 SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~-QfYpen~~q~d~i~~~a~~aGF~GGlvVd~P  189 (270)
T KOG1541|consen  120 SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL-QFYPENEAQIDMIMQQAMKAGFGGGLVVDWP  189 (270)
T ss_pred             eeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE-EecccchHHHHHHHHHHHhhccCCceeeecc
Confidence            777642        2334566788889999999999866 45555555445566666777875   35553

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.28  E-value=5.1e-11  Score=110.67  Aligned_cols=120  Identities=19%  Similarity=0.197  Sum_probs=89.2

Q ss_pred             CeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCC-C-CCCCCccceEEecCcCcCCCCh
Q 037675          266 RIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHR-F-PFYDNVFDLVHASSGLDVGGQP  342 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~-L-Pf~d~sFDlV~s~~~L~~~~~~  342 (418)
                      .+|||+|||+|.++..+++. +..+  .++|+++.+++.+.++++ .++.++.+. + ++++++||+|+++.+++|..++
T Consensus        15 ~~iLDiGcG~G~~~~~l~~~~~~~~--~giD~s~~~i~~a~~~~~-~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~   91 (194)
T TIGR02081        15 SRVLDLGCGDGELLALLRDEKQVRG--YGIEIDQDGVLACVARGV-NVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP   91 (194)
T ss_pred             CEEEEeCCCCCHHHHHHHhccCCcE--EEEeCCHHHHHHHHHcCC-eEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH
Confidence            38999999999999999765 4444  357999999999988876 666665544 5 4788999999999999998765


Q ss_pred             hHHHHHHHHhhccccCCcEEEEEecc--------------------------cCc----hhHHHHHHHHHHHcCcEEEEE
Q 037675          343 EKLEFLMFDFDRILRAGGLFWLDNFY--------------------------CAN----DEKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       343 ~~le~~L~Ei~RVLRPGG~~ii~~~~--------------------------~~~----ee~~~~~~~l~~~~Gfk~l~W  392 (418)
                      .   .+|.|+.|+++++   +++-+.                          ...    -...+.+.+++++.||+.++.
T Consensus        92 ~---~~l~e~~r~~~~~---ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~  165 (194)
T TIGR02081        92 E---EILDEMLRVGRHA---IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDR  165 (194)
T ss_pred             H---HHHHHHHHhCCeE---EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEE
Confidence            5   8899999988764   222110                          000    012456889999999998875


Q ss_pred             EE
Q 037675          393 VV  394 (418)
Q Consensus       393 ~~  394 (418)
                      ..
T Consensus       166 ~~  167 (194)
T TIGR02081       166 AA  167 (194)
T ss_pred             EE
Confidence            44

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.26  E-value=4.5e-11  Score=118.63  Aligned_cols=121  Identities=17%  Similarity=0.259  Sum_probs=87.7

Q ss_pred             CCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCccceEEecCc
Q 037675          265 IRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNVFDLVHASSG  335 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~sFDlV~s~~~  335 (418)
                      .++|||||||+|.++..++++.  ..++  ++|. +.+++.+++    .|+   +.++.++....++++  +|+|+.+++
T Consensus       150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~--~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~  224 (306)
T TIGR02716       150 VKKMIDVGGGIGDISAAMLKHFPELDST--ILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRI  224 (306)
T ss_pred             CCEEEEeCCchhHHHHHHHHHCCCCEEE--EEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhh
Confidence            3599999999999999999874  4443  4676 667766543    454   234556665556654  699999999


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc---hh---------------------HHHHHHHHHHHcCcEEEE
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN---DE---------------------KKSALTRLIERFGYKKLK  391 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~---ee---------------------~~~~~~~l~~~~Gfk~l~  391 (418)
                      +|+|.+. ....+|.++.|+|||||+++|.++....   ..                     ..++|..++++.||+.++
T Consensus       225 lh~~~~~-~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~  303 (306)
T TIGR02716       225 LYSANEQ-LSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT  303 (306)
T ss_pred             hhcCChH-HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence            9988653 3457999999999999999988763221   00                     025688899999998774

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.26  E-value=8.6e-11  Score=109.84  Aligned_cols=112  Identities=20%  Similarity=0.215  Sum_probs=83.0

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++..++..  +..++  ++|.++.|++.|++    .++  +.+..++.+.++. +++||+|++...  
T Consensus        47 ~~VLDiGcGtG~~al~la~~~~~~~V~--giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~--  121 (187)
T PRK00107         47 ERVLDVGSGAGFPGIPLAIARPELKVT--LVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV--  121 (187)
T ss_pred             CeEEEEcCCCCHHHHHHHHHCCCCeEE--EEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence            58999999999999888763  44553  57999998876654    344  3455677777777 789999998642  


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                        .   .++.++.++.|+|||||++++.......    ..+.++.+.+|+....
T Consensus       122 --~---~~~~~l~~~~~~LkpGG~lv~~~~~~~~----~~l~~~~~~~~~~~~~  166 (187)
T PRK00107        122 --A---SLSDLVELCLPLLKPGGRFLALKGRDPE----EEIAELPKALGGKVEE  166 (187)
T ss_pred             --c---CHHHHHHHHHHhcCCCeEEEEEeCCChH----HHHHHHHHhcCceEee
Confidence              2   2348999999999999999887654322    3366778888997554

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.24  E-value=4.2e-11  Score=118.98  Aligned_cols=126  Identities=25%  Similarity=0.333  Sum_probs=93.7

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhH-HHHHHc---CC-Cce-ee-cccCCCCCCCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYS-EFIAAR---GL-FPL-YL-SLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l-~~a~eR---Gl-i~~-~~-~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      ++|||||||.|.++.+|+.+|...| +++|.+.... ++..-+   |. ... .. -..|.+|. .++||+|+|+++|-|
T Consensus       117 k~VLDIGC~nGY~~frM~~~GA~~V-iGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYH  194 (315)
T PF08003_consen  117 KRVLDIGCNNGYYSFRMLGRGAKSV-IGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYH  194 (315)
T ss_pred             CEEEEecCCCcHHHHHHhhcCCCEE-EEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhc
Confidence            5999999999999999999987544 4689886433 332211   21 122 22 37889998 889999999999999


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEecccCchh--------------------HHHHHHHHHHHcCcEEEEEEEcc
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDE--------------------KKSALTRLIERFGYKKLKWVVGE  396 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee--------------------~~~~~~~l~~~~Gfk~l~W~~~~  396 (418)
                      ..+|-   ..|.++...|||||.+++....-.+++                    ....+...++++||+.++-.-..
T Consensus       195 rr~Pl---~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~  269 (315)
T PF08003_consen  195 RRSPL---DHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVS  269 (315)
T ss_pred             cCCHH---HHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCc
Confidence            88876   899999999999999988765322210                    12568899999999998754433

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.24  E-value=3.9e-11  Score=117.54  Aligned_cols=100  Identities=19%  Similarity=0.113  Sum_probs=76.4

Q ss_pred             CCeEEEECCccCh----HHHHHhhc-------CcEEEEeccCCCHHhHHHHHHcC-------------------------
Q 037675          265 IRIGFDIGGGSGT----FAARMAER-------NVTVITNTLNVDAPYSEFIAARG-------------------------  308 (418)
Q Consensus       265 ~r~VLDvGCGtG~----faa~La~~-------gV~vv~~alD~s~~~l~~a~eRG-------------------------  308 (418)
                      .-+|+|+|||||.    +|..|++.       ++.+  +++|+++.|++.|++.-                         
T Consensus       100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I--~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138      100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKI--LATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEE--EEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            3589999999995    56666654       2444  46899999999887631                         


Q ss_pred             --------CCceeecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          309 --------LFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       309 --------li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                              .+.+...+....|++++.||+|+|.++|+++.+ ...+.++.++.|+|||||++++.+.
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~-~~~~~~l~~l~~~L~pGG~L~lg~~  243 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE-PTQRKLLNRFAEALKPGGYLFLGHS  243 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH-HHHHHHHHHHHHHhCCCeEEEEECc
Confidence                    122334566677778899999999999999854 4456899999999999999988643

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK06202 hypothetical protein; Provisional

Probab=99.23  E-value=8.2e-11  Score=112.14  Aligned_cols=98  Identities=19%  Similarity=0.237  Sum_probs=76.1

Q ss_pred             CCeEEEECCccChHHHHHhh----cC--cEEEEeccCCCHHhHHHHHHcCC---CceeecccCCCCCCCCccceEEecCc
Q 037675          265 IRIGFDIGGGSGTFAARMAE----RN--VTVITNTLNVDAPYSEFIAARGL---FPLYLSLDHRFPFYDNVFDLVHASSG  335 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~----~g--V~vv~~alD~s~~~l~~a~eRGl---i~~~~~~~e~LPf~d~sFDlV~s~~~  335 (418)
                      ..+|||+|||+|.++..|++    .|  +.+  +++|+++.|++.++++..   +.......+.+++++++||+|+++.+
T Consensus        61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v--~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~  138 (232)
T PRK06202         61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEV--TAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF  138 (232)
T ss_pred             CcEEEEeccCCCHHHHHHHHHHHhCCCCcEE--EEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence            45899999999999888764    34  354  358999999999887632   24445566778888899999999999


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +||..++ .+..++.|+.|++|  |.+++.++
T Consensus       139 lhh~~d~-~~~~~l~~~~r~~~--~~~~i~dl  167 (232)
T PRK06202        139 LHHLDDA-EVVRLLADSAALAR--RLVLHNDL  167 (232)
T ss_pred             eecCChH-HHHHHHHHHHHhcC--eeEEEecc
Confidence            9998764 35689999999999  45556554

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.23  E-value=4.9e-11  Score=117.79  Aligned_cols=136  Identities=24%  Similarity=0.278  Sum_probs=97.6

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHH----HcCCCceeecccCCCCCCCCccc
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIA----ARGLFPLYLSLDHRFPFYDNVFD  328 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~----eRGli~~~~~~~e~LPf~d~sFD  328 (418)
                      +.+.+.|++|.  +|||||||-|+++.+++++ ||+|+|  +++|++|.+.+.    ++|+..-+.-..+..+...+.||
T Consensus        64 ~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~G--vTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fD  139 (283)
T COG2230          64 ILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVG--VTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFD  139 (283)
T ss_pred             HHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEE--eeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccc
Confidence            33445688884  9999999999999999998 899974  899999887654    46773122222344455556699


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-------hhH------------HHHHHHHHHHcCcEE
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-------DEK------------KSALTRLIERFGYKK  389 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-------ee~------------~~~~~~l~~~~Gfk~  389 (418)
                      -|++..+|+|... +....++..++++|+|||.+++-......       ..+            ...+....+..||..
T Consensus       140 rIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v  218 (283)
T COG2230         140 RIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVV  218 (283)
T ss_pred             eeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEE
Confidence            9999999999875 34669999999999999999776542211       000            134566677888887


Q ss_pred             EEEEE
Q 037675          390 LKWVV  394 (418)
Q Consensus       390 l~W~~  394 (418)
                      .+|..
T Consensus       219 ~~~~~  223 (283)
T COG2230         219 LDVES  223 (283)
T ss_pred             ehHhh
Confidence            76544

>PRK06922 hypothetical protein; Provisional

Probab=99.23  E-value=3.5e-11  Score=130.00  Aligned_cols=100  Identities=15%  Similarity=0.188  Sum_probs=80.1

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCC--CCCCccceEEecCcC
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFP--FYDNVFDLVHASSGL  336 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LP--f~d~sFDlV~s~~~L  336 (418)
                      .+|||+|||+|.++..+++.  +..++  ++|+++.|++.++++    +. +.+..+++..+|  |++++||+|+++.++
T Consensus       420 ~rVLDIGCGTG~ls~~LA~~~P~~kVt--GIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL  497 (677)
T PRK06922        420 DTIVDVGAGGGVMLDMIEEETEDKRIY--GIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL  497 (677)
T ss_pred             CEEEEeCCCCCHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence            48999999999999888875  45554  589999999988764    22 233457777788  889999999999988


Q ss_pred             cCCC----------ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          337 DVGG----------QPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       337 ~~~~----------~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      |++.          ....+..+|.++.|+|||||.+++.+.
T Consensus       498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            8652          134567999999999999999999875

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.22  E-value=2.6e-10  Score=104.56  Aligned_cols=119  Identities=13%  Similarity=0.174  Sum_probs=85.4

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      .+|||+|||+|.++..+++++..++  ++|.++.+++.++++    +. +.+..++....+  +++||+|+++-.+++..
T Consensus        21 ~~vLdlG~G~G~~~~~l~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~   96 (179)
T TIGR00537        21 DDVLEIGAGTGLVAIRLKGKGKCIL--TTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLE   96 (179)
T ss_pred             CeEEEeCCChhHHHHHHHhcCCEEE--EEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCc
Confidence            4799999999999999999876553  589999999876653    32 223344444432  46999999987766443


Q ss_pred             Ch------------------hHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          341 QP------------------EKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       341 ~~------------------~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      +.                  ..++.++.++.|+|||||.+++......+.   ..+...+++.||....
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~---~~~~~~l~~~gf~~~~  162 (179)
T TIGR00537        97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGE---PDTFDKLDERGFRYEI  162 (179)
T ss_pred             chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCCh---HHHHHHHHhCCCeEEE
Confidence            21                  125678999999999999998877644322   2367778888997653

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.22  E-value=1.1e-10  Score=113.15  Aligned_cols=126  Identities=22%  Similarity=0.288  Sum_probs=86.9

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCCceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ  341 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~  341 (418)
                      .+|||+|||+|.++..+++.|..-+ +++|+++.+++.++++    ++ .    ....++..+.+||+|+++...     
T Consensus       121 ~~VLDiGcGsG~l~i~~~~~g~~~v-~giDis~~~l~~A~~n~~~~~~-~----~~~~~~~~~~~fD~Vvani~~-----  189 (250)
T PRK00517        121 KTVLDVGCGSGILAIAAAKLGAKKV-LAVDIDPQAVEAARENAELNGV-E----LNVYLPQGDLKADVIVANILA-----  189 (250)
T ss_pred             CEEEEeCCcHHHHHHHHHHcCCCeE-EEEECCHHHHHHHHHHHHHcCC-C----ceEEEccCCCCcCEEEEcCcH-----
Confidence            5899999999999998888775422 4689999999887664    32 1    011122223379999986432     


Q ss_pred             hhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEEEEEcC
Q 037675          342 PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKP  414 (418)
Q Consensus       342 ~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qKP  414 (418)
                       ..+..++.++.++|||||++++++.....   .+.+...++..||+.++-..       .++ |...+++|+
T Consensus       190 -~~~~~l~~~~~~~LkpgG~lilsgi~~~~---~~~v~~~l~~~Gf~~~~~~~-------~~~-W~~~~~~~~  250 (250)
T PRK00517        190 -NPLLELAPDLARLLKPGGRLILSGILEEQ---ADEVLEAYEEAGFTLDEVLE-------RGE-WVALVGKKK  250 (250)
T ss_pred             -HHHHHHHHHHHHhcCCCcEEEEEECcHhh---HHHHHHHHHHCCCEEEEEEE-------eCC-EEEEEEEeC
Confidence             23457889999999999999998765432   23467778899998774211       123 555677765

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.22  E-value=1.6e-10  Score=109.46  Aligned_cols=139  Identities=18%  Similarity=0.194  Sum_probs=88.8

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC--------CCCCccc
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP--------FYDNVFD  328 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP--------f~d~sFD  328 (418)
                      +++|  .+|||+|||+|.++..++++.   ..+  +++|+++ |..   ..+ +.++++++...+        +.+++||
T Consensus        49 ~~~~--~~VLDlG~GtG~~t~~l~~~~~~~~~V--~aVDi~~-~~~---~~~-v~~i~~D~~~~~~~~~i~~~~~~~~~D  119 (209)
T PRK11188         49 FKPG--MTVVDLGAAPGGWSQYAVTQIGDKGRV--IACDILP-MDP---IVG-VDFLQGDFRDELVLKALLERVGDSKVQ  119 (209)
T ss_pred             CCCC--CEEEEEcccCCHHHHHHHHHcCCCceE--EEEeccc-ccC---CCC-cEEEecCCCChHHHHHHHHHhCCCCCC
Confidence            3555  489999999999999998873   244  3578876 221   123 255666666643        6788999


Q ss_pred             eEEecCcCcCCCChh--------HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCC
Q 037675          329 LVHASSGLDVGGQPE--------KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGET  400 (418)
Q Consensus       329 lV~s~~~L~~~~~~~--------~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~  400 (418)
                      +|+|..+.++...+.        ..+.+|.++.|+|||||.|++..+..  ++..+.+ ..++ -+|+.+.+....-...
T Consensus       120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l-~~l~-~~f~~v~~~Kp~ssr~  195 (209)
T PRK11188        120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYL-REIR-SLFTKVKVRKPDSSRA  195 (209)
T ss_pred             EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHH-HHHH-hCceEEEEECCccccc
Confidence            999987766544321        12468999999999999998876533  2222222 2222 2588887643222223


Q ss_pred             CccceEEEEEE
Q 037675          401 GKSEVYLSAVL  411 (418)
Q Consensus       401 ~~~e~~l~Ai~  411 (418)
                      ...|.|+.+.-
T Consensus       196 ~s~e~~~~~~~  206 (209)
T PRK11188        196 RSREVYIVATG  206 (209)
T ss_pred             cCceeEEEeec
Confidence            45588887653

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.21  E-value=6.5e-11  Score=121.88  Aligned_cols=102  Identities=25%  Similarity=0.352  Sum_probs=78.8

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcC--C-CceeecccCCCCCCCCccceEEec
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARG--L-FPLYLSLDHRFPFYDNVFDLVHAS  333 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRG--l-i~~~~~~~e~LPf~d~sFDlV~s~  333 (418)
                      +.+++|  .+|||||||+|.++.+++++ ++.++  ++|+|+.|++.++++.  + +.+...+...+   +++||.|++.
T Consensus       163 l~l~~g--~rVLDIGcG~G~~a~~la~~~g~~V~--giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~  235 (383)
T PRK11705        163 LQLKPG--MRVLDIGCGWGGLARYAAEHYGVSVV--GVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSV  235 (383)
T ss_pred             hCCCCC--CEEEEeCCCccHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEe
Confidence            345555  48999999999999999986 77764  5899999999988763  2 12223344433   5789999999


Q ss_pred             CcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .+++|... ...+.++.++.|+|||||++++...
T Consensus       236 ~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        236 GMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             CchhhCCh-HHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            99988754 3456899999999999999988764

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.21  E-value=4.6e-11  Score=112.31  Aligned_cols=120  Identities=18%  Similarity=0.162  Sum_probs=83.9

Q ss_pred             CCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC--Cceeeccc-CCCC--CCCCccceEEec
Q 037675          265 IRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLD-HRFP--FYDNVFDLVHAS  333 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~-e~LP--f~d~sFDlV~s~  333 (418)
                      ..+|||+|||+|.++..|++.  +..+  +++|+++.+++.+.++    ++  +.++.+++ +.++  +++++||+|++.
T Consensus        41 ~~~VLDiGcGtG~~~~~la~~~p~~~v--~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         41 APIHLEIGFGKGEFLVEMAKANPDINF--IGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCeEEEEccCCCHHHHHHHHHCCCccE--EEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            458999999999999999876  3344  3579999999877652    33  24455676 7777  788999999987


Q ss_pred             CcCcCCCCh-----hHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEE
Q 037675          334 SGLDVGGQP-----EKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKK  389 (418)
Q Consensus       334 ~~L~~~~~~-----~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~  389 (418)
                      ....+....     ...+.++.++.|+|||||+|++...   .....+.+.+.++..|++.
T Consensus       119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~---~~~~~~~~~~~~~~~g~~~  176 (202)
T PRK00121        119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD---WEGYAEYMLEVLSAEGGFL  176 (202)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC---CHHHHHHHHHHHHhCcccc
Confidence            654332111     0134789999999999999988643   2233334566667777643

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.21  E-value=4e-11  Score=112.22  Aligned_cols=130  Identities=19%  Similarity=0.256  Sum_probs=98.9

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeeccc-CCCC-CCCCccce
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLD-HRFP-FYDNVFDL  329 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~-e~LP-f~d~sFDl  329 (418)
                      .|.+.  +++|.  +|||+|||.|.+.++|.+ +++.+.  ++|++++.+..+.+||+ ++++++. +.|+ |+|++||.
T Consensus         6 ~I~~~--I~pgs--rVLDLGCGdG~LL~~L~~~k~v~g~--GvEid~~~v~~cv~rGv-~Viq~Dld~gL~~f~d~sFD~   78 (193)
T PF07021_consen    6 IIAEW--IEPGS--RVLDLGCGDGELLAYLKDEKQVDGY--GVEIDPDNVAACVARGV-SVIQGDLDEGLADFPDQSFDY   78 (193)
T ss_pred             HHHHH--cCCCC--EEEecCCCchHHHHHHHHhcCCeEE--EEecCHHHHHHHHHcCC-CEEECCHHHhHhhCCCCCccE
Confidence            34444  45564  899999999999999998 578876  48999999999999999 7887643 4564 89999999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec---ccC--------c-----h----------h----HHHHHH
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF---YCA--------N-----D----------E----KKSALT  379 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~---~~~--------~-----e----------e----~~~~~~  379 (418)
                      |+.+.+++....+.   .+|.||.||   |...+++-+   +|.        +     +          .    .-+.++
T Consensus        79 VIlsqtLQ~~~~P~---~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe  152 (193)
T PF07021_consen   79 VILSQTLQAVRRPD---EVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFE  152 (193)
T ss_pred             EehHhHHHhHhHHH---HHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHH
Confidence            99999999987665   899999777   445666544   111        0     0          0    125689


Q ss_pred             HHHHHcCcEEEEEEEc
Q 037675          380 RLIERFGYKKLKWVVG  395 (418)
Q Consensus       380 ~l~~~~Gfk~l~W~~~  395 (418)
                      ++.++.|++.++....
T Consensus       153 ~lc~~~~i~I~~~~~~  168 (193)
T PF07021_consen  153 DLCRELGIRIEERVFL  168 (193)
T ss_pred             HHHHHCCCEEEEEEEE
Confidence            9999999998875543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.20  E-value=3.9e-11  Score=113.18  Aligned_cols=95  Identities=19%  Similarity=0.205  Sum_probs=74.7

Q ss_pred             eEEEECCccChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHc-----CC--CceeecccCCCC-CCCCccceEEecCcCc
Q 037675          267 IGFDIGGGSGTFAARMAE-RNVTVITNTLNVDAPYSEFIAAR-----GL--FPLYLSLDHRFP-FYDNVFDLVHASSGLD  337 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~-~gV~vv~~alD~s~~~l~~a~eR-----Gl--i~~~~~~~e~LP-f~d~sFDlV~s~~~L~  337 (418)
                      .||+||||||..-.+.-- .++.+.  .+|+++.|-+++.++     .+  ..++++..|++| .+|++||.|++..+|.
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt--~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC  156 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVT--CLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC  156 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEE--EeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence            689999999987666553 355543  379999999876442     11  124568899999 8999999999999998


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      ...++.   +.|.|+.|+|||||.+++-.
T Consensus       157 Sve~~~---k~L~e~~rlLRpgG~iifiE  182 (252)
T KOG4300|consen  157 SVEDPV---KQLNEVRRLLRPGGRIIFIE  182 (252)
T ss_pred             ccCCHH---HHHHHHHHhcCCCcEEEEEe
Confidence            876665   89999999999999986654

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.20  E-value=7e-11  Score=107.16  Aligned_cols=98  Identities=21%  Similarity=0.194  Sum_probs=77.8

Q ss_pred             ccCCCHHhHHHHHHcC---------CCceeecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEE
Q 037675          293 TLNVDAPYSEFIAARG---------LFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFW  363 (418)
Q Consensus       293 alD~s~~~l~~a~eRG---------li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~i  363 (418)
                      ++|+|++|++.|++|-         -+.+..++++++|+++++||+|++..+++++.++.   .+|.|+.|+|||||.++
T Consensus         2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~---~~l~ei~rvLkpGG~l~   78 (160)
T PLN02232          2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL---RAMKEMYRVLKPGSRVS   78 (160)
T ss_pred             eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH---HHHHHHHHHcCcCeEEE
Confidence            5799999999986541         13566789999999999999999999999987655   89999999999999998


Q ss_pred             EEecccCc--------------------------hh------------HHHHHHHHHHHcCcEEEEEE
Q 037675          364 LDNFYCAN--------------------------DE------------KKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       364 i~~~~~~~--------------------------ee------------~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      +.++....                          +.            ..+++..++++.||+.+++.
T Consensus        79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~  146 (160)
T PLN02232         79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY  146 (160)
T ss_pred             EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence            88753210                          00            12567889999999988654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.19  E-value=3.4e-11  Score=115.14  Aligned_cols=135  Identities=20%  Similarity=0.285  Sum_probs=103.0

Q ss_pred             HHHHHHc-cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCcee-ecccCCC-C-CCCCccc
Q 037675          253 LIDDVLA-LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLY-LSLDHRF-P-FYDNVFD  328 (418)
Q Consensus       253 ~I~~lL~-l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~-~~~~e~L-P-f~d~sFD  328 (418)
                      .+.++|. ...|..+++||+|||||-++..|..+--..  .++|+|++|++.|.++|+.... ++....+ + ..++.||
T Consensus       113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~l--tGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D  190 (287)
T COG4976         113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRL--TGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD  190 (287)
T ss_pred             HHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhc--cCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence            5667765 456779999999999999999998874333  2479999999999999985443 3433322 2 4577899


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc-------Cchh-----HHHHHHHHHHHcCcEEEEE
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC-------ANDE-----KKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~-------~~ee-----~~~~~~~l~~~~Gfk~l~W  392 (418)
                      +|.+..+|....   +++.++.-+.+.|+|||.|.++....       .++.     .+.+...+++..||..+.-
T Consensus       191 Li~AaDVl~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~  263 (287)
T COG4976         191 LIVAADVLPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAI  263 (287)
T ss_pred             chhhhhHHHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEe
Confidence            999999999885   45689999999999999999986521       1121     2356788999999998863

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.19  E-value=1.3e-11  Score=101.86  Aligned_cols=89  Identities=25%  Similarity=0.331  Sum_probs=52.6

Q ss_pred             EEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CCCc--eeecc-cCCCCC-CCCccceEEecCcCcC
Q 037675          269 FDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GLFP--LYLSL-DHRFPF-YDNVFDLVHASSGLDV  338 (418)
Q Consensus       269 LDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gli~--~~~~~-~e~LPf-~d~sFDlV~s~~~L~~  338 (418)
                      ||+|||+|.++..+.++  +..++  ++|+|+.|++.+++|    +...  ..... .+.... ..++||+|++..++||
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~--~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~   78 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYT--GVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH   78 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEE--EEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred             CEeCccChHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence            79999999999999888  44443  589999999655443    2211  11111 121222 2369999999999999


Q ss_pred             CCChhHHHHHHHHhhccccCCcEE
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLF  362 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~  362 (418)
                      +.   +++.++..+.++|||||.|
T Consensus        79 l~---~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   79 LE---DIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -S----HHHHHHHHTTT-TSS-EE
T ss_pred             hh---hHHHHHHHHHHHcCCCCCC
Confidence            94   3459999999999999975

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.18  E-value=1.1e-10  Score=109.77  Aligned_cols=98  Identities=17%  Similarity=0.255  Sum_probs=73.6

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHH----HHHHcCC-CceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSE----FIAARGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~----~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      .++||+|||.|..+.+|+++|..|.  ++|.++..++    .|.++++ +.....+.+...++ +.||+|++..++++..
T Consensus        32 g~~LDlgcG~GRNalyLA~~G~~Vt--AvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~  108 (192)
T PF03848_consen   32 GKALDLGCGEGRNALYLASQGFDVT--AVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQ  108 (192)
T ss_dssp             SEEEEES-TTSHHHHHHHHTT-EEE--EEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-
T ss_pred             CcEEEcCCCCcHHHHHHHHCCCeEE--EEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCC
Confidence            3899999999999999999998874  5799986664    4555676 22334566666664 6899999998888875


Q ss_pred             ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          341 QPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                       ++.+..++..|...+||||++++..+
T Consensus       109 -~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen  109 -RELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             -GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -HHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence             45678899999999999999988655

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.18  E-value=2.3e-10  Score=106.20  Aligned_cols=115  Identities=22%  Similarity=0.292  Sum_probs=76.7

Q ss_pred             CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++..++..+  ..+  +++|.++.|++.+++    .|+  +.++.++.+.++ .+++||+|++.. ++
T Consensus        44 ~~vLDiGcGtG~~s~~la~~~~~~~V--~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~  119 (181)
T TIGR00138        44 KKVIDIGSGAGFPGIPLAIARPELKL--TLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA  119 (181)
T ss_pred             CeEEEecCCCCccHHHHHHHCCCCeE--EEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence            589999999999998887653  344  357999988866543    354  344557777764 467999999865 32


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                            .++.++.++.|+|||||.+++........+..+ ..+-....|++.++
T Consensus       120 ------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~-~~e~~~~~~~~~~~  166 (181)
T TIGR00138       120 ------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEE-AKRKCQVLGVEPLE  166 (181)
T ss_pred             ------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHH-HHHhhhhcCceEee
Confidence                  233788899999999999987643222222211 22333346777663

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.18  E-value=3e-10  Score=107.19  Aligned_cols=122  Identities=14%  Similarity=0.168  Sum_probs=90.6

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC-------CCceeecccCCCCCCCCccceEEecCcCc
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG-------LFPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG-------li~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      ..+|||+|||+|.++..+++.+..++  ++|+++.|++.|+++.       -+.+..++.+.++   ++||+|++..+++
T Consensus        56 ~~~vLDiGcG~G~~~~~la~~~~~v~--gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~  130 (219)
T TIGR02021        56 GKRVLDAGCGTGLLSIELAKRGAIVK--AVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLI  130 (219)
T ss_pred             CCEEEEEeCCCCHHHHHHHHCCCEEE--EEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHH
Confidence            46899999999999999999877664  5899999998887652       1234455666655   8899999999888


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEeccc------------Cch--------hHHHHHHHHHHHcCcEEEEE
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC------------AND--------EKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~------------~~e--------e~~~~~~~l~~~~Gfk~l~W  392 (418)
                      ++.. .++..++.++.|++++|+++.+.....            ...        ...+++..+++.+||+.+.-
T Consensus       131 ~~~~-~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~  204 (219)
T TIGR02021       131 HYPA-SDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVRE  204 (219)
T ss_pred             hCCH-HHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeee
Confidence            7743 457789999999999887765543210            000        02356888999999988753

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.17  E-value=5.3e-10  Score=103.18  Aligned_cols=118  Identities=16%  Similarity=0.174  Sum_probs=81.7

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccceE
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFDLV  330 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFDlV  330 (418)
                      .+.++  .+|||+|||+|.++..+++++  ..++  ++|+++.+++.++++    ++  +.+..++.. .++ ++.||+|
T Consensus        28 ~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~v~--~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v  101 (187)
T PRK08287         28 ELHRA--KHLIDVGAGTGSVSIEAALQFPSLQVT--AIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAI  101 (187)
T ss_pred             CCCCC--CEEEEECCcCCHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEE
Confidence            44444  589999999999999998763  3443  579999988876542    33  223334432 233 4689999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      ++......      +..++.++.++|||||++++.....   +..+++..++++.||+.+.
T Consensus       102 ~~~~~~~~------~~~~l~~~~~~Lk~gG~lv~~~~~~---~~~~~~~~~l~~~g~~~~~  153 (187)
T PRK08287        102 FIGGSGGN------LTAIIDWSLAHLHPGGRLVLTFILL---ENLHSALAHLEKCGVSELD  153 (187)
T ss_pred             EECCCccC------HHHHHHHHHHhcCCCeEEEEEEecH---hhHHHHHHHHHHCCCCcce
Confidence            99765432      3478899999999999998865422   2223467789999997655

>PRK14968 putative methyltransferase; Provisional

Probab=99.15  E-value=2.1e-09  Score=97.80  Aligned_cols=119  Identities=18%  Similarity=0.274  Sum_probs=83.1

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC----CceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL----FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl----i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++..+++++..++  ++|.++.+++.++++    +.    +.+...+... ++.+++||+|+++.-+.
T Consensus        25 ~~vLd~G~G~G~~~~~l~~~~~~v~--~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~  101 (188)
T PRK14968         25 DRVLEVGTGSGIVAIVAAKNGKKVV--GVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYL  101 (188)
T ss_pred             CEEEEEccccCHHHHHHHhhcceEE--EEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcC
Confidence            4899999999999999998876654  479999998877442    32    2334443322 34566899999875443


Q ss_pred             CCC------------------ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675          338 VGG------------------QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL  390 (418)
Q Consensus       338 ~~~------------------~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l  390 (418)
                      +..                  ....+..++.++.++|||||.+++........   +.+..+++++||+..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~---~~l~~~~~~~g~~~~  169 (188)
T PRK14968        102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGE---DEVLEYLEKLGFEAE  169 (188)
T ss_pred             CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCH---HHHHHHHHHCCCeee
Confidence            211                  12335678999999999999987765533222   346778899999765

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.13  E-value=7.6e-10  Score=105.39  Aligned_cols=99  Identities=17%  Similarity=0.041  Sum_probs=77.2

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHH-HHcCC-----------------CceeecccCCCCCC-CCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFI-AARGL-----------------FPLYLSLDHRFPFY-DNV  326 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a-~eRGl-----------------i~~~~~~~e~LPf~-d~s  326 (418)
                      .+|||+|||.|..+.+|+++|..|+  ++|+|+..++.+ .+.|+                 +.++.++...++.. ...
T Consensus        36 ~rvLd~GCG~G~da~~LA~~G~~V~--gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~  113 (213)
T TIGR03840        36 ARVFVPLCGKSLDLAWLAEQGHRVL--GVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP  113 (213)
T ss_pred             CeEEEeCCCchhHHHHHHhCCCeEE--EEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence            4899999999999999999998875  589999888864 33433                 23345666666542 357


Q ss_pred             cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ||.|+...++++.. +...+.++..|.+.|||||++++..+
T Consensus       114 fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       114 VDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             cCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            99999998888774 55667899999999999998766554

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PTZ00146 fibrillarin; Provisional

Probab=99.12  E-value=1.3e-09  Score=108.38  Aligned_cols=147  Identities=12%  Similarity=0.186  Sum_probs=91.2

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHH----hHHHHHHcCCCceeecccCC---CCCCCCccceE
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAP----YSEFIAARGLFPLYLSLDHR---FPFYDNVFDLV  330 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~----~l~~a~eRGli~~~~~~~e~---LPf~d~sFDlV  330 (418)
                      .+.+|  .+|||+|||+|.++.++++. +-....+++|+++.    +++.+.+|.-+..++.++..   ++.+..+||+|
T Consensus       129 ~IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV  206 (293)
T PTZ00146        129 PIKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVI  206 (293)
T ss_pred             ccCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEE
Confidence            35666  48999999999999999987 21111145799875    55666655322344444321   22345689999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC---c---hh-HHHHHHHHHHHcCcEEEEEEEcccCCCCcc
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA---N---DE-KKSALTRLIERFGYKKLKWVVGEKGETGKS  403 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~---~---ee-~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~  403 (418)
                      ++... +    ++....++.++.|+|||||+|+|.-....   .   ++ ..++. +.++..||+.+.-...+.  -.++
T Consensus       207 ~~Dva-~----pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev-~~L~~~GF~~~e~v~L~P--y~~~  278 (293)
T PTZ00146        207 FADVA-Q----PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEV-QKLKKEGLKPKEQLTLEP--FERD  278 (293)
T ss_pred             EEeCC-C----cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHH-HHHHHcCCceEEEEecCC--ccCC
Confidence            99764 2    22334677899999999999988422111   1   12 22223 678888999876333221  1356


Q ss_pred             ceEEEEEEEcCC
Q 037675          404 EVYLSAVLQKPV  415 (418)
Q Consensus       404 e~~l~Ai~qKP~  415 (418)
                      +..+.++++.+.
T Consensus       279 h~~v~~~~~~~~  290 (293)
T PTZ00146        279 HAVVIGVYRPVK  290 (293)
T ss_pred             cEEEEEEEcCCc
Confidence            777777776543

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.12  E-value=9.4e-10  Score=104.41  Aligned_cols=121  Identities=18%  Similarity=0.277  Sum_probs=89.7

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCC-CCCCccceEEecCcCcCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFP-FYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LP-f~d~sFDlV~s~~~L~~~  339 (418)
                      .+|||+|||+|.++..+++.+..++  ++|+++.+++.+.++    +. +.+...+...++ ..++.||+|++..++++.
T Consensus        50 ~~vLdiG~G~G~~~~~l~~~~~~v~--~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~  127 (233)
T PRK05134         50 KRVLDVGCGGGILSESMARLGADVT--GIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV  127 (233)
T ss_pred             CeEEEeCCCCCHHHHHHHHcCCeEE--EEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence            4899999999999999998876654  479999988877654    33 123334444443 356899999999999988


Q ss_pred             CChhHHHHHHHHhhccccCCcEEEEEecccCc---------------------h-----hHHHHHHHHHHHcCcEEEE
Q 037675          340 GQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN---------------------D-----EKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       340 ~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~---------------------e-----e~~~~~~~l~~~~Gfk~l~  391 (418)
                      .++.   .+|.++.++|+|||++++..+....                     .     -..+.+..+++..||+.+.
T Consensus       128 ~~~~---~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~  202 (233)
T PRK05134        128 PDPA---SFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQD  202 (233)
T ss_pred             CCHH---HHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEee
Confidence            7654   7899999999999999887542100                     0     0124588899999999764

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.11  E-value=6.2e-10  Score=104.63  Aligned_cols=122  Identities=18%  Similarity=0.254  Sum_probs=90.5

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCC-CCccceEEecCcCc
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFY-DNVFDLVHASSGLD  337 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~-d~sFDlV~s~~~L~  337 (418)
                      ..+|||+|||+|.++..+++.+..++  ++|.++.+++.+.++    +.  +.+..++.+.++.. +++||+|++..+++
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~~~v~--~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~  123 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLGANVT--GIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE  123 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcCCeEE--EEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence            35899999999999999988876654  579999998877653    32  23344566666554 47999999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccCc--------------------hh------HHHHHHHHHHHcCcEEEE
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN--------------------DE------KKSALTRLIERFGYKKLK  391 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--------------------ee------~~~~~~~l~~~~Gfk~l~  391 (418)
                      +..++.   .++.++.++|+|||++++.......                    ..      ....+.++++..||+.+.
T Consensus       124 ~~~~~~---~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~  200 (224)
T TIGR01983       124 HVPDPQ---AFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKD  200 (224)
T ss_pred             hCCCHH---HHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeee
Confidence            887655   8999999999999999887542110                    00      124578889999998764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.08  E-value=2.7e-10  Score=109.65  Aligned_cols=95  Identities=25%  Similarity=0.345  Sum_probs=70.7

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCC-----ceeecccCCCCC--CCCccceEE
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLF-----PLYLSLDHRFPF--YDNVFDLVH  331 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli-----~~~~~~~e~LPf--~d~sFDlV~  331 (418)
                      ....+. +.++|+|||+|.-+..+++..-.|+  +.|+++.|+++|.+.-.+     +.-....+-.++  .++|.|||.
T Consensus        29 ~~~~~h-~~a~DvG~G~Gqa~~~iae~~k~VI--atD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~  105 (261)
T KOG3010|consen   29 SRTEGH-RLAWDVGTGNGQAARGIAEHYKEVI--ATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLIT  105 (261)
T ss_pred             hhCCCc-ceEEEeccCCCcchHHHHHhhhhhe--eecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeeh
Confidence            345554 5899999999966677777754443  469999999998875431     222223333444  499999999


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCc
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGG  360 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG  360 (418)
                      |..|+||.    +++.++.+++||||+.|
T Consensus       106 ~Aqa~HWF----dle~fy~~~~rvLRk~G  130 (261)
T KOG3010|consen  106 AAQAVHWF----DLERFYKEAYRVLRKDG  130 (261)
T ss_pred             hhhhHHhh----chHHHHHHHHHHcCCCC
Confidence            99999987    46699999999999987

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.08  E-value=1.2e-09  Score=104.04  Aligned_cols=135  Identities=21%  Similarity=0.279  Sum_probs=88.5

Q ss_pred             cHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCC
Q 037675          250 NDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFP  321 (418)
Q Consensus       250 y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LP  321 (418)
                      +..++..++..-.....+|||+|||+|.++..+++.  +..++  ++|+++.+++.+++    .++  +.+..++... +
T Consensus        73 ~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~--~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~  149 (251)
T TIGR03534        73 TEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVT--AVDISPEALAVARKNAARLGLDNVTFLQSDWFE-P  149 (251)
T ss_pred             hHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-c
Confidence            344455444432222348999999999999999986  34443  57999999987654    344  2344455544 4


Q ss_pred             CCCCccceEEecCcCcC------CCC-----------------hhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHH
Q 037675          322 FYDNVFDLVHASSGLDV------GGQ-----------------PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSAL  378 (418)
Q Consensus       322 f~d~sFDlV~s~~~L~~------~~~-----------------~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~  378 (418)
                      +++++||+|+++--+..      +..                 ......++.++.++|||||.+++...+..    .+.+
T Consensus       150 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~----~~~~  225 (251)
T TIGR03534       150 LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQ----GEAV  225 (251)
T ss_pred             CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccH----HHHH
Confidence            66789999998532221      110                 01124678999999999999988654322    2347


Q ss_pred             HHHHHHcCcEEEE
Q 037675          379 TRLIERFGYKKLK  391 (418)
Q Consensus       379 ~~l~~~~Gfk~l~  391 (418)
                      .+++++.||+.+.
T Consensus       226 ~~~l~~~gf~~v~  238 (251)
T TIGR03534       226 RALFEAAGFADVE  238 (251)
T ss_pred             HHHHHhCCCCceE
Confidence            7778889998764

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.07  E-value=8.3e-10  Score=93.24  Aligned_cols=92  Identities=22%  Similarity=0.194  Sum_probs=66.8

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH----cCCC--ceeecccCC-CCCCCCccceEEecCcC
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA----RGLF--PLYLSLDHR-FPFYDNVFDLVHASSGL  336 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e----RGli--~~~~~~~e~-LPf~d~sFDlV~s~~~L  336 (418)
                      .+|||+|||+|.++..++++  +..+  +++|.++.+++.+++    .++.  .+..++... ++...++||.|++....
T Consensus        21 ~~vldlG~G~G~~~~~l~~~~~~~~v--~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~   98 (124)
T TIGR02469        21 DVLWDIGAGSGSITIEAARLVPNGRV--YAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG   98 (124)
T ss_pred             CEEEEeCCCCCHHHHHHHHHCCCceE--EEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence            48999999999999999986  2344  357999998887654    2332  223344333 34445789999997654


Q ss_pred             cCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          337 DVGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      ..      .+.++.++.|+|||||+|++.
T Consensus        99 ~~------~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        99 GL------LQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             hh------HHHHHHHHHHHcCCCCEEEEE
Confidence            32      348899999999999999875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.07  E-value=2.4e-09  Score=108.90  Aligned_cols=135  Identities=18%  Similarity=0.206  Sum_probs=89.0

Q ss_pred             CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHH----cCCCc-eeecccCCCCCCCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAA----RGLFP-LYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~e----RGli~-~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      .+|||+|||+|.++..+++++  ..+  .++|+++.+++.+++    .++.. +..++.  +...++.||+|+++-.||.
T Consensus       198 g~VLDlGCG~G~ls~~la~~~p~~~v--~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~--~~~~~~~fDlIvsNPPFH~  273 (342)
T PRK09489        198 GKVLDVGCGAGVLSAVLARHSPKIRL--TLSDVSAAALESSRATLAANGLEGEVFASNV--FSDIKGRFDMIISNPPFHD  273 (342)
T ss_pred             CeEEEeccCcCHHHHHHHHhCCCCEE--EEEECCHHHHHHHHHHHHHcCCCCEEEEccc--ccccCCCccEEEECCCccC
Confidence            379999999999999999874  344  358999999987654    34421 222333  2234678999999988875


Q ss_pred             CC--ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEEEEEcCCC
Q 037675          339 GG--QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPVR  416 (418)
Q Consensus       339 ~~--~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qKP~~  416 (418)
                      ..  .....+.++.++.|.|||||.++|.......      |..++++. |.....  ..++   ...+++.|+-+|+.+
T Consensus       274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~------y~~~l~~~-Fg~~~~--la~~---~~f~v~~a~~~~~~~  341 (342)
T PRK09489        274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLP------YPDLLDET-FGSHEV--LAQT---GRFKVYRAIMTRQAK  341 (342)
T ss_pred             CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCC------hHHHHHHH-cCCeEE--EEeC---CCEEEEEEEccCcCC
Confidence            32  2345679999999999999999887653221      22233322 444433  2222   346777888777653

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.07  E-value=5.9e-10  Score=103.99  Aligned_cols=120  Identities=14%  Similarity=0.242  Sum_probs=78.1

Q ss_pred             CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCC---CCCCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFP---FYDNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LP---f~d~sFDlV~s~~  334 (418)
                      .+|||+|||+|.++..|+++.  ..+  +++|+++.+++.|.+    .++  +.++.+++..++   +++++||.|++..
T Consensus        18 ~~ilDiGcG~G~~~~~la~~~p~~~v--~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        18 PLHLEIGCGKGRFLIDMAKQNPDKNF--LGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             ceEEEeCCCccHHHHHHHHhCCCCCE--EEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            489999999999999999873  334  357999999877654    343  234456665543   5567999999875


Q ss_pred             cCcCCCCh-----hHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcC-cEEE
Q 037675          335 GLDVGGQP-----EKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFG-YKKL  390 (418)
Q Consensus       335 ~L~~~~~~-----~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~G-fk~l  390 (418)
                      ...+....     -..+.++.++.|+|||||.|++....   +...+.+.+.+...+ |..+
T Consensus        96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~---~~~~~~~~~~~~~~~~f~~~  154 (194)
T TIGR00091        96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN---EPLFEDMLKVLSENDLFENT  154 (194)
T ss_pred             CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC---HHHHHHHHHHHHhCCCeEec
Confidence            43332211     01136899999999999999775432   222223344444444 6654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.06  E-value=2.1e-10  Score=111.55  Aligned_cols=94  Identities=17%  Similarity=0.265  Sum_probs=75.9

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC-CCceee-----------cccCCCCCCCCccceEEec
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG-LFPLYL-----------SLDHRFPFYDNVFDLVHAS  333 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG-li~~~~-----------~~~e~LPf~d~sFDlV~s~  333 (418)
                      ++|||+|||+|-++..|+..|..|.  ++|+++.|++.|++.- .-|...           .+.|.+   .+.||.|+|+
T Consensus        91 ~~ilDvGCGgGLLSepLArlga~V~--GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs  165 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARLGAQVT--GIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS  165 (282)
T ss_pred             ceEEEeccCccccchhhHhhCCeeE--eecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence            6799999999999999999998875  5899999999998752 112211           223332   2349999999


Q ss_pred             CcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .+++|..+++   .++.-+-+.|||||.++|++.
T Consensus       166 evleHV~dp~---~~l~~l~~~lkP~G~lfitti  196 (282)
T KOG1270|consen  166 EVLEHVKDPQ---EFLNCLSALLKPNGRLFITTI  196 (282)
T ss_pred             HHHHHHhCHH---HHHHHHHHHhCCCCceEeeeh
Confidence            9999998777   889999999999999999885

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.06  E-value=2e-09  Score=101.41  Aligned_cols=123  Identities=17%  Similarity=0.200  Sum_probs=86.8

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      .+|||+|||+|.++..|++.+..+  .++|+++.|++.|+++    +.   +.+..++   ++..+++||+|++..+++|
T Consensus        65 ~~vLDvGcG~G~~~~~l~~~~~~v--~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~~  139 (230)
T PRK07580         65 LRILDAGCGVGSLSIPLARRGAKV--VASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLIH  139 (230)
T ss_pred             CEEEEEeCCCCHHHHHHHHcCCEE--EEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhhc
Confidence            589999999999999999988664  3589999999988764    22   2233333   5666789999999999988


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEecc------------cC-c-h------hHHHHHHHHHHHcCcEEEEEEE
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFY------------CA-N-D------EKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~------------~~-~-e------e~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      +.++ .+..++.++.+.+++++.+.+....            .. . .      -..+.+..+++..||+......
T Consensus       140 ~~~~-~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  214 (230)
T PRK07580        140 YPQE-DAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER  214 (230)
T ss_pred             CCHH-HHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence            7543 4678999999988665554332110            00 0 0      0134588889999998776433

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=1.6e-09  Score=107.99  Aligned_cols=119  Identities=19%  Similarity=0.240  Sum_probs=84.2

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCCc-eeecccCCCCCCC-CccceEEecCcCcC
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLFP-LYLSLDHRFPFYD-NVFDLVHASSGLDV  338 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli~-~~~~~~e~LPf~d-~sFDlV~s~~~L~~  338 (418)
                      .++|||+|||+|-++.+.++.|..-+ .++|+++..++.+++    .++.. ........+..+. +.||+|+|+-.-+ 
T Consensus       163 g~~vlDvGcGSGILaIAa~kLGA~~v-~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~-  240 (300)
T COG2264         163 GKTVLDVGCGSGILAIAAAKLGAKKV-VGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAE-  240 (300)
T ss_pred             CCEEEEecCChhHHHHHHHHcCCceE-EEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHH-
Confidence            36999999999999999999996633 357888888876655    34422 1122223333444 5999999975322 


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEE
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~  393 (418)
                           -+..+..++.+.|||||++++++.....   .+...+.++..||+.+...
T Consensus       241 -----vl~~La~~~~~~lkpgg~lIlSGIl~~q---~~~V~~a~~~~gf~v~~~~  287 (300)
T COG2264         241 -----VLVELAPDIKRLLKPGGRLILSGILEDQ---AESVAEAYEQAGFEVVEVL  287 (300)
T ss_pred             -----HHHHHHHHHHHHcCCCceEEEEeehHhH---HHHHHHHHHhCCCeEeEEE
Confidence                 2347888999999999999999875433   2346677788899887643

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.04  E-value=1.8e-09  Score=104.08  Aligned_cols=160  Identities=16%  Similarity=0.267  Sum_probs=112.3

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhcC----cEEEEeccCCCHHhHHHHHHcCC------Cceeecc---cCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERN----VTVITNTLNVDAPYSEFIAARGL------FPLYLSL---DHR  319 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~g----V~vv~~alD~s~~~l~~a~eRGl------i~~~~~~---~e~  319 (418)
                      -.+++++.......+||+||||.|....-+.+-+    ..+  .+.|.++..++..+++--      ...+.+.   .-.
T Consensus        60 Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v--~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~  137 (264)
T KOG2361|consen   60 EFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKV--YACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLK  137 (264)
T ss_pred             hhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEE--EEcCCChHHHHHHHhccccchhhhcccceeccchhcc
Confidence            3455655554444489999999998887776652    444  468999999988776531      1233331   113


Q ss_pred             CCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc--------------------h------h
Q 037675          320 FPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN--------------------D------E  373 (418)
Q Consensus       320 LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--------------------e------e  373 (418)
                      -|...+++|+|.+..+|.-.+ ++.+..++.++.|+|||||.+++.|+....                    +      -
T Consensus       138 ~~~~~~svD~it~IFvLSAi~-pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF  216 (264)
T KOG2361|consen  138 EPPEEGSVDIITLIFVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFF  216 (264)
T ss_pred             CCCCcCccceEEEEEEEeccC-hHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeec
Confidence            367789999999999998765 456789999999999999999999872211                    0      0


Q ss_pred             HHHHHHHHHHHcCcEEEEEEEcccC------CCCccceEEEEEEEcCC
Q 037675          374 KKSALTRLIERFGYKKLKWVVGEKG------ETGKSEVYLSAVLQKPV  415 (418)
Q Consensus       374 ~~~~~~~l~~~~Gfk~l~W~~~~k~------d~~~~e~~l~Ai~qKP~  415 (418)
                      ..+++..++..+||..+.-.+..+.      ......+|+.++++||.
T Consensus       217 ~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~~  264 (264)
T KOG2361|consen  217 TEEELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKPL  264 (264)
T ss_pred             cHHHHHHHHHhcccchhcccceeeeeeehhccCccceEEEEEEeecCC
Confidence            2367889999999987654433221      12345789999999984

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.04  E-value=2.1e-09  Score=99.35  Aligned_cols=99  Identities=15%  Similarity=0.192  Sum_probs=65.1

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC--------CCCCccc
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP--------FYDNVFD  328 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP--------f~d~sFD  328 (418)
                      +.+|  .+|||+|||+|.++..++++.   ..++  ++|+++.+    ...++ .+..++..+.+        +++++||
T Consensus        30 i~~g--~~VLDiG~GtG~~~~~l~~~~~~~~~v~--~vDis~~~----~~~~i-~~~~~d~~~~~~~~~l~~~~~~~~~D  100 (188)
T TIGR00438        30 IKPG--DTVLDLGAAPGGWSQVAVEQVGGKGRVI--AVDLQPMK----PIENV-DFIRGDFTDEEVLNKIRERVGDDKVD  100 (188)
T ss_pred             cCCC--CEEEEecCCCCHHHHHHHHHhCCCceEE--EEeccccc----cCCCc-eEEEeeCCChhHHHHHHHHhCCCCcc
Confidence            3455  489999999999998887762   2343  46888754    11233 44444444332        4677899


Q ss_pred             eEEecCcCc---CCC-----ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          329 LVHASSGLD---VGG-----QPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       329 lV~s~~~L~---~~~-----~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +|++..+.+   .|.     ..+..+.++.++.++|||||++++..+
T Consensus       101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~  147 (188)
T TIGR00438       101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF  147 (188)
T ss_pred             EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence            999865422   111     112246899999999999999988653

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.03  E-value=3.4e-09  Score=104.95  Aligned_cols=114  Identities=16%  Similarity=0.170  Sum_probs=77.9

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCCceeec-ccCCCCCCCCccceEEecCcCcCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLFPLYLS-LDHRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli~~~~~-~~e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      .+|||+|||+|.++..+++.|..-+ .++|+++.+++.++++    ++...... .....++.++.||+|+++...    
T Consensus       161 ~~VLDvGcGsG~lai~aa~~g~~~V-~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~----  235 (288)
T TIGR00406       161 KNVIDVGCGSGILSIAALKLGAAKV-VGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA----  235 (288)
T ss_pred             CEEEEeCCChhHHHHHHHHcCCCeE-EEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH----
Confidence            5899999999999999888875322 3589999999887664    33111111 111234557899999997543    


Q ss_pred             ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675          341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL  390 (418)
Q Consensus       341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l  390 (418)
                        ..+..++.++.|+|||||++++++....   ..+.+.+.++.. |+.+
T Consensus       236 --~~l~~ll~~~~~~LkpgG~li~sgi~~~---~~~~v~~~~~~~-f~~~  279 (288)
T TIGR00406       236 --EVIKELYPQFSRLVKPGGWLILSGILET---QAQSVCDAYEQG-FTVV  279 (288)
T ss_pred             --HHHHHHHHHHHHHcCCCcEEEEEeCcHh---HHHHHHHHHHcc-Ccee
Confidence              2345789999999999999999887432   223355555554 6555

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.03  E-value=2.2e-09  Score=101.76  Aligned_cols=140  Identities=14%  Similarity=0.180  Sum_probs=80.8

Q ss_pred             cHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccce
Q 037675          250 NDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDL  329 (418)
Q Consensus       250 y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDl  329 (418)
                      .+.+|..+...+.  .-.|-|+|||.+.+|..+. .+++|.+  .|..+.        +- .+...++..+|.+++++|+
T Consensus        60 vd~iI~~l~~~~~--~~viaD~GCGdA~la~~~~-~~~~V~S--fDLva~--------n~-~Vtacdia~vPL~~~svDv  125 (219)
T PF05148_consen   60 VDVIIEWLKKRPK--SLVIADFGCGDAKLAKAVP-NKHKVHS--FDLVAP--------NP-RVTACDIANVPLEDESVDV  125 (219)
T ss_dssp             HHHHHHHHCTS-T--TS-EEEES-TT-HHHHH---S---EEE--EESS-S--------ST-TEEES-TTS-S--TT-EEE
T ss_pred             HHHHHHHHHhcCC--CEEEEECCCchHHHHHhcc-cCceEEE--eeccCC--------CC-CEEEecCccCcCCCCceeE
Confidence            4445555433332  2489999999999997764 4566655  455321        11 2444678899999999999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEE
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSA  409 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~A  409 (418)
                      |++...|...    +...++.|..|||||||.++|.+....-+.. +.+...++.+||+...-+.       .+..++..
T Consensus       126 ~VfcLSLMGT----n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~-~~F~~~~~~~GF~~~~~d~-------~n~~F~~f  193 (219)
T PF05148_consen  126 AVFCLSLMGT----NWPDFIREANRVLKPGGILKIAEVKSRFENV-KQFIKALKKLGFKLKSKDE-------SNKHFVLF  193 (219)
T ss_dssp             EEEES---SS-----HHHHHHHHHHHEEEEEEEEEEEEGGG-S-H-HHHHHHHHCTTEEEEEEE---------STTEEEE
T ss_pred             EEEEhhhhCC----CcHHHHHHHHheeccCcEEEEEEecccCcCH-HHHHHHHHHCCCeEEeccc-------CCCeEEEE
Confidence            9987666543    3448999999999999999998875443333 4588889999998774322       12345555


Q ss_pred             EEEcCC
Q 037675          410 VLQKPV  415 (418)
Q Consensus       410 i~qKP~  415 (418)
                      .++|..
T Consensus       194 ~F~K~~  199 (219)
T PF05148_consen  194 EFKKIR  199 (219)
T ss_dssp             EEEE-S
T ss_pred             EEEEcC
Confidence            666653

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.02  E-value=1.2e-09  Score=103.81  Aligned_cols=108  Identities=16%  Similarity=0.066  Sum_probs=85.5

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccceEEecCcCcC
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      +..-..++|.|+|||+|..+..|+++-...+..++|.|++|++.|+.|.. ..+..++...+- ++..+|+++++.+|+|
T Consensus        26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAvlqW  104 (257)
T COG4106          26 VPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAVLQW  104 (257)
T ss_pred             CCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhhhhh
Confidence            33345679999999999999999999322222469999999999999876 233446666663 6788999999999999


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEecccCc
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN  371 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~  371 (418)
                      ..+..   .+|..+.--|.|||.+.+-.+-+..
T Consensus       105 lpdH~---~ll~rL~~~L~Pgg~LAVQmPdN~d  134 (257)
T COG4106         105 LPDHP---ELLPRLVSQLAPGGVLAVQMPDNLD  134 (257)
T ss_pred             ccccH---HHHHHHHHhhCCCceEEEECCCccC
Confidence            87766   8899999999999999888775443

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.01  E-value=1.9e-09  Score=102.97  Aligned_cols=96  Identities=19%  Similarity=0.034  Sum_probs=75.0

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHH-HHcCCC-----------------ceeecccCCCCCC-CCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFI-AARGLF-----------------PLYLSLDHRFPFY-DNV  326 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a-~eRGli-----------------~~~~~~~e~LPf~-d~s  326 (418)
                      .+|||+|||.|..+..|+++|..|+  ++|+++..++.+ .++++.                 .++.++...++.. ...
T Consensus        39 ~rvL~~gCG~G~da~~LA~~G~~V~--avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~  116 (218)
T PRK13255         39 SRVLVPLCGKSLDMLWLAEQGHEVL--GVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD  116 (218)
T ss_pred             CeEEEeCCCChHhHHHHHhCCCeEE--EEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence            4899999999999999999998886  589999888754 455552                 2234555555433 258


Q ss_pred             cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEE
Q 037675          327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWL  364 (418)
Q Consensus       327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii  364 (418)
                      ||+|+-..++++.. ++..+.++..+.++|||||++++
T Consensus       117 fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        117 VDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             eeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence            99999999888874 55678999999999999997544

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.01  E-value=9.1e-09  Score=107.29  Aligned_cols=155  Identities=18%  Similarity=0.207  Sum_probs=99.0

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCC--CC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFP--FY  323 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LP--f~  323 (418)
                      .+...+...+|  .+|||+|||+|..+..++++.  ..+  +++|.++.+++.++++    |+ +.+..+++..++  +.
T Consensus       235 ~~~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~v--~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~  310 (427)
T PRK10901        235 LAATLLAPQNG--ERVLDACAAPGGKTAHILELAPQAQV--VALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWD  310 (427)
T ss_pred             HHHHHcCCCCC--CEEEEeCCCCChHHHHHHHHcCCCEE--EEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcc
Confidence            34445555555  489999999999999998873  344  3589999998776543    43 233445665554  34


Q ss_pred             CCccceEEecC------cCc------CCCChhH-------HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHH
Q 037675          324 DNVFDLVHASS------GLD------VGGQPEK-------LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIER  384 (418)
Q Consensus       324 d~sFDlV~s~~------~L~------~~~~~~~-------le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~  384 (418)
                      +++||.|++.-      ++.      +...+.+       .+.+|.++.++|||||+++++......++..+.+...+++
T Consensus       311 ~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~  390 (427)
T PRK10901        311 GQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR  390 (427)
T ss_pred             cCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence            67899999532      111      1112222       2468999999999999999887655555555566666665


Q ss_pred             c-CcEEEEE--------EEcccCCCCccceEEEEEEEc
Q 037675          385 F-GYKKLKW--------VVGEKGETGKSEVYLSAVLQK  413 (418)
Q Consensus       385 ~-Gfk~l~W--------~~~~k~d~~~~e~~l~Ai~qK  413 (418)
                      . +|+.+..        .+.+.  ....+.++.|.++|
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~P~--~~~~dGff~a~l~k  426 (427)
T PRK10901        391 HPDAELLDTGTPQQPGRQLLPG--EEDGDGFFYALLIK  426 (427)
T ss_pred             CCCCEEecCCCCCCCceEECCC--CCCCCCeEEEEEEE
Confidence            4 4554431        11111  12357789998887

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.99  E-value=1.2e-08  Score=95.36  Aligned_cols=123  Identities=20%  Similarity=0.284  Sum_probs=80.3

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCC-CCCCCCcc
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHR-FPFYDNVF  327 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~-LPf~d~sF  327 (418)
                      .+.++  .+|||+|||+|.++..++..   +..++  ++|.++.+++.++++    |+   +.+..++... ++..++.|
T Consensus        37 ~~~~~--~~vlDlG~GtG~~s~~~a~~~~~~~~v~--avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~  112 (198)
T PRK00377         37 RLRKG--DMILDIGCGTGSVTVEASLLVGETGKVY--AVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF  112 (198)
T ss_pred             CCCCc--CEEEEeCCcCCHHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence            34444  48999999999999887653   23443  579999999876543    42   2333444443 34445789


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcE--EEEEEE
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYK--KLKWVV  394 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk--~l~W~~  394 (418)
                      |.|++....      ..+..++.++.++|||||++++....   .+........+++.||.  .+.|.+
T Consensus       113 D~V~~~~~~------~~~~~~l~~~~~~LkpgG~lv~~~~~---~~~~~~~~~~l~~~g~~~~~~~~~~  172 (198)
T PRK00377        113 DRIFIGGGS------EKLKEIISASWEIIKKGGRIVIDAIL---LETVNNALSALENIGFNLEITEVII  172 (198)
T ss_pred             CEEEECCCc------ccHHHHHHHHHHHcCCCcEEEEEeec---HHHHHHHHHHHHHcCCCeEEEEEeh
Confidence            999985421      23458899999999999999774331   12223466667888873  344554

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.98  E-value=6.1e-09  Score=104.86  Aligned_cols=121  Identities=16%  Similarity=0.121  Sum_probs=86.4

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCC--ceeecccCCCCCCCCccceEEe
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLF--PLYLSLDHRFPFYDNVFDLVHA  332 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli--~~~~~~~e~LPf~d~sFDlV~s  332 (418)
                      .+++|  .+|||.|||+|+++..++..+..++  ++|+++.|++.++.+    |+.  .+..+++.++|+++++||+|++
T Consensus       179 ~~~~g--~~vLDp~cGtG~~lieaa~~~~~v~--g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~  254 (329)
T TIGR01177       179 RVTEG--DRVLDPFCGTGGFLIEAGLMGAKVI--GCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIAT  254 (329)
T ss_pred             CCCCc--CEEEECCCCCCHHHHHHHHhCCeEE--EEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEE
Confidence            34555  4899999999999888777777765  479999998765542    442  3456788899998999999999


Q ss_pred             cCcCc-----CCC-ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675          333 SSGLD-----VGG-QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL  390 (418)
Q Consensus       333 ~~~L~-----~~~-~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l  390 (418)
                      .--+.     ... ..+....++.++.|+|||||++++..+..  .+    +..+++..|| .+
T Consensus       255 dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~----~~~~~~~~g~-i~  311 (329)
T TIGR01177       255 DPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--ID----LESLAEDAFR-VV  311 (329)
T ss_pred             CCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CC----HHHHHhhcCc-ch
Confidence            62111     111 11234689999999999999997765532  12    4566888888 54

This family is found exclusively in the Archaea.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.98  E-value=2.8e-09  Score=100.39  Aligned_cols=97  Identities=22%  Similarity=0.227  Sum_probs=69.2

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCc
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNV  326 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~s  326 (418)
                      .+.+.++  .+|||+|||+|..++.|++.   +-.++  ++|.++.+++.+++    .|+   +.+..++........++
T Consensus        67 ~l~~~~~--~~VLDiG~GsG~~~~~la~~~~~~g~V~--~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~  142 (205)
T PRK13944         67 LIEPRPG--MKILEVGTGSGYQAAVCAEAIERRGKVY--TVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAP  142 (205)
T ss_pred             hcCCCCC--CEEEEECcCccHHHHHHHHhcCCCCEEE--EEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCC
Confidence            3344444  48999999999999888875   23443  57999999887664    243   24455665554445679


Q ss_pred             cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      ||+|++..++.+.         ..++.|+|||||++++..
T Consensus       143 fD~Ii~~~~~~~~---------~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        143 FDAIIVTAAASTI---------PSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             ccEEEEccCcchh---------hHHHHHhcCcCcEEEEEE
Confidence            9999998876543         237889999999997753

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.97  E-value=5.8e-09  Score=104.12  Aligned_cols=115  Identities=21%  Similarity=0.277  Sum_probs=76.4

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHH----HcCCCceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIA----ARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ  341 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~----eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~  341 (418)
                      .+|||+|||+|-++...++.|..-+ .++|+++..++.|+    ..|+-..+. ...........||+|+++-...    
T Consensus       163 ~~vLDvG~GSGILaiaA~klGA~~v-~a~DiDp~Av~~a~~N~~~N~~~~~~~-v~~~~~~~~~~~dlvvANI~~~----  236 (295)
T PF06325_consen  163 KRVLDVGCGSGILAIAAAKLGAKKV-VAIDIDPLAVEAARENAELNGVEDRIE-VSLSEDLVEGKFDLVVANILAD----  236 (295)
T ss_dssp             SEEEEES-TTSHHHHHHHHTTBSEE-EEEESSCHHHHHHHHHHHHTT-TTCEE-ESCTSCTCCS-EEEEEEES-HH----
T ss_pred             CEEEEeCCcHHHHHHHHHHcCCCeE-EEecCCHHHHHHHHHHHHHcCCCeeEE-EEEecccccccCCEEEECCCHH----
Confidence            4999999999999999998886432 35677776665554    456533221 1112234459999999975433    


Q ss_pred             hhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEE
Q 037675          342 PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       342 ~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W  392 (418)
                        -+..++.++.+.|||||++++++....+.+   .+.+.++. ||+.+..
T Consensus       237 --vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~---~v~~a~~~-g~~~~~~  281 (295)
T PF06325_consen  237 --VLLELAPDIASLLKPGGYLILSGILEEQED---EVIEAYKQ-GFELVEE  281 (295)
T ss_dssp             --HHHHHHHHCHHHEEEEEEEEEEEEEGGGHH---HHHHHHHT-TEEEEEE
T ss_pred             --HHHHHHHHHHHhhCCCCEEEEccccHHHHH---HHHHHHHC-CCEEEEE
Confidence              234778899999999999999988654332   34555666 9987754

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.94  E-value=1e-08  Score=103.15  Aligned_cols=120  Identities=16%  Similarity=0.092  Sum_probs=81.6

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-----------CceeecccCCCCCCCCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-----------FPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-----------i~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      .+|||+|||+|.++..|+++|..++  ++|+++.|++.++++..           +.+...+.   +..+++||+|+|..
T Consensus       146 ~~VLDlGcGtG~~a~~la~~g~~V~--gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl---~~l~~~fD~Vv~~~  220 (315)
T PLN02585        146 VTVCDAGCGTGSLAIPLALEGAIVS--ASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL---ESLSGKYDTVTCLD  220 (315)
T ss_pred             CEEEEecCCCCHHHHHHHHCCCEEE--EEECCHHHHHHHHHHHHhcccccccccceEEEEcch---hhcCCCcCEEEEcC
Confidence            4899999999999999999987664  58999999998877621           11122233   33368999999999


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc-------------Cch--------hHHHHHHHHHHHcCcEEEEE
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC-------------AND--------EKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~-------------~~e--------e~~~~~~~l~~~~Gfk~l~W  392 (418)
                      +++|+.+. ....++..+.+ +.+||.++...+..             .+.        ...+++.++++..||+...-
T Consensus       221 vL~H~p~~-~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~  297 (315)
T PLN02585        221 VLIHYPQD-KADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARR  297 (315)
T ss_pred             EEEecCHH-HHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEE
Confidence            99887543 34456666665 45666544322210             000        02467899999999997643

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.92  E-value=2.4e-08  Score=96.78  Aligned_cols=137  Identities=19%  Similarity=0.232  Sum_probs=87.8

Q ss_pred             CcHHHHHHHHc-cCCCCCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc---CC---CceeecccCC
Q 037675          249 KNDFLIDDVLA-LGSGGIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR---GL---FPLYLSLDHR  319 (418)
Q Consensus       249 ~y~~~I~~lL~-l~~g~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR---Gl---i~~~~~~~e~  319 (418)
                      .++.+++.++. +......+|||+|||+|.++..++...  ..+  +++|+++.+++.++++   +.   +.++.++...
T Consensus        92 ~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v--~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~  169 (275)
T PRK09328         92 ETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEV--TAVDISPEALAVARRNAKHGLGARVEFLQGDWFE  169 (275)
T ss_pred             CcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEE--EEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC
Confidence            44555555542 222223589999999999999998874  444  3579999999887764   21   2333443322


Q ss_pred             CCCCCCccceEEecCcCcC------C-----------------CChhHHHHHHHHhhccccCCcEEEEEecccCchhHHH
Q 037675          320 FPFYDNVFDLVHASSGLDV------G-----------------GQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKS  376 (418)
Q Consensus       320 LPf~d~sFDlV~s~~~L~~------~-----------------~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~  376 (418)
                       ++++++||+|+++--...      .                 ......+.++.++.++|||||++++...+.    ..+
T Consensus       170 -~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~----~~~  244 (275)
T PRK09328        170 -PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD----QGE  244 (275)
T ss_pred             -cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch----HHH
Confidence             334689999998521110      0                 011234578889999999999998854332    223


Q ss_pred             HHHHHHHHcCcEEEEE
Q 037675          377 ALTRLIERFGYKKLKW  392 (418)
Q Consensus       377 ~~~~l~~~~Gfk~l~W  392 (418)
                      .+..+++..||+.+.+
T Consensus       245 ~~~~~l~~~gf~~v~~  260 (275)
T PRK09328        245 AVRALLAAAGFADVET  260 (275)
T ss_pred             HHHHHHHhCCCceeEE
Confidence            4777888899987755

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.91  E-value=6.6e-09  Score=98.47  Aligned_cols=96  Identities=21%  Similarity=0.170  Sum_probs=69.7

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCcc
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVF  327 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sF  327 (418)
                      .+.+.+|  .+|||||||+|.+++.|++. +  ..++  ++|+++.+++.++++    |+  +.+..++....+..++.|
T Consensus        71 ~l~~~~g--~~VLdIG~GsG~~t~~la~~~~~~~~V~--~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~f  146 (212)
T PRK13942         71 LLDLKEG--MKVLEIGTGSGYHAAVVAEIVGKSGKVV--TIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPY  146 (212)
T ss_pred             HcCCCCc--CEEEEECCcccHHHHHHHHhcCCCCEEE--EEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCc
Confidence            3455655  48999999999999888876 2  3443  479999999877663    33  344556666555567899


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      |+|++...+...         ..++.+.|||||.+++.
T Consensus       147 D~I~~~~~~~~~---------~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        147 DRIYVTAAGPDI---------PKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             CEEEECCCcccc---------hHHHHHhhCCCcEEEEE
Confidence            999998765432         23667789999998774

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.91  E-value=2.3e-08  Score=104.52  Aligned_cols=154  Identities=17%  Similarity=0.222  Sum_probs=101.7

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCC---
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFP---  321 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LP---  321 (418)
                      +...+...+|  .+|||+|||+|+.+..+++. +  ..+  +++|+++.+++.+++    .|+  +.+..++...++   
T Consensus       244 ~~~~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v--~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~  319 (434)
T PRK14901        244 VAPLLDPQPG--EVILDACAAPGGKTTHIAELMGDQGEI--WAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK  319 (434)
T ss_pred             HHHHhCCCCc--CEEEEeCCCCchhHHHHHHHhCCCceE--EEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc
Confidence            3344555555  48999999999999988875 2  234  357999998876654    354  233445666665   


Q ss_pred             -CCCCccceEEec------CcCcCCCC------hhH-------HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHH
Q 037675          322 -FYDNVFDLVHAS------SGLDVGGQ------PEK-------LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRL  381 (418)
Q Consensus       322 -f~d~sFDlV~s~------~~L~~~~~------~~~-------le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l  381 (418)
                       +.+++||.|++.      +++....+      +.+       ...+|.++.++|||||+++.++.....+|..+.+..+
T Consensus       320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~  399 (434)
T PRK14901        320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQF  399 (434)
T ss_pred             ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHH
Confidence             557899999963      23332111      111       2478999999999999998887666666666677777


Q ss_pred             HHHc-CcEEEEEEEccc-CCC--CccceEEEEEEEcC
Q 037675          382 IERF-GYKKLKWVVGEK-GET--GKSEVYLSAVLQKP  414 (418)
Q Consensus       382 ~~~~-Gfk~l~W~~~~k-~d~--~~~e~~l~Ai~qKP  414 (418)
                      +++. +|+....   .. .-+  ...+.++.|.++|.
T Consensus       400 l~~~~~~~~~~~---~~~~~P~~~~~dGfF~a~l~k~  433 (434)
T PRK14901        400 LARHPDWKLEPP---KQKIWPHRQDGDGFFMAVLRKK  433 (434)
T ss_pred             HHhCCCcEecCC---CCccCCCCCCCCcEEEEEEEeC
Confidence            7765 4553211   01 111  24588999999985

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.89  E-value=7.6e-09  Score=97.84  Aligned_cols=98  Identities=21%  Similarity=0.192  Sum_probs=68.9

Q ss_pred             HHHHccCCCCCCeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCC
Q 037675          255 DDVLALGSGGIRIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDN  325 (418)
Q Consensus       255 ~~lL~l~~g~~r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~  325 (418)
                      .+.+.+.++  .+|||+|||+|.+++.|++..   ..++  ++|.++.+++.|+++    |+  +.+..++........+
T Consensus        70 ~~~l~~~~~--~~VLDiG~GsG~~a~~la~~~~~~g~V~--~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~  145 (215)
T TIGR00080        70 TELLELKPG--MKVLEIGTGSGYQAAVLAEIVGRDGLVV--SIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA  145 (215)
T ss_pred             HHHhCCCCc--CEEEEECCCccHHHHHHHHHhCCCCEEE--EEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence            334456655  489999999999999998862   2243  579999999877653    43  2344555554433457


Q ss_pred             ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      .||+|++......         +..++.+.|||||++++.
T Consensus       146 ~fD~Ii~~~~~~~---------~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       146 PYDRIYVTAAGPK---------IPEALIDQLKEGGILVMP  176 (215)
T ss_pred             CCCEEEEcCCccc---------ccHHHHHhcCcCcEEEEE
Confidence            8999998765433         334678899999999774

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK14967 putative methyltransferase; Provisional

Probab=98.89  E-value=5.4e-08  Score=92.52  Aligned_cols=117  Identities=17%  Similarity=0.126  Sum_probs=75.8

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHH----cCC-CceeecccCCCCCCCCccceEEecCcCcCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAA----RGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~e----RGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      .+|||+|||+|.++..+++.+. .+  +++|+++.+++.+++    .++ +.++.++... .+++++||+|+++--+..-
T Consensus        38 ~~vLDlGcG~G~~~~~la~~~~~~v--~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~  114 (223)
T PRK14967         38 RRVLDLCTGSGALAVAAAAAGAGSV--TAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA  114 (223)
T ss_pred             CeEEEecCCHHHHHHHHHHcCCCeE--EEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence            4899999999999999988764 44  357999998886655    243 2233344433 3467899999997322211


Q ss_pred             C------------------ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcE
Q 037675          340 G------------------QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYK  388 (418)
Q Consensus       340 ~------------------~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk  388 (418)
                      .                  ....++.++.++.++|||||.+++.......  . ..+..+++..||.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~--~-~~~~~~l~~~g~~  178 (223)
T PRK14967        115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG--V-ERTLTRLSEAGLD  178 (223)
T ss_pred             CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC--H-HHHHHHHHHCCCC
Confidence            0                  0112567889999999999999875432211  1 1244445556664

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.88  E-value=9.9e-09  Score=105.66  Aligned_cols=112  Identities=12%  Similarity=0.097  Sum_probs=76.0

Q ss_pred             CcHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc----CC-----Cceeeccc
Q 037675          249 KNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR----GL-----FPLYLSLD  317 (418)
Q Consensus       249 ~y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR----Gl-----i~~~~~~~  317 (418)
                      ++.++++. ++...  ..+|||+|||+|.++..+++++  ..++  ++|.++.+++.+++.    +.     +.++.+++
T Consensus       216 GtrllL~~-lp~~~--~~~VLDLGCGtGvi~i~la~~~P~~~V~--~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~  290 (378)
T PRK15001        216 GARFFMQH-LPENL--EGEIVDLGCGNGVIGLTLLDKNPQAKVV--FVDESPMAVASSRLNVETNMPEALDRCEFMINNA  290 (378)
T ss_pred             HHHHHHHh-CCccc--CCeEEEEeccccHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHHHHcCcccCceEEEEEccc
Confidence            34555553 23222  2489999999999999999874  4443  579999999887653    21     12333333


Q ss_pred             CCCCCCCCccceEEecCcCcCC--CChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          318 HRFPFYDNVFDLVHASSGLDVG--GQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       318 e~LPf~d~sFDlV~s~~~L~~~--~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      .. .+++.+||+|+|+--+|..  ........++.++.|+|||||.+++..
T Consensus       291 l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        291 LS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             cc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            22 1345689999998666532  222345688999999999999998875

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.88  E-value=1.2e-08  Score=80.75  Aligned_cols=95  Identities=22%  Similarity=0.322  Sum_probs=69.2

Q ss_pred             eEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHH---cCC---CceeecccCCCCC-CCCccceEEecCcCcC
Q 037675          267 IGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAA---RGL---FPLYLSLDHRFPF-YDNVFDLVHASSGLDV  338 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~e---RGl---i~~~~~~~e~LPf-~d~sFDlV~s~~~L~~  338 (418)
                      +++|+|||+|.++..+++. +..+.  ++|.++.+++.+.+   .+.   +.++..+....+. ..+.||+|++..++++
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~   78 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVT--GVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH   78 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEE--EEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence            4899999999999999873 44443  47998888776651   111   2334444444443 5678999999998887


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      +  ......++..+.+.|||||++++.
T Consensus        79 ~--~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          79 L--VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            3  234568999999999999999775

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.87  E-value=4.8e-08  Score=101.81  Aligned_cols=156  Identities=13%  Similarity=0.125  Sum_probs=97.7

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc-C-cEEEEeccCCCHHhHHHHHHc----CCC-ce--eecccCCCCC-
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER-N-VTVITNTLNVDAPYSEFIAAR----GLF-PL--YLSLDHRFPF-  322 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-g-V~vv~~alD~s~~~l~~a~eR----Gli-~~--~~~~~e~LPf-  322 (418)
                      .+...+...+|  .+|||+|||+|+.+..+++. + ..+  +++|+++.+++.++++    |+- .+  ..++....++ 
T Consensus       229 ~~~~~L~~~~g--~~VLDlcag~G~kt~~la~~~~~~~v--~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~  304 (426)
T TIGR00563       229 WVATWLAPQNE--ETILDACAAPGGKTTHILELAPQAQV--VALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW  304 (426)
T ss_pred             HHHHHhCCCCC--CeEEEeCCCccHHHHHHHHHcCCCeE--EEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence            34445555555  48999999999999998875 3 344  3579999988766543    542 11  1234433443 


Q ss_pred             -CCCccceEEec------CcCcCCC------ChhH-------HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHH
Q 037675          323 -YDNVFDLVHAS------SGLDVGG------QPEK-------LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLI  382 (418)
Q Consensus       323 -~d~sFDlV~s~------~~L~~~~------~~~~-------le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~  382 (418)
                       .+++||.|++.      ++++...      .+.+       -..+|.++.|+|||||+++++......+|.++.+..++
T Consensus       305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l  384 (426)
T TIGR00563       305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFL  384 (426)
T ss_pred             ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHH
Confidence             56789999952      3443221      1111       24789999999999999999877665556556666777


Q ss_pred             HHc-CcEEEEEEEc-c--cC-----CC--CccceEEEEEEEc
Q 037675          383 ERF-GYKKLKWVVG-E--KG-----ET--GKSEVYLSAVLQK  413 (418)
Q Consensus       383 ~~~-Gfk~l~W~~~-~--k~-----d~--~~~e~~l~Ai~qK  413 (418)
                      ++. +|. +.|.-. .  ..     -+  ...+.++.|.++|
T Consensus       385 ~~~~~~~-~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k  425 (426)
T TIGR00563       385 QEHPDFP-FEKTGTPEQVRDGGLQILPHAEEGDGFFYAKLIK  425 (426)
T ss_pred             HhCCCCe-eccCCCccccCCCcEEECCCCCCCCCeEEEEEEe
Confidence            665 343 222100 0  00     01  2457889999887

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.87  E-value=3.2e-08  Score=102.88  Aligned_cols=155  Identities=17%  Similarity=0.203  Sum_probs=96.7

Q ss_pred             cCCcHHHHHHHHc-cCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC-CceeecccC
Q 037675          247 RGKNDFLIDDVLA-LGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDH  318 (418)
Q Consensus       247 ~~~y~~~I~~lL~-l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e  318 (418)
                      ...++.+++.++. +.++  .+|||+|||+|.++..++..  +..+  +++|+|+.+++.++++    +. +.+..++..
T Consensus       235 RpeTE~LVe~aL~~l~~~--~rVLDLGcGSG~IaiaLA~~~p~a~V--tAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~  310 (423)
T PRK14966        235 RPETEHLVEAVLARLPEN--GRVWDLGTGSGAVAVTVALERPDAFV--RASDISPPALETARKNAADLGARVEFAHGSWF  310 (423)
T ss_pred             CccHHHHHHHhhhccCCC--CEEEEEeChhhHHHHHHHHhCCCCEE--EEEECCHHHHHHHHHHHHHcCCcEEEEEcchh
Confidence            3445666666654 3333  48999999999999988865  3444  3579999999877653    32 344455543


Q ss_pred             CCCCC-CCccceEEecCcCcCC----------------------CChhHHHHHHHHhhccccCCcEEEEEecccCchhHH
Q 037675          319 RFPFY-DNVFDLVHASSGLDVG----------------------GQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKK  375 (418)
Q Consensus       319 ~LPf~-d~sFDlV~s~~~L~~~----------------------~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~  375 (418)
                      ...++ .++||+|+|+-=....                      ......+.++.++.+.|+|||.+++...+.+.+   
T Consensus       311 e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e---  387 (423)
T PRK14966        311 DTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGA---  387 (423)
T ss_pred             ccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHH---
Confidence            33332 4589999995311100                      011124477788889999999988765543333   


Q ss_pred             HHHHHHHHHcCcEEEEEEEcccCCCCccceEEEEEEEc
Q 037675          376 SALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQK  413 (418)
Q Consensus       376 ~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qK  413 (418)
                       .+.++++..||+.+.-    ..|-...+.++.+.+.|
T Consensus       388 -~V~~ll~~~Gf~~v~v----~kDl~G~dR~v~~~~~~  420 (423)
T PRK14966        388 -AVRGVLAENGFSGVET----LPDLAGLDRVTLGKYMK  420 (423)
T ss_pred             -HHHHHHHHCCCcEEEE----EEcCCCCcEEEEEEEhh
Confidence             3677788889976643    22322345566655555

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.86  E-value=8.9e-09  Score=106.14  Aligned_cols=98  Identities=19%  Similarity=0.170  Sum_probs=70.5

Q ss_pred             CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHH----HcCCC--ceeecccCCC--CCCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIA----ARGLF--PLYLSLDHRF--PFYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~----eRGli--~~~~~~~e~L--Pf~d~sFDlV~s~~~  335 (418)
                      ..+||||||+|.++..++.+.  ..++  ++|+++.+++.+.    ++|+.  .++.+++..+  +++++++|.|++...
T Consensus       124 p~vLEIGcGsG~~ll~lA~~~P~~~~i--GIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP  201 (390)
T PRK14121        124 KILIEIGFGSGRHLLYQAKNNPNKLFI--GIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP  201 (390)
T ss_pred             CeEEEEcCcccHHHHHHHHhCCCCCEE--EEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence            489999999999999999874  4443  5899988876553    44553  3345666544  578999999998654


Q ss_pred             CcCCCChh----HHHHHHHHhhccccCCcEEEEEe
Q 037675          336 LDVGGQPE----KLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       336 L~~~~~~~----~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      . +|....    -.+.++.++.|+|||||.+.+..
T Consensus       202 d-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T  235 (390)
T PRK14121        202 V-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT  235 (390)
T ss_pred             C-CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence            3 332211    12478999999999999997753

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.85  E-value=5.9e-08  Score=95.84  Aligned_cols=119  Identities=15%  Similarity=0.176  Sum_probs=79.9

Q ss_pred             CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecC--
Q 037675          266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASS--  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~--  334 (418)
                      .+|||+|||+|.++..++...  ..+  +++|+++.+++.|+++    ++   +.++.++... +++++.||+|+++-  
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v--~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPy  192 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEV--IAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPY  192 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEE--EEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCC
Confidence            489999999999999999863  444  3589999999877653    33   2344444322 34455899999951  


Q ss_pred             -----------cCcCCC---------ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHH-HcCcEEEE
Q 037675          335 -----------GLDVGG---------QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIE-RFGYKKLK  391 (418)
Q Consensus       335 -----------~L~~~~---------~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~-~~Gfk~l~  391 (418)
                                 ++.+..         .....+.++.++.+.|+|||++++...+.+.+.    +.+++. ..||..+.
T Consensus       193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~----~~~~~~~~~~~~~~~  266 (284)
T TIGR00536       193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKS----LKELLRIKFTWYDVE  266 (284)
T ss_pred             CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHH----HHHHHHhcCCCceeE
Confidence                       111111         012456889999999999999988766554443    455555 46787664

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PLN03075 nicotianamine synthase; Provisional

Probab=98.83  E-value=2.9e-08  Score=99.08  Aligned_cols=100  Identities=11%  Similarity=0.072  Sum_probs=69.6

Q ss_pred             CCCeEEEECCccChHHHH-Hh-hc--CcEEEEeccCCCHHhHHHHHH-----cCC---CceeecccCCCCCCCCccceEE
Q 037675          264 GIRIGFDIGGGSGTFAAR-MA-ER--NVTVITNTLNVDAPYSEFIAA-----RGL---FPLYLSLDHRFPFYDNVFDLVH  331 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~-La-~~--gV~vv~~alD~s~~~l~~a~e-----RGl---i~~~~~~~e~LPf~d~sFDlV~  331 (418)
                      ..++|+|||||.|.+++. ++ ..  +..++  ++|.++.+++.|++     .|+   +.+..+++..++-..+.||+|+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~--giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF  200 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFH--NFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF  200 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEE--EEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence            346899999998855433 33 23  23343  47999998887654     233   3444555555433357899999


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +. ++++|... ..+.++..+.|.|||||++++...
T Consensus       201 ~~-ALi~~dk~-~k~~vL~~l~~~LkPGG~Lvlr~~  234 (296)
T PLN03075        201 LA-ALVGMDKE-EKVKVIEHLGKHMAPGALLMLRSA  234 (296)
T ss_pred             Ee-cccccccc-cHHHHHHHHHHhcCCCcEEEEecc
Confidence            99 88888422 234999999999999999988763

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.82  E-value=1.6e-07  Score=92.02  Aligned_cols=126  Identities=13%  Similarity=0.117  Sum_probs=82.4

Q ss_pred             HHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCCC--ceeecccCCCCCCCCc
Q 037675          256 DVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGLF--PLYLSLDHRFPFYDNV  326 (418)
Q Consensus       256 ~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGli--~~~~~~~e~LPf~d~s  326 (418)
                      .++...+|  .+|||+|||+|+.+..+++.   .-.+  +++|+++.+++.+++    .|+.  .+...+...++...+.
T Consensus        65 ~~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v--~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~  140 (264)
T TIGR00446        65 LALEPDPP--ERVLDMAAAPGGKTTQISALMKNEGAI--VANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPK  140 (264)
T ss_pred             HHhCCCCc--CEEEEECCCchHHHHHHHHHcCCCCEE--EEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccC
Confidence            34455555  48999999999999888774   1233  357999998876544    3542  3344566666666677


Q ss_pred             cceEEec------CcCcCCC------ChhH-------HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHc
Q 037675          327 FDLVHAS------SGLDVGG------QPEK-------LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERF  385 (418)
Q Consensus       327 FDlV~s~------~~L~~~~------~~~~-------le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~  385 (418)
                      ||.|++.      +++..-.      .+..       ...+|.++.+.|||||+++.+......+|.++.+..+++..
T Consensus       141 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~  218 (264)
T TIGR00446       141 FDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKR  218 (264)
T ss_pred             CCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhC
Confidence            9999963      2222110      1111       23589999999999999988765544555555566666653

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.82  E-value=4.8e-08  Score=96.76  Aligned_cols=117  Identities=15%  Similarity=0.161  Sum_probs=78.3

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecC--
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASS--  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~--  334 (418)
                      .+|||+|||+|.++..++++  +..++  ++|+++.+++.|+++    |+   +.++.++... ++++++||+|+++=  
T Consensus       123 ~~vLDlG~GsG~i~~~la~~~~~~~v~--avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy  199 (284)
T TIGR03533       123 KRILDLCTGSGCIAIACAYAFPEAEVD--AVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY  199 (284)
T ss_pred             CEEEEEeCchhHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence            58999999999999999986  34553  589999999877653    54   2344454422 23566899999851  


Q ss_pred             ----cC-------cCCC---------ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675          335 ----GL-------DVGG---------QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL  390 (418)
Q Consensus       335 ----~L-------~~~~---------~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l  390 (418)
                          .+       ++..         .....+.++.++.++|||||++++...... +    .+..++...||.-+
T Consensus       200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~----~v~~~~~~~~~~~~  270 (284)
T TIGR03533       200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-E----ALEEAYPDVPFTWL  270 (284)
T ss_pred             CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-H----HHHHHHHhCCCcee
Confidence                11       1100         011235789999999999999987655422 2    36666777777543

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.81  E-value=1.3e-07  Score=99.05  Aligned_cols=159  Identities=14%  Similarity=0.201  Sum_probs=98.6

Q ss_pred             HHHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCC-
Q 037675          252 FLIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFP-  321 (418)
Q Consensus       252 ~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LP-  321 (418)
                      ..+...+.+.+|  .+|||+|||+|..+..+++.   +..+  +++|+++.+++.+++    .|+  +.+..++...++ 
T Consensus       240 ~lv~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v--~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~  315 (444)
T PRK14902        240 MLVAPALDPKGG--DTVLDACAAPGGKTTHIAELLKNTGKV--VALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE  315 (444)
T ss_pred             HHHHHHhCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEE--EEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc
Confidence            345555556555  48999999999999998875   2334  357999998876654    354  234455655543 


Q ss_pred             CCCCccceEEecC------cCcC------CCChhHH-------HHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHH
Q 037675          322 FYDNVFDLVHASS------GLDV------GGQPEKL-------EFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLI  382 (418)
Q Consensus       322 f~d~sFDlV~s~~------~L~~------~~~~~~l-------e~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~  382 (418)
                      ...++||+|++.-      .+.+      ...+.++       ..+|.++.++|||||.++.+......++.......++
T Consensus       316 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l  395 (444)
T PRK14902        316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFL  395 (444)
T ss_pred             hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHH
Confidence            1237899999742      1111      1111222       3579999999999999987765444445455566667


Q ss_pred             HHc-CcEEEEEEEc----------c---cCCC--CccceEEEEEEEcC
Q 037675          383 ERF-GYKKLKWVVG----------E---KGET--GKSEVYLSAVLQKP  414 (418)
Q Consensus       383 ~~~-Gfk~l~W~~~----------~---k~d~--~~~e~~l~Ai~qKP  414 (418)
                      ++. .|+.+.....          .   +..+  ...+.++.|+++|.
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~a~l~k~  443 (444)
T PRK14902        396 EEHPEFELVPLQHEKPDELVYEVKDGYLQILPNDYGTDGFFIAKLRKK  443 (444)
T ss_pred             HhCCCcEEecccccccccccccccCCeEEECCCCCCCCCeEEEEEEEC
Confidence            765 3665542110          0   0012  24588999999884

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.80  E-value=1.5e-07  Score=98.64  Aligned_cols=156  Identities=17%  Similarity=0.134  Sum_probs=97.7

Q ss_pred             HHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCCCCCC
Q 037675          255 DDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFPFYDN  325 (418)
Q Consensus       255 ~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LPf~d~  325 (418)
                      ..++...+|  .+|||+|||+|+.+..+++.   +-.+  +++|+++.+++.+++    .|+  +.+..+++..++ +++
T Consensus       243 ~~~l~~~~g--~~VLDlgaG~G~kt~~la~~~~~~~~V--~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~  317 (445)
T PRK14904        243 CLLLNPQPG--STVLDLCAAPGGKSTFMAELMQNRGQI--TAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEE  317 (445)
T ss_pred             HHhcCCCCC--CEEEEECCCCCHHHHHHHHHhCCCcEE--EEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCC
Confidence            334445555  48999999999998888764   2344  357999999876654    354  234445666664 567


Q ss_pred             ccceEEec------CcCcC-----C-CChhHH-------HHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHc-
Q 037675          326 VFDLVHAS------SGLDV-----G-GQPEKL-------EFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERF-  385 (418)
Q Consensus       326 sFDlV~s~------~~L~~-----~-~~~~~l-------e~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~-  385 (418)
                      +||.|++.      +++..     | ..+.++       ..+|.++.++|||||+++++...-..+|.++....+++.. 
T Consensus       318 ~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~  397 (445)
T PRK14904        318 QPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHP  397 (445)
T ss_pred             CCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence            89999952      22210     1 112222       3689999999999999999876555555555666777664 


Q ss_pred             CcEEEEEEEc--------c-cC-----CCC---ccceEEEEEEEcCC
Q 037675          386 GYKKLKWVVG--------E-KG-----ETG---KSEVYLSAVLQKPV  415 (418)
Q Consensus       386 Gfk~l~W~~~--------~-k~-----d~~---~~e~~l~Ai~qKP~  415 (418)
                      +|+.+.....        . ..     -+.   ..+.++.|.++|..
T Consensus       398 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~dGfF~a~l~k~~  444 (445)
T PRK14904        398 EFSAEPSPGSLPEPFHEVAHPKGAILTLPGEHEGFDGGFAQRLRKNA  444 (445)
T ss_pred             CCEEeccccccccccccccCCCCcEEECCCCCCCCCcEEEEEEEecC
Confidence            4543321100        0 00     011   23788999999864

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.80  E-value=3.3e-08  Score=92.02  Aligned_cols=122  Identities=21%  Similarity=0.339  Sum_probs=86.1

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHH----HHcCC---CceeecccCCCCCCCCccceEEecCcCc-
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFI----AARGL---FPLYLSLDHRFPFYDNVFDLVHASSGLD-  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a----~eRGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~-  337 (418)
                      .+|||+|||.|.+...|++.+...--.++|.|+..++.|    ..+|.   +.+.+.++..=.|.++.||+|+--+++. 
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA  148 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA  148 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence            389999999999999999987554113589999877654    33454   2344444444367889999999765544 


Q ss_pred             ----CCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          338 ----VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       338 ----~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                          .......+..++.-+.+.|+|||+|+|..-.+..+|    +...++..||..++
T Consensus       149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dE----Lv~~f~~~~f~~~~  202 (227)
T KOG1271|consen  149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDE----LVEEFENFNFEYLS  202 (227)
T ss_pred             eecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHH----HHHHHhcCCeEEEE
Confidence                333333345788999999999999999877666555    45557777776554

>TIGR03438 probable methyltransferase

Probab=98.78  E-value=3.4e-08  Score=98.43  Aligned_cols=99  Identities=13%  Similarity=0.048  Sum_probs=70.4

Q ss_pred             CeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc------CC-CceeecccCC-CCCCCCc----cceE
Q 037675          266 RIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR------GL-FPLYLSLDHR-FPFYDNV----FDLV  330 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR------Gl-i~~~~~~~e~-LPf~d~s----FDlV  330 (418)
                      .+|||+|||+|..+..|++.   ++.++  ++|+|+.|++.+.++      ++ +..+.++..+ ++++...    ..++
T Consensus        65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~--~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~  142 (301)
T TIGR03438        65 CELVELGSGSSRKTRLLLDALRQPARYV--PIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF  142 (301)
T ss_pred             CeEEecCCCcchhHHHHHHhhccCCeEE--EEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence            48999999999999999877   45554  589999999887664      12 1223455543 4444432    3344


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ++...+++.. +++...+|.++.++|+|||.|+|..-
T Consensus       143 ~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig~d  178 (301)
T TIGR03438       143 FPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIGVD  178 (301)
T ss_pred             EecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            4456777764 55567899999999999999987654

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.75  E-value=1.8e-08  Score=84.89  Aligned_cols=98  Identities=23%  Similarity=0.352  Sum_probs=70.2

Q ss_pred             eEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCC--CCCCccceEEecCcC
Q 037675          267 IGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFP--FYDNVFDLVHASSGL  336 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LP--f~d~sFDlV~s~~~L  336 (418)
                      +|||+|||+|.++..+++.+ ..+.  ++|+++..++.++.+    ++   +.++.++...++  +.++.||+|+++--+
T Consensus         3 ~vlD~~~G~G~~~~~~~~~~~~~~~--gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    3 RVLDPGCGSGTFLLAALRRGAARVT--GVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             EEEEETSTTCHHHHHHHHHCTCEEE--EEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             EEEEcCcchHHHHHHHHHHCCCeEE--EEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            79999999999999999888 5554  589999888776653    22   345556655554  778999999997444


Q ss_pred             cCC-C----ChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          337 DVG-G----QPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       337 ~~~-~----~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      ... .    .......++.++.|+|||||.+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            321 1    11234588999999999999997654

...

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.75  E-value=6.2e-08  Score=90.14  Aligned_cols=99  Identities=19%  Similarity=0.241  Sum_probs=65.8

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCC-CCCCCCccc
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHR-FPFYDNVFD  328 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~-LPf~d~sFD  328 (418)
                      +.+.++  .+|||+|||+|.++..+++.  +..++  ++|.++.+++.+++    .++  +.++.+++.. ++.....+|
T Consensus        36 l~~~~~--~~VLDiG~G~G~~~~~la~~~~~~~V~--~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d  111 (196)
T PRK07402         36 LRLEPD--SVLWDIGAGTGTIPVEAGLLCPKGRVI--AIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPD  111 (196)
T ss_pred             cCCCCC--CEEEEeCCCCCHHHHHHHHHCCCCEEE--EEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCC
Confidence            344444  48999999999999888764  34443  57999999987655    343  2334444432 332233467


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .++...    .   ..++.++.++.|+|||||++++...
T Consensus       112 ~v~~~~----~---~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        112 RVCIEG----G---RPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             EEEEEC----C---cCHHHHHHHHHHhcCCCeEEEEEee
Confidence            765532    1   2345899999999999999988765

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.74  E-value=9.4e-08  Score=93.14  Aligned_cols=137  Identities=19%  Similarity=0.269  Sum_probs=88.1

Q ss_pred             cHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccc
Q 037675          250 NDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFD  328 (418)
Q Consensus       250 y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFD  328 (418)
                      .+.+|.. |...++. -.|-|+|||-+.+|.  ..+ .|..+    |+.+.     .+    .+..-++.++|.+|+|.|
T Consensus       168 ld~ii~~-ik~r~~~-~vIaD~GCGEakiA~--~~~~kV~Sf----DL~a~-----~~----~V~~cDm~~vPl~d~svD  230 (325)
T KOG3045|consen  168 LDVIIRK-IKRRPKN-IVIADFGCGEAKIAS--SERHKVHSF----DLVAV-----NE----RVIACDMRNVPLEDESVD  230 (325)
T ss_pred             HHHHHHH-HHhCcCc-eEEEecccchhhhhh--ccccceeee----eeecC-----CC----ceeeccccCCcCccCccc
Confidence            3334443 2333443 379999999998775  222 35543    54321     11    223346778999999999


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEE
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLS  408 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~  408 (418)
                      ++++...|..    .++..++.|++|||||||.+||......-.+.. .+.+.+..+||...+-.+       .+..+..
T Consensus       231 vaV~CLSLMg----tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~-~f~r~l~~lGF~~~~~d~-------~n~~F~l  298 (325)
T KOG3045|consen  231 VAVFCLSLMG----TNLADFIKEANRILKPGGLLYIAEVKSRFSDVK-GFVRALTKLGFDVKHKDV-------SNKYFTL  298 (325)
T ss_pred             EEEeeHhhhc----ccHHHHHHHHHHHhccCceEEEEehhhhcccHH-HHHHHHHHcCCeeeehhh-------hcceEEE
Confidence            9997544433    234589999999999999999987644333333 388889999998654322       2344555


Q ss_pred             EEEEcCC
Q 037675          409 AVLQKPV  415 (418)
Q Consensus       409 Ai~qKP~  415 (418)
                      -.++|+.
T Consensus       299 fefkK~~  305 (325)
T KOG3045|consen  299 FEFKKTP  305 (325)
T ss_pred             EEEecCC
Confidence            6677754

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.73  E-value=8.1e-08  Score=90.35  Aligned_cols=98  Identities=20%  Similarity=0.089  Sum_probs=67.0

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccceE
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFDLV  330 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFDlV  330 (418)
                      .+.+.++  .+|||+|||+|.++..|++..-.+  .++|.++.+++.++++    |+  +.+..++........+.||+|
T Consensus        73 ~l~~~~~--~~VLeiG~GsG~~t~~la~~~~~v--~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  148 (212)
T PRK00312         73 LLELKPG--DRVLEIGTGSGYQAAVLAHLVRRV--FSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRI  148 (212)
T ss_pred             hcCCCCC--CEEEEECCCccHHHHHHHHHhCEE--EEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEE
Confidence            3344444  589999999999999888774344  3579999998877653    43  234445443221234789999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ++...+++.         ..++.+.|||||.+++.-.
T Consensus       149 ~~~~~~~~~---------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        149 LVTAAAPEI---------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             EEccCchhh---------hHHHHHhcCCCcEEEEEEc
Confidence            997765433         3467899999999977543

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.73  E-value=1.8e-08  Score=96.64  Aligned_cols=137  Identities=18%  Similarity=0.234  Sum_probs=101.2

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc---CCC-ceeecccCCCCCCCCccc
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR---GLF-PLYLSLDHRFPFYDNVFD  328 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR---Gli-~~~~~~~e~LPf~d~sFD  328 (418)
                      +.+.+.++++ ...+++|||||.|..+..|...||.-+ +-+|.|..|++.++..   ++. ..+.++-|.|||.+++||
T Consensus        62 laDrvfD~kk-~fp~a~diGcs~G~v~rhl~~e~vekl-i~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~D  139 (325)
T KOG2940|consen   62 LADRVFDCKK-SFPTAFDIGCSLGAVKRHLRGEGVEKL-IMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVD  139 (325)
T ss_pred             HHHHHHHHhh-hCcceeecccchhhhhHHHHhcchhhe-eeeecchHHHHHhhccCCCceEEEEEecchhcccccccchh
Confidence            3444555554 356899999999999999999987533 2379999999987764   332 223478999999999999


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc----------hh---------------HHHHHHHHHH
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN----------DE---------------KKSALTRLIE  383 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~----------ee---------------~~~~~~~l~~  383 (418)
                      +|+++..+||..+..   ..+..+.-+|||+|.|+-+.+....          .+               ....+-.++.
T Consensus       140 LiisSlslHW~NdLP---g~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~  216 (325)
T KOG2940|consen  140 LIISSLSLHWTNDLP---GSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLT  216 (325)
T ss_pred             hhhhhhhhhhhccCc---hHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHh
Confidence            999999999875544   7889999999999998665542211          00               0134677899


Q ss_pred             HcCcEEEEEEE
Q 037675          384 RFGYKKLKWVV  394 (418)
Q Consensus       384 ~~Gfk~l~W~~  394 (418)
                      ++||.-+..++
T Consensus       217 rAGF~m~tvDt  227 (325)
T KOG2940|consen  217 RAGFSMLTVDT  227 (325)
T ss_pred             hcCcccceecc
Confidence            99998775444

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.73  E-value=1.6e-07  Score=94.18  Aligned_cols=116  Identities=15%  Similarity=0.135  Sum_probs=76.1

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecC--
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASS--  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~--  334 (418)
                      .+|||+|||+|.++..++..  +..++  ++|+++.+++.|+++    |+   +.++.++... ++++++||+|+++-  
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~--avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPy  211 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVD--AVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPY  211 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEE--EEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCC
Confidence            58999999999999999876  34443  589999999876553    43   3445554422 23467899999861  


Q ss_pred             ----c---C----cCCCC---------hhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEE
Q 037675          335 ----G---L----DVGGQ---------PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKK  389 (418)
Q Consensus       335 ----~---L----~~~~~---------~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~  389 (418)
                          .   +    ++...         ....+.++.++.++|||||++++..... .    +.+..++...+|.-
T Consensus       212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~----~~~~~~~~~~~~~~  281 (307)
T PRK11805        212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-R----VHLEEAYPDVPFTW  281 (307)
T ss_pred             CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-H----HHHHHHHhhCCCEE
Confidence                0   0    11100         1224578999999999999998864432 1    22555666666543

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.72  E-value=1.7e-07  Score=91.54  Aligned_cols=146  Identities=19%  Similarity=0.310  Sum_probs=101.5

Q ss_pred             ccccccccccCCcHHHHHHHHccC-----C-CCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCc
Q 037675          238 NENQRYIKARGKNDFLIDDVLALG-----S-GGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFP  311 (418)
Q Consensus       238 ~e~~~W~~~~~~y~~~I~~lL~l~-----~-g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~  311 (418)
                      ..|..|.+....    ..++|...     + ....++||+|+|.|..+..|+..--.+  .+-+.|..|.....+||. .
T Consensus        66 gRG~MFvfS~~Q----~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v--~aTE~S~~Mr~rL~~kg~-~  138 (265)
T PF05219_consen   66 GRGSMFVFSEEQ----FRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEV--YATEASPPMRWRLSKKGF-T  138 (265)
T ss_pred             cCCcEEEecHHH----HHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceE--EeecCCHHHHHHHHhCCC-e
Confidence            355666665332    33344332     2 145689999999999999998763222  235999999999999998 3


Q ss_pred             eee-cccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec--cc------C----c-------
Q 037675          312 LYL-SLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF--YC------A----N-------  371 (418)
Q Consensus       312 ~~~-~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~--~~------~----~-------  371 (418)
                      ++- .+   +.-.+..||+|-|.++|..-..|.   .+|.+|++.|+|+|.+++.-.  ++      .    .       
T Consensus       139 vl~~~~---w~~~~~~fDvIscLNvLDRc~~P~---~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~  212 (265)
T PF05219_consen  139 VLDIDD---WQQTDFKFDVISCLNVLDRCDRPL---TLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPV  212 (265)
T ss_pred             EEehhh---hhccCCceEEEeehhhhhccCCHH---HHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCC
Confidence            332 21   222356899999999999877665   899999999999999987642  11      1    0       


Q ss_pred             -----hhHHHHHHHHHHHcCcEEEEEEEcc
Q 037675          372 -----DEKKSALTRLIERFGYKKLKWVVGE  396 (418)
Q Consensus       372 -----ee~~~~~~~l~~~~Gfk~l~W~~~~  396 (418)
                           |+....+..+++.+||+...|...+
T Consensus       213 ~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P  242 (265)
T PF05219_consen  213 KGATFEEQVSSLVNVFEPAGFEVERWTRLP  242 (265)
T ss_pred             CCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence                 1111234488999999999998765

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.72  E-value=6.1e-08  Score=88.60  Aligned_cols=100  Identities=24%  Similarity=0.354  Sum_probs=68.6

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--Cceeec-ccCCCCCCCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--FPLYLS-LDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~-~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      .+|||+|||+|..+..+++++...-..++|+++.+++.+++    .++  +.++.. ..+.+  +++.||+|+++==++.
T Consensus        33 ~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~--~~~~fD~Iv~NPP~~~  110 (170)
T PF05175_consen   33 GRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL--PDGKFDLIVSNPPFHA  110 (170)
T ss_dssp             CEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC--CTTCEEEEEE---SBT
T ss_pred             CeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc--cccceeEEEEccchhc
Confidence            48999999999999999998533111457999988877655    344  223343 33433  3799999999754433


Q ss_pred             CC--ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          339 GG--QPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       339 ~~--~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      -.  ....++.++.+..+.|||||.+++...
T Consensus       111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~  141 (170)
T PF05175_consen  111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN  141 (170)
T ss_dssp             TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence            22  113467899999999999999976544

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.71  E-value=1.8e-07  Score=99.88  Aligned_cols=119  Identities=15%  Similarity=0.207  Sum_probs=78.3

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCc-
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSG-  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~-  335 (418)
                      .+|||+|||+|.++..++..  +..+  +++|+++.+++.|+++    ++   +.++.++... ++++++||+|+++-- 
T Consensus       140 ~~VLDlG~GsG~iai~la~~~p~~~v--~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY  216 (506)
T PRK01544        140 LNILELGTGSGCIAISLLCELPNANV--IATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY  216 (506)
T ss_pred             CEEEEccCchhHHHHHHHHHCCCCeE--EEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence            48999999999999988865  3444  3579999999877654    43   2334443221 234678999999421 


Q ss_pred             -------------CcCC------CCh---hHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          336 -------------LDVG------GQP---EKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       336 -------------L~~~------~~~---~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                                   ..+.      ...   .....++.++.++|+|||.+++...+.+.    +.+..+++..||+.+.
T Consensus       217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~----~~v~~~~~~~g~~~~~  290 (506)
T PRK01544        217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQE----EAVTQIFLDHGYNIES  290 (506)
T ss_pred             CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchH----HHHHHHHHhcCCCceE
Confidence                         1110      111   22345788999999999999886443332    3366777888887653

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.71  E-value=2.4e-07  Score=87.91  Aligned_cols=121  Identities=23%  Similarity=0.351  Sum_probs=83.2

Q ss_pred             eEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhH----HHHHHcCC----CceeecccCC-CC------CCCCccce
Q 037675          267 IGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYS----EFIAARGL----FPLYLSLDHR-FP------FYDNVFDL  329 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l----~~a~eRGl----i~~~~~~~e~-LP------f~d~sFDl  329 (418)
                      +||+||+|||..+.+++..  +++-.  ..|.++...    +-+.+.|+    .|+..+.... .|      +..++||.
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~Wq--PSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~  105 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQ--PSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA  105 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEc--CCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence            6999999999999999987  34432  246555432    22444443    3444442222 33      34679999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch--------h---------------HHHHHHHHHHHcC
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND--------E---------------KKSALTRLIERFG  386 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e--------e---------------~~~~~~~l~~~~G  386 (418)
                      |+|.+++|...- ...+.++.+..++|+|||.|++-++|..+.        .               .-+.+.+++...|
T Consensus       106 i~~~N~lHI~p~-~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G  184 (204)
T PF06080_consen  106 IFCINMLHISPW-SAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG  184 (204)
T ss_pred             eeehhHHHhcCH-HHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence            999999986533 446789999999999999999999865420        0               1145778888888


Q ss_pred             cEEE
Q 037675          387 YKKL  390 (418)
Q Consensus       387 fk~l  390 (418)
                      ++..
T Consensus       185 L~l~  188 (204)
T PF06080_consen  185 LELE  188 (204)
T ss_pred             CccC
Confidence            8754

The function of this family is unknown.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.67  E-value=1.7e-07  Score=98.20  Aligned_cols=134  Identities=12%  Similarity=0.186  Sum_probs=88.4

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCCC--ceeecccCCCC-C
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGLF--PLYLSLDHRFP-F  322 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGli--~~~~~~~e~LP-f  322 (418)
                      .+..++...+|  .+|||+|||+|+.+.++++.   +-.+  +++|+++.+++.+++    .|+.  .+..++...++ +
T Consensus       228 ~~~~~l~~~~g--~~VLD~cagpGgkt~~la~~~~~~g~V--~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~  303 (431)
T PRK14903        228 IVPLLMELEPG--LRVLDTCAAPGGKTTAIAELMKDQGKI--LAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY  303 (431)
T ss_pred             HHHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCCCCEE--EEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh
Confidence            34445556666  48999999999999888875   2344  357999999877654    3542  34446666666 5


Q ss_pred             CCCccceEEec------CcCcCC------CChh-------HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHH
Q 037675          323 YDNVFDLVHAS------SGLDVG------GQPE-------KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIE  383 (418)
Q Consensus       323 ~d~sFDlV~s~------~~L~~~------~~~~-------~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~  383 (418)
                      .+++||.|++.      +++..-      ..+.       .-..+|.+..+.|||||+++.+......+|.++.+..+++
T Consensus       304 ~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~  383 (431)
T PRK14903        304 VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY  383 (431)
T ss_pred             hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence            57889999973      222210      0111       1146789999999999999888776666666666666666


Q ss_pred             Hc-CcEEE
Q 037675          384 RF-GYKKL  390 (418)
Q Consensus       384 ~~-Gfk~l  390 (418)
                      +. +|+.+
T Consensus       384 ~~~~~~~~  391 (431)
T PRK14903        384 EQKDAEVI  391 (431)
T ss_pred             hCCCcEEe
Confidence            42 45433

>PHA03411 putative methyltransferase; Provisional

Probab=98.63  E-value=3.1e-07  Score=90.79  Aligned_cols=121  Identities=13%  Similarity=0.117  Sum_probs=85.3

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcC-CCceeecccCCCCCCCCccceEEecCcCcCCCCh
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARG-LFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQP  342 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRG-li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~  342 (418)
                      .+|||+|||+|.++..++++  +..++  ++|+++.|++.++++- -+.++.++...+. .+++||+|+++--+.+....
T Consensus        66 grVLDLGcGsGilsl~la~r~~~~~V~--gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~  142 (279)
T PHA03411         66 GKVLDLCAGIGRLSFCMLHRCKPEKIV--CVELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTT  142 (279)
T ss_pred             CeEEEcCCCCCHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCch
Confidence            48999999999999888775  34553  5799999999888752 1345566666654 35789999998666643211


Q ss_pred             --hH---------------HHHHHHHhhccccCCcEEEEEe---cccCchhHHHHHHHHHHHcCcEE
Q 037675          343 --EK---------------LEFLMFDFDRILRAGGLFWLDN---FYCANDEKKSALTRLIERFGYKK  389 (418)
Q Consensus       343 --~~---------------le~~L~Ei~RVLRPGG~~ii~~---~~~~~ee~~~~~~~l~~~~Gfk~  389 (418)
                        .+               +..++..+.++|+|+|.+++..   +..+..-..++|..+++..||..
T Consensus       143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~  209 (279)
T PHA03411        143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVT  209 (279)
T ss_pred             hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEe
Confidence              11               3578889999999999775542   12222333457999999999964

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.61  E-value=9.9e-08  Score=91.36  Aligned_cols=100  Identities=18%  Similarity=0.192  Sum_probs=74.5

Q ss_pred             CCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675          263 GGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       263 g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      ...++|+|||+|+|.++..++++  ++.++  .+|. +..++.+.+..-+.+..++.. -|+|.  +|+++..++||.|.
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~--v~Dl-p~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~  172 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRAT--VFDL-PEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS  172 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEE--EEE--HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcce--eecc-HhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence            34579999999999999999987  45543  3576 666666666544455556554 45555  99999999999997


Q ss_pred             ChhHHHHHHHHhhccccCC--cEEEEEeccc
Q 037675          341 QPEKLEFLMFDFDRILRAG--GLFWLDNFYC  369 (418)
Q Consensus       341 ~~~~le~~L~Ei~RVLRPG--G~~ii~~~~~  369 (418)
                      +. ....+|+.+.+.|+||  |.++|.+...
T Consensus       173 d~-~~~~iL~~~~~al~pg~~g~llI~e~~~  202 (241)
T PF00891_consen  173 DE-DCVKILRNAAAALKPGKDGRLLIIEMVL  202 (241)
T ss_dssp             HH-HHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred             hH-HHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence            65 4568999999999999  9999988754

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK00811 spermidine synthase; Provisional

Probab=98.61  E-value=1.8e-07  Score=92.62  Aligned_cols=100  Identities=21%  Similarity=0.263  Sum_probs=68.9

Q ss_pred             CCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc------CC-----CceeecccCC-CCCCCCccceE
Q 037675          264 GIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR------GL-----FPLYLSLDHR-FPFYDNVFDLV  330 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR------Gl-----i~~~~~~~e~-LPf~d~sFDlV  330 (418)
                      ..++|||+|||.|..+..+.++ ++.-+ ..+|+++.+++.+++.      +.     +.++++++.. +...+++||+|
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V-~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKI-TLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEE-EEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            3569999999999999999887 55332 3479999999888763      11     2334444432 23357799999


Q ss_pred             EecCcCcCCCChhH--HHHHHHHhhccccCCcEEEEE
Q 037675          331 HASSGLDVGGQPEK--LEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       331 ~s~~~L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      ++...- ++.....  -+.++.++.|.|+|||.+++.
T Consensus       155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        155 IVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             EECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            986432 2222221  147889999999999998764

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.59  E-value=4e-07  Score=86.99  Aligned_cols=129  Identities=12%  Similarity=0.123  Sum_probs=86.2

Q ss_pred             CCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc-----CC-CceeecccCCCCCCCCccceEEecCcCc
Q 037675          264 GIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR-----GL-FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR-----Gl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      ...++||.|+|.|..+..|.-.-...| ..+|..+.+++.|.+.     +. ...+.-..+.+-..++.||+|++-.|+.
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~V-DlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg  133 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEV-DLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG  133 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEE-EEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred             CcceEEecccccchhHHHHHHHhcCEe-EEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence            467899999999999987765533322 1259999999998853     11 2233345666654567999999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccCch------------hHHHHHHHHHHHcCcEEEEEEE
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND------------EKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e------------e~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      |..+. ++-.+|......|+|||.++|-+-.+..+            ...+.|..+++++|++.++-..
T Consensus       134 hLTD~-dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~  201 (218)
T PF05891_consen  134 HLTDE-DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEK  201 (218)
T ss_dssp             GS-HH-HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred             cCCHH-HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence            99875 57789999999999999998876533221            1246799999999999986443

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.59  E-value=5.6e-07  Score=87.72  Aligned_cols=134  Identities=17%  Similarity=0.210  Sum_probs=83.4

Q ss_pred             CcHHHHHHHHcc-C-CCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CCCceeecccCC-
Q 037675          249 KNDFLIDDVLAL-G-SGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GLFPLYLSLDHR-  319 (418)
Q Consensus       249 ~y~~~I~~lL~l-~-~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gli~~~~~~~e~-  319 (418)
                      .++.+++.++.. . .....+|||+|||+|.++..+++.  +..++  ++|+++.+++.++++    +. .++.++... 
T Consensus        69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~--~vDis~~al~~A~~N~~~~~~-~~~~~D~~~~  145 (251)
T TIGR03704        69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELH--AADIDPAAVRCARRNLADAGG-TVHEGDLYDA  145 (251)
T ss_pred             cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHHHHcCC-EEEEeechhh
Confidence            455556555442 2 112247999999999999998865  34553  579999998876653    33 445554432 


Q ss_pred             CCC-CCCccceEEecCcCc------C-------CCC----------hhHHHHHHHHhhccccCCcEEEEEecccCchhHH
Q 037675          320 FPF-YDNVFDLVHASSGLD------V-------GGQ----------PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKK  375 (418)
Q Consensus       320 LPf-~d~sFDlV~s~~~L~------~-------~~~----------~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~  375 (418)
                      ++- ..+.||+|+++-=..      .       ..+          .+-+..++..+.++|||||.+++.....+.    
T Consensus       146 l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~----  221 (251)
T TIGR03704       146 LPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQA----  221 (251)
T ss_pred             cchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchH----
Confidence            321 135799999862111      0       000          111357788888999999999887553322    


Q ss_pred             HHHHHHHHHcCcEE
Q 037675          376 SALTRLIERFGYKK  389 (418)
Q Consensus       376 ~~~~~l~~~~Gfk~  389 (418)
                      +.+..+++..||+.
T Consensus       222 ~~v~~~l~~~g~~~  235 (251)
T TIGR03704       222 PLAVEAFARAGLIA  235 (251)
T ss_pred             HHHHHHHHHCCCCc
Confidence            23666777788753

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.58  E-value=6.2e-07  Score=87.42  Aligned_cols=138  Identities=16%  Similarity=0.210  Sum_probs=91.4

Q ss_pred             CCcHHHHHHHHc---cCCCCCCeEEEECCccChHHHHHhhc-C-cEEEEeccCCCHHhHHHHHHc----CC---Cceeec
Q 037675          248 GKNDFLIDDVLA---LGSGGIRIGFDIGGGSGTFAARMAER-N-VTVITNTLNVDAPYSEFIAAR----GL---FPLYLS  315 (418)
Q Consensus       248 ~~y~~~I~~lL~---l~~g~~r~VLDvGCGtG~faa~La~~-g-V~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~  315 (418)
                      .++.+-+|.+|=   ......++|||+|||+|..+..++++ . +.++  ++++.+.+.++|.+.    ++   +.++++
T Consensus        25 ~~~~~~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~--~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~  102 (248)
T COG4123          25 CGFRYGTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIV--GVEIQEEAAEMAQRNVALNPLEERIQVIEA  102 (248)
T ss_pred             CccccccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEE--EEEeCHHHHHHHHHHHHhCcchhceeEehh
Confidence            345555555431   11222579999999999999999998 4 5554  479999988887663    22   455566


Q ss_pred             ccCCCC--CCCCccceEEecCcCc---------------CCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHH
Q 037675          316 LDHRFP--FYDNVFDLVHASSGLD---------------VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSAL  378 (418)
Q Consensus       316 ~~e~LP--f~d~sFDlV~s~~~L~---------------~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~  378 (418)
                      +..++.  ..-.+||+|+|+==+.               ++.....++.++.-..++|||||++.+..+.    +.-.++
T Consensus       103 Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~----erl~ei  178 (248)
T COG4123         103 DIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP----ERLAEI  178 (248)
T ss_pred             hHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH----HHHHHH
Confidence            655553  2344799999962111               1222345788999999999999999776553    322346


Q ss_pred             HHHHHHcCcEEEE
Q 037675          379 TRLIERFGYKKLK  391 (418)
Q Consensus       379 ~~l~~~~Gfk~l~  391 (418)
                      ..++..++|...+
T Consensus       179 ~~~l~~~~~~~k~  191 (248)
T COG4123         179 IELLKSYNLEPKR  191 (248)
T ss_pred             HHHHHhcCCCceE
Confidence            7778887776555

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.57  E-value=5.9e-07  Score=86.63  Aligned_cols=99  Identities=10%  Similarity=-0.004  Sum_probs=77.6

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH-cCC-----------------CceeecccCCCCCCC---
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA-RGL-----------------FPLYLSLDHRFPFYD---  324 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e-RGl-----------------i~~~~~~~e~LPf~d---  324 (418)
                      .+||+.|||.|.-+..|+++|..|+  ++|+|+..++.+.+ .++                 +.++.++.-.++...   
T Consensus        45 ~rvLvPgCGkg~D~~~LA~~G~~V~--GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~  122 (226)
T PRK13256         45 SVCLIPMCGCSIDMLFFLSKGVKVI--GIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL  122 (226)
T ss_pred             CeEEEeCCCChHHHHHHHhCCCcEE--EEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence            5899999999999999999999876  58999987776533 211                 244556666776422   


Q ss_pred             CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          325 NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       325 ~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +.||+|+-..+|+... ++.-..+...|.++|+|||.+++..+
T Consensus       123 ~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~llll~~  164 (226)
T PRK13256        123 PVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILLLVM  164 (226)
T ss_pred             CCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence            6899999999998874 45667999999999999998866554

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.55  E-value=1.5e-07  Score=95.39  Aligned_cols=102  Identities=16%  Similarity=0.145  Sum_probs=70.4

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC---------------C-CceeecccC------CCCC
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG---------------L-FPLYLSLDH------RFPF  322 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG---------------l-i~~~~~~~e------~LPf  322 (418)
                      ..+|||+|||-|+-..-....++.-+ +++|++..-++.|++|-               . ..++.+++.      .++.
T Consensus        63 ~~~VLDl~CGkGGDL~Kw~~~~i~~~-vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   63 GLTVLDLCCGKGGDLQKWQKAKIKHY-VGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             T-EEEEET-TTTTTHHHHHHTT-SEE-EEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCeEEEecCCCchhHHHHHhcCCCEE-EEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            46899999999987666666665543 45899998888887764               1 011223322      2333


Q ss_pred             CCCccceEEecCcCcC-CCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          323 YDNVFDLVHASSGLDV-GGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       323 ~d~sFDlV~s~~~L~~-~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ....||+|-|..+||+ +...+..+.+|..+.+.|||||+||.+.+
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            3469999999999996 56677788899999999999999988765

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK04457 spermidine synthase; Provisional

Probab=98.54  E-value=1.2e-06  Score=86.02  Aligned_cols=98  Identities=14%  Similarity=0.163  Sum_probs=66.9

Q ss_pred             CCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc-CC------CceeecccCC-CCCCCCccceEEecC
Q 037675          265 IRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR-GL------FPLYLSLDHR-FPFYDNVFDLVHASS  334 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR-Gl------i~~~~~~~e~-LPf~d~sFDlV~s~~  334 (418)
                      .++|||||||+|.++..++++.  ..+  .++|+++.+++.|++. +.      +.++++++.. ++-.+++||+|++..
T Consensus        67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v--~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         67 PQHILQIGLGGGSLAKFIYTYLPDTRQ--TAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCEEEEECCCHhHHHHHHHHhCCCCeE--EEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            4689999999999999998762  333  3579999999998875 21      1234454322 222346899999853


Q ss_pred             cCcCCCCh--hHHHHHHHHhhccccCCcEEEEE
Q 037675          335 GLDVGGQP--EKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       335 ~L~~~~~~--~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                       ++....+  .....++.++.++|+|||.+++.
T Consensus       145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence             2211111  11248999999999999999774

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=2.1e-06  Score=85.17  Aligned_cols=133  Identities=22%  Similarity=0.300  Sum_probs=86.2

Q ss_pred             cccCCcHHHHHHHHc-cCCCCCCeEEEECCccChHHHHHhhcCc--EEEEeccCCCHHhHHHHHH----cCCCceee---
Q 037675          245 KARGKNDFLIDDVLA-LGSGGIRIGFDIGGGSGTFAARMAERNV--TVITNTLNVDAPYSEFIAA----RGLFPLYL---  314 (418)
Q Consensus       245 ~~~~~y~~~I~~lL~-l~~g~~r~VLDvGCGtG~faa~La~~gV--~vv~~alD~s~~~l~~a~e----RGli~~~~---  314 (418)
                      .|...+..+++.++. +..... +|||+|||+|..|..++....  .|  .++|+|+..++.|++    .|+..+..   
T Consensus        91 iPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V--~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~  167 (280)
T COG2890          91 IPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEV--IAVDISPDALALARENAERNGLVRVLVVQS  167 (280)
T ss_pred             ecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeE--EEEECCHHHHHHHHHHHHHcCCccEEEEee
Confidence            444556666666542 222222 799999999999999998854  44  468999988876654    45433222   


Q ss_pred             cccCCCCCCCCccceEEec--CcCcC-----------------CC---ChhHHHHHHHHhhccccCCcEEEEEecccCch
Q 037675          315 SLDHRFPFYDNVFDLVHAS--SGLDV-----------------GG---QPEKLEFLMFDFDRILRAGGLFWLDNFYCAND  372 (418)
Q Consensus       315 ~~~e~LPf~d~sFDlV~s~--~~L~~-----------------~~---~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e  372 (418)
                      ++.+.+   .+.||+|+++  ++=..                 +.   -.+-...++.++.+.|+|||.+++..-+.+.+
T Consensus       168 dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~  244 (280)
T COG2890         168 DLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGE  244 (280)
T ss_pred             eccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHH
Confidence            233333   3389999996  11110                 00   11245678899999999999998876655544


Q ss_pred             hHHHHHHHHHHHcCc
Q 037675          373 EKKSALTRLIERFGY  387 (418)
Q Consensus       373 e~~~~~~~l~~~~Gf  387 (418)
                      .    +.+++...|+
T Consensus       245 ~----v~~~~~~~~~  255 (280)
T COG2890         245 A----VKALFEDTGF  255 (280)
T ss_pred             H----HHHHHHhcCC
Confidence            4    6777888884

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.52  E-value=4.2e-07  Score=91.90  Aligned_cols=95  Identities=20%  Similarity=0.229  Sum_probs=65.9

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc-Cc--EEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCCCCCCccc
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER-NV--TVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFPFYDNVFD  328 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~-gV--~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LPf~d~sFD  328 (418)
                      +++.++  .+|||+|||+|.+++.+++. +.  .++  ++|.++.+++.|++    .|+  +.+..++....+.....||
T Consensus        76 L~i~~g--~~VLDIG~GtG~~a~~LA~~~~~~g~Vv--gVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD  151 (322)
T PRK13943         76 VGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVV--SVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYD  151 (322)
T ss_pred             cCCCCC--CEEEEEeCCccHHHHHHHHhcCCCCEEE--EEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCcc
Confidence            345555  48999999999999999875 21  233  47999999987765    344  2334455555555557899


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      +|++...+..         ....+.++|||||.+++.
T Consensus       152 ~Ii~~~g~~~---------ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        152 VIFVTVGVDE---------VPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             EEEECCchHH---------hHHHHHHhcCCCCEEEEE
Confidence            9998754432         233567899999998774

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.51  E-value=7e-07  Score=81.30  Aligned_cols=96  Identities=13%  Similarity=0.117  Sum_probs=69.9

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ  341 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~  341 (418)
                      .+|||+|||+|.++..+++++..++  ++|.++.+++.++++-    -+.++.+++.++++++..||.|+++--++..  
T Consensus        15 ~~vLEiG~G~G~lt~~l~~~~~~v~--~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~~--   90 (169)
T smart00650       15 DTVLEIGPGKGALTEELLERAARVT--AIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYNIS--   90 (169)
T ss_pred             CEEEEECCCccHHHHHHHhcCCeEE--EEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCcccH--
Confidence            4899999999999999999865553  4799999998887652    2356678888999888889999987544432  


Q ss_pred             hhHHHHHHHHhhccccCCcEEEEEec
Q 037675          342 PEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       342 ~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ...+..++.+..  +.++|++++...
T Consensus        91 ~~~i~~~l~~~~--~~~~~~l~~q~e  114 (169)
T smart00650       91 TPILFKLLEEPP--AFRDAVLMVQKE  114 (169)
T ss_pred             HHHHHHHHhcCC--CcceEEEEEEHH
Confidence            233444444322  568898877654

>PRK01581 speE spermidine synthase; Validated

Probab=98.47  E-value=1.9e-06  Score=88.42  Aligned_cols=128  Identities=13%  Similarity=0.123  Sum_probs=80.2

Q ss_pred             CCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHc--------C-C----CceeecccCC-CCCCCCccc
Q 037675          264 GIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAAR--------G-L----FPLYLSLDHR-FPFYDNVFD  328 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eR--------G-l----i~~~~~~~e~-LPf~d~sFD  328 (418)
                      ..++||++|||+|..+..+.+.+ +.-+ ..+|+++.+++.|++.        + +    +.++++++.+ ++-.++.||
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~I-t~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHV-DLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            35699999999999888888764 3332 3479999999999862        1 1    1223443333 334567899


Q ss_pred             eEEecCcCcCCCC---hhHHHHHHHHhhccccCCcEEEEEecccC-chhHHHHHHHHHHHcCcEEEEEE
Q 037675          329 LVHASSGLDVGGQ---PEKLEFLMFDFDRILRAGGLFWLDNFYCA-NDEKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       329 lV~s~~~L~~~~~---~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-~ee~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      +|++... .....   .---..++..+.+.|+|||.+++...... ..+.-..+...++..++......
T Consensus       229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~  296 (374)
T PRK01581        229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYH  296 (374)
T ss_pred             EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEE
Confidence            9998732 11110   01113688999999999999866532111 11221235667778888766433

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=4.3e-06  Score=83.43  Aligned_cols=112  Identities=21%  Similarity=0.307  Sum_probs=73.7

Q ss_pred             CcHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCc--EEEEeccCCCHHhHHHHHH----cCCCc--eeecccCCC
Q 037675          249 KNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNV--TVITNTLNVDAPYSEFIAA----RGLFP--LYLSLDHRF  320 (418)
Q Consensus       249 ~y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV--~vv~~alD~s~~~l~~a~e----RGli~--~~~~~~e~L  320 (418)
                      +.+.+++. ++...+  .+|||+|||.|-++..|++++.  .+.  -+|++...++.+++    .++..  ++.++. -.
T Consensus       146 GS~lLl~~-l~~~~~--~~vlDlGCG~Gvlg~~la~~~p~~~vt--mvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~-~~  219 (300)
T COG2813         146 GSRLLLET-LPPDLG--GKVLDLGCGYGVLGLVLAKKSPQAKLT--LVDVNARAVESARKNLAANGVENTEVWASNL-YE  219 (300)
T ss_pred             HHHHHHHh-CCccCC--CcEEEeCCCccHHHHHHHHhCCCCeEE--EEecCHHHHHHHHHhHHHcCCCccEEEEecc-cc
Confidence            34445544 343333  2899999999999999999852  221  16999888877654    34432  233322 22


Q ss_pred             CCCCCccceEEecCcCcCCC--ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          321 PFYDNVFDLVHASSGLDVGG--QPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       321 Pf~d~sFDlV~s~~~L~~~~--~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +..+ .||+|+|+==||--.  ...--+.++.+..+.|++||.+||..-
T Consensus       220 ~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         220 PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            3344 999999986666321  122234789999999999999988765

>TIGR00417 speE spermidine synthase

Probab=98.43  E-value=6.1e-06  Score=81.06  Aligned_cols=100  Identities=19%  Similarity=0.235  Sum_probs=65.5

Q ss_pred             CCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHcC--C--------CceeecccCC-CCCCCCccceEE
Q 037675          264 GIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAARG--L--------FPLYLSLDHR-FPFYDNVFDLVH  331 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eRG--l--------i~~~~~~~e~-LPf~d~sFDlV~  331 (418)
                      ..++|||+|||+|.++..+.++. +.-+ ..+|+++.+++.+++.-  .        +.+..++... +...+++||+|+
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v-~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKA-TLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceE-EEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            34699999999999998888774 3222 34799999988776631  0        1222222211 222357899999


Q ss_pred             ecCcCcCCCChhH--HHHHHHHhhccccCCcEEEEE
Q 037675          332 ASSGLDVGGQPEK--LEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       332 s~~~L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      +..... ......  .+.++..+.+.|+|||.+++.
T Consensus       151 ~D~~~~-~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       151 VDSTDP-VGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             EeCCCC-CCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            865422 221111  247889999999999999775

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK03612 spermidine synthase; Provisional

Probab=98.43  E-value=1.9e-06  Score=92.24  Aligned_cols=123  Identities=13%  Similarity=0.091  Sum_probs=79.4

Q ss_pred             CCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHcC-------------CCceeecccCC-CCCCCCccc
Q 037675          264 GIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAARG-------------LFPLYLSLDHR-FPFYDNVFD  328 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eRG-------------li~~~~~~~e~-LPf~d~sFD  328 (418)
                      +.++|||+|||+|..+..+.+++ +.-+ ..+|+++++++.+++.-             .+.++.++..+ +...+++||
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v-~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQV-TLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeE-EEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            34689999999999999988874 3322 35899999999988731             11233444433 233457899


Q ss_pred             eEEecCcCcCCCChh--HHHHHHHHhhccccCCcEEEEEecc-cCchhHHHHHHHHHHHcCc
Q 037675          329 LVHASSGLDVGGQPE--KLEFLMFDFDRILRAGGLFWLDNFY-CANDEKKSALTRLIERFGY  387 (418)
Q Consensus       329 lV~s~~~L~~~~~~~--~le~~L~Ei~RVLRPGG~~ii~~~~-~~~ee~~~~~~~l~~~~Gf  387 (418)
                      +|++...........  --+.++.++.+.|||||.+++.... ....+.-..+.+.+++.||
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf  437 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL  437 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence            999974322111000  0135788999999999999875421 1122222456777888888

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.38  E-value=2.7e-06  Score=68.71  Aligned_cols=95  Identities=26%  Similarity=0.352  Sum_probs=65.3

Q ss_pred             EEEECCccChHH--HHHhhcCcEEEEeccCCCHHhHHHHHHcCC------CceeecccCC--CCCCC-CccceEEecCcC
Q 037675          268 GFDIGGGSGTFA--ARMAERNVTVITNTLNVDAPYSEFIAARGL------FPLYLSLDHR--FPFYD-NVFDLVHASSGL  336 (418)
Q Consensus       268 VLDvGCGtG~fa--a~La~~gV~vv~~alD~s~~~l~~a~eRGl------i~~~~~~~e~--LPf~d-~sFDlV~s~~~L  336 (418)
                      ++|+|||+|...  ..+...+..+++  +|.++.+++.+..+..      +.....+...  +|+.+ ..||++ +....
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~  128 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRGAYVVG--VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV  128 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCCceEEE--EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence            999999999855  333332335543  7999988876544331      1344444444  88888 599999 66555


Q ss_pred             cCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      .++..   ....+.++.|+|+|+|.+++....
T Consensus       129 ~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         129 LHLLP---PAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             hhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence            44433   348999999999999999887663

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.34  E-value=1e-06  Score=83.95  Aligned_cols=98  Identities=24%  Similarity=0.354  Sum_probs=63.7

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhhc-C-cE-EEEeccCCCHHhHHHHHHc----CC--Cceeeccc-CCCCCC
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAER-N-VT-VITNTLNVDAPYSEFIAAR----GL--FPLYLSLD-HRFPFY  323 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-g-V~-vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~-e~LPf~  323 (418)
                      +-+.+.+++|.  +|||||||+|.+++.|+.. + +. |+  ++|.++...+.|+++    |+  +.+.+++. ..+| .
T Consensus        64 ~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv--~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-~  138 (209)
T PF01135_consen   64 MLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVV--SVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP-E  138 (209)
T ss_dssp             HHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEE--EEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-G
T ss_pred             HHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEE--EECccHHHHHHHHHHHHHhccCceeEEEcchhhccc-c
Confidence            33445677774  9999999999999999876 3 32 33  479999888777654    44  23445543 2332 3


Q ss_pred             CCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          324 DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       324 d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      ...||.|++.......  +.       ++.+-||+||++++-
T Consensus       139 ~apfD~I~v~~a~~~i--p~-------~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  139 EAPFDRIIVTAAVPEI--PE-------ALLEQLKPGGRLVAP  171 (209)
T ss_dssp             G-SEEEEEESSBBSS----H-------HHHHTEEEEEEEEEE
T ss_pred             CCCcCEEEEeeccchH--HH-------HHHHhcCCCcEEEEE
Confidence            4579999998877533  22       566779999999663

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PLN02366 spermidine synthase

Probab=98.32  E-value=7.3e-06  Score=82.45  Aligned_cols=99  Identities=18%  Similarity=0.230  Sum_probs=66.2

Q ss_pred             CCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcC------C----CceeecccCCC--CCCCCccceEE
Q 037675          265 IRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARG------L----FPLYLSLDHRF--PFYDNVFDLVH  331 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRG------l----i~~~~~~~e~L--Pf~d~sFDlV~  331 (418)
                      .++||+||||.|..+..++++ ++.-+ ..+|+++.+++.+++.-      +    +.++.+++..+  ..+++.||+|+
T Consensus        92 pkrVLiIGgG~G~~~rellk~~~v~~V-~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi  170 (308)
T PLN02366         92 PKKVLVVGGGDGGVLREIARHSSVEQI-DICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII  170 (308)
T ss_pred             CCeEEEEcCCccHHHHHHHhCCCCCeE-EEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence            569999999999999999987 34332 24699999998877631      1    23344443211  12367899999


Q ss_pred             ecCcCcCCCChhH--HHHHHHHhhccccCCcEEEEE
Q 037675          332 ASSGLDVGGQPEK--LEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       332 s~~~L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      +...- ++.....  -+.++..+.+.|+|||.+++-
T Consensus       171 ~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        171 VDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             EcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            85432 2222111  236889999999999998653

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.31  E-value=9.1e-07  Score=88.66  Aligned_cols=103  Identities=15%  Similarity=0.119  Sum_probs=73.6

Q ss_pred             CCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----------C--Cceeeccc------CCCCCCCC
Q 037675          264 GIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----------L--FPLYLSLD------HRFPFYDN  325 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----------l--i~~~~~~~------e~LPf~d~  325 (418)
                      ....++|+|||-|+-..-.-+.|+--. +++|+.+.-++.|+.|-          +  +.++.+++      +.+++.+.
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~-igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp  195 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGIGEY-IGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP  195 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcccce-EeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence            345799999999987766655554322 23677776666555541          1  12233433      46677787


Q ss_pred             ccceEEecCcCcC-CCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          326 VFDLVHASSGLDV-GGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       326 sFDlV~s~~~L~~-~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .||+|-|-.++|. +...+....+|..+.+.|||||+||-+.|
T Consensus       196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP  238 (389)
T KOG1975|consen  196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP  238 (389)
T ss_pred             CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence            8999999999995 66667778999999999999999977765

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.28  E-value=6.1e-06  Score=79.10  Aligned_cols=125  Identities=20%  Similarity=0.179  Sum_probs=84.6

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHH-HHcCCC-----------------ceeecccCCCCCCC-Cc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFI-AARGLF-----------------PLYLSLDHRFPFYD-NV  326 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a-~eRGli-----------------~~~~~~~e~LPf~d-~s  326 (418)
                      .+||+.|||.|.-+..|+++|..|+  ++|+|+..++.+ .++++.                 .++.++.-.++-.. +.
T Consensus        39 ~rvLvPgCG~g~D~~~La~~G~~Vv--GvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~  116 (218)
T PF05724_consen   39 GRVLVPGCGKGYDMLWLAEQGHDVV--GVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGK  116 (218)
T ss_dssp             EEEEETTTTTSCHHHHHHHTTEEEE--EEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHS
T ss_pred             CeEEEeCCCChHHHHHHHHCCCeEE--EEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCC
Confidence            4899999999999999999998886  489999888776 444431                 12234444544333 47


Q ss_pred             cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec-ccC----ch---hHHHHHHHHHHHcCcEEEEEEE
Q 037675          327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF-YCA----ND---EKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~-~~~----~e---e~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      ||+|+=..+|+-.+ ++.-+.+...|.++|||||.+++... +..    ++   -..+++.+++. -+|+......
T Consensus       117 fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~  190 (218)
T PF05724_consen  117 FDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEE  190 (218)
T ss_dssp             EEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred             ceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence            99999988887664 55677999999999999999433332 211    11   12355777777 5677655444

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.28  E-value=2.4e-06  Score=82.51  Aligned_cols=123  Identities=24%  Similarity=0.306  Sum_probs=82.5

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHH----cCC----CceeecccCCC--CCCCCccceEEec-
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAA----RGL----FPLYLSLDHRF--PFYDNVFDLVHAS-  333 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~e----RGl----i~~~~~~~e~L--Pf~d~sFDlV~s~-  333 (418)
                      .+|||.-.|-|.+|..-.++|. .|++  ++.+++.++.|.-    |++    +.++.+++.++  .|.|.+||.|+-. 
T Consensus       136 ~rVLDtC~GLGYtAi~a~~rGA~~Vit--vEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP  213 (287)
T COG2521         136 ERVLDTCTGLGYTAIEALERGAIHVIT--VEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP  213 (287)
T ss_pred             CEeeeeccCccHHHHHHHHcCCcEEEE--EeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence            5999999999999999999996 6654  4555555555433    333    34556665544  4789999999753 


Q ss_pred             CcCcCCCChhHHHHHHHHhhccccCCcEEE--EEecc--cCchhHHHHHHHHHHHcCcEEEE
Q 037675          334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFW--LDNFY--CANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~i--i~~~~--~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      =-|...... =-+.+..|++|||||||.++  +..+.  ..+-+......+.+++.||.+++
T Consensus       214 PRfS~AgeL-YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~  274 (287)
T COG2521         214 PRFSLAGEL-YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVK  274 (287)
T ss_pred             CccchhhhH-hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeee
Confidence            112221111 12478999999999999882  33332  12345556688889999999875

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.25  E-value=5.4e-06  Score=80.01  Aligned_cols=106  Identities=13%  Similarity=0.169  Sum_probs=69.9

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC---CceeecccCC-CC-
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHR-FP-  321 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~-LP-  321 (418)
                      +..++.+..+  ++|||+|||+|..+..|+..   +-.+  +++|.++.+++.|++    .|+   +.++.+++.+ ++ 
T Consensus        60 L~~l~~~~~~--~~vLEiGt~~G~s~l~la~~~~~~g~v--~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~  135 (234)
T PLN02781         60 LSMLVKIMNA--KNTLEIGVFTGYSLLTTALALPEDGRI--TAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQ  135 (234)
T ss_pred             HHHHHHHhCC--CEEEEecCcccHHHHHHHHhCCCCCEE--EEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH
Confidence            3334444433  58999999999877766653   2334  347999888877654    354   3344554432 22 


Q ss_pred             ----CCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675          322 ----FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC  369 (418)
Q Consensus       322 ----f~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~  369 (418)
                          .++++||+|+...      ++.....++.++.+.|||||.+++++..+
T Consensus       136 l~~~~~~~~fD~VfiDa------~k~~y~~~~~~~~~ll~~GG~ii~dn~l~  181 (234)
T PLN02781        136 LLNNDPKPEFDFAFVDA------DKPNYVHFHEQLLKLVKVGGIIAFDNTLW  181 (234)
T ss_pred             HHhCCCCCCCCEEEECC------CHHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence                1256899999743      12344588999999999999998877644

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.23  E-value=4.2e-05  Score=71.64  Aligned_cols=122  Identities=19%  Similarity=0.200  Sum_probs=79.6

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHH----HcCCC--ceeeccc-CCCCCCCCccc
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIA----ARGLF--PLYLSLD-HRFPFYDNVFD  328 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~----eRGli--~~~~~~~-e~LPf~d~sFD  328 (418)
                      |.+.+|+  .++|||||||+.+..++-.  .-.+  +++|-++..++.+.    .-|+.  .++.+++ +.|+-.+ +||
T Consensus        30 L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v--~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~d  104 (187)
T COG2242          30 LRPRPGD--RLWDIGAGTGSITIEWALAGPSGRV--IAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPD  104 (187)
T ss_pred             hCCCCCC--EEEEeCCCccHHHHHHHHhCCCceE--EEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCC
Confidence            4556664  8999999999999888833  3444  35788877765443    33542  2334543 3444333 899


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCc-EEEEEEE
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGY-KKLKWVV  394 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gf-k~l~W~~  394 (418)
                      .|+.... -      .++.+|......|||||.+++..-.   -|......+.+++.|+ +.++-.+
T Consensus       105 aiFIGGg-~------~i~~ile~~~~~l~~ggrlV~nait---lE~~~~a~~~~~~~g~~ei~~v~i  161 (187)
T COG2242         105 AIFIGGG-G------NIEEILEAAWERLKPGGRLVANAIT---LETLAKALEALEQLGGREIVQVQI  161 (187)
T ss_pred             EEEECCC-C------CHHHHHHHHHHHcCcCCeEEEEeec---HHHHHHHHHHHHHcCCceEEEEEe
Confidence            9998775 2      2348899999999999999775332   2333345667888899 5554333

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.22  E-value=2.9e-05  Score=81.46  Aligned_cols=116  Identities=16%  Similarity=0.147  Sum_probs=74.7

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--CceeecccC----CCCCCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDH----RFPFYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e----~LPf~d~sFDlV~s~~~  335 (418)
                      .+|||+|||+|.++..|++++..++  ++|.++.|++.|+++    |+  +.++.++..    .+++.+++||+|++.- 
T Consensus       299 ~~VLDlgcGtG~~sl~la~~~~~V~--gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP-  375 (443)
T PRK13168        299 DRVLDLFCGLGNFTLPLARQAAEVV--GVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP-  375 (443)
T ss_pred             CEEEEEeccCCHHHHHHHHhCCEEE--EEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc-
Confidence            4899999999999999998876554  589999999877653    43  234445443    3456678899998732 


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEE
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                           +..++...+..+.+ ++|++.++++.-   ...+...+.. +...||+..+-..
T Consensus       376 -----Pr~g~~~~~~~l~~-~~~~~ivyvSCn---p~tlaRDl~~-L~~~gY~l~~i~~  424 (443)
T PRK13168        376 -----PRAGAAEVMQALAK-LGPKRIVYVSCN---PATLARDAGV-LVEAGYRLKRAGM  424 (443)
T ss_pred             -----CCcChHHHHHHHHh-cCCCeEEEEEeC---hHHhhccHHH-HhhCCcEEEEEEE
Confidence                 11223355555555 699999988742   2222222333 3456887665433

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.19  E-value=9.5e-06  Score=80.91  Aligned_cols=97  Identities=14%  Similarity=0.138  Sum_probs=68.7

Q ss_pred             eEEEECCccC----hHHHHHhhc------CcEEEEeccCCCHHhHHHHHHc--------CCC------------------
Q 037675          267 IGFDIGGGSG----TFAARMAER------NVTVITNTLNVDAPYSEFIAAR--------GLF------------------  310 (418)
Q Consensus       267 ~VLDvGCGtG----~faa~La~~------gV~vv~~alD~s~~~l~~a~eR--------Gli------------------  310 (418)
                      +|...||.||    +.|..|.+.      .+.+  ++.|+++..++.|++-        ++.                  
T Consensus       118 rIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I--~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        118 RVWSAAASTGEEPYSIAMTLADTLGTAPGRWKV--FASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             EEEEccccCCHHHHHHHHHHHHhhcccCCCcEE--EEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            8999999999    466666663      2455  3689999999876552        110                  


Q ss_pred             -----------ceeecccCCCCCC-CCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          311 -----------PLYLSLDHRFPFY-DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       311 -----------~~~~~~~e~LPf~-d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                                 .+...+....|++ .+.||+|+|.++|.+..+ +....++..+.+.|+|||+|++.+
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDK-TTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCH-HHHHHHHHHHHHHhCCCcEEEEeC
Confidence                       0001122232443 578999999999988854 456799999999999999997765

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=1.3e-05  Score=78.15  Aligned_cols=130  Identities=16%  Similarity=0.147  Sum_probs=84.6

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc----CCCc---eeecccCCCCCCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR----GLFP---LYLSLDHRFPFYD  324 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR----Gli~---~~~~~~e~LPf~d  324 (418)
                      +|-..+.+.+|.  +|||.|.|+|.++++|+.. |-+.-.++.|..+.+.+.|.+.    |+..   ...++....-+.+
T Consensus        85 ~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~  162 (256)
T COG2519          85 YIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE  162 (256)
T ss_pred             HHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence            555566788875  8999999999999999953 3221113468888888877653    4433   2234544443444


Q ss_pred             CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE-EEEcc
Q 037675          325 NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK-WVVGE  396 (418)
Q Consensus       325 ~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~-W~~~~  396 (418)
                       .||.|+... -.+|       .++..++.+|||||.+++-.++.  ++.++.+.. +++.||..++ |++..
T Consensus       163 -~vDav~LDm-p~PW-------~~le~~~~~Lkpgg~~~~y~P~v--eQv~kt~~~-l~~~g~~~ie~~E~l~  223 (256)
T COG2519         163 -DVDAVFLDL-PDPW-------NVLEHVSDALKPGGVVVVYSPTV--EQVEKTVEA-LRERGFVDIEAVETLV  223 (256)
T ss_pred             -ccCEEEEcC-CChH-------HHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHHH-HHhcCccchhhheeee
Confidence             899998522 2233       78899999999999886654433  344444444 4555998775 55533

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=1e-05  Score=77.01  Aligned_cols=100  Identities=20%  Similarity=0.229  Sum_probs=70.6

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--Cceeec-ccCCCCCCCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLS-LDHRFPFYDN  325 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~-~~e~LPf~d~  325 (418)
                      .+-+.|.+.+|.  +|||||||+|..++.|++..-.|+  +++..+...+.|+++    |+  +.+.++ ....+| +..
T Consensus        63 ~m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~~V~--siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~~a  137 (209)
T COG2518          63 RMLQLLELKPGD--RVLEIGTGSGYQAAVLARLVGRVV--SIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-EEA  137 (209)
T ss_pred             HHHHHhCCCCCC--eEEEECCCchHHHHHHHHHhCeEE--EEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-CCC
Confidence            455566777774  999999999999999999844554  368888888877653    44  334444 334443 236


Q ss_pred             ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      .||.|+.+.......  +       -+.+-|||||++++-.
T Consensus       138 PyD~I~Vtaaa~~vP--~-------~Ll~QL~~gGrlv~Pv  169 (209)
T COG2518         138 PYDRIIVTAAAPEVP--E-------ALLDQLKPGGRLVIPV  169 (209)
T ss_pred             CcCEEEEeeccCCCC--H-------HHHHhcccCCEEEEEE
Confidence            799999988776553  2       3455799999997743

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.16  E-value=4.3e-06  Score=92.63  Aligned_cols=120  Identities=18%  Similarity=0.176  Sum_probs=77.4

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCC----ceeecccCC-CCCCCCccceEEecC-c
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLF----PLYLSLDHR-FPFYDNVFDLVHASS-G  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli----~~~~~~~e~-LPf~d~sFDlV~s~~-~  335 (418)
                      ++|||+|||+|.++..++..|..-| +++|.++.+++.|++    .|+.    .++.+++.+ +.-..++||+|++.= .
T Consensus       540 ~rVLDlf~gtG~~sl~aa~~Ga~~V-~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~  618 (702)
T PRK11783        540 KDFLNLFAYTGTASVHAALGGAKST-TTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT  618 (702)
T ss_pred             CeEEEcCCCCCHHHHHHHHCCCCEE-EEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence            5899999999999999998875422 358999999987655    3442    234444322 111257899999851 1


Q ss_pred             Cc-------CCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675          336 LD-------VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL  390 (418)
Q Consensus       336 L~-------~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l  390 (418)
                      +.       .+....+.+.++..+.++|+|||.++++.-...-..    -...+...|++..
T Consensus       619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~----~~~~~~~~g~~~~  676 (702)
T PRK11783        619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKM----DEEGLAKLGLKAE  676 (702)
T ss_pred             CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCh----hHHHHHhCCCeEE
Confidence            11       111123456788899999999999987654332222    1455667777644

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.15  E-value=3.7e-06  Score=86.36  Aligned_cols=101  Identities=24%  Similarity=0.252  Sum_probs=76.3

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCccceEE
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNVFDLVH  331 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~sFDlV~  331 (418)
                      ..++.  .++|+|||.|....+.+... ..+.  ++|.++.++..+.+    .++   ..+...+....||++++||.|.
T Consensus       108 ~~~~~--~~~~~~~g~~~~~~~i~~f~~~~~~--Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~  183 (364)
T KOG1269|consen  108 CFPGS--KVLDVGTGVGGPSRYIAVFKKAGVV--GLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVR  183 (364)
T ss_pred             Ccccc--cccccCcCcCchhHHHHHhccCCcc--CCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEE
Confidence            45554  79999999999998888764 3333  46777765543322    121   2335578889999999999999


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +..+..|..+..   .++.|++||++|||+++..++
T Consensus       184 ~ld~~~~~~~~~---~~y~Ei~rv~kpGG~~i~~e~  216 (364)
T KOG1269|consen  184 FLEVVCHAPDLE---KVYAEIYRVLKPGGLFIVKEW  216 (364)
T ss_pred             EEeecccCCcHH---HHHHHHhcccCCCceEEeHHH
Confidence            999999887655   899999999999999866554

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.15  E-value=6.5e-06  Score=77.49  Aligned_cols=118  Identities=18%  Similarity=0.254  Sum_probs=71.3

Q ss_pred             eEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHH----HHHHcCCCce--eecccCC-CC--CCCCccceEEecCc
Q 037675          267 IGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSE----FIAARGLFPL--YLSLDHR-FP--FYDNVFDLVHASSG  335 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~----~a~eRGli~~--~~~~~e~-LP--f~d~sFDlV~s~~~  335 (418)
                      .+||||||.|.|...+|...  ...+  ++|+....+.    .+.++++..+  +.+++.. ++  ++++++|.|+...-
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~i--GiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP   97 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFI--GIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP   97 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEE--EEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEE--EEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence            89999999999999999873  5554  4788876554    3445566443  3345444 22  46799999997532


Q ss_pred             CcCCCChh------HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHH--cCcEEE
Q 037675          336 LDVGGQPE------KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIER--FGYKKL  390 (418)
Q Consensus       336 L~~~~~~~------~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~--~Gfk~l  390 (418)
                      = +|....      --..+|.++.|+|||||.+.+..   +.++..+...+.++.  -+|+.+
T Consensus        98 D-PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T---D~~~y~~~~~~~~~~~~~~f~~~  156 (195)
T PF02390_consen   98 D-PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT---DVEEYAEWMLEQFEESHPGFENI  156 (195)
T ss_dssp             -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE---S-HHHHHHHHHHHHHHSTTEEEE
T ss_pred             C-CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe---CCHHHHHHHHHHHHhcCcCeEEc
Confidence            2 222110      11378999999999999985532   223333334445555  367655

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.14  E-value=1.3e-05  Score=77.76  Aligned_cols=100  Identities=18%  Similarity=0.261  Sum_probs=69.6

Q ss_pred             CeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCC--------Cc-------------e-----------
Q 037675          266 RIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGL--------FP-------------L-----------  312 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGl--------i~-------------~-----------  312 (418)
                      .-+|||||..|.+++.+++. +..-| .++|+++..++.|++.--        +.             +           
T Consensus        60 ~~~LDIGCNsG~lt~~iak~F~~r~i-LGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t  138 (288)
T KOG2899|consen   60 KQALDIGCNSGFLTLSIAKDFGPRRI-LGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT  138 (288)
T ss_pred             ceeEeccCCcchhHHHHHHhhcccee-eEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence            47999999999999999987 54443 468999999988876311        11             0           


Q ss_pred             --------------eecccCCCCCCCCccceEEecCc---Cc-CCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          313 --------------YLSLDHRFPFYDNVFDLVHASSG---LD-VGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       313 --------------~~~~~e~LPf~d~sFDlV~s~~~---L~-~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                                    +....+-+-+..+.||+|.|..+   +| .|++ +++..++..+.|.|.|||+|++.--
T Consensus       139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD-~GL~~ff~kis~ll~pgGiLvvEPQ  210 (288)
T KOG2899|consen  139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGD-DGLRRFFRKISSLLHPGGILVVEPQ  210 (288)
T ss_pred             ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEeccccc-HHHHHHHHHHHHhhCcCcEEEEcCC
Confidence                          00000111234567999999533   33 4655 6799999999999999999977643

>PLN02672 methionine S-methyltransferase

Probab=98.10  E-value=1.9e-05  Score=90.67  Aligned_cols=124  Identities=16%  Similarity=0.162  Sum_probs=80.2

Q ss_pred             CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc----CC------------------Cceeeccc-CCC
Q 037675          266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR----GL------------------FPLYLSLD-HRF  320 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR----Gl------------------i~~~~~~~-e~L  320 (418)
                      .+|||+|||+|..+..++++.  ..+  +++|+++.+++.|.+.    ++                  +.++.++. +.+
T Consensus       120 ~~VLDlG~GSG~Iai~La~~~~~~~v--~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        120 KTVAELGCGNGWISIAIAEKWLPSKV--YGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             CEEEEEecchHHHHHHHHHHCCCCEE--EEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            479999999999999998863  344  4589999999876432    11                  23344433 222


Q ss_pred             CCCCCccceEEec--CcCcC------------C-----------C-------Chh---HHHHHHHHhhccccCCcEEEEE
Q 037675          321 PFYDNVFDLVHAS--SGLDV------------G-----------G-------QPE---KLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       321 Pf~d~sFDlV~s~--~~L~~------------~-----------~-------~~~---~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      +-....||+|+++  ++...            -           .       +.+   -...++.+..++|||||.+++.
T Consensus       198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE  277 (1082)
T PLN02672        198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN  277 (1082)
T ss_pred             cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            1112369999996  22110            0           0       011   1257888999999999999887


Q ss_pred             ecccCchhHHHHHH-HHHHHcCcEEEE-EEEc
Q 037675          366 NFYCANDEKKSALT-RLIERFGYKKLK-WVVG  395 (418)
Q Consensus       366 ~~~~~~ee~~~~~~-~l~~~~Gfk~l~-W~~~  395 (418)
                      .-+.+++.    +. +++++.||+.+. |...
T Consensus       278 iG~~q~~~----v~~~l~~~~gf~~~~~~~~~  305 (1082)
T PLN02672        278 MGGRPGQA----VCERLFERRGFRITKLWQTK  305 (1082)
T ss_pred             ECccHHHH----HHHHHHHHCCCCeeEEeeeh
Confidence            65544443    55 578889998865 7663

>PHA03412 putative methyltransferase; Provisional

Probab=98.09  E-value=1.7e-05  Score=77.13  Aligned_cols=93  Identities=14%  Similarity=0.116  Sum_probs=63.8

Q ss_pred             CeEEEECCccChHHHHHhhc-----CcEEEEeccCCCHHhHHHHHHcC-CCceeecccCCCCCCCCccceEEecCcCc--
Q 037675          266 RIGFDIGGGSGTFAARMAER-----NVTVITNTLNVDAPYSEFIAARG-LFPLYLSLDHRFPFYDNVFDLVHASSGLD--  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-----gV~vv~~alD~s~~~l~~a~eRG-li~~~~~~~e~LPf~d~sFDlV~s~~~L~--  337 (418)
                      .+|||+|||+|.++..++++     ...+  .++|+++.+++.|++.. -+.+..++....++ +++||+|+++==+.  
T Consensus        51 grVLDlG~GSG~Lalala~~~~~~~~~~V--~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~  127 (241)
T PHA03412         51 GSVVDLCAGIGGLSFAMVHMMMYAKPREI--VCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI  127 (241)
T ss_pred             CEEEEccChHHHHHHHHHHhcccCCCcEE--EEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence            48999999999999888764     2333  35799999999888652 13556666666554 67899999972111  


Q ss_pred             CCCC-------hhHHHHHHHHhhccccCCcE
Q 037675          338 VGGQ-------PEKLEFLMFDFDRILRAGGL  361 (418)
Q Consensus       338 ~~~~-------~~~le~~L~Ei~RVLRPGG~  361 (418)
                      ...+       ......++....|.++||+.
T Consensus       128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             cccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            1111       12234688888898888775

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.07  E-value=2.3e-06  Score=84.55  Aligned_cols=99  Identities=18%  Similarity=0.252  Sum_probs=78.1

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcC
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      ...|.  .++|+|||.|-.   +.... ..+  ++.|.+...+..++..|...+...++-.+|+.+.+||.+.+..++||
T Consensus        43 ~~~gs--v~~d~gCGngky---~~~~p~~~~--ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihh  115 (293)
T KOG1331|consen   43 QPTGS--VGLDVGCGNGKY---LGVNPLCLI--IGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHH  115 (293)
T ss_pred             cCCcc--eeeecccCCccc---CcCCCccee--eecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhh
Confidence            44454  799999999943   22222 233  34798888888777777644666889999999999999999999999


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      +.....-+.++.|+.|+|||||...|.
T Consensus       116 lsT~~RR~~~l~e~~r~lrpgg~~lvy  142 (293)
T KOG1331|consen  116 LSTRERRERALEELLRVLRPGGNALVY  142 (293)
T ss_pred             hhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence            988888889999999999999976443

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.06  E-value=6e-06  Score=83.64  Aligned_cols=96  Identities=15%  Similarity=0.212  Sum_probs=67.5

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHH---hHHHHHHcCC---CceeecccCCCCCCCCccceEEecCcCcCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAP---YSEFIAARGL---FPLYLSLDHRFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~---~l~~a~eRGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      ++|||||||||.++..-++.|..-| .++|.+.-   ..+.+...++   +.++.+..|.+..|-...|+|++-+.=...
T Consensus        62 K~VlDVGcGtGILS~F~akAGA~~V-~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~L  140 (346)
T KOG1499|consen   62 KTVLDVGCGTGILSMFAAKAGARKV-YAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFL  140 (346)
T ss_pred             CEEEEcCCCccHHHHHHHHhCcceE-EEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHH
Confidence            5899999999999999888884443 45676642   2245666665   344557777766668899999995432221


Q ss_pred             CChhHHHHHHHHhhccccCCcEE
Q 037675          340 GQPEKLEFLMFDFDRILRAGGLF  362 (418)
Q Consensus       340 ~~~~~le~~L~Ei~RVLRPGG~~  362 (418)
                      --...+..+|.-=++.|+|||.+
T Consensus       141 l~EsMldsVl~ARdkwL~~~G~i  163 (346)
T KOG1499|consen  141 LYESMLDSVLYARDKWLKEGGLI  163 (346)
T ss_pred             HHhhhhhhhhhhhhhccCCCceE
Confidence            11234668888889999999976

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.05  E-value=9.8e-06  Score=81.31  Aligned_cols=94  Identities=16%  Similarity=0.151  Sum_probs=65.0

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCCC-CCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFPF-YDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LPf-~d~sFDlV~s~~~L~~  338 (418)
                      .+|||+|||+|.++..+++++..++  ++|.++.+++.|++    .|+  +.++.++++.+.. .++.||+|++.     
T Consensus       175 ~~VLDl~cG~G~~sl~la~~~~~V~--gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d-----  247 (315)
T PRK03522        175 RSMWDLFCGVGGFGLHCATPGMQLT--GIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN-----  247 (315)
T ss_pred             CEEEEccCCCCHHHHHHHhcCCEEE--EEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC-----
Confidence            5899999999999999999886664  58999999987654    354  2355566655432 34679999975     


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                       .++.++..-+.++..-++|++.++++.-
T Consensus       248 -PPr~G~~~~~~~~l~~~~~~~ivyvsc~  275 (315)
T PRK03522        248 -PPRRGIGKELCDYLSQMAPRFILYSSCN  275 (315)
T ss_pred             -CCCCCccHHHHHHHHHcCCCeEEEEECC
Confidence             1222333344455555789988877653

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.03  E-value=1e-05  Score=74.11  Aligned_cols=140  Identities=20%  Similarity=0.286  Sum_probs=72.5

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHcCCCceeec----------ccCCCCCCCCc
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAARGLFPLYLS----------LDHRFPFYDNV  326 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eRGli~~~~~----------~~e~LPf~d~s  326 (418)
                      +..+...+|||+||++|+|+.++.+++   -.+  .++|+.+..-    -++. ..+.+          ..+.++-..+.
T Consensus        19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v--~avDl~~~~~----~~~~-~~i~~d~~~~~~~~~i~~~~~~~~~~   91 (181)
T PF01728_consen   19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRV--VAVDLGPMDP----LQNV-SFIQGDITNPENIKDIRKLLPESGEK   91 (181)
T ss_dssp             S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEE--EEEESSSTGS-----TTE-EBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred             CCcccccEEEEcCCcccceeeeeeecccccceE--EEEecccccc----ccce-eeeecccchhhHHHhhhhhccccccC
Confidence            445556799999999999999999987   334  3566643200    0111 11111          11112212378


Q ss_pred             cceEEecCcCcCCCC-----hhHHH---HHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccC
Q 037675          327 FDLVHASSGLDVGGQ-----PEKLE---FLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKG  398 (418)
Q Consensus       327 FDlV~s~~~L~~~~~-----~~~le---~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~  398 (418)
                      ||+|+|..+.....+     ...++   ..+.-+...|||||.+++-.+.....  . .+...++. +|+.+++......
T Consensus        92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~--~-~~~~~l~~-~F~~v~~~Kp~~s  167 (181)
T PF01728_consen   92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI--E-ELIYLLKR-CFSKVKIVKPPSS  167 (181)
T ss_dssp             ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS--H-HHHHHHHH-HHHHEEEEE-TTS
T ss_pred             cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH--H-HHHHHHHh-CCeEEEEEECcCC
Confidence            999999764432221     11222   23333446699999987766543221  2 23333333 3666776654444


Q ss_pred             CCCccceEEEEE
Q 037675          399 ETGKSEVYLSAV  410 (418)
Q Consensus       399 d~~~~e~~l~Ai  410 (418)
                      .++.+|.|+.+.
T Consensus       168 r~~s~E~Ylv~~  179 (181)
T PF01728_consen  168 RSESSEEYLVCR  179 (181)
T ss_dssp             BTTCBEEEEESE
T ss_pred             CCCccEEEEEEc
Confidence            456678888754

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.02  E-value=3.8e-05  Score=79.81  Aligned_cols=120  Identities=10%  Similarity=0.040  Sum_probs=73.6

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHH----cCCC----ceeecccCCC----CCCCCccceEEe
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAA----RGLF----PLYLSLDHRF----PFYDNVFDLVHA  332 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~e----RGli----~~~~~~~e~L----Pf~d~sFDlV~s  332 (418)
                      ++|||+|||+|.|+..++..+. .++  ++|.++.+++.+++    .|+-    .++.+++..+    .-..++||+|++
T Consensus       222 ~rVLDlfsgtG~~~l~aa~~ga~~V~--~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil  299 (396)
T PRK15128        222 KRVLNCFSYTGGFAVSALMGGCSQVV--SVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_pred             CeEEEeccCCCHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence            5899999999999987666654 343  57999998877654    3441    2344544332    113568999998


Q ss_pred             cCc-CcCCC-----ChhHHHHHHHHhhccccCCcEEEEEecc--cCchhHHHHHHHHHHHcCc
Q 037675          333 SSG-LDVGG-----QPEKLEFLMFDFDRILRAGGLFWLDNFY--CANDEKKSALTRLIERFGY  387 (418)
Q Consensus       333 ~~~-L~~~~-----~~~~le~~L~Ei~RVLRPGG~~ii~~~~--~~~ee~~~~~~~l~~~~Gf  387 (418)
                      .-= +....     ...+.+.++....++|||||+++.....  ...++..+.+.+.....|-
T Consensus       300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~  362 (396)
T PRK15128        300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGR  362 (396)
T ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence            621 11110     0023445666788999999998765432  2234455555555665544

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.00  E-value=1.5e-05  Score=77.09  Aligned_cols=118  Identities=14%  Similarity=0.071  Sum_probs=69.8

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-Cceee-cccCC-----CCCCCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-FPLYL-SLDHR-----FPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-i~~~~-~~~e~-----LPf~d~sFDlV~s~~~L~~  338 (418)
                      .+|||+|||||.|+..|+++|+.-+ +++|++..|+........ +-.+. .+++.     ++..-..||+++++..   
T Consensus        77 ~~vlDiG~gtG~~t~~l~~~ga~~v-~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~---  152 (228)
T TIGR00478        77 KIVLDVGSSTGGFTDCALQKGAKEV-YGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI---  152 (228)
T ss_pred             CEEEEcccCCCHHHHHHHHcCCCEE-EEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH---
Confidence            4899999999999999999986443 468999988865333322 11111 22322     2211136676665443   


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEE-ec-ccCc------------hhH----HHHHHHHHHHcCcEEEEEEEcc
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLD-NF-YCAN------------DEK----KSALTRLIERFGYKKLKWVVGE  396 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~-~~-~~~~------------ee~----~~~~~~l~~~~Gfk~l~W~~~~  396 (418)
                              .+|..+.+.|+| |.+++. -| |-.+            +..    -+.+...+...||+.+.+...+
T Consensus       153 --------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  219 (228)
T TIGR00478       153 --------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIFSL  219 (228)
T ss_pred             --------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEECC
Confidence                    346688999999 766443 22 1111            111    1234456677888877655433

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.99  E-value=3.5e-05  Score=72.80  Aligned_cols=101  Identities=20%  Similarity=0.182  Sum_probs=62.0

Q ss_pred             CCCeEEEECCccC----hHHHHHhhc-----C--cEEEEeccCCCHHhHHHHHH--------cCCCc-------------
Q 037675          264 GIRIGFDIGGGSG----TFAARMAER-----N--VTVITNTLNVDAPYSEFIAA--------RGLFP-------------  311 (418)
Q Consensus       264 ~~r~VLDvGCGtG----~faa~La~~-----g--V~vv~~alD~s~~~l~~a~e--------RGli~-------------  311 (418)
                      ..-+|..+||++|    ++|..|.+.     +  +.++  |.|+++..++.|++        +++.+             
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~--atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~  108 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRIL--ATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGG  108 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEE--EEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CC
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEE--EEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCC
Confidence            3448999999999    566666661     2  4443  57999999987755        12210             


Q ss_pred             -------------eeecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          312 -------------LYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       312 -------------~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                                   +...+....+.+.+.||+|+|.++|..... +.-+.++..+.+.|+|||++++...
T Consensus       109 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~-~~~~~vl~~l~~~L~pgG~L~lG~s  176 (196)
T PF01739_consen  109 GYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDP-ETQQRVLRRLHRSLKPGGYLFLGHS  176 (196)
T ss_dssp             CTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-H-HHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred             ceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCH-HHHHHHHHHHHHHcCCCCEEEEecC
Confidence                         001112223445678999999999998864 4457999999999999999988653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.99  E-value=0.0002  Score=76.11  Aligned_cols=153  Identities=16%  Similarity=0.138  Sum_probs=92.2

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHH----HcCCCcee--ecccCCCC-CCCCccc
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIA----ARGLFPLY--LSLDHRFP-FYDNVFD  328 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~----eRGli~~~--~~~~e~LP-f~d~sFD  328 (418)
                      ...+|  .+|||++||.|+=+.++++. +  -.+  ++.|+++..++...    .-|+..+.  ..+...++ ..++.||
T Consensus       110 ~~~pg--~~VLD~CAAPGgKTt~la~~l~~~g~l--vA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD  185 (470)
T PRK11933        110 DDNAP--QRVLDMAAAPGSKTTQIAALMNNQGAI--VANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFD  185 (470)
T ss_pred             CCCCC--CEEEEeCCCccHHHHHHHHHcCCCCEE--EEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcC
Confidence            33455  48999999999988887765 1  233  35788876665433    33663322  23444442 3456899


Q ss_pred             eEE----ecCcCcCCCChhH--------H-------HHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcC-cE
Q 037675          329 LVH----ASSGLDVGGQPEK--------L-------EFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFG-YK  388 (418)
Q Consensus       329 lV~----s~~~L~~~~~~~~--------l-------e~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~G-fk  388 (418)
                      .|+    |++.=..-.+++.        +       ..+|....+.|||||+++.+.-....+|.++.+..++++.. +.
T Consensus       186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~~~~  265 (470)
T PRK11933        186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAV  265 (470)
T ss_pred             eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCcE
Confidence            999    5532111112211        1       46788899999999999887665556676677777777753 22


Q ss_pred             EEE-----EEEcc---------cCCC--CccceEEEEEEEcCC
Q 037675          389 KLK-----WVVGE---------KGET--GKSEVYLSAVLQKPV  415 (418)
Q Consensus       389 ~l~-----W~~~~---------k~d~--~~~e~~l~Ai~qKP~  415 (418)
                      .+.     |....         +.-+  .+.+.++.|.++|..
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFiA~lrk~~  308 (470)
T PRK11933        266 EFEPLGDLFPGAEKALTEEGFLHVFPQIYDSEGFFVARLRKTA  308 (470)
T ss_pred             EeccccccccccccccCCCCeEEECCCCCCCcceeeEEEEecC
Confidence            121     11100         0001  246889999999864

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.89  E-value=7.2e-05  Score=73.14  Aligned_cols=124  Identities=19%  Similarity=0.179  Sum_probs=76.0

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPF  322 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf  322 (418)
                      +|-..+++.+|.  +||+.|.|+|+++.+|+.. +  -.+  .+.|.++...+.|++    .|+   +.+.+.+...--|
T Consensus        31 ~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v--~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~  106 (247)
T PF08704_consen   31 YILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGHV--YTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF  106 (247)
T ss_dssp             HHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEE--EEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred             HHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeEE--EccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence            344456788885  8999999999999999864 2  233  246999988887765    354   3344544433223


Q ss_pred             C---CCccceEEecCcCcCCCChhHHHHHHHHhhccc-cCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          323 Y---DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRIL-RAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       323 ~---d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVL-RPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      .   ++.||.|+... -.+|       .++..+.++| ||||+++.-.|.  -++..+ ....++..||..+.
T Consensus       107 ~~~~~~~~DavfLDl-p~Pw-------~~i~~~~~~L~~~gG~i~~fsP~--ieQv~~-~~~~L~~~gf~~i~  168 (247)
T PF08704_consen  107 DEELESDFDAVFLDL-PDPW-------EAIPHAKRALKKPGGRICCFSPC--IEQVQK-TVEALREHGFTDIE  168 (247)
T ss_dssp             STT-TTSEEEEEEES-SSGG-------GGHHHHHHHE-EEEEEEEEEESS--HHHHHH-HHHHHHHTTEEEEE
T ss_pred             cccccCcccEEEEeC-CCHH-------HHHHHHHHHHhcCCceEEEECCC--HHHHHH-HHHHHHHCCCeeeE
Confidence            2   47899998532 2233       6777999999 999988554332  233333 44556678998764

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.88  E-value=0.00019  Score=71.09  Aligned_cols=141  Identities=18%  Similarity=0.174  Sum_probs=91.6

Q ss_pred             CcHHHHHHHHccC-----CCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhH---HHHHHc----C---CCcee
Q 037675          249 KNDFLIDDVLALG-----SGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYS---EFIAAR----G---LFPLY  313 (418)
Q Consensus       249 ~y~~~I~~lL~l~-----~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l---~~a~eR----G---li~~~  313 (418)
                      -|..+++++-.+-     ....-+||==|||.|+++..++.+|..+.+  .+.|--|+   .++...    +   +.|+.
T Consensus        36 ~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~g--nE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~  113 (270)
T PF07942_consen   36 CYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQG--NEFSYFMLLASNFILNHCSQPNQFTIYPFV  113 (270)
T ss_pred             HHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEE--EEchHHHHHHHHHHHcccCCCCcEEEecce
Confidence            3666666654331     122347999999999999999999988865  47776665   344332    1   11221


Q ss_pred             e------------------------------------cccCCCCCCC---CccceEEecCcCcCCCChhHHHHHHHHhhc
Q 037675          314 L------------------------------------SLDHRFPFYD---NVFDLVHASSGLDVGGQPEKLEFLMFDFDR  354 (418)
Q Consensus       314 ~------------------------------------~~~e~LPf~d---~sFDlV~s~~~L~~~~~~~~le~~L~Ei~R  354 (418)
                      +                                    |+...+..++   ++||.|++...+.-   -.++-.+|..|.+
T Consensus       114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT---A~Ni~~Yi~tI~~  190 (270)
T PF07942_consen  114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT---AENIIEYIETIEH  190 (270)
T ss_pred             ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec---hHHHHHHHHHHHH
Confidence            1                                    1222222223   69999998754443   3456799999999


Q ss_pred             cccCCcEEEEEec--ccCc----------hhHHHHHHHHHHHcCcEEEEEEE
Q 037675          355 ILRAGGLFWLDNF--YCAN----------DEKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       355 VLRPGG~~ii~~~--~~~~----------ee~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      +|||||++|=-+|  +...          +-..+++..+++.+||+.++.+.
T Consensus       191 lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  191 LLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             HhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence            9999997765565  1111          11247799999999999988666

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.88  E-value=0.00016  Score=75.55  Aligned_cols=116  Identities=15%  Similarity=0.183  Sum_probs=72.8

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCC----CCCCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHR----FPFYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~----LPf~d~sFDlV~s~~~  335 (418)
                      .+|||+|||+|.++..|++..-.++  ++|.++.+++.|++    .|+  +.++.+++++    +++.+++||+|+..--
T Consensus       294 ~~vLDl~cG~G~~sl~la~~~~~V~--~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP  371 (431)
T TIGR00479       294 ELVVDAYCGVGTFTLPLAKQAKSVV--GIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP  371 (431)
T ss_pred             CEEEEcCCCcCHHHHHHHHhCCEEE--EEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC
Confidence            4899999999999999998765554  57999999987665    343  2345555433    3345678999996321


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEE
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      -...     ...++.++.+ ++|++.++++   |+...+...+ ..+...||+..+..
T Consensus       372 r~G~-----~~~~l~~l~~-l~~~~ivyvs---c~p~tlard~-~~l~~~gy~~~~~~  419 (431)
T TIGR00479       372 RKGC-----AAEVLRTIIE-LKPERIVYVS---CNPATLARDL-EFLCKEGYGITWVQ  419 (431)
T ss_pred             CCCC-----CHHHHHHHHh-cCCCEEEEEc---CCHHHHHHHH-HHHHHCCeeEEEEE
Confidence            1110     1255666554 8999988776   3322222222 33456688755433

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK04148 hypothetical protein; Provisional

Probab=97.87  E-value=9.5e-05  Score=65.99  Aligned_cols=92  Identities=13%  Similarity=0.163  Sum_probs=66.1

Q ss_pred             CCeEEEECCccCh-HHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCC-CCccceEEecCcCcCCCCh
Q 037675          265 IRIGFDIGGGSGT-FAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFY-DNVFDLVHASSGLDVGGQP  342 (418)
Q Consensus       265 ~r~VLDvGCGtG~-faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~-d~sFDlV~s~~~L~~~~~~  342 (418)
                      .+++||||||+|. ++..|++.|..|+  ++|+++..++.+++++. .++.++.-+-++. -+.+|+|++.+      ++
T Consensus        17 ~~kileIG~GfG~~vA~~L~~~G~~Vi--aIDi~~~aV~~a~~~~~-~~v~dDlf~p~~~~y~~a~liysir------pp   87 (134)
T PRK04148         17 NKKIVELGIGFYFKVAKKLKESGFDVI--VIDINEKAVEKAKKLGL-NAFVDDLFNPNLEIYKNAKLIYSIR------PP   87 (134)
T ss_pred             CCEEEEEEecCCHHHHHHHHHCCCEEE--EEECCHHHHHHHHHhCC-eEEECcCCCCCHHHHhcCCEEEEeC------CC
Confidence            3689999999995 9999999998886  58999999999999987 7777654433322 35699999855      33


Q ss_pred             hHHHHHHHHhhccccCCcEEEEEec
Q 037675          343 EKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       343 ~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .++...+.++.+-+.  .-++|...
T Consensus        88 ~el~~~~~~la~~~~--~~~~i~~l  110 (134)
T PRK04148         88 RDLQPFILELAKKIN--VPLIIKPL  110 (134)
T ss_pred             HHHHHHHHHHHHHcC--CCEEEEcC
Confidence            445566667766543  44555544

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.86  E-value=3.2e-05  Score=76.11  Aligned_cols=72  Identities=17%  Similarity=0.161  Sum_probs=54.4

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC---CCceeecccCCCCCCCCccceEEecC
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG---LFPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG---li~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      .+..+  .+|||+|||+|.++..|++++..++  ++|+++.|++.++++.   -+.+++++...+++++-.+|.|+++-
T Consensus        39 ~~~~~--~~VLEiG~G~G~lt~~L~~~~~~v~--avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~Nl  113 (272)
T PRK00274         39 GPQPG--DNVLEIGPGLGALTEPLLERAAKVT--AVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANL  113 (272)
T ss_pred             CCCCc--CeEEEeCCCccHHHHHHHHhCCcEE--EEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeC
Confidence            34444  4899999999999999999875553  5799999999887752   23566788888887654368888764

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.82  E-value=5.7e-05  Score=73.72  Aligned_cols=74  Identities=19%  Similarity=0.329  Sum_probs=55.7

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCCceeecccCCCCCCCCccceEEecC
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLFPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      .+.++  .+|||||||+|.++..|++++..++  ++|+++.+++.+.++    +-+.++.+++..+++++  ||.|+++-
T Consensus        26 ~~~~~--~~VLEIG~G~G~lt~~L~~~~~~v~--~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~--~d~Vv~Nl   99 (258)
T PRK14896         26 EDTDG--DPVLEIGPGKGALTDELAKRAKKVY--AIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPE--FNKVVSNL   99 (258)
T ss_pred             CCCCc--CeEEEEeCccCHHHHHHHHhCCEEE--EEECCHHHHHHHHHHhccCCCEEEEEeccccCCchh--ceEEEEcC
Confidence            34444  5899999999999999999876554  579999999887764    22345667888887754  89999976


Q ss_pred             cCcC
Q 037675          335 GLDV  338 (418)
Q Consensus       335 ~L~~  338 (418)
                      -++.
T Consensus       100 Py~i  103 (258)
T PRK14896        100 PYQI  103 (258)
T ss_pred             Cccc
Confidence            6543

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.82  E-value=0.00019  Score=73.08  Aligned_cols=120  Identities=19%  Similarity=0.214  Sum_probs=87.0

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCCc--eeec-ccCCCCCCCCccceEEe
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLFP--LYLS-LDHRFPFYDNVFDLVHA  332 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli~--~~~~-~~e~LPf~d~sFDlV~s  332 (418)
                      ...|+  +|||==||||++.....=.|..++|  .|++..|++-|+..    |+-.  ++.. ++..+|+++++||.|.+
T Consensus       195 v~~G~--~vlDPFcGTGgiLiEagl~G~~viG--~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIat  270 (347)
T COG1041         195 VKRGE--LVLDPFCGTGGILIEAGLMGARVIG--SDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIAT  270 (347)
T ss_pred             cccCC--EeecCcCCccHHHHhhhhcCceEee--cchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEe
Confidence            45564  8999999999999888778999875  69999999876543    3222  2334 89999999999999999


Q ss_pred             c--CcCc----CCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          333 S--SGLD----VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       333 ~--~~L~----~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      .  .-..    ...-..-.+.+|.++.++||+||++++..+...        ...++.+||+.+.
T Consensus       271 DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~--------~~~~~~~~f~v~~  327 (347)
T COG1041         271 DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDP--------RHELEELGFKVLG  327 (347)
T ss_pred             cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcc--------hhhHhhcCceEEE
Confidence            4  1111    111123467899999999999999988777322        2225677888765

>PLN02476 O-methyltransferase

Probab=97.81  E-value=7.3e-05  Score=74.30  Aligned_cols=108  Identities=12%  Similarity=0.136  Sum_probs=72.0

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC---Cceeeccc-CCCCC
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLD-HRFPF  322 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~-e~LPf  322 (418)
                      +..++.+..  .++|||+|+|+|..+..|+..   +-.+  +++|.++...+.|++    .|+   +.+..+++ +-|+-
T Consensus       110 L~~L~~~~~--ak~VLEIGT~tGySal~lA~al~~~G~V--~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~  185 (278)
T PLN02476        110 LAMLVQILG--AERCIEVGVYTGYSSLAVALVLPESGCL--VACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKS  185 (278)
T ss_pred             HHHHHHhcC--CCeEEEecCCCCHHHHHHHHhCCCCCEE--EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence            333444443  359999999999999988863   2223  347888887776643    455   33444533 22221


Q ss_pred             -----CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc
Q 037675          323 -----YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN  371 (418)
Q Consensus       323 -----~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~  371 (418)
                           .+++||+|+...      ++.....++..+.+.|||||.+++++-.+.+
T Consensus       186 l~~~~~~~~FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G  233 (278)
T PLN02476        186 MIQNGEGSSYDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHG  233 (278)
T ss_pred             HHhcccCCCCCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCC
Confidence                 246899999643      2345568899999999999999888775544

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.81  E-value=0.00013  Score=69.96  Aligned_cols=119  Identities=15%  Similarity=0.224  Sum_probs=80.8

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCC---CCCccceEEecCcCcCCCCh
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPF---YDNVFDLVHASSGLDVGGQP  342 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf---~d~sFDlV~s~~~L~~~~~~  342 (418)
                      -++|||||=....+..  ..+..-| ..+|+++.      +.   .+...+....|.   +++.||+|.++.+|...+++
T Consensus        53 lrlLEVGals~~N~~s--~~~~fdv-t~IDLns~------~~---~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p  120 (219)
T PF11968_consen   53 LRLLEVGALSTDNACS--TSGWFDV-TRIDLNSQ------HP---GILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP  120 (219)
T ss_pred             ceEEeecccCCCCccc--ccCceee-EEeecCCC------CC---CceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence            3899999986554332  2221111 34677541      11   223334444554   36799999999999999999


Q ss_pred             hHHHHHHHHhhccccCCcE-----EEEEec-ccCc---hhHHHHHHHHHHHcCcEEEEEEEcc
Q 037675          343 EKLEFLMFDFDRILRAGGL-----FWLDNF-YCAN---DEKKSALTRLIERFGYKKLKWVVGE  396 (418)
Q Consensus       343 ~~le~~L~Ei~RVLRPGG~-----~ii~~~-~~~~---ee~~~~~~~l~~~~Gfk~l~W~~~~  396 (418)
                      ..-...+....+.|||+|.     ++|.-| -|..   .-..+.|..+++.+||..++-+...
T Consensus       121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~  183 (219)
T PF11968_consen  121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSK  183 (219)
T ss_pred             HHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecC
Confidence            8888999999999999999     766655 2321   1233568999999999998754433

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.75  E-value=5.6e-05  Score=73.02  Aligned_cols=99  Identities=20%  Similarity=0.188  Sum_probs=64.3

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHH----hHHHHHHcCCCce--eecccCCC-C--CCCCccceEEecCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAP----YSEFIAARGLFPL--YLSLDHRF-P--FYDNVFDLVHASSGL  336 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~----~l~~a~eRGli~~--~~~~~e~L-P--f~d~sFDlV~s~~~L  336 (418)
                      ..+||||||.|.|...+|+++...--+++++...    .++.+.+.|+..+  +..++..+ +  +++++.|-|+...-=
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD  129 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD  129 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence            3799999999999999999863322234677654    3455666777233  33343322 2  356699999975422


Q ss_pred             cCCCCh------hHHHHHHHHhhccccCCcEEEEE
Q 037675          337 DVGGQP------EKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       337 ~~~~~~------~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                       +|...      ---..++.++.|+|||||.+.+.
T Consensus       130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a  163 (227)
T COG0220         130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA  163 (227)
T ss_pred             -CCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence             23211      11237899999999999999654

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.74  E-value=0.0005  Score=70.87  Aligned_cols=111  Identities=13%  Similarity=0.126  Sum_probs=69.2

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCC-CCCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFP-FYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LP-f~d~sFDlV~s~~~L~~  338 (418)
                      ++|||+|||+|.++..++.++-.++  ++|.++.+++.|++    .++  +.++.++.+.+. -..+.||+|+..=    
T Consensus       235 ~~vLDL~cG~G~~~l~la~~~~~v~--~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DP----  308 (374)
T TIGR02085       235 TQMWDLFCGVGGFGLHCAGPDTQLT--GIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNP----  308 (374)
T ss_pred             CEEEEccCCccHHHHHHhhcCCeEE--EEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECC----
Confidence            5899999999999999998876654  57999988876654    343  234445544332 1124699998751    


Q ss_pred             CCChhH-HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          339 GGQPEK-LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       339 ~~~~~~-le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                        ++.+ .+.++..+. -++|++.++++.   +...+...+..+   .||+..+
T Consensus       309 --Pr~G~~~~~l~~l~-~~~p~~ivyvsc---~p~TlaRDl~~L---~gy~l~~  353 (374)
T TIGR02085       309 --PRRGIGKELCDYLS-QMAPKFILYSSC---NAQTMAKDIAEL---SGYQIER  353 (374)
T ss_pred             --CCCCCcHHHHHHHH-hcCCCeEEEEEe---CHHHHHHHHHHh---cCceEEE
Confidence              1111 124444443 489999998874   333333334444   5787554

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.74  E-value=0.00018  Score=69.77  Aligned_cols=69  Identities=14%  Similarity=0.190  Sum_probs=51.0

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCCccc---eEEecCcCc
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDNVFD---LVHASSGLD  337 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~sFD---lV~s~~~L~  337 (418)
                      ..+|||+|||+|.++..|++++..++  ++|.++.+++.+.++-    -+..+.+++..+|++  .||   +|+++--++
T Consensus        30 ~~~VLEiG~G~G~lt~~L~~~~~~v~--~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy~  105 (253)
T TIGR00755        30 GDVVLEIGPGLGALTEPLLKRAKKVT--AIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLPYN  105 (253)
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCCcEE--EEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCChh
Confidence            35899999999999999999875543  4799999998876641    234556788888775  566   777654433

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.73  E-value=0.00018  Score=68.05  Aligned_cols=97  Identities=12%  Similarity=0.079  Sum_probs=59.6

Q ss_pred             CeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHH----cCC--CceeecccCC-CCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHR-FPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~-LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++..++.++ ..+  +++|.++..++.+++    .|+  +.++.+++.. ++...+.||+|++.==+.
T Consensus        55 ~~vLDl~~GsG~l~l~~lsr~a~~V--~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~  132 (199)
T PRK10909         55 ARCLDCFAGSGALGLEALSRYAAGA--TLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR  132 (199)
T ss_pred             CEEEEcCCCccHHHHHHHHcCCCEE--EEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence            489999999999998765565 344  347888887765544    243  2334444332 333355799999853221


Q ss_pred             CCCChhHHHHHHHHhh--ccccCCcEEEEEecc
Q 037675          338 VGGQPEKLEFLMFDFD--RILRAGGLFWLDNFY  368 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~--RVLRPGG~~ii~~~~  368 (418)
                      .    .-.+.++..+.  .+|+|+|.+++++..
T Consensus       133 ~----g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        133 K----GLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             C----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            1    11223444343  358999999888664

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.70  E-value=0.00044  Score=68.98  Aligned_cols=129  Identities=19%  Similarity=0.218  Sum_probs=89.9

Q ss_pred             CCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHH----HHHHcCCCce---eecccCC---CCCCCCccc
Q 037675          262 SGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSE----FIAARGLFPL---YLSLDHR---FPFYDNVFD  328 (418)
Q Consensus       262 ~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~----~a~eRGli~~---~~~~~e~---LPf~d~sFD  328 (418)
                      .|..-+||||.||.|..-.-..+. .  +.-+ .-.|.++.-++    .++++|+-..   ..+++-+   +.--+-..|
T Consensus       133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i-~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~  211 (311)
T PF12147_consen  133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSI-LLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT  211 (311)
T ss_pred             cCCceEEEEeccCCcHHHHHHHHhCCCCCceE-EEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence            354558999999999865444433 2  2221 12788886664    5788998433   3444322   222244579


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc--h-------------------hHHHHHHHHHHHcCc
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN--D-------------------EKKSALTRLIERFGY  387 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--e-------------------e~~~~~~~l~~~~Gf  387 (418)
                      +++.++.+..+.+.+.+...+.-+.+++.|||++|.+.--|+.  +                   ..++++..+++.+||
T Consensus       212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF  291 (311)
T PF12147_consen  212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGF  291 (311)
T ss_pred             EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCC
Confidence            9999999999999888888999999999999999888732221  1                   123678899999999


Q ss_pred             EEEE
Q 037675          388 KKLK  391 (418)
Q Consensus       388 k~l~  391 (418)
                      +++.
T Consensus       292 ~K~~  295 (311)
T PF12147_consen  292 EKID  295 (311)
T ss_pred             chhh
Confidence            9885

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.69  E-value=0.00035  Score=69.17  Aligned_cols=99  Identities=18%  Similarity=0.243  Sum_probs=68.6

Q ss_pred             eEEEECCccChHHHHHhhc-C-cEEEEeccCCCHHhHHHHHHc-------CCCceee-----cccCCCCCCCCccceEEe
Q 037675          267 IGFDIGGGSGTFAARMAER-N-VTVITNTLNVDAPYSEFIAAR-------GLFPLYL-----SLDHRFPFYDNVFDLVHA  332 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~-g-V~vv~~alD~s~~~l~~a~eR-------Gli~~~~-----~~~e~LPf~d~sFDlV~s  332 (418)
                      .+||+|||+|..+..|+.. + +++  +|+|.|+..+..|.+.       |.+.+.+     ++....|...+.+|+++|
T Consensus       151 ~ildlgtGSGaIslsll~~L~~~~v--~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs  228 (328)
T KOG2904|consen  151 HILDLGTGSGAISLSLLHGLPQCTV--TAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS  228 (328)
T ss_pred             eEEEecCCccHHHHHHHhcCCCceE--EEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence            7999999999999888765 3 443  5789999888776553       3344442     245566677899999999


Q ss_pred             c--CcCcC---------------------CCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          333 S--SGLDV---------------------GGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       333 ~--~~L~~---------------------~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +  ++.+.                     ..-.+.+-.++.-.-|.|+|||.+++.--
T Consensus       229 NPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  229 NPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             CCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence            7  33321                     01112344566778899999999988654

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.68  E-value=0.00015  Score=69.75  Aligned_cols=108  Identities=24%  Similarity=0.248  Sum_probs=74.3

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHH----cCCCc---eee-c-ccCCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAA----RGLFP---LYL-S-LDHRF  320 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~e----RGli~---~~~-~-~~e~L  320 (418)
                      ++..++.+..  .++||+||.+.|..+..|+.. +  -.++  ++|.++++.+.|++    -|+-.   .+. + ..+.+
T Consensus        50 ~L~~L~~~~~--~k~iLEiGT~~GySal~mA~~l~~~g~l~--tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l  125 (219)
T COG4122          50 LLRLLARLSG--PKRILEIGTAIGYSALWMALALPDDGRLT--TIERDEERAEIARENLAEAGVDDRIELLLGGDALDVL  125 (219)
T ss_pred             HHHHHHHhcC--CceEEEeecccCHHHHHHHhhCCCCCeEE--EEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHH
Confidence            4455555553  359999999999999888864 2  2332  47999998887765    35533   334 2 22223


Q ss_pred             C-CCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          321 P-FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       321 P-f~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                      . +..++||+|+...    .  +.....++.+..+.|||||.++++...+.
T Consensus       126 ~~~~~~~fDliFIDa----d--K~~yp~~le~~~~lLr~GGliv~DNvl~~  170 (219)
T COG4122         126 SRLLDGSFDLVFIDA----D--KADYPEYLERALPLLRPGGLIVADNVLFG  170 (219)
T ss_pred             HhccCCCccEEEEeC----C--hhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence            3 5689999999633    2  23345899999999999999988876554

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.67  E-value=0.00012  Score=77.25  Aligned_cols=93  Identities=16%  Similarity=0.189  Sum_probs=58.6

Q ss_pred             CeEEEECCccChHHHHHhhcC------cEEEEeccCCCHHhHH----HHHHcC---CCceeecccCCCCCCCCccceEEe
Q 037675          266 RIGFDIGGGSGTFAARMAERN------VTVITNTLNVDAPYSE----FIAARG---LFPLYLSLDHRFPFYDNVFDLVHA  332 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g------V~vv~~alD~s~~~l~----~a~eRG---li~~~~~~~e~LPf~d~sFDlV~s  332 (418)
                      ..|||||||+|-++...++.+      +.|  .+++.++....    .+.+.|   .+.+++++.+.+..+. .+|+|++
T Consensus       188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~V--yAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVS  264 (448)
T PF05185_consen  188 KVVLDVGAGRGPLSMFALQAGARAGGAVKV--YAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVS  264 (448)
T ss_dssp             -EEEEES-TTSHHHHHHHHTTHHHCCESEE--EEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE
T ss_pred             eEEEEeCCCccHHHHHHHHHHHHhCCCeEE--EEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEE
Confidence            479999999998875444332      444  45677654332    224443   4667778998887644 8999999


Q ss_pred             cCcCcCCCChhHHHHHHHHhhccccCCcEE
Q 037675          333 SSGLDVGGQPEKLEFLMFDFDRILRAGGLF  362 (418)
Q Consensus       333 ~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~  362 (418)
                      -..= .+.+.+.+...|.-.+|.|||||.+
T Consensus       265 ElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~  293 (448)
T PF05185_consen  265 ELLG-SFGDNELSPECLDAADRFLKPDGIM  293 (448)
T ss_dssp             ---B-TTBTTTSHHHHHHHGGGGEEEEEEE
T ss_pred             eccC-CccccccCHHHHHHHHhhcCCCCEE
Confidence            5321 2233345567899999999999976

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.66  E-value=0.00014  Score=69.08  Aligned_cols=98  Identities=21%  Similarity=0.244  Sum_probs=67.8

Q ss_pred             CCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC---CceeecccC-CCC-----CCCCccc
Q 037675          265 IRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDH-RFP-----FYDNVFD  328 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e-~LP-----f~d~sFD  328 (418)
                      .++||+||+++|..+..|++.   +-.++  ++|.++...+.|++    .|+   +.++.+++. -++     ...+.||
T Consensus        46 ~k~vLEIGt~~GySal~la~~l~~~g~i~--tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   46 PKRVLEIGTFTGYSALWLAEALPEDGKIT--TIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             -SEEEEESTTTSHHHHHHHHTSTTTSEEE--EEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             CceEEEeccccccHHHHHHHhhcccceEE--EecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            359999999999999999864   34443  46888888877644    354   344555332 122     1246899


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                      +|+...-      +.....++..+.+.|||||.+++++..+.
T Consensus       124 ~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~  159 (205)
T PF01596_consen  124 FVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWR  159 (205)
T ss_dssp             EEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred             EEEEccc------ccchhhHHHHHhhhccCCeEEEEcccccc
Confidence            9997542      23445788899999999999988886554

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.61  E-value=0.0009  Score=64.51  Aligned_cols=146  Identities=14%  Similarity=0.247  Sum_probs=86.5

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCH----HhHHHHHHc-CCCceeecccCCCCC--CCCccceE
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDA----PYSEFIAAR-GLFPLYLSLDHRFPF--YDNVFDLV  330 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~----~~l~~a~eR-Gli~~~~~~~e~LPf--~d~sFDlV  330 (418)
                      .+++|.  +||-+|+.+|+...++++- +-..+..+++.++    ..++.|.+| +++|.+.+.....-|  --..+|+|
T Consensus        70 ~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI  147 (229)
T PF01269_consen   70 PIKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVI  147 (229)
T ss_dssp             S--TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEE
T ss_pred             CCCCCC--EEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEE
Confidence            355664  8999999999999888875 4222224568886    455678887 456666653322211  23489999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc------CchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccc
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC------ANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSE  404 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~------~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e  404 (418)
                      ++.-.     +++..+.++.....-||+||.++|.--..      ..++.-+.-..-++..||+.+.-...+-  -.+++
T Consensus       148 ~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LeP--y~~dH  220 (229)
T PF01269_consen  148 FQDVA-----QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEP--YERDH  220 (229)
T ss_dssp             EEE-S-----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TT--TSTTE
T ss_pred             EecCC-----ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCC--CCCCc
Confidence            98432     34556788999999999999998764321      1122212223334555888775333222  25788


Q ss_pred             eEEEEEEEc
Q 037675          405 VYLSAVLQK  413 (418)
Q Consensus       405 ~~l~Ai~qK  413 (418)
                      ..+.+.++|
T Consensus       221 ~~vv~~y~~  229 (229)
T PF01269_consen  221 AMVVGRYRK  229 (229)
T ss_dssp             EEEEEEE--
T ss_pred             EEEEEEecC
Confidence            888888876

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.57  E-value=0.00027  Score=75.67  Aligned_cols=100  Identities=12%  Similarity=-0.011  Sum_probs=65.2

Q ss_pred             CCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhH----HHHHHcCCCcee--ecccCCC--CCCCCccceEEec
Q 037675          264 GIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYS----EFIAARGLFPLY--LSLDHRF--PFYDNVFDLVHAS  333 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l----~~a~eRGli~~~--~~~~e~L--Pf~d~sFDlV~s~  333 (418)
                      ....+||||||.|.|...++..+  ...+  ++|+...-+    ..+.++|+..+.  .++++.+  -|+++++|.|+..
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~i--GiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~  424 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFI--GVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL  424 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEE--EEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence            34689999999999999999885  3443  468776533    344556664332  2333211  1678999999985


Q ss_pred             CcCcCCCC-----hhHHHHHHHHhhccccCCcEEEEE
Q 037675          334 SGLDVGGQ-----PEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       334 ~~L~~~~~-----~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      .-=-|...     +---..++.++.++|||||.+.+.
T Consensus       425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~  461 (506)
T PRK01544        425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA  461 (506)
T ss_pred             CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence            43222111     111137899999999999998554

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.57  E-value=0.00081  Score=66.17  Aligned_cols=87  Identities=17%  Similarity=0.222  Sum_probs=61.0

Q ss_pred             CccceEEecCcCcC-CCChhHHHHHHHHhhccccCCcEEEEEec-----ccCch-------hHHHHHHHHHHHcCcEEEE
Q 037675          325 NVFDLVHASSGLDV-GGQPEKLEFLMFDFDRILRAGGLFWLDNF-----YCAND-------EKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       325 ~sFDlV~s~~~L~~-~~~~~~le~~L~Ei~RVLRPGG~~ii~~~-----~~~~e-------e~~~~~~~l~~~~Gfk~l~  391 (418)
                      ..||+|++..|+.. -.+.+....++..+.+.|||||.|++...     +..+.       -.++.+.+.++..||....
T Consensus       157 ~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~  236 (256)
T PF01234_consen  157 PKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIED  236 (256)
T ss_dssp             SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEE
T ss_pred             cchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEe
Confidence            36999999999985 44677788999999999999999988764     22221       1245688889999999888


Q ss_pred             EEEcccCCCCccceEEEEEEEc
Q 037675          392 WVVGEKGETGKSEVYLSAVLQK  413 (418)
Q Consensus       392 W~~~~k~d~~~~e~~l~Ai~qK  413 (418)
                      +..  ......-+.++.++.||
T Consensus       237 ~~~--~~~~~d~~~~~f~~a~K  256 (256)
T PF01234_consen  237 LEK--QSKVSDYEGMFFLVARK  256 (256)
T ss_dssp             EEG---TTTB---EEEEEEEEE
T ss_pred             ccc--ccCcCCCCcEEEEEEeC
Confidence            872  11112235567777777

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.48  E-value=0.0003  Score=64.75  Aligned_cols=99  Identities=21%  Similarity=0.253  Sum_probs=57.4

Q ss_pred             CCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHH----HHHcC-----CCcee-ecccCCC--C-CCCCccce
Q 037675          265 IRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEF----IAARG-----LFPLY-LSLDHRF--P-FYDNVFDL  329 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~----a~eRG-----li~~~-~~~~e~L--P-f~d~sFDl  329 (418)
                      ..+||++|||+|..+..++..  ...++.  .|..+ .++.    +...+     -+.+. .+|.+..  + ...+.||+
T Consensus        46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~--TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   46 GKRVLELGAGTGLPGIAAAKLFGAARVVL--TDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             TSEEEETT-TTSHHHHHHHHT-T-SEEEE--EE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             CceEEEECCccchhHHHHHhccCCceEEE--eccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            359999999999888888887  344442  35544 3332    22222     11121 2454433  1 23568999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC  369 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~  369 (418)
                      |+++.|+...   ...+.++.=+.+.|+|+|.+++.....
T Consensus       123 IlasDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  123 ILASDVLYDE---ELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             EEEES--S-G---GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             EEEecccchH---HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            9999998754   456688999999999999988877654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.45  E-value=0.00074  Score=68.68  Aligned_cols=94  Identities=18%  Similarity=0.248  Sum_probs=69.2

Q ss_pred             CCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc---CCCceee-cccCCCCCCCCccceEEecCcCc
Q 037675          264 GIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR---GLFPLYL-SLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR---Gli~~~~-~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+...+|+|.|.|..+..+..+-  +..    +|.+.+.+-.++..   |+ ..+. +..+..|-.    |+|++-+++|
T Consensus       177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~----infdlp~v~~~a~~~~~gV-~~v~gdmfq~~P~~----daI~mkWiLh  247 (342)
T KOG3178|consen  177 GVNVAVDVGGGIGRVLKNLLSKYPHIKG----INFDLPFVLAAAPYLAPGV-EHVAGDMFQDTPKG----DAIWMKWILH  247 (342)
T ss_pred             cCceEEEcCCcHhHHHHHHHHhCCCCce----eecCHHHHHhhhhhhcCCc-ceecccccccCCCc----CeEEEEeecc
Confidence            35789999999999998888763  444    47776666443332   32 2233 344555543    4999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +|.|. +..++|...+.-|+|||.+++-+.
T Consensus       248 dwtDe-dcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  248 DWTDE-DCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             cCChH-HHHHHHHHHHHhCCCCCEEEEEec
Confidence            99875 578999999999999999988765

>PLN02823 spermine synthase

Probab=97.44  E-value=0.00057  Score=69.70  Aligned_cols=100  Identities=18%  Similarity=0.212  Sum_probs=64.8

Q ss_pred             CCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCC----------CceeecccCC-CCCCCCccceEE
Q 037675          264 GIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGL----------FPLYLSLDHR-FPFYDNVFDLVH  331 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGl----------i~~~~~~~e~-LPf~d~sFDlV~  331 (418)
                      ..++||.+|+|.|..+..+.+. ++.-+ ..+|+++.+++.+++.-.          +.++.+++.. +...++.||+|+
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v-~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKV-VMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeE-EEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            3579999999999999988875 44322 347999999998876421          1233333222 233467899999


Q ss_pred             ecCcCcCCC--Chh--HHHHHHH-HhhccccCCcEEEEE
Q 037675          332 ASSGLDVGG--QPE--KLEFLMF-DFDRILRAGGLFWLD  365 (418)
Q Consensus       332 s~~~L~~~~--~~~--~le~~L~-Ei~RVLRPGG~~ii~  365 (418)
                      ... ...+.  ...  --..++. .+.+.|+|||.+++-
T Consensus       182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            863 22221  000  0125666 799999999988664

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.39  E-value=0.00036  Score=69.86  Aligned_cols=68  Identities=18%  Similarity=0.286  Sum_probs=50.7

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----C---CCceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----G---LFPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----G---li~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||||||+|.++..|++++..++  ++|+++.+++.++++    +   -+.++.+++...++  ..||.|+++--.+
T Consensus        38 ~~VLEIG~G~G~LT~~Ll~~~~~V~--avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaNlPY~  112 (294)
T PTZ00338         38 DTVLEIGPGTGNLTEKLLQLAKKVI--AIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVANVPYQ  112 (294)
T ss_pred             CEEEEecCchHHHHHHHHHhCCcEE--EEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEecCCcc
Confidence            4899999999999999999876554  579999999877653    2   23456677766654  3689999865444

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.31  E-value=0.0016  Score=64.59  Aligned_cols=113  Identities=21%  Similarity=0.245  Sum_probs=73.2

Q ss_pred             HHHHHHccCCCCCCeEEEECCccC----hHHHHHhhcCc-----EEEEeccCCCHHhHHHHHH---------cCCCce--
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSG----TFAARMAERNV-----TVITNTLNVDAPYSEFIAA---------RGLFPL--  312 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG----~faa~La~~gV-----~vv~~alD~s~~~l~~a~e---------RGli~~--  312 (418)
                      .+++++....+..=+|.-+||+||    +.|..|.+...     .+--.|.|++...++.|+.         +++.+.  
T Consensus        85 v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~  164 (268)
T COG1352          85 VLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELL  164 (268)
T ss_pred             HHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHH
Confidence            344444333333348999999999    56666666531     1222468999888876543         232100  


Q ss_pred             ---e----------------------ecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          313 ---Y----------------------LSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       313 ---~----------------------~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                         +                      ++.... ++..+.||+|+|-++|...+.+. -+.++..++..|+|||++++.+.
T Consensus       165 ~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~-~~~~~~fD~IfCRNVLIYFd~~~-q~~il~~f~~~L~~gG~LflG~s  242 (268)
T COG1352         165 RRYFERGGDGSYRVKEELRKMVRFRRHNLLDD-SPFLGKFDLIFCRNVLIYFDEET-QERILRRFADSLKPGGLLFLGHS  242 (268)
T ss_pred             hhhEeecCCCcEEEChHHhcccEEeecCCCCC-ccccCCCCEEEEcceEEeeCHHH-HHHHHHHHHHHhCCCCEEEEccC
Confidence               0                      001111 22667799999999999886544 46899999999999999988653

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.27  E-value=0.0077  Score=56.63  Aligned_cols=141  Identities=16%  Similarity=0.209  Sum_probs=80.4

Q ss_pred             ccccccCCcHHHHHHHH----ccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHH----HHHHcCC-
Q 037675          242 RYIKARGKNDFLIDDVL----ALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSE----FIAARGL-  309 (418)
Q Consensus       242 ~W~~~~~~y~~~I~~lL----~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~----~a~eRGl-  309 (418)
                      .|..|...+-.++|.+-    .++.-....+||||||+|-.+..|++. +  +..+  +.|+++...+    -|+..+. 
T Consensus        17 dVYEPaEDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~l--atDiNp~A~~~Tl~TA~~n~~~   94 (209)
T KOG3191|consen   17 DVYEPAEDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYL--ATDINPEALEATLETARCNRVH   94 (209)
T ss_pred             hccCccchhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEE--EecCCHHHHHHHHHHHHhcCCc
Confidence            55566554333444331    133323558999999999999999886 3  4444  4687765554    3444433 


Q ss_pred             Cceeecc-cCCCCCCCCccceEEecC--cCcC------------CC----ChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          310 FPLYLSL-DHRFPFYDNVFDLVHASS--GLDV------------GG----QPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       310 i~~~~~~-~e~LPf~d~sFDlV~s~~--~L~~------------~~----~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                      +..+..+ ...+  ..++.|+++-+-  +...            |.    -..-+.+++..+..+|.|.|.|++.....+
T Consensus        95 ~~~V~tdl~~~l--~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N  172 (209)
T KOG3191|consen   95 IDVVRTDLLSGL--RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN  172 (209)
T ss_pred             cceeehhHHhhh--ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence            2333321 1111  226677666542  1110            11    112245778888899999999988765444


Q ss_pred             chhHHHHHHHHHHHcCcEE
Q 037675          371 NDEKKSALTRLIERFGYKK  389 (418)
Q Consensus       371 ~ee~~~~~~~l~~~~Gfk~  389 (418)
                      ..+   ++..+++..||..
T Consensus       173 ~p~---ei~k~l~~~g~~~  188 (209)
T KOG3191|consen  173 KPK---EILKILEKKGYGV  188 (209)
T ss_pred             CHH---HHHHHHhhcccce
Confidence            332   3555788888864

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.21  E-value=0.0013  Score=62.04  Aligned_cols=64  Identities=20%  Similarity=0.249  Sum_probs=45.5

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc---C--CCceeecccCCCCCCCCccceEEec
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR---G--LFPLYLSLDHRFPFYDNVFDLVHAS  333 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR---G--li~~~~~~~e~LPf~d~sFDlV~s~  333 (418)
                      ++|+|+|||||.++...+-.|..-| .++|+++..++.+++.   +  -+.++.++..++   +..||.|+.+
T Consensus        47 ~~V~DlG~GTG~La~ga~~lGa~~V-~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimN  115 (198)
T COG2263          47 KTVLDLGAGTGILAIGAALLGASRV-LAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMN  115 (198)
T ss_pred             CEEEEcCCCcCHHHHHHHhcCCcEE-EEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEEC
Confidence            4799999999999988887874433 3578888888776543   2  234555555544   5678888886

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=97.19  E-value=0.0012  Score=64.59  Aligned_cols=98  Identities=13%  Similarity=0.194  Sum_probs=65.7

Q ss_pred             CCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC---Cceeeccc-CCCCC------CCCcc
Q 037675          265 IRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLD-HRFPF------YDNVF  327 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~-e~LPf------~d~sF  327 (418)
                      .++||+||+++|..+..|+..   +-.++  ++|.++...+.|++    .|+   +.+..+++ +-||-      ..++|
T Consensus        80 ak~iLEiGT~~GySal~la~al~~~g~v~--tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f  157 (247)
T PLN02589         80 AKNTMEIGVYTGYSLLATALALPEDGKIL--AMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF  157 (247)
T ss_pred             CCEEEEEeChhhHHHHHHHhhCCCCCEEE--EEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence            458999999999988888753   22333  46888877766543    454   33444532 22221      24689


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                      |+|+...-      +.....++..+.+.|||||.+++++..+.
T Consensus       158 D~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~~  194 (247)
T PLN02589        158 DFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLWN  194 (247)
T ss_pred             cEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCCC
Confidence            99996432      33344778888899999999988876554

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.18  E-value=0.0015  Score=62.88  Aligned_cols=109  Identities=16%  Similarity=0.190  Sum_probs=75.2

Q ss_pred             ccccccCCcHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCc--EEEEeccCCCHHhHHHHHHcCC------Ccee
Q 037675          242 RYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNV--TVITNTLNVDAPYSEFIAARGL------FPLY  313 (418)
Q Consensus       242 ~W~~~~~~y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV--~vv~~alD~s~~~l~~a~eRGl------i~~~  313 (418)
                      +|..+   ++....+.+..+.   ++||.||-|.|.....+.+++.  ..+   ++.++..++..++-|-      +++.
T Consensus        85 ~WEtp---iMha~A~ai~tkg---grvLnVGFGMgIidT~iQe~~p~~H~I---iE~hp~V~krmr~~gw~ek~nViil~  155 (271)
T KOG1709|consen   85 RWETP---IMHALAEAISTKG---GRVLNVGFGMGIIDTFIQEAPPDEHWI---IEAHPDVLKRMRDWGWREKENVIILE  155 (271)
T ss_pred             hhhhH---HHHHHHHHHhhCC---ceEEEeccchHHHHHHHhhcCCcceEE---EecCHHHHHHHHhcccccccceEEEe
Confidence            56554   5666666555443   4899999999999988888752  222   4889988888777553      2222


Q ss_pred             ecccCCCC-CCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEE
Q 037675          314 LSLDHRFP-FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLF  362 (418)
Q Consensus       314 ~~~~e~LP-f~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~  362 (418)
                      --|...+| .+|+.||.|+-..--.+   .+++..+.+-+.|.|||||.|
T Consensus       156 g~WeDvl~~L~d~~FDGI~yDTy~e~---yEdl~~~hqh~~rLLkP~gv~  202 (271)
T KOG1709|consen  156 GRWEDVLNTLPDKHFDGIYYDTYSEL---YEDLRHFHQHVVRLLKPEGVF  202 (271)
T ss_pred             cchHhhhccccccCcceeEeechhhH---HHHHHHHHHHHhhhcCCCceE
Confidence            22444444 46899999986432222   366778889999999999987

>PRK00536 speE spermidine synthase; Provisional

Probab=97.18  E-value=0.0049  Score=60.91  Aligned_cols=91  Identities=13%  Similarity=0.060  Sum_probs=63.4

Q ss_pred             CCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC------C----CceeecccCCCCCCCCccceEE
Q 037675          262 SGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG------L----FPLYLSLDHRFPFYDNVFDLVH  331 (418)
Q Consensus       262 ~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG------l----i~~~~~~~e~LPf~d~sFDlV~  331 (418)
                      .+..++||=+|.|-|+.+..+.+..-.++  -+|+++.+++.+++--      +    +.++. ...  .-..++||+|+
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~--mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVII  144 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKYDTHVD--FVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLII  144 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCcCCeeE--EEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEE
Confidence            45568999999999999999998853332  2699999998877721      1    11111 111  11247899999


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      ....+.        +.+...+.|+|+|||.++.-
T Consensus       145 vDs~~~--------~~fy~~~~~~L~~~Gi~v~Q  170 (262)
T PRK00536        145 CLQEPD--------IHKIDGLKRMLKEDGVFISV  170 (262)
T ss_pred             EcCCCC--------hHHHHHHHHhcCCCcEEEEC
Confidence            875421        26678999999999998773

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.17  E-value=0.008  Score=57.35  Aligned_cols=138  Identities=18%  Similarity=0.193  Sum_probs=72.3

Q ss_pred             CeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHcCCCceeecccCCC--------CCCCCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF--------PFYDNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L--------Pf~d~sFDlV~s~~  334 (418)
                      ..|+|+|+-.|+|+..++++ +  ..++++.++...+.-      | +.++.++...-        -+....+|+|.+..
T Consensus        47 ~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~------~-V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~  119 (205)
T COG0293          47 MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP------G-VIFLQGDITDEDTLEKLLEALGGAPVDVVLSDM  119 (205)
T ss_pred             CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC------C-ceEEeeeccCccHHHHHHHHcCCCCcceEEecC
Confidence            48999999999999999887 3  334433322221111      1 12222222111        12234479999743


Q ss_pred             cC--------cCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceE
Q 037675          335 GL--------DVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVY  406 (418)
Q Consensus       335 ~L--------~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~  406 (418)
                      .=        +|...-.--+.++.=..++|+|||.|++-.|.....+  + +...++++ |+.++-....-..+...|.|
T Consensus       120 ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~--~-~l~~~~~~-F~~v~~~KP~aSR~~S~E~y  195 (205)
T COG0293         120 APNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFE--D-LLKALRRL-FRKVKIFKPKASRKRSREIY  195 (205)
T ss_pred             CCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHH--H-HHHHHHHh-hceeEEecCccccCCCceEE
Confidence            22        1211111122333444569999999988888655433  2 23333332 66665433222222344888


Q ss_pred             EEEEEEcC
Q 037675          407 LSAVLQKP  414 (418)
Q Consensus       407 l~Ai~qKP  414 (418)
                      +.+..-|+
T Consensus       196 ~v~~~~~~  203 (205)
T COG0293         196 LVAKGFKG  203 (205)
T ss_pred             EEEecccc
Confidence            88776554

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.14  E-value=0.00089  Score=62.10  Aligned_cols=121  Identities=18%  Similarity=0.242  Sum_probs=71.4

Q ss_pred             cCCCCCCeEEEECCccChHHHHHh--hcCcE---------EEEeccCCCHHhHHHHHH----cCC---CceeecccCCCC
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMA--ERNVT---------VITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFP  321 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La--~~gV~---------vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LP  321 (418)
                      +.+|  ..|||-=||+|++....+  ..++.         +  .+.|+++.+++.+++    .|+   +.+...++.++|
T Consensus        26 ~~~~--~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~--~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~  101 (179)
T PF01170_consen   26 WRPG--DVVLDPFCGSGTILIEAALMGANIPPLNDINELKI--IGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP  101 (179)
T ss_dssp             --TT--S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--E--EEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG
T ss_pred             CCCC--CEEeecCCCCCHHHHHHHHHhhCcccccccccccE--EecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc
Confidence            4444  489999999999884443  33444         3  357999998876654    244   233446888999


Q ss_pred             CCCCccceEEecCcCcC-CCC----hhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEE
Q 037675          322 FYDNVFDLVHASSGLDV-GGQ----PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       322 f~d~sFDlV~s~~~L~~-~~~----~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W  392 (418)
                      +.++++|.|++.-=+-. ...    ..-...++.++.|+|+|...+++...    .+    +...++..++++.+-
T Consensus       102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~----~~----~~~~~~~~~~~~~~~  169 (179)
T PF01170_consen  102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN----RE----LEKALGLKGWRKRKL  169 (179)
T ss_dssp             GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC----CC----HHHHHTSTTSEEEEE
T ss_pred             cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC----HH----HHHHhcchhhceEEE
Confidence            88999999999621111 011    12234678999999999444444322    12    444555657776653

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.13  E-value=0.002  Score=60.36  Aligned_cols=98  Identities=14%  Similarity=0.051  Sum_probs=58.3

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCC---ceeecccCC-CC-C-CC-CccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLF---PLYLSLDHR-FP-F-YD-NVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli---~~~~~~~e~-LP-f-~d-~sFDlV~s~~  334 (418)
                      .+|||++||+|.++..++.+|...+ +.+|.++..++.+++    .++.   .++.+++.+ +. + .. ..||+|+..=
T Consensus        51 ~~vLDLfaGsG~lglea~srga~~v-~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP  129 (189)
T TIGR00095        51 AHLLDVFAGSGLLGEEALSRGAKVA-FLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP  129 (189)
T ss_pred             CEEEEecCCCcHHHHHHHhCCCCEE-EEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence            4899999999999999999986322 357888877765543    2331   234444422 22 1 12 2478888642


Q ss_pred             cCcCCCChhHHHHHHHHh--hccccCCcEEEEEecc
Q 037675          335 GLDVGGQPEKLEFLMFDF--DRILRAGGLFWLDNFY  368 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei--~RVLRPGG~~ii~~~~  368 (418)
                      =+.. .   ..+.++..+  ..+|+++|.+++.+..
T Consensus       130 Py~~-~---~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       130 PFFN-G---ALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             CCCC-C---cHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            2211 1   112333322  4589999988887653

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.05  E-value=0.0063  Score=60.21  Aligned_cols=119  Identities=17%  Similarity=0.020  Sum_probs=70.5

Q ss_pred             CCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH--cCCCceee----c--ccCCCCCCCCccceEEec
Q 037675          264 GIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA--RGLFPLYL----S--LDHRFPFYDNVFDLVHAS  333 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e--RGli~~~~----~--~~e~LPf~d~sFDlV~s~  333 (418)
                      ..++|||+|+|.|+-.-+..+.  .+.-+ +.+|.|+.|+++++.  +.......    .  ..+..++..  .|+|+++
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~-~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~DLvi~s  109 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEY-TCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPP--DDLVIAS  109 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceee-eeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCC--CcEEEEe
Confidence            3468999999999765554443  22222 347999999986543  22211111    0  112233333  3999999


Q ss_pred             CcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC-chhHHHHHHHHHHHcCcE
Q 037675          334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA-NDEKKSALTRLIERFGYK  388 (418)
Q Consensus       334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-~ee~~~~~~~l~~~~Gfk  388 (418)
                      ++|....+ .....++..+.+.+.+  +++|.++... +-+.-....+.+...|+.
T Consensus       110 ~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~  162 (274)
T PF09243_consen  110 YVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAH  162 (274)
T ss_pred             hhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCc
Confidence            99998877 6667788888777766  7877777433 222222234444444444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.0022  Score=61.41  Aligned_cols=93  Identities=20%  Similarity=0.265  Sum_probs=62.9

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhc----CcEEEEeccCCCHHhHHHHH----------------HcCCCceeecccCC
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAER----NVTVITNTLNVDAPYSEFIA----------------ARGLFPLYLSLDHR  319 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~----gV~vv~~alD~s~~~l~~a~----------------eRGli~~~~~~~e~  319 (418)
                      +.+|-  ..||+|.|+|.+++.++..    |..++  ++|..++.++.+.                ++|-..++.+++..
T Consensus        80 L~pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~--GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~  155 (237)
T KOG1661|consen   80 LQPGA--SFLDVGSGSGYLTACFARMVGATGGNVH--GIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRK  155 (237)
T ss_pred             hccCc--ceeecCCCccHHHHHHHHHhcCCCcccc--chhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccc
Confidence            66674  8999999999988666632    33333  3676666665332                34444556677766


Q ss_pred             CCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          320 FPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       320 LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      .--....||.||+...-.         ...+++-..|+|||.++|-
T Consensus       156 g~~e~a~YDaIhvGAaa~---------~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  156 GYAEQAPYDAIHVGAAAS---------ELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             cCCccCCcceEEEccCcc---------ccHHHHHHhhccCCeEEEe
Confidence            655677899999975433         3445777889999998764

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=96.97  E-value=0.0017  Score=67.38  Aligned_cols=92  Identities=22%  Similarity=0.255  Sum_probs=62.0

Q ss_pred             CeEEEECCccChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHH----cCCC--ceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAER-NV-TVITNTLNVDAPYSEFIAA----RGLF--PLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-gV-~vv~~alD~s~~~l~~a~e----RGli--~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||++||+|.++..++.. ++ .|  +++|.++..++.+++    .++.  .++.+++..+-...+.||+|+..    
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V--~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD----  132 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKV--TLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID----  132 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEE--EEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC----
Confidence            37999999999999999764 53 33  347999888876654    3442  23445554432114579999973    


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +...+   ..++....+.++|||+++++.
T Consensus       133 P~Gs~---~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        133 PFGSP---APFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             CCCCc---HHHHHHHHHHhcCCCEEEEEe
Confidence            22222   256677678899999999984

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=96.94  E-value=0.0032  Score=63.90  Aligned_cols=86  Identities=19%  Similarity=0.181  Sum_probs=52.3

Q ss_pred             cHHHHHHHHc------cCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH----c-CCC---cee
Q 037675          250 NDFLIDDVLA------LGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA----R-GLF---PLY  313 (418)
Q Consensus       250 y~~~I~~lL~------l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e----R-Gli---~~~  313 (418)
                      |-..+.++|.      +..|...+|||||||+|..+..|+.+  +..++  ++|+++..++.|++    . ++.   .+.
T Consensus        94 Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~--atDId~~Al~~A~~Nv~~Np~l~~~I~~~  171 (321)
T PRK11727         94 YIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFV--GSDIDPQALASAQAIISANPGLNGAIRLR  171 (321)
T ss_pred             HHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEE--EEeCCHHHHHHHHHHHHhccCCcCcEEEE
Confidence            4445666653      22345568999999999888777765  44543  57998888876654    2 331   222


Q ss_pred             e-cccCC----CCCCCCccceEEecCcCc
Q 037675          314 L-SLDHR----FPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       314 ~-~~~e~----LPf~d~sFDlV~s~~~L~  337 (418)
                      . .+...    +..+++.||+|+|+==++
T Consensus       172 ~~~~~~~i~~~i~~~~~~fDlivcNPPf~  200 (321)
T PRK11727        172 LQKDSKAIFKGIIHKNERFDATLCNPPFH  200 (321)
T ss_pred             EccchhhhhhcccccCCceEEEEeCCCCc
Confidence            2 11111    113467899999974333

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=96.89  E-value=0.0034  Score=64.49  Aligned_cols=114  Identities=11%  Similarity=0.097  Sum_probs=67.0

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCC-C-CC--------------
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRF-P-FY--------------  323 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~L-P-f~--------------  323 (418)
                      .+|||++||+|.++..|++..-.++  ++|.++.+++.+++    .|+  +.++.++++++ + +.              
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~~v~--~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~  285 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFRRVL--ATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK  285 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCCEEE--EEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence            3699999999999998887644443  57999999987665    344  23444443331 1 10              


Q ss_pred             CCccceEEecCcCcCCCChhH-HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEc
Q 037675          324 DNVFDLVHASSGLDVGGQPEK-LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVG  395 (418)
Q Consensus       324 d~sFDlV~s~~~L~~~~~~~~-le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~  395 (418)
                      ...||+|+..    +-  +.+ .+.++..+.   +|++.++++.-   ...+...+..+.+  ||+..+....
T Consensus       286 ~~~~D~v~lD----PP--R~G~~~~~l~~l~---~~~~ivyvSC~---p~tlarDl~~L~~--gY~l~~v~~~  344 (362)
T PRK05031        286 SYNFSTIFVD----PP--RAGLDDETLKLVQ---AYERILYISCN---PETLCENLETLSQ--THKVERFALF  344 (362)
T ss_pred             CCCCCEEEEC----CC--CCCCcHHHHHHHH---ccCCEEEEEeC---HHHHHHHHHHHcC--CcEEEEEEEc
Confidence            2258999863    11  111 124444443   47888888743   2333334555443  8876654443

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.86  E-value=0.016  Score=56.51  Aligned_cols=144  Identities=15%  Similarity=0.132  Sum_probs=81.1

Q ss_pred             CCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHc------C----CCceeecccCC-CCCCCC-ccceE
Q 037675          264 GIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAAR------G----LFPLYLSLDHR-FPFYDN-VFDLV  330 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eR------G----li~~~~~~~e~-LPf~d~-sFDlV  330 (418)
                      ..++||=||-|.|+.+..+.+.. +.-+ ..+|+++..++.+++-      +    .+.++++++.. +--..+ .||+|
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i-~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESI-TVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEE-EEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceE-EEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            45799999999999999999875 3322 2469999999887652      1    12344443221 112233 89999


Q ss_pred             EecCcCcCCCChhH--HHHHHHHhhccccCCcEEEEEec--ccCchhHHHHHHHHHHHcCcEEEEE--EEcccCCCCccc
Q 037675          331 HASSGLDVGGQPEK--LEFLMFDFDRILRAGGLFWLDNF--YCANDEKKSALTRLIERFGYKKLKW--VVGEKGETGKSE  404 (418)
Q Consensus       331 ~s~~~L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~~~--~~~~ee~~~~~~~l~~~~Gfk~l~W--~~~~k~d~~~~e  404 (418)
                      +....- .......  -..++..+.+.|+|||.+++-..  ... ++.-..+...++.... .+..  ...+.-   .+.
T Consensus       155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~-~~~~~~i~~tl~~~F~-~v~~~~~~vP~~---~~~  228 (246)
T PF01564_consen  155 IVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLH-PELFKSILKTLRSVFP-QVKPYTAYVPSY---GSG  228 (246)
T ss_dssp             EEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTT-HHHHHHHHHHHHTTSS-EEEEEEEECTTS---CSS
T ss_pred             EEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccc-hHHHHHHHHHHHHhCC-ceEEEEEEcCee---ccc
Confidence            985432 2211111  23788999999999999876542  222 2322334455555544 3332  222211   234


Q ss_pred             eEEEEEEEcC
Q 037675          405 VYLSAVLQKP  414 (418)
Q Consensus       405 ~~l~Ai~qKP  414 (418)
                      +|..+++.|-
T Consensus       229 ~~~~~~~s~~  238 (246)
T PF01564_consen  229 WWSFASASKD  238 (246)
T ss_dssp             EEEEEEEESS
T ss_pred             ceeEEEEeCC
Confidence            4666677663

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=96.85  E-value=0.0068  Score=61.73  Aligned_cols=95  Identities=14%  Similarity=0.201  Sum_probs=59.2

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCccceEEecCcCc
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+.|||+|||.|.++...+..|..-| .+++.| +|.+.|+.    ..+   +.++.|-.|++.+ ++..|++++.-.=.
T Consensus       178 ~kiVlDVGaGSGILS~FAaqAGA~~v-YAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-PEk~DviISEPMG~  254 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQAGAKKV-YAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL-PEKVDVIISEPMGY  254 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHhCcceE-EEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC-chhccEEEeccchh
Confidence            46899999999998887777774433 344544 45554433    222   2344467777766 45699999842211


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEE
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFW  363 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~i  363 (418)
                      ..-+...+|.++ -..|.|||.|..+
T Consensus       255 mL~NERMLEsYl-~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  255 MLVNERMLESYL-HARKWLKPNGKMF  279 (517)
T ss_pred             hhhhHHHHHHHH-HHHhhcCCCCccc
Confidence            122234455554 4459999999773

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=96.79  E-value=0.0063  Score=56.52  Aligned_cols=112  Identities=14%  Similarity=0.115  Sum_probs=76.4

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEE-eccCCCHHhHHHHHHcCC-CceeecccCCCC-----CCCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVIT-NTLNVDAPYSEFIAARGL-FPLYLSLDHRFP-----FYDN  325 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~-~alD~s~~~l~~a~eRGl-i~~~~~~~e~LP-----f~d~  325 (418)
                      .|..++....|  -.||++|.|||-++.++.++|+.--+ .+++.+..+.....++-- +.++.+++..+.     +.+.
T Consensus        39 ~M~s~I~pesg--lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq  116 (194)
T COG3963          39 KMASVIDPESG--LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQ  116 (194)
T ss_pred             HHHhccCcccC--CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCC
Confidence            34444455555  47999999999999999999753111 347888888877666522 234556665554     6678


Q ss_pred             ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .||.|+|.-=+-....... -.+|.++..-|++||-++--..
T Consensus       117 ~~D~viS~lPll~~P~~~~-iaile~~~~rl~~gg~lvqftY  157 (194)
T COG3963         117 FFDSVISGLPLLNFPMHRR-IAILESLLYRLPAGGPLVQFTY  157 (194)
T ss_pred             eeeeEEeccccccCcHHHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence            8999999754444333222 3688999999999998855433

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=96.74  E-value=0.0024  Score=60.60  Aligned_cols=91  Identities=18%  Similarity=0.237  Sum_probs=54.9

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhh--cCcEEEEeccCCCHHhHH----HHHHcCC---CceeecccCCCCCCCCccceE
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAE--RNVTVITNTLNVDAPYSE----FIAARGL---FPLYLSLDHRFPFYDNVFDLV  330 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~--~gV~vv~~alD~s~~~l~----~a~eRGl---i~~~~~~~e~LPf~d~sFDlV  330 (418)
                      +.+|  .+|+|+-||.|.|+..+++  ++..++  ++|.++...+    .++..++   +..+.+++..++- .+.||-|
T Consensus        99 v~~~--e~VlD~faGIG~f~l~~ak~~~~~~V~--A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drv  173 (200)
T PF02475_consen   99 VKPG--EVVLDMFAGIGPFSLPIAKHGKAKRVY--AVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRV  173 (200)
T ss_dssp             --TT---EEEETT-TTTTTHHHHHHHT-SSEEE--EEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEE
T ss_pred             CCcc--eEEEEccCCccHHHHHHhhhcCccEEE--EecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEE
Confidence            3555  4899999999999999998  455564  4677765444    3444444   2344567777654 8899988


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEE
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLF  362 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~  362 (418)
                      ++..--     ..  ..+|.+..+++|+||.+
T Consensus       174 im~lp~-----~~--~~fl~~~~~~~~~~g~i  198 (200)
T PF02475_consen  174 IMNLPE-----SS--LEFLDAALSLLKEGGII  198 (200)
T ss_dssp             EE--TS-----SG--GGGHHHHHHHEEEEEEE
T ss_pred             EECChH-----HH--HHHHHHHHHHhcCCcEE
Confidence            875311     11  16778899999999976

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.67  E-value=0.0088  Score=57.92  Aligned_cols=108  Identities=19%  Similarity=0.257  Sum_probs=67.0

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhH----HHHHHcCC---Cceeec-ccCCCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYS----EFIAARGL---FPLYLS-LDHRFP  321 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l----~~a~eRGl---i~~~~~-~~e~LP  321 (418)
                      ++..++.+-..  +++||+|.=||..+..++..   +-.++  ++|+++...    ++.+..|+   +.++++ .++.|+
T Consensus        64 fl~~li~~~~a--k~~lelGvfTGySaL~~Alalp~dGrv~--a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd  139 (237)
T KOG1663|consen   64 FLQMLIRLLNA--KRTLELGVFTGYSALAVALALPEDGRVV--AIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLD  139 (237)
T ss_pred             HHHHHHHHhCC--ceEEEEecccCHHHHHHHHhcCCCceEE--EEecChHHHHHhHHHHHhccccceeeeeecchhhhHH
Confidence            34555555443  48999999888766555533   33333  245554433    33334443   455554 222221


Q ss_pred             -----CCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          322 -----FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       322 -----f~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                           ...++||+|+    +.+|.+.-  -.++.+.-+.||+||.++++..-|.
T Consensus       140 ~l~~~~~~~tfDfaF----vDadK~nY--~~y~e~~l~Llr~GGvi~~DNvl~~  187 (237)
T KOG1663|consen  140 ELLADGESGTFDFAF----VDADKDNY--SNYYERLLRLLRVGGVIVVDNVLWP  187 (237)
T ss_pred             HHHhcCCCCceeEEE----EccchHHH--HHHHHHHHhhcccccEEEEeccccC
Confidence                 3679999999    45565443  3888999999999999988875443

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.60  E-value=0.008  Score=63.65  Aligned_cols=100  Identities=16%  Similarity=0.249  Sum_probs=74.8

Q ss_pred             eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-----CceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675          267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-----FPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ  341 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-----i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~  341 (418)
                      ++|-+|||.-.+...+.+-|..-+ +.+|.|+..++....++.     ......+...+.|++++||+|+.-+.++..-.
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~dI-~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~  129 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFEDI-TNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE  129 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCCCc-eeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence            899999999999999988875543 346999877776666552     22334688899999999999999888774321


Q ss_pred             hh-------HHHHHHHHhhccccCCcEEEEEec
Q 037675          342 PE-------KLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       342 ~~-------~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ..       -....+.|+.|+|+|||+++....
T Consensus       130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            11       223568899999999999855443

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=96.60  E-value=0.0076  Score=56.52  Aligned_cols=114  Identities=22%  Similarity=0.257  Sum_probs=67.6

Q ss_pred             eEEEECCccChHHHHHhh--cCcEEEEeccCCCHH---hHHH-HHHcCCC--ceeecccCCCCCCCCccceEEecCcCcC
Q 037675          267 IGFDIGGGSGTFAARMAE--RNVTVITNTLNVDAP---YSEF-IAARGLF--PLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~--~gV~vv~~alD~s~~---~l~~-a~eRGli--~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      +++|||.|.|--|.-|+=  -...+.  -+|....   +++. +.+-|+.  .++++.+|. +.....||+|.+-.+-. 
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~--LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~~-  126 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVT--LVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVAP-  126 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEE--EEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSSS-
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEE--EEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhcC-
Confidence            799999999987755552  233322  2588764   4433 4445663  344566666 66789999999865432 


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                            +..++.-+.+.|||||.+++---....+|.. .....++..+.+...
T Consensus       127 ------l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~-~~~~~~~~~~~~~~~  172 (184)
T PF02527_consen  127 ------LDKLLELARPLLKPGGRLLAYKGPDAEEELE-EAKKAWKKLGLKVLS  172 (184)
T ss_dssp             ------HHHHHHHHGGGEEEEEEEEEEESS--HHHHH-THHHHHHCCCEEEEE
T ss_pred             ------HHHHHHHHHHhcCCCCEEEEEcCCChHHHHH-HHHhHHHHhCCEEee
Confidence                  2377888899999999886542222222322 244455565555543

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.55  E-value=0.12  Score=53.13  Aligned_cols=128  Identities=17%  Similarity=0.218  Sum_probs=80.7

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhhc----CcEEEEeccCCCHHhHHH----HHHcCCCc--eeecccCCCC-C
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAER----NVTVITNTLNVDAPYSEF----IAARGLFP--LYLSLDHRFP-F  322 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~----gV~vv~~alD~s~~~l~~----a~eRGli~--~~~~~~e~LP-f  322 (418)
                      ...+|...+|  .+|||+-++.|+=+.+|++.    +..|  +++|.++.-++.    +..-|+..  ....+...++ .
T Consensus       148 ~a~~L~p~pg--e~VlD~cAAPGGKTthla~~~~~~~~iV--~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~  223 (355)
T COG0144         148 PALVLDPKPG--ERVLDLCAAPGGKTTHLAELMENEGAIV--VAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL  223 (355)
T ss_pred             HHHHcCCCCc--CEEEEECCCCCCHHHHHHHhcCCCCceE--EEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc
Confidence            3445556666  59999999999877777765    3443  357888765543    34446643  3333444443 1


Q ss_pred             -CC-CccceEEec------CcCc-----CCC-ChhH-------HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHH
Q 037675          323 -YD-NVFDLVHAS------SGLD-----VGG-QPEK-------LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRL  381 (418)
Q Consensus       323 -~d-~sFDlV~s~------~~L~-----~~~-~~~~-------le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l  381 (418)
                       +. ..||.|...      +++.     .|. .+.+       -..+|....++|||||.++.+.-....+|.++....+
T Consensus       224 ~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~  303 (355)
T COG0144         224 LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERF  303 (355)
T ss_pred             ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHH
Confidence             22 259999872      4442     111 1111       2367888999999999998887666666766777777


Q ss_pred             HHHc
Q 037675          382 IERF  385 (418)
Q Consensus       382 ~~~~  385 (418)
                      +++.
T Consensus       304 L~~~  307 (355)
T COG0144         304 LERH  307 (355)
T ss_pred             HHhC
Confidence            7664

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=96.53  E-value=0.01  Score=58.93  Aligned_cols=75  Identities=16%  Similarity=0.300  Sum_probs=54.0

Q ss_pred             HHHHHHc---cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC--C-----CceeecccCCCCC
Q 037675          253 LIDDVLA---LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG--L-----FPLYLSLDHRFPF  322 (418)
Q Consensus       253 ~I~~lL~---l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG--l-----i~~~~~~~e~LPf  322 (418)
                      ++++++.   ++++  ..||++|-|||.++..|.+.+-+|+  +++.++.|+....+|+  .     ..+++++....++
T Consensus        46 v~~~I~~ka~~k~t--D~VLEvGPGTGnLT~~lLe~~kkVv--A~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~  121 (315)
T KOG0820|consen   46 VIDQIVEKADLKPT--DVVLEVGPGTGNLTVKLLEAGKKVV--AVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL  121 (315)
T ss_pred             HHHHHHhccCCCCC--CEEEEeCCCCCHHHHHHHHhcCeEE--EEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence            4555442   4554  4899999999999999999998886  5788889998887763  2     2345565544433


Q ss_pred             CCCccceEEec
Q 037675          323 YDNVFDLVHAS  333 (418)
Q Consensus       323 ~d~sFDlV~s~  333 (418)
                        -.||.++++
T Consensus       122 --P~fd~cVsN  130 (315)
T KOG0820|consen  122 --PRFDGCVSN  130 (315)
T ss_pred             --cccceeecc
Confidence              348999884

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.47  E-value=0.011  Score=59.11  Aligned_cols=103  Identities=18%  Similarity=0.163  Sum_probs=67.3

Q ss_pred             CCCCCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHcCC------C----ceeecccC-CCCCCCCccc
Q 037675          261 GSGGIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAARGL------F----PLYLSLDH-RFPFYDNVFD  328 (418)
Q Consensus       261 ~~g~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eRGl------i----~~~~~~~e-~LPf~d~sFD  328 (418)
                      ..+..++||=||-|.|+.+..+.+.+ +.-+ +.+|+++..++.+++.-.      .    .+.+++.. =+.-..++||
T Consensus        73 ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i-~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD  151 (282)
T COG0421          73 AHPNPKRVLIIGGGDGGTLREVLKHLPVERI-TMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD  151 (282)
T ss_pred             hCCCCCeEEEECCCccHHHHHHHhcCCcceE-EEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence            34555799999999999999999885 4322 247999999998887421      1    22233221 1222234899


Q ss_pred             eEEecCcCcCCCChh--HHHHHHHHhhccccCCcEEEEE
Q 037675          329 LVHASSGLDVGGQPE--KLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       329 lV~s~~~L~~~~~~~--~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      +|+....=. ..+-+  --+.++..+.|.|+|+|.++.-
T Consensus       152 vIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         152 VIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             EEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            999853221 11100  0137899999999999988665

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.46  E-value=0.00052  Score=62.80  Aligned_cols=51  Identities=24%  Similarity=0.203  Sum_probs=43.7

Q ss_pred             ccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          316 LDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       316 ~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .....+|.+++.|+|+|.+++.|..-.++ ..++.|.+|+|||||++-+..|
T Consensus        37 As~e~~F~dns~d~iyaeHvlEHlt~~Eg-~~alkechr~Lrp~G~LriAvP   87 (185)
T COG4627          37 ASNESMFEDNSVDAIYAEHVLEHLTYDEG-TSALKECHRFLRPGGKLRIAVP   87 (185)
T ss_pred             hhhhccCCCcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCcCcEEEEEcC
Confidence            44567899999999999999999876544 5799999999999999988776

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.45  E-value=0.0067  Score=62.08  Aligned_cols=84  Identities=14%  Similarity=0.183  Sum_probs=56.2

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhHH
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKL  345 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~l  345 (418)
                      .++||+||++|+|+..|.++|..|+  ++|.. +|-....+.+.+..+..+..++..+.+.+|+|+|..+-.    |.  
T Consensus       213 ~~vlDLGAsPGGWT~~L~~rG~~V~--AVD~g-~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~----P~--  283 (357)
T PRK11760        213 MRAVDLGAAPGGWTYQLVRRGMFVT--AVDNG-PMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK----PA--  283 (357)
T ss_pred             CEEEEeCCCCcHHHHHHHHcCCEEE--EEech-hcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC----HH--
Confidence            5899999999999999999998665  57844 344444555544555443333322367899999976543    33  


Q ss_pred             HHHHHHhhccccCC
Q 037675          346 EFLMFDFDRILRAG  359 (418)
Q Consensus       346 e~~L~Ei~RVLRPG  359 (418)
                       .+..-|.+.|..|
T Consensus       284 -rva~lm~~Wl~~g  296 (357)
T PRK11760        284 -RVAELMAQWLVNG  296 (357)
T ss_pred             -HHHHHHHHHHhcC
Confidence             5556666667665

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.45  E-value=0.035  Score=54.13  Aligned_cols=123  Identities=15%  Similarity=0.217  Sum_probs=80.4

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-Cceee-cccCCC---CCCCCccceEEecCcCcCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-FPLYL-SLDHRF---PFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-i~~~~-~~~e~L---Pf~d~sFDlV~s~~~L~~~~  340 (418)
                      +++||+|.-||+|+..+.++|..-| .++|+.-.|+.--..... +-.+. .++..+   .|. +..|+++|.-.|..  
T Consensus        81 kv~LDiGsSTGGFTd~lLq~gAk~V-yavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSFIS--  156 (245)
T COG1189          81 KVVLDIGSSTGGFTDVLLQRGAKHV-YAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSFIS--  156 (245)
T ss_pred             CEEEEecCCCccHHHHHHHcCCcEE-EEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeehhh--
Confidence            6899999999999999999986655 578998877754333332 11222 233322   122 26789999877753  


Q ss_pred             ChhHHHHHHHHhhccccCCcEEEEEe-c-ccC------------ch----hHHHHHHHHHHHcCcEEEEEEEcc
Q 037675          341 QPEKLEFLMFDFDRILRAGGLFWLDN-F-YCA------------ND----EKKSALTRLIERFGYKKLKWVVGE  396 (418)
Q Consensus       341 ~~~~le~~L~Ei~RVLRPGG~~ii~~-~-~~~------------~e----e~~~~~~~l~~~~Gfk~l~W~~~~  396 (418)
                          +..+|-.+..+|+|+|.++..- | |-.            ++    .....+...++..||..+.-...+
T Consensus       157 ----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Sp  226 (245)
T COG1189         157 ----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSP  226 (245)
T ss_pred             ----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccC
Confidence                3488999999999999875543 2 110            01    122456777888899877544433

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.38  E-value=0.0023  Score=61.33  Aligned_cols=122  Identities=20%  Similarity=0.249  Sum_probs=84.6

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceee--cccCCCCCCCCccceEEecCcCcCCCCh
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYL--SLDHRFPFYDNVFDLVHASSGLDVGGQP  342 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~--~~~e~LPf~d~sFDlV~s~~~L~~~~~~  342 (418)
                      ..++||+|+|.|..+..|+..--.+  .+.+.|..|.......+. .+..  .|.+    -+-.||+|.|-..+..-.++
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~feev--yATElS~tMr~rL~kk~y-nVl~~~ew~~----t~~k~dli~clNlLDRc~~p  185 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTFEEV--YATELSWTMRDRLKKKNY-NVLTEIEWLQ----TDVKLDLILCLNLLDRCFDP  185 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchHHHH--HHHHhhHHHHHHHhhcCC-ceeeehhhhh----cCceeehHHHHHHHHhhcCh
Confidence            4589999999999998887653222  345888889888877775 3322  2332    24469999998877755444


Q ss_pred             hHHHHHHHHhhccccC-CcEEEEEec--ccC-----------c------------hhHHHHHHHHHHHcCcEEEEEEEcc
Q 037675          343 EKLEFLMFDFDRILRA-GGLFWLDNF--YCA-----------N------------DEKKSALTRLIERFGYKKLKWVVGE  396 (418)
Q Consensus       343 ~~le~~L~Ei~RVLRP-GG~~ii~~~--~~~-----------~------------ee~~~~~~~l~~~~Gfk~l~W~~~~  396 (418)
                      -   ++|.+|.-||+| .|.+|+.-.  +.+           .            ++....+.++++..||..--|...+
T Consensus       186 ~---kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrlP  262 (288)
T KOG3987|consen  186 F---KLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRLP  262 (288)
T ss_pred             H---HHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcCC
Confidence            4   899999999999 898876531  111           0            1222457788999999877676544

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.35  E-value=0.045  Score=51.87  Aligned_cols=142  Identities=15%  Similarity=0.138  Sum_probs=73.0

Q ss_pred             CeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceee----------cccCCCCCCCCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYL----------SLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~----------~~~e~LPf~d~sFDlV~s~~  334 (418)
                      .+|||+||-.|+|+....++ +...+.+++|+-    .+.--+|...+..          ...|.+  |++..|+|++..
T Consensus        71 ~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll----h~~p~~Ga~~i~~~dvtdp~~~~ki~e~l--p~r~VdvVlSDM  144 (232)
T KOG4589|consen   71 DTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL----HIEPPEGATIIQGNDVTDPETYRKIFEAL--PNRPVDVVLSDM  144 (232)
T ss_pred             CEEEEccCCCChHHHHHHHhhCCCceEEEEeee----eccCCCCcccccccccCCHHHHHHHHHhC--CCCcccEEEecc
Confidence            48999999999999888776 433333456651    1111122211111          122344  578899999854


Q ss_pred             cCcCC----CChhH-HH---HHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceE
Q 037675          335 GLDVG----GQPEK-LE---FLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVY  406 (418)
Q Consensus       335 ~L~~~----~~~~~-le---~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~  406 (418)
                      .=...    .+... ++   .++.=..-.++|+|.|+.- . |.+++....-..|.+.  |++++-....-..++..|.|
T Consensus       145 apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK-~-w~g~e~~~l~r~l~~~--f~~Vk~vKP~Asr~eS~E~y  220 (232)
T KOG4589|consen  145 APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK-L-WDGSEEALLQRRLQAV--FTNVKKVKPDASRDESAETY  220 (232)
T ss_pred             CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE-E-ecCCchHHHHHHHHHH--hhhcEeeCCcccccccccee
Confidence            32211    11111 11   2233333457899988543 2 3333322222233333  66665322221223456999


Q ss_pred             EEEEEEcCCCC
Q 037675          407 LSAVLQKPVRV  417 (418)
Q Consensus       407 l~Ai~qKP~~~  417 (418)
                      +.+.-.|+...
T Consensus       221 ~v~~~~k~~~d  231 (232)
T KOG4589|consen  221 LVCLNFKGNVD  231 (232)
T ss_pred             eeeeeccCcCC
Confidence            99988887543

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=96.34  E-value=0.011  Score=58.42  Aligned_cols=68  Identities=21%  Similarity=0.212  Sum_probs=53.8

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCC-ccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDN-VFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~-sFDlV~s~~~  335 (418)
                      .+||+||+|.|.++..|++++-.++  ++++++.+++..+++-    -+.++++|+-.++|++- .++.|+++-=
T Consensus        32 d~VlEIGpG~GaLT~~Ll~~~~~v~--aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlP  104 (259)
T COG0030          32 DNVLEIGPGLGALTEPLLERAARVT--AIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANLP  104 (259)
T ss_pred             CeEEEECCCCCHHHHHHHhhcCeEE--EEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEcCC
Confidence            5899999999999999999986654  4688888888777663    23567788888888765 6888988643

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.18  E-value=0.2  Score=49.54  Aligned_cols=142  Identities=15%  Similarity=0.176  Sum_probs=83.0

Q ss_pred             eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCC--CCccceEEecCc---Cc----
Q 037675          267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFY--DNVFDLVHASSG---LD----  337 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~--d~sFDlV~s~~~---L~----  337 (418)
                      +|+|+-||.|++...|.+.|..++ .++|.++..++..+..--...+.++...+...  ...+|+++.+--   +.    
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v-~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~   80 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIV-AANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGK   80 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEE-EEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhh
Confidence            699999999999999988887776 57899888776554432212344555555322  356999998631   11    


Q ss_pred             --CCCC-hhHHHHHHHHhhccccCCcEEEEEeccc----CchhHHHHHHHHHHHcCcEEEEEEEcccCC---C-CccceE
Q 037675          338 --VGGQ-PEKLEFLMFDFDRILRAGGLFWLDNFYC----ANDEKKSALTRLIERFGYKKLKWVVGEKGE---T-GKSEVY  406 (418)
Q Consensus       338 --~~~~-~~~le~~L~Ei~RVLRPGG~~ii~~~~~----~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d---~-~~~e~~  406 (418)
                        ...+ ...+-..+.++-+.+||. +|++.....    ...+..+.+...++.+||. +.|.+..-.+   + .|..+|
T Consensus        81 ~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~-~~~~~l~a~~~GvPQ~R~R~~  158 (275)
T cd00315          81 RKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYN-VYWKLLNASDYGVPQNRERVF  158 (275)
T ss_pred             cCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcE-EEEEEEEHHHcCCCCCCcEEE
Confidence              1112 221222333444455676 344544311    1123345577778999997 5666544323   2 455666


Q ss_pred             EEEEE
Q 037675          407 LSAVL  411 (418)
Q Consensus       407 l~Ai~  411 (418)
                      +.++.
T Consensus       159 ~ia~~  163 (275)
T cd00315         159 IIGIR  163 (275)
T ss_pred             EEEEe
Confidence            66664

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=96.14  E-value=0.083  Score=55.19  Aligned_cols=121  Identities=15%  Similarity=0.105  Sum_probs=79.9

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHH----cCCC----ceeeccc----CCCCCCCCccceEEe
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAA----RGLF----PLYLSLD----HRFPFYDNVFDLVHA  332 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~e----RGli----~~~~~~~----e~LPf~d~sFDlV~s  332 (418)
                      ++|||+=|=||+|+.+.+..|. .|+  .+|.|...++.|++    .|+.    .++.+++    +.+--...+||+|+.
T Consensus       219 krvLNlFsYTGgfSv~Aa~gGA~~vt--~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil  296 (393)
T COG1092         219 KRVLNLFSYTGGFSVHAALGGASEVT--SVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL  296 (393)
T ss_pred             CeEEEecccCcHHHHHHHhcCCCceE--EEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence            4899999999999999999886 554  47999988877665    4552    2333322    222223459999998


Q ss_pred             c-CcCc-----CCCChhHHHHHHHHhhccccCCcEEEEEecccC--chhHHHHHHHHHHHcCcE
Q 037675          333 S-SGLD-----VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA--NDEKKSALTRLIERFGYK  388 (418)
Q Consensus       333 ~-~~L~-----~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~--~ee~~~~~~~l~~~~Gfk  388 (418)
                      . =.|.     -|.-..+...++....++|+|||+++++.-...  .+...+.+...+...|..
T Consensus       297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~  360 (393)
T COG1092         297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRR  360 (393)
T ss_pred             CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCc
Confidence            3 1111     133344567889999999999999988765433  234445555555555443

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=96.07  E-value=0.12  Score=53.13  Aligned_cols=126  Identities=17%  Similarity=0.189  Sum_probs=82.2

Q ss_pred             CCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHH----HHHcCC---CceeecccCCCCCCCCccceEEec
Q 037675          261 GSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEF----IAARGL---FPLYLSLDHRFPFYDNVFDLVHAS  333 (418)
Q Consensus       261 ~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~----a~eRGl---i~~~~~~~e~LPf~d~sFDlV~s~  333 (418)
                      .+|+  +|+||=+|.|.|+..+++.+...| +++|+++..++.    ++..++   +..+.+++..++..-+.||-|++.
T Consensus       187 ~~GE--~V~DmFAGVGpfsi~~Ak~g~~~V-~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~  263 (341)
T COG2520         187 KEGE--TVLDMFAGVGPFSIPIAKKGRPKV-YAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMG  263 (341)
T ss_pred             cCCC--EEEEccCCcccchhhhhhcCCceE-EEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeC
Confidence            4464  899999999999999999874422 467888765544    444444   345668888887766899999986


Q ss_pred             CcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch---hHHHHHHHHHHHcCcE--EEEEEEcc
Q 037675          334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND---EKKSALTRLIERFGYK--KLKWVVGE  396 (418)
Q Consensus       334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e---e~~~~~~~l~~~~Gfk--~l~W~~~~  396 (418)
                      .--.       -..++....+.+|+||.+-.-.+....+   ...+.+.......|++  .+.|....
T Consensus       264 ~p~~-------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~Vk  324 (341)
T COG2520         264 LPKS-------AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVK  324 (341)
T ss_pred             CCCc-------chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEec
Confidence            5321       1156777888899999874443322221   1235567777777753  34454443

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.05  E-value=0.064  Score=54.50  Aligned_cols=102  Identities=16%  Similarity=0.104  Sum_probs=64.2

Q ss_pred             CeEEEECCccChHHHHHhh----cC--cEEEEeccCCCHHhHHHHHHcCC---Cc-e----eeccc----CCCCC--CCC
Q 037675          266 RIGFDIGGGSGTFAARMAE----RN--VTVITNTLNVDAPYSEFIAARGL---FP-L----YLSLD----HRFPF--YDN  325 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~----~g--V~vv~~alD~s~~~l~~a~eRGl---i~-~----~~~~~----e~LPf--~d~  325 (418)
                      ..++|+|||.|.=...|.+    .+  ++.  +++|+|.++++.+.++-.   .| +    +.++.    ..+|-  ...
T Consensus        78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y--~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~  155 (319)
T TIGR03439        78 SMLVELGSGNLRKVGILLEALERQKKSVDY--YALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS  155 (319)
T ss_pred             CEEEEECCCchHHHHHHHHHHHhcCCCceE--EEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence            3799999999976544432    22  443  358999999987655311   12 2    12211    22322  233


Q ss_pred             ccceEEec-CcCcCCCChhHHHHHHHHhhc-cccCCcEEEEEecccC
Q 037675          326 VFDLVHAS-SGLDVGGQPEKLEFLMFDFDR-ILRAGGLFWLDNFYCA  370 (418)
Q Consensus       326 sFDlV~s~-~~L~~~~~~~~le~~L~Ei~R-VLRPGG~~ii~~~~~~  370 (418)
                      ...+++.- .++.+..+.+ ...+|.++.+ .|+|||.|+|.--.++
T Consensus       156 ~~r~~~flGSsiGNf~~~e-a~~fL~~~~~~~l~~~d~lLiG~D~~k  201 (319)
T TIGR03439       156 RPTTILWLGSSIGNFSRPE-AAAFLAGFLATALSPSDSFLIGLDGCK  201 (319)
T ss_pred             CccEEEEeCccccCCCHHH-HHHHHHHHHHhhCCCCCEEEEecCCCC
Confidence            45676664 5788876544 5689999999 9999999988644443

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK13699 putative methylase; Provisional

Probab=96.04  E-value=0.021  Score=55.06  Aligned_cols=76  Identities=16%  Similarity=0.114  Sum_probs=46.3

Q ss_pred             eeecccCCC--CCCCCccceEEec--CcC--cCC-C-------ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHH
Q 037675          312 LYLSLDHRF--PFYDNVFDLVHAS--SGL--DVG-G-------QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSA  377 (418)
Q Consensus       312 ~~~~~~e~L--Pf~d~sFDlV~s~--~~L--~~~-~-------~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~  377 (418)
                      ++++++.++  .++++++|+|++.  +.+  ... .       ..+-++.++.|+.|||||||.+++-..+..   . ..
T Consensus         4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~---~-~~   79 (227)
T PRK13699          4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNR---V-DR   79 (227)
T ss_pred             EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecccc---H-HH
Confidence            344555433  4679999999986  211  110 0       012245789999999999998875322111   1 23


Q ss_pred             HHHHHHHcCcEEEE
Q 037675          378 LTRLIERFGYKKLK  391 (418)
Q Consensus       378 ~~~l~~~~Gfk~l~  391 (418)
                      +..+++..||....
T Consensus        80 ~~~al~~~GF~l~~   93 (227)
T PRK13699         80 FMAAWKNAGFSVVG   93 (227)
T ss_pred             HHHHHHHCCCEEee
Confidence            55667889997554

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=95.94  E-value=0.081  Score=53.62  Aligned_cols=142  Identities=18%  Similarity=0.158  Sum_probs=88.1

Q ss_pred             CCcHHHHHHHHccCC--C---CCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhH---HHHHHc----C---CCce
Q 037675          248 GKNDFLIDDVLALGS--G---GIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYS---EFIAAR----G---LFPL  312 (418)
Q Consensus       248 ~~y~~~I~~lL~l~~--g---~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l---~~a~eR----G---li~~  312 (418)
                      .-|...|+++-.+-+  +   +.-.||==|||.|+++..|+..|..+-|+  +.|.-|+   .++..-    +   +.|+
T Consensus       129 ~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGN--EfSy~Mli~S~FiLN~~~~~nq~~IYPf  206 (369)
T KOG2798|consen  129 QLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGN--EFSYFMLICSSFILNYCKQENQFTIYPF  206 (369)
T ss_pred             hhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhccccccc--HHHHHHHHHHHHHHHhhccCCcEEEEee
Confidence            357778887654422  1   12368999999999999999999887764  4455444   344321    1   1122


Q ss_pred             eec--------------------------ccCCC-------------CCCCCccceEEecCcCcCCCChhHHHHHHHHhh
Q 037675          313 YLS--------------------------LDHRF-------------PFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFD  353 (418)
Q Consensus       313 ~~~--------------------------~~e~L-------------Pf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~  353 (418)
                      ++.                          ..+.+             +-..++||+|+....+.-.   .++-.++.-|.
T Consensus       207 Ih~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa---~NileYi~tI~  283 (369)
T KOG2798|consen  207 IHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA---HNILEYIDTIY  283 (369)
T ss_pred             eeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech---HHHHHHHHHHH
Confidence            221                          01111             1112469999887444332   34558999999


Q ss_pred             ccccCCcEEEEEec--c--cC--c-------hhHHHHHHHHHHHcCcEEEEEEE
Q 037675          354 RILRAGGLFWLDNF--Y--CA--N-------DEKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       354 RVLRPGG~~ii~~~--~--~~--~-------ee~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      .+|||||+++=.+|  +  ..  +       +-.-+.+..+++..||+.++-+.
T Consensus       284 ~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~~  337 (369)
T KOG2798|consen  284 KILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKERG  337 (369)
T ss_pred             HhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEeee
Confidence            99999998866665  1  11  0       11135688899999999887553

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.79  E-value=0.39  Score=46.16  Aligned_cols=166  Identities=16%  Similarity=0.182  Sum_probs=93.5

Q ss_pred             cCcccccccccccCCcHHHHHH---HHccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCH----HhHHHHHH
Q 037675          235 DNPNENQRYIKARGKNDFLIDD---VLALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDA----PYSEFIAA  306 (418)
Q Consensus       235 w~~~e~~~W~~~~~~y~~~I~~---lL~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~----~~l~~a~e  306 (418)
                      |.+.+-+.|.-........|-.   .+++++|+  +||=+|+-+|+...+.++- + .....+++.++    ..+..+.+
T Consensus        46 ~~~~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~--~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~  122 (231)
T COG1889          46 VEGEEYREWNPRRSKLAAAILKGLKNFPIKEGS--KVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK  122 (231)
T ss_pred             ecCcceeeeCcchhHHHHHHHcCcccCCcCCCC--EEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh
Confidence            4455566775432221121211   12355664  8999999999999888875 3 11113456665    34556777


Q ss_pred             c-CCCceeeccc--CCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC------chhHHHH
Q 037675          307 R-GLFPLYLSLD--HRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA------NDEKKSA  377 (418)
Q Consensus       307 R-Gli~~~~~~~--e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~------~ee~~~~  377 (418)
                      | +++|.+.+..  +...+.-+..|+|+..     ..++...+-+...+..-||+||++++.--...      .++.-+.
T Consensus       123 R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~  197 (231)
T COG1889         123 RPNIIPILEDARKPEKYRHLVEKVDVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKD  197 (231)
T ss_pred             CCCceeeecccCCcHHhhhhcccccEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHH
Confidence            6 5667766532  2222334568888863     34455667889999999999998877644221      1222222


Q ss_pred             HHHHHHHcCcEEEEEEEcccCCCCccceEEEEE
Q 037675          378 LTRLIERFGYKKLKWVVGEKGETGKSEVYLSAV  410 (418)
Q Consensus       378 ~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai  410 (418)
                      -..-++..+|+.+.-...+-  -++++..+.+.
T Consensus       198 ev~kL~~~~f~i~e~~~LeP--ye~DH~~i~~~  228 (231)
T COG1889         198 EVEKLEEGGFEILEVVDLEP--YEKDHALIVAK  228 (231)
T ss_pred             HHHHHHhcCceeeEEeccCC--cccceEEEEEe
Confidence            23345566777664222111  24667555443

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=95.76  E-value=0.014  Score=60.58  Aligned_cols=92  Identities=15%  Similarity=0.109  Sum_probs=62.9

Q ss_pred             eEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCC-CCCCCccceEEecCcCc
Q 037675          267 IGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRF-PFYDNVFDLVHASSGLD  337 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~L-Pf~d~sFDlV~s~~~L~  337 (418)
                      +|||+-||+|..+.+++.+  |+.-+ ++.|.++..++.+++    .++  +.++.+++..+ ....+.||+|...    
T Consensus        47 ~vLD~faGsG~rgir~a~e~~ga~~V-v~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD----  121 (374)
T TIGR00308        47 NIADALSASGIRAIRYAHEIEGVREV-FANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID----  121 (374)
T ss_pred             EEEECCCchhHHHHHHHhhCCCCCEE-EEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC----
Confidence            7999999999999999887  54332 347888877765543    333  23344443332 2223579999863    


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +...+.   .++..+.+.+++||++.++.
T Consensus       122 PfGs~~---~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       122 PFGTPA---PFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             CCCCcH---HHHHHHHHhcccCCEEEEEe
Confidence            333333   78889999999999998874

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=95.70  E-value=0.017  Score=58.07  Aligned_cols=77  Identities=19%  Similarity=0.139  Sum_probs=51.5

Q ss_pred             HHHHHHc---cCCCCCCeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCC
Q 037675          253 LIDDVLA---LGSGGIRIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPF  322 (418)
Q Consensus       253 ~I~~lL~---l~~g~~r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf  322 (418)
                      +++++|.   +.+|  .+++|.+||.|+.+..+++..   ..++  ++|.++.+++.++++-    -+.+++++...+.-
T Consensus         7 ll~Evl~~L~~~pg--~~vlD~TlG~GGhS~~il~~~~~~g~Vi--giD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~   82 (296)
T PRK00050          7 LLDEVVDALAIKPD--GIYVDGTFGGGGHSRAILERLGPKGRLI--AIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKE   82 (296)
T ss_pred             cHHHHHHhhCCCCC--CEEEEeCcCChHHHHHHHHhCCCCCEEE--EEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHH
Confidence            3445544   3344  489999999999999999873   4554  5899999999887652    23445554444321


Q ss_pred             -CC---CccceEEec
Q 037675          323 -YD---NVFDLVHAS  333 (418)
Q Consensus       323 -~d---~sFDlV~s~  333 (418)
                       .+   .+||.|++.
T Consensus        83 ~l~~~~~~vDgIl~D   97 (296)
T PRK00050         83 VLAEGLGKVDGILLD   97 (296)
T ss_pred             HHHcCCCccCEEEEC
Confidence             11   278998885

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=95.60  E-value=0.17  Score=51.85  Aligned_cols=129  Identities=19%  Similarity=0.184  Sum_probs=64.8

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCCc--eeecccCCC------
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLFP--LYLSLDHRF------  320 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli~--~~~~~~e~L------  320 (418)
                      +++.++.+-.....+|||+=||+|.|+..|++..-.|+  +++.++.+++.|++    .|+..  ++.+.++++      
T Consensus       185 l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~--gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~  262 (352)
T PF05958_consen  185 LYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVI--GVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAK  262 (352)
T ss_dssp             HHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEE--EEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCC
T ss_pred             HHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEE--EeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHh
Confidence            44444443222223799999999999999999876665  46888888876543    45532  233333222      


Q ss_pred             ----------CCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675          321 ----------PFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL  390 (418)
Q Consensus       321 ----------Pf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l  390 (418)
                                ......+|+|+.    .+  ++.++...+.+.-  .++.=.++|+   |+...+...+..+. + ||+..
T Consensus       263 ~r~~~~~~~~~~~~~~~d~vil----DP--PR~G~~~~~~~~~--~~~~~ivYvS---CnP~tlaRDl~~L~-~-~y~~~  329 (352)
T PF05958_consen  263 AREFNRLKGIDLKSFKFDAVIL----DP--PRAGLDEKVIELI--KKLKRIVYVS---CNPATLARDLKILK-E-GYKLE  329 (352)
T ss_dssp             S-GGTTGGGS-GGCTTESEEEE---------TT-SCHHHHHHH--HHSSEEEEEE---S-HHHHHHHHHHHH-C-CEEEE
T ss_pred             hHHHHhhhhhhhhhcCCCEEEE----cC--CCCCchHHHHHHH--hcCCeEEEEE---CCHHHHHHHHHHHh-h-cCEEE
Confidence                      122346888874    22  2223223222222  2444455555   44444444454443 3 88866


Q ss_pred             EEEEcc
Q 037675          391 KWVVGE  396 (418)
Q Consensus       391 ~W~~~~  396 (418)
                      +....+
T Consensus       330 ~v~~~D  335 (352)
T PF05958_consen  330 KVQPVD  335 (352)
T ss_dssp             EEEEE-
T ss_pred             EEEEee
Confidence            554433

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=95.50  E-value=0.18  Score=48.57  Aligned_cols=114  Identities=22%  Similarity=0.227  Sum_probs=68.3

Q ss_pred             CeEEEECCccChHHHHHh--hc--CcEEEEeccCCCH---HhHHHH-HHcCCC--ceeecccCCCCCCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMA--ER--NVTVITNTLNVDA---PYSEFI-AARGLF--PLYLSLDHRFPFYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La--~~--gV~vv~~alD~s~---~~l~~a-~eRGli--~~~~~~~e~LPf~d~sFDlV~s~~~  335 (418)
                      .+++|||.|.|--+.-|+  ..  .++.    +|...   .+++.+ .+-|+.  .++++-+|.+.-..+.||+|.|-.+
T Consensus        69 ~~~~DIGSGaGfPGipLAI~~p~~~vtL----les~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv  144 (215)
T COG0357          69 KRVLDIGSGAGFPGIPLAIAFPDLKVTL----LESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV  144 (215)
T ss_pred             CEEEEeCCCCCCchhhHHHhccCCcEEE----EccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc
Confidence            589999999998776665  22  3444    46653   566544 445663  4455777776532222999998553


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      -.       +..++.=....||+||+++.--+....++. .+.+......|+...+
T Consensus       145 a~-------L~~l~e~~~pllk~~g~~~~~k~~~~~~e~-~e~~~a~~~~~~~~~~  192 (215)
T COG0357         145 AS-------LNVLLELCLPLLKVGGGFLAYKGLAGKDEL-PEAEKAILPLGGQVEK  192 (215)
T ss_pred             cc-------hHHHHHHHHHhcccCCcchhhhHHhhhhhH-HHHHHHHHhhcCcEEE
Confidence            32       225555667889999987443333322332 2345556666676554

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=95.32  E-value=0.08  Score=52.60  Aligned_cols=111  Identities=15%  Similarity=0.148  Sum_probs=60.4

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhh---------cCcEEEEeccCCCHHhHHHHHH----cCCC----ceeec
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAE---------RNVTVITNTLNVDAPYSEFIAA----RGLF----PLYLS  315 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~---------~gV~vv~~alD~s~~~l~~a~e----RGli----~~~~~  315 (418)
                      +|.+++....+  .+|+|-.||+|+|...+.+         ....+.  +.|+++.+...+..    +|.-    ....+
T Consensus        37 l~~~~~~~~~~--~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~--G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~  112 (311)
T PF02384_consen   37 LMVKLLNPKKG--DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIY--GIEIDPEAVALAKLNLLLHGIDNSNINIIQG  112 (311)
T ss_dssp             HHHHHHTT-TT--EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEE--EEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred             HHHhhhhcccc--ceeechhhhHHHHHHHHHHhhcccccccccceeE--eecCcHHHHHHHHhhhhhhcccccccccccc
Confidence            34444444433  4799999999999877665         234444  47888877765543    3321    13333


Q ss_pred             ccCCCCC-C-CCccceEEec--CcCcCCCC----------------hhHHHHHHHHhhccccCCcEEEEEec
Q 037675          316 LDHRFPF-Y-DNVFDLVHAS--SGLDVGGQ----------------PEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       316 ~~e~LPf-~-d~sFDlV~s~--~~L~~~~~----------------~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +.-..+. . .+.||+|+++  .....|..                ...--.++..+.+.||+||++.+.-+
T Consensus       113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp  184 (311)
T PF02384_consen  113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP  184 (311)
T ss_dssp             -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence            3322222 2 5789999996  22220100                01112477889999999998755444

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=95.25  E-value=0.27  Score=52.80  Aligned_cols=42  Identities=17%  Similarity=0.136  Sum_probs=29.6

Q ss_pred             CCeEEEECCccChHHHHHhhcC--------cEEEEeccCCCHHhHHHHHH
Q 037675          265 IRIGFDIGGGSGTFAARMAERN--------VTVITNTLNVDAPYSEFIAA  306 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~g--------V~vv~~alD~s~~~l~~a~e  306 (418)
                      ..+|||.+||+|.|...++++.        +..-..+.|+++..++.++.
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~   81 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK   81 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence            3489999999999987776542        22222468998887776654

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=95.25  E-value=0.069  Score=50.90  Aligned_cols=129  Identities=13%  Similarity=0.162  Sum_probs=71.8

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc-CcE--EEEec-cCC-------CHHhHHHHHHcCCC--ceeecccCCCCCCCC
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER-NVT--VITNT-LNV-------DAPYSEFIAARGLF--PLYLSLDHRFPFYDN  325 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~-gV~--vv~~a-lD~-------s~~~l~~a~eRGli--~~~~~~~e~LPf~d~  325 (418)
                      .+++|.  +|+|+=-|.|.|+.-|+.. +.+  |-+++ .+.       .+.+...+++.+..  ..+....-.++ +++
T Consensus        45 Glkpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq  121 (238)
T COG4798          45 GLKPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQ  121 (238)
T ss_pred             ccCCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCC
Confidence            367774  8999999999999888865 322  21122 111       12222233333221  12222333444 556


Q ss_pred             ccceEEecC---cCcC-CCChhHHHHHHHHhhccccCCcEEEEEecccC-c---hh-------HHHHHHHHHHHcCcEEE
Q 037675          326 VFDLVHASS---GLDV-GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA-N---DE-------KKSALTRLIERFGYKKL  390 (418)
Q Consensus       326 sFDlV~s~~---~L~~-~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-~---ee-------~~~~~~~l~~~~Gfk~l  390 (418)
                      ..|++....   .+|. ..++...+++..++++.|||||.+.+.+-... +   .+       ......+..+..||+..
T Consensus       122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~  201 (238)
T COG4798         122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLE  201 (238)
T ss_pred             cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceee
Confidence            666666532   2221 11134456999999999999998877654221 1   11       12346667788899754

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=95.10  E-value=0.12  Score=51.85  Aligned_cols=123  Identities=14%  Similarity=0.111  Sum_probs=70.8

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHH----cCCC----ceeecccCC-CC--CCCCccceEEec
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAA----RGLF----PLYLSLDHR-FP--FYDNVFDLVHAS  333 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~e----RGli----~~~~~~~e~-LP--f~d~sFDlV~s~  333 (418)
                      ++|||+=|=||+|+.+.+..|. .|+  .+|.|...++.+++    .|+-    .++..++-. +.  -..+.||+|++.
T Consensus       125 krvLnlFsYTGgfsv~Aa~gGA~~v~--~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD  202 (286)
T PF10672_consen  125 KRVLNLFSYTGGFSVAAAAGGAKEVV--SVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD  202 (286)
T ss_dssp             CEEEEET-TTTHHHHHHHHTTESEEE--EEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred             CceEEecCCCCHHHHHHHHCCCCEEE--EEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence            5999999999999999888885 343  48999998887665    3542    222222211 11  024689999983


Q ss_pred             ---CcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC--chhHHHHHHHHHHHcCcEEEEE
Q 037675          334 ---SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA--NDEKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       334 ---~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~--~ee~~~~~~~l~~~~Gfk~l~W  392 (418)
                         ..=..+.-..+...++....++|+|||++++..-...  .+.+.+.+......  ++.+.+
T Consensus       203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~--~~~~~~  264 (286)
T PF10672_consen  203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAARE--VEFIER  264 (286)
T ss_dssp             -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHH--CEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCcc--ceEeee
Confidence               2111222234566788899999999999866543222  23333434444444  444443

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=95.04  E-value=0.059  Score=47.75  Aligned_cols=53  Identities=25%  Similarity=0.363  Sum_probs=36.7

Q ss_pred             HHHHHHcc--CCCCCCeEEEECCccChHHHHHhh-----c-CcEEEEeccCCCHHhHHHHHHc
Q 037675          253 LIDDVLAL--GSGGIRIGFDIGGGSGTFAARMAE-----R-NVTVITNTLNVDAPYSEFIAAR  307 (418)
Q Consensus       253 ~I~~lL~l--~~g~~r~VLDvGCGtG~faa~La~-----~-gV~vv~~alD~s~~~l~~a~eR  307 (418)
                      +|..++..  .......|+|+|||.|.++..|+.     . +..++  ++|.++..++.+.++
T Consensus        12 ~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~--~iD~~~~~~~~a~~~   72 (141)
T PF13679_consen   12 LIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVL--GIDCNESLVESAQKR   72 (141)
T ss_pred             HHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEE--EEECCcHHHHHHHHH
Confidence            45554432  223456899999999999999988     4 56665  478887777655443

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=94.97  E-value=0.037  Score=56.75  Aligned_cols=109  Identities=11%  Similarity=0.071  Sum_probs=63.1

Q ss_pred             eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCC-C-------C---C-----C
Q 037675          267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRF-P-------F---Y-----D  324 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~L-P-------f---~-----d  324 (418)
                      +|||++||+|.++..|++..-.+  +++|.++.+++.+++    .|+  +.++.++.+++ +       +   .     .
T Consensus       200 ~vlDl~~G~G~~sl~la~~~~~v--~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  277 (353)
T TIGR02143       200 DLLELYCGNGNFSLALAQNFRRV--LATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS  277 (353)
T ss_pred             cEEEEeccccHHHHHHHHhCCEE--EEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence            59999999999999998775444  357999999987765    344  23444443331 1       1   0     1


Q ss_pred             CccceEEecCcCcCCCChhH-HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          325 NVFDLVHASSGLDVGGQPEK-LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       325 ~sFDlV~s~~~L~~~~~~~~-le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      ..||+|+..    +-  +.+ .+.++.-+   ++|++.++|+.   ....+...+..+.+  ||+..+
T Consensus       278 ~~~d~v~lD----PP--R~G~~~~~l~~l---~~~~~ivYvsC---~p~tlaRDl~~L~~--~Y~l~~  331 (353)
T TIGR02143       278 YNCSTIFVD----PP--RAGLDPDTCKLV---QAYERILYISC---NPETLKANLEQLSE--THRVER  331 (353)
T ss_pred             CCCCEEEEC----CC--CCCCcHHHHHHH---HcCCcEEEEEc---CHHHHHHHHHHHhc--CcEEEE
Confidence            137988852    21  122 12444444   44899888874   33333333444432  365443

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=94.94  E-value=0.026  Score=52.67  Aligned_cols=100  Identities=15%  Similarity=0.111  Sum_probs=59.1

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCCc---eeecc-cCCC---CCCCCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLFP---LYLSL-DHRF---PFYDNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli~---~~~~~-~e~L---Pf~d~sFDlV~s~~  334 (418)
                      .+|||+=||+|.++....+||..-+ ..+|.+....+.+++    -+...   ++..+ ...+   .-....||+|++.=
T Consensus        44 ~~vLDLFaGSGalGlEALSRGA~~v-~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP  122 (183)
T PF03602_consen   44 ARVLDLFAGSGALGLEALSRGAKSV-VFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP  122 (183)
T ss_dssp             -EEEETT-TTSHHHHHHHHTT-SEE-EEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred             CeEEEcCCccCccHHHHHhcCCCeE-EEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence            3899999999999999999985433 246888766654443    24322   23322 2222   22478999999741


Q ss_pred             cCcCCCChhHHHHHHHHhh--ccccCCcEEEEEeccc
Q 037675          335 GLDVGGQPEKLEFLMFDFD--RILRAGGLFWLDNFYC  369 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~--RVLRPGG~~ii~~~~~  369 (418)
                         ++........++..+.  .+|+++|.+++.+...
T Consensus       123 ---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  123 ---PYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             ---STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             ---CcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence               1211111246666666  8999999998877543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=94.76  E-value=0.082  Score=51.76  Aligned_cols=73  Identities=23%  Similarity=0.352  Sum_probs=52.2

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCCceeecccCCCCCCC---CccceE
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLFPLYLSLDHRFPFYD---NVFDLV  330 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli~~~~~~~e~LPf~d---~sFDlV  330 (418)
                      +.+..+  ..|||+|.|+|.++..|.+++-.++  +++.++.+.+...++    +-+.++.++...+.+++   +.-..|
T Consensus        26 ~~~~~~--~~VlEiGpG~G~lT~~L~~~~~~v~--~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~v  101 (262)
T PF00398_consen   26 LDLSEG--DTVLEIGPGPGALTRELLKRGKRVI--AVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLV  101 (262)
T ss_dssp             HTCGTT--SEEEEESSTTSCCHHHHHHHSSEEE--EEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEE
T ss_pred             cCCCCC--CEEEEeCCCCccchhhHhcccCcce--eecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEE
Confidence            344433  5899999999999999999874443  468889888887774    22456677888887765   456667


Q ss_pred             EecC
Q 037675          331 HASS  334 (418)
Q Consensus       331 ~s~~  334 (418)
                      +++-
T Consensus       102 v~Nl  105 (262)
T PF00398_consen  102 VGNL  105 (262)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7653

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=94.59  E-value=0.0088  Score=49.81  Aligned_cols=92  Identities=21%  Similarity=0.214  Sum_probs=35.2

Q ss_pred             EEECCccChHHHHHhhc---Cc--EEEEeccCCCH---HhHHHHHHcCC---CceeecccC-CCC-CCCCccceEEecCc
Q 037675          269 FDIGGGSGTFAARMAER---NV--TVITNTLNVDA---PYSEFIAARGL---FPLYLSLDH-RFP-FYDNVFDLVHASSG  335 (418)
Q Consensus       269 LDvGCGtG~faa~La~~---gV--~vv~~alD~s~---~~l~~a~eRGl---i~~~~~~~e-~LP-f~d~sFDlV~s~~~  335 (418)
                      |++|+..|..+..|++.   +.  .+.  ++|..+   ...+.+++.++   +.++.++.. -++ ++++.||+++....
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~--~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLY--SVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD   78 (106)
T ss_dssp             --------------------------E--EEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred             CccccccccccccccccccccccCCEE--EEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence            68999999888777653   21  333  357766   33344444333   233444322 122 22689999997542


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                          +..+.....+..+.+.|+|||.+++.|
T Consensus        79 ----H~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   79 ----HSYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             ----CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence                223455577889999999999998875

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.48  E-value=0.024  Score=52.53  Aligned_cols=116  Identities=17%  Similarity=0.155  Sum_probs=72.5

Q ss_pred             CeEEEECCccChHHHHHhhc-----CcEEEEeccCCCHHhHH---HHHHcCCC----ce--e--ecccCCCCCCCCccce
Q 037675          266 RIGFDIGGGSGTFAARMAER-----NVTVITNTLNVDAPYSE---FIAARGLF----PL--Y--LSLDHRFPFYDNVFDL  329 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-----gV~vv~~alD~s~~~l~---~a~eRGli----~~--~--~~~~e~LPf~d~sFDl  329 (418)
                      +.||++|.|.-++|..|...     .|++.    |-++..++   .+..++..    ..  +  +-+..+.....++||+
T Consensus        31 ~~ilelgggft~laglmia~~a~~~~v~lt----dgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDi  106 (201)
T KOG3201|consen   31 RRILELGGGFTGLAGLMIACKAPDSSVWLT----DGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDI  106 (201)
T ss_pred             HHHHHhcCchhhhhhhheeeecCCceEEEe----cCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccE
Confidence            58999999987777655543     24443    66655443   34444421    11  0  1122233345679999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL  390 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l  390 (418)
                      |.|+.|+-.-...   +.++.-|.+.|||.|.-++..|...+ .+ +.+.......||...
T Consensus       107 IlaADClFfdE~h---~sLvdtIk~lL~p~g~Al~fsPRRg~-sL-~kF~de~~~~gf~v~  162 (201)
T KOG3201|consen  107 ILAADCLFFDEHH---ESLVDTIKSLLRPSGRALLFSPRRGQ-SL-QKFLDEVGTVGFTVC  162 (201)
T ss_pred             EEeccchhHHHHH---HHHHHHHHHHhCcccceeEecCcccc-hH-HHHHHHHHhceeEEE
Confidence            9999998754333   48889999999999998777664432 22 336666777777643

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=94.38  E-value=0.21  Score=55.76  Aligned_cols=75  Identities=15%  Similarity=0.045  Sum_probs=46.3

Q ss_pred             eccCCCHHhHHHHHH----cCC---CceeecccCCCCCC--CCccceEEecCcC-cCCCChhHHHHHHHHhhcccc---C
Q 037675          292 NTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFY--DNVFDLVHASSGL-DVGGQPEKLEFLMFDFDRILR---A  358 (418)
Q Consensus       292 ~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~--d~sFDlV~s~~~L-~~~~~~~~le~~L~Ei~RVLR---P  358 (418)
                      +++|+++.+++.|++    .|+   +.+..++..+++.+  .++||+|+++==+ ..+....+++.+..++.+.||   |
T Consensus       260 ~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~  339 (702)
T PRK11783        260 YGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFG  339 (702)
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCC
Confidence            468999999887655    365   34455677777654  3589999997211 122333344555555555555   8


Q ss_pred             CcEEEEEe
Q 037675          359 GGLFWLDN  366 (418)
Q Consensus       359 GG~~ii~~  366 (418)
                      |+.+++..
T Consensus       340 g~~~~llt  347 (702)
T PRK11783        340 GWNAALFS  347 (702)
T ss_pred             CCeEEEEe
Confidence            98886654

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=94.33  E-value=0.5  Score=47.25  Aligned_cols=127  Identities=16%  Similarity=0.139  Sum_probs=77.6

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCC--CC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRF--PF  322 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~L--Pf  322 (418)
                      +|-.+|.+.+|.  +|++-|.|.|+++.+++.. +.+.--++.|.++...+.|++    .|+   +.+.+-+....  +.
T Consensus        96 ~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~  173 (314)
T KOG2915|consen   96 MILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI  173 (314)
T ss_pred             HHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence            566778899986  8999999999999888865 333222346888766655544    454   23344343333  33


Q ss_pred             CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          323 YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       323 ~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      .+..+|.|+... ..+|       .++--.+.+||-+|.- +..|..-.|+.+ .--+++..+||..+.
T Consensus       174 ks~~aDaVFLDl-PaPw-------~AiPha~~~lk~~g~r-~csFSPCIEQvq-rtce~l~~~gf~~i~  232 (314)
T KOG2915|consen  174 KSLKADAVFLDL-PAPW-------EAIPHAAKILKDEGGR-LCSFSPCIEQVQ-RTCEALRSLGFIEIE  232 (314)
T ss_pred             cccccceEEEcC-CChh-------hhhhhhHHHhhhcCce-EEeccHHHHHHH-HHHHHHHhCCCceEE
Confidence            468899998532 3334       3444566699988843 223322223333 234556777887664

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=94.29  E-value=0.052  Score=47.18  Aligned_cols=38  Identities=16%  Similarity=0.225  Sum_probs=29.4

Q ss_pred             eEEEECCccChHHHHHhhcCc--EEEEeccCCCHHhHHHHHH
Q 037675          267 IGFDIGGGSGTFAARMAERNV--TVITNTLNVDAPYSEFIAA  306 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~gV--~vv~~alD~s~~~l~~a~e  306 (418)
                      ++||+|||+|.++..+++.+.  .+  .++|+++.+.+.+++
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v--~~~E~~~~~~~~l~~   40 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRV--IAFEPLPDAYEILEE   40 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEE--EEEecCHHHHHHHHH
Confidence            589999999999999988753  34  357999887765544

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=94.16  E-value=1.4  Score=42.01  Aligned_cols=117  Identities=14%  Similarity=0.028  Sum_probs=71.3

Q ss_pred             EEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCC---ceeec-ccCCCCCCCCc-cceEEecCcCcC
Q 037675          268 GFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLF---PLYLS-LDHRFPFYDNV-FDLVHASSGLDV  338 (418)
Q Consensus       268 VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli---~~~~~-~~e~LPf~d~s-FDlV~s~~~L~~  338 (418)
                      |.||||-.|.++.+|.++|..--.++.|+++.-++.|.+    .|+.   .+..+ ..+.+  .++. .|.|+..++=- 
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l--~~~e~~d~ivIAGMGG-   77 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVL--KPGEDVDTIVIAGMGG-   77 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG----GGG---EEEEEEE-H-
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccccc--CCCCCCCEEEEecCCH-
Confidence            689999999999999999854433678999876665543    4653   33344 34444  3443 78888754321 


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcc
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGE  396 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~  396 (418)
                          .-+..+|.+....++..-.|++ .|.....    .+...+...||..++-.+..
T Consensus        78 ----~lI~~ILe~~~~~~~~~~~lIL-qP~~~~~----~LR~~L~~~gf~I~~E~lv~  126 (205)
T PF04816_consen   78 ----ELIIEILEAGPEKLSSAKRLIL-QPNTHAY----ELRRWLYENGFEIIDEDLVE  126 (205)
T ss_dssp             ----HHHHHHHHHTGGGGTT--EEEE-EESS-HH----HHHHHHHHTTEEEEEEEEEE
T ss_pred             ----HHHHHHHHhhHHHhccCCeEEE-eCCCChH----HHHHHHHHCCCEEEEeEEEe
Confidence                2244778888888877667755 4544333    36777999999988755544

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.05  E-value=0.098  Score=47.85  Aligned_cols=71  Identities=13%  Similarity=0.178  Sum_probs=46.5

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      ..++|+|||.|-+.....-.+...+ .++|+++..++.....    .+ +.+...+...+-+..+.||.++.+-=|.
T Consensus        50 kkl~DLgcgcGmLs~a~sm~~~e~v-lGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG  125 (185)
T KOG3420|consen   50 KKLKDLGCGCGMLSIAFSMPKNESV-LGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG  125 (185)
T ss_pred             cchhhhcCchhhhHHHhhcCCCceE-EeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence            4799999999988755544443332 3578888888754332    11 2445555566666678999999875554

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.77  E-value=0.087  Score=54.22  Aligned_cols=104  Identities=13%  Similarity=0.129  Sum_probs=62.4

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEE-eccCCCHHhHHHHH--HcCCCceeec------ccCCCCCC-CCccceEEecC
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVIT-NTLNVDAPYSEFIA--ARGLFPLYLS------LDHRFPFY-DNVFDLVHASS  334 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~-~alD~s~~~l~~a~--eRGli~~~~~------~~e~LPf~-d~sFDlV~s~~  334 (418)
                      ...+||+|.|.|+-+.++.+.-.+.-+ ..++.++..-++..  ++++.+...+      ..+++|++ ...|++|+..+
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~  193 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD  193 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence            346999999999655444332111000 01455655444432  2333222221      23467775 56899999876


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      -|-+......+...+..+..++.|||.++|.+..
T Consensus       194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG  227 (484)
T COG5459         194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG  227 (484)
T ss_pred             hhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence            6655554444556888999999999999998763

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=93.69  E-value=0.11  Score=47.90  Aligned_cols=66  Identities=21%  Similarity=0.204  Sum_probs=39.3

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCC-C-CCCCc-cceEEec
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRF-P-FYDNV-FDLVHAS  333 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~L-P-f~d~s-FDlV~s~  333 (418)
                      ++|+|+-||.|+.+..++...-.|+  ++|+++..++.++.    -|+   +.+++++..++ + +..+. ||+|+++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Vi--aidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVI--AIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEE--EEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEE--EEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            3799999999999999999975554  47999888876654    353   34455533222 2 12222 8999974

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=93.64  E-value=0.15  Score=48.54  Aligned_cols=104  Identities=16%  Similarity=0.259  Sum_probs=47.9

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHh-hcCcE-EEEeccCCCHHhHHHHH-------H----cCC----CceeecccCCC
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMA-ERNVT-VITNTLNVDAPYSEFIA-------A----RGL----FPLYLSLDHRF  320 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La-~~gV~-vv~~alD~s~~~l~~a~-------e----RGl----i~~~~~~~e~L  320 (418)
                      +.+.++  ...+|+|||.|......+ ..++. ++|  +++.+...+.|.       +    .|.    +.+.+++...-
T Consensus        38 ~~l~~~--dvF~DlGSG~G~~v~~aal~~~~~~~~G--IEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~  113 (205)
T PF08123_consen   38 LNLTPD--DVFYDLGSGVGNVVFQAALQTGCKKSVG--IEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP  113 (205)
T ss_dssp             TT--TT---EEEEES-TTSHHHHHHHHHH--SEEEE--EE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred             hCCCCC--CEEEECCCCCCHHHHHHHHHcCCcEEEE--EEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence            345444  589999999998654444 33555 544  555543332221       1    122    11222332221


Q ss_pred             CCCC---CccceEEecCc-CcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          321 PFYD---NVFDLVHASSG-LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       321 Pf~d---~sFDlV~s~~~-L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                      ++.+   ..-|+|+++.. |.     +.+...|.++..-||||-+++-...++.
T Consensus       114 ~~~~~~~s~AdvVf~Nn~~F~-----~~l~~~L~~~~~~lk~G~~IIs~~~~~~  162 (205)
T PF08123_consen  114 DFVKDIWSDADVVFVNNTCFD-----PDLNLALAELLLELKPGARIISTKPFCP  162 (205)
T ss_dssp             HHHHHHGHC-SEEEE--TTT------HHHHHHHHHHHTTS-TT-EEEESS-SS-
T ss_pred             HhHhhhhcCCCEEEEeccccC-----HHHHHHHHHHHhcCCCCCEEEECCCcCC
Confidence            1111   23589999754 42     3455777889999999988765444443

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=93.54  E-value=0.29  Score=51.12  Aligned_cols=19  Identities=21%  Similarity=0.249  Sum_probs=17.4

Q ss_pred             CCCCccceEEecCcCcCCC
Q 037675          322 FYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       322 f~d~sFDlV~s~~~L~~~~  340 (418)
                      ||+++.+++|++.++||..
T Consensus       158 fP~~Slh~~~Ss~slHWLS  176 (386)
T PLN02668        158 FPARSIDVFHSAFSLHWLS  176 (386)
T ss_pred             cCCCceEEEEeeccceecc
Confidence            8999999999999999764

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.49  E-value=0.3  Score=51.72  Aligned_cols=110  Identities=19%  Similarity=0.247  Sum_probs=69.2

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHH----HHcCCCce--eecccCCCCCC---CCccceEEecCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFI----AARGLFPL--YLSLDHRFPFY---DNVFDLVHASSGL  336 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a----~eRGli~~--~~~~~e~LPf~---d~sFDlV~s~~~L  336 (418)
                      .++||+=||.|+|+..|+++.-.|+  ++++++..++.|    +..|+...  ..++++++.-.   ...+|.|+.    
T Consensus       295 ~~vlDlYCGvG~f~l~lA~~~~~V~--gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv----  368 (432)
T COG2265         295 ERVLDLYCGVGTFGLPLAKRVKKVH--GVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV----  368 (432)
T ss_pred             CEEEEeccCCChhhhhhcccCCEEE--EEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE----
Confidence            5899999999999999998876665  468888777654    34555432  23566666433   357899985    


Q ss_pred             cCCCChhHHH-HHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcE
Q 037675          337 DVGGQPEKLE-FLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYK  388 (418)
Q Consensus       337 ~~~~~~~~le-~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk  388 (418)
                      .  +++.++. .++..+. -++|-..++|+   |+...+...+ ..+...||+
T Consensus       369 D--PPR~G~~~~~lk~l~-~~~p~~IvYVS---CNP~TlaRDl-~~L~~~gy~  414 (432)
T COG2265         369 D--PPRAGADREVLKQLA-KLKPKRIVYVS---CNPATLARDL-AILASTGYE  414 (432)
T ss_pred             C--CCCCCCCHHHHHHHH-hcCCCcEEEEe---CCHHHHHHHH-HHHHhCCeE
Confidence            2  2233344 4444444 46777888776   4443333323 335556675

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=93.42  E-value=0.46  Score=44.85  Aligned_cols=101  Identities=17%  Similarity=0.210  Sum_probs=61.0

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----C---CCceeecccC-CCCCCCC--ccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----G---LFPLYLSLDH-RFPFYDN--VFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----G---li~~~~~~~e-~LPf~d~--sFDlV~s~~~  335 (418)
                      .++||+=+|+|.++..-++||..-+ +-+|.+....+.+++.    +   -...+..++. .++-...  .||+|+..==
T Consensus        45 ~~~LDlFAGSGaLGlEAlSRGA~~~-~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP  123 (187)
T COG0742          45 ARVLDLFAGSGALGLEALSRGAARV-VFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP  123 (187)
T ss_pred             CEEEEecCCccHhHHHHHhCCCceE-EEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC
Confidence            4899999999999999999985443 2368877666554432    2   2233444333 2222233  4999997532


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ++.-.-...+.....+-..+|+|+|.+++...
T Consensus       124 y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~  155 (187)
T COG0742         124 YAKGLLDKELALLLLEENGWLKPGALIVVEHD  155 (187)
T ss_pred             CccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence            22100011222333446789999999888755

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=93.30  E-value=0.44  Score=48.72  Aligned_cols=102  Identities=16%  Similarity=0.072  Sum_probs=62.5

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccC-----CC-CC-CCCccce
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDH-----RF-PF-YDNVFDL  329 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e-----~L-Pf-~d~sFDl  329 (418)
                      .+.+|  .+||.+|||. |..+..+++. |+..+ ++++.++.+.+.+++.+-...+.....     .+ .+ ..+.+|+
T Consensus       181 ~~~~g--~~VlV~g~G~vG~~~~~la~~~g~~~v-i~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~  257 (386)
T cd08283         181 EVKPG--DTVAVWGCGPVGLFAARSAKLLGAERV-IAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDV  257 (386)
T ss_pred             cCCCC--CEEEEECCCHHHHHHHHHHHHcCCCEE-EEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCE
Confidence            34455  4899999987 7787777765 66322 346888888998888732222211111     11 12 2346898


Q ss_pred             EEecCc---------------CcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          330 VHASSG---------------LDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       330 V~s~~~---------------L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      |+-.-.               |+...++   ...+.++.|.|+|+|.+++..
T Consensus       258 vld~vg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         258 CIDAVGMEAHGSPLHKAEQALLKLETDR---PDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             EEECCCCcccccccccccccccccccCc---hHHHHHHHHHhccCCEEEEEc
Confidence            877421               1111122   257889999999999997754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=92.93  E-value=0.35  Score=48.06  Aligned_cols=105  Identities=17%  Similarity=0.126  Sum_probs=55.0

Q ss_pred             CCCeEEEECCccCh--HHHHHhhc---CcEEEEeccCCCHHhHHHHHH--cCC----CceeecccCCC------CCCCCc
Q 037675          264 GIRIGFDIGGGSGT--FAARMAER---NVTVITNTLNVDAPYSEFIAA--RGL----FPLYLSLDHRF------PFYDNV  326 (418)
Q Consensus       264 ~~r~VLDvGCGtG~--faa~La~~---gV~vv~~alD~s~~~l~~a~e--RGl----i~~~~~~~e~L------Pf~d~s  326 (418)
                      .++..||+|||.=+  .....+++   ...||  -+|+++-.+..++.  .+-    ..++.++..+-      |--.+.
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVV--YVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~  145 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVV--YVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGL  145 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEE--EEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEE--EECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence            48999999999743  44445443   45554  26888766653322  221    22333432211      111123


Q ss_pred             cc-----eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          327 FD-----LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       327 FD-----lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                      +|     .|....+||+..+.++...++..+...|-||.+++|++....
T Consensus       146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d  194 (267)
T PF04672_consen  146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD  194 (267)
T ss_dssp             --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred             CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence            33     456678899988877788999999999999999999987543

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=92.92  E-value=0.068  Score=49.43  Aligned_cols=48  Identities=25%  Similarity=0.345  Sum_probs=37.6

Q ss_pred             CCCccceEEecCcCcCCC--------ChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          323 YDNVFDLVHASSGLDVGG--------QPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       323 ~d~sFDlV~s~~~L~~~~--------~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                      +.++||.+.|.++++|..        ++.+-...+.++.++|||||.+++..|...
T Consensus        60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~  115 (177)
T PF03269_consen   60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT  115 (177)
T ss_pred             hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence            578899999988886532        333445789999999999999999988553

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=92.91  E-value=0.6  Score=45.67  Aligned_cols=93  Identities=19%  Similarity=0.216  Sum_probs=60.2

Q ss_pred             cCCCCCCeEEEECCc-cChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC------CCCCCccceEE
Q 037675          260 LGSGGIRIGFDIGGG-SGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF------PFYDNVFDLVH  331 (418)
Q Consensus       260 l~~g~~r~VLDvGCG-tG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L------Pf~d~sFDlV~  331 (418)
                      +..+  .+||..|+| .|..+..+++. |+.++  +++.++...+.+++.|. .......+..      ....+.+|+|+
T Consensus       163 ~~~~--~~vli~g~g~vG~~~~~la~~~G~~V~--~~~~s~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~D~vi  237 (338)
T cd08254         163 VKPG--ETVLVIGLGGLGLNAVQIAKAMGAAVI--AVDIKEEKLELAKELGA-DEVLNSLDDSPKDKKAAGLGGGFDVIF  237 (338)
T ss_pred             CCCC--CEEEEECCcHHHHHHHHHHHHcCCEEE--EEcCCHHHHHHHHHhCC-CEEEcCCCcCHHHHHHHhcCCCceEEE
Confidence            4444  378888876 47777777764 77754  45778888888887776 3332211111      13456799887


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      .....         ...+.++.|.|+++|.++...
T Consensus       238 d~~g~---------~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         238 DFVGT---------QPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             ECCCC---------HHHHHHHHHHhhcCCEEEEEC
Confidence            53211         156779999999999997653

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK11524 putative methyltransferase; Provisional

Probab=92.81  E-value=0.33  Score=48.11  Aligned_cols=54  Identities=13%  Similarity=0.128  Sum_probs=34.5

Q ss_pred             eeecccCCC--CCCCCccceEEec--CcC--c------CCCC---hhHHHHHHHHhhccccCCcEEEEE
Q 037675          312 LYLSLDHRF--PFYDNVFDLVHAS--SGL--D------VGGQ---PEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       312 ~~~~~~e~L--Pf~d~sFDlV~s~--~~L--~------~~~~---~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      ++.+++..+  .+++++||+|++.  +-.  .      .+..   ..-++.++.++.|+|||||.+++.
T Consensus        11 i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524         11 IIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             EEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            344544442  3568899999995  211  0      1110   022457899999999999999875

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=92.79  E-value=1.1  Score=43.86  Aligned_cols=141  Identities=18%  Similarity=0.292  Sum_probs=83.3

Q ss_pred             eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC---CCCCccceEEec---CcCcC--
Q 037675          267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP---FYDNVFDLVHAS---SGLDV--  338 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP---f~d~sFDlV~s~---~~L~~--  338 (418)
                      +++|+=||.|++...|.+.|..++ .++|+++...+.-...-- ....++...+.   ++. .+|+++.+   .-|..  
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~-~a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag   78 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVV-WAVEIDPDACETYKANFP-EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAG   78 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEE-EEEESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTS
T ss_pred             cEEEEccCccHHHHHHHhcCcEEE-EEeecCHHHHHhhhhccc-ccccccccccccccccc-cceEEEeccCCceEeccc
Confidence            699999999999999999997776 578998876654333222 44445554443   444 59999885   22332  


Q ss_pred             ----CCChhH-HHHHHHHhhccccCCcEEEEEecc---c-CchhHHHHHHHHHHHcCcEEEEEEEcccCC---C-Cccce
Q 037675          339 ----GGQPEK-LEFLMFDFDRILRAGGLFWLDNFY---C-ANDEKKSALTRLIERFGYKKLKWVVGEKGE---T-GKSEV  405 (418)
Q Consensus       339 ----~~~~~~-le~~L~Ei~RVLRPGG~~ii~~~~---~-~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d---~-~~~e~  405 (418)
                          ..+..+ +-.-+.++.+.+||.- |++....   . ......+.+...++++||. +.|.+..-.+   + .|..+
T Consensus        79 ~~~~~~d~r~~L~~~~~~~v~~~~Pk~-~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~-v~~~vlna~~yGvPQ~R~R~  156 (335)
T PF00145_consen   79 KRKGFDDPRNSLFFEFLRIVKELKPKY-FLLENVPGLLSSKNGEVFKEILEELEELGYN-VQWRVLNAADYGVPQNRERV  156 (335)
T ss_dssp             THHCCCCHTTSHHHHHHHHHHHHS-SE-EEEEEEGGGGTGGGHHHHHHHHHHHHHTTEE-EEEEEEEGGGGTSSBE-EEE
T ss_pred             cccccccccchhhHHHHHHHhhccceE-EEecccceeecccccccccccccccccccee-ehhccccHhhCCCCCceeeE
Confidence                223322 3344555666678955 4455431   1 1123345677788999996 6677755444   2 35566


Q ss_pred             EEEEEEE
Q 037675          406 YLSAVLQ  412 (418)
Q Consensus       406 ~l~Ai~q  412 (418)
                      |+.++.+
T Consensus       157 fivg~r~  163 (335)
T PF00145_consen  157 FIVGIRK  163 (335)
T ss_dssp             EEEEEEG
T ss_pred             EEEEECC
Confidence            6666654

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=92.59  E-value=0.34  Score=46.61  Aligned_cols=30  Identities=20%  Similarity=0.263  Sum_probs=22.8

Q ss_pred             eEEEECCccChHHHHHhhcCcEEEEeccCC
Q 037675          267 IGFDIGGGSGTFAARMAERNVTVITNTLNV  296 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~  296 (418)
                      ...|||||.|++...|+.........++++
T Consensus        63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEI   92 (249)
T KOG3115|consen   63 EFADIGCGYGGLLMKLAPKFPDTLILGMEI   92 (249)
T ss_pred             eEEeeccCccchhhhccccCccceeeeehh
Confidence            689999999999999998854333245554

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=92.37  E-value=1.9  Score=39.68  Aligned_cols=119  Identities=12%  Similarity=0.135  Sum_probs=74.4

Q ss_pred             ECCccChHHHHHhhc---CcEEEEeccCCCHHhH----------HHHHHcCCCceeec-ccCCCC----CCCCccceEEe
Q 037675          271 IGGGSGTFAARMAER---NVTVITNTLNVDAPYS----------EFIAARGLFPLYLS-LDHRFP----FYDNVFDLVHA  332 (418)
Q Consensus       271 vGCGtG~faa~La~~---gV~vv~~alD~s~~~l----------~~a~eRGli~~~~~-~~e~LP----f~d~sFDlV~s  332 (418)
                      ||=|.=+|+..|++.   +..++.+..|..+...          +..++.|. .++++ ++..+.    ...+.||.|+-
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~-~V~~~VDat~l~~~~~~~~~~FDrIiF   81 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGV-TVLHGVDATKLHKHFRLKNQRFDRIIF   81 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCC-ccccCCCCCcccccccccCCcCCEEEE
Confidence            455555788888876   3455555577654333          23344565 55554 454443    45689999997


Q ss_pred             cCcCcC--C--------CChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          333 SSGLDV--G--------GQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       333 ~~~L~~--~--------~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      +.=...  .        ..+.-+..++.-..++|+++|.+.|+......-..++ ++.++++.|+..++
T Consensus        82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~-i~~lA~~~gl~l~~  149 (166)
T PF10354_consen   82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWN-IEELAAEAGLVLVR  149 (166)
T ss_pred             eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCcccc-HHHHHHhcCCEEEE
Confidence            531111  0        1123567888999999999999988866443323333 66888899997664

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=92.07  E-value=0.35  Score=46.18  Aligned_cols=96  Identities=19%  Similarity=0.217  Sum_probs=55.0

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHH----HHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEF----IAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ  341 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~----a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~  341 (418)
                      ++|||+|.|.|--+..-+..|..-+ .+.|+.+...+.    ++..|. .......+.+ ..+..||+|.++.++..-..
T Consensus        81 krVLd~gagsgLvaIAaa~aGA~~v-~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~-g~~~~~Dl~LagDlfy~~~~  157 (218)
T COG3897          81 KRVLDLGAGSGLVAIAAARAGAAEV-VAADIDPWLEQAIRLNAAANGV-SILFTHADLI-GSPPAFDLLLAGDLFYNHTE  157 (218)
T ss_pred             ceeeecccccChHHHHHHHhhhHHH-HhcCCChHHHHHhhcchhhccc-eeEEeecccc-CCCcceeEEEeeceecCchH
Confidence            5899999999987766666652211 123555544433    334454 2222222222 37889999999987754322


Q ss_pred             hhHHHHHHHHhhccccC-CcEEEEEecc
Q 037675          342 PEKLEFLMFDFDRILRA-GGLFWLDNFY  368 (418)
Q Consensus       342 ~~~le~~L~Ei~RVLRP-GG~~ii~~~~  368 (418)
                      .   .+++. +.+.|+- |-.+++-++.
T Consensus       158 a---~~l~~-~~~~l~~~g~~vlvgdp~  181 (218)
T COG3897         158 A---DRLIP-WKDRLAEAGAAVLVGDPG  181 (218)
T ss_pred             H---HHHHH-HHHHHHhCCCEEEEeCCC
Confidence            2   25555 5555555 4455555553

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=91.80  E-value=0.59  Score=46.56  Aligned_cols=125  Identities=15%  Similarity=0.284  Sum_probs=74.4

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHH----HHcCCCceee--cccCCC-C-CCCC
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFI----AARGLFPLYL--SLDHRF-P-FYDN  325 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a----~eRGli~~~~--~~~e~L-P-f~d~  325 (418)
                      .|...+|  ..|||+.++.|+=+.+|++. +  -.++  +.|++..-++..    ..-|+..+..  .+...+ + .+..
T Consensus        80 ~L~~~~~--~~VLD~CAapGgKt~~la~~~~~~g~i~--A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~  155 (283)
T PF01189_consen   80 ALDPQPG--ERVLDMCAAPGGKTTHLAELMGNKGEIV--ANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPES  155 (283)
T ss_dssp             HHTTTTT--SEEEESSCTTSHHHHHHHHHTTTTSEEE--EEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTT
T ss_pred             ccccccc--ccccccccCCCCceeeeeecccchhHHH--HhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccccc
Confidence            3444445  48999999999988888775 2  2332  469988655543    3345533222  222222 2 2344


Q ss_pred             ccceEEec------CcCcCCCC------hhH-------HHHHHHHhhccc----cCCcEEEEEecccCchhHHHHHHHHH
Q 037675          326 VFDLVHAS------SGLDVGGQ------PEK-------LEFLMFDFDRIL----RAGGLFWLDNFYCANDEKKSALTRLI  382 (418)
Q Consensus       326 sFDlV~s~------~~L~~~~~------~~~-------le~~L~Ei~RVL----RPGG~~ii~~~~~~~ee~~~~~~~l~  382 (418)
                      .||.|...      +++..-.+      +.+       -..+|....+.+    ||||+++.+.-.-..+|.++....++
T Consensus       156 ~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl  235 (283)
T PF01189_consen  156 KFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFL  235 (283)
T ss_dssp             TEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHH
T ss_pred             ccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHH
Confidence            69999872      22321110      011       135778889999    99999988765444556566677777


Q ss_pred             HHc
Q 037675          383 ERF  385 (418)
Q Consensus       383 ~~~  385 (418)
                      ++.
T Consensus       236 ~~~  238 (283)
T PF01189_consen  236 KRH  238 (283)
T ss_dssp             HHS
T ss_pred             HhC
Confidence            765

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=91.75  E-value=1.1  Score=47.23  Aligned_cols=122  Identities=15%  Similarity=0.163  Sum_probs=73.4

Q ss_pred             cCCCCCCeEEEECCccChHHHHHh----hcCcEEEEeccCCCHHhHH----HHHHcCCCceee--cccCCCC---CCCCc
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMA----ERNVTVITNTLNVDAPYSE----FIAARGLFPLYL--SLDHRFP---FYDNV  326 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La----~~gV~vv~~alD~s~~~l~----~a~eRGli~~~~--~~~e~LP---f~d~s  326 (418)
                      +.+-+..+|||+-+-.|+=+.+++    ..|+.   +|.|.+.+-+.    .+..-|+...+.  .+...+|   |+. +
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I---~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~  312 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVI---FANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-S  312 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCceE---EecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-c
Confidence            444444699999999986444443    33544   45788776554    344557655543  2444454   555 9


Q ss_pred             cceEEe----cC--cCc------CCCChh-------HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHc
Q 037675          327 FDLVHA----SS--GLD------VGGQPE-------KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERF  385 (418)
Q Consensus       327 FDlV~s----~~--~L~------~~~~~~-------~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~  385 (418)
                      ||-|..    ++  ++.      .+....       --+++|......+||||+++.+.-.-..+|.+..+..++++.
T Consensus       313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~  390 (460)
T KOG1122|consen  313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKR  390 (460)
T ss_pred             cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhC
Confidence            999984    44  332      111111       112567777788999999988866555566666666677764

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=91.66  E-value=0.058  Score=46.67  Aligned_cols=41  Identities=24%  Similarity=0.334  Sum_probs=30.1

Q ss_pred             ccceEEecCcCcC----CCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          326 VFDLVHASSGLDV----GGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       326 sFDlV~s~~~L~~----~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .||+|.|..+--|    +. .+++..++..+.+.|||||.|++.--
T Consensus         1 ~yDvilclSVtkWIHLn~G-D~Gl~~~f~~~~~~L~pGG~lilEpQ   45 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWG-DEGLKRFFRRIYSLLRPGGILILEPQ   45 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHH-HHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred             CccEEEEEEeeEEEEecCc-CHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence            3899999765332    33 35788999999999999999988643

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=90.53  E-value=1.5  Score=43.41  Aligned_cols=101  Identities=16%  Similarity=0.274  Sum_probs=66.1

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCH----HhHHHHHHc-CCCceeecccCCCC--CCCCccceEE
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDA----PYSEFIAAR-GLFPLYLSLDHRFP--FYDNVFDLVH  331 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~----~~l~~a~eR-Gli~~~~~~~e~LP--f~d~sFDlV~  331 (418)
                      +++|.  +||=+|++.|+.-.+..+- |...+..+++.+.    ..+..|.+| +++|.+.+..+.--  ..-.-.|+|+
T Consensus       154 ikpGs--KVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIF  231 (317)
T KOG1596|consen  154 IKPGS--KVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIF  231 (317)
T ss_pred             ecCCc--eEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEe
Confidence            57775  8999999999888777765 4333334555543    455677776 56777765322111  1123566666


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +     ...+++....+.....-.||+||-|+|+--
T Consensus       232 a-----Dvaqpdq~RivaLNA~~FLk~gGhfvisik  262 (317)
T KOG1596|consen  232 A-----DVAQPDQARIVALNAQYFLKNGGHFVISIK  262 (317)
T ss_pred             c-----cCCCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence            5     234445556778889999999999988754

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=90.52  E-value=1.5  Score=43.92  Aligned_cols=101  Identities=12%  Similarity=0.132  Sum_probs=50.7

Q ss_pred             CCeEEEECCccCh-HHHHHhhc-CcEEEEeccCCCHHhHHHHHH-----cCC---CceeecccCCCCCCCCccceEEecC
Q 037675          265 IRIGFDIGGGSGT-FAARMAER-NVTVITNTLNVDAPYSEFIAA-----RGL---FPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       265 ~r~VLDvGCGtG~-faa~La~~-gV~vv~~alD~s~~~l~~a~e-----RGl---i~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      .++|+=||+|.=- .+..|+++ +..+....+|.++..++.+++     .|+   +.+..++....+..-..||+|+...
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa  200 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA  200 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence            4589999999654 44556554 332221346888776665432     122   2334455555555557899999876


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ....-..  ..+++|..+.+.++||..++++..
T Consensus       201 lVg~~~e--~K~~Il~~l~~~m~~ga~l~~Rsa  231 (276)
T PF03059_consen  201 LVGMDAE--PKEEILEHLAKHMAPGARLVVRSA  231 (276)
T ss_dssp             T-S------SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred             hcccccc--hHHHHHHHHHhhCCCCcEEEEecc
Confidence            5543222  234999999999999999988854

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=90.44  E-value=6.1  Score=39.85  Aligned_cols=139  Identities=15%  Similarity=0.178  Sum_probs=77.7

Q ss_pred             EEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCC-CCccceEEecC---cCc------
Q 037675          268 GFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFY-DNVFDLVHASS---GLD------  337 (418)
Q Consensus       268 VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~-d~sFDlV~s~~---~L~------  337 (418)
                      |+|+=||.|++...|.+.|..++ .++|+++...+.-...---..+.++...+... -..+|+++.+-   -+.      
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~-~a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~~   79 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCV-FASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKRK   79 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEE-EEEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhcccC
Confidence            68999999999999988898776 56888876665433321112233444444311 12489998751   122      


Q ss_pred             CCCChhHHHHHHHHhhccc---cCCcEEEEEecc----cCchhHHHHHHHHHHHcCcEEEEEEEcccCC----CCccceE
Q 037675          338 VGGQPEKLEFLMFDFDRIL---RAGGLFWLDNFY----CANDEKKSALTRLIERFGYKKLKWVVGEKGE----TGKSEVY  406 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVL---RPGG~~ii~~~~----~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d----~~~~e~~  406 (418)
                      ...+..  ..++.++.|++   ||. +|++....    ......-+.+...++.+||. +.|.+..-.+    ..|...|
T Consensus        80 ~~~d~r--~~L~~~~~r~i~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~-v~~~~l~a~dyGvPQ~R~R~f  155 (315)
T TIGR00675        80 GFEDTR--GTLFFEIVRILKEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYK-VYYKVLNAKDFGVPQNRERIY  155 (315)
T ss_pred             CCCCch--hhHHHHHHHHHhhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCE-EEEEEEcHHHCCCCCCccEEE
Confidence            111222  13444555544   785 34454331    11122334567778899996 4565544333    2455666


Q ss_pred             EEEEE
Q 037675          407 LSAVL  411 (418)
Q Consensus       407 l~Ai~  411 (418)
                      +.++-
T Consensus       156 ~ia~r  160 (315)
T TIGR00675       156 IVGFR  160 (315)
T ss_pred             EEEEe
Confidence            66654

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=89.68  E-value=0.85  Score=46.84  Aligned_cols=95  Identities=19%  Similarity=0.179  Sum_probs=63.4

Q ss_pred             cCCCCCCeEEEECCc-cChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeecc-cCCCCCCCCccceEEecCcC
Q 037675          260 LGSGGIRIGFDIGGG-SGTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSL-DHRFPFYDNVFDLVHASSGL  336 (418)
Q Consensus       260 l~~g~~r~VLDvGCG-tG~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~-~e~LPf~d~sFDlV~s~~~L  336 (418)
                      +++|+  .|+=+|+| .|..|..+++ .|..|+  ++|.++.-.+.|++-|..-.+.+. .+.+.--.+.||+|+..-. 
T Consensus       164 ~~pG~--~V~I~G~GGlGh~avQ~Aka~ga~Vi--a~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-  238 (339)
T COG1064         164 VKPGK--WVAVVGAGGLGHMAVQYAKAMGAEVI--AITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-  238 (339)
T ss_pred             CCCCC--EEEEECCcHHHHHHHHHHHHcCCeEE--EEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-
Confidence            44554  77777776 4577888887 587764  579999999999998873333322 2222212234999987443 


Q ss_pred             cCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      .         ..+...-+.||+||++++....
T Consensus       239 ~---------~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         239 P---------ATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             h---------hhHHHHHHHHhcCCEEEEECCC
Confidence            1         4456888999999999887653

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=89.58  E-value=2.3  Score=43.49  Aligned_cols=85  Identities=19%  Similarity=0.101  Sum_probs=39.4

Q ss_pred             HHHHHc-cCCCCCCeEEEECCccChHHHHHhhc------------C------cEEEEeccCCC-HHhHH-----H--HHH
Q 037675          254 IDDVLA-LGSGGIRIGFDIGGGSGTFAARMAER------------N------VTVITNTLNVD-APYSE-----F--IAA  306 (418)
Q Consensus       254 I~~lL~-l~~g~~r~VLDvGCGtG~faa~La~~------------g------V~vv~~alD~s-~~~l~-----~--a~e  306 (418)
                      |.+++. ....+.-+|+|+||-.|..+..+.+.            +      +.+.-+.+..+ =+.+=     +  -..
T Consensus         5 i~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~   84 (334)
T PF03492_consen    5 IKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLK   84 (334)
T ss_dssp             HHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHH
T ss_pred             HHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccC
Confidence            444442 22333448999999999877444321            1      45543333332 23221     1  011


Q ss_pred             cCCCceee----ccc-CCCCCCCCccceEEecCcCcCCC
Q 037675          307 RGLFPLYL----SLD-HRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       307 RGli~~~~----~~~-e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      ... +.+.    +.. .+| ||++|.|++|++.++||..
T Consensus        85 ~~~-~~f~~gvpgSFy~rL-fP~~Svh~~~Ss~alHWLS  121 (334)
T PF03492_consen   85 KFR-NYFVSGVPGSFYGRL-FPSNSVHFGHSSYALHWLS  121 (334)
T ss_dssp             HTT-SEEEEEEES-TTS---S-TT-EEEEEEES-TTB-S
T ss_pred             CCc-eEEEEecCchhhhcc-CCCCceEEEEEechhhhcc
Confidence            111 2222    222 344 8999999999999999643

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=89.09  E-value=2.3  Score=44.43  Aligned_cols=126  Identities=17%  Similarity=0.183  Sum_probs=75.7

Q ss_pred             CCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHcC----C---------CceeecccCCC-CCCCCccce
Q 037675          265 IRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAARG----L---------FPLYLSLDHRF-PFYDNVFDL  329 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eRG----l---------i~~~~~~~e~L-Pf~d~sFDl  329 (418)
                      .|+||=+|.|.|--+..|.+.. +.-+ .-+|.++.|++++...-    +         +.++.+++..+ --..+.||.
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI-~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~  368 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQI-TLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV  368 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceE-EEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence            5899999999999999999885 4433 23799999999877321    1         12223332221 234568999


Q ss_pred             EEecCcCcCCCChh---HHHHHHHHhhccccCCcEEEEEe--cccCchhHHHHHHHHHHHcCcEEEEEE
Q 037675          330 VHASSGLDVGGQPE---KLEFLMFDFDRILRAGGLFWLDN--FYCANDEKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       330 V~s~~~L~~~~~~~---~le~~L~Ei~RVLRPGG~~ii~~--~~~~~ee~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      |+... ..+-.+.-   --..+..-..|-|+++|.+++..  ++...+-.+. +...++++||...-..
T Consensus       369 vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~-i~aTik~AG~~~~Pyh  435 (508)
T COG4262         369 VIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWR-IDATIKSAGYRVWPYH  435 (508)
T ss_pred             EEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeee-ehhHHHhCcceeeeeE
Confidence            98642 11100000   01245566778899999998853  3433333222 3455788898765433

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=88.36  E-value=3.5  Score=41.76  Aligned_cols=143  Identities=13%  Similarity=0.208  Sum_probs=83.6

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc-CCCceeecccCCCC---CCCCccceEEec---CcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR-GLFPLYLSLDHRFP---FYDNVFDLVHAS---SGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR-Gli~~~~~~~e~LP---f~d~sFDlV~s~---~~L~~  338 (418)
                      .+++|+=||.|++...|...|..++ .++|+++..++.-+.+ ........+...+.   +....+|+++.+   .-|..
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~-~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~   82 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIV-FANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSI   82 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEE-EEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhh
Confidence            4899999999999999998898877 5788888766543332 21123333332221   111179999885   22331


Q ss_pred             ------CC-ChhHHHHHHHHhhccccCCcEEEEEeccc---CchhHHHHHHHHHHHcCcEEEEEEEcccCC---C-Cccc
Q 037675          339 ------GG-QPEKLEFLMFDFDRILRAGGLFWLDNFYC---ANDEKKSALTRLIERFGYKKLKWVVGEKGE---T-GKSE  404 (418)
Q Consensus       339 ------~~-~~~~le~~L~Ei~RVLRPGG~~ii~~~~~---~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d---~-~~~e  404 (418)
                            .. .+..+-.-+.++-..++| -+|++.....   ......+.+...++.+||. +.|.+..-.|   + .|..
T Consensus        83 aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~-~~~~ilna~dyGvPQ~ReR  160 (328)
T COG0270          83 AGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG-VEFNILNAADYGVPQSRER  160 (328)
T ss_pred             cCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc-chHheeeHHhcCCCCCccE
Confidence                  11 222222445556666778 5566654311   1223456688889999998 6666644333   2 4555


Q ss_pred             eEEEEEE
Q 037675          405 VYLSAVL  411 (418)
Q Consensus       405 ~~l~Ai~  411 (418)
                      +|++++.
T Consensus       161 vfiig~~  167 (328)
T COG0270         161 VFIVGFR  167 (328)
T ss_pred             EEEEEec
Confidence            5665543

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=87.93  E-value=5.7  Score=39.16  Aligned_cols=99  Identities=19%  Similarity=0.180  Sum_probs=53.7

Q ss_pred             CCeEEEECCccChHHHHHhhc-CcEEEEeccCCC--HHhHHHHHHc--------CC-Cce-eecccCCCC--CCCCc-cc
Q 037675          265 IRIGFDIGGGSGTFAARMAER-NVTVITNTLNVD--APYSEFIAAR--------GL-FPL-YLSLDHRFP--FYDNV-FD  328 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s--~~~l~~a~eR--------Gl-i~~-~~~~~e~LP--f~d~s-FD  328 (418)
                      ..+||++|.|+|--+...+.. +..++..  |..  ...++...+.        |- +.+ ...|.++++  +.... ||
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~lt--D~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLT--DLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccC--CchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            458999999999666555553 3333311  332  2223322221        21 111 112443332  22223 99


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      +|+++.|+..-...+   .++.=+.-.|-.+|.+++....
T Consensus       165 lilasDvvy~~~~~e---~Lv~tla~ll~~~~~i~l~~~l  201 (248)
T KOG2793|consen  165 LILASDVVYEEESFE---GLVKTLAFLLAKDGTIFLAYPL  201 (248)
T ss_pred             EEEEeeeeecCCcch---hHHHHHHHHHhcCCeEEEEEec
Confidence            999999988766666   4455555567777766555443

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=87.38  E-value=3.2  Score=42.38  Aligned_cols=93  Identities=17%  Similarity=0.186  Sum_probs=62.4

Q ss_pred             eEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCC------CCC-CCCccceEEecCcCc
Q 037675          267 IGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHR------FPF-YDNVFDLVHASSGLD  337 (418)
Q Consensus       267 ~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~------LPf-~d~sFDlV~s~~~L~  337 (418)
                      +|+=+|||. |.++..+++. |...+ +++|.++.-++.|++.+-........+.      +.. ....+|+|+=...  
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~V-iv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G--  247 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVV-IVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG--  247 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceE-EEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence            899999998 7777777765 54333 3469999999999996543333322221      011 1246999885332  


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC  369 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~  369 (418)
                         .    ..++.+..+++||||.+.+...+.
T Consensus       248 ---~----~~~~~~ai~~~r~gG~v~~vGv~~  272 (350)
T COG1063         248 ---S----PPALDQALEALRPGGTVVVVGVYG  272 (350)
T ss_pred             ---C----HHHHHHHHHHhcCCCEEEEEeccC
Confidence               1    157889999999999998776643

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=87.22  E-value=3.5  Score=44.69  Aligned_cols=95  Identities=15%  Similarity=0.186  Sum_probs=59.7

Q ss_pred             CeEEEECCccCh-HHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccC----------CCC----------CC
Q 037675          266 RIGFDIGGGSGT-FAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDH----------RFP----------FY  323 (418)
Q Consensus       266 r~VLDvGCGtG~-faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e----------~LP----------f~  323 (418)
                      .+|+=+|||.-+ .+...++. |..+  .++|.+++.++.+++-|..-...+..+          .+.          +.
T Consensus       166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V--~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~  243 (509)
T PRK09424        166 AKVLVIGAGVAGLAAIGAAGSLGAIV--RAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFA  243 (509)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEE--EEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHH
Confidence            589999999854 44455544 7754  357999999999988775212121111          111          11


Q ss_pred             C--CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          324 D--NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       324 d--~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      +  +.+|+|+..........+.   .+..++.+.+||||.++..
T Consensus       244 ~~~~gaDVVIetag~pg~~aP~---lit~~~v~~mkpGgvIVdv  284 (509)
T PRK09424        244 EQAKEVDIIITTALIPGKPAPK---LITAEMVASMKPGSVIVDL  284 (509)
T ss_pred             hccCCCCEEEECCCCCcccCcc---hHHHHHHHhcCCCCEEEEE
Confidence            1  4699999865443222221   3358999999999987554

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=86.77  E-value=6.9  Score=40.70  Aligned_cols=126  Identities=16%  Similarity=0.110  Sum_probs=71.7

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhcCc------EEEEeccCCCH-HhHHHHHHcCCCcee-e--cccCCC--------
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAERNV------TVITNTLNVDA-PYSEFIAARGLFPLY-L--SLDHRF--------  320 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~gV------~vv~~alD~s~-~~l~~a~eRGli~~~-~--~~~e~L--------  320 (418)
                      .+.+|.  +||||-+-.|+=++.|.+...      .++.+.+|... +|+.....|-..+.+ +  .++..+        
T Consensus       152 ~v~p~~--~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~  229 (375)
T KOG2198|consen  152 GVKPGD--KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDG  229 (375)
T ss_pred             ccCCCC--eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccC
Confidence            456774  899999999998877776522      45555555543 566554454221211 1  111111        


Q ss_pred             -CCCCCccceEEec------CcCc-------C-CCChh------HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHH
Q 037675          321 -PFYDNVFDLVHAS------SGLD-------V-GGQPE------KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALT  379 (418)
Q Consensus       321 -Pf~d~sFDlV~s~------~~L~-------~-~~~~~------~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~  379 (418)
                       +.....||-|.|.      .++.       . |....      ---.+|..-.|.|||||.++.+.-.-..-+.+....
T Consensus       230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~  309 (375)
T KOG2198|consen  230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQ  309 (375)
T ss_pred             chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHH
Confidence             2344579999873      1222       1 11100      011467778899999999988865444444445556


Q ss_pred             HHHHHcC
Q 037675          380 RLIERFG  386 (418)
Q Consensus       380 ~l~~~~G  386 (418)
                      ++++..|
T Consensus       310 ~~L~~~~  316 (375)
T KOG2198|consen  310 EALQKVG  316 (375)
T ss_pred             HHHHHhc
Confidence            6666553

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=86.46  E-value=3  Score=41.70  Aligned_cols=92  Identities=17%  Similarity=0.152  Sum_probs=55.9

Q ss_pred             CeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeec---ccCCCCCCCCccceEEecCcCcCCC
Q 037675          266 RIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLS---LDHRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       266 r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~---~~e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      .+||=+|||. |.++..+++. |...+ +++|.++..++.+++.|...++..   +..++.-..+.||+|+-..     .
T Consensus       171 ~~VlV~G~G~vG~~aiqlak~~G~~~V-i~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~-----G  244 (343)
T PRK09880        171 KRVFVSGVGPIGCLIVAAVKTLGAAEI-VCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS-----G  244 (343)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEE-EEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC-----C
Confidence            4788888764 5566666654 76322 246788888899988886332221   1111111123488887532     1


Q ss_pred             ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          341 QPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .+    ..+.+..+.|||||.+++...
T Consensus       245 ~~----~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        245 HP----SSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             CH----HHHHHHHHHhhcCCEEEEEcc
Confidence            11    456688889999999977654

>PRK10742 putative methyltransferase; Provisional

Probab=84.83  E-value=4.1  Score=40.19  Aligned_cols=85  Identities=14%  Similarity=0.016  Sum_probs=53.1

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhH---HHHHHc-------CC-----Cceeeccc
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYS---EFIAAR-------GL-----FPLYLSLD  317 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l---~~a~eR-------Gl-----i~~~~~~~  317 (418)
                      .|.+.+.++.|..-+|||.=+|+|..+..++.+|..|+  .++-++...   +...++       +.     +.+++++.
T Consensus        77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~--~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da  154 (250)
T PRK10742         77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVR--MLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_pred             HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEE--EEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence            44555678877655899999999999999999998754  467776433   322222       11     12333322


Q ss_pred             C-CCCCCCCccceEEecCcCcCC
Q 037675          318 H-RFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       318 e-~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      . -|.-...+||+|+..=.+.+-
T Consensus       155 ~~~L~~~~~~fDVVYlDPMfp~~  177 (250)
T PRK10742        155 LTALTDITPRPQVVYLDPMFPHK  177 (250)
T ss_pred             HHHHhhCCCCCcEEEECCCCCCC
Confidence            1 122223479999986656553

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=84.02  E-value=2  Score=39.49  Aligned_cols=48  Identities=17%  Similarity=0.132  Sum_probs=28.8

Q ss_pred             HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcC-cEEEEEE
Q 037675          344 KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFG-YKKLKWV  393 (418)
Q Consensus       344 ~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~G-fk~l~W~  393 (418)
                      .+...+.|+.|+|||||.+++.........  .....+.+.+| |....+.
T Consensus        34 ~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~--~~~~~~~~~~g~~~~~~~i   82 (231)
T PF01555_consen   34 WMEEWLKECYRVLKPGGSIFIFIDDREIAG--FLFELALEIFGGFFLRNEI   82 (231)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEE-CCEECT--HHHHHHHHHHTT-EEEEEE
T ss_pred             HHHHHHHHHHhhcCCCeeEEEEecchhhhH--HHHHHHHHHhhhhheeccc
Confidence            356889999999999999877533221111  12444556666 7655433

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=83.80  E-value=5.9  Score=38.82  Aligned_cols=95  Identities=15%  Similarity=0.129  Sum_probs=56.7

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccC-C----CCCCCCccceEE
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDH-R----FPFYDNVFDLVH  331 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e-~----LPf~d~sFDlV~  331 (418)
                      .+.+|  .+||-+|+|. |..+..+++. |+..+ +.++.++...+.+.+.|.. ....... .    .....+.+|+|+
T Consensus       156 ~~~~g--~~vlI~g~g~vg~~~~~la~~~G~~~v-~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~vd~v~  231 (334)
T cd08234         156 GIKPG--DSVLVFGAGPIGLLLAQLLKLNGASRV-TVAEPNEEKLELAKKLGAT-ETVDPSREDPEAQKEDNPYGFDVVI  231 (334)
T ss_pred             CCCCC--CEEEEECCCHHHHHHHHHHHHcCCcEE-EEECCCHHHHHHHHHhCCe-EEecCCCCCHHHHHHhcCCCCcEEE
Confidence            45555  4788888652 5555555554 66522 2346677777777777762 2222111 1    012346799998


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      ....     . .   ..+.++.+.|+++|.++..+
T Consensus       232 ~~~~-----~-~---~~~~~~~~~l~~~G~~v~~g  257 (334)
T cd08234         232 EATG-----V-P---KTLEQAIEYARRGGTVLVFG  257 (334)
T ss_pred             ECCC-----C-h---HHHHHHHHHHhcCCEEEEEe
Confidence            6311     1 1   56778999999999997654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=83.58  E-value=7.2  Score=35.25  Aligned_cols=118  Identities=16%  Similarity=0.193  Sum_probs=61.4

Q ss_pred             eccCCCHHhHHHHHHc----CC---CceeecccCCCCC-CC-CccceEEecCcCcC------CCChhHHHHHHHHhhccc
Q 037675          292 NTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPF-YD-NVFDLVHASSGLDV------GGQPEKLEFLMFDFDRIL  356 (418)
Q Consensus       292 ~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf-~d-~sFDlV~s~~~L~~------~~~~~~le~~L~Ei~RVL  356 (418)
                      .+.|+-+..++..++|    ++   +.++++.-+++.- -+ +.+|+|+-+.-.-+      ...++.--.++....+.|
T Consensus         3 yaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL   82 (140)
T PF06962_consen    3 YAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELL   82 (140)
T ss_dssp             EEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHE
T ss_pred             EEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhh
Confidence            3578888777655543    43   3445555555543 23 48999988633222      223444557899999999


Q ss_pred             cCCcEEEEEecccCc--hhHHHHHHHHH---HHcCcEEEEEEEcccCCCCccceEEEEEEEc
Q 037675          357 RAGGLFWLDNFYCAN--DEKKSALTRLI---ERFGYKKLKWVVGEKGETGKSEVYLSAVLQK  413 (418)
Q Consensus       357 RPGG~~ii~~~~~~~--ee~~~~~~~l~---~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qK  413 (418)
                      +|||.+.|..+..+.  .+..+.+...+   ..-.|..+++....+.+    ...+..+.||
T Consensus        83 ~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~~----~pp~l~~ieK  140 (140)
T PF06962_consen   83 KPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQKN----NPPLLVIIEK  140 (140)
T ss_dssp             EEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-SS-------EEEEEEE
T ss_pred             ccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCCC----CCCEEEEEEC
Confidence            999999777664443  12222233333   34467777777665543    3333444555

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=81.73  E-value=8.5  Score=38.69  Aligned_cols=95  Identities=19%  Similarity=0.056  Sum_probs=57.2

Q ss_pred             cCCCCCCeEEEECCcc-ChHHHHHhhc-CcE-EEEeccCCCHHhHHHHHHcCCCceeecccCCC------CCCCCccceE
Q 037675          260 LGSGGIRIGFDIGGGS-GTFAARMAER-NVT-VITNTLNVDAPYSEFIAARGLFPLYLSLDHRF------PFYDNVFDLV  330 (418)
Q Consensus       260 l~~g~~r~VLDvGCGt-G~faa~La~~-gV~-vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L------Pf~d~sFDlV  330 (418)
                      +.+|  .+||=.|+|. |..+..+++. |+. ++  ++|.++...+++++.|...++....+.+      -...+.+|+|
T Consensus       174 ~~~g--~~VlV~G~g~vG~~a~~~ak~~G~~~Vi--~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~v  249 (358)
T TIGR03451       174 VKRG--DSVAVIGCGGVGDAAIAGAALAGASKII--AVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVV  249 (358)
T ss_pred             CCCC--CEEEEECCCHHHHHHHHHHHHcCCCeEE--EEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEE
Confidence            4455  4788888754 5566666664 764 43  4678888888888877622222111110      0123458988


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +-..     ...    ..+.+..+.||+||.+++...
T Consensus       250 id~~-----g~~----~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       250 IDAV-----GRP----ETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             EECC-----CCH----HHHHHHHHHhccCCEEEEECC
Confidence            7422     111    456677889999999977654

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=81.49  E-value=9.6  Score=39.87  Aligned_cols=100  Identities=17%  Similarity=0.111  Sum_probs=62.6

Q ss_pred             CeEEEECCccChHHHHHhhcC--cE--------------------------------------EEEeccCCCHHhHHHHH
Q 037675          266 RIGFDIGGGSGTFAARMAERN--VT--------------------------------------VITNTLNVDAPYSEFIA  305 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g--V~--------------------------------------vv~~alD~s~~~l~~a~  305 (418)
                      +..+|==||+|+++...+-.+  +-                                      .+ .++|+++.+++.|+
T Consensus       193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~-~G~Did~r~i~~Ak  271 (381)
T COG0116         193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII-YGSDIDPRHIEGAK  271 (381)
T ss_pred             CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE-EEecCCHHHHHHHH
Confidence            589999999999985444332  11                                      12 35899999998765


Q ss_pred             H----cCC---CceeecccCCCCCCCCccceEEec--CcCcCCCChhHHHHHHHH----hhccccCCcEEEEEec
Q 037675          306 A----RGL---FPLYLSLDHRFPFYDNVFDLVHAS--SGLDVGGQPEKLEFLMFD----FDRILRAGGLFWLDNF  367 (418)
Q Consensus       306 e----RGl---i~~~~~~~e~LPf~d~sFDlV~s~--~~L~~~~~~~~le~~L~E----i~RVLRPGG~~ii~~~  367 (418)
                      .    -|+   +.+..++...++-+-+.+|+|+|+  +-.- ......++.+..+    +.|.++-.+.++++..
T Consensus       272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~  345 (381)
T COG0116         272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS  345 (381)
T ss_pred             HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            4    354   445567888876544899999997  2222 2222334444444    4455566667766543

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=81.42  E-value=3.3  Score=35.01  Aligned_cols=85  Identities=20%  Similarity=0.193  Sum_probs=57.5

Q ss_pred             ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccC----CC--CCCCCccceEEecCcCcCCCChhHHH
Q 037675          274 GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDH----RF--PFYDNVFDLVHASSGLDVGGQPEKLE  346 (418)
Q Consensus       274 GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e----~L--Pf~d~sFDlV~s~~~L~~~~~~~~le  346 (418)
                      |.|.++..+++. |..++  ++|.++.-.+.+++-|....+.....    .+  -+..+.+|+|+-.-.     .    .
T Consensus         1 ~vG~~a~q~ak~~G~~vi--~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~----~   69 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVI--ATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----S----G   69 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEE--EEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----S----H
T ss_pred             ChHHHHHHHHHHcCCEEE--EEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-----c----H
Confidence            568888888875 76654  46888888999999885333322111    11  134468999985321     1    1


Q ss_pred             HHHHHhhccccCCcEEEEEeccc
Q 037675          347 FLMFDFDRILRAGGLFWLDNFYC  369 (418)
Q Consensus       347 ~~L~Ei~RVLRPGG~~ii~~~~~  369 (418)
                      ..+.+...+|||||.+++.....
T Consensus        70 ~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   70 DTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             HHHHHHHHHEEEEEEEEEESSTS
T ss_pred             HHHHHHHHHhccCCEEEEEEccC
Confidence            67889999999999998877654

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=80.95  E-value=6.3  Score=38.96  Aligned_cols=85  Identities=18%  Similarity=0.251  Sum_probs=51.9

Q ss_pred             CeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChh
Q 037675          266 RIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPE  343 (418)
Q Consensus       266 r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~  343 (418)
                      .+||=+|||. |.++..+++. |..++ .++|..+..++.+.+.+.+.   . .+.   ..+.||+|+-..     ... 
T Consensus       146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v-~~~~~~~~rl~~a~~~~~i~---~-~~~---~~~g~Dvvid~~-----G~~-  211 (308)
T TIGR01202       146 LPDLIVGHGTLGRLLARLTKAAGGSPP-AVWETNPRRRDGATGYEVLD---P-EKD---PRRDYRAIYDAS-----GDP-  211 (308)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceE-EEeCCCHHHHHhhhhccccC---h-hhc---cCCCCCEEEECC-----CCH-
Confidence            3677778764 7777777764 76644 23577776666665433211   1 111   234589887532     111 


Q ss_pred             HHHHHHHHhhccccCCcEEEEEec
Q 037675          344 KLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       344 ~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                         ..+.+..+.|||||.+++...
T Consensus       212 ---~~~~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       212 ---SLIDTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             ---HHHHHHHHhhhcCcEEEEEee
Confidence               456788889999999987554

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=80.48  E-value=4.8  Score=43.08  Aligned_cols=102  Identities=18%  Similarity=0.144  Sum_probs=64.1

Q ss_pred             CCeEEEECCccC--hHHHHHhhcC-cEEEEeccCCCHHhHHHHHH--cC--CC--ceeec---ccCCCCCCCC-ccceEE
Q 037675          265 IRIGFDIGGGSG--TFAARMAERN-VTVITNTLNVDAPYSEFIAA--RG--LF--PLYLS---LDHRFPFYDN-VFDLVH  331 (418)
Q Consensus       265 ~r~VLDvGCGtG--~faa~La~~g-V~vv~~alD~s~~~l~~a~e--RG--li--~~~~~---~~e~LPf~d~-sFDlV~  331 (418)
                      .+.++|+|-|.|  .+++.+..+. ...+ .-+|.+.+|..++..  |+  -+  +....   .-+.+|-... .||+|+
T Consensus       201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~-~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi  279 (491)
T KOG2539|consen  201 PDLLRDFGSGAGNGGWAAVLLWRQTKREY-SLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI  279 (491)
T ss_pred             hHHHHHHHhhcccchhhhhhhccccccee-EeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence            457888887765  5666666554 3322 126999888876543  33  11  11111   2346676554 499999


Q ss_pred             ecCcCcCCCChhHHHHHHHHh-hccccCCcEEEEEec
Q 037675          332 ASSGLDVGGQPEKLEFLMFDF-DRILRAGGLFWLDNF  367 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei-~RVLRPGG~~ii~~~  367 (418)
                      +++.+++......-.++..+. .+..|+||++++...
T Consensus       280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~  316 (491)
T KOG2539|consen  280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK  316 (491)
T ss_pred             eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence            999999877655444445554 456889999887665

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=80.30  E-value=8.1  Score=39.15  Aligned_cols=86  Identities=19%  Similarity=0.196  Sum_probs=38.8

Q ss_pred             cHHHHHHHHccCCCC---CCeEEEECCccChHHHHHh--hcCcEEEEeccCCCHHhHHHHHH----c-CC---Cceeec-
Q 037675          250 NDFLIDDVLALGSGG---IRIGFDIGGGSGTFAARMA--ERNVTVITNTLNVDAPYSEFIAA----R-GL---FPLYLS-  315 (418)
Q Consensus       250 y~~~I~~lL~l~~g~---~r~VLDvGCGtG~faa~La--~~gV~vv~~alD~s~~~l~~a~e----R-Gl---i~~~~~-  315 (418)
                      |-..|.++|......   .-++||||+|.-..=..|.  ..|...+  |.|+++..++.|++    . ++   |.+... 
T Consensus        85 Yi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fv--aTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~  162 (299)
T PF05971_consen   85 YIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFV--ATDIDPKSLESARENVERNPNLESRIELRKQK  162 (299)
T ss_dssp             HHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEE--EEES-HHHHHHHHHHHHHT-T-TTTEEEEE--
T ss_pred             HHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEE--EecCCHHHHHHHHHHHHhccccccceEEEEcC
Confidence            555678887643221   3479999999874322222  2365554  46888777766543    2 33   233321 


Q ss_pred             ----ccCCCCCCCCccceEEecCcCc
Q 037675          316 ----LDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       316 ----~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                          ....+--+++.||+..|+==|+
T Consensus       163 ~~~~i~~~i~~~~e~~dftmCNPPFy  188 (299)
T PF05971_consen  163 NPDNIFDGIIQPNERFDFTMCNPPFY  188 (299)
T ss_dssp             ST-SSTTTSTT--S-EEEEEE-----
T ss_pred             CccccchhhhcccceeeEEecCCccc
Confidence                1122223456899999975454

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=80.08  E-value=11  Score=37.55  Aligned_cols=92  Identities=17%  Similarity=0.026  Sum_probs=56.2

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcC
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGL  336 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L  336 (418)
                      .+.+|  .+||=.|+|. |.++..+++. |+.++  +++.++.-.+.+++.|... ..... .  ...+.+|.++-....
T Consensus       162 ~~~~g--~~VlV~G~g~iG~~a~~~a~~~G~~vi--~~~~~~~~~~~a~~~Ga~~-vi~~~-~--~~~~~~d~~i~~~~~  233 (329)
T TIGR02822       162 SLPPG--GRLGLYGFGGSAHLTAQVALAQGATVH--VMTRGAAARRLALALGAAS-AGGAY-D--TPPEPLDAAILFAPA  233 (329)
T ss_pred             CCCCC--CEEEEEcCCHHHHHHHHHHHHCCCeEE--EEeCChHHHHHHHHhCCce-ecccc-c--cCcccceEEEECCCc
Confidence            34555  4888888753 5555666654 77654  3566777788888888622 22211 1  112357876532211


Q ss_pred             cCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                            .   ..+.+..++|||||++++...
T Consensus       234 ------~---~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       234 ------G---GLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             ------H---HHHHHHHHhhCCCcEEEEEec
Confidence                  1   457788899999999977654

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	418
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	2e-06
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	1e-05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	1e-05
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	2e-05
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	2e-05
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	7e-05
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	1e-04
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	1e-04
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-04
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	2e-04
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	2e-04
3f4k_A	257	Putative methyltransferase; structural genomics, P	3e-04
3i9f_A	170	Putative type 11 methyltransferase; structural gen	4e-04
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	4e-04
1xxl_A	239	YCGJ protein; structural genomics, protein structu	5e-04
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	5e-04
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 7e-09
 Identities = 75/421 (17%), Positives = 135/421 (32%), Gaps = 135/421 (32%)

Query: 50  DGQIH--SLIHNHKNISLISEHVSLILKEIDSSQKKLAKMEKELLGYQSIDLSRPNIASE 107
           D +I   +L + +   +++ E +  +L +ID +    +          +I L   +I +E
Sbjct: 181 DFKIFWLNLKNCNSPETVL-EMLQKLLYQIDPNWTSRSD------HSSNIKLRIHSIQAE 233

Query: 108 LKLFLQHHQLPLG-------KDSRTGITEMVASVGHSC-------EKS-ADLLTQYMTYK 152
           L+  L+              ++++        +   SC        K   D L+   T  
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKA-----WNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 153 LS------GPCPDDWSLAQKLILR--GCEP--LPRRRCFAKSVPKVGLQSFPVSL-WKPV 201
           +S         PD+    + L+L+   C P  LPR      + P        +S+  + +
Sbjct: 289 ISLDHHSMTLTPDE---VKSLLLKYLDCRPQDLPREVL--TTNP------RRLSIIAESI 337

Query: 202 SDKIVTWSGLGCKNLSCLISKKLSRECVGCFDLDNPNENQRYIKARGKNDFLI--DDVLA 259
            D + TW     K+++C    KL+       ++  P E ++           +       
Sbjct: 338 RDGLATWDNW--KHVNC---DKLTTIIESSLNVLEPAEYRKMFD-----RLSVFPPSA-- 385

Query: 260 LGSGGIRIGFDIGGGSGTFA---ARMAERNVTVITNTLN----VDAPYSEFIAARGLFPL 312
                      I   +   +     + + +V V+ N L+    V+    E      +  +
Sbjct: 386 ----------HI--PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST--ISIPSI 431

Query: 313 YLSLD---------HR------------------FPFYDNVFDLVHASSGLDVGGQPEKL 345
           YL L          HR                   P+ D  F   H    L     PE++
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNIEHPERM 490

Query: 346 E-----FLMFDF-DRILRAGGLFW------LD-----NFY----CANDEKKSALTRLIER 384
                 FL F F ++ +R     W      L+      FY    C ND K   L   I  
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550

Query: 385 F 385
           F
Sbjct: 551 F 551

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 24/160 (15%)

Query: 239 ENQRYIKARGKNDFLIDDVL-ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVD 297
           +  R + A G + +    ++ A+   G +I  D G G G     ++++   V+      D
Sbjct: 21  QRWRNLAAAGNDIYGEARLIDAMAPRGAKI-LDAGCGQGRIGGYLSKQGHDVL----GTD 75

Query: 298 APYSE-FIA-ARGLFPLYLSLDHRF--------PFYDNVFDLVHASSGLDVGGQPEKLEF 347
                  I  A+  FP     + R+           +  FDL+ ++  +      +  E 
Sbjct: 76  L--DPILIDYAKQDFP-----EARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREP 128

Query: 348 LMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGY 387
            + +  R L A G   +  F             + ER G 
Sbjct: 129 ALANIHRALGADGRAVIG-FGAGRGWVFGDFLEVAERVGL 167

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 27/129 (20%)

Query: 270 DIGGGSGTFAARMAERNVTVI---TNTLNV---DAPYSEFIAARGLFPLYLSLDHRFPFY 323
           ++G G+G +  R+       +      L V    AP + ++ A G            PF 
Sbjct: 42  EVGAGTGYWLRRLPYPQKVGVEPSEAMLAVGRRRAPEATWVRAWG---------EALPFP 92

Query: 324 DNVFDLVHASSGLDVGGQPEKL--EFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRL 381
              FD+V   + L+     E++  E       R+LR GG   +        E  S    L
Sbjct: 93  GESFDVVLLFTTLEFVEDVERVLLEAR-----RVLRPGGALVVGVL-----EALSPWAAL 142

Query: 382 IERFGYKKL 390
             R G K +
Sbjct: 143 YRRLGEKGV 151

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 31/168 (18%)

Query: 232 FDLDNP--NENQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAER--NV 287
           +D      N+N + +   G    +I            +  D+G G G    +++      
Sbjct: 20  WDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEV-LDVGCGDGYGTYKLSRTGYKA 78

Query: 288 TVITNTL--------NVDAPYSEFIAARGLFPLYLSLD-HRFPFYDNVFDLVHASSGLDV 338
             +  +           + P   FI            D    PF +  F+ + A + L+ 
Sbjct: 79  VGVDISEVMIQKGKERGEGPDLSFIKG----------DLSSLPFENEQFEAIMAINSLEW 128

Query: 339 GGQPEKL--EFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIER 384
             +P +   E       R+L++ G   +         ++++  RL  +
Sbjct: 129 TEEPLRALNEIK-----RVLKSDGYACIAILGPTAKPRENSYPRLYGK 171

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 14/148 (9%)

Query: 247 RGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVD----APYSE 302
           R + + L   ++       ++  D+  G G F+  + +    V+   ++ D    A   E
Sbjct: 22  RSRIETLEPLLMKYMKKRGKV-LDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKA--RE 78

Query: 303 FIAARGLFPLYLSLD-HRFPFYDNVFDLVHASSGLDVGGQPEKLEFL--MFDFDRILRAG 359
           +  +R     ++  D  +  F D  FD V     +      E  +    +    R+L+  
Sbjct: 79  YAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVR---RVLKPS 135

Query: 360 GLFWLDNFYCANDEKKSALTRLIERFGY 387
           G F +  F    +        L+    Y
Sbjct: 136 GKFIMY-FTDLRELLPRLKESLVVGQKY 162

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 36/191 (18%), Positives = 61/191 (31%), Gaps = 27/191 (14%)

Query: 241 QRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPY 300
             Y + + ++  L   +  L +G  +I  ++G G+G  A  M      V       D   
Sbjct: 22  TAYAERQPRSATLTKFLGELPAGA-KI-LELGCGAGYQAEAMLAAGFDVD----ATDG-- 73

Query: 301 S-EFIA-ARGLFPL-YLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILR 357
           S E  A A         ++        + +D V A + L    + E  + L     R L+
Sbjct: 74  SPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDELADVLK-LIWRALK 132

Query: 358 AGGLFWLDNFYCANDEK------------KSALTRLIERFGYKKLK--WVVGEKGETGKS 403
            GGLF+   +     E             +  L       G            KG   + 
Sbjct: 133 PGGLFYAS-YKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQEL 191

Query: 404 EVYLSAVLQKP 414
             +L   ++KP
Sbjct: 192 AQFLHVSVRKP 202

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 19/143 (13%)

Query: 270 DIGGGSGTFAARMAERNVTVITNTLNVDAPYSEF---IAARGLFPLYLSLD-HRFPFYDN 325
           D+GGG+G ++  + ER   V+     VD   S+    +A        +       PF   
Sbjct: 60  DLGGGTGKWSLFLQERGFEVVL----VD--PSKEMLEVAREKGVKNVVEAKAEDLPFPSG 113

Query: 326 VFDLVHA-SSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIER 384
            F+ V A    L      +K    +    R+L   GL          D   + L ++IE+
Sbjct: 114 AFEAVLALGDVLSYVENKDKAFSEIR---RVLVPDGL-----LIATVDNFYTFLQQMIEK 165

Query: 385 FGYKKLKWVVGEKGETGKSEVYL 407
             + ++   +  +  +  + ++ 
Sbjct: 166 DAWDQITRFLKTQTTSVGTTLFS 188

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 17/127 (13%)

Query: 270 DIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAARGLFPL-------YLSLDHR 319
           D+G G G  A  +  +   ++  +      +    E+    GL          +L +   
Sbjct: 88  DLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI--- 144

Query: 320 FPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALT 379
            P  DN +D + +    D          +  +  R+L+  G+  + +    +   KS++ 
Sbjct: 145 -PCEDNSYDFIWS---QDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQ 200

Query: 380 RLIERFG 386
            +++R  
Sbjct: 201 PILDRIK 207

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 25/165 (15%), Positives = 57/165 (34%), Gaps = 17/165 (10%)

Query: 232 FDLDNPNENQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVIT 291
           +D     E+ +Y +     + +++DV+    G +    + G G+G    ++     TV  
Sbjct: 16  YDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNV---LEFGVGTGNLTNKLLLAGRTVYG 72

Query: 292 NTLNVDAPYSE-FIA-ARGLFPLYLSLDH----RFPFYDNVFDLVHASSGLDVGGQPEKL 345
               ++   S      A+   P   S+       F       D + ++         EK 
Sbjct: 73  ----IEP--SREMRMIAKEKLPKEFSITEGDFLSFEV-PTSIDTIVSTYAFHHLTDDEKN 125

Query: 346 EFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL 390
             +   + ++L  GG     +   A+ +         ++ G+ +L
Sbjct: 126 VAIA-KYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQL 169

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 28/188 (14%)

Query: 241 QRYIKARGKNDFLIDDVL-ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAP 299
           ++Y + R  +  +++ ++  L      +  DIG G+G ++  +A + + V      V+ P
Sbjct: 10  KQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYA----VE-P 64

Query: 300 YSEFIAARGLFPLYLSLDHRF--------PFYDNVFDLVHASSGLDVGGQPEKL--EFLM 349
                    + P        +           D   D V +   +      EK   E   
Sbjct: 65  SIVMRQQAVVHP-----QVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQ- 118

Query: 350 FDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSA 409
               RI+R G +  L   +     ++  L           L+++  ++      E     
Sbjct: 119 ----RIIRDGTIVLLT--FDIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRR 172

Query: 410 VLQKPVRV 417
           V   P  +
Sbjct: 173 VEAIPFLL 180

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 14/123 (11%)

Query: 256 DVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYS-EFIA-ARGLFP-- 311
           +  A G  G  I  D+G G+G +   +A     +      ++   +   +  AR   P  
Sbjct: 35  EPWATGVDG-VI-LDVGSGTGRWTGHLASLGHQIE----GLEP--ATRLVELARQTHPSV 86

Query: 312 -LYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA 370
             +             +  + A   L   G  E  + L+      +  GG   +  F   
Sbjct: 87  TFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALV-ALRMAVEDGGGLLMSFFSGP 145

Query: 371 NDE 373
           + E
Sbjct: 146 SLE 148

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 10/121 (8%)

Query: 270 DIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAARGLFPLYLSLD-HRFPFYDN 325
           D G G       +          I  +         F             D  + PF D 
Sbjct: 29  DCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDE 88

Query: 326 VFDLVHASSGLDVGGQPEKLEFL--MFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIE 383
               V++   +    + +  E +  +    R+L+ GGL  + NF    DE+ +   ++ E
Sbjct: 89  SMSFVYSYGTIFHMRKNDVKEAIDEIK---RVLKPGGLACI-NFLTTKDERYNKGEKIGE 144

Query: 384 R 384
            
Sbjct: 145 G 145

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 10/99 (10%)

Query: 270 DIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAARGLFPL--YLSLD-HRFPFY 323
           DIG G+G     +A+     +T I    +    ++E             ++      PF 
Sbjct: 52  DIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ 111

Query: 324 DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLF 362
           +   DL+ +   +   G    +     ++ + L+ GG  
Sbjct: 112 NEELDLIWSEGAIYNIGFERGMN----EWSKYLKKGGFI 146

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 270 DIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIA-ARGLFPLYLSLDHRFPFYDNVFD 328
           D G G+G +   + E    +      +D      +   +  F   ++L       DN  D
Sbjct: 23  DYGCGNGFYCKYLLEFATKLY----CID-INVIALKEVKEKFDSVITLSDPKEIPDNSVD 77

Query: 329 LVHASSGL-DVGGQPEKLEFLMFDFDRILRAGGLFWLDNF 367
            +  ++   D+    +K   +  +  RIL+  G   + ++
Sbjct: 78  FILFANSFHDM---DDKQHVIS-EVKRILKDDGRVIIIDW 113

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 16/111 (14%)

Query: 270 DIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAARGLFPL--YLSLD-HRFPFY 323
           DIG G+G     +A      VT +         ++      GL      +       PF 
Sbjct: 52  DIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFR 111

Query: 324 DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLF------WLDNFY 368
           +   DL+ +   +   G    L     ++ + L+ GG        W  +  
Sbjct: 112 NEELDLIWSEGAIYNIGFERGLN----EWRKYLKKGGYLAVSECSWFTDER 158

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 13/123 (10%)

Query: 270 DIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGLFPLYLSL-D-HRFPFYDN 325
           DIG G+G  A   +        +  T  +    S F   +G+  +          PF D+
Sbjct: 27  DIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86

Query: 326 VFDLVHASSGL-DVGGQPEKLEFL--MFDFDRILRAGGLFWLDNFYCANDEKKSALTRLI 382
            FD++             +  + +  +    R+L+  G F L + Y   D         +
Sbjct: 87  SFDIITCRYAAHHF---SDVRKAVREVA---RVLKQDGRFLLVDHYAPEDPVLDEFVNHL 140

Query: 383 ERF 385
            R 
Sbjct: 141 NRL 143

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 18/101 (17%)

Query: 270 DIGGGSGTFAARMAERNVTVITNTLNVDAPYSE-FIA-ARGLFP------LYLSLDHRFP 321
           D+G G G     +A+R +  +     VD       +  AR           Y  L     
Sbjct: 58  DLGCGEGWLLRALADRGIEAV----GVDG--DRTLVDAARAAGAGEVHLASYAQLAEAKV 111

Query: 322 FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLF 362
                +DL+ A+  L      + +  L+     +L  GG  
Sbjct: 112 PVGKDYDLICANFAL----LHQDIIELLSAMRTLLVPGGAL 148

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 15/140 (10%)

Query: 230 GCFDLDNPNENQRYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---N 286
           G ++    + +      R   D +I   L + SG  R+  D+G G G  A R+A      
Sbjct: 31  GYWEDAGADVSVDDATDR-LTDEMIAL-LDVRSGD-RV-LDVGCGIGKPAVRLATARDVR 86

Query: 287 VTVITNTLNVDAPYSEFIAARGLFPL--YLSLD-HRFPFYDNVFDLVHAS-SGLDVGGQP 342
           VT I+ +       +    A GL     +   D    PF D  FD V A  S   +   P
Sbjct: 87  VTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHM---P 143

Query: 343 EKLEFLMFDFDRILRAGGLF 362
           ++   L  +  R+LR GG  
Sbjct: 144 DRGRALR-EMARVLRPGGTV 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	418
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.75
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.72
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.71
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.7
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.69
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.69
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.69
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.68
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.67
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.67
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.66
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.66
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.66
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.66
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.65
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.65
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.65
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.65
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.64
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.64
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.64
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.64
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.64
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.64
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.63
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.63
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.63
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.62
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.62
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.62
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.62
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.62
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.62
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.61
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.61
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.61
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.61
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.61
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.61
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.6
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.6
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.6
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.6
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.6
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.59
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.59
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.59
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.59
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.58
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.58
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.58
3ocj_A	305	Putative exported protein; structural genomics, PS	99.58
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.57
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.57
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.57
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.57
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.57
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.56
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.56
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.56
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.56
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.54
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.54
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.52
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.52
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.52
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.52
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.52
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.51
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.51
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.5
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.49
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.49
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.47
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.47
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.45
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.45
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.43
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.42
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.42
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.4
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.4
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.4
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.4
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.4
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.39
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.39
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.39
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.39
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.39
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.39
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.38
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.38
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.38
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.38
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.37
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.37
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.37
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.37
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.36
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.36
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.36
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.36
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.35
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.35
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.34
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.34
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.33
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.32
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.31
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.31
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.31
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.31
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.31
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.31
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.3
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.3
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.3
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.29
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.29
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.29
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.29
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.28
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.28
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.27
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.27
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.27
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.27
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.27
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.26
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.26
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.26
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.25
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.25
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.24
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.23
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.23
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.23
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.23
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.22
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.21
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.21
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.21
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.21
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.2
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.2
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.2
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.19
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.19
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.19
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.19
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.18
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.18
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.18
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.18
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.18
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.16
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.16
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.16
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.15
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.15
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.14
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.14
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.14
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.13
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.13
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.12
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.12
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.12
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.12
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.1
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.1
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.1
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.1
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.09
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.09
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.08
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.08
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.07
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.07
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.06
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.06
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.06
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.04
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.04
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.04
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.03
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.03
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.02
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.01
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.0
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.99
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.99
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.99
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.99
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.98
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.98
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.98
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.98
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.97
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.97
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.97
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.97
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.96
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.96
2o07_A	304	Spermidine synthase; structural genomics, structur	98.96
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.96
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.96
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.95
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.95
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.94
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.94
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.94
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.93
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.93
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.93
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.93
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.91
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.91
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.9
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.9
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.9
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.89
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.87
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.87
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.87
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.85
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.85
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.83
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.82
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.81
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.77
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.77
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.75
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.72
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.7
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.7
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.69
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.64
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.63
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.6
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.59
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.58
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.57
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.56
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.53
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.53
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.51
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.5
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.5
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.5
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.47
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.46
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.38
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.33
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.28
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.25
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.22
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.21
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.13
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.08
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.05
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.02
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.02
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.95
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	97.94
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	97.92
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.91
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.85
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.74
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.74
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.69
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.67
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.62
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.58
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.56
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.54
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.52
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.5
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.49
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.49
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.47
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.44
3khk_A	544	Type I restriction-modification system methylation	97.35
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.3
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.15
3lkd_A	542	Type I restriction-modification system methyltrans	97.01
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	96.92
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.85
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	96.77
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	96.51
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.4
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	96.34
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.14
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.09
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	95.96
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	95.94
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.82
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	95.48
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	94.98
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	94.42
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.29
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	94.04
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	93.35
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.34
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	93.3
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	92.8
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	92.48
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	92.02
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	91.65
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	91.6
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	91.03
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	91.01
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	90.95
3ufb_A	530	Type I restriction-modification system methyltran	90.92
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	90.87
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	90.34
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	90.09
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	90.06
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	89.67
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	88.66
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	88.25
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	88.19
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	88.17
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	87.79
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	87.03
3gms_A	340	Putative NADPH:quinone reductase; structural genom	86.83
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	86.81
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	86.06
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	85.79
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	85.62
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	85.23
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	85.09
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	85.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	84.8
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	84.76
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	84.7
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	84.57
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	84.54
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	84.36
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	84.15
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	84.15
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	83.79
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	83.19
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	82.96
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	82.53
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	81.79
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	81.71
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	81.43
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	81.38
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	81.19
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	81.17
4eye_A	342	Probable oxidoreductase; structural genomics, niai	80.83
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	80.57
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	80.4
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	80.3

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.75  E-value=7.2e-17  Score=147.79  Aligned_cols=154  Identities=12%  Similarity=0.145  Sum_probs=113.7

Q ss_pred             CcHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC--CceeecccCCCCCCCCc
Q 037675          249 KNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL--FPLYLSLDHRFPFYDNV  326 (418)
Q Consensus       249 ~y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl--i~~~~~~~e~LPf~d~s  326 (418)
                      .|...+..+ ...++  .+|||+|||+|.++..|++++..++  ++|+++.+++.++++..  +.+..++.+.+|++ ++
T Consensus        33 ~~~~~l~~~-~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~  106 (220)
T 3hnr_A           33 HYEDILEDV-VNKSF--GNVLEFGVGTGNLTNKLLLAGRTVY--GIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TS  106 (220)
T ss_dssp             THHHHHHHH-HHTCC--SEEEEECCTTSHHHHHHHHTTCEEE--EECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SC
T ss_pred             HHHHHHHHh-hccCC--CeEEEeCCCCCHHHHHHHhCCCeEE--EEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CC
Confidence            344555543 33333  4899999999999999999987765  58999999999988732  46777888899988 99


Q ss_pred             cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchh---------------------------HHHHHH
Q 037675          327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDE---------------------------KKSALT  379 (418)
Q Consensus       327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee---------------------------~~~~~~  379 (418)
                      ||+|++..++++..++. ...+|.++.|+|||||++++.++......                           ..+.+.
T Consensus       107 fD~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (220)
T 3hnr_A          107 IDTIVSTYAFHHLTDDE-KNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQ  185 (220)
T ss_dssp             CSEEEEESCGGGSCHHH-HHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHH
T ss_pred             eEEEEECcchhcCChHH-HHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHH
Confidence            99999999999986554 23499999999999999999876332210                           125688


Q ss_pred             HHHHHcCcEEEEEEEcccCCCCccceEEEEEEEcCCCC
Q 037675          380 RLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPVRV  417 (418)
Q Consensus       380 ~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qKP~~~  417 (418)
                      .++++.||+.+.....        .....+..+||...
T Consensus       186 ~~l~~aGf~v~~~~~~--------~~~w~~~~~~~~~~  215 (220)
T 3hnr_A          186 TIFENNGFHVTFTRLN--------HFVWVMEATKQLEH  215 (220)
T ss_dssp             HHHHHTTEEEEEEECS--------SSEEEEEEEECSCC
T ss_pred             HHHHHCCCEEEEeecc--------ceEEEEeehhhhhh
Confidence            9999999976643331        22334456676554

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.72  E-value=1.1e-16  Score=146.09  Aligned_cols=158  Identities=19%  Similarity=0.182  Sum_probs=120.9

Q ss_pred             HHHHHHc-cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEE
Q 037675          253 LIDDVLA-LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVH  331 (418)
Q Consensus       253 ~I~~lL~-l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~  331 (418)
                      .+..++. +.++  .+|||+|||+|.++..|++++..++  ++|+++.+++.++++--+.+..++...+| ++++||+|+
T Consensus        33 ~~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~  107 (211)
T 3e23_A           33 TLTKFLGELPAG--AKILELGCGAGYQAEAMLAAGFDVD--ATDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVW  107 (211)
T ss_dssp             HHHHHHTTSCTT--CEEEESSCTTSHHHHHHHHTTCEEE--EEESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEE
T ss_pred             HHHHHHHhcCCC--CcEEEECCCCCHHHHHHHHcCCeEE--EECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEE
Confidence            4444443 4444  5899999999999999999987765  58999999999988732366777788888 899999999


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch-----------hHHHHHHHHHHHcC-cEEEEEEEcccCC
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND-----------EKKSALTRLIERFG-YKKLKWVVGEKGE  399 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e-----------e~~~~~~~l~~~~G-fk~l~W~~~~k~d  399 (418)
                      +..+++++. ..+...+|.++.|+|||||++++..+.....           ...+.+..++++.| |+.+.........
T Consensus       108 ~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~  186 (211)
T 3e23_A          108 AHACLLHVP-RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKG  186 (211)
T ss_dssp             ECSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEEC
T ss_pred             ecCchhhcC-HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCC
Confidence            999999986 3456799999999999999999886533211           13467899999999 9998866544332


Q ss_pred             -CCccceEEEEEEEcCCC
Q 037675          400 -TGKSEVYLSAVLQKPVR  416 (418)
Q Consensus       400 -~~~~e~~l~Ai~qKP~~  416 (418)
                       .+..+.|+.++..||..
T Consensus       187 ~~~~~~~wl~~~~~~~~~  204 (211)
T 3e23_A          187 FDQELAQFLHVSVRKPEL  204 (211)
T ss_dssp             TTSCEEEEEEEEEECCCC
T ss_pred             CCCCCceEEEEEEecCcc
Confidence             23446788888887754

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.71  E-value=2.3e-16  Score=142.93  Aligned_cols=156  Identities=14%  Similarity=0.108  Sum_probs=116.5

Q ss_pred             HHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccce
Q 037675          251 DFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDL  329 (418)
Q Consensus       251 ~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDl  329 (418)
                      ...+..++... +  .+|||+|||+|.++..|++++..++  ++|+++.|++.++++.. +.+..++.+.+|+++++||+
T Consensus        31 ~~~l~~~~~~~-~--~~vLDiGcG~G~~~~~l~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~  105 (203)
T 3h2b_A           31 RVLIEPWATGV-D--GVILDVGSGTGRWTGHLASLGHQIE--GLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAG  105 (203)
T ss_dssp             HHHHHHHHHHC-C--SCEEEETCTTCHHHHHHHHTTCCEE--EECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEE
T ss_pred             HHHHHHHhccC-C--CeEEEecCCCCHHHHHHHhcCCeEE--EEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEE
Confidence            34555554433 2  4899999999999999999987664  47999999999998742 35666788889999999999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc------------hhHHHHHHHHHHHcCcEEEEEEEccc
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN------------DEKKSALTRLIERFGYKKLKWVVGEK  397 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~------------ee~~~~~~~l~~~~Gfk~l~W~~~~k  397 (418)
                      |++..+++++.. ++...+|.++.|+|||||++++..+....            ....+.+..++++.||+.+.......
T Consensus       106 v~~~~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  184 (203)
T 3h2b_A          106 LLAWYSLIHMGP-GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR  184 (203)
T ss_dssp             EEEESSSTTCCT-TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred             EEehhhHhcCCH-HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence            999999999852 34569999999999999999998763321            11245689999999999987655332


Q ss_pred             CCCCccceEEEEEEEcCCC
Q 037675          398 GETGKSEVYLSAVLQKPVR  416 (418)
Q Consensus       398 ~d~~~~e~~l~Ai~qKP~~  416 (418)
                          +.+.++...-++|..
T Consensus       185 ----~p~~~l~~~~~~~~~  199 (203)
T 3h2b_A          185 ----FPHAYLTAEASLEHH  199 (203)
T ss_dssp             ----SSEEEEEEEECC---
T ss_pred             ----Ccchhhhhhhhhhhh
Confidence                456566555454544

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.70  E-value=1.5e-16  Score=149.96  Aligned_cols=131  Identities=20%  Similarity=0.265  Sum_probs=103.1

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccceE
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFDLV  330 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFDlV  330 (418)
                      .+.+.++  .+|||+|||+|.++..|++++..++  ++|+++.|++.++++    |+  +.+..++.+.+|+++++||+|
T Consensus        32 ~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~--gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V  107 (260)
T 1vl5_A           32 IAALKGN--EEVLDVATGGGHVANAFAPFVKKVV--AFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIV  107 (260)
T ss_dssp             HHTCCSC--CEEEEETCTTCHHHHHHGGGSSEEE--EEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEE
T ss_pred             HhCCCCC--CEEEEEeCCCCHHHHHHHHhCCEEE--EEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEE
Confidence            3455544  5999999999999999999876554  589999999887664    43  345667889999999999999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch---------------------hHHHHHHHHHHHcCcEE
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND---------------------EKKSALTRLIERFGYKK  389 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e---------------------e~~~~~~~l~~~~Gfk~  389 (418)
                      ++..+++|+.++.   .+|.|+.|+|||||++++.++.....                     ...+.+..++++.||+.
T Consensus       108 ~~~~~l~~~~d~~---~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  184 (260)
T 1vl5_A          108 TCRIAAHHFPNPA---SFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFEL  184 (260)
T ss_dssp             EEESCGGGCSCHH---HHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEE
T ss_pred             EEhhhhHhcCCHH---HHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeE
Confidence            9999999997665   89999999999999999876533210                     11246888999999998


Q ss_pred             EEEEE
Q 037675          390 LKWVV  394 (418)
Q Consensus       390 l~W~~  394 (418)
                      +.+..
T Consensus       185 ~~~~~  189 (260)
T 1vl5_A          185 EELHC  189 (260)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77554

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.69  E-value=1.4e-16  Score=144.43  Aligned_cols=123  Identities=18%  Similarity=0.336  Sum_probs=99.2

Q ss_pred             eEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCcCcC
Q 037675          267 IGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      +|||+|||+|.++..|+++ +..++  ++|+++.+++.++++    ++   +.+..++.+.+|+++++||+|++..++++
T Consensus        46 ~vLdiG~G~G~~~~~l~~~~~~~v~--~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~  123 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQSDFSIR--ALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF  123 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHHSEEEEE--EEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred             EEEEECCCCCHHHHHHHHcCCCeEE--EEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence            8999999999999999987 44553  589999999887765    33   35566788999999999999999999999


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEecccCc--------------------------hhHHHHHHHHHHHcCcEEEEE
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN--------------------------DEKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--------------------------ee~~~~~~~l~~~~Gfk~l~W  392 (418)
                      +.+..   .++.++.|+|||||++++.+.+...                          ....+.+..++++.||+.+..
T Consensus       124 ~~~~~---~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  200 (219)
T 3dlc_A          124 WEDVA---TAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEI  200 (219)
T ss_dssp             CSCHH---HHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEE
T ss_pred             ccCHH---HHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEE
Confidence            86554   8999999999999999998643221                          012256889999999998865


Q ss_pred             EE
Q 037675          393 VV  394 (418)
Q Consensus       393 ~~  394 (418)
                      ..
T Consensus       201 ~~  202 (219)
T 3dlc_A          201 IL  202 (219)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.69  E-value=2.3e-16  Score=145.55  Aligned_cols=134  Identities=15%  Similarity=0.114  Sum_probs=104.0

Q ss_pred             HHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC--CceeecccCCCCCCCCccce
Q 037675          252 FLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL--FPLYLSLDHRFPFYDNVFDL  329 (418)
Q Consensus       252 ~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl--i~~~~~~~e~LPf~d~sFDl  329 (418)
                      +.++.+....++  .+|||+|||+|.++..|++++..++  ++|+++.+++.++++..  +.+..++.+.+ +++++||+
T Consensus        32 ~~~~~l~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~--gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~  106 (250)
T 2p7i_A           32 FMVRAFTPFFRP--GNLLELGSFKGDFTSRLQEHFNDIT--CVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDN  106 (250)
T ss_dssp             HHHHHHGGGCCS--SCEEEESCTTSHHHHHHTTTCSCEE--EEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEE
T ss_pred             HHHHHHHhhcCC--CcEEEECCCCCHHHHHHHHhCCcEE--EEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccE
Confidence            344443334444  4799999999999999999876654  47999999999988742  35566777777 57899999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhh-ccccCCcEEEEEecccCc-----------------------------hhHHHHHH
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFD-RILRAGGLFWLDNFYCAN-----------------------------DEKKSALT  379 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~-RVLRPGG~~ii~~~~~~~-----------------------------ee~~~~~~  379 (418)
                      |++..+++|..++.   .+|.|+. |+|||||++++..+....                             .-..+.+.
T Consensus       107 v~~~~~l~~~~~~~---~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (250)
T 2p7i_A          107 IVLTHVLEHIDDPV---ALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLE  183 (250)
T ss_dssp             EEEESCGGGCSSHH---HHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHH
T ss_pred             EEEhhHHHhhcCHH---HHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHH
Confidence            99999999997664   8999999 999999999998753210                             00235689


Q ss_pred             HHHHHcCcEEEEEE
Q 037675          380 RLIERFGYKKLKWV  393 (418)
Q Consensus       380 ~l~~~~Gfk~l~W~  393 (418)
                      .+++..||+.+.+.
T Consensus       184 ~~l~~~Gf~~~~~~  197 (250)
T 2p7i_A          184 RDASRAGLQVTYRS  197 (250)
T ss_dssp             HHHHHTTCEEEEEE
T ss_pred             HHHHHCCCeEEEEe
Confidence            99999999988754

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.69  E-value=6.5e-17  Score=155.69  Aligned_cols=96  Identities=15%  Similarity=0.118  Sum_probs=83.8

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhHH
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKL  345 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~l  345 (418)
                      .+|||||||+|.++..|++++..++  ++|+|+.|++.|+++.-+.+.+++++.+|+++++||+|+|..++|+. ++.  
T Consensus        41 ~~vLDvGcGtG~~~~~l~~~~~~v~--gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~-~~~--  115 (257)
T 4hg2_A           41 GDALDCGCGSGQASLGLAEFFERVH--AVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF-DLD--  115 (257)
T ss_dssp             SEEEEESCTTTTTHHHHHTTCSEEE--EEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTC-CHH--
T ss_pred             CCEEEEcCCCCHHHHHHHHhCCEEE--EEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHh-hHH--
Confidence            5899999999999999999987765  58999999998876655577788999999999999999999999766 333  


Q ss_pred             HHHHHHhhccccCCcEEEEEec
Q 037675          346 EFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       346 e~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                       .++.|+.|+|||||.|++..+
T Consensus       116 -~~~~e~~rvLkpgG~l~~~~~  136 (257)
T 4hg2_A          116 -RFWAELRRVARPGAVFAAVTY  136 (257)
T ss_dssp             -HHHHHHHHHEEEEEEEEEEEE
T ss_pred             -HHHHHHHHHcCCCCEEEEEEC
Confidence             899999999999999977665

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.68  E-value=8.6e-16  Score=140.52  Aligned_cols=145  Identities=14%  Similarity=0.207  Sum_probs=109.6

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCcc
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVF  327 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sF  327 (418)
                      .+.+.++  .+|||+|||+|.++..+++.+   ..++  ++|+++.+++.++++    ++  +.+..++.+.+|+++++|
T Consensus        32 ~~~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~f  107 (219)
T 3dh0_A           32 EFGLKEG--MTVLDVGTGAGFYLPYLSKMVGEKGKVY--AIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTV  107 (219)
T ss_dssp             HHTCCTT--CEEEESSCTTCTTHHHHHHHHTTTCEEE--EEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCE
T ss_pred             HhCCCCC--CEEEEEecCCCHHHHHHHHHhCCCcEEE--EEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCe
Confidence            3455554  489999999999999999874   4554  589999999887664    33  345667888999999999


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch---------hHHHHHHHHHHHcCcEEEEEEEcccC
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND---------EKKSALTRLIERFGYKKLKWVVGEKG  398 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e---------e~~~~~~~l~~~~Gfk~l~W~~~~k~  398 (418)
                      |+|++..+++++.+..   .++.++.|+|||||++++.++.....         ...+.+..++++.||+.+......  
T Consensus       108 D~v~~~~~l~~~~~~~---~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~--  182 (219)
T 3dh0_A          108 DFIFMAFTFHELSEPL---KFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVG--  182 (219)
T ss_dssp             EEEEEESCGGGCSSHH---HHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEET--
T ss_pred             eEEEeehhhhhcCCHH---HHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeC--
Confidence            9999999999997654   89999999999999999987633210         123568999999999988753321  


Q ss_pred             CCCccceEEEEEEEcCC
Q 037675          399 ETGKSEVYLSAVLQKPV  415 (418)
Q Consensus       399 d~~~~e~~l~Ai~qKP~  415 (418)
                           ...+..+.+||.
T Consensus       183 -----~~~~~~~~~k~~  194 (219)
T 3dh0_A          183 -----KYCFGVYAMIVK  194 (219)
T ss_dssp             -----TTEEEEEEECC-
T ss_pred             -----CceEEEEEEecc
Confidence                 223455677764

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.67  E-value=1.4e-15  Score=140.51  Aligned_cols=99  Identities=14%  Similarity=0.184  Sum_probs=83.9

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----C-CCceeecccCCCCCCCCccceEEecC-cCcC
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----G-LFPLYLSLDHRFPFYDNVFDLVHASS-GLDV  338 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----G-li~~~~~~~e~LPf~d~sFDlV~s~~-~L~~  338 (418)
                      ..+|||+|||+|.++..|++.+..++  ++|+++.|++.++++    + -+.+..++...+|++ ++||+|++.. ++++
T Consensus        38 ~~~vLdiG~G~G~~~~~l~~~~~~~~--~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           38 FDDYLDLACGTGNLTENLCPKFKNTW--AVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNY  114 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGSSEEE--EECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGG
T ss_pred             CCeEEEeCCCCCHHHHHHHHCCCcEE--EEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCccccc
Confidence            35899999999999999999987764  589999999887765    2 235666788888877 8999999998 9999


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +.++.+...+|.++.|+|||||+++++.
T Consensus       115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (246)
T 1y8c_A          115 IIDSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             CCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            8776778899999999999999998853

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.67  E-value=1.4e-15  Score=146.53  Aligned_cols=114  Identities=13%  Similarity=0.091  Sum_probs=87.9

Q ss_pred             cCCcHHHHHH---HHc--cCCCCCCeEEEECCccChHHHHHhhc----CcEEEEeccCCCHHhHHHHHHc----CC---C
Q 037675          247 RGKNDFLIDD---VLA--LGSGGIRIGFDIGGGSGTFAARMAER----NVTVITNTLNVDAPYSEFIAAR----GL---F  310 (418)
Q Consensus       247 ~~~y~~~I~~---lL~--l~~g~~r~VLDvGCGtG~faa~La~~----gV~vv~~alD~s~~~l~~a~eR----Gl---i  310 (418)
                      ..+|...++.   ++.  +++|  .+|||+|||+|.++..|+++    |+.++  ++|+|+.|++.|+++    +.   +
T Consensus        50 vP~Y~~~~~~i~~l~~~~~~~~--~~vLDlGcGtG~~~~~la~~~~~~~~~v~--gvD~s~~ml~~A~~~~~~~~~~~~v  125 (261)
T 4gek_A           50 VPGYSNIISMIGMLAERFVQPG--TQVYDLGCSLGAATLSVRRNIHHDNCKII--AIDNSPAMIERCRRHIDAYKAPTPV  125 (261)
T ss_dssp             STTHHHHHHHHHHHHHHHCCTT--CEEEEETCTTTHHHHHHHHTCCSSSCEEE--EEESCHHHHHHHHHHHHTSCCSSCE
T ss_pred             CCCHHHHHHHHHHHHHHhCCCC--CEEEEEeCCCCHHHHHHHHhcCCCCCEEE--EEECCHHHHHHHHHHHHhhccCceE
Confidence            3467664332   222  4555  48999999999999999875    45665  589999999998875    32   3


Q ss_pred             ceeecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          311 PLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       311 ~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .+..++...+|++  .||+|++..++++..+ .+...+|.|++|+|||||+|++.+.
T Consensus       126 ~~~~~D~~~~~~~--~~d~v~~~~~l~~~~~-~~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          126 DVIEGDIRDIAIE--NASMVVLNFTLQFLEP-SERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             EEEESCTTTCCCC--SEEEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEeeccccccccc--ccccceeeeeeeecCc-hhHhHHHHHHHHHcCCCcEEEEEec
Confidence            4556788888875  4999999999998754 3456799999999999999999875

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.66  E-value=8.7e-16  Score=143.72  Aligned_cols=131  Identities=17%  Similarity=0.228  Sum_probs=103.2

Q ss_pred             HHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccce
Q 037675          256 DVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFDL  329 (418)
Q Consensus       256 ~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFDl  329 (418)
                      +.+.+.++  .+|||+|||+|.++..+++.+..++  ++|+++.+++.++++    |+  +.+..++.+.+|+++++||+
T Consensus        15 ~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~   90 (239)
T 1xxl_A           15 KTAECRAE--HRVLDIGAGAGHTALAFSPYVQECI--GVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDI   90 (239)
T ss_dssp             HHHTCCTT--CEEEEESCTTSHHHHHHGGGSSEEE--EEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEE
T ss_pred             HHhCcCCC--CEEEEEccCcCHHHHHHHHhCCEEE--EEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEE
Confidence            34455555  5899999999999999999876654  589999999877654    43  34556788899999999999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch---------------------hHHHHHHHHHHHcCcE
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND---------------------EKKSALTRLIERFGYK  388 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e---------------------e~~~~~~~l~~~~Gfk  388 (418)
                      |++..+++++.+..   .++.++.|+|||||++++.++.....                     ...+.+..++++.||+
T Consensus        91 v~~~~~l~~~~~~~---~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~  167 (239)
T 1xxl_A           91 ITCRYAAHHFSDVR---KAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLA  167 (239)
T ss_dssp             EEEESCGGGCSCHH---HHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEE
T ss_pred             EEECCchhhccCHH---HHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCc
Confidence            99999999997654   89999999999999999876533210                     1135688899999999


Q ss_pred             EEEEE
Q 037675          389 KLKWV  393 (418)
Q Consensus       389 ~l~W~  393 (418)
                      .+...
T Consensus       168 ~~~~~  172 (239)
T 1xxl_A          168 YQDIQ  172 (239)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77643

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.66  E-value=2.3e-15  Score=138.03  Aligned_cols=128  Identities=19%  Similarity=0.274  Sum_probs=105.0

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-------CceeecccCCCCCCCCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-------FPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-------i~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      .+|||+|||+|.++..+++++..++  ++|+++.+++.++++    ++       +.+..++...+|+++++||+|++..
T Consensus        32 ~~vLdiG~G~G~~~~~l~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  109 (235)
T 3sm3_A           32 DEILDIGCGSGKISLELASKGYSVT--GIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQA  109 (235)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEE--EEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEES
T ss_pred             CeEEEECCCCCHHHHHHHhCCCeEE--EEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcc
Confidence            4899999999999999999987765  589999999988874    22       2445578888999999999999999


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-------------------------------------hhHHHH
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-------------------------------------DEKKSA  377 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-------------------------------------ee~~~~  377 (418)
                      +++++.++.....++.++.|+|||||++++.++....                                     ....++
T Consensus       110 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (235)
T 3sm3_A          110 FLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKE  189 (235)
T ss_dssp             CGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHH
T ss_pred             hhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHH
Confidence            9999988777778999999999999999998652210                                     012457


Q ss_pred             HHHHHHHcCcEEEEEEEc
Q 037675          378 LTRLIERFGYKKLKWVVG  395 (418)
Q Consensus       378 ~~~l~~~~Gfk~l~W~~~  395 (418)
                      +..++++.||+.+.+...
T Consensus       190 l~~ll~~aGf~~~~~~~~  207 (235)
T 3sm3_A          190 LVFLLTDCRFEIDYFRVK  207 (235)
T ss_dssp             HHHHHHTTTEEEEEEEEE
T ss_pred             HHHHHHHcCCEEEEEEec
Confidence            899999999999886653

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.66  E-value=1e-15  Score=144.63  Aligned_cols=98  Identities=16%  Similarity=0.144  Sum_probs=85.5

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccceEEecC-cCcCCCChh
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDLVHASS-GLDVGGQPE  343 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~~-~L~~~~~~~  343 (418)
                      .+|||+|||+|.++..|++++..++  ++|+++.+++.++++.. +.+..++...+|+ +++||+|++.. ++++..++.
T Consensus        52 ~~vLDiGcG~G~~~~~l~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~  128 (263)
T 3pfg_A           52 ASLLDVACGTGMHLRHLADSFGTVE--GLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQA  128 (263)
T ss_dssp             CEEEEETCTTSHHHHHHTTTSSEEE--EEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHH
T ss_pred             CcEEEeCCcCCHHHHHHHHcCCeEE--EEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHH
Confidence            5899999999999999999987664  47999999999988732 3666788888888 88999999997 999987777


Q ss_pred             HHHHHHHHhhccccCCcEEEEEe
Q 037675          344 KLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       344 ~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +...+|.++.|+|||||++++..
T Consensus       129 ~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          129 ELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEe
Confidence            78899999999999999999863

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.66  E-value=2.3e-15  Score=137.66  Aligned_cols=147  Identities=16%  Similarity=0.198  Sum_probs=104.4

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      ..+|||+|||+|.++..|++++..++  ++|+++.+++.++++.    -+.+..++.+.++ ++++||+|++..+++|..
T Consensus        52 ~~~vLDiGcG~G~~~~~l~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~  128 (216)
T 3ofk_A           52 VSNGLEIGCAAGAFTEKLAPHCKRLT--VIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYYLE  128 (216)
T ss_dssp             EEEEEEECCTTSHHHHHHGGGEEEEE--EEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSS
T ss_pred             CCcEEEEcCCCCHHHHHHHHcCCEEE--EEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHhCC
Confidence            35899999999999999999875554  5899999999988863    2355667888888 789999999999999998


Q ss_pred             ChhHHHHHHHHhhccccCCcEEEEEecccC------chhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEEEEEcC
Q 037675          341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCA------NDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKP  414 (418)
Q Consensus       341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~------~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qKP  414 (418)
                      ++..+..++.++.|+|||||++++..+...      .....+.+..++... +..+.......  ...++-++.++++||
T Consensus       129 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~--~~~~~d~~l~~~~~~  205 (216)
T 3ofk_A          129 DMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTEA-LTEVERVQCQG--QSADEDCLLARFRNP  205 (216)
T ss_dssp             SHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTTCSCCHHHHHHHHHHH-SEEEEEEEEEC--SSTTCEEEEEEEECC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhhhhhhHHHHHHHHHhh-ccceEEEeccC--CccccchhHHHHhCC
Confidence            887777899999999999999999765221      111112233333321 44433111111  113456778899998


Q ss_pred             CCC
Q 037675          415 VRV  417 (418)
Q Consensus       415 ~~~  417 (418)
                      ...
T Consensus       206 ~~~  208 (216)
T 3ofk_A          206 ERS  208 (216)
T ss_dssp             C--
T ss_pred             ccc
Confidence            653

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.65  E-value=1.3e-15  Score=138.66  Aligned_cols=123  Identities=15%  Similarity=0.163  Sum_probs=97.6

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC---CCCCC-ccceEEecCcCcCCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF---PFYDN-VFDLVHASSGLDVGGQ  341 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L---Pf~d~-sFDlV~s~~~L~~~~~  341 (418)
                      .+|||+|||+|.++..|++++..++  ++|+++.+++.+++++.+.+...+.+.+   |+.++ +||+|++..+++ ..+
T Consensus        54 ~~vLdiG~G~G~~~~~l~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~  130 (227)
T 3e8s_A           54 ERVLDLGCGEGWLLRALADRGIEAV--GVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQD  130 (227)
T ss_dssp             SEEEEETCTTCHHHHHHHTTTCEEE--EEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSC
T ss_pred             CEEEEeCCCCCHHHHHHHHCCCEEE--EEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-hhh
Confidence            5899999999999999999987765  5899999999999997656666555444   65555 599999999998 544


Q ss_pred             hhHHHHHHHHhhccccCCcEEEEEecccCc----------------------------hhHHHHHHHHHHHcCcEEEEEE
Q 037675          342 PEKLEFLMFDFDRILRAGGLFWLDNFYCAN----------------------------DEKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       342 ~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~----------------------------ee~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      ..   .++.++.|+|||||++++.++....                            -...+.+..++++.||+.+...
T Consensus       131 ~~---~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  207 (227)
T 3e8s_A          131 II---ELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQ  207 (227)
T ss_dssp             CH---HHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred             HH---HHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEe
Confidence            44   8999999999999999998752110                            0024679999999999998765


Q ss_pred             E
Q 037675          394 V  394 (418)
Q Consensus       394 ~  394 (418)
                      .
T Consensus       208 ~  208 (227)
T 3e8s_A          208 E  208 (227)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.65  E-value=1e-15  Score=143.26  Aligned_cols=135  Identities=15%  Similarity=0.234  Sum_probs=103.4

Q ss_pred             cHHHHHHHH---ccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccC
Q 037675          250 NDFLIDDVL---ALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDH  318 (418)
Q Consensus       250 y~~~I~~lL---~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e  318 (418)
                      +...+..++   .+.++  .+|||+|||+|.++..|++. +..++  ++|+++.|++.++++    |+   +.+..++.+
T Consensus        21 ~~~~~~~l~~~~~~~~~--~~VLDiGcG~G~~~~~la~~~~~~v~--gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~   96 (256)
T 1nkv_A           21 TEEKYATLGRVLRMKPG--TRILDLGSGSGEMLCTWARDHGITGT--GIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA   96 (256)
T ss_dssp             CHHHHHHHHHHTCCCTT--CEEEEETCTTCHHHHHHHHHTCCEEE--EEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT
T ss_pred             CHHHHHHHHHhcCCCCC--CEEEEECCCCCHHHHHHHHhcCCeEE--EEeCCHHHHHHHHHHHHhcCCCcceEEEECChH
Confidence            444444443   34444  58999999999999999986 66664  589999999887654    43   355667888


Q ss_pred             CCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc----hh--------------HHHHHHH
Q 037675          319 RFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN----DE--------------KKSALTR  380 (418)
Q Consensus       319 ~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~----ee--------------~~~~~~~  380 (418)
                      .+|+ +++||+|++..+++++.+..   .+|.|+.|+|||||++++.++.+..    +.              ..+.+..
T Consensus        97 ~~~~-~~~fD~V~~~~~~~~~~~~~---~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (256)
T 1nkv_A           97 GYVA-NEKCDVAACVGATWIAGGFA---GAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVG  172 (256)
T ss_dssp             TCCC-SSCEEEEEEESCGGGTSSSH---HHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHH
T ss_pred             hCCc-CCCCCEEEECCChHhcCCHH---HHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHH
Confidence            8888 89999999999999987654   8999999999999999998764321    11              1256889


Q ss_pred             HHHHcCcEEEEE
Q 037675          381 LIERFGYKKLKW  392 (418)
Q Consensus       381 l~~~~Gfk~l~W  392 (418)
                      ++++.||+.+..
T Consensus       173 ~l~~aGf~~~~~  184 (256)
T 1nkv_A          173 AFDDLGYDVVEM  184 (256)
T ss_dssp             HHHTTTBCCCEE
T ss_pred             HHHHCCCeeEEE
Confidence            999999998764

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.65  E-value=5.4e-16  Score=144.75  Aligned_cols=127  Identities=13%  Similarity=0.114  Sum_probs=101.2

Q ss_pred             CCeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCCccceEEecCcCcCC
Q 037675          265 IRIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      ..+|||+|||+|.++..|++++. .+  .++|+++.+++.++++.    .+.+..++.+.+|+++++||+|++..+++++
T Consensus        94 ~~~vLDiG~G~G~~~~~l~~~~~~~v--~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  171 (254)
T 1xtp_A           94 TSRALDCGAGIGRITKNLLTKLYATT--DLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYL  171 (254)
T ss_dssp             CSEEEEETCTTTHHHHHTHHHHCSEE--EEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred             CCEEEEECCCcCHHHHHHHHhhcCEE--EEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhC
Confidence            46999999999999999998753 33  35799999999998873    2345567888899999999999999999998


Q ss_pred             CChhHHHHHHHHhhccccCCcEEEEEecccCc------------hhHHHHHHHHHHHcCcEEEEEEE
Q 037675          340 GQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN------------DEKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       340 ~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~------------ee~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      .+ .+...+|.++.|+|||||++++.++....            ....+.+..++++.||+.+....
T Consensus       172 ~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  237 (254)
T 1xtp_A          172 TD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF  237 (254)
T ss_dssp             CH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred             CH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence            54 45679999999999999999998752211            01235689999999999987654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.65  E-value=1e-15  Score=143.24  Aligned_cols=127  Identities=14%  Similarity=0.149  Sum_probs=103.6

Q ss_pred             CCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCCccceEEecCcCcCC
Q 037675          265 IRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      ..+|||+|||+|.++..|+++ +..++  ++|+++.+++.++++.    .+.+..++...+|+++++||+|++..+++|+
T Consensus        56 ~~~vLdiG~G~G~~~~~l~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  133 (266)
T 3ujc_A           56 NSKVLDIGSGLGGGCMYINEKYGAHTH--GIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILAL  133 (266)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCCEEE--EEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGGS
T ss_pred             CCEEEEECCCCCHHHHHHHHHcCCEEE--EEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHhc
Confidence            358999999999999999987 77665  4899999999999874    2345667888899999999999999999998


Q ss_pred             CChhHHHHHHHHhhccccCCcEEEEEecccCc-----h-------------hHHHHHHHHHHHcCcEEEEEEE
Q 037675          340 GQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-----D-------------EKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       340 ~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-----e-------------e~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      . ..+...++.++.|+|||||++++.++....     +             ...+.+..+++..||+.+....
T Consensus       134 ~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  205 (266)
T 3ujc_A          134 S-LENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKD  205 (266)
T ss_dssp             C-HHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             C-hHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEe
Confidence            4 345669999999999999999998763322     0             0135688999999999887554

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.64  E-value=6.7e-15  Score=135.02  Aligned_cols=146  Identities=13%  Similarity=0.067  Sum_probs=107.7

Q ss_pred             CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHcC-----------CCceeecccCCCCCCCCccceEEe
Q 037675          266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAARG-----------LFPLYLSLDHRFPFYDNVFDLVHA  332 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eRG-----------li~~~~~~~e~LPf~d~sFDlV~s  332 (418)
                      .+|||+|||+|.++..|++++  ..++  ++|+++.+++.++++-           -+.+..++...+++++++||+|++
T Consensus        31 ~~vLDiGcG~G~~~~~l~~~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  108 (219)
T 3jwg_A           31 KKVIDLGCGEGNLLSLLLKDKSFEQIT--GVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATV  108 (219)
T ss_dssp             CEEEEETCTTCHHHHHHHTSTTCCEEE--EEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEE
T ss_pred             CEEEEecCCCCHHHHHHHhcCCCCEEE--EEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEE
Confidence            589999999999999999875  4554  5899999999887751           235666778888888999999999


Q ss_pred             cCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc----------------------CchhHHHHHHHHHHHcCcEEE
Q 037675          333 SSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC----------------------ANDEKKSALTRLIERFGYKKL  390 (418)
Q Consensus       333 ~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~----------------------~~ee~~~~~~~l~~~~Gfk~l  390 (418)
                      ..+++++.++ .+..++.++.|+|||||++++.....                      ..++..+.+..++++.||+..
T Consensus       109 ~~~l~~~~~~-~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~  187 (219)
T 3jwg_A          109 IEVIEHLDEN-RLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVR  187 (219)
T ss_dssp             ESCGGGCCHH-HHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEE
T ss_pred             HHHHHhCCHH-HHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEE
Confidence            9999998543 45689999999999999776554311                      112233344588999999765


Q ss_pred             EEEEcccCCCCccceEEEEEEEcCC
Q 037675          391 KWVVGEKGETGKSEVYLSAVLQKPV  415 (418)
Q Consensus       391 ~W~~~~k~d~~~~e~~l~Ai~qKP~  415 (418)
                      .-.++... +..+...-.||+.|-.
T Consensus       188 ~~~~g~~~-~~~g~~~qi~~~~~~~  211 (219)
T 3jwg_A          188 FLQIGEID-DEFGSPTQMGVFTLGA  211 (219)
T ss_dssp             EEEESCCC-TTSCCSEEEEEEEECC
T ss_pred             EEecCCcc-ccCCCCeEEEEEeccC
Confidence            44444332 3445556688988854

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.64  E-value=1.5e-15  Score=140.71  Aligned_cols=123  Identities=15%  Similarity=0.239  Sum_probs=101.5

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC---CceeecccCCCCCCCCccceEEecCcCcCCCCh
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL---FPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQP  342 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~  342 (418)
                      .+|||+|||+|.++..|++++..++  ++|+++.+++.++++..   +.++.++...+|+++++||+|++..+++|..++
T Consensus        55 ~~vLDiG~G~G~~~~~l~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~  132 (242)
T 3l8d_A           55 AEVLDVGCGDGYGTYKLSRTGYKAV--GVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEP  132 (242)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEE--EEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSCH
T ss_pred             CeEEEEcCCCCHHHHHHHHcCCeEE--EEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhccCH
Confidence            4999999999999999999987765  58999999999988732   345567888999999999999999999998765


Q ss_pred             hHHHHHHHHhhccccCCcEEEEEecccCch------------------hHHHHHHHHHHHcCcEEEEEE
Q 037675          343 EKLEFLMFDFDRILRAGGLFWLDNFYCAND------------------EKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       343 ~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e------------------e~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      .   .++.++.|+|||||++++..+.....                  ...+.+..+++..||+.+...
T Consensus       133 ~---~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  198 (242)
T 3l8d_A          133 L---RALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI  198 (242)
T ss_dssp             H---HHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             H---HHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence            4   89999999999999999987522110                  113568899999999988744

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.64  E-value=1.5e-15  Score=145.88  Aligned_cols=129  Identities=17%  Similarity=0.245  Sum_probs=102.9

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceE
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLV  330 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV  330 (418)
                      .+.++  .+|||+|||+|.++..|+++ +..++  ++|+++.|++.++++    |+   +.+..++.+.+|+++++||+|
T Consensus        79 ~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  154 (297)
T 2o57_A           79 VLQRQ--AKGLDLGAGYGGAARFLVRKFGVSID--CLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFI  154 (297)
T ss_dssp             CCCTT--CEEEEETCTTSHHHHHHHHHHCCEEE--EEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred             CCCCC--CEEEEeCCCCCHHHHHHHHHhCCEEE--EEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEE
Confidence            44444  58999999999999999987 77664  589999999887664    43   355667888999999999999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc----hh--------------HHHHHHHHHHHcCcEEEEE
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN----DE--------------KKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~----ee--------------~~~~~~~l~~~~Gfk~l~W  392 (418)
                      ++..+++|+.++.   .+|.|+.|+|||||++++.++....    ..              ..+.+..+++..||+.+..
T Consensus       155 ~~~~~l~~~~~~~---~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  231 (297)
T 2o57_A          155 WSQDAFLHSPDKL---KVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRT  231 (297)
T ss_dssp             EEESCGGGCSCHH---HHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred             EecchhhhcCCHH---HHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEE
Confidence            9999999997754   8999999999999999998763221    00              1346788999999998875


Q ss_pred             EE
Q 037675          393 VV  394 (418)
Q Consensus       393 ~~  394 (418)
                      ..
T Consensus       232 ~~  233 (297)
T 2o57_A          232 FS  233 (297)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.64  E-value=1.1e-15  Score=143.43  Aligned_cols=124  Identities=11%  Similarity=0.104  Sum_probs=101.0

Q ss_pred             CCeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHcC---CCceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675          265 IRIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAARG---LFPLYLSLDHRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eRG---li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      ..+|||+|||+|.++..|++++. .++  ++|+++.+++.++++.   -+.+..++.+.+|+++++||+|++..+++++.
T Consensus        45 ~~~vLD~GcG~G~~~~~l~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  122 (253)
T 3g5l_A           45 QKTVLDLGCGFGWHCIYAAEHGAKKVL--GIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA  122 (253)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEE--EEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred             CCEEEEECCCCCHHHHHHHHcCCCEEE--EEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhh
Confidence            45899999999999999999976 554  5899999999998874   23556678889999999999999999999996


Q ss_pred             ChhHHHHHHHHhhccccCCcEEEEEecccC-----------c---h----------------------------hHHHHH
Q 037675          341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCA-----------N---D----------------------------EKKSAL  378 (418)
Q Consensus       341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-----------~---e----------------------------e~~~~~  378 (418)
                      +..   .+|.++.|+|||||++++..+...           .   .                            ...+.+
T Consensus       123 ~~~---~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  199 (253)
T 3g5l_A          123 SFD---DICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTY  199 (253)
T ss_dssp             CHH---HHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHH
T ss_pred             hHH---HHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHH
Confidence            554   899999999999999998743100           0   0                            034679


Q ss_pred             HHHHHHcCcEEEEEE
Q 037675          379 TRLIERFGYKKLKWV  393 (418)
Q Consensus       379 ~~l~~~~Gfk~l~W~  393 (418)
                      ..+++++||+.+...
T Consensus       200 ~~~l~~aGF~~~~~~  214 (253)
T 3g5l_A          200 IQTLLKNGFQINSVI  214 (253)
T ss_dssp             HHHHHHTTEEEEEEE
T ss_pred             HHHHHHcCCeeeeee
Confidence            999999999988765

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.64  E-value=1.6e-15  Score=145.12  Aligned_cols=158  Identities=14%  Similarity=0.135  Sum_probs=116.2

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----C------CceeecccCCCC-
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----L------FPLYLSLDHRFP-  321 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----l------i~~~~~~~e~LP-  321 (418)
                      .+.+.+...++  .+|||+|||+|.++..|++.+..++  ++|+++.|++.++++.    .      +.+..++...+| 
T Consensus        48 ~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~--gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~  123 (293)
T 3thr_A           48 WLLGLLRQHGC--HRVLDVACGTGVDSIMLVEEGFSVT--SVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK  123 (293)
T ss_dssp             HHHHHHHHTTC--CEEEETTCTTSHHHHHHHHTTCEEE--EEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred             HHHHHhcccCC--CEEEEecCCCCHHHHHHHHCCCeEE--EEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc
Confidence            44444444443  5899999999999999999988665  5899999999887641    1      123456677777 


Q ss_pred             --CCCCccceEEec-CcCcCCCC----hhHHHHHHHHhhccccCCcEEEEEeccc--------C---------c------
Q 037675          322 --FYDNVFDLVHAS-SGLDVGGQ----PEKLEFLMFDFDRILRAGGLFWLDNFYC--------A---------N------  371 (418)
Q Consensus       322 --f~d~sFDlV~s~-~~L~~~~~----~~~le~~L~Ei~RVLRPGG~~ii~~~~~--------~---------~------  371 (418)
                        +++++||+|+|. .+++|+.+    ......++.++.|+|||||++++..+..        .         .      
T Consensus       124 ~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  203 (293)
T 3thr_A          124 DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDI  203 (293)
T ss_dssp             HSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHTCCCSSCCSSBCCCSCEEE
T ss_pred             ccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHHhhcCCCCCccceeecccccccc
Confidence              889999999998 89999877    3446699999999999999998875310        0         0      


Q ss_pred             -----------------------------------------hhHHHHHHHHHHHc--CcEEEE-EEEcccC--CCCccce
Q 037675          372 -----------------------------------------DEKKSALTRLIERF--GYKKLK-WVVGEKG--ETGKSEV  405 (418)
Q Consensus       372 -----------------------------------------ee~~~~~~~l~~~~--Gfk~l~-W~~~~k~--d~~~~e~  405 (418)
                                                               +...+.+..+++++  ||+.+. |.--.+.  ....+..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~l~~af~GF~~v~~~gdf~~~~~~~~~~~~  283 (293)
T 3thr_A          204 TTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPC  283 (293)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEC------CCEEEEEEEEECCCCHHHHHHHHHHTTTTCEEEEEEETTEECCTTCSCCCS
T ss_pred             ccceEEEcCCccEEEEEEEEecCCccccCCCCcceeeeecCHHHHHHHHHHHHHHhcCCceEEEecccccCccCccCCCc
Confidence                                                     00124689999999  999987 5433333  2234566


Q ss_pred             EEEEEEEcC
Q 037675          406 YLSAVLQKP  414 (418)
Q Consensus       406 ~l~Ai~qKP  414 (418)
                      +++.|.+|+
T Consensus       284 ~~~~v~~k~  292 (293)
T 3thr_A          284 YFIHVLKKT  292 (293)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEeeC
Confidence            788899996

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.64  E-value=1.8e-15  Score=140.05  Aligned_cols=123  Identities=15%  Similarity=0.222  Sum_probs=98.0

Q ss_pred             CCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCCccceEEecCcCcC
Q 037675          265 IRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      ..+|||+|||+|.++..+++.  +..++  ++|+++.+++.++++-    -+.+..++.+.+|++ ++||+|++..++++
T Consensus        45 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~  121 (234)
T 3dtn_A           45 NPDILDLGAGTGLLSAFLMEKYPEATFT--LVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIHH  121 (234)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHCTTCEEE--EEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGGG
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCeEE--EEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCcccc
Confidence            369999999999999999988  56664  5899999999988862    235566788888887 99999999999999


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEecccCch-----------------------h--------------HHHHHHHH
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND-----------------------E--------------KKSALTRL  381 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e-----------------------e--------------~~~~~~~l  381 (418)
                      +.+. ....++.++.|+|||||++++.++.....                       +              ..+++..+
T Consensus       122 ~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  200 (234)
T 3dtn_A          122 LEDE-DKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNW  200 (234)
T ss_dssp             SCHH-HHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHH
T ss_pred             CCHH-HHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHH
Confidence            8543 34469999999999999999987532210                       0              12457779


Q ss_pred             HHHcCcEEEE
Q 037675          382 IERFGYKKLK  391 (418)
Q Consensus       382 ~~~~Gfk~l~  391 (418)
                      ++++||+.++
T Consensus       201 l~~aGF~~v~  210 (234)
T 3dtn_A          201 LKEAGFRDVS  210 (234)
T ss_dssp             HHHTTCEEEE
T ss_pred             HHHcCCCcee
Confidence            9999999886

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.63  E-value=2.9e-15  Score=141.74  Aligned_cols=125  Identities=23%  Similarity=0.265  Sum_probs=101.0

Q ss_pred             CeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++..++++ +..++  ++|+++.+++.++++    |+   +.+..++.+.+|+++++||+|++..+++
T Consensus        63 ~~vLDiGcG~G~~~~~l~~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  140 (273)
T 3bus_A           63 DRVLDVGCGIGKPAVRLATARDVRVT--GISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLH  140 (273)
T ss_dssp             CEEEEESCTTSHHHHHHHHHSCCEEE--EEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTT
T ss_pred             CEEEEeCCCCCHHHHHHHHhcCCEEE--EEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhh
Confidence            59999999999999999875 66664  479999999887664    43   3556678889999999999999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccCc---h------------------hHHHHHHHHHHHcCcEEEEEEEc
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN---D------------------EKKSALTRLIERFGYKKLKWVVG  395 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~---e------------------e~~~~~~~l~~~~Gfk~l~W~~~  395 (418)
                      |..++.   .+|.++.|+|||||++++.++....   .                  ...+.+..++++.||+.+.+...
T Consensus       141 ~~~~~~---~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  216 (273)
T 3bus_A          141 HMPDRG---RALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDI  216 (273)
T ss_dssp             TSSCHH---HHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             hCCCHH---HHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEEC
Confidence            997654   8999999999999999998764321   0                  01256888999999999876653

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.63  E-value=4e-15  Score=140.98  Aligned_cols=139  Identities=17%  Similarity=0.189  Sum_probs=105.6

Q ss_pred             cHHHHHHHHccCC--CCCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHc----CC---CceeecccCC
Q 037675          250 NDFLIDDVLALGS--GGIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHR  319 (418)
Q Consensus       250 y~~~I~~lL~l~~--g~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~  319 (418)
                      +...+..++.+-.  ....+|||+|||+|.++..+++.+ ..++  ++|+++.+++.++++    |+   +.+..++.+.
T Consensus        30 ~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  107 (267)
T 3kkz_A           30 SPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVT--GLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDD  107 (267)
T ss_dssp             CHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEE--EEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             CHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEE--EEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhh
Confidence            4444444444321  233599999999999999999984 4654  589999999887664    43   3556678899


Q ss_pred             CCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc----hh-------------HHHHHHHHH
Q 037675          320 FPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN----DE-------------KKSALTRLI  382 (418)
Q Consensus       320 LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~----ee-------------~~~~~~~l~  382 (418)
                      +|+++++||+|++..++++. +.   ..++.++.|+|||||++++.++.+..    ..             ..+.+..++
T Consensus       108 ~~~~~~~fD~i~~~~~~~~~-~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  183 (267)
T 3kkz_A          108 LPFRNEELDLIWSEGAIYNI-GF---ERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKI  183 (267)
T ss_dssp             CCCCTTCEEEEEESSCGGGT-CH---HHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHH
T ss_pred             CCCCCCCEEEEEEcCCceec-CH---HHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHH
Confidence            99999999999999999988 44   48999999999999999998764221    11             124678899


Q ss_pred             HHcCcEEEEEEE
Q 037675          383 ERFGYKKLKWVV  394 (418)
Q Consensus       383 ~~~Gfk~l~W~~  394 (418)
                      ++.||+.+....
T Consensus       184 ~~aGf~~v~~~~  195 (267)
T 3kkz_A          184 HKAGYLPVATFI  195 (267)
T ss_dssp             HHTTEEEEEEEE
T ss_pred             HHCCCEEEEEEE
Confidence            999999987654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.63  E-value=8.8e-16  Score=141.24  Aligned_cols=132  Identities=8%  Similarity=-0.033  Sum_probs=98.9

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC------------------CCceeecccCCC
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG------------------LFPLYLSLDHRF  320 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG------------------li~~~~~~~e~L  320 (418)
                      .+.++  .+|||+|||+|.++..|+++|..|+  ++|+|+.|++.|+++.                  -+.++.++...+
T Consensus        19 ~~~~~--~~vLD~GCG~G~~~~~la~~g~~V~--gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l   94 (203)
T 1pjz_A           19 NVVPG--ARVLVPLCGKSQDMSWLSGQGYHVV--GAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   94 (203)
T ss_dssp             CCCTT--CEEEETTTCCSHHHHHHHHHCCEEE--EEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             ccCCC--CEEEEeCCCCcHhHHHHHHCCCeEE--EEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence            34444  4899999999999999999988775  5899999999988761                  235566888999


Q ss_pred             CCCC-CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe-cccC----ch---hHHHHHHHHHHHcCcEEEE
Q 037675          321 PFYD-NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN-FYCA----ND---EKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       321 Pf~d-~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~-~~~~----~e---e~~~~~~~l~~~~Gfk~l~  391 (418)
                      |+++ ++||+|++..++++.. ....+.++.|+.|+|||||++++.. .+..    +.   -..+++..+++. ||+.+.
T Consensus        95 ~~~~~~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~  172 (203)
T 1pjz_A           95 TARDIGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTK  172 (203)
T ss_dssp             THHHHHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEE
T ss_pred             CcccCCCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEE
Confidence            9876 8999999999998875 3455679999999999999843332 2211    10   123567778877 998776


Q ss_pred             EEEcc
Q 037675          392 WVVGE  396 (418)
Q Consensus       392 W~~~~  396 (418)
                      .....
T Consensus       173 ~~~~~  177 (203)
T 1pjz_A          173 VGGQD  177 (203)
T ss_dssp             EEESS
T ss_pred             ecccc
Confidence            65533

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.62  E-value=3.3e-15  Score=142.65  Aligned_cols=131  Identities=18%  Similarity=0.250  Sum_probs=103.0

Q ss_pred             HHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC-CCceeecccCCCCCCCCccceEEecC
Q 037675          256 DVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG-LFPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       256 ~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG-li~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      +.+.+.++  .+|||+|||+|.++..|++.+..++  ++|+++.|++.++++. -+.+..++.+.+|+ +++||+|++..
T Consensus        51 ~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~  125 (279)
T 3ccf_A           51 QLLNPQPG--EFILDLGCGTGQLTEKIAQSGAEVL--GTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNA  125 (279)
T ss_dssp             HHHCCCTT--CEEEEETCTTSHHHHHHHHTTCEEE--EEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEES
T ss_pred             HHhCCCCC--CEEEEecCCCCHHHHHHHhCCCeEE--EEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcc
Confidence            34445444  5899999999999999999877665  4899999999998873 23667788888997 68999999999


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-hh--------------------------HHHHHHHHHHHcCc
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-DE--------------------------KKSALTRLIERFGY  387 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-ee--------------------------~~~~~~~l~~~~Gf  387 (418)
                      ++++..++.   .++.|+.|+|||||++++..+.... ..                          ..+.+..++++.||
T Consensus       126 ~l~~~~d~~---~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  202 (279)
T 3ccf_A          126 MLHWVKEPE---AAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGF  202 (279)
T ss_dssp             CGGGCSCHH---HHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTE
T ss_pred             hhhhCcCHH---HHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCC
Confidence            999987654   8999999999999999887653211 00                          13457889999999


Q ss_pred             EEEEEEE
Q 037675          388 KKLKWVV  394 (418)
Q Consensus       388 k~l~W~~  394 (418)
                      +.+.+..
T Consensus       203 ~~~~~~~  209 (279)
T 3ccf_A          203 DVTYAAL  209 (279)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9877543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.62  E-value=2.8e-15  Score=143.44  Aligned_cols=125  Identities=20%  Similarity=0.269  Sum_probs=101.4

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCC-CCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFP-FYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LP-f~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++..|++.+..++  ++|+++.+++.++++    |+   +.++.++.+.++ +++++||+|++..+++
T Consensus        70 ~~vLDiGcG~G~~~~~l~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~  147 (285)
T 4htf_A           70 LRVLDAGGGEGQTAIKMAERGHQVI--LCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLE  147 (285)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCEEE--EEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGG
T ss_pred             CEEEEeCCcchHHHHHHHHCCCEEE--EEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhh
Confidence            5899999999999999999987765  589999999988775    33   345667888887 8899999999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccCc------------------------------hhHHHHHHHHHHHcCc
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN------------------------------DEKKSALTRLIERFGY  387 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~------------------------------ee~~~~~~~l~~~~Gf  387 (418)
                      ++.++.   .+|.++.|+|||||++++..+....                              .-..+++..++++.||
T Consensus       148 ~~~~~~---~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf  224 (285)
T 4htf_A          148 WVADPR---SVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGW  224 (285)
T ss_dssp             GCSCHH---HHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTC
T ss_pred             cccCHH---HHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCC
Confidence            997664   8999999999999999987752110                              0113568999999999


Q ss_pred             EEEEEEEc
Q 037675          388 KKLKWVVG  395 (418)
Q Consensus       388 k~l~W~~~  395 (418)
                      +.+.+...
T Consensus       225 ~v~~~~~~  232 (285)
T 4htf_A          225 QIMGKTGV  232 (285)
T ss_dssp             EEEEEEEE
T ss_pred             ceeeeeeE
Confidence            98876553

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.62  E-value=1.2e-15  Score=142.36  Aligned_cols=124  Identities=18%  Similarity=0.216  Sum_probs=101.2

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC--CCCCCccceEEecCcCcCCCChh
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF--PFYDNVFDLVHASSGLDVGGQPE  343 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L--Pf~d~sFDlV~s~~~L~~~~~~~  343 (418)
                      .+|||+|||+|.++..|++++..++  ++|+++.+++.++++  +.+..++...+  |+++++||+|++..+++|+.++ 
T Consensus        43 ~~vLDiGcG~G~~~~~l~~~~~~v~--gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~-  117 (240)
T 3dli_A           43 RRVLDIGCGRGEFLELCKEEGIESI--GVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPE-  117 (240)
T ss_dssp             SCEEEETCTTTHHHHHHHHHTCCEE--EECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGG-
T ss_pred             CeEEEEeCCCCHHHHHHHhCCCcEE--EEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcH-
Confidence            5899999999999999999887764  589999999999888  46666666654  8899999999999999998643 


Q ss_pred             HHHHHHHHhhccccCCcEEEEEecccCch---------------hHHHHHHHHHHHcCcEEEEEEE
Q 037675          344 KLEFLMFDFDRILRAGGLFWLDNFYCAND---------------EKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       344 ~le~~L~Ei~RVLRPGG~~ii~~~~~~~e---------------e~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      ++..++.++.|+|||||++++..+.....               -..+.+..++++.||+.+....
T Consensus       118 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~  183 (240)
T 3dli_A          118 RLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEF  183 (240)
T ss_dssp             GHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEE
Confidence            45699999999999999999987633210               1135688999999999887543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.62  E-value=2e-15  Score=144.00  Aligned_cols=149  Identities=12%  Similarity=0.078  Sum_probs=105.0

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC-----C------------------------------C
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG-----L------------------------------F  310 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG-----l------------------------------i  310 (418)
                      .+|||||||+|.++..++..++.-| +++|+|+.|++.|+++-     .                              +
T Consensus        57 ~~vLDiGCG~G~~~~~~~~~~~~~v-~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i  135 (263)
T 2a14_A           57 DTLIDIGSGPTIYQVLAACDSFQDI-TLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAV  135 (263)
T ss_dssp             EEEEESSCTTCCGGGTTGGGTEEEE-EEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHE
T ss_pred             ceEEEeCCCccHHHHHHHHhhhcce-eeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhh
Confidence            4899999999999888888886433 46899999999876530     0                              0


Q ss_pred             -ceeecccCC-CCCC---CCccceEEecCcCcCC-CChhHHHHHHHHhhccccCCcEEEEEecccC-----ch-------
Q 037675          311 -PLYLSLDHR-FPFY---DNVFDLVHASSGLDVG-GQPEKLEFLMFDFDRILRAGGLFWLDNFYCA-----ND-------  372 (418)
Q Consensus       311 -~~~~~~~e~-LPf~---d~sFDlV~s~~~L~~~-~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-----~e-------  372 (418)
                       .+..++... .|++   +++||+|+++.+||+. .+..++..++.++.|+|||||+|++++....     +.       
T Consensus       136 ~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~  215 (263)
T 2a14_A          136 KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVA  215 (263)
T ss_dssp             EEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCC
T ss_pred             heEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccc
Confidence             133444444 3543   6799999999999974 4456677999999999999999999864211     10       


Q ss_pred             hHHHHHHHHHHHcCcEEEEEEEccc-CCC--CccceEEEEEEEcCC
Q 037675          373 EKKSALTRLIERFGYKKLKWVVGEK-GET--GKSEVYLSAVLQKPV  415 (418)
Q Consensus       373 e~~~~~~~l~~~~Gfk~l~W~~~~k-~d~--~~~e~~l~Ai~qKP~  415 (418)
                      -..+++..+++..||+.+.+..... ...  ...+.++..+.+|+.
T Consensus       216 ~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~~  261 (263)
T 2a14_A          216 LEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP  261 (263)
T ss_dssp             CCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred             cCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEecC
Confidence            1245689999999999988655321 111  112356667888974

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.62  E-value=4.1e-15  Score=131.02  Aligned_cols=123  Identities=12%  Similarity=0.134  Sum_probs=95.8

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC-CCceeecccCCCCCCCCccceEEecCcCc
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG-LFPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG-li~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+.++  .+|||+|||+|.++..+++.+..+  .++|+++.+++.++++. -+.+..++   +|+++++||+|++..+++
T Consensus        14 ~~~~~--~~vLDiG~G~G~~~~~l~~~~~~v--~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~   86 (170)
T 3i9f_A           14 FEGKK--GVIVDYGCGNGFYCKYLLEFATKL--YCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFH   86 (170)
T ss_dssp             HSSCC--EEEEEETCTTCTTHHHHHTTEEEE--EEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCST
T ss_pred             CcCCC--CeEEEECCCCCHHHHHHHhhcCeE--EEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchh
Confidence            45544  489999999999999999986444  35899999999998872 22344444   888999999999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccCch---------hHHHHHHHHHHHcCcEEEEEE
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND---------EKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e---------e~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      ++.++.   .++.++.|+|||||++++.++.....         -..+++..+++  ||+.++..
T Consensus        87 ~~~~~~---~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~  146 (170)
T 3i9f_A           87 DMDDKQ---HVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRF  146 (170)
T ss_dssp             TCSCHH---HHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEE
T ss_pred             cccCHH---HHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEcc
Confidence            986654   89999999999999999987643211         12356777777  99988653

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.62  E-value=9.7e-15  Score=136.69  Aligned_cols=138  Identities=16%  Similarity=0.176  Sum_probs=104.6

Q ss_pred             CcHHHHHHHHc----cCCCCCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHc----CC---Cceeecc
Q 037675          249 KNDFLIDDVLA----LGSGGIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAAR----GL---FPLYLSL  316 (418)
Q Consensus       249 ~y~~~I~~lL~----l~~g~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~  316 (418)
                      ++...+..++.    +.++  .+|||+|||+|.++..+++.+ ..++  ++|+++.+++.++++    |+   +.+..++
T Consensus        29 ~~~~~~~~~l~~l~~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d  104 (257)
T 3f4k_A           29 GSPEATRKAVSFINELTDD--AKIADIGCGTGGQTLFLADYVKGQIT--GIDLFPDFIEIFNENAVKANCADRVKGITGS  104 (257)
T ss_dssp             CCHHHHHHHHTTSCCCCTT--CEEEEETCTTSHHHHHHHHHCCSEEE--EEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             CCHHHHHHHHHHHhcCCCC--CeEEEeCCCCCHHHHHHHHhCCCeEE--EEECCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence            34444444444    2333  489999999999999999884 3554  589999999877654    43   3456678


Q ss_pred             cCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc----hh-------------HHHHHH
Q 037675          317 DHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN----DE-------------KKSALT  379 (418)
Q Consensus       317 ~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~----ee-------------~~~~~~  379 (418)
                      .+.+|+++++||+|++..++++. +.   +.++.++.|+|||||++++.++.+..    ..             ..+.+.
T Consensus       105 ~~~~~~~~~~fD~v~~~~~l~~~-~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (257)
T 3f4k_A          105 MDNLPFQNEELDLIWSEGAIYNI-GF---ERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCI  180 (257)
T ss_dssp             TTSCSSCTTCEEEEEEESCSCCC-CH---HHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHH
T ss_pred             hhhCCCCCCCEEEEEecChHhhc-CH---HHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHH
Confidence            89999999999999999999988 43   48999999999999999998864221    10             124678


Q ss_pred             HHHHHcCcEEEEEEE
Q 037675          380 RLIERFGYKKLKWVV  394 (418)
Q Consensus       380 ~l~~~~Gfk~l~W~~  394 (418)
                      .+++..||+.+....
T Consensus       181 ~~l~~aGf~~v~~~~  195 (257)
T 3f4k_A          181 DKMERAGYTPTAHFI  195 (257)
T ss_dssp             HHHHHTTEEEEEEEE
T ss_pred             HHHHHCCCeEEEEEE
Confidence            899999999887443

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.61  E-value=8.6e-15  Score=132.66  Aligned_cols=161  Identities=11%  Similarity=0.075  Sum_probs=112.5

Q ss_pred             cHHHHHHHHccCCCCCCeEEEECCccChH-HHHHhhcCcEEEEeccCCCHHhHHHHHHc----C-CCceeecccCCCCCC
Q 037675          250 NDFLIDDVLALGSGGIRIGFDIGGGSGTF-AARMAERNVTVITNTLNVDAPYSEFIAAR----G-LFPLYLSLDHRFPFY  323 (418)
Q Consensus       250 y~~~I~~lL~l~~g~~r~VLDvGCGtG~f-aa~La~~gV~vv~~alD~s~~~l~~a~eR----G-li~~~~~~~e~LPf~  323 (418)
                      +...+..+..+.++  .+|||+|||+|.+ ...+++.+..++  ++|+++.+++.++++    + -+.+..++...+|++
T Consensus        11 ~~~~~~~~~~~~~~--~~vLDiGcG~G~~~~~~~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~   86 (209)
T 2p8j_A           11 LYRFLKYCNESNLD--KTVLDCGAGGDLPPLSIFVEDGYKTY--GIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFK   86 (209)
T ss_dssp             HHHHHHHHHHSSSC--SEEEEESCCSSSCTHHHHHHTTCEEE--EEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSC
T ss_pred             HHHHHHHHhccCCC--CEEEEECCCCCHHHHHHHHhCCCEEE--EEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCC
Confidence            33344433334444  5899999999997 456666777664  589999999887664    2 245667788889999


Q ss_pred             CCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc--------------------------hhHHHH
Q 037675          324 DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN--------------------------DEKKSA  377 (418)
Q Consensus       324 d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--------------------------ee~~~~  377 (418)
                      +++||+|++..+++|+. ..+...++.++.|+|||||++++.++....                          --..++
T Consensus        87 ~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  165 (209)
T 2p8j_A           87 DESMSFVYSYGTIFHMR-KNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEE  165 (209)
T ss_dssp             TTCEEEEEECSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHH
T ss_pred             CCceeEEEEcChHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHH
Confidence            99999999999999884 456779999999999999999988752110                          001356


Q ss_pred             HHHHHHHcCcEEEEEEEcccCCCC--ccceEEEEEEEcCC
Q 037675          378 LTRLIERFGYKKLKWVVGEKGETG--KSEVYLSAVLQKPV  415 (418)
Q Consensus       378 ~~~l~~~~Gfk~l~W~~~~k~d~~--~~e~~l~Ai~qKP~  415 (418)
                      +..+++.+||....-....+.+.+  ....|...+.+|-.
T Consensus       166 ~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~  205 (209)
T 2p8j_A          166 ADKYFKDMKVLFKEDRVVERINDGLKIKQGYVDYIAEKFS  205 (209)
T ss_dssp             HHHTTTTSEEEEEEEEEEEEEETTEEEEEEEEEEEEECCC
T ss_pred             HHHHHhhcCceeeeeeeeehhhcCCcccceeeeeehhhhh
Confidence            888888888876653332321111  23567777887743

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.61  E-value=4.5e-15  Score=143.30  Aligned_cols=97  Identities=18%  Similarity=0.174  Sum_probs=80.2

Q ss_pred             eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc---------CCCceeecccCCCCCCCCccceEEec-CcC
Q 037675          267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR---------GLFPLYLSLDHRFPFYDNVFDLVHAS-SGL  336 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR---------Gli~~~~~~~e~LPf~d~sFDlV~s~-~~L  336 (418)
                      +|||+|||+|.++..|++++..++  ++|+++.+++.++++         .-+.++.++...+|+ +++||+|++. .++
T Consensus        85 ~vLDlGcG~G~~~~~l~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~  161 (299)
T 3g2m_A           85 PVLELAAGMGRLTFPFLDLGWEVT--ALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSI  161 (299)
T ss_dssp             CEEEETCTTTTTHHHHHTTTCCEE--EEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHH
T ss_pred             cEEEEeccCCHHHHHHHHcCCeEE--EEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCccc
Confidence            899999999999999999987664  479999999988765         223566788888988 8899999976 445


Q ss_pred             cCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ++. ++.+...+|.++.|+|||||+|++..+
T Consensus       162 ~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~  191 (299)
T 3g2m_A          162 NEL-DEADRRGLYASVREHLEPGGKFLLSLA  191 (299)
T ss_dssp             TTS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccC-CHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence            544 555677999999999999999999765

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.61  E-value=5.3e-15  Score=134.40  Aligned_cols=130  Identities=14%  Similarity=0.080  Sum_probs=103.3

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC--CceeecccCCCCCCCCccceEEecCcCc
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL--FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl--i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      +.++  .+|||+|||+|.++..|++++..++  ++|+++.+++.+++.+.  +.+..++.+.+ +++++||+|++..+++
T Consensus        44 ~~~~--~~vLdiG~G~G~~~~~l~~~~~~v~--~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~  118 (218)
T 3ou2_A           44 GNIR--GDVLELASGTGYWTRHLSGLADRVT--ALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLA  118 (218)
T ss_dssp             TTSC--SEEEEESCTTSHHHHHHHHHSSEEE--EEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGG
T ss_pred             CCCC--CeEEEECCCCCHHHHHHHhcCCeEE--EEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhh
Confidence            4444  4899999999999999999887765  58999999999988774  24455777777 7899999999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccCc------------------------------hhHHHHHHHHHHHcCc
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN------------------------------DEKKSALTRLIERFGY  387 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~------------------------------ee~~~~~~~l~~~~Gf  387 (418)
                      +..++ .+..+|.++.|+|||||++++.++....                              ....+++..++++.||
T Consensus       119 ~~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  197 (218)
T 3ou2_A          119 HVPDD-RFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGW  197 (218)
T ss_dssp             GSCHH-HHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTE
T ss_pred             cCCHH-HHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCC
Confidence            98653 3568999999999999999888652210                              0123568999999999


Q ss_pred             EEEEEEEc
Q 037675          388 KKLKWVVG  395 (418)
Q Consensus       388 k~l~W~~~  395 (418)
                      +...|...
T Consensus       198 ~v~~~~~~  205 (218)
T 3ou2_A          198 SCSVDEVH  205 (218)
T ss_dssp             EEEEEEEE
T ss_pred             EEEeeecc
Confidence            97767663

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.61  E-value=3e-15  Score=142.09  Aligned_cols=130  Identities=16%  Similarity=0.229  Sum_probs=101.6

Q ss_pred             HHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCc
Q 037675          256 DVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSG  335 (418)
Q Consensus       256 ~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~  335 (418)
                      +.+++.++  .+|||+|||+|.++..|++.+..++  ++|+++.|++.++++.-+.+..++.+.+|+++++||+|++..+
T Consensus        28 ~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  103 (261)
T 3ege_A           28 NLLNLPKG--SVIADIGAGTGGYSVALANQGLFVY--AVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILA  103 (261)
T ss_dssp             HHHCCCTT--CEEEEETCTTSHHHHHHHTTTCEEE--EECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESC
T ss_pred             HHhCCCCC--CEEEEEcCcccHHHHHHHhCCCEEE--EEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcch
Confidence            33444444  5999999999999999999887775  5899999999877765446667888999999999999999999


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc----------h----------hHHHHHHHHHHHcCcEEEEEEE
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN----------D----------EKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~----------e----------e~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      ++++.+..   .++.++.|+|| ||++++.++....          .          ...+.+. +++++||+.+....
T Consensus       104 l~~~~~~~---~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~  177 (261)
T 3ege_A          104 IHHFSHLE---KSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIP  177 (261)
T ss_dssp             GGGCSSHH---HHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEE
T ss_pred             HhhccCHH---HHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEE
Confidence            99996654   89999999999 9988776652110          0          0124567 99999998876544

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.61  E-value=2e-14  Score=127.52  Aligned_cols=145  Identities=14%  Similarity=0.076  Sum_probs=110.0

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccceEEec-CcCcCCCChh
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDLVHAS-SGLDVGGQPE  343 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~-~~L~~~~~~~  343 (418)
                      .+|||+|||+|.++..+++.+..++  ++|+++.+++.++++.. +.+..++...+++++++||+|++. .++++.. ..
T Consensus        48 ~~vLdiG~G~G~~~~~l~~~~~~v~--~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~-~~  124 (195)
T 3cgg_A           48 AKILDAGCGQGRIGGYLSKQGHDVL--GTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA-ED  124 (195)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTCEEE--EEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC-HH
T ss_pred             CeEEEECCCCCHHHHHHHHCCCcEE--EEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC-hH
Confidence            4899999999999999999887664  57999999999888642 356667888888889999999998 6777763 44


Q ss_pred             HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCC-CCccceEEEEEEEcC
Q 037675          344 KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGE-TGKSEVYLSAVLQKP  414 (418)
Q Consensus       344 ~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d-~~~~e~~l~Ai~qKP  414 (418)
                      ....++.++.|+|||||++++..+..... ..+.+..+++..||+.+......... ...+..++..+++|+
T Consensus       125 ~~~~~l~~~~~~l~~~G~l~~~~~~~~~~-~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~  195 (195)
T 3cgg_A          125 GREPALANIHRALGADGRAVIGFGAGRGW-VFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK  195 (195)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEETTSSC-CHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEeCCCCCc-CHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence            56789999999999999998876644321 23458888999999987643321111 123455677888886

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.61  E-value=3.7e-15  Score=145.21  Aligned_cols=124  Identities=15%  Similarity=0.095  Sum_probs=100.5

Q ss_pred             CCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCcC
Q 037675          265 IRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSGL  336 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~L  336 (418)
                      ..+|||+|||+|.++..|+++ +..++  ++|+++.+++.|+++    |+   +.+..++.+.+|+++++||+|++..++
T Consensus       118 ~~~vLDiGcG~G~~~~~la~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  195 (312)
T 3vc1_A          118 DDTLVDAGCGRGGSMVMAHRRFGSRVE--GVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNEST  195 (312)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCCEEE--EEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCG
T ss_pred             CCEEEEecCCCCHHHHHHHHHcCCEEE--EEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCch
Confidence            358999999999999999988 77765  589999999887664    43   355668889999999999999999999


Q ss_pred             cCCCChhHHHHHHHHhhccccCCcEEEEEecccCc------h---h----------HHHHHHHHHHHcCcEEEEEEE
Q 037675          337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN------D---E----------KKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~------e---e----------~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      +++.    ...+|.++.|+|||||++++.++....      .   .          ..+.+..++++.||+.+....
T Consensus       196 ~~~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~  268 (312)
T 3vc1_A          196 MYVD----LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVD  268 (312)
T ss_dssp             GGSC----HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEE
T ss_pred             hhCC----HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence            9983    348999999999999999988753221      0   0          135688999999999887654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.60  E-value=1.2e-14  Score=134.11  Aligned_cols=119  Identities=22%  Similarity=0.332  Sum_probs=99.1

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhHH
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKL  345 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~l  345 (418)
                      .+|||+|||+|.++..++++      +++|+++.+++.++++++ .+..++.+.+|+++++||+|++..++++..++.  
T Consensus        49 ~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~--  119 (219)
T 1vlm_A           49 GRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVDDPE--  119 (219)
T ss_dssp             SCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSSCHH--
T ss_pred             CcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhcCC-EEEEcccccCCCCCCCeeEEEEcchHhhccCHH--
Confidence            48999999999999999877      246999999999999865 677778888999999999999999999986654  


Q ss_pred             HHHHHHhhccccCCcEEEEEecccCch--------------------hHHHHHHHHHHHcCcEEEEEEE
Q 037675          346 EFLMFDFDRILRAGGLFWLDNFYCAND--------------------EKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       346 e~~L~Ei~RVLRPGG~~ii~~~~~~~e--------------------e~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                       .+|.++.|+|||||++++..+.....                    ...+.+..++++.||+.+....
T Consensus       120 -~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~  187 (219)
T 1vlm_A          120 -RALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ  187 (219)
T ss_dssp             -HHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             -HHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEec
Confidence             89999999999999999986532110                    1236789999999999887554

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.60  E-value=7.9e-15  Score=131.40  Aligned_cols=153  Identities=16%  Similarity=0.212  Sum_probs=107.0

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCcc
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVF  327 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sF  327 (418)
                      +.+.+...++  .+|||+|||+|.++..|++++..++  ++|+++.+++.++++    ++  +.+..++...+|+ +++|
T Consensus        24 l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~   98 (199)
T 2xvm_A           24 VLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGYDVD--AWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQY   98 (199)
T ss_dssp             HHHHTTTSCS--CEEEEETCTTSHHHHHHHHTTCEEE--EEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCE
T ss_pred             HHHHhhccCC--CeEEEEcCCCCHHHHHHHHCCCeEE--EEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCc
Confidence            3344454444  4999999999999999999987664  589999999877653    33  3455677888888 8999


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch----------hHHHHHHHHHHHcCcEEEEEEEcc-
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND----------EKKSALTRLIERFGYKKLKWVVGE-  396 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e----------e~~~~~~~l~~~~Gfk~l~W~~~~-  396 (418)
                      |+|++..++++.. +.....++.++.|+|||||++++.++.....          -..+++.++++.  |+.+.+.... 
T Consensus        99 D~v~~~~~l~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~~~~  175 (199)
T 2xvm_A           99 DFILSTVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNEDVG  175 (199)
T ss_dssp             EEEEEESCGGGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEECCEE
T ss_pred             eEEEEcchhhhCC-HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEecccce
Confidence            9999999999875 3456689999999999999987765432110          012346677766  8877654321 


Q ss_pred             ---cCC-CCc--cceEEEEEEEcC
Q 037675          397 ---KGE-TGK--SEVYLSAVLQKP  414 (418)
Q Consensus       397 ---k~d-~~~--~e~~l~Ai~qKP  414 (418)
                         ..+ .+.  ...+...+.+||
T Consensus       176 ~~~~~~~~g~~~~~~~~~~~arK~  199 (199)
T 2xvm_A          176 ELHRTDANGNRIKLRFATMLARKK  199 (199)
T ss_dssp             EEEEECTTSCEEEEEEEEEEEECC
T ss_pred             EEEeecCCCCeeeEEEEEEEEecC
Confidence               111 111  123567788887

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.60  E-value=3.1e-15  Score=141.99  Aligned_cols=123  Identities=16%  Similarity=0.256  Sum_probs=98.0

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++..++++  +..++  ++|+++.+++.++++    |+  +.+..++...+|+++++||+|++..+++
T Consensus        39 ~~vLDiG~G~G~~~~~l~~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  116 (276)
T 3mgg_A           39 AKVLEAGCGIGAQTVILAKNNPDAEIT--SIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLE  116 (276)
T ss_dssp             CEEEETTCTTSHHHHHHHHHCTTSEEE--EEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCGG
T ss_pred             CeEEEecCCCCHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechhh
Confidence            59999999999999999988  55654  589999999887764    43  3455678888999999999999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccC-------ch--------------------hHHHHHHHHHHHcCcEEE
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA-------ND--------------------EKKSALTRLIERFGYKKL  390 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-------~e--------------------e~~~~~~~l~~~~Gfk~l  390 (418)
                      ++.++.   .++.++.|+|||||++++.++...       ..                    .....+..++++.||+.+
T Consensus       117 ~~~~~~---~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v  193 (276)
T 3mgg_A          117 HLQSPE---EALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKI  193 (276)
T ss_dssp             GCSCHH---HHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEE
T ss_pred             hcCCHH---HHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeE
Confidence            997765   899999999999999998764210       00                    011357789999999988


Q ss_pred             EEE
Q 037675          391 KWV  393 (418)
Q Consensus       391 ~W~  393 (418)
                      ...
T Consensus       194 ~~~  196 (276)
T 3mgg_A          194 RVE  196 (276)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.60  E-value=6.4e-15  Score=136.29  Aligned_cols=135  Identities=18%  Similarity=0.147  Sum_probs=105.7

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHcCC---CceeecccCCCCCCCCccc
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAARGL---FPLYLSLDHRFPFYDNVFD  328 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eRGl---i~~~~~~~e~LPf~d~sFD  328 (418)
                      .+.++++..++  .+|||+|||+|.++..+++++. .++  ++|+++.+++.++++..   +.+..++...+|+++++||
T Consensus        34 ~l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD  109 (243)
T 3bkw_A           34 ALRAMLPEVGG--LRIVDLGCGFGWFCRWAHEHGASYVL--GLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFD  109 (243)
T ss_dssp             HHHHHSCCCTT--CEEEEETCTTCHHHHHHHHTTCSEEE--EEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEE
T ss_pred             HHHHhccccCC--CEEEEEcCcCCHHHHHHHHCCCCeEE--EEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCce
Confidence            35555444333  5899999999999999999886 654  58999999999988753   3455677888899899999


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC---------------------c---------h------
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA---------------------N---------D------  372 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~---------------------~---------e------  372 (418)
                      +|++..+++++.+..   .++.++.|+|||||++++..+...                     .         .      
T Consensus       110 ~v~~~~~l~~~~~~~---~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (243)
T 3bkw_A          110 LAYSSLALHYVEDVA---RLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKG  186 (243)
T ss_dssp             EEEEESCGGGCSCHH---HHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHS
T ss_pred             EEEEeccccccchHH---HHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCc
Confidence            999999999986544   899999999999999998763100                     0         0      


Q ss_pred             -----hHHHHHHHHHHHcCcEEEEEEE
Q 037675          373 -----EKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       373 -----e~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                           ...+++..+++++||+.+.+..
T Consensus       187 ~~~~~~t~~~~~~~l~~aGF~~~~~~~  213 (243)
T 3bkw_A          187 VVKHHRTVGTTLNALIRSGFAIEHVEE  213 (243)
T ss_dssp             CCEEECCHHHHHHHHHHTTCEEEEEEE
T ss_pred             eEEEeccHHHHHHHHHHcCCEeeeecc
Confidence                 0246789999999999988654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.60  E-value=8.4e-15  Score=136.76  Aligned_cols=128  Identities=13%  Similarity=0.086  Sum_probs=101.5

Q ss_pred             CCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHcCC------CceeecccCCCCCCCCccceEEecCcCc
Q 037675          265 IRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAARGL------FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eRGl------i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      ..+|||+|||+|.++..|++++ ..++  ++|+++.+++.++++..      +.+..++...+++++++||+|++..+++
T Consensus        80 ~~~vLDiGcG~G~~~~~l~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  157 (241)
T 2ex4_A           80 TSCALDCGAGIGRITKRLLLPLFREVD--MVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  157 (241)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTCSEEE--EEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCEEEEECCCCCHHHHHHHHhcCCEEE--EEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence            4599999999999999999885 3443  58999999999887642      2345567888898888999999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccCc-----------hhHHHHHHHHHHHcCcEEEEEEEc
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-----------DEKKSALTRLIERFGYKKLKWVVG  395 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-----------ee~~~~~~~l~~~~Gfk~l~W~~~  395 (418)
                      ++.++ .+..++.++.|+|||||++++.++....           ....+.+..++++.||+.+++...
T Consensus       158 ~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  225 (241)
T 2ex4_A          158 HLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ  225 (241)
T ss_dssp             GSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hCCHH-HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence            98653 3568999999999999999997763221           012456899999999999886553

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.59  E-value=3.3e-14  Score=128.54  Aligned_cols=144  Identities=15%  Similarity=0.054  Sum_probs=103.7

Q ss_pred             eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675          267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ  341 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~  341 (418)
                      +|||+|||+|.++..|++.+..++  ++|+++.+++.++++    +. +.+..++...+|+++++||+|++..  .++ .
T Consensus        32 ~vLdiGcG~G~~~~~l~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~-~  106 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASLGYEVT--AVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHL-P  106 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTTTCEEE--EECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCC-C
T ss_pred             CEEEECCCCCHhHHHHHhCCCeEE--EEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcC-C
Confidence            899999999999999999887664  589999999887765    33 3455678888899899999999953  344 4


Q ss_pred             hhHHHHHHHHhhccccCCcEEEEEecccCch-------------hHHHHHHHHHHHcCcEEEEEEEccc-CCCCc----c
Q 037675          342 PEKLEFLMFDFDRILRAGGLFWLDNFYCAND-------------EKKSALTRLIERFGYKKLKWVVGEK-GETGK----S  403 (418)
Q Consensus       342 ~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e-------------e~~~~~~~l~~~~Gfk~l~W~~~~k-~d~~~----~  403 (418)
                      ..+...++.++.|+|||||++++..+.....             -..+++..+++  ||+.+....... ...+.    -
T Consensus       107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~~~~~~g~~~~~~  184 (202)
T 2kw5_A          107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNLERNLDEGAYHQGK  184 (202)
T ss_dssp             HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEEEECSCSSSSCCE
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEEEeecCCCCCcccH
Confidence            4567799999999999999999987632110             12356778877  999887554332 11111    2


Q ss_pred             ceEEEEEEEcCCCC
Q 037675          404 EVYLSAVLQKPVRV  417 (418)
Q Consensus       404 e~~l~Ai~qKP~~~  417 (418)
                      ..++....+|+..+
T Consensus       185 ~~~i~~~~~~~~~~  198 (202)
T 2kw5_A          185 AALIQLLGQKLEHH  198 (202)
T ss_dssp             EEEEEEEECCCSSC
T ss_pred             HHHHHHHHHhhhhc
Confidence            45555666666543

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.59  E-value=1.7e-14  Score=134.02  Aligned_cols=127  Identities=14%  Similarity=0.102  Sum_probs=100.0

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-------CceeecccCCCCCCCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-------FPLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-------i~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      .+|||+|||+|.++..|++.+..++  ++|+++.+++.++++.-       +.+..++...++ ++++||+|++..++++
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~  144 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASPERFVV--GLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCA  144 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBTTEEEE--EECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTT
T ss_pred             CCEEEeCCCCCHHHHHHHhCCCeEE--EEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhc
Confidence            4899999999999999998887764  58999999998877532       345567777776 5669999999999998


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEecccCc-------hhHHHHHHHHHHHcCcEEEEEEEcc
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-------DEKKSALTRLIERFGYKKLKWVVGE  396 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-------ee~~~~~~~l~~~~Gfk~l~W~~~~  396 (418)
                      +. +++...++.++.|+|||||++++..+....       ....+.+..+++..||+.+......
T Consensus       145 ~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  208 (235)
T 3lcc_A          145 IE-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENP  208 (235)
T ss_dssp             SC-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECT
T ss_pred             CC-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecC
Confidence            85 345669999999999999999887653211       1124568999999999998766544

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.59  E-value=2e-14  Score=131.05  Aligned_cols=124  Identities=17%  Similarity=0.130  Sum_probs=100.5

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCC--CCCCCCccceEEecCcCcCCCCh
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHR--FPFYDNVFDLVHASSGLDVGGQP  342 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~--LPf~d~sFDlV~s~~~L~~~~~~  342 (418)
                      ..+|||+|||+|.++..+++.+..++  ++|+++.+++.++++.. .+..++.+.  +|+++++||+|++..++++..++
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~~~~~~--~~D~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~  109 (230)
T 3cc8_A           33 WKEVLDIGCSSGALGAAIKENGTRVS--GIEAFPEAAEQAKEKLD-HVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDP  109 (230)
T ss_dssp             CSEEEEETCTTSHHHHHHHTTTCEEE--EEESSHHHHHHHHTTSS-EEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCH
T ss_pred             CCcEEEeCCCCCHHHHHHHhcCCeEE--EEeCCHHHHHHHHHhCC-cEEEcchhhcCCCCCCCccCEEEECChhhhcCCH
Confidence            45999999999999999998876554  58999999999888754 566666655  77888999999999999998766


Q ss_pred             hHHHHHHHHhhccccCCcEEEEEecccCc--------------------------hhHHHHHHHHHHHcCcEEEEEEE
Q 037675          343 EKLEFLMFDFDRILRAGGLFWLDNFYCAN--------------------------DEKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       343 ~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--------------------------ee~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      .   .++.++.|+|||||++++..+....                          ....+.+..++++.||+.+.+..
T Consensus       110 ~---~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  184 (230)
T 3cc8_A          110 W---AVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDR  184 (230)
T ss_dssp             H---HHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             H---HHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEe
Confidence            4   8999999999999999998652110                          01246789999999999887654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.59  E-value=1.3e-14  Score=133.10  Aligned_cols=124  Identities=12%  Similarity=0.046  Sum_probs=95.1

Q ss_pred             CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc----C-------CCceeecccCCCCCCCCccceEEe
Q 037675          266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR----G-------LFPLYLSLDHRFPFYDNVFDLVHA  332 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR----G-------li~~~~~~~e~LPf~d~sFDlV~s  332 (418)
                      .+|||+|||+|.++..|++++  ..++  ++|+++.+++.++++    +       -+.+..++...+++++++||+|++
T Consensus        31 ~~vLDiGcG~G~~~~~l~~~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  108 (217)
T 3jwh_A           31 RRVIDLGCGQGNLLKILLKDSFFEQIT--GVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV  108 (217)
T ss_dssp             CEEEEETCTTCHHHHHHHHCTTCSEEE--EEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred             CEEEEeCCCCCHHHHHHHhhCCCCEEE--EEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence            499999999999999999875  4554  589999999988775    2       234556777777888899999999


Q ss_pred             cCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc----------------------CchhHHHHHHHHHHHcCcEEE
Q 037675          333 SSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC----------------------ANDEKKSALTRLIERFGYKKL  390 (418)
Q Consensus       333 ~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~----------------------~~ee~~~~~~~l~~~~Gfk~l  390 (418)
                      ..+++++.+ ..+..++.++.|+|||||++++.....                      ..++..+.+..++++.||+..
T Consensus       109 ~~~l~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~  187 (217)
T 3jwh_A          109 IEVIEHLDL-SRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQ  187 (217)
T ss_dssp             ESCGGGCCH-HHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEE
T ss_pred             HHHHHcCCH-HHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEE
Confidence            999999854 445689999999999999877665311                      112233344589999999765


Q ss_pred             EE
Q 037675          391 KW  392 (418)
Q Consensus       391 ~W  392 (418)
                      ..
T Consensus       188 ~~  189 (217)
T 3jwh_A          188 FQ  189 (217)
T ss_dssp             EC
T ss_pred             EE
Confidence            43

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.58  E-value=4e-14  Score=130.90  Aligned_cols=110  Identities=17%  Similarity=0.218  Sum_probs=86.2

Q ss_pred             cHHHHHHHHc-cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----C-CCceeecccCCCCCC
Q 037675          250 NDFLIDDVLA-LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----G-LFPLYLSLDHRFPFY  323 (418)
Q Consensus       250 y~~~I~~lL~-l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----G-li~~~~~~~e~LPf~  323 (418)
                      |...+..++. +.++  .+|||+|||+|.++..+++. ..++  ++|+++.+++.++++    + -+.+..++...+|++
T Consensus        20 ~~~~~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~-~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~   94 (243)
T 3d2l_A           20 YPEWVAWVLEQVEPG--KRIADIGCGTGTATLLLADH-YEVT--GVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP   94 (243)
T ss_dssp             HHHHHHHHHHHSCTT--CEEEEESCTTCHHHHHHTTT-SEEE--EEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS
T ss_pred             HHHHHHHHHHHcCCC--CeEEEecCCCCHHHHHHhhC-CeEE--EEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC
Confidence            4444444333 3444  58999999999999999988 5553  589999999888764    2 235566777788876


Q ss_pred             CCccceEEecC-cCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          324 DNVFDLVHASS-GLDVGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       324 d~sFDlV~s~~-~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                       ++||+|++.. ++++..+..+...++.++.|+|||||+++++
T Consensus        95 -~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           95 -EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             -SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence             8999999986 8998877777889999999999999999884

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.58  E-value=4e-14  Score=135.28  Aligned_cols=123  Identities=16%  Similarity=0.194  Sum_probs=95.8

Q ss_pred             CeEEEECCccChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAE-RNVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~-~gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++..+++ .+..++  ++|+++.+++.++++    |+   +.+..++.+.+|   ++||+|++..+++
T Consensus        66 ~~vLDiGcG~G~~~~~l~~~~~~~v~--gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~  140 (287)
T 1kpg_A           66 MTLLDVGCGWGATMMRAVEKYDVNVV--GLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFE  140 (287)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCCEEE--EEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGG
T ss_pred             CEEEEECCcccHHHHHHHHHcCCEEE--EEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCchh
Confidence            5899999999999999984 477664  589999999988775    33   344556777665   8999999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccCchh-------------------------------HHHHHHHHHHHcC
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDE-------------------------------KKSALTRLIERFG  386 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee-------------------------------~~~~~~~l~~~~G  386 (418)
                      |+.+ .+...++.++.|+|||||++++.++......                               ..+.+..++++.|
T Consensus       141 ~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG  219 (287)
T 1kpg_A          141 HFGH-ERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANG  219 (287)
T ss_dssp             GTCT-TTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTT
T ss_pred             hcCh-HHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCC
Confidence            9853 2345899999999999999999876432100                               1356888899999


Q ss_pred             cEEEEEEE
Q 037675          387 YKKLKWVV  394 (418)
Q Consensus       387 fk~l~W~~  394 (418)
                      |+.+.+..
T Consensus       220 f~~~~~~~  227 (287)
T 1kpg_A          220 FTVTRVQS  227 (287)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEEe
Confidence            99988754

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.58  E-value=1.7e-14  Score=135.05  Aligned_cols=96  Identities=18%  Similarity=0.190  Sum_probs=82.5

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC-----CCceeecccCCCCCCCCccceEEecCcCcCC
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG-----LFPLYLSLDHRFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG-----li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      ..+|||+|||+|.++..|++++..++  ++|+++.|++.++++-     -+.+..++.+.+|+++++||+|++..++++.
T Consensus        40 ~~~vLDiG~G~G~~~~~l~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  117 (263)
T 2yqz_A           40 EPVFLELGVGTGRIALPLIARGYRYI--ALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLV  117 (263)
T ss_dssp             CCEEEEETCTTSTTHHHHHTTTCEEE--EEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred             CCEEEEeCCcCCHHHHHHHHCCCEEE--EEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhhc
Confidence            35899999999999999999887664  5899999999988762     2345567888999999999999999999998


Q ss_pred             CChhHHHHHHHHhhccccCCcEEEEE
Q 037675          340 GQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       340 ~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      .+..   .++.++.|+|||||++++.
T Consensus       118 ~~~~---~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          118 PDWP---KVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             TTHH---HHHHHHHHHEEEEEEEEEE
T ss_pred             CCHH---HHHHHHHHHCCCCcEEEEE
Confidence            7544   8999999999999999876

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.58  E-value=6.6e-15  Score=142.96  Aligned_cols=145  Identities=13%  Similarity=0.161  Sum_probs=110.6

Q ss_pred             cCCCCCCeEEEECCccChHHHHHh--hc-CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccce
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMA--ER-NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDL  329 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La--~~-gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDl  329 (418)
                      +.++  .+|||+|||+|.++..|+  .. +..++  ++|+++.+++.++++    |+   +.++.++...+|++ ++||+
T Consensus       116 l~~~--~~vLDiGcG~G~~~~~la~~~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~  190 (305)
T 3ocj_A          116 LRPG--CVVASVPCGWMSELLALDYSACPGVQLV--GIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDL  190 (305)
T ss_dssp             CCTT--CEEEETTCTTCHHHHTSCCTTCTTCEEE--EEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEE
T ss_pred             CCCC--CEEEEecCCCCHHHHHHHHhcCCCCeEE--EEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEE
Confidence            4544  489999999999999985  22 45554  579999999988775    22   34566788889987 99999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC--------------ch---------------------hH
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA--------------ND---------------------EK  374 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~--------------~e---------------------e~  374 (418)
                      |++..+++++.++.....++.++.|+|||||++++.+....              ..                     ..
T Consensus       191 v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (305)
T 3ocj_A          191 LTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRT  270 (305)
T ss_dssp             EECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCC
T ss_pred             EEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCC
Confidence            99999999998887666789999999999999998874210              00                     12


Q ss_pred             HHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEEEEEcCC
Q 037675          375 KSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKPV  415 (418)
Q Consensus       375 ~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qKP~  415 (418)
                      .+++..++++.||+.+.....      ....+...+.+||.
T Consensus       271 ~~~~~~~l~~aGF~~v~~~~~------~~~~~~~v~a~Kpa  305 (305)
T 3ocj_A          271 HAQTRAQLEEAGFTDLRFEDD------RARLFPTVIARKPA  305 (305)
T ss_dssp             HHHHHHHHHHTTCEEEEEECC------TTSSSCEEEEECCC
T ss_pred             HHHHHHHHHHCCCEEEEEEcc------cCceeeEEEEecCC
Confidence            466889999999999876541      22345577888983

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.57  E-value=1.3e-14  Score=132.10  Aligned_cols=96  Identities=18%  Similarity=0.267  Sum_probs=81.8

Q ss_pred             CCeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHcC-CCceeecccCCCCCCCCccceEEecCcCcCCCCh
Q 037675          265 IRIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAARG-LFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQP  342 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eRG-li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~  342 (418)
                      ..+|||+|||+|.++..+   +. .++  ++|+++.+++.++++. -+.+..++.+.+|+++++||+|++..++++..++
T Consensus        37 ~~~vLdiG~G~G~~~~~l---~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~  111 (211)
T 2gs9_A           37 GESLLEVGAGTGYWLRRL---PYPQKV--GVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDV  111 (211)
T ss_dssp             CSEEEEETCTTCHHHHHC---CCSEEE--EECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCH
T ss_pred             CCeEEEECCCCCHhHHhC---CCCeEE--EEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCH
Confidence            459999999999999888   55 543  4799999999998873 2366677888999999999999999999998755


Q ss_pred             hHHHHHHHHhhccccCCcEEEEEecc
Q 037675          343 EKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       343 ~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      .   .++.++.|+|||||++++..+.
T Consensus       112 ~---~~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A          112 E---RVLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             H---HHHHHHHHHEEEEEEEEEEEEC
T ss_pred             H---HHHHHHHHHcCCCCEEEEEecC
Confidence            4   8999999999999999998763

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.57  E-value=3.3e-15  Score=151.15  Aligned_cols=124  Identities=12%  Similarity=0.181  Sum_probs=101.2

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceee-----cccCCCCCCCCccceEEecCcCcCC
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYL-----SLDHRFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~-----~~~e~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      ..+|||||||+|.++..|++++..++  ++|+++.|++.++++++ +...     +..+.+|+++++||+|++..+++|+
T Consensus       108 ~~~VLDiGcG~G~~~~~l~~~g~~v~--gvD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~  184 (416)
T 4e2x_A          108 DPFIVEIGCNDGIMLRTIQEAGVRHL--GFEPSSGVAAKAREKGI-RVRTDFFEKATADDVRRTEGPANVIYAANTLCHI  184 (416)
T ss_dssp             SCEEEEETCTTTTTHHHHHHTTCEEE--EECCCHHHHHHHHTTTC-CEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGC
T ss_pred             CCEEEEecCCCCHHHHHHHHcCCcEE--EECCCHHHHHHHHHcCC-CcceeeechhhHhhcccCCCCEEEEEECChHHhc
Confidence            35999999999999999999988775  58999999999999976 3322     4566778889999999999999999


Q ss_pred             CChhHHHHHHHHhhccccCCcEEEEEecccC------------ch----hHHHHHHHHHHHcCcEEEEEEE
Q 037675          340 GQPEKLEFLMFDFDRILRAGGLFWLDNFYCA------------ND----EKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       340 ~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~------------~e----e~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      .++.   .+|.++.|+|||||++++..+...            .+    ...+.+..++++.||+.+....
T Consensus       185 ~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~  252 (416)
T 4e2x_A          185 PYVQ---SVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQR  252 (416)
T ss_dssp             TTHH---HHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCHH---HHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEE
Confidence            7554   899999999999999999865311            00    1235689999999999987554

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.57  E-value=2.5e-14  Score=131.94  Aligned_cols=98  Identities=17%  Similarity=0.165  Sum_probs=83.1

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccceEEec-CcCcCCCChh
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDLVHAS-SGLDVGGQPE  343 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~-~~L~~~~~~~  343 (418)
                      .+|||+|||+|.++..|++++..++  ++|+++.+++.++++.. +.+..++...+++ +++||+|+|. .++++..++.
T Consensus        42 ~~vLdiG~G~G~~~~~l~~~~~~v~--~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~  118 (239)
T 3bxo_A           42 SSLLDVACGTGTHLEHFTKEFGDTA--GLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTE  118 (239)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHSEEE--EEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHH
T ss_pred             CeEEEecccCCHHHHHHHHhCCcEE--EEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHH
Confidence            5899999999999999998866554  47999999999988732 3566678888887 7899999965 5898887777


Q ss_pred             HHHHHHHHhhccccCCcEEEEEe
Q 037675          344 KLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       344 ~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +...+|.++.|+|||||++++..
T Consensus       119 ~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          119 ELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEe
Confidence            78899999999999999999875

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.57  E-value=1.9e-14  Score=137.90  Aligned_cols=125  Identities=15%  Similarity=0.041  Sum_probs=95.7

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC-----------------------CCceeecccCCCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG-----------------------LFPLYLSLDHRFPF  322 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG-----------------------li~~~~~~~e~LPf  322 (418)
                      .+|||+|||+|..+..|+++|..|+  ++|+|+.|++.|+++.                       -+.++.++...+++
T Consensus        70 ~~vLD~GCG~G~~~~~La~~G~~V~--gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~  147 (252)
T 2gb4_A           70 LRVFFPLCGKAIEMKWFADRGHTVV--GVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR  147 (252)
T ss_dssp             CEEEETTCTTCTHHHHHHHTTCEEE--EECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred             CeEEEeCCCCcHHHHHHHHCCCeEE--EEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence            4899999999999999999998775  5899999999887542                       12445678888988


Q ss_pred             CC-CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC-----ch---hHHHHHHHHHHHcCcEEEEEE
Q 037675          323 YD-NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA-----ND---EKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       323 ~d-~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-----~e---e~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      .+ ++||+|++..+|++.. ....+.++.++.|+|||||++++......     ++   -..+++..+++. +|+.+.+.
T Consensus       148 ~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~~  225 (252)
T 2gb4_A          148 ANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCLE  225 (252)
T ss_dssp             GCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred             ccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEEe
Confidence            75 8999999999998875 34556899999999999999965433211     10   123557777776 58887765


Q ss_pred             E
Q 037675          394 V  394 (418)
Q Consensus       394 ~  394 (418)
                      .
T Consensus       226 ~  226 (252)
T 2gb4_A          226 E  226 (252)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.57  E-value=1.4e-14  Score=139.22  Aligned_cols=124  Identities=10%  Similarity=0.063  Sum_probs=96.9

Q ss_pred             CeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++..|++.   +..++  ++|+++.+++.++++    +. +.+..++++.+|+ +++||+|++..+++
T Consensus        24 ~~vLDiGcG~G~~~~~l~~~~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~l~  100 (284)
T 3gu3_A           24 VHIVDYGCGYGYLGLVLMPLLPEGSKYT--GIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKYDIAICHAFLL  100 (284)
T ss_dssp             CEEEEETCTTTHHHHHHTTTSCTTCEEE--EEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSCEEEEEEESCGG
T ss_pred             CeEEEecCCCCHHHHHHHHhCCCCCEEE--EEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc-CCCeeEEEECChhh
Confidence            59999999999999999987   45664  589999999988775    21 2455678888888 56999999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEeccc---------Cc----h-----h-----------------HHHHHHHHH
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC---------AN----D-----E-----------------KKSALTRLI  382 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~---------~~----e-----e-----------------~~~~~~~l~  382 (418)
                      +..+..   .++.++.|+|||||++++.++.+         .+    +     .                 ....+..++
T Consensus       101 ~~~~~~---~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  177 (284)
T 3gu3_A          101 HMTTPE---TMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYL  177 (284)
T ss_dssp             GCSSHH---HHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHHH
T ss_pred             cCCCHH---HHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHHHHH
Confidence            987664   89999999999999999887641         00    0     0                 012467889


Q ss_pred             HHcCcEEEEEEEc
Q 037675          383 ERFGYKKLKWVVG  395 (418)
Q Consensus       383 ~~~Gfk~l~W~~~  395 (418)
                      +++||+.+.....
T Consensus       178 ~~aGF~~v~~~~~  190 (284)
T 3gu3_A          178 SELGVKNIECRVS  190 (284)
T ss_dssp             HHTTCEEEEEEEC
T ss_pred             HHcCCCeEEEEEc
Confidence            9999999876543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.56  E-value=6.4e-14  Score=135.41  Aligned_cols=124  Identities=17%  Similarity=0.181  Sum_probs=97.8

Q ss_pred             CeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||||||+|.++..++++ +..++  ++|+++.+++.++++    |+   +.+..++...+   +++||+|++..+++
T Consensus        74 ~~vLDiGcG~G~~~~~la~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~~  148 (302)
T 3hem_A           74 MTLLDIGCGWGSTMRHAVAEYDVNVI--GLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGAFE  148 (302)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCCEEE--EEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESCGG
T ss_pred             CEEEEeeccCcHHHHHHHHhCCCEEE--EEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcchHH
Confidence            58999999999999999988 86664  589999999887765    43   23455666655   89999999999999


Q ss_pred             CCCCh------hHHHHHHHHhhccccCCcEEEEEecccCchh-------------------------------HHHHHHH
Q 037675          338 VGGQP------EKLEFLMFDFDRILRAGGLFWLDNFYCANDE-------------------------------KKSALTR  380 (418)
Q Consensus       338 ~~~~~------~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee-------------------------------~~~~~~~  380 (418)
                      ++.++      .....++.++.|+|||||++++.++......                               ..+.+..
T Consensus       149 ~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~  228 (302)
T 3hem_A          149 HFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDY  228 (302)
T ss_dssp             GTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHH
T ss_pred             hcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHHHHHH
Confidence            98654      4567999999999999999999876432210                               1246788


Q ss_pred             HHHHcCcEEEEEEE
Q 037675          381 LIERFGYKKLKWVV  394 (418)
Q Consensus       381 l~~~~Gfk~l~W~~  394 (418)
                      ++++.||+.+.+..
T Consensus       229 ~l~~aGf~~~~~~~  242 (302)
T 3hem_A          229 YSSNAGWKVERYHR  242 (302)
T ss_dssp             HHHHHTCEEEEEEE
T ss_pred             HHHhCCcEEEEEEe
Confidence            89999999887654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.56  E-value=1.3e-14  Score=146.20  Aligned_cols=123  Identities=18%  Similarity=0.280  Sum_probs=99.0

Q ss_pred             CeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc---------C-----CCceeecccCCC------CC
Q 037675          266 RIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR---------G-----LFPLYLSLDHRF------PF  322 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR---------G-----li~~~~~~~e~L------Pf  322 (418)
                      .+|||+|||+|.++..|++.   +..++  ++|+++.|++.++++         |     -+.+..++.+.+      |+
T Consensus        85 ~~VLDlGcG~G~~~~~la~~~~~~~~v~--gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           85 ATVLDLGCGTGRDVYLASKLVGEHGKVI--GVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHTTTCEEE--EEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CEEEEecCccCHHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            58999999999999999875   34554  579999999998876         4     235566777777      99


Q ss_pred             CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch-------------------hHHHHHHHHHH
Q 037675          323 YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND-------------------EKKSALTRLIE  383 (418)
Q Consensus       323 ~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e-------------------e~~~~~~~l~~  383 (418)
                      ++++||+|++..+++++.++.   .+|.++.|+|||||++++.++.....                   ...+.+..+++
T Consensus       163 ~~~~fD~V~~~~~l~~~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  239 (383)
T 4fsd_A          163 PDSSVDIVISNCVCNLSTNKL---ALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVA  239 (383)
T ss_dssp             CTTCEEEEEEESCGGGCSCHH---HHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHH
T ss_pred             CCCCEEEEEEccchhcCCCHH---HHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHH
Confidence            999999999999999987654   89999999999999999987643321                   11256899999


Q ss_pred             HcCcEEEEEE
Q 037675          384 RFGYKKLKWV  393 (418)
Q Consensus       384 ~~Gfk~l~W~  393 (418)
                      +.||+.+++.
T Consensus       240 ~aGF~~v~~~  249 (383)
T 4fsd_A          240 EAGFRDVRLV  249 (383)
T ss_dssp             HTTCCCEEEE
T ss_pred             HCCCceEEEE
Confidence            9999877543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.56  E-value=1.6e-14  Score=135.39  Aligned_cols=150  Identities=15%  Similarity=0.126  Sum_probs=106.1

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHcC--C---------------------------------
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAARG--L---------------------------------  309 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eRG--l---------------------------------  309 (418)
                      .+|||+|||+|.++..+++.+. .++  ++|+++.|++.++++-  .                                 
T Consensus        58 ~~vLDlGcG~G~~~~~l~~~~~~~v~--gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  135 (265)
T 2i62_A           58 ELLIDIGSGPTIYQLLSACESFTEII--VSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA  135 (265)
T ss_dssp             EEEEEESCTTCCGGGTTGGGTEEEEE--EEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred             CEEEEECCCccHHHHHHhhcccCeEE--EecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence            5899999999999999998876 443  5899999999886642  1                                 


Q ss_pred             C-ceeecccCCC-CCCC---CccceEEecCcCcCCC-ChhHHHHHHHHhhccccCCcEEEEEecccC------------c
Q 037675          310 F-PLYLSLDHRF-PFYD---NVFDLVHASSGLDVGG-QPEKLEFLMFDFDRILRAGGLFWLDNFYCA------------N  371 (418)
Q Consensus       310 i-~~~~~~~e~L-Pf~d---~sFDlV~s~~~L~~~~-~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~------------~  371 (418)
                      + .+...+...+ ++++   ++||+|++..++++.. ...+...++.++.|+|||||++++.+....            .
T Consensus       136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~  215 (265)
T 2i62_A          136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSL  215 (265)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred             heeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccccc
Confidence            2 3444555554 3456   8999999999998432 224566999999999999999998764211            0


Q ss_pred             hhHHHHHHHHHHHcCcEEEEEEEcccCC-C--CccceEEEEEEEcCCCC
Q 037675          372 DEKKSALTRLIERFGYKKLKWVVGEKGE-T--GKSEVYLSAVLQKPVRV  417 (418)
Q Consensus       372 ee~~~~~~~l~~~~Gfk~l~W~~~~k~d-~--~~~e~~l~Ai~qKP~~~  417 (418)
                      .-..+.+..+++..||+.+.+....... .  .....++..+.+|+..+
T Consensus       216 ~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~  264 (265)
T 2i62_A          216 PLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPGRS  264 (265)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC--
T ss_pred             ccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEecccccC
Confidence            1123568899999999999887654221 1  11234566778898653

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.56  E-value=1.1e-13  Score=126.60  Aligned_cols=100  Identities=16%  Similarity=0.222  Sum_probs=81.9

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc-----CCCceeecccCCCCCCCCccceEEecCcCcCC
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR-----GLFPLYLSLDHRFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR-----Gli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      ..+|||+|||+|.++..+++++..++  ++|+++.+++.++++     .-+.+..++...+++++++||+|++..++++.
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~  116 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGFEVV--GVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF  116 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTCEEE--EEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred             CCeEEEEeccCCHHHHHHHHcCCEEE--EEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhC
Confidence            35899999999999999999876554  589999999887764     22456667888889889999999999886554


Q ss_pred             CChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          340 GQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       340 ~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      . ..+...++.++.|+|||||++++.++
T Consensus       117 ~-~~~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A          117 E-PLELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             C-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             C-HHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            3 24466899999999999999988765

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.54  E-value=6.8e-14  Score=130.80  Aligned_cols=97  Identities=16%  Similarity=0.138  Sum_probs=82.4

Q ss_pred             CCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcC-CCceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675          265 IRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARG-LFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ  341 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRG-li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~  341 (418)
                      ..+|||+|||+|.++..++++  +..++  ++|+++.|++.++++. -+.+..++.+.+| ++++||+|++..++++..+
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~--~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~  110 (259)
T 2p35_A           34 VLNGYDLGCGPGNSTELLTDRYGVNVIT--GIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWVPD  110 (259)
T ss_dssp             CSSEEEETCTTTHHHHHHHHHHCTTSEE--EEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGSTT
T ss_pred             CCEEEEecCcCCHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhCCC
Confidence            358999999999999999987  65554  4799999999998873 2356677888888 8899999999999999865


Q ss_pred             hhHHHHHHHHhhccccCCcEEEEEec
Q 037675          342 PEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       342 ~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ..   .+|.++.|+|||||++++..+
T Consensus       111 ~~---~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A          111 HL---AVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             HH---HHHHHHGGGEEEEEEEEEEEE
T ss_pred             HH---HHHHHHHHhcCCCeEEEEEeC
Confidence            44   899999999999999998765

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.54  E-value=4.4e-14  Score=135.73  Aligned_cols=130  Identities=15%  Similarity=0.054  Sum_probs=91.6

Q ss_pred             CCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCC----------------------------------
Q 037675          265 IRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGL----------------------------------  309 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGl----------------------------------  309 (418)
                      ..+|||||||+|.++..++.. +..++  ++|+++.|++.|+++--                                  
T Consensus        72 ~~~vLDiGcG~G~~~~l~~~~~~~~v~--gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           72 GRTLIDIGSGPTVYQLLSACSHFEDIT--MTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CSEEEEETCTTCCGGGTTGGGGCSEEE--EECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCeEEEECCCcChHHHHhhccCCCeEE--EeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            358999999999965545443 55554  58999999988766210                                  


Q ss_pred             --CceeecccCC-CCC-----CCCccceEEecCcCcCCCC-hhHHHHHHHHhhccccCCcEEEEEecccC-----c----
Q 037675          310 --FPLYLSLDHR-FPF-----YDNVFDLVHASSGLDVGGQ-PEKLEFLMFDFDRILRAGGLFWLDNFYCA-----N----  371 (418)
Q Consensus       310 --i~~~~~~~e~-LPf-----~d~sFDlV~s~~~L~~~~~-~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-----~----  371 (418)
                        +.+...+++. +|+     ++++||+|+++.++++... ..+...+|.|+.|+|||||+|++.+....     .    
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~  229 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL  229 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeee
Confidence              0122235555 664     4567999999999998433 24567999999999999999988753211     0    


Q ss_pred             ---hhHHHHHHHHHHHcCcEEEEEEEcc
Q 037675          372 ---DEKKSALTRLIERFGYKKLKWVVGE  396 (418)
Q Consensus       372 ---ee~~~~~~~l~~~~Gfk~l~W~~~~  396 (418)
                         ....+.+..+++..||+.+.+....
T Consensus       230 ~~~~~~~~~l~~~l~~aGf~~~~~~~~~  257 (289)
T 2g72_A          230 TVVPVSEEEVREALVRSGYKVRDLRTYI  257 (289)
T ss_dssp             ECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             eeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence               0124568999999999998876544

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.52  E-value=2.8e-14  Score=133.20  Aligned_cols=130  Identities=13%  Similarity=0.097  Sum_probs=92.5

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----C-CceeecccCCC--CCCCCccceEEe-cCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----L-FPLYLSLDHRF--PFYDNVFDLVHA-SSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----l-i~~~~~~~e~L--Pf~d~sFDlV~s-~~~L~  337 (418)
                      .+|||+|||+|.++..|++.+..-+ +++|+++.|++.|+++.    . +.++.++.+.+  |+++++||+|++ ...++
T Consensus        62 ~~vLDiGcGtG~~~~~l~~~~~~~v-~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~  140 (236)
T 1zx0_A           62 GRVLEVGFGMAIAASKVQEAPIDEH-WIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLS  140 (236)
T ss_dssp             EEEEEECCTTSHHHHHHHTSCEEEE-EEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCB
T ss_pred             CeEEEEeccCCHHHHHHHhcCCCeE-EEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcccc
Confidence            4899999999999999988765322 35899999999988753    1 24455677777  899999999999 55432


Q ss_pred             -CCCChhHHHHHHHHhhccccCCcEEEEEecccCc-----------hhHHHHHHHHHHHcCcE--EEEEEEcc
Q 037675          338 -VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-----------DEKKSALTRLIERFGYK--KLKWVVGE  396 (418)
Q Consensus       338 -~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-----------ee~~~~~~~l~~~~Gfk--~l~W~~~~  396 (418)
                       +.......+.++.|+.|+|||||+|++.+.....           ....+.....+...||+  .+.+.+..
T Consensus       141 ~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~i~~~~~~  213 (236)
T 1zx0_A          141 EETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENIRTEVMA  213 (236)
T ss_dssp             GGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGGEEEEEEE
T ss_pred             hhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCCCceeEEEEe
Confidence             1112344567899999999999999887653211           11123455678889998  46665543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.52  E-value=1.4e-13  Score=133.69  Aligned_cols=123  Identities=19%  Similarity=0.154  Sum_probs=96.6

Q ss_pred             CeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++..+++. +..++  ++|+++.+++.++++    |+   +.+..++.+.+|   ++||+|++..+++
T Consensus        92 ~~vLDiGcG~G~~~~~la~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~  166 (318)
T 2fk8_A           92 MTLLDIGCGWGTTMRRAVERFDVNVI--GLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFE  166 (318)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHCCEEE--EEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGG
T ss_pred             CEEEEEcccchHHHHHHHHHCCCEEE--EEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChHH
Confidence            58999999999999999987 87664  589999999988775    43   344556666665   7899999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccCchh-------------------------------HHHHHHHHHHHcC
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDE-------------------------------KKSALTRLIERFG  386 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee-------------------------------~~~~~~~l~~~~G  386 (418)
                      +..+ .+...++.++.|+|||||++++.++......                               ..+.+..++++.|
T Consensus       167 ~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG  245 (318)
T 2fk8_A          167 HFGH-ENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAG  245 (318)
T ss_dssp             GTCG-GGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTT
T ss_pred             hcCH-HHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCC
Confidence            8853 3456899999999999999999876432210                               1356788899999


Q ss_pred             cEEEEEEE
Q 037675          387 YKKLKWVV  394 (418)
Q Consensus       387 fk~l~W~~  394 (418)
                      |+.+.+..
T Consensus       246 f~~~~~~~  253 (318)
T 2fk8_A          246 FTVPEPLS  253 (318)
T ss_dssp             CBCCCCEE
T ss_pred             CEEEEEEe
Confidence            99887544

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.52  E-value=3.7e-14  Score=136.81  Aligned_cols=125  Identities=14%  Similarity=0.113  Sum_probs=88.8

Q ss_pred             CeEEEECCccChHHHH----Hhhc--CcEEEEeccCCCHHhHHHHHHc-----CCCc--ee--ecccCCCC------CCC
Q 037675          266 RIGFDIGGGSGTFAAR----MAER--NVTVITNTLNVDAPYSEFIAAR-----GLFP--LY--LSLDHRFP------FYD  324 (418)
Q Consensus       266 r~VLDvGCGtG~faa~----La~~--gV~vv~~alD~s~~~l~~a~eR-----Gli~--~~--~~~~e~LP------f~d  324 (418)
                      .+|||||||+|.++..    ++.+  ++.+..+++|+|+.|++.++++     ++..  +.  .+..+.++      |++
T Consensus        54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  133 (292)
T 2aot_A           54 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKEL  133 (292)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCC
T ss_pred             CeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCC
Confidence            4899999999976643    3333  4543224589999999988775     3311  11  23344443      678


Q ss_pred             CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc--------------------hhHHHHHHHHHHH
Q 037675          325 NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN--------------------DEKKSALTRLIER  384 (418)
Q Consensus       325 ~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--------------------ee~~~~~~~l~~~  384 (418)
                      ++||+|++..++||+.++.   .+|.|+.|+|||||++++.......                    ....+.+..++++
T Consensus       134 ~~fD~V~~~~~l~~~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  210 (292)
T 2aot_A          134 QKWDFIHMIQMLYYVKDIP---ATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDN  210 (292)
T ss_dssp             CCEEEEEEESCGGGCSCHH---HHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHH
T ss_pred             CceeEEEEeeeeeecCCHH---HHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHH
Confidence            9999999999999998765   8999999999999999886432110                    0013468899999


Q ss_pred             cCcEEEEEE
Q 037675          385 FGYKKLKWV  393 (418)
Q Consensus       385 ~Gfk~l~W~  393 (418)
                      .||+.+...
T Consensus       211 aGf~~~~~~  219 (292)
T 2aot_A          211 LGLKYECYD  219 (292)
T ss_dssp             HTCCEEEEE
T ss_pred             CCCceEEEE
Confidence            999877643

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.52  E-value=3.1e-13  Score=120.71  Aligned_cols=130  Identities=16%  Similarity=0.128  Sum_probs=86.7

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCC-CCCCccceEEec-CcCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFP-FYDNVFDLVHAS-SGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LP-f~d~sFDlV~s~-~~L~  337 (418)
                      .+|||+|||+|.++..|++++..++  ++|+++.|++.|+++    |+  +.+..++.+.++ +.+++||+|+++ ..++
T Consensus        24 ~~vLDiGcG~G~~~~~la~~~~~v~--~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~  101 (185)
T 3mti_A           24 SIVVDATMGNGNDTAFLAGLSKKVY--AFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLP  101 (185)
T ss_dssp             CEEEESCCTTSHHHHHHHTTSSEEE--EEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC---
T ss_pred             CEEEEEcCCCCHHHHHHHHhCCEEE--EEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCC
Confidence            5899999999999999999876664  589999999887654    44  344556666654 558899999987 3333


Q ss_pred             C-----CCChhHHHHHHHHhhccccCCcEEEEEecccCc--hhHHHHHHHHHHH---cCcEEEEEEEccc
Q 037675          338 V-----GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN--DEKKSALTRLIER---FGYKKLKWVVGEK  397 (418)
Q Consensus       338 ~-----~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--ee~~~~~~~l~~~---~Gfk~l~W~~~~k  397 (418)
                      +     ...+.....++.++.|+|||||++++..+....  .+..+.+...++.   .+|...++....+
T Consensus       102 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  171 (185)
T 3mti_A          102 SADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQ  171 (185)
T ss_dssp             --------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSC
T ss_pred             CcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhcc
Confidence            2     113345567899999999999999887664321  1222234444444   4577777666443

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.52  E-value=3.9e-14  Score=134.86  Aligned_cols=100  Identities=15%  Similarity=0.179  Sum_probs=82.1

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCC-CCCccceEEecCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPF-YDNVFDLVHASSGL  336 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf-~d~sFDlV~s~~~L  336 (418)
                      .+|||+|||+|.++..+++.+. .++  ++|+++.+++.++++    ++   +.+..++...+|+ ++++||+|++..++
T Consensus        66 ~~vLDiGcG~G~~~~~l~~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l  143 (298)
T 1ri5_A           66 DSVLDLGCGKGGDLLKYERAGIGEYY--GVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF  143 (298)
T ss_dssp             CEEEEETCTTTTTHHHHHHHTCSEEE--EEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred             CeEEEECCCCCHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence            5899999999999999988765 554  589999999988775    22   3455678888888 68999999999998


Q ss_pred             cCC-CChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          337 DVG-GQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       337 ~~~-~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      |+. .+..+...+|.++.|+|||||++++..+
T Consensus       144 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  175 (298)
T 1ri5_A          144 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  175 (298)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            872 3455677999999999999999998764

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.51  E-value=1.2e-13  Score=132.01  Aligned_cols=143  Identities=12%  Similarity=0.164  Sum_probs=101.6

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      .+|||+|||+|.++..|++++..++  ++|+++.+++.++++    |+ +.+..++...+++ +++||+|++..++++..
T Consensus       122 ~~vLD~GcG~G~~~~~l~~~g~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~  198 (286)
T 3m70_A          122 CKVLDLGCGQGRNSLYLSLLGYDVT--SWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFLN  198 (286)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEE--EEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGSC
T ss_pred             CcEEEECCCCCHHHHHHHHCCCeEE--EEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhCC
Confidence            4899999999999999999987764  589999999877654    43 3455677888877 88999999999999885


Q ss_pred             ChhHHHHHHHHhhccccCCcEEEEEecccCch----------hHHHHHHHHHHHcCcEEEEEEEc----ccCCCCcc---
Q 037675          341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCAND----------EKKSALTRLIERFGYKKLKWVVG----EKGETGKS---  403 (418)
Q Consensus       341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e----------e~~~~~~~l~~~~Gfk~l~W~~~----~k~d~~~~---  403 (418)
                      + ..+..++.++.|+|||||++++.......+          -..+++..+++.  |+.+.+...    .+.+....   
T Consensus       199 ~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~  275 (286)
T 3m70_A          199 R-ERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYNENMGELHKTDENGNRIK  275 (286)
T ss_dssp             G-GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEECCEEEEEEECSSCCEEE
T ss_pred             H-HHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEEccCCeeeeccCCCCEEE
Confidence            4 456789999999999999987765432210          012345555554  777776432    11221111   


Q ss_pred             ceEEEEEEEcC
Q 037675          404 EVYLSAVLQKP  414 (418)
Q Consensus       404 e~~l~Ai~qKP  414 (418)
                      ..++..+.+||
T Consensus       276 ~~~~~l~arK~  286 (286)
T 3m70_A          276 MKFATMLARKK  286 (286)
T ss_dssp             EEEEEEEEECC
T ss_pred             EEEEEEEEecC
Confidence            23667778887

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.51  E-value=1.7e-14  Score=136.55  Aligned_cols=97  Identities=20%  Similarity=0.281  Sum_probs=82.4

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCC-CChhH
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVG-GQPEK  344 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~-~~~~~  344 (418)
                      .+|||+|||+|.++..|++++..++  ++|+++.|++.++++....+..++.+.+|+++++||+|++..++.++ .+   
T Consensus        56 ~~vLDiGcG~G~~~~~l~~~~~~v~--gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~---  130 (260)
T 2avn_A           56 CRVLDLGGGTGKWSLFLQERGFEVV--LVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN---  130 (260)
T ss_dssp             CEEEEETCTTCHHHHHHHTTTCEEE--EEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC---
T ss_pred             CeEEEeCCCcCHHHHHHHHcCCeEE--EEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc---
Confidence            5899999999999999999987664  58999999999998865335667888999999999999998866655 43   


Q ss_pred             HHHHHHHhhccccCCcEEEEEec
Q 037675          345 LEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       345 le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ...+|.++.|+|||||++++..+
T Consensus       131 ~~~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A          131 KDKAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCeEEEEEeC
Confidence            45899999999999999988765

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.50  E-value=2.2e-14  Score=139.12  Aligned_cols=125  Identities=15%  Similarity=0.139  Sum_probs=92.0

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcC-----------------------------------
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARG-----------------------------------  308 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRG-----------------------------------  308 (418)
                      .+|||||||+|.++..|+++  +..++  ++|+++.|++.|+++-                                   
T Consensus        48 ~~VLDiGCG~G~~~~~la~~~~~~~v~--gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           48 RDVLDLGCNVGHLTLSIACKWGPSRMV--GLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             SEEEEESCTTCHHHHHHHHHTCCSEEE--EEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CcEEEeCCCCCHHHHHHHHHcCCCEEE--EECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            58999999999999999987  46654  5899999999888751                                   


Q ss_pred             -----------------------------CCceeecccCCC-----CCCCCccceEEecCcCcCCC---ChhHHHHHHHH
Q 037675          309 -----------------------------LFPLYLSLDHRF-----PFYDNVFDLVHASSGLDVGG---QPEKLEFLMFD  351 (418)
Q Consensus       309 -----------------------------li~~~~~~~e~L-----Pf~d~sFDlV~s~~~L~~~~---~~~~le~~L~E  351 (418)
                                                   .+.+..++....     ++.+++||+|+|..+++|.+   ...++..++.+
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                         122333333322     36789999999999987653   44567899999


Q ss_pred             hhccccCCcEEEEEecccC--------chhH----------HHHHHHHHHH--cCcEEEEE
Q 037675          352 FDRILRAGGLFWLDNFYCA--------NDEK----------KSALTRLIER--FGYKKLKW  392 (418)
Q Consensus       352 i~RVLRPGG~~ii~~~~~~--------~ee~----------~~~~~~l~~~--~Gfk~l~W  392 (418)
                      +.|+|||||+|++....+.        .++.          .+.+..++..  +||+.++.
T Consensus       206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~  266 (292)
T 3g07_A          206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYEL  266 (292)
T ss_dssp             HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEE
T ss_pred             HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEE
Confidence            9999999999999754221        1111          1357778887  99987764

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.49  E-value=2.5e-13  Score=124.11  Aligned_cols=123  Identities=15%  Similarity=0.221  Sum_probs=91.1

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhHH
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKL  345 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~l  345 (418)
                      .+|||+|||+|.++..++   ..++  ++|+++.        . +.+..++.+.+|+++++||+|++..++|+ .+   .
T Consensus        69 ~~vLDiG~G~G~~~~~l~---~~v~--~~D~s~~--------~-~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~---~  130 (215)
T 2zfu_A           69 LVVADFGCGDCRLASSIR---NPVH--CFDLASL--------D-PRVTVCDMAQVPLEDESVDVAVFCLSLMG-TN---I  130 (215)
T ss_dssp             SCEEEETCTTCHHHHHCC---SCEE--EEESSCS--------S-TTEEESCTTSCSCCTTCEEEEEEESCCCS-SC---H
T ss_pred             CeEEEECCcCCHHHHHhh---ccEE--EEeCCCC--------C-ceEEEeccccCCCCCCCEeEEEEehhccc-cC---H
Confidence            489999999999998884   2332  3577665        2 36677788889999999999999999974 43   3


Q ss_pred             HHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEEEEEcC
Q 037675          346 EFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQKP  414 (418)
Q Consensus       346 e~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qKP  414 (418)
                      ..++.++.|+|||||++++.++..... ..+.+..++++.||+.+.....       +..+...+++|+
T Consensus       131 ~~~l~~~~~~L~~gG~l~i~~~~~~~~-~~~~~~~~l~~~Gf~~~~~~~~-------~~~~~~~~~~k~  191 (215)
T 2zfu_A          131 RDFLEEANRVLKPGGLLKVAEVSSRFE-DVRTFLRAVTKLGFKIVSKDLT-------NSHFFLFDFQKT  191 (215)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEECGGGCS-CHHHHHHHHHHTTEEEEEEECC-------STTCEEEEEEEC
T ss_pred             HHHHHHHHHhCCCCeEEEEEEcCCCCC-CHHHHHHHHHHCCCEEEEEecC-------CCeEEEEEEEec
Confidence            489999999999999999987643221 2345888999999988764321       223445567775

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.49  E-value=1.4e-14  Score=136.59  Aligned_cols=138  Identities=12%  Similarity=0.098  Sum_probs=91.0

Q ss_pred             ccccccCCcHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----C-Cceeecc
Q 037675          242 RYIKARGKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----L-FPLYLSL  316 (418)
Q Consensus       242 ~W~~~~~~y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----l-i~~~~~~  316 (418)
                      +|..+   ++..+.+++. .+|  .+|||||||+|..+.++++++..-+ +++|+++.|++.|+++.    . +.++.++
T Consensus        44 ~we~~---~m~~~a~~~~-~~G--~rVLdiG~G~G~~~~~~~~~~~~~v-~~id~~~~~~~~a~~~~~~~~~~~~~~~~~  116 (236)
T 3orh_A           44 RWETP---YMHALAAAAS-SKG--GRVLEVGFGMAIAASKVQEAPIDEH-WIIECNDGVFQRLRDWAPRQTHKVIPLKGL  116 (236)
T ss_dssp             GGGHH---HHHHHHHHHT-TTC--EEEEEECCTTSHHHHHHTTSCEEEE-EEEECCHHHHHHHHHHGGGCSSEEEEEESC
T ss_pred             HHHHH---HHHHHHHhhc-cCC--CeEEEECCCccHHHHHHHHhCCcEE-EEEeCCHHHHHHHHHHHhhCCCceEEEeeh
Confidence            55443   3344444433 233  4899999999999999998864333 35899999999988753    2 1233344


Q ss_pred             cCC--CCCCCCccceEEecC-----cCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-----------hhHHHHH
Q 037675          317 DHR--FPFYDNVFDLVHASS-----GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-----------DEKKSAL  378 (418)
Q Consensus       317 ~e~--LPf~d~sFDlV~s~~-----~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-----------ee~~~~~  378 (418)
                      ++.  .++++++||.|+...     .+++.   .+.+.++.|+.|+|||||.|++.+.....           ....+.+
T Consensus       117 a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~---~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~  193 (236)
T 3orh_A          117 WEDVAPTLPDGHFDGILYDTYPLSEETWHT---HQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQ  193 (236)
T ss_dssp             HHHHGGGSCTTCEEEEEECCCCCBGGGTTT---HHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHT
T ss_pred             HHhhcccccccCCceEEEeeeecccchhhh---cchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHH
Confidence            433  367899999998632     23333   34568999999999999999775431111           1123445


Q ss_pred             HHHHHHcCcEE
Q 037675          379 TRLIERFGYKK  389 (418)
Q Consensus       379 ~~l~~~~Gfk~  389 (418)
                      ...+.+.||+.
T Consensus       194 ~~~L~eaGF~~  204 (236)
T 3orh_A          194 VPALLEAGFRR  204 (236)
T ss_dssp             HHHHHHHTCCG
T ss_pred             HHHHHHcCCeE
Confidence            66678889975

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.47  E-value=1.6e-13  Score=132.39  Aligned_cols=95  Identities=19%  Similarity=0.175  Sum_probs=79.8

Q ss_pred             CCCeEEEECCccChHHHHHhh---cCcEEEEeccCCCHHhHHHHHHc-----C---CCceeecccCCCCCCC------Cc
Q 037675          264 GIRIGFDIGGGSGTFAARMAE---RNVTVITNTLNVDAPYSEFIAAR-----G---LFPLYLSLDHRFPFYD------NV  326 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~---~gV~vv~~alD~s~~~l~~a~eR-----G---li~~~~~~~e~LPf~d------~s  326 (418)
                      ...+|||+|||+|.++..|++   .+..++  ++|+++.|++.++++     +   -+.+..++.+.+|+++      ++
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  113 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQII--GSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK  113 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEE--EEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEE--EEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence            446999999999999999995   456664  589999999988775     2   2345668889999888      89


Q ss_pred             cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEE
Q 037675          327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWL  364 (418)
Q Consensus       327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii  364 (418)
                      ||+|++..++++. +..   .++.++.|+|||||++++
T Consensus       114 fD~V~~~~~l~~~-~~~---~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          114 IDMITAVECAHWF-DFE---KFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             EEEEEEESCGGGS-CHH---HHHHHHHHHEEEEEEEEE
T ss_pred             eeEEeHhhHHHHh-CHH---HHHHHHHHhcCCCcEEEE
Confidence            9999999999998 544   899999999999999988

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.47  E-value=5.1e-13  Score=121.42  Aligned_cols=114  Identities=17%  Similarity=0.164  Sum_probs=88.3

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      .+|||+|||+|.++..+++.+. .++  ++|+++.+++.++++    ++  +.+..++...  +.+++||+|++...+++
T Consensus        62 ~~vLDiG~G~G~~~~~l~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~fD~i~~~~~~~~  137 (205)
T 3grz_A           62 LTVADVGTGSGILAIAAHKLGAKSVL--ATDISDESMTAAEENAALNGIYDIALQKTSLLA--DVDGKFDLIVANILAEI  137 (205)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCSEEE--EEESCHHHHHHHHHHHHHTTCCCCEEEESSTTT--TCCSCEEEEEEESCHHH
T ss_pred             CEEEEECCCCCHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHHcCCCceEEEeccccc--cCCCCceEEEECCcHHH
Confidence            5899999999999999998865 553  589999999887764    43  3445555544  45789999999876654


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEE
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W  392 (418)
                            +..++.++.|+|||||++++.++....   .+.+..++++.||+.+..
T Consensus       138 ------~~~~l~~~~~~L~~gG~l~~~~~~~~~---~~~~~~~~~~~Gf~~~~~  182 (205)
T 3grz_A          138 ------LLDLIPQLDSHLNEDGQVIFSGIDYLQ---LPKIEQALAENSFQIDLK  182 (205)
T ss_dssp             ------HHHHGGGSGGGEEEEEEEEEEEEEGGG---HHHHHHHHHHTTEEEEEE
T ss_pred             ------HHHHHHHHHHhcCCCCEEEEEecCccc---HHHHHHHHHHcCCceEEe
Confidence                  358899999999999999987664432   334778899999998764

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.45  E-value=3.5e-13  Score=134.65  Aligned_cols=122  Identities=18%  Similarity=0.163  Sum_probs=93.9

Q ss_pred             CCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCC--CCCCCccceEEec
Q 037675          265 IRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRF--PFYDNVFDLVHAS  333 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~L--Pf~d~sFDlV~s~  333 (418)
                      .++|||||||+|.++..++++  +..++  ++|+ +.+++.|+++    |+   +.+..++....  |++ ++||+|++.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~--~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~  255 (363)
T 3dp7_A          180 PKRLLDIGGNTGKWATQCVQYNKEVEVT--IVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS  255 (363)
T ss_dssp             CSEEEEESCTTCHHHHHHHHHSTTCEEE--EEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEE--EEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence            469999999999999999985  45554  4788 8899888765    33   34455666554  565 889999999


Q ss_pred             CcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc--------------------------hhHHHHHHHHHHHcCc
Q 037675          334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN--------------------------DEKKSALTRLIERFGY  387 (418)
Q Consensus       334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--------------------------ee~~~~~~~l~~~~Gf  387 (418)
                      .++|+|.+. ....+|.++.|+|||||+++|.+.....                          +...++|..++++.||
T Consensus       256 ~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf  334 (363)
T 3dp7_A          256 QFLDCFSEE-EVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGL  334 (363)
T ss_dssp             SCSTTSCHH-HHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTE
T ss_pred             chhhhCCHH-HHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCC
Confidence            999999754 3458899999999999999887753321                          0124679999999999


Q ss_pred             EEEE
Q 037675          388 KKLK  391 (418)
Q Consensus       388 k~l~  391 (418)
                      +.++
T Consensus       335 ~~v~  338 (363)
T 3dp7_A          335 EVEE  338 (363)
T ss_dssp             EESC
T ss_pred             eEEE
Confidence            9875

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.45  E-value=5.1e-13  Score=124.02  Aligned_cols=127  Identities=13%  Similarity=0.144  Sum_probs=93.6

Q ss_pred             cHHHHHHHHc--cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-Cceeeccc-CCCCCC-C
Q 037675          250 NDFLIDDVLA--LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-FPLYLSLD-HRFPFY-D  324 (418)
Q Consensus       250 y~~~I~~lL~--l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~-e~LPf~-d  324 (418)
                      ...++..++.  +.++  .+|||+|||+|.++..|++.+..++  ++|+++.+++.++++.. +.+..++. +.+|++ +
T Consensus        34 ~~~l~~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~  109 (226)
T 3m33_A           34 PELTFDLWLSRLLTPQ--TRVLEAGCGHGPDAARFGPQAARWA--AYDFSPELLKLARANAPHADVYEWNGKGELPAGLG  109 (226)
T ss_dssp             TTHHHHHHHHHHCCTT--CEEEEESCTTSHHHHHHGGGSSEEE--EEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCC
T ss_pred             HHHHHHHHHHhcCCCC--CeEEEeCCCCCHHHHHHHHcCCEEE--EEECCHHHHHHHHHhCCCceEEEcchhhccCCcCC
Confidence            3344444443  3444  5899999999999999999987765  58999999999988732 35556666 789998 9


Q ss_pred             CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEE
Q 037675          325 NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       325 ~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      ++||+|++..      +..   .++.++.|+|||||+++........+    .+...++..||+.+...
T Consensus       110 ~~fD~v~~~~------~~~---~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~l~~~Gf~~~~~~  165 (226)
T 3m33_A          110 APFGLIVSRR------GPT---SVILRLPELAAPDAHFLYVGPRLNVP----EVPERLAAVGWDIVAED  165 (226)
T ss_dssp             CCEEEEEEES------CCS---GGGGGHHHHEEEEEEEEEEESSSCCT----HHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEEeCC------CHH---HHHHHHHHHcCCCcEEEEeCCcCCHH----HHHHHHHHCCCeEEEEE
Confidence            9999999971      222   77889999999999997222222222    36777889999877644

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.43  E-value=2.4e-13  Score=122.85  Aligned_cols=101  Identities=15%  Similarity=0.127  Sum_probs=82.4

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      .+|||+|||+|.++..+++.+. .++  ++|+++.+++.++++.    -+.+..++...+|+++++||+|++..++++..
T Consensus        44 ~~vLdiGcG~G~~~~~l~~~~~~~v~--~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~  121 (215)
T 2pxx_A           44 DRILVLGCGNSALSYELFLGGFPNVT--SVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALL  121 (215)
T ss_dssp             CCEEEETCTTCSHHHHHHHTTCCCEE--EEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHT
T ss_pred             CeEEEECCCCcHHHHHHHHcCCCcEE--EEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhhc
Confidence            5899999999999999999875 443  5799999999988763    23556678888899999999999988776432


Q ss_pred             ------------ChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          341 ------------QPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       341 ------------~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                                  .......++.++.|+|||||++++.++.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A          122 AGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             TTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence                        1345679999999999999999888764

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.42  E-value=7.4e-13  Score=125.26  Aligned_cols=129  Identities=16%  Similarity=0.161  Sum_probs=93.2

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHH------hHHHHHHc----CC---Cceeecc---cC
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAP------YSEFIAAR----GL---FPLYLSL---DH  318 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~------~l~~a~eR----Gl---i~~~~~~---~e  318 (418)
                      +.+.++  .+|||||||+|.++..++++ |  ..++  ++|+++.      |++.++++    ++   +.+..++   ..
T Consensus        39 ~~~~~~--~~vLDiGcG~G~~~~~l~~~~g~~~~v~--gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  114 (275)
T 3bkx_A           39 WQVKPG--EKILEIGCGQGDLSAVLADQVGSSGHVT--GIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDD  114 (275)
T ss_dssp             HTCCTT--CEEEEESCTTSHHHHHHHHHHCTTCEEE--EECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTC
T ss_pred             cCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEE--EEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhc
Confidence            345555  48999999999999999987 4  5664  4788876      88777654    32   2344455   56


Q ss_pred             CCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch--------------------------
Q 037675          319 RFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND--------------------------  372 (418)
Q Consensus       319 ~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e--------------------------  372 (418)
                      .+|+++++||+|++..++++..++.   .++..+.++++|||++++.+......                          
T Consensus       115 ~~~~~~~~fD~v~~~~~l~~~~~~~---~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (275)
T 3bkx_A          115 LGPIADQHFDRVVLAHSLWYFASAN---ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVA  191 (275)
T ss_dssp             CGGGTTCCCSEEEEESCGGGSSCHH---HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTC
T ss_pred             cCCCCCCCEEEEEEccchhhCCCHH---HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccc
Confidence            7788899999999999999987765   55666666666799999876422100                          


Q ss_pred             -----hHHHHHHHHHHHcCcEEEEEE
Q 037675          373 -----EKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       373 -----e~~~~~~~l~~~~Gfk~l~W~  393 (418)
                           ...+.+..++++.||+.++..
T Consensus       192 ~~~~~~s~~~l~~~l~~aGf~~~~~~  217 (275)
T 3bkx_A          192 NIRTLITPDTLAQIAHDNTWTYTAGT  217 (275)
T ss_dssp             SCCCCCCHHHHHHHHHHHTCEEEECC
T ss_pred             cccccCCHHHHHHHHHHCCCeeEEEE
Confidence                 012467888999999988643

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.42  E-value=1.3e-13  Score=135.25  Aligned_cols=100  Identities=15%  Similarity=0.180  Sum_probs=73.8

Q ss_pred             CeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHc----CC--------Cceeeccc------CCC--CCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAAR----GL--------FPLYLSLD------HRF--PFYD  324 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eR----Gl--------i~~~~~~~------e~L--Pf~d  324 (418)
                      .+|||||||+|.....++..+ ..++  ++|+|+.|++.|+++    +.        +.+...++      +.+  ++++
T Consensus        50 ~~VLDlGCG~G~~l~~~~~~~~~~v~--GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           50 RKVLAIDFGNGADLEKYFYGEIALLV--ATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             CEEEETTCTTTTTHHHHHHTTCSEEE--EEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CeEEEEecCCcHhHHHHHhcCCCeEE--EEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            589999999998666666554 4554  589999999988775    32        11223333      333  4678


Q ss_pred             CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          325 NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       325 ~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ++||+|.|..++|+.-+......+|.++.|+|||||+|+++.+
T Consensus       128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            8999999999998642323456999999999999999988765

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.40  E-value=1.5e-12  Score=112.85  Aligned_cols=138  Identities=17%  Similarity=0.215  Sum_probs=95.3

Q ss_pred             CeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC--------CCCCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP--------FYDNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP--------f~d~sFDlV~s~~  334 (418)
                      .+|||+|||+|.++..+++. +  ..++  ++|+++ +++.    .-+.+..++...++        +++++||+|++..
T Consensus        24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~--~~D~~~-~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~   96 (180)
T 1ej0_A           24 MTVVDLGAAPGGWSQYVVTQIGGKGRII--ACDLLP-MDPI----VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDM   96 (180)
T ss_dssp             CEEEEESCTTCHHHHHHHHHHCTTCEEE--EEESSC-CCCC----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CeEEEeCCCCCHHHHHHHHHhCCCCeEE--EEECcc-cccc----CcEEEEEcccccchhhhhhhccCCCCceeEEEECC
Confidence            48999999999999999887 3  5554  468777 6543    22345566777776        7789999999998


Q ss_pred             cCcCCCChh--H------HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceE
Q 037675          335 GLDVGGQPE--K------LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVY  406 (418)
Q Consensus       335 ~L~~~~~~~--~------le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~  406 (418)
                      .+++.....  .      ...++.++.|+|||||.+++..+.....   ..+...++.. |+.+.+...........+.|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  172 (180)
T 1ej0_A           97 APNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGF---DEYLREIRSL-FTKVKVRKPDSSRARSREVY  172 (180)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTH---HHHHHHHHHH-EEEEEEECCTTSCTTCCEEE
T ss_pred             CccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcH---HHHHHHHHHh-hhhEEeecCCcccccCceEE
Confidence            887665431  1      1488999999999999998877644322   1233444443 77776543332223456888


Q ss_pred             EEEEEEcC
Q 037675          407 LSAVLQKP  414 (418)
Q Consensus       407 l~Ai~qKP  414 (418)
                      +.+...||
T Consensus       173 ~~~~~~~~  180 (180)
T 1ej0_A          173 IVATGRKP  180 (180)
T ss_dssp             EEEEEECC
T ss_pred             EEEccCCC
Confidence            88887776

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.40  E-value=8.8e-13  Score=117.23  Aligned_cols=107  Identities=14%  Similarity=0.107  Sum_probs=84.7

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC--CCceeecccCCCCC---CCCccceEEecC
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG--LFPLYLSLDHRFPF---YDNVFDLVHASS  334 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG--li~~~~~~~e~LPf---~d~sFDlV~s~~  334 (418)
                      +++|  .+|||+|||.           +     .+|+++.|++.|+++.  .+.+..++.+.+|+   ++++||+|++..
T Consensus        10 ~~~g--~~vL~~~~g~-----------v-----~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~   71 (176)
T 2ld4_A           10 ISAG--QFVAVVWDKS-----------S-----PVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGL   71 (176)
T ss_dssp             CCTT--SEEEEEECTT-----------S-----CHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECC
T ss_pred             CCCC--CEEEEecCCc-----------e-----eeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECC
Confidence            4455  5999999996           1     2699999999998874  24666778888887   899999999999


Q ss_pred             cCcCC-CChhHHHHHHHHhhccccCCcEEEEEecccCch------hHHHHHHHHHHHcCc
Q 037675          335 GLDVG-GQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND------EKKSALTRLIERFGY  387 (418)
Q Consensus       335 ~L~~~-~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e------e~~~~~~~l~~~~Gf  387 (418)
                      ++|+. .+..   .+|.|+.|+|||||+|++.++.....      ...+.+..+++..||
T Consensus        72 ~l~~~~~~~~---~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           72 VPGSTTLHSA---EILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             STTCCCCCCH---HHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             hhhhcccCHH---HHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence            99988 5543   89999999999999999976632210      113568899999999

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.40  E-value=2.6e-12  Score=113.16  Aligned_cols=124  Identities=21%  Similarity=0.243  Sum_probs=89.1

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CCC-c-eeeccc-CCCCCCCCccc
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GLF-P-LYLSLD-HRFPFYDNVFD  328 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gli-~-~~~~~~-e~LPf~d~sFD  328 (418)
                      +.+.++  .+|||+|||+|.++..+++.  +..++  ++|+++.+++.++++    |+. . .+.++. +.+|..+++||
T Consensus        21 ~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D   96 (178)
T 3hm2_A           21 LAPKPH--ETLWDIGGGSGSIAIEWLRSTPQTTAV--CFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPD   96 (178)
T ss_dssp             HCCCTT--EEEEEESTTTTHHHHHHHTTSSSEEEE--EECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCS
T ss_pred             hcccCC--CeEEEeCCCCCHHHHHHHHHCCCCeEE--EEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCC
Confidence            344444  48999999999999999987  44553  589999999988764    442 1 334443 44554448999


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEc
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVG  395 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~  395 (418)
                      +|++...+++       ..++.++.|+|||||++++.....   +....+..+++..|++..+..+.
T Consensus        97 ~i~~~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  153 (178)
T 3hm2_A           97 VIFIGGGLTA-------PGVFAAAWKRLPVGGRLVANAVTV---ESEQMLWALRKQFGGTISSFAIS  153 (178)
T ss_dssp             EEEECC-TTC-------TTHHHHHHHTCCTTCEEEEEECSH---HHHHHHHHHHHHHCCEEEEEEEE
T ss_pred             EEEECCcccH-------HHHHHHHHHhcCCCCEEEEEeecc---ccHHHHHHHHHHcCCeeEEEEee
Confidence            9999988876       178899999999999998876543   22234667788888876655443

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.40  E-value=1.3e-12  Score=124.63  Aligned_cols=146  Identities=14%  Similarity=0.077  Sum_probs=93.8

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc----CCCceeec---ccCCCCCCCCccceE
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR----GLFPLYLS---LDHRFPFYDNVFDLV  330 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR----Gli~~~~~---~~e~LPf~d~sFDlV  330 (418)
                      .+++|.  +|||+|||+|.++.+|++. |.....+++|+++.|++.+.++    +.+..+.+   ..+..++.++++|+|
T Consensus        74 ~ikpG~--~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvV  151 (233)
T 4df3_A           74 PVKEGD--RILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGL  151 (233)
T ss_dssp             CCCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEE
T ss_pred             CCCCCC--EEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEE
Confidence            356774  9999999999999999986 4322214579999999877653    22222333   334567788999999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC------chhHHHHHHHHHHHcCcEEEEEEEcccCCCCccc
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA------NDEKKSALTRLIERFGYKKLKWVVGEKGETGKSE  404 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~------~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e  404 (418)
                      ++...  +.   .+.+.++.++.|+|||||+++|......      .++.-+.....++..||+.+.-.....  -.+++
T Consensus       152 f~d~~--~~---~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L~p--f~~~H  224 (233)
T 4df3_A          152 YADVA--QP---EQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDP--FDRDH  224 (233)
T ss_dssp             EECCC--CT---THHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEECTT--TSTTE
T ss_pred             EEecc--CC---hhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEccCC--CCCce
Confidence            87432  22   2345899999999999999988754222      112223334557788998775322211  13456


Q ss_pred             eEEEEEEEc
Q 037675          405 VYLSAVLQK  413 (418)
Q Consensus       405 ~~l~Ai~qK  413 (418)
                      ..+.++++|
T Consensus       225 ~lv~~~~rR  233 (233)
T 4df3_A          225 AMIYAVMRR  233 (233)
T ss_dssp             EEEEECC--
T ss_pred             EEEEEEEeC
Confidence            666666553

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.40  E-value=1.2e-12  Score=128.44  Aligned_cols=124  Identities=15%  Similarity=0.110  Sum_probs=93.9

Q ss_pred             CCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecC
Q 037675          264 GIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      ...+|||+|||+|.++..++++  +..++  ++|+ +.+++.++++    ++   +.+..++.. .|++. .||+|++.+
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~--~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~  243 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGT--VLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSA  243 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEE--EEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEES
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEE--EecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEeh
Confidence            3469999999999999999886  45543  4699 9899877653    43   344555554 35555 899999999


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc------------------hhHHHHHHHHHHHcCcEEEEEE
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN------------------DEKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~------------------ee~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      ++|+|.++ ....+|.++.|+|||||+++|.+.....                  +...++|..++++.||+.++..
T Consensus       244 vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  319 (332)
T 3i53_A          244 VLHDWDDL-SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAH  319 (332)
T ss_dssp             CGGGSCHH-HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             hhccCCHH-HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence            99999764 3458999999999999999998763321                  1124679999999999998743

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.39  E-value=3.4e-12  Score=115.04  Aligned_cols=134  Identities=15%  Similarity=0.144  Sum_probs=92.6

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCC-CCCCccc
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFP-FYDNVFD  328 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LP-f~d~sFD  328 (418)
                      +.++  .+|||+|||+|.++..++++ +  ..++  ++|+++.+++.++++    |+   +.++.++.+.++ +.+++||
T Consensus        20 ~~~~--~~vLDlGcG~G~~~~~l~~~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD   95 (197)
T 3eey_A           20 VKEG--DTVVDATCGNGNDTAFLASLVGENGRVF--GFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVK   95 (197)
T ss_dssp             CCTT--CEEEESCCTTSHHHHHHHHHHCTTCEEE--EECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEE
T ss_pred             CCCC--CEEEEcCCCCCHHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCce
Confidence            4555  48999999999999999886 2  3443  579999999887664    33   345567777776 6779999


Q ss_pred             eEEecCcCcC------CCChhHHHHHHHHhhccccCCcEEEEEecccC--chhHHHHHHHHHH---HcCcEEEEEEEccc
Q 037675          329 LVHASSGLDV------GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA--NDEKKSALTRLIE---RFGYKKLKWVVGEK  397 (418)
Q Consensus       329 lV~s~~~L~~------~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~--~ee~~~~~~~l~~---~~Gfk~l~W~~~~k  397 (418)
                      +|++...+..      .........++.++.|+|||||++++..+...  ..+..+.+...++   ..+|+..++....+
T Consensus        96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~  175 (197)
T 3eey_A           96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQ  175 (197)
T ss_dssp             EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTC
T ss_pred             EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccC
Confidence            9999765521      12233455799999999999999988875432  1222233444443   44588777776554

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.39  E-value=7.3e-12  Score=111.87  Aligned_cols=118  Identities=16%  Similarity=0.125  Sum_probs=89.8

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCCh---
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQP---  342 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~---  342 (418)
                      .+|||+|||+|.++..|++++ .++  ++|+++.|++.   ..-+.+..++... ++++++||+|+++..+++..+.   
T Consensus        25 ~~vLD~GcG~G~~~~~l~~~~-~v~--gvD~s~~~~~~---~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~   97 (170)
T 3q87_B           25 KIVLDLGTSTGVITEQLRKRN-TVV--STDLNIRALES---HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPII   97 (170)
T ss_dssp             CEEEEETCTTCHHHHHHTTTS-EEE--EEESCHHHHHT---CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTT
T ss_pred             CeEEEeccCccHHHHHHHhcC-cEE--EEECCHHHHhc---ccCCeEEECChhh-hcccCCCCEEEECCCCccCCccccc
Confidence            489999999999999999998 554  68999999987   3334667777766 7778999999999888765433   


Q ss_pred             ---hHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEE
Q 037675          343 ---EKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       343 ---~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                         .+...++.++.+.| |||.+++.......   .+.+.+++++.||+......
T Consensus        98 ~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~---~~~l~~~l~~~gf~~~~~~~  148 (170)
T 3q87_B           98 GGGYLGREVIDRFVDAV-TVGMLYLLVIEANR---PKEVLARLEERGYGTRILKV  148 (170)
T ss_dssp             BCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGC---HHHHHHHHHHTTCEEEEEEE
T ss_pred             cCCcchHHHHHHHHhhC-CCCEEEEEEecCCC---HHHHHHHHHHCCCcEEEEEe
Confidence               11126788999999 99999887653322   23477888999998776433

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.39  E-value=2.2e-12  Score=124.84  Aligned_cols=106  Identities=11%  Similarity=0.021  Sum_probs=82.0

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCC-----CCCccceEE
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPF-----YDNVFDLVH  331 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf-----~d~sFDlV~  331 (418)
                      .+.+.++  .+|||+|||+|.++..|++++..|+  ++|+|+.|++.++++-.........+.++.     .+++||+|+
T Consensus        40 ~l~l~~g--~~VLDlGcGtG~~a~~La~~g~~V~--gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv  115 (261)
T 3iv6_A           40 LENIVPG--STVAVIGASTRFLIEKALERGASVT--VFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVL  115 (261)
T ss_dssp             TTTCCTT--CEEEEECTTCHHHHHHHHHTTCEEE--EEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEE
T ss_pred             hcCCCCc--CEEEEEeCcchHHHHHHHhcCCEEE--EEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEE
Confidence            3345554  5899999999999999999987764  589999999999887432223333444433     267999999


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      +..+++|+.. .+...++.++.|+| |||.++++...
T Consensus       116 ~~~~l~~~~~-~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          116 NDRLINRFTT-EEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             EESCGGGSCH-HHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             EhhhhHhCCH-HHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            9999998754 45678999999999 99999998653

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.39  E-value=1.4e-12  Score=128.70  Aligned_cols=138  Identities=14%  Similarity=0.177  Sum_probs=99.8

Q ss_pred             CCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCC-CCCCccceEEecC
Q 037675          265 IRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFP-FYDNVFDLVHASS  334 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LP-f~d~sFDlV~s~~  334 (418)
                      ..+|||||||+|.++..++++  +..++  ++|+ +.+++.++++    ++   +.+..++....+ ++++.||+|++..
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~--~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~  256 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQ--IWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLND  256 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEE--EEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEES
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEE--EEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEec
Confidence            469999999999999999987  45554  4688 6787766543    43   344556666554 2566799999999


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-----------------------hhHHHHHHHHHHHcCcEEEE
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-----------------------DEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-----------------------ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      ++|+|.+. ....+|.++.|+|||||+++|.+.....                       +...++|..++++.||+.+.
T Consensus       257 vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~  335 (352)
T 3mcz_A          257 CLHYFDAR-EAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE  335 (352)
T ss_dssp             CGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred             ccccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceee
Confidence            99999654 3568999999999999999887753211                       11236799999999999886


Q ss_pred             EEEcccCCCCccceEEEEEEEcCC
Q 037675          392 WVVGEKGETGKSEVYLSAVLQKPV  415 (418)
Q Consensus       392 W~~~~k~d~~~~e~~l~Ai~qKP~  415 (418)
                      -..+        . +...+.+||-
T Consensus       336 ~~~g--------~-~~l~~a~kp~  350 (352)
T 3mcz_A          336 RSIG--------R-YTLLIGQRSS  350 (352)
T ss_dssp             EEET--------T-EEEEEEECCC
T ss_pred             eccC--------c-eEEEEEecCC
Confidence            3221        1 3355678884

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.39  E-value=1.4e-12  Score=128.22  Aligned_cols=136  Identities=13%  Similarity=0.128  Sum_probs=92.4

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHcCC-Ccee-ecccCCCC---CCCCccceEEecCcCcCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAARGL-FPLY-LSLDHRFP---FYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eRGl-i~~~-~~~~e~LP---f~d~sFDlV~s~~~L~~~  339 (418)
                      ++|||+|||||.|+..|+++|. .|  +++|+++.|++.+..+.. +..+ ..++..++   ++..+||+|.+..+|++.
T Consensus        87 ~~vLDiGcGTG~~t~~L~~~ga~~V--~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~sl  164 (291)
T 3hp7_A           87 MITIDIGASTGGFTDVMLQNGAKLV--YAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFISL  164 (291)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCSEE--EEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSCG
T ss_pred             cEEEecCCCccHHHHHHHhCCCCEE--EEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhhH
Confidence            5899999999999999999875 45  368999999988655432 1111 12232332   344579999998888754


Q ss_pred             CChhHHHHHHHHhhccccCCcEEEEE---ecccCc-----------h----hHHHHHHHHHHHcCcEEEEEEEcccCCCC
Q 037675          340 GQPEKLEFLMFDFDRILRAGGLFWLD---NFYCAN-----------D----EKKSALTRLIERFGYKKLKWVVGEKGETG  401 (418)
Q Consensus       340 ~~~~~le~~L~Ei~RVLRPGG~~ii~---~~~~~~-----------e----e~~~~~~~l~~~~Gfk~l~W~~~~k~d~~  401 (418)
                            ..+|.|+.|+|||||.+++.   .|-...           +    ...+.+..+++.+||+...+...+...++
T Consensus       165 ------~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g~~  238 (291)
T 3hp7_A          165 ------NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGGH  238 (291)
T ss_dssp             ------GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCCGG
T ss_pred             ------HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Confidence                  37899999999999999776   221110           1    12245778889999998887765544433


Q ss_pred             ccceEEEE
Q 037675          402 KSEVYLSA  409 (418)
Q Consensus       402 ~~e~~l~A  409 (418)
                      .+.-|+..
T Consensus       239 gn~e~l~~  246 (291)
T 3hp7_A          239 GNIEFLAH  246 (291)
T ss_dssp             GCCCEEEE
T ss_pred             cCHHHHHH
Confidence            44445443

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.39  E-value=7.1e-12  Score=113.94  Aligned_cols=117  Identities=21%  Similarity=0.221  Sum_probs=86.8

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccce
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFDL  329 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFDl  329 (418)
                      +.+.++  .+|||+|||+|.++..+++.+  ..++  ++|+++.+++.++++    |+  +.+..++........++||+
T Consensus        36 l~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~  111 (204)
T 3e05_A           36 LRLQDD--LVMWDIGAGSASVSIEASNLMPNGRIF--ALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDR  111 (204)
T ss_dssp             TTCCTT--CEEEEETCTTCHHHHHHHHHCTTSEEE--EEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSE
T ss_pred             cCCCCC--CEEEEECCCCCHHHHHHHHHCCCCEEE--EEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCE
Confidence            344544  589999999999999999886  5554  589999999887664    43  24455555444334478999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCc
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGY  387 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gf  387 (418)
                      |++...++      ..+.++.++.|+|||||++++.....   +..+.+..++++.||
T Consensus       112 i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~l~~~g~  160 (204)
T 3e05_A          112 VFIGGSGG------MLEEIIDAVDRRLKSEGVIVLNAVTL---DTLTKAVEFLEDHGY  160 (204)
T ss_dssp             EEESCCTT------CHHHHHHHHHHHCCTTCEEEEEECBH---HHHHHHHHHHHHTTC
T ss_pred             EEECCCCc------CHHHHHHHHHHhcCCCeEEEEEeccc---ccHHHHHHHHHHCCC
Confidence            99987765      23489999999999999998876543   223457778899998

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.38  E-value=2.8e-12  Score=127.36  Aligned_cols=125  Identities=18%  Similarity=0.280  Sum_probs=95.3

Q ss_pred             CCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecC
Q 037675          264 GIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      ...+|||||||+|.++..++++  +..++  ++|+ +.+++.++++    |+   +.+..++....|+++.  |+|++..
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~--~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~  264 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHFPELDST--ILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCR  264 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHCTTCEEE--EEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEES
T ss_pred             CCCEEEEECCcccHHHHHHHHHCCCCeEE--EEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEec
Confidence            3469999999999999999987  45554  4799 8899887664    44   3455677777777654  9999999


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC-------------------c-h----hHHHHHHHHHHHcCcEEE
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA-------------------N-D----EKKSALTRLIERFGYKKL  390 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-------------------~-e----e~~~~~~~l~~~~Gfk~l  390 (418)
                      ++|+|.+ +....+|.++.|+|||||+++|.++...                   + +    ...++|.+++++.||+.+
T Consensus       265 vlh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v  343 (359)
T 1x19_A          265 ILYSANE-QLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDV  343 (359)
T ss_dssp             CGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEE
T ss_pred             hhccCCH-HHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceE
Confidence            9999965 3356899999999999999988774211                   1 1    223568999999999988


Q ss_pred             EEEE
Q 037675          391 KWVV  394 (418)
Q Consensus       391 ~W~~  394 (418)
                      ++..
T Consensus       344 ~~~~  347 (359)
T 1x19_A          344 TMVR  347 (359)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7544

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.38  E-value=5.2e-12  Score=118.39  Aligned_cols=117  Identities=18%  Similarity=0.161  Sum_probs=86.4

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCC---CCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFY---DNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~---d~sFDlV~s~~  334 (418)
                      .+|||+|||+|.++..|+..  +..++  ++|+++.|++.++++    |+  +.++.++++.+++.   +++||+|++..
T Consensus        72 ~~vLDiG~G~G~~~~~la~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~  149 (240)
T 1xdz_A           72 NTICDVGAGAGFPSLPIKICFPHLHVT--IVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (240)
T ss_dssp             CEEEEECSSSCTTHHHHHHHCTTCEEE--EEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CEEEEecCCCCHHHHHHHHhCCCCEEE--EEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence            58999999999999999853  55553  579999999877653    54  34566777777764   68999999966


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEE
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W  392 (418)
                      +    .+   +..++.++.|+|||||++++.......++. +.+...++.+||+....
T Consensus       150 ~----~~---~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~-~~~~~~l~~~g~~~~~~  199 (240)
T 1xdz_A          150 V----AR---LSVLSELCLPLVKKNGLFVALKAASAEEEL-NAGKKAITTLGGELENI  199 (240)
T ss_dssp             C----SC---HHHHHHHHGGGEEEEEEEEEEECC-CHHHH-HHHHHHHHHTTEEEEEE
T ss_pred             c----CC---HHHHHHHHHHhcCCCCEEEEEeCCCchHHH-HHHHHHHHHcCCeEeEE
Confidence            2    22   448999999999999999876433322332 34667788999987653

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.38  E-value=2.4e-12  Score=120.22  Aligned_cols=98  Identities=23%  Similarity=0.299  Sum_probs=78.1

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccceEEecCc-CcC
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFDLVHASSG-LDV  338 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFDlV~s~~~-L~~  338 (418)
                      ..+|||+|||+|.++..|++++..++  ++|+++.|++.++++    +. +.+..++...++++ ++||+|++... +++
T Consensus        42 ~~~vLDlGcG~G~~~~~l~~~~~~v~--gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~  118 (252)
T 1wzn_A           42 VRRVLDLACGTGIPTLELAERGYEVV--GLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY  118 (252)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTCEEE--EEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred             CCEEEEeCCCCCHHHHHHHHCCCeEE--EEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhc
Confidence            35899999999999999999987765  589999999887654    33 35566777778765 68999998744 444


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      . +......++.++.|+|||||.++++.
T Consensus       119 ~-~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          119 F-DEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             S-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             C-CHHHHHHHHHHHHHHcCCCeEEEEec
Confidence            3 45567799999999999999998753

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.38  E-value=2.2e-12  Score=125.85  Aligned_cols=125  Identities=14%  Similarity=0.172  Sum_probs=96.3

Q ss_pred             CCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCc
Q 037675          265 IRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSG  335 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~  335 (418)
                      ..+|||+|||+|.++..++++  +..++  ++|++ .+++.++++    |+   +.+..++....|++++ ||+|++..+
T Consensus       166 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~--~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~  241 (335)
T 2r3s_A          166 PLKVLDISASHGLFGIAVAQHNPNAEIF--GVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNF  241 (335)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCEEE--EEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESC
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEE--EEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcch
Confidence            359999999999999999987  55554  47998 888877664    43   3455567776677665 999999999


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-----------------------hhHHHHHHHHHHHcCcEEEEE
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-----------------------DEKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-----------------------ee~~~~~~~l~~~~Gfk~l~W  392 (418)
                      +|++.++ ....+|.++.|+|||||++++.++....                       ....++|..++++.||+.+++
T Consensus       242 l~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~  320 (335)
T 2r3s_A          242 LHHFDVA-TCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQL  320 (335)
T ss_dssp             GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             hccCCHH-HHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeE
Confidence            9998643 4568999999999999999887763321                       011467899999999998875


Q ss_pred             EE
Q 037675          393 VV  394 (418)
Q Consensus       393 ~~  394 (418)
                      ..
T Consensus       321 ~~  322 (335)
T 2r3s_A          321 HS  322 (335)
T ss_dssp             EC
T ss_pred             EE
Confidence            43

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.37  E-value=9.9e-13  Score=127.86  Aligned_cols=100  Identities=13%  Similarity=0.102  Sum_probs=80.5

Q ss_pred             CeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHcC-------------CCceeecccCCCC----CC--CC
Q 037675          266 RIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAARG-------------LFPLYLSLDHRFP----FY--DN  325 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eRG-------------li~~~~~~~e~LP----f~--d~  325 (418)
                      .+|||+|||+|.++..+++.+ ..++  ++|+++.|++.++++.             -+.+..++++.++    ++  ++
T Consensus        36 ~~VLDlGcG~G~~~~~l~~~~~~~v~--gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  113 (313)
T 3bgv_A           36 ITVLDLGCGKGGDLLKWKKGRINKLV--CTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM  113 (313)
T ss_dssp             CEEEEETCTTTTTHHHHHHTTCSEEE--EEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred             CEEEEECCCCcHHHHHHHhcCCCEEE--EEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence            589999999999999998764 4443  5799999998887651             1244567777776    64  45


Q ss_pred             ccceEEecCcCcCC-CChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          326 VFDLVHASSGLDVG-GQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       326 sFDlV~s~~~L~~~-~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +||+|++..++|+. .+..+...+|.++.|+|||||++++..+
T Consensus       114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            99999999999886 5666677999999999999999998865

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.37  E-value=1.5e-12  Score=121.40  Aligned_cols=100  Identities=19%  Similarity=0.054  Sum_probs=79.6

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC---CceeecccCCCCCCC-----CccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL---FPLYLSLDHRFPFYD-----NVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl---i~~~~~~~e~LPf~d-----~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++..|++.+..++  ++|+++.+++.++++..   +.+..++...+++..     ..||+|++..+++
T Consensus        58 ~~vLD~GcG~G~~~~~la~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~  135 (245)
T 3ggd_A           58 LPLIDFACGNGTQTKFLSQFFPRVI--GLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFH  135 (245)
T ss_dssp             SCEEEETCTTSHHHHHHHHHSSCEE--EEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSST
T ss_pred             CeEEEEcCCCCHHHHHHHHhCCCEE--EEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchhh
Confidence            5899999999999999999876554  47999999999988632   344556776665432     2499999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      +..+ .+...++.++.|+|||||++++.++.
T Consensus       136 ~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          136 HIPV-EKRELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             TSCG-GGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             cCCH-HHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            8853 34569999999999999998888763

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.37  E-value=8.2e-12  Score=137.08  Aligned_cols=144  Identities=15%  Similarity=0.088  Sum_probs=106.2

Q ss_pred             CeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHc----------CC--CceeecccCCCCCCCCccceE
Q 037675          266 RIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAAR----------GL--FPLYLSLDHRFPFYDNVFDLV  330 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eR----------Gl--i~~~~~~~e~LPf~d~sFDlV  330 (418)
                      .+|||+|||+|.++..|++++   ..++  ++|+++.|++.|+++          |+  +.++.++...+|+.+++||+|
T Consensus       723 ~rVLDVGCGTG~lai~LAr~g~p~a~Vt--GVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV  800 (950)
T 3htx_A          723 STLVDFGCGSGSLLDSLLDYPTSLQTII--GVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG  800 (950)
T ss_dssp             SEEEEETCSSSHHHHHHTSSCCCCCEEE--EEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred             CEEEEECCCCCHHHHHHHHhCCCCCeEE--EEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence            589999999999999999986   5664  589999999988762          33  355668999999999999999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC-----------------------------------chhHH
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA-----------------------------------NDEKK  375 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-----------------------------------~ee~~  375 (418)
                      ++..+++|+.++ ....++.++.|+|||| .++|+.+...                                   .++.+
T Consensus       801 V~~eVLeHL~dp-~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~DHrFEWTReEFr  878 (950)
T 3htx_A          801 TCLEVIEHMEED-QACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHDHKFEWTREQFN  878 (950)
T ss_dssp             EEESCGGGSCHH-HHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCSCSSCSCCBCHHHHH
T ss_pred             EEeCchhhCChH-HHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccccccCcceeecHHHHH
Confidence            999999998754 3457899999999999 7778764210                                   01223


Q ss_pred             HHHHHHHHHcCcEEEEEEEcccCCCCccceEEEEEEEc
Q 037675          376 SALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQK  413 (418)
Q Consensus       376 ~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qK  413 (418)
                      .....+.++.||..---.++...++..+..-..||++|
T Consensus       879 ~Wae~LAer~GYsVefvGVGDg~ep~vG~~TQiAVFtR  916 (950)
T 3htx_A          879 QWASKLGKRHNYSVEFSGVGGSGEVEPGFASQIAIFRR  916 (950)
T ss_dssp             HHHHHHHHHTTEEEEEEEESSCSSSTTCCSEEEEEEEE
T ss_pred             HHHHHHHHhcCcEEEEEccCCCCCCCCCCccEEEEEEE
Confidence            33445888889976544455432223444445777776

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.37  E-value=1.1e-11  Score=109.73  Aligned_cols=118  Identities=13%  Similarity=0.205  Sum_probs=85.5

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC----CceeecccCCCCCCCCccceEEecCcC
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL----FPLYLSLDHRFPFYDNVFDLVHASSGL  336 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl----i~~~~~~~e~LPf~d~sFDlV~s~~~L  336 (418)
                      ..+|||+|||+|.++..+++.+..++  ++|+++.+++.++++    ++    +.+..++... ++++++||+|++...+
T Consensus        53 ~~~vLdiG~G~G~~~~~~~~~~~~v~--~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~  129 (194)
T 1dus_A           53 DDDILDLGCGYGVIGIALADEVKSTT--MADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPI  129 (194)
T ss_dssp             TCEEEEETCTTSHHHHHHGGGSSEEE--EEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCS
T ss_pred             CCeEEEeCCCCCHHHHHHHHcCCeEE--EEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEECCCc
Confidence            35899999999999999998876654  579999999887664    43    2344455544 4557899999998877


Q ss_pred             cCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      ++.  ......++.++.|+|||||++++..+.....   ..+...+++. |..+.
T Consensus       130 ~~~--~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~---~~~~~~l~~~-~~~~~  178 (194)
T 1dus_A          130 RAG--KEVLHRIIEEGKELLKDNGEIWVVIQTKQGA---KSLAKYMKDV-FGNVE  178 (194)
T ss_dssp             TTC--HHHHHHHHHHHHHHEEEEEEEEEEEESTHHH---HHHHHHHHHH-HSCCE
T ss_pred             ccc--hhHHHHHHHHHHHHcCCCCEEEEEECCCCCh---HHHHHHHHHH-hcceE
Confidence            652  3456789999999999999999887754321   2244445444 54444

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.36  E-value=4.5e-12  Score=118.06  Aligned_cols=119  Identities=17%  Similarity=0.157  Sum_probs=84.2

Q ss_pred             CeEEEECCccChHHHHHhhc-C-cEEEEeccCCCHHhHHHHHHcC----CCceeecccCC----CCCCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAER-N-VTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHR----FPFYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-g-V~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~----LPf~d~sFDlV~s~~~  335 (418)
                      .+|||+|||+|.++..|++. + ..++  ++|+++.+++.+.++-    -+.+..+++..    +++. ++||+|+.   
T Consensus        76 ~~VLDlGcG~G~~~~~la~~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~---  149 (230)
T 1fbn_A           76 SKILYLGASAGTTPSHVADIADKGIVY--AIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYE---  149 (230)
T ss_dssp             CEEEEESCCSSHHHHHHHHHTTTSEEE--EEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEE---
T ss_pred             CEEEEEcccCCHHHHHHHHHcCCcEEE--EEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEE---
Confidence            58999999999999999987 4 4553  5899999998876642    12344566666    7776 78999992   


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEec-ccCc-----hh-HHHHHHHHHHHcCcEEEEEE
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF-YCAN-----DE-KKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~-~~~~-----ee-~~~~~~~l~~~~Gfk~l~W~  393 (418)
                        +..++...+.++.++.|+|||||++++.-. .+..     .. ..+++. +++..||+.+...
T Consensus       150 --~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~  211 (230)
T 1fbn_A          150 --DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEV  211 (230)
T ss_dssp             --CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEE
T ss_pred             --ecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEE
Confidence              333443345789999999999999988621 1111     11 224566 7888999887654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.36  E-value=1.1e-11  Score=114.15  Aligned_cols=125  Identities=23%  Similarity=0.203  Sum_probs=90.9

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccce
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDL  329 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDl  329 (418)
                      .+.+.++  .+|||+|||+|.++..+++++..++  ++|+++.+++.|+++    |+   +.++.++..........||+
T Consensus        50 ~l~~~~~--~~vLDlGcG~G~~~~~la~~~~~v~--~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~  125 (204)
T 3njr_A           50 ALAPRRG--ELLWDIGGGSGSVSVEWCLAGGRAI--TIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEA  125 (204)
T ss_dssp             HHCCCTT--CEEEEETCTTCHHHHHHHHTTCEEE--EEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSE
T ss_pred             hcCCCCC--CEEEEecCCCCHHHHHHHHcCCEEE--EEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCE
Confidence            3445554  5899999999999999999876664  589999999887664    44   23455666663223457999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcc
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGE  396 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~  396 (418)
                      |++...+       ..+ ++.++.|+|||||++++.....   +....+.+.+++.||+...+.+..
T Consensus       126 v~~~~~~-------~~~-~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~l~~~g~~i~~i~~~~  181 (204)
T 3njr_A          126 VFIGGGG-------SQA-LYDRLWEWLAPGTRIVANAVTL---ESETLLTQLHARHGGQLLRIDIAQ  181 (204)
T ss_dssp             EEECSCC-------CHH-HHHHHHHHSCTTCEEEEEECSH---HHHHHHHHHHHHHCSEEEEEEEEE
T ss_pred             EEECCcc-------cHH-HHHHHHHhcCCCcEEEEEecCc---ccHHHHHHHHHhCCCcEEEEEeec
Confidence            9987644       234 8999999999999998876532   223446777888899877766543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.36  E-value=1.9e-11  Score=112.75  Aligned_cols=141  Identities=16%  Similarity=0.105  Sum_probs=95.3

Q ss_pred             CeEEEECCc-cChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCC-CCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGG-SGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHR-FPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCG-tG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~-LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+||| +|.++..+++. +..++  ++|+++.+++.++++    |+ +.++.++... .++++++||+|+++-.++
T Consensus        57 ~~vLDlG~G~~G~~~~~la~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~  134 (230)
T 3evz_A           57 EVALEIGTGHTAMMALMAEKFFNCKVT--ATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYY  134 (230)
T ss_dssp             CEEEEECCTTTCHHHHHHHHHHCCEEE--EEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEE--EEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCc
Confidence            589999999 99999999988 66664  579999999877653    43 3455555432 356679999999986554


Q ss_pred             CCCC----------------hhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCC
Q 037675          338 VGGQ----------------PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETG  401 (418)
Q Consensus       338 ~~~~----------------~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~  401 (418)
                      +..+                ......++.++.|+|||||++++..+..  .+..+.+..++++.||+........     
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~~~~-----  207 (230)
T 3evz_A          135 DKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK--EKLLNVIKERGIKLGYSVKDIKFKV-----  207 (230)
T ss_dssp             ---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC--HHHHHHHHHHHHHTTCEEEEEEECC-----
T ss_pred             CCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc--HhHHHHHHHHHHHcCCceEEEEecC-----
Confidence            4322                1223689999999999999998864432  2333457788899999655443321     


Q ss_pred             ccceEEEEEEEcCC
Q 037675          402 KSEVYLSAVLQKPV  415 (418)
Q Consensus       402 ~~e~~l~Ai~qKP~  415 (418)
                      ...+....+++|+.
T Consensus       208 g~~~~~~l~f~~~~  221 (230)
T 3evz_A          208 GTRWRHSLIFFKGI  221 (230)
T ss_dssp             CC-CEEEEEEECCC
T ss_pred             CCeEEEEEEEeccc
Confidence            12334455566653

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.36  E-value=5.4e-12  Score=126.31  Aligned_cols=124  Identities=16%  Similarity=0.184  Sum_probs=94.7

Q ss_pred             CCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecC
Q 037675          264 GIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      ...+|||+|||+|.++..++++  +..++  ++|+ +.+++.++++    |+   +.+..++.. .|++. .||+|++..
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~--~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~  276 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGT--LLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKH  276 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEE--EEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEES
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEE--EEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhh
Confidence            3469999999999999999987  45554  4799 8888877653    43   344555555 46665 899999999


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch--------------------hHHHHHHHHHHHcCcEEEEEE
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND--------------------EKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e--------------------e~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      ++|+|.+.. ...+|.++.|+|||||+++|.+......                    ...++|..++++.||+.++..
T Consensus       277 vlh~~~d~~-~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~  354 (369)
T 3gwz_A          277 VLHDWDDDD-VVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSL  354 (369)
T ss_dssp             CGGGSCHHH-HHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEE
T ss_pred             hhccCCHHH-HHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEE
Confidence            999996543 4479999999999999999987643220                    114679999999999998753

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.35  E-value=3.2e-12  Score=126.93  Aligned_cols=124  Identities=20%  Similarity=0.179  Sum_probs=91.2

Q ss_pred             CCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCc
Q 037675          265 IRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSG  335 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~  335 (418)
                      ..+|||||||+|.++..++++  ++.++  ++|+ +.+++.++++    |+   +.+..++... +++. .||+|++..+
T Consensus       183 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~--~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v  257 (374)
T 1qzz_A          183 VRHVLDVGGGNGGMLAAIALRAPHLRGT--LVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFV  257 (374)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEE--EEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESC
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCEEE--EEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEecc
Confidence            469999999999999999987  45554  4799 9999887663    43   3445555543 3444 3999999999


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEec--ccCch---------------------hHHHHHHHHHHHcCcEEEEE
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF--YCAND---------------------EKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~--~~~~e---------------------e~~~~~~~l~~~~Gfk~l~W  392 (418)
                      +|+|.+.. ...+|.++.|+|||||+++|.+.  .....                     ...++|..++++.||+.++.
T Consensus       258 l~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~  336 (374)
T 1qzz_A          258 LLNWSDED-ALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE  336 (374)
T ss_dssp             GGGSCHHH-HHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE
T ss_pred             ccCCCHHH-HHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEE
Confidence            99986543 35899999999999999988776  32110                     12356889999999998875


Q ss_pred             EE
Q 037675          393 VV  394 (418)
Q Consensus       393 ~~  394 (418)
                      ..
T Consensus       337 ~~  338 (374)
T 1qzz_A          337 RT  338 (374)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.35  E-value=2.5e-12  Score=128.93  Aligned_cols=124  Identities=13%  Similarity=0.125  Sum_probs=94.7

Q ss_pred             CCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675          264 GIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ  341 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~  341 (418)
                      ...+|||||||+|.++..++++  ++.++  ++|. +.+++.+.++.-+.+..++... |++++  |+|++..++|+|.+
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~--~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~  276 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAI--NFDL-PHVIQDAPAFSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSD  276 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEE--EEEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCH
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEE--EEeh-HHHHHhhhhcCCCEEEecCCCC-CCCCC--CEEEEechhhcCCH
Confidence            3569999999999999999986  45554  4788 8888777665444666666665 77655  99999999999975


Q ss_pred             hhHHHHHHHHhhccccCCcEEEEEecccCc--------------------------hhHHHHHHHHHHHcCcEEEEEEE
Q 037675          342 PEKLEFLMFDFDRILRAGGLFWLDNFYCAN--------------------------DEKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       342 ~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--------------------------ee~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      . ....+|.++.|+|||||+++|.+.....                          +...++|..+++++||+.++...
T Consensus       277 ~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~  354 (368)
T 3reo_A          277 E-HCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVAS  354 (368)
T ss_dssp             H-HHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEE
T ss_pred             H-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEE
Confidence            4 3458999999999999999987753211                          01135799999999999987543

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.34  E-value=1e-11  Score=114.11  Aligned_cols=121  Identities=17%  Similarity=0.242  Sum_probs=87.5

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCC--CCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFP--FYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LP--f~d~sFDlV~s~~~  335 (418)
                      .+|||+|||+|.++..+++.  +..++  ++|+++.+++.|+++    |+  +.++.++...++  +++++||+|++...
T Consensus        43 ~~vLDiGcG~G~~~~~la~~~p~~~v~--gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           43 PIHVEVGSGKGAFVSGMAKQNPDINYI--GIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEE--EEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CeEEEEccCcCHHHHHHHHHCCCCCEE--EEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            48999999999999999987  35554  579999999877653    44  345567777787  78899999999865


Q ss_pred             CcCCCChh-----HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          336 LDVGGQPE-----KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       336 L~~~~~~~-----~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      ..+.....     ..+.++.++.|+|||||.+++....   ....+.+.+.++..||+.+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~~~~~g~~~~~  178 (214)
T 1yzh_A          121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN---RGLFEYSLVSFSQYGMKLNG  178 (214)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC---HHHHHHHHHHHHHHTCEEEE
T ss_pred             CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC---HHHHHHHHHHHHHCCCeeee
Confidence            43221110     1237999999999999999886432   22234456677888998764

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.34  E-value=3.5e-12  Score=116.97  Aligned_cols=128  Identities=20%  Similarity=0.259  Sum_probs=89.1

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHH--------HcCC--CceeecccCCCCCCCCc
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIA--------ARGL--FPLYLSLDHRFPFYDNV  326 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~--------eRGl--i~~~~~~~e~LPf~d~s  326 (418)
                      .+.++  .+|||+|||+|.++..|+++  +..++  ++|+++.|++.+.        .+++  +.+..++++.+|+++++
T Consensus        24 ~~~~~--~~vLDiGcG~G~~~~~la~~~p~~~v~--gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~   99 (218)
T 3mq2_A           24 RSQYD--DVVLDVGTGDGKHPYKVARQNPSRLVV--ALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV   99 (218)
T ss_dssp             HTTSS--EEEEEESCTTCHHHHHHHHHCTTEEEE--EEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE
T ss_pred             hccCC--CEEEEecCCCCHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC
Confidence            34444  48999999999999999998  45554  5899999887532        1333  24556788999998888


Q ss_pred             cceEEecCc---C--cCCCChhHHHHHHHHhhccccCCcEEEEEeccc---------------CchhHHHHHHHHHHHcC
Q 037675          327 FDLVHASSG---L--DVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC---------------ANDEKKSALTRLIERFG  386 (418)
Q Consensus       327 FDlV~s~~~---L--~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~---------------~~ee~~~~~~~l~~~~G  386 (418)
                       |.|+....   +  ++..++   ..++.++.|+|||||.+++.....               ..+...+.+..+++..|
T Consensus       100 -d~v~~~~~~~~~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG  175 (218)
T 3mq2_A          100 -GELHVLMPWGSLLRGVLGSS---PEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAG  175 (218)
T ss_dssp             -EEEEEESCCHHHHHHHHTSS---SHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTT
T ss_pred             -CEEEEEccchhhhhhhhccH---HHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcC
Confidence             88874321   1  122222   389999999999999998864211               01122345888999999


Q ss_pred             cEEEEEEE
Q 037675          387 YKKLKWVV  394 (418)
Q Consensus       387 fk~l~W~~  394 (418)
                      |+...-..
T Consensus       176 f~i~~~~~  183 (218)
T 3mq2_A          176 WKLADCRY  183 (218)
T ss_dssp             EEEEEEEE
T ss_pred             CCceeeec
Confidence            99876544

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.33  E-value=3.2e-11  Score=111.90  Aligned_cols=93  Identities=16%  Similarity=0.137  Sum_probs=65.7

Q ss_pred             CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhH----HHHHHcCCCceeecccCC----CCCCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYS----EFIAARGLFPLYLSLDHR----FPFYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l----~~a~eRGli~~~~~~~e~----LPf~d~sFDlV~s~~~  335 (418)
                      .+|||+|||+|.++..|++..  ..+  +++|+++.|+    +.++++.-+..+.++...    .|+. ++||+|++.. 
T Consensus        59 ~~VLDlGcGtG~~~~~la~~~~~~~V--~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~-  134 (210)
T 1nt2_A           59 ERVLYLGAASGTTVSHLADIVDEGII--YAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQDI-  134 (210)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTTTSEE--EEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEECC-
T ss_pred             CEEEEECCcCCHHHHHHHHHcCCCEE--EEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEec-
Confidence            489999999999999998762  344  3589999765    444444323344455544    3454 8999999972 


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      .+    +...+.++.|+.|+|||||+|++..
T Consensus       135 ~~----~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          135 AQ----KNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             CS----TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cC----hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            22    2233466899999999999998874

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.32  E-value=2.7e-11  Score=114.89  Aligned_cols=133  Identities=10%  Similarity=0.074  Sum_probs=91.5

Q ss_pred             HHHHHccC-CCCCCeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCC--C
Q 037675          254 IDDVLALG-SGGIRIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFP--F  322 (418)
Q Consensus       254 I~~lL~l~-~g~~r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LP--f  322 (418)
                      +...+.+. ++  .+|||+|||+|.++..+++++. .+  +++|+++.+++.|+++    ++   +.++.++...++  +
T Consensus        40 l~~~~~~~~~~--~~vLDlG~G~G~~~~~la~~~~~~v--~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~  115 (259)
T 3lpm_A           40 LAKFSYLPIRK--GKIIDLCSGNGIIPLLLSTRTKAKI--VGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLI  115 (259)
T ss_dssp             HHHHCCCCSSC--CEEEETTCTTTHHHHHHHTTCCCEE--EEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTS
T ss_pred             HHHHhcCCCCC--CEEEEcCCchhHHHHHHHHhcCCcE--EEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhh
Confidence            34443444 44  5899999999999999998854 44  3589999999877653    44   345556666665  5


Q ss_pred             CCCccceEEecCcCcCC-----------------CChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHc
Q 037675          323 YDNVFDLVHASSGLDVG-----------------GQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERF  385 (418)
Q Consensus       323 ~d~sFDlV~s~~~L~~~-----------------~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~  385 (418)
                      ++++||+|+++-.+...                 .....++.++.++.|+|||||++++.....    ....+...++..
T Consensus       116 ~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~l~~~  191 (259)
T 3lpm_A          116 PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE----RLLDIIDIMRKY  191 (259)
T ss_dssp             CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT----THHHHHHHHHHT
T ss_pred             ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH----HHHHHHHHHHHC
Confidence            68999999996433211                 112456789999999999999998854322    223366678888


Q ss_pred             CcEEEEEEE
Q 037675          386 GYKKLKWVV  394 (418)
Q Consensus       386 Gfk~l~W~~  394 (418)
                      ||...+...
T Consensus       192 ~~~~~~~~~  200 (259)
T 3lpm_A          192 RLEPKRIQF  200 (259)
T ss_dssp             TEEEEEEEE
T ss_pred             CCceEEEEE
Confidence            898766443

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.31  E-value=1.8e-11  Score=113.86  Aligned_cols=120  Identities=14%  Similarity=0.201  Sum_probs=82.2

Q ss_pred             CeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhH----HHHHHcCCCceeecccCC---CCCCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYS----EFIAARGLFPLYLSLDHR---FPFYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l----~~a~eRGli~~~~~~~e~---LPf~d~sFDlV~s~~~  335 (418)
                      .+|||+|||+|.++..|+++ +  ..++  ++|+++.++    +.+.++.-+.+..++...   +|+.+++||+|++...
T Consensus        79 ~~vLDlG~G~G~~~~~la~~~g~~~~v~--gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~  156 (233)
T 2ipx_A           79 AKVLYLGAASGTTVSHVSDIVGPDGLVY--AVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA  156 (233)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTCEEE--EECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC
T ss_pred             CEEEEEcccCCHHHHHHHHHhCCCcEEE--EEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC
Confidence            58999999999999999987 2  4553  579997654    455554333555666655   5667889999999543


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEeccc---Cc---hh-HHHHHHHHHHHcCcEEEEEE
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC---AN---DE-KKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~---~~---ee-~~~~~~~l~~~~Gfk~l~W~  393 (418)
                           .+.....++.++.|+|||||+++++....   ..   .. ...+ ..+++..||+.+...
T Consensus       157 -----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~~~~  215 (233)
T 2ipx_A          157 -----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQEQL  215 (233)
T ss_dssp             -----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEEEEE
T ss_pred             -----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceEEEE
Confidence                 22233466889999999999998864421   01   11 1222 467788999988743

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.31  E-value=1.9e-12  Score=129.39  Aligned_cols=123  Identities=12%  Similarity=0.091  Sum_probs=92.9

Q ss_pred             CCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCCh
Q 037675          265 IRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQP  342 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~  342 (418)
                      ..+|||||||+|.++..++++.  +.+  +++|+ +.+++.+++..-+.+..++... |+++  ||+|++..++|+|.++
T Consensus       210 ~~~vLDvG~G~G~~~~~l~~~~~~~~~--~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d~  283 (372)
T 1fp1_D          210 ISTLVDVGGGSGRNLELIISKYPLIKG--INFDL-PQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSDE  283 (372)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEE--EEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEESSGGGSCHH
T ss_pred             CCEEEEeCCCCcHHHHHHHHHCCCCeE--EEeCh-HHHHHhhhhcCCCEEEeCCccc-CCCC--CCEEEEecccccCCHH
Confidence            4699999999999999999874  444  35788 8888776653334555666655 6665  9999999999999654


Q ss_pred             hHHHHHHHHhhccccCCcEEEEEecccCc-------------------------hhHHHHHHHHHHHcCcEEEEEEE
Q 037675          343 EKLEFLMFDFDRILRAGGLFWLDNFYCAN-------------------------DEKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       343 ~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-------------------------ee~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      . ...+|.++.|+|||||+++|.++....                         +...++|..++++.||+.+++..
T Consensus       284 ~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  359 (372)
T 1fp1_D          284 K-CIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVAC  359 (372)
T ss_dssp             H-HHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred             H-HHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence            3 458999999999999999988652210                         00135789999999999887543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.31  E-value=8.2e-12  Score=122.27  Aligned_cols=122  Identities=14%  Similarity=0.066  Sum_probs=92.8

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc-------CCCceeecccCCCCCCCCccceEEecCcC
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR-------GLFPLYLSLDHRFPFYDNVFDLVHASSGL  336 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR-------Gli~~~~~~~e~LPf~d~sFDlV~s~~~L  336 (418)
                      .+|||+|||+|.++..++++  +..++  ++|+ +.+++.++++       ..+.+..++... |++ +.||+|++..++
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~--~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl  243 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGV--MLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRII  243 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEE--EEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCG
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEE--EeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhc
Confidence            69999999999999999987  45553  4788 8888877664       223555566555 555 689999999999


Q ss_pred             cCCCChhHHHHHHHHhhccccCCcEEEEEecccCc---------------------hhHHHHHHHHHHHcCcEEEEEE
Q 037675          337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN---------------------DEKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~---------------------ee~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      |+|.+. ....++.++.|+|||||+++|.+.....                     +...++|..++++.||+.++..
T Consensus       244 ~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  320 (334)
T 2ip2_A          244 GDLDEA-ASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIV  320 (334)
T ss_dssp             GGCCHH-HHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred             cCCCHH-HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEE
Confidence            998643 4568999999999999999988753221                     0124678999999999988743

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.31  E-value=3.4e-12  Score=120.80  Aligned_cols=134  Identities=15%  Similarity=0.125  Sum_probs=85.2

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHcCCC-cee------ecccCCCC---CCCCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAARGLF-PLY------LSLDHRFP---FYDNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eRGli-~~~------~~~~e~LP---f~d~sFDlV~s~~  334 (418)
                      .+|||+|||+|.++..|++++. .++  ++|+++.|++.++++... ...      .-..+.++   +...+||+++++ 
T Consensus        39 ~~VLDiGcGtG~~t~~la~~g~~~V~--gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~-  115 (232)
T 3opn_A           39 KTCLDIGSSTGGFTDVMLQNGAKLVY--ALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS-  115 (232)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCSEEE--EECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC-
T ss_pred             CEEEEEccCCCHHHHHHHhcCCCEEE--EEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh-
Confidence            5899999999999999999985 554  589999999987775321 110      00112222   233455555432 


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEe-c-ccC------------ch----hHHHHHHHHHHHcCcEEEEEEEcc
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN-F-YCA------------ND----EKKSALTRLIERFGYKKLKWVVGE  396 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~-~-~~~------------~e----e~~~~~~~l~~~~Gfk~l~W~~~~  396 (418)
                          .      +.+|.|+.|+|||||++++.. + +..            ..    ...+.+..+++..||+.+.+....
T Consensus       116 ----l------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~p  185 (232)
T 3opn_A          116 ----L------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSP  185 (232)
T ss_dssp             ----G------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECS
T ss_pred             ----H------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEcc
Confidence                2      378999999999999998752 1 100            01    123568889999999988877654


Q ss_pred             cCCCCccceEEEEEEEc
Q 037675          397 KGETGKSEVYLSAVLQK  413 (418)
Q Consensus       397 k~d~~~~e~~l~Ai~qK  413 (418)
                      -.....+..|+. .++|
T Consensus       186 i~g~~gn~e~l~-~~~~  201 (232)
T 3opn_A          186 IKGGAGNVEFLV-HLLK  201 (232)
T ss_dssp             SCBTTTBCCEEE-EEEE
T ss_pred             CCCCCCCHHHHH-HHhh
Confidence            433223333333 2455

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.31  E-value=1.3e-11  Score=114.25  Aligned_cols=121  Identities=12%  Similarity=0.136  Sum_probs=84.9

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCC--CCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFP--FYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LP--f~d~sFDlV~s~~~  335 (418)
                      .+|||||||+|.++..|++.  +..++  ++|+++.+++.|.++    |+  +.++.+++..++  +++++||.|++...
T Consensus        40 ~~vLDiGcG~G~~~~~la~~~p~~~v~--giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           40 PIHIEVGTGKGQFISGMAKQNPDINYI--GIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEE--EECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             ceEEEEecCCCHHHHHHHHHCCCCCEE--EEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            48999999999999999987  45554  589999999877653    54  344556777776  78899999987644


Q ss_pred             CcCCCChh-----HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          336 LDVGGQPE-----KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       336 L~~~~~~~-----~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      ..+.....     ....++.++.|+|||||.+++....   ....+.....++..||+...
T Consensus       118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~---~~~~~~~~~~~~~~g~~~~~  175 (213)
T 2fca_A          118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN---RGLFEYSLKSFSEYGLLLTY  175 (213)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC---HHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC---HHHHHHHHHHHHHCCCcccc
Confidence            32221100     0247899999999999999886432   22223345566777887653

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.31  E-value=7.5e-12  Score=119.17  Aligned_cols=116  Identities=17%  Similarity=0.170  Sum_probs=87.9

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      .+|||+|||+|.++..+++.+..++  ++|+++.+++.++++    ++ +.+..++... ++++++||+|+++...+   
T Consensus       122 ~~VLDiGcG~G~l~~~la~~g~~v~--gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~~~---  195 (254)
T 2nxc_A          122 DKVLDLGTGSGVLAIAAEKLGGKAL--GVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAE---  195 (254)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEE--EEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHH---
T ss_pred             CEEEEecCCCcHHHHHHHHhCCeEE--EEECCHHHHHHHHHHHHHcCCcEEEEECChhh-cCcCCCCCEEEECCcHH---
Confidence            5899999999999999999887554  589999999877663    44 3444444433 24578999999975443   


Q ss_pred             ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEE
Q 037675          341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~  393 (418)
                         .+..++.++.|+|||||++++++.....   .+.+..+++..||+.+...
T Consensus       196 ---~~~~~l~~~~~~LkpgG~lils~~~~~~---~~~v~~~l~~~Gf~~~~~~  242 (254)
T 2nxc_A          196 ---LHAALAPRYREALVPGGRALLTGILKDR---APLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             ---HHHHHHHHHHHHEEEEEEEEEEEEEGGG---HHHHHHHHHHTTCEEEEEE
T ss_pred             ---HHHHHHHHHHHHcCCCCEEEEEeeccCC---HHHHHHHHHHCCCEEEEEe
Confidence               3458999999999999999998765432   3457788899999987643

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.30  E-value=7.4e-12  Score=123.81  Aligned_cols=124  Identities=20%  Similarity=0.183  Sum_probs=91.0

Q ss_pred             CCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCc
Q 037675          265 IRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSG  335 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~  335 (418)
                      ..+|||+|||+|.++..+++++  +.++  ++|+ +.+++.++++    |+   +.+..++... +++. .||+|++..+
T Consensus       184 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~--~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v  258 (360)
T 1tw3_A          184 VRHVLDVGGGKGGFAAAIARRAPHVSAT--VLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFV  258 (360)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEE--EEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESC
T ss_pred             CcEEEEeCCcCcHHHHHHHHhCCCCEEE--EecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEccc
Confidence            3599999999999999999873  5554  4787 7788776653    43   3444555433 3444 4999999999


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEecc-cCch---------------------hHHHHHHHHHHHcCcEEEEEE
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY-CAND---------------------EKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~-~~~e---------------------e~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      +|+|.+. ....++.++.|+|||||+++|.++. ....                     ...++|..++++.||+.+++.
T Consensus       259 l~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  337 (360)
T 1tw3_A          259 LLNWPDH-DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR  337 (360)
T ss_dssp             GGGSCHH-HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred             ccCCCHH-HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence            9998654 3357999999999999999888765 2110                     123578999999999988754


Q ss_pred             E
Q 037675          394 V  394 (418)
Q Consensus       394 ~  394 (418)
                      .
T Consensus       338 ~  338 (360)
T 1tw3_A          338 Q  338 (360)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.30  E-value=4e-12  Score=127.37  Aligned_cols=124  Identities=15%  Similarity=0.088  Sum_probs=95.3

Q ss_pred             CCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675          264 GIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ  341 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~  341 (418)
                      ...+|||||||+|.++..++++  ++.++  ++|. +.+++.++++.-+.+..++... |++++  |+|++..++|+|.+
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~--~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d  274 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGV--NFDL-PHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMKWILHDWSD  274 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEE--EEEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGSCH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEE--EecC-HHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEehHHhccCCH
Confidence            3469999999999999999986  45553  4788 8888777665444666677766 77765  99999999999975


Q ss_pred             hhHHHHHHHHhhccccCCcEEEEEecccCc--------------------------hhHHHHHHHHHHHcCcEEEEEEE
Q 037675          342 PEKLEFLMFDFDRILRAGGLFWLDNFYCAN--------------------------DEKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       342 ~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--------------------------ee~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      . ....+|.++.|+|||||+++|.+.....                          +...++|..++++.||+.++...
T Consensus       275 ~-~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~  352 (364)
T 3p9c_A          275 Q-HCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTY  352 (364)
T ss_dssp             H-HHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEE
T ss_pred             H-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence            4 4568999999999999999887753211                          01135799999999999987544

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.30  E-value=1.1e-11  Score=109.40  Aligned_cols=118  Identities=15%  Similarity=0.216  Sum_probs=85.1

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCC-Cccc
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYD-NVFD  328 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d-~sFD  328 (418)
                      .+.+.++  .+|||+|||+|.++..+++.+..++  ++|.++.+++.++++    ++   +.+..++... ++++ ++||
T Consensus        28 ~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~v~--~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D  102 (192)
T 1l3i_A           28 LAEPGKN--DVAVDVGCGTGGVTLELAGRVRRVY--AIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDID  102 (192)
T ss_dssp             HHCCCTT--CEEEEESCTTSHHHHHHHTTSSEEE--EEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEE
T ss_pred             hcCCCCC--CEEEEECCCCCHHHHHHHHhcCEEE--EEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCC
Confidence            3445544  5999999999999999998875543  579999999887763    33   2334444433 3333 5899


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcE
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYK  388 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk  388 (418)
                      +|++...+++.      ..++.++.++|||||++++..+..   +....+..++++.||.
T Consensus       103 ~v~~~~~~~~~------~~~l~~~~~~l~~gG~l~~~~~~~---~~~~~~~~~l~~~g~~  153 (192)
T 1l3i_A          103 IAVVGGSGGEL------QEILRIIKDKLKPGGRIIVTAILL---ETKFEAMECLRDLGFD  153 (192)
T ss_dssp             EEEESCCTTCH------HHHHHHHHHTEEEEEEEEEEECBH---HHHHHHHHHHHHTTCC
T ss_pred             EEEECCchHHH------HHHHHHHHHhcCCCcEEEEEecCc---chHHHHHHHHHHCCCc
Confidence            99998776532      489999999999999998876532   2233467788888983

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.29  E-value=1.5e-12  Score=117.40  Aligned_cols=120  Identities=14%  Similarity=0.099  Sum_probs=73.2

Q ss_pred             CCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCC-----CccceEEe
Q 037675          265 IRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYD-----NVFDLVHA  332 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d-----~sFDlV~s  332 (418)
                      ..+|||+|||+|.++..+++.  +..++  ++|+++.+++.++++    +. +.+..++... ++++     ++||+|++
T Consensus        31 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~  107 (215)
T 4dzr_A           31 GTRVIDVGTGSGCIAVSIALACPGVSVT--AVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVS  107 (215)
T ss_dssp             TEEEEEEESSBCHHHHHHHHHCTTEEEE--EEECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEEE
T ss_pred             CCEEEEecCCHhHHHHHHHHhCCCCeEE--EEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEE
Confidence            358999999999999999988  44554  589999999877664    21 2344455444 5665     89999999


Q ss_pred             cCcCcCCCCh-----------------------hHHHHHHHHhhccccCCcE-EEEEecccCchhHHHHHHHHHH--HcC
Q 037675          333 SSGLDVGGQP-----------------------EKLEFLMFDFDRILRAGGL-FWLDNFYCANDEKKSALTRLIE--RFG  386 (418)
Q Consensus       333 ~~~L~~~~~~-----------------------~~le~~L~Ei~RVLRPGG~-~ii~~~~~~~ee~~~~~~~l~~--~~G  386 (418)
                      +-.++.....                       ..+..++.++.|+|||||+ +++.......    +.+..+++  ..|
T Consensus       108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~l~~~~~g  183 (215)
T 4dzr_A          108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQA----DEVARLFAPWRER  183 (215)
T ss_dssp             CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCH----HHHHHHTGGGGGG
T ss_pred             CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccH----HHHHHHHHHhhcC
Confidence            6444322110                       0115889999999999999 5555443322    33666777  888


Q ss_pred             cEEEE
Q 037675          387 YKKLK  391 (418)
Q Consensus       387 fk~l~  391 (418)
                      |..+.
T Consensus       184 f~~~~  188 (215)
T 4dzr_A          184 GFRVR  188 (215)
T ss_dssp             TEECC
T ss_pred             CceEE
Confidence            97765

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.29  E-value=5.9e-12  Score=125.30  Aligned_cols=106  Identities=13%  Similarity=0.111  Sum_probs=78.1

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYD  324 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d  324 (418)
                      .|.+.+.+.++  .+|||+|||+|.++..+++.|. .++  ++|+++ |++.|+++    |+   +.++.++.+.+++++
T Consensus        55 ~i~~~~~~~~~--~~VLDiGcGtG~ls~~la~~g~~~v~--gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  129 (340)
T 2fyt_A           55 FIYQNPHIFKD--KVVLDVGCGTGILSMFAAKAGAKKVL--GVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV  129 (340)
T ss_dssp             HHHHCGGGTTT--CEEEEETCTTSHHHHHHHHTTCSEEE--EEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC
T ss_pred             HHHhhhhhcCC--CEEEEeeccCcHHHHHHHHcCCCEEE--EEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCC
Confidence            34343344444  4899999999999999999874 554  578885 88776553    33   355667888999998


Q ss_pred             CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEE
Q 037675          325 NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFW  363 (418)
Q Consensus       325 ~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~i  363 (418)
                      ++||+|++..+.........++.++.++.|+|||||.++
T Consensus       130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            999999997632222223455689999999999999986

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.29  E-value=1.5e-11  Score=121.85  Aligned_cols=123  Identities=15%  Similarity=0.095  Sum_probs=86.8

Q ss_pred             CCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHH--HcCC---CceeecccCCCCCCCCccceEEecCcCc
Q 037675          265 IRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIA--ARGL---FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~--eRGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      ..+|||||||+|.++..++++  ++.+  +++|. +.++..++  +.++   +.+..++.. .+++  +||+|++..++|
T Consensus       185 ~~~vLDvG~G~G~~~~~l~~~~p~~~~--~~~D~-~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~vlh  258 (348)
T 3lst_A          185 TGTVADVGGGRGGFLLTVLREHPGLQG--VLLDR-AEVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRILH  258 (348)
T ss_dssp             SEEEEEETCTTSHHHHHHHHHCTTEEE--EEEEC-HHHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESCGG
T ss_pred             CceEEEECCccCHHHHHHHHHCCCCEE--EEecC-HHHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehhcc
Confidence            469999999999999999986  3444  34787 34433110  1122   234445553 3444  899999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccCc---------------------hhHHHHHHHHHHHcCcEEEEEEE
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN---------------------DEKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~---------------------ee~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      +|.+.+ ...+|.++.|+|||||+++|.+.....                     +...++|..++++.||+.++...
T Consensus       259 ~~~d~~-~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  335 (348)
T 3lst_A          259 NWGDED-SVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVG  335 (348)
T ss_dssp             GSCHHH-HHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCCHHH-HHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence            997652 358999999999999999998753221                     01246799999999999987543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.29  E-value=1.9e-11  Score=116.30  Aligned_cols=139  Identities=10%  Similarity=0.062  Sum_probs=84.4

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhH----HHHHHcCCCceeecccCCCC---CCCCccce
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYS----EFIAARGLFPLYLSLDHRFP---FYDNVFDL  329 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l----~~a~eRGli~~~~~~~e~LP---f~d~sFDl  329 (418)
                      +.+|  .+|||+|||+|.++..+++. +  -.|  +++|+++.|+    +.++++.-+..+.+++...+   ...++||+
T Consensus        74 l~~g--~~VLDlG~GtG~~t~~la~~v~~~G~V--~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~  149 (232)
T 3id6_C           74 IRKG--TKVLYLGAASGTTISHVSDIIELNGKA--YGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDV  149 (232)
T ss_dssp             CCTT--CEEEEETCTTSHHHHHHHHHHTTTSEE--EEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEE
T ss_pred             CCCC--CEEEEEeecCCHHHHHHHHHhCCCCEE--EEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEE
Confidence            4455  58999999999999999875 2  244  3579999775    44555543345556554432   22568999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec-cc-----CchhHHHHHHHHHHHcCcEEEEEEEcccCCCCcc
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF-YC-----ANDEKKSALTRLIERFGYKKLKWVVGEKGETGKS  403 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~-~~-----~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~  403 (418)
                      |++...+   .  ...+.++..+.|+|||||+|+++-. .|     ..++..+.....++..||+.++-...+.  -.++
T Consensus       150 I~~d~a~---~--~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p--~~~~  222 (232)
T 3id6_C          150 LYVDIAQ---P--DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDP--YDKD  222 (232)
T ss_dssp             EEECCCC---T--THHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTT--TCSS
T ss_pred             EEecCCC---h--hHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCC--CcCc
Confidence            9997554   1  2222445566779999999988732 12     1122222344556677998876333221  1345


Q ss_pred             ceEEEE
Q 037675          404 EVYLSA  409 (418)
Q Consensus       404 e~~l~A  409 (418)
                      +..+.+
T Consensus       223 h~~v~~  228 (232)
T 3id6_C          223 HAIVLS  228 (232)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            655543

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.28  E-value=3.8e-11  Score=118.26  Aligned_cols=135  Identities=15%  Similarity=0.163  Sum_probs=94.3

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFY  323 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~  323 (418)
                      .+..++.+.+|  .+|||+|||+|..+..|++.   +..++  ++|+++.+++.++++    |+  +.+..+++..++..
T Consensus       109 l~~~~l~~~~g--~~VLDlg~G~G~~t~~la~~~~~~~~v~--avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~  184 (315)
T 1ixk_A          109 YPPVALDPKPG--EIVADMAAAPGGKTSYLAQLMRNDGVIY--AFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL  184 (315)
T ss_dssp             HHHHHHCCCTT--CEEEECCSSCSHHHHHHHHHTTTCSEEE--EECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG
T ss_pred             HHHHHhCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEE--EEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccc
Confidence            34455666666  48999999999999999975   23443  579999999877654    54  23445677777666


Q ss_pred             CCccceEEec------CcCcCCC------ChhH-------HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHH
Q 037675          324 DNVFDLVHAS------SGLDVGG------QPEK-------LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIER  384 (418)
Q Consensus       324 d~sFDlV~s~------~~L~~~~------~~~~-------le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~  384 (418)
                      +++||+|++.      .+++...      ...+       ...+|.++.++|||||+++++......++.++.+..++++
T Consensus       185 ~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~  264 (315)
T 1ixk_A          185 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDN  264 (315)
T ss_dssp             CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhc
Confidence            7899999984      2233211      1111       1488999999999999998877644445555667788888


Q ss_pred             cCcEEEE
Q 037675          385 FGYKKLK  391 (418)
Q Consensus       385 ~Gfk~l~  391 (418)
                      .+|+.+.
T Consensus       265 ~~~~~~~  271 (315)
T 1ixk_A          265 FDVELLP  271 (315)
T ss_dssp             SSEEEEC
T ss_pred             CCCEEec
Confidence            8887654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.28  E-value=3.8e-11  Score=114.95  Aligned_cols=136  Identities=14%  Similarity=0.198  Sum_probs=92.5

Q ss_pred             CcHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCC
Q 037675          249 KNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRF  320 (418)
Q Consensus       249 ~y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~L  320 (418)
                      .+..+++.++..-.....+|||+|||+|.++..+++.  +..++  ++|+++.+++.++++    |+  +.+..++... 
T Consensus        94 ~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~--~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~-  170 (276)
T 2b3t_A           94 DTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEII--AVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-  170 (276)
T ss_dssp             THHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEE--EECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-
T ss_pred             hHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHHHHcCCCceEEEEcchhh-
Confidence            3455555555431122358999999999999999865  44553  579999999887664    44  3444455443 


Q ss_pred             CCCCCccceEEecCcCcCC-------------CC---------hhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHH
Q 037675          321 PFYDNVFDLVHASSGLDVG-------------GQ---------PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSAL  378 (418)
Q Consensus       321 Pf~d~sFDlV~s~~~L~~~-------------~~---------~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~  378 (418)
                      ++++++||+|+++-.++..             ..         ......++.++.++|||||++++...+...    +.+
T Consensus       171 ~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~----~~~  246 (276)
T 2b3t_A          171 ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQG----EAV  246 (276)
T ss_dssp             GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCH----HHH
T ss_pred             hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHH----HHH
Confidence            3457899999997433322             11         034568999999999999999887654433    336


Q ss_pred             HHHHHHcCcEEEE
Q 037675          379 TRLIERFGYKKLK  391 (418)
Q Consensus       379 ~~l~~~~Gfk~l~  391 (418)
                      ..+++..||+.+.
T Consensus       247 ~~~l~~~Gf~~v~  259 (276)
T 2b3t_A          247 RQAFILAGYHDVE  259 (276)
T ss_dssp             HHHHHHTTCTTCC
T ss_pred             HHHHHHCCCcEEE
Confidence            7778889998664

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.27  E-value=2.4e-11  Score=121.27  Aligned_cols=124  Identities=12%  Similarity=0.130  Sum_probs=91.9

Q ss_pred             CCCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHcC------CCceeecccCCCCCCCCccceEEecC
Q 037675          263 GGIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAARG------LFPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       263 g~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eRG------li~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      ...++|+|||||+|.++..++++.  +.++  ..|. +.+++.++++-      -+.+..++...-|.+  .+|+|++.+
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~--~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~  252 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKIT--VFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILAR  252 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEE--EEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEES
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeE--eccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeee
Confidence            345699999999999999999884  4443  3565 77888776641      234445555444444  479999999


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc----------------------hhHHHHHHHHHHHcCcEEEEE
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN----------------------DEKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~----------------------ee~~~~~~~l~~~~Gfk~l~W  392 (418)
                      +||.|.+.+ ...+|.++.++|||||.++|.+.....                      +...++|..+++++||+.++.
T Consensus       253 vlh~~~d~~-~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v  331 (353)
T 4a6d_A          253 VLHDWADGK-CSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQF  331 (353)
T ss_dssp             SGGGSCHHH-HHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEE
T ss_pred             ecccCCHHH-HHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEE
Confidence            999997653 457899999999999999888763321                      112467999999999999874

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.27  E-value=5.6e-11  Score=111.06  Aligned_cols=119  Identities=14%  Similarity=0.073  Sum_probs=87.3

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc-----CC--CceeecccCCCCCCCCcc
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR-----GL--FPLYLSLDHRFPFYDNVF  327 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR-----Gl--i~~~~~~~e~LPf~d~sF  327 (418)
                      +.+.++  .+|||+|||+|.++..+++.   +..++  ++|.++.+++.++++     |.  +.+..++...+|+++++|
T Consensus        92 ~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~--~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~  167 (258)
T 2pwy_A           92 LDLAPG--MRVLEAGTGSGGLTLFLARAVGEKGLVE--SYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAY  167 (258)
T ss_dssp             TTCCTT--CEEEEECCTTSHHHHHHHHHHCTTSEEE--EEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCE
T ss_pred             cCCCCC--CEEEEECCCcCHHHHHHHHHhCCCCEEE--EEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCc
Confidence            344554  48999999999999999987   45554  579999999887765     52  344556777778888999


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      |+|++.     ..++.   .++.++.++|||||++++..+..  +.. ..+...++..||..+.
T Consensus       168 D~v~~~-----~~~~~---~~l~~~~~~L~~gG~l~~~~~~~--~~~-~~~~~~l~~~gf~~~~  220 (258)
T 2pwy_A          168 DGVALD-----LMEPW---KVLEKAALALKPDRFLVAYLPNI--TQV-LELVRAAEAHPFRLER  220 (258)
T ss_dssp             EEEEEE-----SSCGG---GGHHHHHHHEEEEEEEEEEESCH--HHH-HHHHHHHTTTTEEEEE
T ss_pred             CEEEEC-----CcCHH---HHHHHHHHhCCCCCEEEEEeCCH--HHH-HHHHHHHHHCCCceEE
Confidence            999983     23333   78899999999999998876533  222 2355556778998653

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.27  E-value=1.5e-11  Score=110.59  Aligned_cols=100  Identities=19%  Similarity=0.184  Sum_probs=77.1

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCC--CCCCccceEEecCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFP--FYDNVFDLVHASSGL  336 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LP--f~d~sFDlV~s~~~L  336 (418)
                      .+|||+|||+|.++..+++++. .+  +++|+++.+++.++++    ++  +.++.+++..++  +++++||+|++...+
T Consensus        46 ~~vLDlgcG~G~~~~~~~~~~~~~v--~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~  123 (189)
T 3p9n_A           46 LAVLDLYAGSGALGLEALSRGAASV--LFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY  123 (189)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCSEE--EEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred             CEEEEeCCCcCHHHHHHHHCCCCeE--EEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence            5899999999999998888864 34  3589999999877653    43  345566665553  457899999998776


Q ss_pred             cCCCChhHHHHHHHHhhc--cccCCcEEEEEeccc
Q 037675          337 DVGGQPEKLEFLMFDFDR--ILRAGGLFWLDNFYC  369 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~R--VLRPGG~~ii~~~~~  369 (418)
                      ++.  ....+.++.++.+  +|||||++++.....
T Consensus       124 ~~~--~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          124 NVD--SADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             TSC--HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             Ccc--hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            653  2456689999999  999999999987643

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.27  E-value=4.2e-11  Score=114.72  Aligned_cols=117  Identities=15%  Similarity=0.089  Sum_probs=86.1

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc-----CC--CceeecccCCCCCCCCccc
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR-----GL--FPLYLSLDHRFPFYDNVFD  328 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR-----Gl--i~~~~~~~e~LPf~d~sFD  328 (418)
                      .+.++  .+|||+|||+|.++..+++.   +..++  ++|+++.+++.++++     |.  +.+..++... ++++++||
T Consensus       107 ~~~~~--~~VLD~G~G~G~~~~~la~~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD  181 (275)
T 1yb2_A          107 GLRPG--MDILEVGVGSGNMSSYILYALNGKGTLT--VVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYD  181 (275)
T ss_dssp             CCCTT--CEEEEECCTTSHHHHHHHHHHTTSSEEE--EECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEE
T ss_pred             CCCCc--CEEEEecCCCCHHHHHHHHHcCCCCEEE--EEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCcc
Confidence            34444  58999999999999999986   55554  579999999887764     43  2344456655 67788999


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      +|++     +..++.   .++.++.++|||||++++..+...   ..+.+...++..||+.++
T Consensus       182 ~Vi~-----~~~~~~---~~l~~~~~~LkpgG~l~i~~~~~~---~~~~~~~~l~~~Gf~~~~  233 (275)
T 1yb2_A          182 AVIA-----DIPDPW---NHVQKIASMMKPGSVATFYLPNFD---QSEKTVLSLSASGMHHLE  233 (275)
T ss_dssp             EEEE-----CCSCGG---GSHHHHHHTEEEEEEEEEEESSHH---HHHHHHHHSGGGTEEEEE
T ss_pred             EEEE-----cCcCHH---HHHHHHHHHcCCCCEEEEEeCCHH---HHHHHHHHHHHCCCeEEE
Confidence            9998     233333   789999999999999988876431   223456667788998776

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.27  E-value=9.7e-12  Score=116.75  Aligned_cols=124  Identities=15%  Similarity=0.170  Sum_probs=79.4

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCC-HHhHHHH---HH----cCC--CceeecccCCCCCC-CCccceEEe
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVD-APYSEFI---AA----RGL--FPLYLSLDHRFPFY-DNVFDLVHA  332 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s-~~~l~~a---~e----RGl--i~~~~~~~e~LPf~-d~sFDlV~s  332 (418)
                      .+|||||||+|.++..|+++  +..++  ++|+| +.|++.|   ++    .|+  +.+..++++.+|.. .+.+|.|++
T Consensus        26 ~~vLDiGCG~G~~~~~la~~~~~~~v~--GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~  103 (225)
T 3p2e_A           26 RVHIDLGTGDGRNIYKLAINDQNTFYI--GIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI  103 (225)
T ss_dssp             EEEEEETCTTSHHHHHHHHTCTTEEEE--EECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred             CEEEEEeccCcHHHHHHHHhCCCCEEE--EEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence            48999999999999999954  45554  58999 7787776   33    244  23445778888632 244555554


Q ss_pred             cCcCcCCCCh-----hHHHHHHHHhhccccCCcEEEEEecccC---------------c-hhHH-HHHHHHHHHcCcEEE
Q 037675          333 SSGLDVGGQP-----EKLEFLMFDFDRILRAGGLFWLDNFYCA---------------N-DEKK-SALTRLIERFGYKKL  390 (418)
Q Consensus       333 ~~~L~~~~~~-----~~le~~L~Ei~RVLRPGG~~ii~~~~~~---------------~-ee~~-~~~~~l~~~~Gfk~l  390 (418)
                      ..   +|...     .....+|.|+.|+|||||++++......               . +... +++.++++..||+..
T Consensus       104 ~~---~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~  180 (225)
T 3p2e_A          104 LF---PWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRID  180 (225)
T ss_dssp             ES---CCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEE
T ss_pred             eC---CCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCee
Confidence            32   22211     0112689999999999999988221110               0 0111 238889999999977


Q ss_pred             EEEE
Q 037675          391 KWVV  394 (418)
Q Consensus       391 ~W~~  394 (418)
                      ....
T Consensus       181 ~~~~  184 (225)
T 3p2e_A          181 DVKE  184 (225)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            6544

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.26  E-value=8.1e-12  Score=123.82  Aligned_cols=122  Identities=14%  Similarity=0.134  Sum_probs=92.2

Q ss_pred             CCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCCh
Q 037675          265 IRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQP  342 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~  342 (418)
                      ..+|||||||+|.++..++++  +..++  ++|+ +.+++.+++..-+.+..++... ++++  ||+|++..++|+|.+.
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~--~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d~  262 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETFPKLKCI--VFDR-PQVVENLSGSNNLTYVGGDMFT-SIPN--ADAVLLKYILHNWTDK  262 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEE--EEEC-HHHHTTCCCBTTEEEEECCTTT-CCCC--CSEEEEESCGGGSCHH
T ss_pred             CceEEEeCCCccHHHHHHHHHCCCCeEE--EeeC-HHHHhhcccCCCcEEEeccccC-CCCC--ccEEEeehhhccCCHH
Confidence            359999999999999999986  45554  4799 8888877654324555566544 5553  9999999999999654


Q ss_pred             hHHHHHHHHhhccccC---CcEEEEEecccCch------------------------hHHHHHHHHHHHcCcEEEEEE
Q 037675          343 EKLEFLMFDFDRILRA---GGLFWLDNFYCAND------------------------EKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       343 ~~le~~L~Ei~RVLRP---GG~~ii~~~~~~~e------------------------e~~~~~~~l~~~~Gfk~l~W~  393 (418)
                       ....+|.++.|+|||   ||+++|.++.....                        ...++|..++++.||+.++..
T Consensus       263 -~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~  339 (352)
T 1fp2_A          263 -DCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKIS  339 (352)
T ss_dssp             -HHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred             -HHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEE
Confidence             345899999999999   99998887632210                        113578999999999988743

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.26  E-value=2.1e-11  Score=115.26  Aligned_cols=92  Identities=22%  Similarity=0.309  Sum_probs=76.4

Q ss_pred             CCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675          265 IRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ  341 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~  341 (418)
                      ..+|||+|||+|.++..+++.  +..++  ++|+++.+++.+++++. +.+..++.+.+|+++++||+|++..+.     
T Consensus        86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~-----  158 (269)
T 1p91_A           86 ATAVLDIGCGEGYYTHAFADALPEITTF--GLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP-----  158 (269)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTCTTSEEE--EEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCeEE--EEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence            358999999999999999987  56654  57999999999988763 345667888999999999999986542     


Q ss_pred             hhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          342 PEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       342 ~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                           .++.|+.|+|||||++++..+.
T Consensus       159 -----~~l~~~~~~L~pgG~l~~~~~~  180 (269)
T 1p91_A          159 -----CKAEELARVVKPGGWVITATPG  180 (269)
T ss_dssp             -----CCHHHHHHHEEEEEEEEEEEEC
T ss_pred             -----hhHHHHHHhcCCCcEEEEEEcC
Confidence                 3467999999999999888764

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.26  E-value=3.6e-12  Score=127.17  Aligned_cols=98  Identities=16%  Similarity=0.213  Sum_probs=76.1

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++..+++.+. .++  ++|++ +|++.|++    .|+   +.++.++.+.+++++++||+|++..+.+
T Consensus        68 ~~VLDvGcG~G~~~~~la~~g~~~v~--gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~  144 (349)
T 3q7e_A           68 KVVLDVGSGTGILCMFAAKAGARKVI--GIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY  144 (349)
T ss_dssp             CEEEEESCTTSHHHHHHHHTTCSEEE--EEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred             CEEEEEeccchHHHHHHHHCCCCEEE--EECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccc
Confidence            4899999999999999999975 554  57988 48876654    354   3556788999999999999999976544


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      .......++.++.++.|+|||||+++...
T Consensus       145 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~  173 (349)
T 3q7e_A          145 CLFYESMLNTVLHARDKWLAPDGLIFPDR  173 (349)
T ss_dssp             TBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             cccCchhHHHHHHHHHHhCCCCCEEcccc
Confidence            33333445689999999999999986443

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.25  E-value=2.8e-11  Score=115.36  Aligned_cols=118  Identities=15%  Similarity=0.093  Sum_probs=86.1

Q ss_pred             CCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCC---CCccceEEec
Q 037675          265 IRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFY---DNVFDLVHAS  333 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~---d~sFDlV~s~  333 (418)
                      ..+|||||||+|..+..|+..  +..++  ++|+++.++++++++    |+  +.+++++++.++..   +++||+|++.
T Consensus        81 ~~~vLDiG~G~G~~~i~la~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           81 PLRVLDLGTGAGFPGLPLKIVRPELELV--LVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             SCEEEEETCTTTTTHHHHHHHCTTCEEE--EEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            358999999999999999876  44553  579999999877653    55  34556777777653   5899999996


Q ss_pred             CcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEE
Q 037675          334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W  392 (418)
                      .+-       .+..++.++.|+|||||+|++.......++. +.+...++.+||+....
T Consensus       159 a~~-------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~-~~~~~~l~~~G~~~~~~  209 (249)
T 3g89_A          159 AVA-------PLCVLSELLLPFLEVGGAAVAMKGPRVEEEL-APLPPALERLGGRLGEV  209 (249)
T ss_dssp             SSC-------CHHHHHHHHGGGEEEEEEEEEEECSCCHHHH-TTHHHHHHHHTEEEEEE
T ss_pred             CcC-------CHHHHHHHHHHHcCCCeEEEEEeCCCcHHHH-HHHHHHHHHcCCeEEEE
Confidence            532       2348899999999999998775433333333 33667788899987653

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.25  E-value=1.8e-11  Score=118.23  Aligned_cols=102  Identities=10%  Similarity=0.028  Sum_probs=78.1

Q ss_pred             CCeEEEECCcc---ChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CCCceeecccCCCC-----------CCC
Q 037675          265 IRIGFDIGGGS---GTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GLFPLYLSLDHRFP-----------FYD  324 (418)
Q Consensus       265 ~r~VLDvGCGt---G~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gli~~~~~~~e~LP-----------f~d  324 (418)
                      .++|||||||+   |.++..+.+.  +..++  ++|+++.|++.++++    +.+.++.++....+           ++.
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~--~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~  155 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVV--YVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF  155 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEE--EEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEE--EEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence            57999999999   9888777654  45554  479999999988875    22344555554321           223


Q ss_pred             CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675          325 NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC  369 (418)
Q Consensus       325 ~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~  369 (418)
                      .+||+|++..+||++.+. ....+|.++.|+|||||+|++.++..
T Consensus       156 ~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          156 SRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             TSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             CCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            489999999999998764 45689999999999999999988754

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.24  E-value=9.5e-11  Score=102.87  Aligned_cols=117  Identities=15%  Similarity=0.158  Sum_probs=85.8

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccceE
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFDLV  330 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFDlV  330 (418)
                      .+.+.++  .+|||+|||+|.++..+++.+..++  ++|+++.+++.++++    |+  +.+..++... ++++++||+|
T Consensus        30 ~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i  104 (183)
T 2yxd_A           30 KLNLNKD--DVVVDVGCGSGGMTVEIAKRCKFVY--AIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKA  104 (183)
T ss_dssp             HHCCCTT--CEEEEESCCCSHHHHHHHTTSSEEE--EEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEE
T ss_pred             HcCCCCC--CEEEEeCCCCCHHHHHHHhcCCeEE--EEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEE
Confidence            3444444  4899999999999999998666664  479999999887664    43  3444555555 6777899999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL  390 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l  390 (418)
                      ++..+    .   ..+.++.++.|+  |||++++..+..   +....+...++..||+..
T Consensus       105 ~~~~~----~---~~~~~l~~~~~~--~gG~l~~~~~~~---~~~~~~~~~l~~~g~~~~  152 (183)
T 2yxd_A          105 FIGGT----K---NIEKIIEILDKK--KINHIVANTIVL---ENAAKIINEFESRGYNVD  152 (183)
T ss_dssp             EECSC----S---CHHHHHHHHHHT--TCCEEEEEESCH---HHHHHHHHHHHHTTCEEE
T ss_pred             EECCc----c---cHHHHHHHHhhC--CCCEEEEEeccc---ccHHHHHHHHHHcCCeEE
Confidence            99877    2   234889999999  999998887532   222346778888897543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.23  E-value=2.2e-11  Score=120.10  Aligned_cols=99  Identities=11%  Similarity=0.168  Sum_probs=74.5

Q ss_pred             HHccCCCCCCeEEEECCccChHHHH-Hhhc-CcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccc
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAAR-MAER-NVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFD  328 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~-La~~-gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFD  328 (418)
                      ++.+.+|  .+|||||||+|.+++. +++. +..++  ++|+++.|++.|+++    |+  +.+..+++..+|  +++||
T Consensus       117 la~l~~g--~rVLDIGcG~G~~ta~~lA~~~ga~V~--gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FD  190 (298)
T 3fpf_A          117 LGRFRRG--ERAVFIGGGPLPLTGILLSHVYGMRVN--VVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFD  190 (298)
T ss_dssp             HTTCCTT--CEEEEECCCSSCHHHHHHHHTTCCEEE--EEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCS
T ss_pred             HcCCCCc--CEEEEECCCccHHHHHHHHHccCCEEE--EEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcC
Confidence            3456666  4999999999987754 4443 66664  589999999988765    55  344557777765  79999


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +|++...   ..+   .+.++.|+.|+|||||++++...
T Consensus       191 vV~~~a~---~~d---~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          191 VLMVAAL---AEP---KRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             EEEECTT---CSC---HHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             EEEECCC---ccC---HHHHHHHHHHHcCCCcEEEEEcC
Confidence            9998654   233   34899999999999999988764

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.23  E-value=1.4e-11  Score=121.85  Aligned_cols=109  Identities=17%  Similarity=0.174  Sum_probs=79.2

Q ss_pred             HHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCC
Q 037675          251 DFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPF  322 (418)
Q Consensus       251 ~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf  322 (418)
                      ...|.+.+.+.++  .+|||+|||+|.++..+++.+. .++  ++|.+ +|++.|++    .|+   +.++.++.+.+++
T Consensus        27 ~~ai~~~~~~~~~--~~VLDiGcGtG~ls~~la~~g~~~v~--~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  101 (328)
T 1g6q_1           27 RNAIIQNKDLFKD--KIVLDVGCGTGILSMFAAKHGAKHVI--GVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHL  101 (328)
T ss_dssp             HHHHHHHHHHHTT--CEEEEETCTTSHHHHHHHHTCCSEEE--EEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCC
T ss_pred             HHHHHhhHhhcCC--CEEEEecCccHHHHHHHHHCCCCEEE--EEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccC
Confidence            3344333444444  4899999999999999999875 454  57888 57776654    344   3456678888998


Q ss_pred             CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEE
Q 037675          323 YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWL  364 (418)
Q Consensus       323 ~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii  364 (418)
                      ++++||+|++....+.......++.++.++.|+|||||+++.
T Consensus       102 ~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          102 PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             CCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            889999999975444333333456899999999999999864

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.23  E-value=1.2e-11  Score=124.67  Aligned_cols=98  Identities=15%  Similarity=0.178  Sum_probs=76.9

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++..++++|. .++  ++|.+ +|++.|++    .|+   +.++.++.+.++++ ++||+|++..+.+
T Consensus        65 ~~VLDlGcGtG~ls~~la~~g~~~V~--gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~  140 (376)
T 3r0q_C           65 KTVLDVGTGSGILAIWSAQAGARKVY--AVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGY  140 (376)
T ss_dssp             CEEEEESCTTTHHHHHHHHTTCSEEE--EEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBT
T ss_pred             CEEEEeccCcCHHHHHHHhcCCCEEE--EEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhh
Confidence            5899999999999999999976 554  57999 88877655    344   35566888888877 8999999966555


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .......++.++.+++|+|||||+++++..
T Consensus       141 ~l~~e~~~~~~l~~~~~~LkpgG~li~~~~  170 (376)
T 3r0q_C          141 FLLRESMFDSVISARDRWLKPTGVMYPSHA  170 (376)
T ss_dssp             TBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred             cccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence            443334466899999999999999977553

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.23  E-value=3.3e-11  Score=108.70  Aligned_cols=137  Identities=12%  Similarity=0.192  Sum_probs=85.3

Q ss_pred             CeEEEECCccChHHHHHhhc----CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC--------------------
Q 037675          266 RIGFDIGGGSGTFAARMAER----NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP--------------------  321 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~----gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP--------------------  321 (418)
                      .+|||+|||+|.++..++++    +..++  ++|+++..    ...+ +.+..++...++                    
T Consensus        24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~--gvD~s~~~----~~~~-v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~   96 (201)
T 2plw_A           24 KIILDIGCYPGSWCQVILERTKNYKNKII--GIDKKIMD----PIPN-VYFIQGEIGKDNMNNIKNINYIDNMNNNSVDY   96 (201)
T ss_dssp             EEEEEESCTTCHHHHHHHHHTTTSCEEEE--EEESSCCC----CCTT-CEEEECCTTTTSSCCC-----------CHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHcCCCCceEE--EEeCCccC----CCCC-ceEEEccccchhhhhhccccccccccchhhHH
Confidence            48999999999999999986    24554  56877621    0112 245566666666                    


Q ss_pred             -----CCCCccceEEecCcCcCCCCh--hH------HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcE
Q 037675          322 -----FYDNVFDLVHASSGLDVGGQP--EK------LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYK  388 (418)
Q Consensus       322 -----f~d~sFDlV~s~~~L~~~~~~--~~------le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk  388 (418)
                           +++++||+|++..++++....  +.      .+.++.++.|+|||||.|++..+...  .. ..+...++. .|.
T Consensus        97 ~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~--~~-~~l~~~l~~-~f~  172 (201)
T 2plw_A           97 KLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS--QT-NNLKTYLKG-MFQ  172 (201)
T ss_dssp             HHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST--TH-HHHHHHHHT-TEE
T ss_pred             HHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC--CH-HHHHHHHHH-HHh
Confidence                 677899999998877653211  11      12478999999999999988655322  22 224444444 377


Q ss_pred             EEEEEEcccCCCCccceEEEEEEEc
Q 037675          389 KLKWVVGEKGETGKSEVYLSAVLQK  413 (418)
Q Consensus       389 ~l~W~~~~k~d~~~~e~~l~Ai~qK  413 (418)
                      .+.+...........|.|+.+.-.|
T Consensus       173 ~v~~~~~~~~r~~s~e~y~v~~~~~  197 (201)
T 2plw_A          173 LVHTTKPKASRNESREIYLVCKNFL  197 (201)
T ss_dssp             EEEECCCC-----CCEEEEEEEEEC
T ss_pred             eEEEECCcccCCcCceEEEEEecCc
Confidence            6654322111124568888766543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.22  E-value=3.4e-11  Score=109.55  Aligned_cols=99  Identities=18%  Similarity=0.049  Sum_probs=77.4

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccceE
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFDLV  330 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFDlV  330 (418)
                      .+.+.++  .+|||+|||+|.++..|++.+..++  ++|+++.+++.++++    |+  +.+..++....+..+++||+|
T Consensus        72 ~l~~~~~--~~vLdiG~G~G~~~~~la~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i  147 (210)
T 3lbf_A           72 LLELTPQ--SRVLEIGTGSGYQTAILAHLVQHVC--SVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAI  147 (210)
T ss_dssp             HTTCCTT--CEEEEECCTTSHHHHHHHHHSSEEE--EEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEE
T ss_pred             hcCCCCC--CEEEEEcCCCCHHHHHHHHhCCEEE--EEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEE
Confidence            3344444  5899999999999999999876664  479999999887764    43  244556666666678899999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      ++..++++..+         ++.++|||||++++....
T Consensus       148 ~~~~~~~~~~~---------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          148 IVTAAPPEIPT---------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             EESSBCSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred             EEccchhhhhH---------HHHHhcccCcEEEEEEcC
Confidence            99999987753         688999999999887654

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.21  E-value=5.8e-11  Score=107.54  Aligned_cols=110  Identities=19%  Similarity=0.159  Sum_probs=79.3

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++..+++.  +..++  ++|+++.+++.++++    ++  +.+..++...++ ++++||+|++...  
T Consensus        67 ~~vLDiG~G~G~~~~~l~~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~--  141 (207)
T 1jsx_A           67 ERFIDVGTGPGLPGIPLSIVRPEAHFT--LLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF--  141 (207)
T ss_dssp             SEEEEETCTTTTTHHHHHHHCTTSEEE--EEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEE--EEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc--
Confidence            48999999999999999876  45554  579999999877653    44  344556666665 5689999997542  


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                        .+   ...++.++.++|||||++++.......++    +..+.+  ||+.++
T Consensus       142 --~~---~~~~l~~~~~~L~~gG~l~~~~~~~~~~~----~~~~~~--g~~~~~  184 (207)
T 1jsx_A          142 --AS---LNDMVSWCHHLPGEQGRFYALKGQMPEDE----IALLPE--EYQVES  184 (207)
T ss_dssp             --SS---HHHHHHHHTTSEEEEEEEEEEESSCCHHH----HHTSCT--TEEEEE
T ss_pred             --CC---HHHHHHHHHHhcCCCcEEEEEeCCCchHH----HHHHhc--CCceee
Confidence              22   34899999999999999988754433333    333333  787765

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.21  E-value=1.3e-10  Score=109.91  Aligned_cols=108  Identities=19%  Similarity=0.179  Sum_probs=77.4

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCC-CC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHR-FP  321 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~-LP  321 (418)
                      ++..++.+.++  ++|||+|||+|..+..|++.   +..++  ++|+++.+++.|+++    |+   +.+..+++.. +|
T Consensus        54 ~l~~l~~~~~~--~~VLdiG~G~G~~~~~la~~~~~~~~v~--~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~  129 (248)
T 3tfw_A           54 FLALLVRLTQA--KRILEIGTLGGYSTIWMARELPADGQLL--TLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLE  129 (248)
T ss_dssp             HHHHHHHHHTC--SEEEEECCTTSHHHHHHHTTSCTTCEEE--EEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred             HHHHHHhhcCC--CEEEEecCCchHHHHHHHHhCCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence            34444444444  59999999999999999987   45554  579999999887664    54   2344555443 44


Q ss_pred             CC--CCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          322 FY--DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       322 f~--d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                      ..  .++||+|++...      ......++.++.|+|||||++++.+..+.
T Consensus       130 ~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~  174 (248)
T 3tfw_A          130 SLGECPAFDLIFIDAD------KPNNPHYLRWALRYSRPGTLIIGDNVVRD  174 (248)
T ss_dssp             TCCSCCCCSEEEECSC------GGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred             hcCCCCCeEEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence            43  349999998542      23345799999999999999999887554

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.21  E-value=2.6e-11  Score=120.38  Aligned_cols=121  Identities=12%  Similarity=0.107  Sum_probs=90.1

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChh
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPE  343 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~  343 (418)
                      .+|||||||+|.++..++++  ++.++  ++|. +.+++.+++..-+.+..++... |++  .||+|++..++|+|.+. 
T Consensus       195 ~~vlDvG~G~G~~~~~l~~~~p~~~~~--~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~-  267 (358)
T 1zg3_A          195 ESLVDVGGGTGGVTKLIHEIFPHLKCT--VFDQ-PQVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDE-  267 (358)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTSEEE--EEEC-HHHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHH-
T ss_pred             CEEEEECCCcCHHHHHHHHHCCCCeEE--Eecc-HHHHhhcccCCCcEEEeCccCC-CCC--CceEEEEcccccCCCHH-
Confidence            58999999999999999987  35553  4688 6777665542223455566655 665  39999999999999654 


Q ss_pred             HHHHHHHHhhccccC---CcEEEEEecccCc--------h-----------------hHHHHHHHHHHHcCcEEEEEE
Q 037675          344 KLEFLMFDFDRILRA---GGLFWLDNFYCAN--------D-----------------EKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       344 ~le~~L~Ei~RVLRP---GG~~ii~~~~~~~--------e-----------------e~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      ....+|.++.|+|||   ||+++|.++....        .                 ...++|..++++.||+.++..
T Consensus       268 ~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~  345 (358)
T 1zg3_A          268 QSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKIT  345 (358)
T ss_dssp             HHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEE
Confidence            345899999999999   9999887753211        0                 023578999999999988743

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.21  E-value=4.3e-11  Score=116.46  Aligned_cols=99  Identities=13%  Similarity=0.107  Sum_probs=74.7

Q ss_pred             CeEEEECCccCh----HHHHHhhc-C-----cEEEEeccCCCHHhHHHHHHcC---------------------------
Q 037675          266 RIGFDIGGGSGT----FAARMAER-N-----VTVITNTLNVDAPYSEFIAARG---------------------------  308 (418)
Q Consensus       266 r~VLDvGCGtG~----faa~La~~-g-----V~vv~~alD~s~~~l~~a~eRG---------------------------  308 (418)
                      .+|+|+|||||.    +|..|++. +     ..+  +++|+|+.|++.|++.-                           
T Consensus       107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I--~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          107 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKV--FASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEE--EEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             cEEEEeeccCChhHHHHHHHHHHhcccCCCCeEE--EEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            489999999997    66667764 2     444  46899999999988741                           


Q ss_pred             ----------CCceeecccCCCCCC-CCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          309 ----------LFPLYLSLDHRFPFY-DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       309 ----------li~~~~~~~e~LPf~-d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                                .+.+...+....|++ ++.||+|+|.+++++..+ ...+.++.++.++|||||++++.+.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~-~~~~~vl~~~~~~L~pgG~L~lg~s  253 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDK-TTQEDILRRFVPLLKPDGLLFAGHS  253 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCH-HHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCH-HHHHHHHHHHHHHhCCCcEEEEEec
Confidence                      112223445555665 678999999999998854 4467999999999999999988543

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.20  E-value=8e-11  Score=115.38  Aligned_cols=125  Identities=21%  Similarity=0.246  Sum_probs=86.1

Q ss_pred             CCeEEEECCccChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcC----------CCceeecccCCCCC--CCCccceE
Q 037675          265 IRIGFDIGGGSGTFAARMAER-NV-TVITNTLNVDAPYSEFIAARG----------LFPLYLSLDHRFPF--YDNVFDLV  330 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRG----------li~~~~~~~e~LPf--~d~sFDlV  330 (418)
                      ..+|||+|||+|.++..+++. ++ .+  .++|+++.+++.++++-          -+.++.++...++.  ++++||+|
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v--~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           96 PERVLIIGGGDGGVLREVLRHGTVEHC--DLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHHTCTTCCEE--EEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHhCCCCCEE--EEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            369999999999999999987 33 44  35799999999887642          12445566555543  47899999


Q ss_pred             EecCcCcCCCChhHH--HHHHHHhhccccCCcEEEEEeccc-CchhHHHHHHHHHHHcCcEEEEE
Q 037675          331 HASSGLDVGGQPEKL--EFLMFDFDRILRAGGLFWLDNFYC-ANDEKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       331 ~s~~~L~~~~~~~~l--e~~L~Ei~RVLRPGG~~ii~~~~~-~~ee~~~~~~~l~~~~Gfk~l~W  392 (418)
                      ++....+.+. ...+  ..++.++.|+|||||++++..... ......+.+.+.+++.||..+.-
T Consensus       174 i~d~~~~~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~  237 (304)
T 3bwc_A          174 IIDTTDPAGP-ASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQY  237 (304)
T ss_dssp             EEECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             EECCCCcccc-chhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEE
Confidence            9976554432 2222  478999999999999998865421 22233455778889999987753

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.20  E-value=1.1e-10  Score=112.63  Aligned_cols=116  Identities=18%  Similarity=0.240  Sum_probs=87.0

Q ss_pred             CeEEEECCccChHHHHHhhcCcE-EEEeccCCCHHhHHHHHHc----CCC---ceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVT-VITNTLNVDAPYSEFIAAR----GLF---PLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~-vv~~alD~s~~~l~~a~eR----Gli---~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++..+++.+.. ++  ++|+++.+++.|+++    |+.   .++.+++..++. +++||+|++.... 
T Consensus       127 ~~VLDlgcG~G~~~~~la~~~~~~V~--~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p~-  202 (278)
T 2frn_A          127 ELVVDMFAGIGHLSLPIAVYGKAKVI--AIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVV-  202 (278)
T ss_dssp             CEEEETTCTTTTTHHHHHHHTCCEEE--EECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCS-
T ss_pred             CEEEEecccCCHHHHHHHHhCCCEEE--EEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCch-
Confidence            48999999999999999988653 43  589999999877653    552   345678887776 8899999985332 


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccC---chhHHHHHHHHHHHcCcEEEE
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA---NDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~---~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                         ..   ..++.++.|+|||||++++.+....   .++..+.+...++..||+...
T Consensus       203 ---~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          203 ---RT---HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             ---SG---GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             ---hH---HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence               11   2788899999999999988776432   133345578889999997543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.20  E-value=1.9e-11  Score=125.67  Aligned_cols=104  Identities=11%  Similarity=0.123  Sum_probs=79.5

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc-CcE-EEEeccCCCHHhHHHHHH-----------cCC----CceeecccCCCC
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER-NVT-VITNTLNVDAPYSEFIAA-----------RGL----FPLYLSLDHRFP  321 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~-gV~-vv~~alD~s~~~l~~a~e-----------RGl----i~~~~~~~e~LP  321 (418)
                      .+.+|  .+|||+|||+|.++..++.. +.. ++  ++|+++.+++.|.+           .|+    +.++.+++..+|
T Consensus       170 ~l~~g--d~VLDLGCGtG~l~l~lA~~~g~~kVv--GIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp  245 (438)
T 3uwp_A          170 KMTDD--DLFVDLGSGVGQVVLQVAAATNCKHHY--GVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEE  245 (438)
T ss_dssp             CCCTT--CEEEEESCTTSHHHHHHHHHCCCSEEE--EEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHH
T ss_pred             CCCCC--CEEEEeCCCCCHHHHHHHHHCCCCEEE--EEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCc
Confidence            45555  48999999999999988864 654 54  58999988877654           132    456678888888


Q ss_pred             CCC--CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          322 FYD--NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       322 f~d--~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                      |.+  ..||+|+++..+. +   .++...|.|+.|+|||||.|++.+++..
T Consensus       246 ~~d~~~~aDVVf~Nn~~F-~---pdl~~aL~Ei~RvLKPGGrIVssE~f~p  292 (438)
T 3uwp_A          246 WRERIANTSVIFVNNFAF-G---PEVDHQLKERFANMKEGGRIVSSKPFAP  292 (438)
T ss_dssp             HHHHHHTCSEEEECCTTC-C---HHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred             cccccCCccEEEEccccc-C---chHHHHHHHHHHcCCCCcEEEEeecccC
Confidence            865  5799999976653 3   3456889999999999999999877553

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.19  E-value=7.8e-11  Score=110.45  Aligned_cols=118  Identities=18%  Similarity=0.251  Sum_probs=85.5

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCcc
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVF  327 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sF  327 (418)
                      +.+.++  .+|||+|||+|.++..+++.   +..++  ++|+++.+++.|+++    |+   +.+..++... ++++++|
T Consensus        89 ~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~~v~--~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~  163 (255)
T 3mb5_A           89 AGISPG--DFIVEAGVGSGALTLFLANIVGPEGRVV--SYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE-GIEEENV  163 (255)
T ss_dssp             TTCCTT--CEEEEECCTTSHHHHHHHHHHCTTSEEE--EECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG-CCCCCSE
T ss_pred             hCCCCC--CEEEEecCCchHHHHHHHHHhCCCeEEE--EEecCHHHHHHHHHHHHHcCCCCceEEEECchhh-ccCCCCc
Confidence            344444  58999999999999999987   45554  579999999887765    54   2344555554 3778899


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcC--cEEEE
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFG--YKKLK  391 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~G--fk~l~  391 (418)
                      |+|++.     ..++.   .++.++.|+|||||++++..+..   +..+.+...+++.|  |..+.
T Consensus       164 D~v~~~-----~~~~~---~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~l~~~g~~f~~~~  218 (255)
T 3mb5_A          164 DHVILD-----LPQPE---RVVEHAAKALKPGGFFVAYTPCS---NQVMRLHEKLREFKDYFMKPR  218 (255)
T ss_dssp             EEEEEC-----SSCGG---GGHHHHHHHEEEEEEEEEEESSH---HHHHHHHHHHHHTGGGBSCCE
T ss_pred             CEEEEC-----CCCHH---HHHHHHHHHcCCCCEEEEEECCH---HHHHHHHHHHHHcCCCccccE
Confidence            999983     22332   68999999999999998876543   22234667788888  87654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.19  E-value=4.5e-11  Score=113.00  Aligned_cols=120  Identities=18%  Similarity=0.255  Sum_probs=78.9

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----------CC--CceeecccCC-CC--CCCCccc
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----------GL--FPLYLSLDHR-FP--FYDNVFD  328 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----------Gl--i~~~~~~~e~-LP--f~d~sFD  328 (418)
                      .+|||||||+|.++..|++.  +..++  ++|+++.|++.|+++          ++  +.++.+++.. +|  +++++||
T Consensus        48 ~~vLDiGcG~G~~~~~la~~~p~~~v~--GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D  125 (235)
T 3ckk_A           48 VEFADIGCGYGGLLVELSPLFPDTLIL--GLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT  125 (235)
T ss_dssp             EEEEEETCTTCHHHHHHGGGSTTSEEE--EEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred             CeEEEEccCCcHHHHHHHHHCCCCeEE--EEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence            48999999999999999987  35554  589999999877542          33  2445567765 77  8899999


Q ss_pred             eEEecCcCcCCCChh-----HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcC-cEEE
Q 037675          329 LVHASSGLDVGGQPE-----KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFG-YKKL  390 (418)
Q Consensus       329 lV~s~~~L~~~~~~~-----~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~G-fk~l  390 (418)
                      .|++...-.+.....     ....++.++.|+|||||.|++....   +...+...+.+...+ |..+
T Consensus       126 ~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~---~~~~~~~~~~l~~~~~f~~~  190 (235)
T 3ckk_A          126 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV---LELHDWMCTHFEEHPLFERV  190 (235)
T ss_dssp             EEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC---HHHHHHHHHHHHTSTTEEEE
T ss_pred             EEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC---HHHHHHHHHHHHHCCCcccc
Confidence            998754322211000     0136899999999999999876432   222223344445554 5443

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.19  E-value=1e-10  Score=108.08  Aligned_cols=152  Identities=17%  Similarity=0.203  Sum_probs=94.4

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCC-CC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHR-FP  321 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~-LP  321 (418)
                      ++..++...++  .+|||+|||+|.++..|++.   +..++  ++|+++.+++.|+++    |+   +.++.+++.. ++
T Consensus        49 ~l~~l~~~~~~--~~vLdiG~G~G~~~~~la~~~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~  124 (221)
T 3u81_A           49 IMDAVIREYSP--SLVLELGAYCGYSAVRMARLLQPGARLL--TMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIP  124 (221)
T ss_dssp             HHHHHHHHHCC--SEEEEECCTTSHHHHHHHTTSCTTCEEE--EEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG
T ss_pred             HHHHHHHhcCC--CEEEEECCCCCHHHHHHHHhCCCCCEEE--EEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHH
Confidence            45555544443  58999999999999999984   45554  579999999887663    44   3445555422 34


Q ss_pred             CCC-----CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcc
Q 037675          322 FYD-----NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGE  396 (418)
Q Consensus       322 f~d-----~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~  396 (418)
                      ..+     ++||+|++....+++.   ....++.++ |+|||||++++++....+..  +.+..+.+.-+|+.......-
T Consensus       125 ~~~~~~~~~~fD~V~~d~~~~~~~---~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~  198 (221)
T 3u81_A          125 QLKKKYDVDTLDMVFLDHWKDRYL---PDTLLLEKC-GLLRKGTVLLADNVIVPGTP--DFLAYVRGSSSFECTHYSSYL  198 (221)
T ss_dssp             GTTTTSCCCCCSEEEECSCGGGHH---HHHHHHHHT-TCCCTTCEEEESCCCCCCCH--HHHHHHHHCTTEEEEEEEEEE
T ss_pred             HHHHhcCCCceEEEEEcCCcccch---HHHHHHHhc-cccCCCeEEEEeCCCCcchH--HHHHHHhhCCCceEEEccccc
Confidence            333     7999999987666552   223567777 99999999999887654422  222233333345443221100


Q ss_pred             cCCCCccceEEEEEEEcCC
Q 037675          397 KGETGKSEVYLSAVLQKPV  415 (418)
Q Consensus       397 k~d~~~~e~~l~Ai~qKP~  415 (418)
                      .. ....+.+..++++.|-
T Consensus       199 ~~-~~~~dG~~~~~~~g~~  216 (221)
T 3u81_A          199 EY-MKVVDGLEKAIYQGPS  216 (221)
T ss_dssp             TT-TTEEEEEEEEEECCCC
T ss_pred             cc-CCCCCceEEEEEeCCC
Confidence            00 1134567777877664

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.19  E-value=1.3e-11  Score=115.23  Aligned_cols=99  Identities=18%  Similarity=0.163  Sum_probs=72.1

Q ss_pred             CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCC-C--CCCCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRF-P--FYDNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~L-P--f~d~sFDlV~s~~  334 (418)
                      .+|||||||+|.++..|++.+  ..++  ++|+++.+++.|++    .|+  +.++.+++..+ +  +++++||.|++..
T Consensus        36 ~~vLDiGcG~G~~~~~lA~~~p~~~v~--giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           36 PVTLEIGFGMGASLVAMAKDRPEQDFL--GIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CEEEEESCTTCHHHHHHHHHCTTSEEE--EECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CeEEEEeeeChHHHHHHHHHCCCCeEE--EEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            589999999999999999873  4554  58999999987654    354  23445666553 4  7899999999875


Q ss_pred             cCcCCCChhHH------HHHHHHhhccccCCcEEEEEec
Q 037675          335 GLDVGGQPEKL------EFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       335 ~L~~~~~~~~l------e~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ...+. .....      ..++.++.|+|||||+|++...
T Consensus       114 ~~p~~-~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td  151 (218)
T 3dxy_A          114 PDPWH-KARHNKRRIVQVPFAELVKSKLQLGGVFHMATD  151 (218)
T ss_dssp             CCCCC-SGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CCCcc-chhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence            44322 22111      1489999999999999987653

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.18  E-value=1.5e-10  Score=106.33  Aligned_cols=108  Identities=15%  Similarity=0.152  Sum_probs=76.2

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCC-CC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHR-FP  321 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~-LP  321 (418)
                      .+..++.+.++  .+|||+|||+|.++..|++.   +..++  ++|+++.+++.++++    |+   +.+..+++.. ++
T Consensus        49 ~l~~l~~~~~~--~~vLdiG~G~G~~~~~la~~~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  124 (223)
T 3duw_A           49 FLQLLVQIQGA--RNILEIGTLGGYSTIWLARGLSSGGRVV--TLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQ  124 (223)
T ss_dssp             HHHHHHHHHTC--SEEEEECCTTSHHHHHHHTTCCSSCEEE--EEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred             HHHHHHHhhCC--CEEEEecCCccHHHHHHHHhCCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence            44444444444  48999999999999999987   55554  579999999877653    54   3344554432 22


Q ss_pred             -CC---CCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          322 -FY---DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       322 -f~---d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                       ++   .++||+|++....      .....++.++.|+|||||++++.+..+.
T Consensus       125 ~~~~~~~~~fD~v~~d~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~~~  171 (223)
T 3duw_A          125 QIENEKYEPFDFIFIDADK------QNNPAYFEWALKLSRPGTVIIGDNVVRE  171 (223)
T ss_dssp             HHHHTTCCCCSEEEECSCG------GGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred             HHHhcCCCCcCEEEEcCCc------HHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence             11   2679999986542      2344899999999999999999887554

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.18  E-value=6e-11  Score=109.43  Aligned_cols=97  Identities=20%  Similarity=0.148  Sum_probs=74.5

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCCccceEEec
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDNVFDLVHAS  333 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~sFDlV~s~  333 (418)
                      +.+.++  .+|||+|||+|.++..|++.+..++  ++|+++.+++.++++.    -+.+..++.......+++||+|++.
T Consensus        66 ~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  141 (231)
T 1vbf_A           66 LDLHKG--QKVLEIGTGIGYYTALIAEIVDKVV--SVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVW  141 (231)
T ss_dssp             TTCCTT--CEEEEECCTTSHHHHHHHHHSSEEE--EEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEES
T ss_pred             cCCCCC--CEEEEEcCCCCHHHHHHHHHcCEEE--EEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEEC
Confidence            344444  4899999999999999999875554  5799999999888762    2245555555532357899999999


Q ss_pred             CcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .++++..         .++.++|||||++++...
T Consensus       142 ~~~~~~~---------~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          142 ATAPTLL---------CKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             SBBSSCC---------HHHHHTEEEEEEEEEEEC
T ss_pred             CcHHHHH---------HHHHHHcCCCcEEEEEEc
Confidence            9998763         278999999999988765

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.18  E-value=1.7e-12  Score=120.77  Aligned_cols=95  Identities=15%  Similarity=0.097  Sum_probs=75.8

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      .+|||+|||+|.++..|++.+..++  ++|+++.+++.++++    |+   +.++.++...++ ++++||+|++...+++
T Consensus        80 ~~vLD~gcG~G~~~~~la~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~  156 (241)
T 3gdh_A           80 DVVVDAFCGVGGNTIQFALTGMRVI--AIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGG  156 (241)
T ss_dssp             SEEEETTCTTSHHHHHHHHTTCEEE--EEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSS
T ss_pred             CEEEECccccCHHHHHHHHcCCEEE--EEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCC
Confidence            4899999999999999999986664  589999999877653    43   345566776666 6789999999988887


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      .....   ..+.++.|+|||||++++..
T Consensus       157 ~~~~~---~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          157 PDYAT---AETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             GGGGG---SSSBCTTTSCSSCHHHHHHH
T ss_pred             cchhh---hHHHHHHhhcCCcceeHHHH
Confidence            65443   46779999999999976654

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.18  E-value=1.1e-10  Score=110.85  Aligned_cols=119  Identities=18%  Similarity=0.164  Sum_probs=84.3

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc-----C----CCceeecccCCCCCCCCc
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR-----G----LFPLYLSLDHRFPFYDNV  326 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR-----G----li~~~~~~~e~LPf~d~s  326 (418)
                      .+.++  .+|||+|||+|.++..|++.   +..++  ++|.++.+++.++++     |    .+.+..++...+++++++
T Consensus        96 ~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~--~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~  171 (280)
T 1i9g_A           96 DIFPG--ARVLEAGAGSGALTLSLLRAVGPAGQVI--SYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGS  171 (280)
T ss_dssp             TCCTT--CEEEEECCTTSHHHHHHHHHHCTTSEEE--EECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTC
T ss_pred             CCCCC--CEEEEEcccccHHHHHHHHHhCCCCEEE--EEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCc
Confidence            44444  48999999999999999985   45553  579999999887664     4    234455677778888899


Q ss_pred             cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      ||+|++..     .++.   .++.++.|+|||||++++..+..  +...+.+..+.+..+|..+.
T Consensus       172 ~D~v~~~~-----~~~~---~~l~~~~~~L~pgG~l~~~~~~~--~~~~~~~~~l~~~~~f~~~~  226 (280)
T 1i9g_A          172 VDRAVLDM-----LAPW---EVLDAVSRLLVAGGVLMVYVATV--TQLSRIVEALRAKQCWTEPR  226 (280)
T ss_dssp             EEEEEEES-----SCGG---GGHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHHSSBCCCE
T ss_pred             eeEEEECC-----cCHH---HHHHHHHHhCCCCCEEEEEeCCH--HHHHHHHHHHHhcCCcCCcE
Confidence            99999832     2222   68899999999999998876633  23333333333437786543

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.18  E-value=2.5e-11  Score=111.19  Aligned_cols=97  Identities=15%  Similarity=0.148  Sum_probs=72.2

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHc----CC----CceeecccCCC-CC-CCCc-cceEEec
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAAR----GL----FPLYLSLDHRF-PF-YDNV-FDLVHAS  333 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eR----Gl----i~~~~~~~e~L-Pf-~d~s-FDlV~s~  333 (418)
                      .+|||+|||+|.++..++.++. .++  ++|+++.|++.|+++    |+    +.++.+++..+ +. ++++ ||+|++.
T Consensus        55 ~~vLDlGcGtG~~~~~~~~~~~~~v~--gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           55 SECLDGFAGSGSLGFEALSRQAKKVT--FLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCSEEE--EECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CeEEEcCCccCHHHHHHHHccCCEEE--EEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            4899999999999998887764 443  589999999887663    43    24445555543 22 4678 9999998


Q ss_pred             CcCcCCCChhHHHHHHHHh--hccccCCcEEEEEecc
Q 037675          334 SGLDVGGQPEKLEFLMFDF--DRILRAGGLFWLDNFY  368 (418)
Q Consensus       334 ~~L~~~~~~~~le~~L~Ei--~RVLRPGG~~ii~~~~  368 (418)
                      ..++ .   ...+.++.++  .|+|||||++++....
T Consensus       133 ~~~~-~---~~~~~~l~~~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          133 PPFH-F---NLAEQAISLLCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             CCSS-S---CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             CCCC-C---ccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            7754 2   2345788888  8899999999887654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.16  E-value=3.3e-10  Score=103.70  Aligned_cols=139  Identities=16%  Similarity=0.167  Sum_probs=88.1

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCC-------C----CccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFY-------D----NVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~-------d----~sFDlV~s~~  334 (418)
                      .+|||+|||+|.++..+++++..+++  +|+++...    ..++ .++.++....+..       .    ++||+|++..
T Consensus        27 ~~VLDlG~G~G~~s~~la~~~~~V~g--vD~~~~~~----~~~v-~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~   99 (191)
T 3dou_A           27 DAVIEIGSSPGGWTQVLNSLARKIIS--IDLQEMEE----IAGV-RFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDA   99 (191)
T ss_dssp             CEEEEESCTTCHHHHHHTTTCSEEEE--EESSCCCC----CTTC-EEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECC
T ss_pred             CEEEEEeecCCHHHHHHHHcCCcEEE--Eecccccc----CCCe-EEEEccccCHHHHHHHHHHhhcccCCcceEEecCC
Confidence            58999999999999999998766654  67765310    1132 5566776665421       1    4899999975


Q ss_pred             cCcCCCC--------hhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceE
Q 037675          335 GLDVGGQ--------PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVY  406 (418)
Q Consensus       335 ~L~~~~~--------~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~  406 (418)
                      .......        ....+.++.++.|+|||||.|++..+....  . ..+...++. .|+.++.....-..++..|.|
T Consensus       100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~--~-~~~~~~l~~-~F~~v~~~kP~asR~~s~E~y  175 (191)
T 3dou_A          100 MAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM--T-NDFIAIWRK-NFSSYKISKPPASRGSSSEIY  175 (191)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH--H-HHHHHHHGG-GEEEEEEECC------CCEEE
T ss_pred             CcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC--H-HHHHHHHHH-hcCEEEEECCCCccCCCceEE
Confidence            4332211        112357889999999999999887664332  2 234444544 388887544222224567999


Q ss_pred             EEEEEEcCC
Q 037675          407 LSAVLQKPV  415 (418)
Q Consensus       407 l~Ai~qKP~  415 (418)
                      +.+.-.|..
T Consensus       176 ~v~~~~~~~  184 (191)
T 3dou_A          176 IMFFGFKAE  184 (191)
T ss_dssp             EEEEEECCC
T ss_pred             EEEeeeccc
Confidence            998877753

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.16  E-value=1.5e-10  Score=117.50  Aligned_cols=100  Identities=21%  Similarity=0.254  Sum_probs=81.3

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      .+|||+|||+|.++..+++++..++  ++|+++.+++.++++    ++ +.++.++...++.++++||+|+++-.+|+..
T Consensus       235 ~~VLDlGcG~G~~~~~la~~g~~V~--gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~  312 (381)
T 3dmg_A          235 RQVLDLGAGYGALTLPLARMGAEVV--GVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGG  312 (381)
T ss_dssp             CEEEEETCTTSTTHHHHHHTTCEEE--EEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTC
T ss_pred             CEEEEEeeeCCHHHHHHHHcCCEEE--EEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhcc
Confidence            5899999999999999999987664  589999999877653    33 3556678888877779999999998887622


Q ss_pred             --ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          341 --QPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       341 --~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                        .....+.++.++.|+|||||++++...
T Consensus       313 ~~~~~~~~~~l~~~~~~LkpGG~l~iv~n  341 (381)
T 3dmg_A          313 AVILDVAQAFVNVAAARLRPGGVFFLVSN  341 (381)
T ss_dssp             SSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence              134567899999999999999988754

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.16  E-value=4.8e-11  Score=105.66  Aligned_cols=98  Identities=16%  Similarity=0.168  Sum_probs=72.0

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHc----CC---CceeecccCC-CCCCCCccceEEecCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHR-FPFYDNVFDLVHASSGL  336 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~-LPf~d~sFDlV~s~~~L  336 (418)
                      .+|||+|||+|.++..+++++. .++  ++|+++.+++.++++    |+   +.++.++... ++..++.||+|++...+
T Consensus        33 ~~vLDlGcG~G~~~~~l~~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~  110 (177)
T 2esr_A           33 GRVLDLFAGSGGLAIEAVSRGMSAAV--LVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY  110 (177)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCCEEE--EECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred             CeEEEeCCCCCHHHHHHHHcCCCEEE--EEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC
Confidence            4899999999999999998864 443  589999999887663    33   2344455544 45556789999997665


Q ss_pred             cCCCChhHHHHHHHHhh--ccccCCcEEEEEeccc
Q 037675          337 DVGGQPEKLEFLMFDFD--RILRAGGLFWLDNFYC  369 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~--RVLRPGG~~ii~~~~~  369 (418)
                      +.    ...+.++..+.  |+|||||++++.....
T Consensus       111 ~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A          111 AK----ETIVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             HH----HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             Cc----chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence            32    23446677776  9999999998877643

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.15  E-value=7.6e-11  Score=117.40  Aligned_cols=105  Identities=11%  Similarity=0.099  Sum_probs=77.3

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCC
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDN  325 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~  325 (418)
                      |.+.+.+.++  .+|||||||+|.++..+++.+. .++  ++|.++ |++.++++    |+   +.++.++.+.++++ +
T Consensus        42 i~~~l~~~~~--~~VLDiGcGtG~ls~~la~~g~~~V~--~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~  115 (348)
T 2y1w_A           42 ILQNHTDFKD--KIVLDVGCGSGILSFFAAQAGARKIY--AVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-E  115 (348)
T ss_dssp             HHHTGGGTTT--CEEEEETCTTSHHHHHHHHTTCSEEE--EEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-S
T ss_pred             HHhccccCCc--CEEEEcCCCccHHHHHHHhCCCCEEE--EECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-C
Confidence            3333344444  4899999999999999998864 554  478885 77665543    44   35566788888765 6


Q ss_pred             ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      +||+|++..+++++... .+...+.++.|+|||||.+++.
T Consensus       116 ~~D~Ivs~~~~~~~~~~-~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          116 QVDIIISEPMGYMLFNE-RMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CEEEEEECCCBTTBTTT-SHHHHHHHGGGGEEEEEEEESC
T ss_pred             ceeEEEEeCchhcCChH-HHHHHHHHHHhhcCCCeEEEEe
Confidence            79999999887776543 3446788999999999999755

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.15  E-value=2.8e-11  Score=123.97  Aligned_cols=142  Identities=13%  Similarity=0.109  Sum_probs=94.5

Q ss_pred             cccccccccccCCcHHHHHHHHc-cCCCCCCeEEEECCc------cChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH
Q 037675          237 PNENQRYIKARGKNDFLIDDVLA-LGSGGIRIGFDIGGG------SGTFAARMAER---NVTVITNTLNVDAPYSEFIAA  306 (418)
Q Consensus       237 ~~e~~~W~~~~~~y~~~I~~lL~-l~~g~~r~VLDvGCG------tG~faa~La~~---gV~vv~~alD~s~~~l~~a~e  306 (418)
                      .++.++|... ..|....++++. +.. ...+|||||||      +|+.+..++++   +..++  ++|+++.|..   .
T Consensus       190 ~Y~tDK~~~~-h~y~~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~--GVDiSp~m~~---~  262 (419)
T 3sso_A          190 RYFTPKFGFL-HWFTPHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIY--GLDIMDKSHV---D  262 (419)
T ss_dssp             HTTCTTBSSS-CBCHHHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEE--EEESSCCGGG---C
T ss_pred             HhCCCccccc-chHHHHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEE--EEECCHHHhh---c
Confidence            4455666421 234444444443 322 23699999999      77777777654   45554  4788888731   2


Q ss_pred             cCCCceeecccCCCCCC------CCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc---c---Cc---
Q 037675          307 RGLFPLYLSLDHRFPFY------DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY---C---AN---  371 (418)
Q Consensus       307 RGli~~~~~~~e~LPf~------d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~---~---~~---  371 (418)
                      ..-+.++.+++..+||.      +++||+|++..+ |++   .+...+|.|+.|+|||||+|++.+..   +   .+   
T Consensus       263 ~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~---~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~  338 (419)
T 3sso_A          263 ELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HIN---AHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQAD  338 (419)
T ss_dssp             BTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCH---HHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSS
T ss_pred             CCCcEEEEecccccchhhhhhcccCCccEEEECCc-ccc---hhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCcc
Confidence            22246677899999988      799999999754 444   34568999999999999999998863   1   11   


Q ss_pred             -----hhHHHHHHHHHHHcCcEE
Q 037675          372 -----DEKKSALTRLIERFGYKK  389 (418)
Q Consensus       372 -----ee~~~~~~~l~~~~Gfk~  389 (418)
                           ....+.++.+++.+.+..
T Consensus       339 ~~~~~~tii~~lk~l~D~l~~~~  361 (419)
T 3sso_A          339 PQECSGTSLGLLKSLIDAIQHQE  361 (419)
T ss_dssp             TTCCTTSHHHHHHHHHHHHTGGG
T ss_pred             CCcchhHHHHHHHHHHHHhcccc
Confidence                 223456777777776653

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.14  E-value=3.8e-10  Score=107.68  Aligned_cols=119  Identities=15%  Similarity=0.068  Sum_probs=80.7

Q ss_pred             CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHcC-------C---CceeecccCCC-------CCCCCc
Q 037675          266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAARG-------L---FPLYLSLDHRF-------PFYDNV  326 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eRG-------l---i~~~~~~~e~L-------Pf~d~s  326 (418)
                      .+|||+|||+|.++..|+++.  ..+  +++|+++.+++.|+++-       +   +.++.++...+       ++++++
T Consensus        38 ~~VLDlG~G~G~~~l~la~~~~~~~v--~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  115 (260)
T 2ozv_A           38 CRIADLGAGAGAAGMAVAARLEKAEV--TLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH  115 (260)
T ss_dssp             EEEEECCSSSSHHHHHHHHHCTTEEE--EEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred             CEEEEeCChHhHHHHHHHHhCCCCeE--EEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence            489999999999999999884  444  35899999999887742       2   23455666666       367889


Q ss_pred             cceEEecCcCcCC---------------CChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          327 FDLVHASSGLDVG---------------GQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       327 FDlV~s~~~L~~~---------------~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      ||+|+++--+...               .....++.++.++.++|||||+|++.....   ... .+...++.. |...+
T Consensus       116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~-~~~~~l~~~-~~~~~  190 (260)
T 2ozv_A          116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ---SVA-EIIAACGSR-FGGLE  190 (260)
T ss_dssp             EEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG---GHH-HHHHHHTTT-EEEEE
T ss_pred             cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH---HHH-HHHHHHHhc-CCceE
Confidence            9999997322211               111235689999999999999998865432   222 244444443 65444

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.14  E-value=5.9e-10  Score=114.95  Aligned_cols=156  Identities=16%  Similarity=0.214  Sum_probs=104.2

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc--C-cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCC--
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER--N-VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFP--  321 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~--g-V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LP--  321 (418)
                      .+..++...+|  .+|||+|||+|+.+..|++.  + ..++  ++|+++.+++.+.++    |+  +.+..++...++  
T Consensus       250 l~~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~--a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~  325 (450)
T 2yxl_A          250 VASIVLDPKPG--ETVVDLAAAPGGKTTHLAELMKNKGKIY--AFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI  325 (450)
T ss_dssp             HHHHHHCCCTT--CEEEESSCTTCHHHHHHHHHTTTCSEEE--EECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS
T ss_pred             HHHHhcCCCCc--CEEEEeCCCccHHHHHHHHHcCCCCEEE--EEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh
Confidence            34455566666  48999999999999999885  3 4443  579999998877654    55  234446666666  


Q ss_pred             CCCCccceEEec------CcCcCCCCh------hHH-------HHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHH
Q 037675          322 FYDNVFDLVHAS------SGLDVGGQP------EKL-------EFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLI  382 (418)
Q Consensus       322 f~d~sFDlV~s~------~~L~~~~~~------~~l-------e~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~  382 (418)
                      +++++||+|++.      ++++...+.      .++       ..+|.++.++|||||++++++.....++.++.+..++
T Consensus       326 ~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l  405 (450)
T 2yxl_A          326 IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFL  405 (450)
T ss_dssp             SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred             hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHH
Confidence            556899999962      333322111      111       4789999999999999998877555555555677777


Q ss_pred             HHc-CcEEEEEE-------------EcccCCCCccceEEEEEEEcC
Q 037675          383 ERF-GYKKLKWV-------------VGEKGETGKSEVYLSAVLQKP  414 (418)
Q Consensus       383 ~~~-Gfk~l~W~-------------~~~k~d~~~~e~~l~Ai~qKP  414 (418)
                      ++. +|+.+.-.             +-+..  ...+.++.|+++|.
T Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~--~~~dGff~a~l~k~  449 (450)
T 2yxl_A          406 NVHPEFKLVPLKSPYDPGFLEGTMRAWPHR--HSTIGFFYALLEKS  449 (450)
T ss_dssp             HHCSSCEECCCCSSSEECSSTTCEEECHHH--HSSCCEEEEEEECC
T ss_pred             HhCCCCEEeecccccccccCCCeEEECCCC--CCCCceEEEEEEEC
Confidence            775 67654311             11110  13478899999984

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.14  E-value=3.1e-10  Score=101.68  Aligned_cols=138  Identities=16%  Similarity=0.193  Sum_probs=81.4

Q ss_pred             CeEEEECCccChHHHHHhhc-C----------cEEEEeccCCCHHhHHHHHHcCCCcee-ecccCCCC--------CCCC
Q 037675          266 RIGFDIGGGSGTFAARMAER-N----------VTVITNTLNVDAPYSEFIAARGLFPLY-LSLDHRFP--------FYDN  325 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-g----------V~vv~~alD~s~~~l~~a~eRGli~~~-~~~~e~LP--------f~d~  325 (418)
                      .+|||+|||+|.++..|+++ +          ..++  ++|+++.+.    ..+ +..+ .++....+        ++++
T Consensus        24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~--~vD~s~~~~----~~~-~~~~~~~d~~~~~~~~~~~~~~~~~   96 (196)
T 2nyu_A           24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVL--GVDLLHIFP----LEG-ATFLCPADVTDPRTSQRILEVLPGR   96 (196)
T ss_dssp             CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEE--EECSSCCCC----CTT-CEEECSCCTTSHHHHHHHHHHSGGG
T ss_pred             CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEE--EEechhccc----CCC-CeEEEeccCCCHHHHHHHHHhcCCC
Confidence            58999999999999999987 4          4454  478876320    011 2344 44443332        4467


Q ss_pred             ccceEEecCcCcCCCCh-hH-------HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEccc
Q 037675          326 VFDLVHASSGLDVGGQP-EK-------LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEK  397 (418)
Q Consensus       326 sFDlV~s~~~L~~~~~~-~~-------le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k  397 (418)
                      +||+|++..+++..... .+       .+.++.++.|+|||||.|++..+...  ... .+...+... |..+.+.....
T Consensus        97 ~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~--~~~-~~~~~l~~~-f~~v~~~~~~~  172 (196)
T 2nyu_A           97 RADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS--QSR-RLQRRLTEE-FQNVRIIKPEA  172 (196)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG--GGH-HHHHHHHHH-EEEEEEECCC-
T ss_pred             CCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc--cHH-HHHHHHHHH-hcceEEECCcc
Confidence            89999997655532211 11       14789999999999999988866432  222 233444443 76666533221


Q ss_pred             CCCCccceEEEEEEEcC
Q 037675          398 GETGKSEVYLSAVLQKP  414 (418)
Q Consensus       398 ~d~~~~e~~l~Ai~qKP  414 (418)
                      ......|.|+.+...|-
T Consensus       173 ~~~~~~e~~~v~~g~~~  189 (196)
T 2nyu_A          173 SRKESSEVYFLATQYHG  189 (196)
T ss_dssp             -------EEEEEEEECC
T ss_pred             cCccCceEEEEeeecCC
Confidence            11245578887776653

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.13  E-value=6.5e-11  Score=110.62  Aligned_cols=107  Identities=15%  Similarity=0.268  Sum_probs=77.5

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCC-CC-C
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHR-FP-F  322 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~-LP-f  322 (418)
                      +..++.+.++  .+|||+|||+|.++..|++.  +..++  ++|+++.+++.|+++    |+   +.++.+++.. +| .
T Consensus        63 l~~~~~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  138 (232)
T 3ntv_A           63 IKQLIRMNNV--KNILEIGTAIGYSSMQFASISDDIHVT--TIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENV  138 (232)
T ss_dssp             HHHHHHHHTC--CEEEEECCSSSHHHHHHHTTCTTCEEE--EEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHH
T ss_pred             HHHHHhhcCC--CEEEEEeCchhHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhh
Confidence            4444444444  58999999999999999984  45554  579999999877653    43   3455665544 45 5


Q ss_pred             CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          323 YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       323 ~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                      .+++||+|++.....      ....++.++.|+|||||++++.+..+.
T Consensus       139 ~~~~fD~V~~~~~~~------~~~~~l~~~~~~LkpgG~lv~d~~~~~  180 (232)
T 3ntv_A          139 NDKVYDMIFIDAAKA------QSKKFFEIYTPLLKHQGLVITDNVLYH  180 (232)
T ss_dssp             TTSCEEEEEEETTSS------SHHHHHHHHGGGEEEEEEEEEECTTGG
T ss_pred             ccCCccEEEEcCcHH------HHHHHHHHHHHhcCCCeEEEEeeCCcC
Confidence            578999999764322      234799999999999999999776543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.13  E-value=5.9e-11  Score=108.82  Aligned_cols=96  Identities=15%  Similarity=0.135  Sum_probs=71.6

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHc----CC--CceeecccCC-CCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHR-FPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~-LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++..++.++. .+  +++|+++.|++.++++    |+  +.++.+++.. ++..+++||+|++...++
T Consensus        56 ~~vLDlgcG~G~~~~~l~~~~~~~V--~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~  133 (202)
T 2fpo_A           56 AQCLDCFAGSGALGLEALSRYAAGA--TLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  133 (202)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCSEE--EEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             CeEEEeCCCcCHHHHHHHhcCCCEE--EEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence            4899999999999998888774 44  3589999999887653    43  3445566555 566778999999986655


Q ss_pred             CCCChhHHHHHHHHhh--ccccCCcEEEEEec
Q 037675          338 VGGQPEKLEFLMFDFD--RILRAGGLFWLDNF  367 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~--RVLRPGG~~ii~~~  367 (418)
                       ...   .+.++.++.  |+|||||++++...
T Consensus       134 -~~~---~~~~l~~l~~~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          134 -RGL---LEETINLLEDNGWLADEALIYVESE  161 (202)
T ss_dssp             -TTT---HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             -CCc---HHHHHHHHHhcCccCCCcEEEEEEC
Confidence             222   336777775  47999999988765

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.12  E-value=4.2e-10  Score=115.17  Aligned_cols=156  Identities=12%  Similarity=0.086  Sum_probs=102.1

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCC--CC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFP--FY  323 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LP--f~  323 (418)
                      .+..++...+|  .+|||+|||+|+.+..|++..  ..++  ++|+++.+++.+.++    |+ +.+..++...++  ++
T Consensus       237 ~~~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~v~--a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~  312 (429)
T 1sqg_A          237 GCMTWLAPQNG--EHILDLCAAPGGKTTHILEVAPEAQVV--AVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCG  312 (429)
T ss_dssp             THHHHHCCCTT--CEEEEESCTTCHHHHHHHHHCTTCEEE--EEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHT
T ss_pred             HHHHHcCCCCc--CeEEEECCCchHHHHHHHHHcCCCEEE--EECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcc
Confidence            34455566655  489999999999999999864  3443  579988888766553    54 344456777666  66


Q ss_pred             CCccceEEec------CcCcCCCC------hhHH-------HHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHH
Q 037675          324 DNVFDLVHAS------SGLDVGGQ------PEKL-------EFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIER  384 (418)
Q Consensus       324 d~sFDlV~s~------~~L~~~~~------~~~l-------e~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~  384 (418)
                      +++||+|++.      +++++..+      +.++       ..+|.++.++|||||++++++.....++..+.+..++++
T Consensus       313 ~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~  392 (429)
T 1sqg_A          313 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR  392 (429)
T ss_dssp             TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHh
Confidence            7899999962      23332211      1111       478999999999999999987655555555556666665


Q ss_pred             c-CcEEEE--------EEEcccCCCCccceEEEEEEEcC
Q 037675          385 F-GYKKLK--------WVVGEKGETGKSEVYLSAVLQKP  414 (418)
Q Consensus       385 ~-Gfk~l~--------W~~~~k~d~~~~e~~l~Ai~qKP  414 (418)
                      . +|+.+.        +.+-+..  ...+.++.|+++|.
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~P~~--~~~dGff~a~l~k~  429 (429)
T 1sqg_A          393 TADAELCETGTPEQPGKQNLPGA--EEGDGFFYAKLIKK  429 (429)
T ss_dssp             CTTCEECSSBCSSSBSEEECCCT--TSCCSEEEEEEEC-
T ss_pred             CCCCEEeCCCCCCCCeEEECCCC--CCCCceEEEEEEEC
Confidence            4 565442        1121211  24578999999984

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.12  E-value=8e-11  Score=113.78  Aligned_cols=116  Identities=12%  Similarity=0.042  Sum_probs=73.0

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC--------Ccee--ecccCCCCCCCCccce
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL--------FPLY--LSLDHRFPFYDNVFDL  329 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl--------i~~~--~~~~e~LPf~d~sFDl  329 (418)
                      +.+|  .+|||+|||+|.++.+++++ ..|+  ++|+++ |+..+.++..        +.++  .+++..+|  +++||+
T Consensus        72 ~~~g--~~VLDlGcGtG~~s~~la~~-~~V~--gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~  143 (265)
T 2oxt_A           72 VELT--GRVVDLGCGRGGWSYYAASR-PHVM--DVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDV  143 (265)
T ss_dssp             CCCC--EEEEEESCTTSHHHHHHHTS-TTEE--EEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSE
T ss_pred             CCCC--CEEEEeCcCCCHHHHHHHHc-CcEE--EEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcE
Confidence            3444  48999999999999999988 3443  357766 4322222211        2344  45666665  789999


Q ss_pred             EEecCcCcCCCChh--H--HHHHHHHhhccccCCc--EEEEEecccCchhHHHHHHHHHHH
Q 037675          330 VHASSGLDVGGQPE--K--LEFLMFDFDRILRAGG--LFWLDNFYCANDEKKSALTRLIER  384 (418)
Q Consensus       330 V~s~~~L~~~~~~~--~--le~~L~Ei~RVLRPGG--~~ii~~~~~~~ee~~~~~~~l~~~  384 (418)
                      |+|..+ +....+.  .  ...+|.++.|+|||||  .|++..+.....+..+.+..+...
T Consensus       144 V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~  203 (265)
T 2oxt_A          144 IMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRK  203 (265)
T ss_dssp             EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             EEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHH
Confidence            999766 4332221  1  1137899999999999  998876652223222344444444

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.12  E-value=1.7e-10  Score=105.93  Aligned_cols=108  Identities=25%  Similarity=0.278  Sum_probs=76.4

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccC-CCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDH-RFP  321 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e-~LP  321 (418)
                      .+..++...++  .+|||+|||+|.++..|++.   +..++  ++|+++.+++.++++    |+   +.++.+++. .++
T Consensus        55 ~l~~l~~~~~~--~~vLdiG~G~G~~~~~la~~~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  130 (225)
T 3tr6_A           55 LLALLVKLMQA--KKVIDIGTFTGYSAIAMGLALPKDGTLI--TCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLA  130 (225)
T ss_dssp             HHHHHHHHHTC--SEEEEECCTTSHHHHHHHTTCCTTCEEE--EEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred             HHHHHHHhhCC--CEEEEeCCcchHHHHHHHHhCCCCCEEE--EEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHH
Confidence            44444444444  48999999999999999987   45554  579999999877664    44   234455442 222


Q ss_pred             CCC-----CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          322 FYD-----NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       322 f~d-----~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                      ..+     ++||+|++...      ......++.++.|+|||||++++.+..+.
T Consensus       131 ~~~~~~~~~~fD~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  178 (225)
T 3tr6_A          131 ELIHAGQAWQYDLIYIDAD------KANTDLYYEESLKLLREGGLIAVDNVLRR  178 (225)
T ss_dssp             HHHTTTCTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred             HhhhccCCCCccEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            211     79999996542      23345899999999999999999887554

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.12  E-value=5.4e-11  Score=103.77  Aligned_cols=97  Identities=16%  Similarity=0.127  Sum_probs=70.6

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCC-CCC---CCCccceEEecCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHR-FPF---YDNVFDLVHASSGL  336 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~-LPf---~d~sFDlV~s~~~L  336 (418)
                      .+|||+|||+|.++..+++++..+  +++|+++.+++.++++    ++ +.++.++... ++.   .+++||+|++...+
T Consensus        43 ~~vLD~GcG~G~~~~~l~~~~~~v--~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~  120 (171)
T 1ws6_A           43 GRFLDPFAGSGAVGLEAASEGWEA--VLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY  120 (171)
T ss_dssp             CEEEEETCSSCHHHHHHHHTTCEE--EEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred             CeEEEeCCCcCHHHHHHHHCCCeE--EEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCC
Confidence            489999999999999999998764  4689999999877653    32 3445555444 222   13489999998776


Q ss_pred             cCCCChhHHHHHHHHhh--ccccCCcEEEEEeccc
Q 037675          337 DVGGQPEKLEFLMFDFD--RILRAGGLFWLDNFYC  369 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~--RVLRPGG~~ii~~~~~  369 (418)
                      +  ....   .++.++.  |+|||||++++.....
T Consensus       121 ~--~~~~---~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          121 A--MDLA---ALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             T--SCTT---HHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             c--hhHH---HHHHHHHhhcccCCCcEEEEEeCCc
Confidence            6  2223   4555666  9999999998877643

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.10  E-value=8.8e-11  Score=104.07  Aligned_cols=98  Identities=16%  Similarity=0.124  Sum_probs=71.2

Q ss_pred             CeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHc----CC---CceeecccCC----CCCCCCccceEEec
Q 037675          266 RIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHR----FPFYDNVFDLVHAS  333 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~----LPf~d~sFDlV~s~  333 (418)
                      .+|||+|||+|.++..+++++ ..++  ++|+++.+++.++++    ++   +.++.++...    +++.+++||+|++.
T Consensus        46 ~~vLD~GcG~G~~~~~~~~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~  123 (187)
T 2fhp_A           46 GMALDLYSGSGGLAIEAVSRGMDKSI--CIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD  123 (187)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCSEEE--EEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCEEEeCCccCHHHHHHHHcCCCEEE--EEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence            589999999999999888876 3453  589999999877653    43   3445555443    23347899999998


Q ss_pred             CcCcCCCChhHHHHHHHHh--hccccCCcEEEEEeccc
Q 037675          334 SGLDVGGQPEKLEFLMFDF--DRILRAGGLFWLDNFYC  369 (418)
Q Consensus       334 ~~L~~~~~~~~le~~L~Ei--~RVLRPGG~~ii~~~~~  369 (418)
                      ..++.. ..   +.++..+  .|+|||||++++.....
T Consensus       124 ~~~~~~-~~---~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          124 PPYAKQ-EI---VSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             CCGGGC-CH---HHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             CCCCch-hH---HHHHHHHHHhcccCCCCEEEEEeCCc
Confidence            775532 22   3566666  99999999998876644

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.10  E-value=1.1e-10  Score=113.50  Aligned_cols=112  Identities=13%  Similarity=0.072  Sum_probs=71.8

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC--------Ccee--ecccCCCCCCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL--------FPLY--LSLDHRFPFYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl--------i~~~--~~~~e~LPf~d~sFDlV~s~~~  335 (418)
                      .+|||+|||+|.++..++++ ..|+  ++|+++ |+..+.++..        +.++  .+++..+|  +++||+|+|..+
T Consensus        84 ~~VLDlGcGtG~~s~~la~~-~~V~--gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~  157 (276)
T 2wa2_A           84 GTVVDLGCGRGSWSYYAASQ-PNVR--EVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDIG  157 (276)
T ss_dssp             EEEEEESCTTCHHHHHHHTS-TTEE--EEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECCC
T ss_pred             CEEEEeccCCCHHHHHHHHc-CCEE--EEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECCC
Confidence            48999999999999999988 3443  367776 5433322221        2345  55677665  789999999866


Q ss_pred             CcCCCChh--H--HHHHHHHhhccccCCc--EEEEEecccCchhHHHHHHHHHHH
Q 037675          336 LDVGGQPE--K--LEFLMFDFDRILRAGG--LFWLDNFYCANDEKKSALTRLIER  384 (418)
Q Consensus       336 L~~~~~~~--~--le~~L~Ei~RVLRPGG--~~ii~~~~~~~ee~~~~~~~l~~~  384 (418)
                       +....+.  .  ...+|.++.|+|||||  .|++..+....++..+.+..+...
T Consensus       158 -~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~~~~~~~l~~l~~~  211 (276)
T 2wa2_A          158 -ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYSCDVLEALMKMQAR  211 (276)
T ss_dssp             -CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCSHHHHHHHHHHHHH
T ss_pred             -cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCchhHHHHHHHHHHH
Confidence             3322211  1  1137899999999999  998866653233222334444444

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.10  E-value=3.4e-10  Score=108.86  Aligned_cols=134  Identities=11%  Similarity=0.118  Sum_probs=87.4

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc--C-cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCC-
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER--N-VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPF-  322 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~--g-V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf-  322 (418)
                      .+..++...+|  .+|||+|||+|+++..|++.  + ..++  ++|+++.+++.++++    |+  +.+..++...++. 
T Consensus        74 l~~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~--avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~  149 (274)
T 3ajd_A           74 IPPIVLNPRED--DFILDMCAAPGGKTTHLAQLMKNKGTIV--AVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY  149 (274)
T ss_dssp             HHHHHHCCCTT--CEEEETTCTTCHHHHHHHHHTTTCSEEE--EEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH
T ss_pred             HHHHHhCCCCc--CEEEEeCCCccHHHHHHHHHcCCCCEEE--EECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh
Confidence            34455666666  48999999999999999874  4 4443  579999998876654    54  2344456665554 


Q ss_pred             ---CCCccceEEecC------cCcC---CCC------hhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHH
Q 037675          323 ---YDNVFDLVHASS------GLDV---GGQ------PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIER  384 (418)
Q Consensus       323 ---~d~sFDlV~s~~------~L~~---~~~------~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~  384 (418)
                         .+++||+|++.-      ++..   |..      ......++.++.++|||||+++++......++.++.+..++++
T Consensus       150 ~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~  229 (274)
T 3ajd_A          150 LLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQK  229 (274)
T ss_dssp             HHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHH
T ss_pred             hhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHh
Confidence               367899999862      2210   000      0122488999999999999998887644444444556666654


Q ss_pred             -cCcEEE
Q 037675          385 -FGYKKL  390 (418)
Q Consensus       385 -~Gfk~l  390 (418)
                       -+|+.+
T Consensus       230 ~~~~~~~  236 (274)
T 3ajd_A          230 RNDVELI  236 (274)
T ss_dssp             CSSEEEE
T ss_pred             CCCcEEe
Confidence             345543

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.09  E-value=1.5e-10  Score=107.45  Aligned_cols=108  Identities=20%  Similarity=0.266  Sum_probs=78.5

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCC-CCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHR-FPF  322 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~-LPf  322 (418)
                      .+..++...++  .+|||+|||+|.++..|++.  +..++  ++|+++.+++.|+++    |+   +.+..++... +|.
T Consensus        45 ~l~~~~~~~~~--~~vLdiG~G~G~~~~~la~~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  120 (233)
T 2gpy_A           45 SLLHLLKMAAP--ARILEIGTAIGYSAIRMAQALPEATIV--SIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEK  120 (233)
T ss_dssp             HHHHHHHHHCC--SEEEEECCTTSHHHHHHHHHCTTCEEE--EECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHH
T ss_pred             HHHHHHhccCC--CEEEEecCCCcHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh
Confidence            44444455444  48999999999999999987  45554  479999999888765    44   3444455444 344


Q ss_pred             C--CCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          323 Y--DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       323 ~--d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                      .  +++||+|++....+      ....++.++.++|||||++++.+..+.
T Consensus       121 ~~~~~~fD~I~~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~  164 (233)
T 2gpy_A          121 LELYPLFDVLFIDAAKG------QYRRFFDMYSPMVRPGGLILSDNVLFR  164 (233)
T ss_dssp             HTTSCCEEEEEEEGGGS------CHHHHHHHHGGGEEEEEEEEEETTTC-
T ss_pred             cccCCCccEEEECCCHH------HHHHHHHHHHHHcCCCeEEEEEcCCcC
Confidence            4  67899999976653      234889999999999999999876443

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.09  E-value=2.5e-10  Score=107.31  Aligned_cols=113  Identities=17%  Similarity=0.079  Sum_probs=76.9

Q ss_pred             HHHHHHcc-CCCCCCeEEEECCccChHHHHHhhc----CcEEEEeccCCCHHhHHHHHHc-------CC-----------
Q 037675          253 LIDDVLAL-GSGGIRIGFDIGGGSGTFAARMAER----NVTVITNTLNVDAPYSEFIAAR-------GL-----------  309 (418)
Q Consensus       253 ~I~~lL~l-~~g~~r~VLDvGCGtG~faa~La~~----gV~vv~~alD~s~~~l~~a~eR-------Gl-----------  309 (418)
                      +++.++.. ......+|||+|||+|.++..++++    +..+  +++|+++.+++.|+++       ++           
T Consensus        39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v--~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~  116 (250)
T 1o9g_A           39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQV--IASDVDPAPLELAAKNLALLSPAGLTARELERREQS  116 (250)
T ss_dssp             HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEE--EEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeE--EEEECCHHHHHHHHHHHHHhhhccccccchhhhhhh
Confidence            44555543 2223358999999999999999876    3444  3589999999887642       21           


Q ss_pred             -----------------Cc-------------eeecccCCCCC-----CCCccceEEecCcCcCCCC------hhHHHHH
Q 037675          310 -----------------FP-------------LYLSLDHRFPF-----YDNVFDLVHASSGLDVGGQ------PEKLEFL  348 (418)
Q Consensus       310 -----------------i~-------------~~~~~~e~LPf-----~d~sFDlV~s~~~L~~~~~------~~~le~~  348 (418)
                                       +.             +..++......     ..++||+|+|+..++....      ......+
T Consensus       117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~  196 (250)
T 1o9g_A          117 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGL  196 (250)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHH
T ss_pred             hhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHH
Confidence                             23             45555544211     3458999999765543322      3556789


Q ss_pred             HHHhhccccCCcEEEEEec
Q 037675          349 MFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       349 L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +.++.|+|||||++++.+.
T Consensus       197 l~~~~~~LkpgG~l~~~~~  215 (250)
T 1o9g_A          197 LRSLASALPAHAVIAVTDR  215 (250)
T ss_dssp             HHHHHHHSCTTCEEEEEES
T ss_pred             HHHHHHhcCCCcEEEEeCc
Confidence            9999999999999988543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.08  E-value=6.4e-10  Score=106.29  Aligned_cols=118  Identities=16%  Similarity=0.199  Sum_probs=83.9

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCcc
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVF  327 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sF  327 (418)
                      +.+.++  .+|||+|||+|.++..+++.   +..++  ++|.++.+++.|+++    |+   +.+..++.... +++++|
T Consensus       108 ~~~~~~--~~VLDiG~G~G~~~~~la~~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~  182 (277)
T 1o54_A          108 LDVKEG--DRIIDTGVGSGAMCAVLARAVGSSGKVF--AYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDV  182 (277)
T ss_dssp             TTCCTT--CEEEEECCTTSHHHHHHHHHTTTTCEEE--EECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSE
T ss_pred             hCCCCC--CEEEEECCcCCHHHHHHHHHhCCCcEEE--EEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCcc
Confidence            344555  48999999999999999887   34553  579999999887764    43   23444555554 667899


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      |+|++.     ..++.   .++.++.++|||||.+++..+..  +.. ..+...++..||..++
T Consensus       183 D~V~~~-----~~~~~---~~l~~~~~~L~pgG~l~~~~~~~--~~~-~~~~~~l~~~gf~~~~  235 (277)
T 1o54_A          183 DALFLD-----VPDPW---NYIDKCWEALKGGGRFATVCPTT--NQV-QETLKKLQELPFIRIE  235 (277)
T ss_dssp             EEEEEC-----CSCGG---GTHHHHHHHEEEEEEEEEEESSH--HHH-HHHHHHHHHSSEEEEE
T ss_pred             CEEEEC-----CcCHH---HHHHHHHHHcCCCCEEEEEeCCH--HHH-HHHHHHHHHCCCceeE
Confidence            999983     22332   78899999999999998876532  122 2355566779998765

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.08  E-value=1.1e-10  Score=110.29  Aligned_cols=126  Identities=15%  Similarity=0.134  Sum_probs=85.0

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc------CcEEEEeccCCCHHhHHHHHHcC-CCceeecccCC---CCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER------NVTVITNTLNVDAPYSEFIAARG-LFPLYLSLDHR---FPF  322 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~------gV~vv~~alD~s~~~l~~a~eRG-li~~~~~~~e~---LPf  322 (418)
                      .+.+++...++  .+|||||||+|..+..|++.      +..++  ++|+++.|++.|+..+ -+.++.++...   +++
T Consensus        72 ~l~~~l~~~~~--~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~--gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~  147 (236)
T 2bm8_A           72 VYHDMLWELRP--RTIVELGVYNGGSLAWFRDLTKIMGIDCQVI--GIDRDLSRCQIPASDMENITLHQGDCSDLTTFEH  147 (236)
T ss_dssp             HHHHHHHHHCC--SEEEEECCTTSHHHHHHHHHHHHTTCCCEEE--EEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGG
T ss_pred             HHHHHHHhcCC--CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEE--EEeCChHHHHHHhccCCceEEEECcchhHHHHHh
Confidence            44455544333  48999999999999999886      45554  5799998887665321 23556677766   365


Q ss_pred             CCC-ccceEEecCcCcCCCChhHHHHHHHHhhc-cccCCcEEEEEec--ccCchhHHHHHHHHHHHc--CcEE
Q 037675          323 YDN-VFDLVHASSGLDVGGQPEKLEFLMFDFDR-ILRAGGLFWLDNF--YCANDEKKSALTRLIERF--GYKK  389 (418)
Q Consensus       323 ~d~-sFDlV~s~~~L~~~~~~~~le~~L~Ei~R-VLRPGG~~ii~~~--~~~~ee~~~~~~~l~~~~--Gfk~  389 (418)
                      .++ +||+|++... | .    ....++.++.| +|||||++++.+.  .+... ..+.+..+++..  +|+.
T Consensus       148 ~~~~~fD~I~~d~~-~-~----~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~-~~~~~~~~l~~~~~~f~~  213 (236)
T 2bm8_A          148 LREMAHPLIFIDNA-H-A----NTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRY-APQLFSEYLGAFRDVLSM  213 (236)
T ss_dssp             GSSSCSSEEEEESS-C-S----SHHHHHHHHHHHTCCTTCEEEECSCHHHHHHH-CHHHHHHHHHTTTTTEEE
T ss_pred             hccCCCCEEEECCc-h-H----hHHHHHHHHHHhhCCCCCEEEEEeCccccccc-CHHHHHHHHHhCcccEEE
Confidence            554 7999998654 2 1    23479999998 9999999999764  21111 112466677766  4543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.07  E-value=3.5e-10  Score=103.17  Aligned_cols=98  Identities=19%  Similarity=0.143  Sum_probs=72.4

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCC-CCc
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFY-DNV  326 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~-d~s  326 (418)
                      .+.+.++  .+|||+|||+|.++..+++.+   ..++  ++|+++.+++.++++    |+  +.+..++... +++ +++
T Consensus        72 ~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~  146 (215)
T 2yxe_A           72 LLDLKPG--MKVLEIGTGCGYHAAVTAEIVGEDGLVV--SIERIPELAEKAERTLRKLGYDNVIVIVGDGTL-GYEPLAP  146 (215)
T ss_dssp             HTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTSEEE--EEESCHHHHHHHHHHHHHHTCTTEEEEESCGGG-CCGGGCC
T ss_pred             hhCCCCC--CEEEEECCCccHHHHHHHHHhCCCCEEE--EEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc-CCCCCCC
Confidence            3344444  489999999999999998874   5554  579999999887764    33  2334444432 333 678


Q ss_pred             cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      ||+|++..++++..         .++.++|||||++++....
T Consensus       147 fD~v~~~~~~~~~~---------~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          147 YDRIYTTAAGPKIP---------EPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             EEEEEESSBBSSCC---------HHHHHTEEEEEEEEEEESS
T ss_pred             eeEEEECCchHHHH---------HHHHHHcCCCcEEEEEECC
Confidence            99999999998764         2889999999999887653

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.07  E-value=2.1e-10  Score=112.49  Aligned_cols=97  Identities=20%  Similarity=0.190  Sum_probs=74.1

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhcCc---EEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCcc
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAERNV---TVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVF  327 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~gV---~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sF  327 (418)
                      .+.+.++  .+|||+|||+|.++..+++.+.   .++  ++|+++.+++.++++    |+  +.+..++....+..+++|
T Consensus        70 ~l~~~~~--~~VLDiGcG~G~~~~~la~~~~~~~~v~--gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~f  145 (317)
T 1dl5_A           70 WVGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVV--SVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPY  145 (317)
T ss_dssp             HTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTCEEE--EEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             hcCCCCc--CEEEEecCCchHHHHHHHHhcCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCe
Confidence            3345555  4899999999999999998732   243  479999999887764    54  344456666655567899


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      |+|++..++++..         .++.++|||||++++..
T Consensus       146 D~Iv~~~~~~~~~---------~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          146 DVIFVTVGVDEVP---------ETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             EEEEECSBBSCCC---------HHHHHHEEEEEEEEEEB
T ss_pred             EEEEEcCCHHHHH---------HHHHHhcCCCcEEEEEE
Confidence            9999999998764         37889999999998864

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.06  E-value=1.8e-10  Score=108.30  Aligned_cols=143  Identities=13%  Similarity=0.188  Sum_probs=86.8

Q ss_pred             cHHHHHHHHccCCC---CCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC---Cceeeccc
Q 037675          250 NDFLIDDVLALGSG---GIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLD  317 (418)
Q Consensus       250 y~~~I~~lL~l~~g---~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~  317 (418)
                      +...+..++.....   ...+|||+|||+|.++..|+++  +..++  ++|+++.|++.|+++    |+   +.++.+++
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~--gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  125 (254)
T 2h00_A           48 YIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFL--ATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQ  125 (254)
T ss_dssp             HHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEE--EEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             HHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEE--EEECCHHHHHHHHHHHHHcCCCccEEEEEcch
Confidence            44456666553221   2358999999999999888876  55554  579999999887653    44   34555665


Q ss_pred             CCC---CCC---CCccceEEecCcCcCCC-C-----------hhHHHHHHHHhhccccCCcEEEEEeccc----------
Q 037675          318 HRF---PFY---DNVFDLVHASSGLDVGG-Q-----------PEKLEFLMFDFDRILRAGGLFWLDNFYC----------  369 (418)
Q Consensus       318 e~L---Pf~---d~sFDlV~s~~~L~~~~-~-----------~~~le~~L~Ei~RVLRPGG~~ii~~~~~----------  369 (418)
                      +..   +++   +++||+|+++-.+++.. +           ......++.++.|+|||||.+.+.+...          
T Consensus       126 ~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~  205 (254)
T 2h00_A          126 KTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRL  205 (254)
T ss_dssp             TCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGB
T ss_pred             hhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccce
Confidence            542   454   36899999985544322 0           0111245678999999998775432210          


Q ss_pred             -------CchhHHHHHHHHHHHcCcEEEEEEE
Q 037675          370 -------ANDEKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       370 -------~~ee~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                             ......+.+.+++++.||+.+....
T Consensus       206 g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~  237 (254)
T 2h00_A          206 RWYSCMLGKKCSLAPLKEELRIQGVPKVTYTE  237 (254)
T ss_dssp             SCEEEEESSTTSHHHHHHHHHHTTCSEEEEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHHcCCCceEEEE
Confidence                   0011124578889999999887543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.06  E-value=1.4e-09  Score=100.89  Aligned_cols=117  Identities=15%  Similarity=0.171  Sum_probs=80.2

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEE
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVH  331 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~  331 (418)
                      .+.++  .+|||+|||+|.++..+++.+..++  ++|+++.+++.++++    ++   +.+..++.....++++.||+|+
T Consensus        88 ~~~~~--~~vldiG~G~G~~~~~l~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  163 (248)
T 2yvl_A           88 NLNKE--KRVLEFGTGSGALLAVLSEVAGEVW--TFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAF  163 (248)
T ss_dssp             TCCTT--CEEEEECCTTSHHHHHHHHHSSEEE--EECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEE
T ss_pred             CCCCC--CEEEEeCCCccHHHHHHHHhCCEEE--EEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEE
Confidence            44444  4899999999999999998865554  579999999887764    43   2334455555433678999999


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      +.     ..++.   .++.++.++|||||++++..+..  +... .+...++.. |..+.
T Consensus       164 ~~-----~~~~~---~~l~~~~~~L~~gG~l~~~~~~~--~~~~-~~~~~l~~~-f~~~~  211 (248)
T 2yvl_A          164 VD-----VREPW---HYLEKVHKSLMEGAPVGFLLPTA--NQVI-KLLESIENY-FGNLE  211 (248)
T ss_dssp             EC-----SSCGG---GGHHHHHHHBCTTCEEEEEESSH--HHHH-HHHHHSTTT-EEEEE
T ss_pred             EC-----CcCHH---HHHHHHHHHcCCCCEEEEEeCCH--HHHH-HHHHHHHhh-CCcce
Confidence            83     22332   67889999999999998877643  1222 234444444 76544

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.06  E-value=2.1e-10  Score=104.77  Aligned_cols=96  Identities=16%  Similarity=0.108  Sum_probs=71.2

Q ss_pred             CeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCC-CCCCCCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHR-FPFYDNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~-LPf~d~sFDlV~s~~  334 (418)
                      .+|||+|||+|..+..|++.   +..++  ++|+++.+++.++++    |+   +.++.++... +|..++ ||+|++..
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~  134 (210)
T 3c3p_A           58 QLVVVPGDGLGCASWWFARAISISSRVV--MIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC  134 (210)
T ss_dssp             SEEEEESCGGGHHHHHHHTTSCTTCEEE--EEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred             CEEEEEcCCccHHHHHHHHhCCCCCEEE--EEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence            48999999999999999876   44553  579999999887653    43   2345555433 355567 99999863


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                      ..      .....++.++.|+|||||++++.+..+.
T Consensus       135 ~~------~~~~~~l~~~~~~LkpgG~lv~~~~~~~  164 (210)
T 3c3p_A          135 DV------FNGADVLERMNRCLAKNALLIAVNALRR  164 (210)
T ss_dssp             TT------SCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred             Ch------hhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence            21      2234899999999999999998776543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.04  E-value=5.8e-10  Score=104.92  Aligned_cols=97  Identities=13%  Similarity=0.234  Sum_probs=68.7

Q ss_pred             CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc------------CC--CceeecccCC-CC--CCCCc
Q 037675          266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR------------GL--FPLYLSLDHR-FP--FYDNV  326 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR------------Gl--i~~~~~~~e~-LP--f~d~s  326 (418)
                      .+|||+|||+|.++..|++.+  ..++  ++|+++.+++.++++            |+  +.++.+++.. ++  +++++
T Consensus        51 ~~vLDiGcG~G~~~~~la~~~~~~~v~--gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           51 VTIADIGCGFGGLMIDLSPAFPEDLIL--GMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSTTSEEE--EEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CEEEEEcCCCCHHHHHHHHhCCCCCEE--EEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            489999999999999999875  3454  579999999877543            54  2344566654 66  77899


Q ss_pred             cceEEecCcCcCCCChh------HHHHHHHHhhccccCCcEEEEE
Q 037675          327 FDLVHASSGLDVGGQPE------KLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       327 FDlV~s~~~L~~~~~~~------~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      ||.|+....- .|....      -.+.++.++.|+|||||+|++.
T Consensus       129 ~d~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          129 LSKMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             EEEEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCEEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence            9999854211 111000      0037899999999999999884

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.04  E-value=3.7e-09  Score=97.45  Aligned_cols=118  Identities=12%  Similarity=0.140  Sum_probs=76.8

Q ss_pred             CeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHc----CCCceeecccCCC---CCCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAAR----GLFPLYLSLDHRF---PFYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eR----Gli~~~~~~~e~L---Pf~d~sFDlV~s~~~  335 (418)
                      .+|||+|||+|.++..|+++ +  ..++  ++|+++.+++.+.++    .-+.+..++....   +..+++||+|++...
T Consensus        75 ~~vLDlG~G~G~~~~~la~~~~~~~~v~--~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~  152 (227)
T 1g8a_A           75 KSVLYLGIASGTTASHVSDIVGWEGKIF--GIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA  152 (227)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHCTTSEEE--EEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred             CEEEEEeccCCHHHHHHHHHhCCCeEEE--EEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC
Confidence            58999999999999999976 3  4453  579999888766542    1224455655552   122468999998644


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEecc-cC--c---hh-HHHHHHHHHHHcCcEEEEE
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY-CA--N---DE-KKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~-~~--~---ee-~~~~~~~l~~~~Gfk~l~W  392 (418)
                           .+.....++.++.|+|||||++++.... ..  .   .. ..+++..+ +.. |+.+..
T Consensus       153 -----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~  209 (227)
T 1g8a_A          153 -----QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIER  209 (227)
T ss_dssp             -----STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEE
T ss_pred             -----CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeE
Confidence                 1222335699999999999999887221 11  1   11 12345555 555 887763

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.04  E-value=8.4e-10  Score=114.87  Aligned_cols=158  Identities=15%  Similarity=0.180  Sum_probs=105.0

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc--C-cEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCC-CC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER--N-VTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFP-FY  323 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~--g-V~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LP-f~  323 (418)
                      .+..++...+|  .+|||+|||+|+.+..|+++  + ..+  +++|+++.+++.++++    |+ +.+..++...++ +.
T Consensus        92 l~a~~L~~~~g--~~VLDlgaGpG~kt~~LA~~~~~~g~V--~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~  167 (464)
T 3m6w_A           92 AVGVLLDPKPG--ERVLDLAAAPGGKTTHLAARMGGKGLL--LANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAF  167 (464)
T ss_dssp             HHHHHHCCCTT--CEEEESSCTTCHHHHHHHHHTTTCSEE--EEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHH
T ss_pred             HHHHhcCcCCC--CEEEEEcCCcCHHHHHHHHhCCCCCEE--EEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhc
Confidence            44556666666  48999999999999999875  2 344  3579999999876653    55 334445666665 45


Q ss_pred             CCccceEEec------CcCcCCCC------hhHH-------HHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHH
Q 037675          324 DNVFDLVHAS------SGLDVGGQ------PEKL-------EFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIER  384 (418)
Q Consensus       324 d~sFDlV~s~------~~L~~~~~------~~~l-------e~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~  384 (418)
                      +++||+|++.      .++....+      +.++       ..+|.++.++|||||+++++......++.++.+..++++
T Consensus       168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~  247 (464)
T 3m6w_A          168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKA  247 (464)
T ss_dssp             CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHH
Confidence            7899999952      22321111      1111       578999999999999998887655556666677788887


Q ss_pred             c-CcEEEEEEE------cc--------------cCCC--CccceEEEEEEEcC
Q 037675          385 F-GYKKLKWVV------GE--------------KGET--GKSEVYLSAVLQKP  414 (418)
Q Consensus       385 ~-Gfk~l~W~~------~~--------------k~d~--~~~e~~l~Ai~qKP  414 (418)
                      . +|+.+....      +.              +.-+  ...+.++.|+++|.
T Consensus       248 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~A~l~k~  300 (464)
T 3m6w_A          248 HPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGEGHFLARFRKE  300 (464)
T ss_dssp             CTTEEEECCCCSTTSEECCGGGTTTCGGGGGSEEECTTTSSSSCEEEEEEEEC
T ss_pred             CCCcEEEecccccccccCcccccccccccCCeEEECCCCCCceeEEEEEEEEC
Confidence            6 566543211      00              0001  24688999999996

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.03  E-value=3.1e-10  Score=112.50  Aligned_cols=99  Identities=20%  Similarity=0.252  Sum_probs=74.8

Q ss_pred             CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc----CCC-ceeecccCCCCCCCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR----GLF-PLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR----Gli-~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      .+|||+|||+|.++..+++++  ..++  ++|+++.+++.++++    ++. .++.++...  +.+++||+|+++..+|+
T Consensus       198 ~~VLDlGcG~G~~~~~la~~~~~~~v~--~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~--~~~~~fD~Iv~~~~~~~  273 (343)
T 2pjd_A          198 GKVLDVGCGAGVLSVAFARHSPKIRLT--LCDVSAPAVEASRATLAANGVEGEVFASNVFS--EVKGRFDMIISNPPFHD  273 (343)
T ss_dssp             SBCCBTTCTTSHHHHHHHHHCTTCBCE--EEESBHHHHHHHHHHHHHTTCCCEEEECSTTT--TCCSCEEEEEECCCCCS
T ss_pred             CeEEEecCccCHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHHhCCCCEEEEccccc--cccCCeeEEEECCCccc
Confidence            489999999999999999875  3443  479999999877664    441 233444443  44789999999998875


Q ss_pred             CC--ChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          339 GG--QPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       339 ~~--~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      ..  .....+.++.++.|+|||||.+++....
T Consensus       274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             SSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             CccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            21  2344678999999999999999887653

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.03  E-value=6.1e-10  Score=112.55  Aligned_cols=100  Identities=10%  Similarity=0.054  Sum_probs=73.8

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CC-----CceeecccCCCCCCCCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GL-----FPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gl-----i~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      .+|||+|||+|.++..++++  +..++  ++|+++.+++.++++    |+     +.++.++... ++++++||+|+++-
T Consensus       224 ~~VLDlGcG~G~~s~~la~~~p~~~V~--gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~np  300 (375)
T 4dcm_A          224 GEIVDLGCGNGVIGLTLLDKNPQAKVV--FVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNP  300 (375)
T ss_dssp             SEEEEETCTTCHHHHHHHHHCTTCEEE--EEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECC
T ss_pred             CeEEEEeCcchHHHHHHHHHCCCCEEE--EEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECC
Confidence            58999999999999999988  45654  589999999877653    43     1224555555 56788999999998


Q ss_pred             cCcCC--CChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          335 GLDVG--GQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       335 ~L~~~--~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      .+|+.  ........++.++.|+|||||.+++....
T Consensus       301 pfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~  336 (375)
T 4dcm_A          301 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  336 (375)
T ss_dssp             CC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             CcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence            88742  22233447899999999999999887643

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.02  E-value=1.4e-09  Score=104.95  Aligned_cols=121  Identities=12%  Similarity=0.069  Sum_probs=80.5

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCC-CHHhHHHHHHcC---------C-------Cceee-cccCCC-CC---
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNV-DAPYSEFIAARG---------L-------FPLYL-SLDHRF-PF---  322 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~-s~~~l~~a~eRG---------l-------i~~~~-~~~e~L-Pf---  322 (418)
                      .+|||+|||+|.++..+++.+. .++  ++|+ ++.+++.++++-         +       +.+.. ++.... .+   
T Consensus        81 ~~vLDlG~G~G~~~~~~a~~~~~~v~--~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  158 (281)
T 3bzb_A           81 KTVCELGAGAGLVSIVAFLAGADQVV--ATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC  158 (281)
T ss_dssp             CEEEETTCTTSHHHHHHHHTTCSEEE--EEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred             CeEEEecccccHHHHHHHHcCCCEEE--EEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence            4899999999999999998875 554  5899 899988765532         1       12221 122211 11   


Q ss_pred             -CCCccceEEecCcCcCCCChhHHHHHHHHhhcccc---C--CcEEEEEecccCc--hhHHHHHHHHHHHcC-cEEEE
Q 037675          323 -YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILR---A--GGLFWLDNFYCAN--DEKKSALTRLIERFG-YKKLK  391 (418)
Q Consensus       323 -~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLR---P--GG~~ii~~~~~~~--ee~~~~~~~l~~~~G-fk~l~  391 (418)
                       ++++||+|+++.++++..   ..+.++.++.++||   |  ||.+++.......  .+....+...++..| |+...
T Consensus       159 ~~~~~fD~Ii~~dvl~~~~---~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~  233 (281)
T 3bzb_A          159 TGLQRFQVVLLADLLSFHQ---AHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEP  233 (281)
T ss_dssp             HSCSSBSEEEEESCCSCGG---GHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEE
T ss_pred             ccCCCCCEEEEeCcccChH---HHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEE
Confidence             468899999999888753   34589999999999   9  9987664221111  111123556778889 87654

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.01  E-value=5.8e-10  Score=108.93  Aligned_cols=104  Identities=13%  Similarity=0.024  Sum_probs=74.9

Q ss_pred             CCCeEEEECCcc--ChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc--CC----CceeecccCCCC------CCCCc
Q 037675          264 GIRIGFDIGGGS--GTFAARMAER---NVTVITNTLNVDAPYSEFIAAR--GL----FPLYLSLDHRFP------FYDNV  326 (418)
Q Consensus       264 ~~r~VLDvGCGt--G~faa~La~~---gV~vv~~alD~s~~~l~~a~eR--Gl----i~~~~~~~e~LP------f~d~s  326 (418)
                      .++.|||+|||+  +.+...++.+   +..++  ++|.|+.|++.++++  +.    +.++.++..+++      ...++
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv--~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~  155 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVV--YVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDT  155 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEE--EEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTT
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEE--EEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccc
Confidence            468999999997  3344444432   45664  479999999988764  21    234556666542      11456


Q ss_pred             cc-----eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675          327 FD-----LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC  369 (418)
Q Consensus       327 FD-----lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~  369 (418)
                      ||     .|+++.+|||..+.+....++.++.++|+|||+|+++++..
T Consensus       156 ~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~  203 (277)
T 3giw_A          156 LDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA  203 (277)
T ss_dssp             CCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred             cCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence            76     58889999999876545689999999999999999997643

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.00  E-value=2.2e-10  Score=107.17  Aligned_cols=96  Identities=18%  Similarity=0.180  Sum_probs=70.2

Q ss_pred             CeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc----CCC----ceeecccCC-CC-CCCCccceEEe
Q 037675          266 RIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR----GLF----PLYLSLDHR-FP-FYDNVFDLVHA  332 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR----Gli----~~~~~~~e~-LP-f~d~sFDlV~s  332 (418)
                      .+|||+|||+|..+..|++.   +..++  ++|+++.+++.|+++    |+.    .+..+++.. ++ +++++||+|++
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~--~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~  135 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLT--CIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG  135 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEE--EECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEE--EEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence            38999999999999999874   44553  479999999877653    442    334454433 33 33789999998


Q ss_pred             cCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675          333 SSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC  369 (418)
Q Consensus       333 ~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~  369 (418)
                      .....      ....++.++.|+|||||++++.+..+
T Consensus       136 d~~~~------~~~~~l~~~~~~LkpGG~lv~dn~~~  166 (221)
T 3dr5_A          136 QVSPM------DLKALVDAAWPLLRRGGALVLADALL  166 (221)
T ss_dssp             CCCTT------THHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred             cCcHH------HHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            64322      23478999999999999999987654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.99  E-value=1.8e-09  Score=112.16  Aligned_cols=157  Identities=13%  Similarity=0.165  Sum_probs=105.2

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc--C-cEEEEeccCCCHHhHHHHHH----cCCC--ceeecccCCCC-C
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER--N-VTVITNTLNVDAPYSEFIAA----RGLF--PLYLSLDHRFP-F  322 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~--g-V~vv~~alD~s~~~l~~a~e----RGli--~~~~~~~e~LP-f  322 (418)
                      ++..++...+|  .+|||+|||+|+.+..|++.  + -.++  ++|+++.+++.+++    .|+.  .+..++...++ +
T Consensus        96 l~~~~L~~~~g--~~VLDlcaGpGgkt~~lA~~~~~~g~V~--AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~  171 (456)
T 3m4x_A           96 IVGTAAAAKPG--EKVLDLCAAPGGKSTQLAAQMKGKGLLV--TNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPH  171 (456)
T ss_dssp             HHHHHHCCCTT--CEEEESSCTTCHHHHHHHHHHTTCSEEE--EECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHH
T ss_pred             HHHHHcCCCCC--CEEEEECCCcCHHHHHHHHHcCCCCEEE--EEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhh
Confidence            44556666666  48999999999999999875  2 3443  57999988876654    3553  23345555554 3


Q ss_pred             CCCccceEEecC------cCcCCCChh---------------HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHH
Q 037675          323 YDNVFDLVHASS------GLDVGGQPE---------------KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRL  381 (418)
Q Consensus       323 ~d~sFDlV~s~~------~L~~~~~~~---------------~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l  381 (418)
                      .+++||+|++.-      ++..  +++               ....+|.++.++|||||+++++......++.++.+..+
T Consensus       172 ~~~~FD~Il~DaPCSg~G~~rr--~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~  249 (456)
T 3m4x_A          172 FSGFFDRIVVDAPCSGEGMFRK--DPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWL  249 (456)
T ss_dssp             HTTCEEEEEEECCCCCGGGTTT--CHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHH
T ss_pred             ccccCCEEEECCCCCCcccccc--CHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHH
Confidence            578999999732      2221  111               11268999999999999998887655566667778888


Q ss_pred             HHHcCcEEEEEEEc----------------c---cCCC--CccceEEEEEEEcCC
Q 037675          382 IERFGYKKLKWVVG----------------E---KGET--GKSEVYLSAVLQKPV  415 (418)
Q Consensus       382 ~~~~Gfk~l~W~~~----------------~---k~d~--~~~e~~l~Ai~qKP~  415 (418)
                      +++.+|+.+.....                .   +.-+  ...+.++.|+++|.-
T Consensus       250 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFF~A~l~k~~  304 (456)
T 3m4x_A          250 VENYPVTIEEIPLTQSVSSGRSEWGSVAGLEKTIRIWPHKDQGEGHFVAKLTFHG  304 (456)
T ss_dssp             HHHSSEEEECCCCSSCCEECCGGGSSSTTGGGSEEECTTTSSSSCEEEEEEEECS
T ss_pred             HHhCCCEEEeccccccccccccccccccccCCeEEECCCCCCCcCeEEEEEEECC
Confidence            99988765532110                0   0001  246889999999964

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.99  E-value=1.1e-09  Score=112.98  Aligned_cols=104  Identities=14%  Similarity=0.088  Sum_probs=72.4

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc-Cc-EEEEeccCCCHHhHHHH-------HH----cCC----CceeecccCC--
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER-NV-TVITNTLNVDAPYSEFI-------AA----RGL----FPLYLSLDHR--  319 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~-gV-~vv~~alD~s~~~l~~a-------~e----RGl----i~~~~~~~e~--  319 (418)
                      .+.++  .+|||+|||+|.++..|++. +. .++  ++|+++.+++.|       ++    .|+    +.+..++...  
T Consensus       239 ~l~~g--~~VLDLGCGsG~la~~LA~~~g~~~V~--GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~  314 (433)
T 1u2z_A          239 QLKKG--DTFMDLGSGVGNCVVQAALECGCALSF--GCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDN  314 (433)
T ss_dssp             TCCTT--CEEEEESCTTSHHHHHHHHHHCCSEEE--EEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTC
T ss_pred             CCCCC--CEEEEeCCCcCHHHHHHHHHCCCCEEE--EEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccc
Confidence            34444  58999999999999999986 53 454  579998877766       44    242    2233432221  


Q ss_pred             CCC--CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          320 FPF--YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       320 LPf--~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                      .++  ..++||+|+++.++. .   .++..+|.|+.|+|||||.+++.+++..
T Consensus       315 ~~~~~~~~~FDvIvvn~~l~-~---~d~~~~L~el~r~LKpGG~lVi~d~f~p  363 (433)
T 1u2z_A          315 NRVAELIPQCDVILVNNFLF-D---EDLNKKVEKILQTAKVGCKIISLKSLRS  363 (433)
T ss_dssp             HHHHHHGGGCSEEEECCTTC-C---HHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred             cccccccCCCCEEEEeCccc-c---ccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence            123  357899999876662 2   3456889999999999999999876543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.99  E-value=8.2e-10  Score=108.67  Aligned_cols=99  Identities=16%  Similarity=0.182  Sum_probs=68.6

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHc-----------------CCCceeecc
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAAR-----------------GLFPLYLSL  316 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eR-----------------Gli~~~~~~  316 (418)
                      .+.+.+|  .+|||+|||+|.++..|++. |  ..++  ++|+++.+++.|+++                 .-+.+..++
T Consensus       100 ~l~~~~g--~~VLDiG~G~G~~~~~la~~~g~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d  175 (336)
T 2b25_A          100 MMDINPG--DTVLEAGSGSGGMSLFLSKAVGSQGRVI--SFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  175 (336)
T ss_dssp             HHTCCTT--CEEEEECCTTSHHHHHHHHHHCTTCEEE--EEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             hcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCCceEE--EEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence            3455555  48999999999999999986 4  4553  579999999887663                 123445566


Q ss_pred             cCCC--CCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          317 DHRF--PFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       317 ~e~L--Pf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ...+  ++++++||+|++.. ..++       .++.++.|+|||||++++..+
T Consensus       176 ~~~~~~~~~~~~fD~V~~~~-~~~~-------~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          176 ISGATEDIKSLTFDAVALDM-LNPH-------VTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             TTCCC-------EEEEEECS-SSTT-------TTHHHHGGGEEEEEEEEEEES
T ss_pred             hHHcccccCCCCeeEEEECC-CCHH-------HHHHHHHHhcCCCcEEEEEeC
Confidence            6665  56778999999843 2222       467899999999999987654

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.99  E-value=8.9e-10  Score=101.37  Aligned_cols=91  Identities=19%  Similarity=0.149  Sum_probs=69.5

Q ss_pred             CeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHc----C-------CCceeecccCCCCCCCCccceEE
Q 037675          266 RIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAAR----G-------LFPLYLSLDHRFPFYDNVFDLVH  331 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eR----G-------li~~~~~~~e~LPf~d~sFDlV~  331 (418)
                      .+|||+|||+|.++..|++. +  ..++  ++|+++.+++.++++    |       .+.+..++....+..+++||+|+
T Consensus        79 ~~vLDiG~G~G~~~~~la~~~~~~~~v~--~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~  156 (226)
T 1i1n_A           79 AKALDVGSGSGILTACFARMVGCTGKVI--GIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH  156 (226)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCTTCEEE--EEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred             CEEEEEcCCcCHHHHHHHHHhCCCcEEE--EEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEE
Confidence            58999999999999999876 3  3553  579999999877653    2       23445556655556678899999


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +...+++.         +.++.++|||||++++...
T Consensus       157 ~~~~~~~~---------~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          157 VGAAAPVV---------PQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             ECSBBSSC---------CHHHHHTEEEEEEEEEEES
T ss_pred             ECCchHHH---------HHHHHHhcCCCcEEEEEEe
Confidence            98877654         3488999999999988754

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.98  E-value=2.6e-09  Score=107.23  Aligned_cols=119  Identities=12%  Similarity=0.123  Sum_probs=84.6

Q ss_pred             CeEEEECCccChHHHHHhhcCc--EEEEeccCCCHHhHHHHHHc----CC--CceeecccCC-CCC-CCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNV--TVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHR-FPF-YDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV--~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~-LPf-~d~sFDlV~s~~~  335 (418)
                      .+|||+| |+|.++..++..+.  .++  ++|+++.|++.|+++    |+  +.++.++... +|. .+++||+|+++..
T Consensus       174 ~~VLDlG-G~G~~~~~la~~~~~~~v~--~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p  250 (373)
T 2qm3_A          174 KDIFVLG-DDDLTSIALMLSGLPKRIA--VLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP  250 (373)
T ss_dssp             CEEEEES-CTTCHHHHHHHHTCCSEEE--EECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred             CEEEEEC-CCCHHHHHHHHhCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence            5899999 99999999988753  553  589999999887664    54  4555677776 774 5679999999876


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEE-EEEeccc-CchhHHHHHHHHHH-HcCcEEEE
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLF-WLDNFYC-ANDEKKSALTRLIE-RFGYKKLK  391 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~-ii~~~~~-~~ee~~~~~~~l~~-~~Gfk~l~  391 (418)
                      ++..    ++..++.++.|+|||||.+ +++.... ........+..++. ..||+...
T Consensus       251 ~~~~----~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  305 (373)
T 2qm3_A          251 ETLE----AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVITD  305 (373)
T ss_dssp             SSHH----HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEE
T ss_pred             CchH----HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhh
Confidence            5543    2468999999999999944 4443221 11222244566666 78886543

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.98  E-value=2.8e-10  Score=107.81  Aligned_cols=108  Identities=15%  Similarity=0.206  Sum_probs=74.4

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHH----HcCC---CceeecccCC-CC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIA----ARGL---FPLYLSLDHR-FP  321 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~----eRGl---i~~~~~~~e~-LP  321 (418)
                      ++..++.+..+  ++|||+|||+|..+..|++.   +..++  ++|+++.+++.|+    +.|+   +.++.+++.. ++
T Consensus        51 ~l~~l~~~~~~--~~VLDiG~G~G~~t~~la~~~~~~~~v~--~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~  126 (242)
T 3r3h_A           51 FMQMLIRLTRA--KKVLELGTFTGYSALAMSLALPDDGQVI--TCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLH  126 (242)
T ss_dssp             HHHHHHHHHTC--SEEEEEESCCSHHHHHHHHTSCTTCEEE--EEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred             HHHHHHhhcCc--CEEEEeeCCcCHHHHHHHHhCCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence            44444444333  58999999999999999984   44554  4688887775443    3354   3445565543 33


Q ss_pred             CC-----CCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          322 FY-----DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       322 f~-----d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                      ..     +++||+|++...      ......++.++.|+|||||++++.+..+.
T Consensus       127 ~~~~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~~~  174 (242)
T 3r3h_A          127 SLLNEGGEHQFDFIFIDAD------KTNYLNYYELALKLVTPKGLIAIDNIFWD  174 (242)
T ss_dssp             HHHHHHCSSCEEEEEEESC------GGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred             HHhhccCCCCEeEEEEcCC------hHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence            22     589999998653      23345789999999999999999887543

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.98  E-value=7e-10  Score=109.20  Aligned_cols=119  Identities=13%  Similarity=0.016  Sum_probs=69.9

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCC----CHHhHHHHHHc--C--CCceeec-ccCCCCCCCCccceEEecCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNV----DAPYSEFIAAR--G--LFPLYLS-LDHRFPFYDNVFDLVHASSGL  336 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~----s~~~l~~a~eR--G--li~~~~~-~~e~LPf~d~sFDlV~s~~~L  336 (418)
                      .+|||+|||+|.++..+++++ .|+  ++|+    ++.+++.+..+  +  .+.+..+ +...+  ++++||+|+|...+
T Consensus        84 ~~VLDlGcG~G~~s~~la~~~-~V~--gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l--~~~~fD~V~sd~~~  158 (305)
T 2p41_A           84 GKVVDLGCGRGGWSYYCGGLK-NVR--EVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFI--PPERCDTLLCDIGE  158 (305)
T ss_dssp             EEEEEETCTTSHHHHHHHTST-TEE--EEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTS--CCCCCSEEEECCCC
T ss_pred             CEEEEEcCCCCHHHHHHHhcC-CEE--EEeccccCchhHHHHHHhhhcCCCCeEEEeccccccC--CcCCCCEEEECCcc
Confidence            489999999999999999984 232  2455    33332211111  1  1233445 55554  46799999997665


Q ss_pred             c---CCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          337 D---VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       337 ~---~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      +   +..+....-.+|.++.|+|||||.|++..+....++..+.+..+...  |..+.
T Consensus       159 ~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~~--f~~v~  214 (305)
T 2p41_A          159 SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRK--HGGAL  214 (305)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHH--HCCEE
T ss_pred             ccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHH--cCCEE
Confidence            4   11111111147899999999999998865544333333333333333  44443

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.98  E-value=1.1e-10  Score=108.82  Aligned_cols=96  Identities=15%  Similarity=0.204  Sum_probs=72.3

Q ss_pred             CCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CCC-ceeecccCCCCCCCCccceEEecCcCc
Q 037675          265 IRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GLF-PLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gli-~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      ..+|||+|||+|.+|..++..  ++.+  .++|+++.|+++++++    |+. .+...+... ..++++||+|.+..++|
T Consensus        50 ~~~VLDlGCG~GplAl~l~~~~p~a~~--~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~-~~~~~~~DvVLa~k~LH  126 (200)
T 3fzg_A           50 VSSILDFGCGFNPLALYQWNENEKIIY--HAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKES-DVYKGTYDVVFLLKMLP  126 (200)
T ss_dssp             CSEEEEETCTTHHHHHHHHCSSCCCEE--EEECSCHHHHHHHHHHHHHSCCSSEEEEECCHH-HHTTSEEEEEEEETCHH
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCCCEE--EEEeCCHHHHHHHHHHHHhcCCCccEEEecccc-cCCCCCcChhhHhhHHH
Confidence            459999999999999999877  5654  4689999999987663    553 233332222 25688999999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +..+.   +..+.++.+.|||||+| |+-+
T Consensus       127 lL~~~---~~al~~v~~~L~pggvf-ISfp  152 (200)
T 3fzg_A          127 VLKQQ---DVNILDFLQLFHTQNFV-ISFP  152 (200)
T ss_dssp             HHHHT---TCCHHHHHHTCEEEEEE-EEEE
T ss_pred             hhhhh---HHHHHHHHHHhCCCCEE-EEeC
Confidence            88333   36777999999999977 4443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.97  E-value=7.8e-10  Score=103.02  Aligned_cols=99  Identities=21%  Similarity=0.223  Sum_probs=72.4

Q ss_pred             HHHccCCCCCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCc-c
Q 037675          256 DVLALGSGGIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNV-F  327 (418)
Q Consensus       256 ~lL~l~~g~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~s-F  327 (418)
                      +.+.+.++  .+|||+|||+|.++..|++.+ ..++  ++|+++.+++.++++    |+  +.+..++. ..+++++. |
T Consensus        85 ~~l~~~~~--~~vLdiG~G~G~~~~~la~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~f  159 (235)
T 1jg1_A           85 EIANLKPG--MNILEVGTGSGWNAALISEIVKTDVY--TIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPY  159 (235)
T ss_dssp             HHHTCCTT--CCEEEECCTTSHHHHHHHHHHCSCEE--EEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCE
T ss_pred             HhcCCCCC--CEEEEEeCCcCHHHHHHHHHhCCEEE--EEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCc
Confidence            34455555  489999999999999999874 4443  479999999887764    43  23344444 44565554 9


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      |+|++..+++++.         .++.++|||||++++....
T Consensus       160 D~Ii~~~~~~~~~---------~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          160 DVIIVTAGAPKIP---------EPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             EEEEECSBBSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred             cEEEECCcHHHHH---------HHHHHhcCCCcEEEEEEec
Confidence            9999998887763         2788999999999887653

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.97  E-value=5.8e-09  Score=104.03  Aligned_cols=98  Identities=20%  Similarity=0.279  Sum_probs=70.0

Q ss_pred             CCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc------CC----CceeecccCCC-C-CCCCccceE
Q 037675          265 IRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR------GL----FPLYLSLDHRF-P-FYDNVFDLV  330 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR------Gl----i~~~~~~~e~L-P-f~d~sFDlV  330 (418)
                      .++|||||||+|.++..|+++.  ..+  +++|+++.+++.|+++      |+    +.++.+++..+ + +++++||+|
T Consensus       121 ~~~VLdIG~G~G~~a~~la~~~~~~~V--~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          121 PKKVLVIGGGDGGVLREVARHASIEQI--DMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEE--EEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCEEEEECCCccHHHHHHHHcCCCCEE--EEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            4699999999999999999873  344  3579999999988764      21    23445554432 2 346899999


Q ss_pred             EecCcCcCCCChhH--HHHHHHHhhccccCCcEEEEE
Q 037675          331 HASSGLDVGGQPEK--LEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       331 ~s~~~L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      ++... .++.....  ...++.++.|+|||||.+++.
T Consensus       199 i~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          199 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCC-CccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            99643 22221121  258999999999999999886

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.97  E-value=2.4e-09  Score=103.62  Aligned_cols=97  Identities=20%  Similarity=0.180  Sum_probs=67.9

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHcC-----C-----------CceeecccCC-CCCCCCcc
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAARG-----L-----------FPLYLSLDHR-FPFYDNVF  327 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eRG-----l-----------i~~~~~~~e~-LPf~d~sF  327 (418)
                      .+|||+|||+|.++..+++++. .+  .++|+++.+++.|+++-     +           +.++.+++.. ++. +++|
T Consensus        77 ~~VLdiG~G~G~~~~~l~~~~~~~v--~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f  153 (281)
T 1mjf_A           77 KRVLVIGGGDGGTVREVLQHDVDEV--IMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF  153 (281)
T ss_dssp             CEEEEEECTTSHHHHHHTTSCCSEE--EEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred             CeEEEEcCCcCHHHHHHHhCCCCEE--EEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence            5899999999999999998853 34  35799999999887652     1           1233344322 233 6789


Q ss_pred             ceEEecCcCcCCCChhHH--HHHHHHhhccccCCcEEEEEe
Q 037675          328 DLVHASSGLDVGGQPEKL--EFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~l--e~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      |+|++.... ++.....+  ..++.++.|+|||||.+++..
T Consensus       154 D~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          154 DVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             EEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            999986543 22222222  478999999999999998864

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.97  E-value=4.6e-09  Score=104.31  Aligned_cols=119  Identities=18%  Similarity=0.095  Sum_probs=85.6

Q ss_pred             CeEEEECCccChHHHHHhhcC---cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccceEEecCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERN---VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFDLVHASSGL  336 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g---V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFDlV~s~~~L  336 (418)
                      .+|||+|||+|+++..++..+   ..++  ++|+++.+++.|+++    |+  +.+..+++..++.+.+.||+|+++--+
T Consensus       205 ~~vLD~gcGsG~~~ie~a~~~~~~~~v~--g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPy  282 (354)
T 3tma_A          205 MRVLDPFTGSGTIALEAASTLGPTSPVY--AGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPPH  282 (354)
T ss_dssp             CCEEESSCTTSHHHHHHHHHHCTTSCEE--EEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCCS
T ss_pred             CEEEeCCCCcCHHHHHHHHhhCCCceEE--EEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCCC
Confidence            589999999999999888853   5554  479999999877653    53  456678888898888889999996443


Q ss_pred             cCCC-Chh----HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEE
Q 037675          337 DVGG-QPE----KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       337 ~~~~-~~~----~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      .... +..    ..+.++.++.|+|||||.+++....   ++   .+..+.+ .||+..+-.
T Consensus       283 g~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~---~~---~~~~~~~-~g~~~~~~~  337 (354)
T 3tma_A          283 GLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR---PA---LLKRALP-PGFALRHAR  337 (354)
T ss_dssp             CC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC---HH---HHHHHCC-TTEEEEEEE
T ss_pred             cCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC---HH---HHHHHhh-cCcEEEEEE
Confidence            3211 111    1257899999999999999887542   12   2444555 888876543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.96  E-value=7e-10  Score=115.74  Aligned_cols=95  Identities=12%  Similarity=0.151  Sum_probs=72.8

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++..+++.+. .++  ++|+++ |++.|++    .|+   +.++.++.+.++++ +.||+|++...++
T Consensus       160 ~~VLDiGcGtG~la~~la~~~~~~V~--gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~  235 (480)
T 3b3j_A          160 KIVLDVGCGSGILSFFAAQAGARKIY--AVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGY  235 (480)
T ss_dssp             CEEEEESCSTTHHHHHHHHTTCSEEE--EEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHH
T ss_pred             CEEEEecCcccHHHHHHHHcCCCEEE--EEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchH
Confidence            5899999999999999998864 554  579887 8776654    354   35566777777765 5899999987767


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      ++.... +...+.++.|+|||||++++.
T Consensus       236 ~~~~e~-~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          236 MLFNER-MLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             HHTCHH-HHHHHHHGGGGEEEEEEEESC
T ss_pred             hcCcHH-HHHHHHHHHHhcCCCCEEEEE
Confidence            665443 446777999999999999754

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.96  E-value=1.7e-09  Score=101.17  Aligned_cols=97  Identities=22%  Similarity=0.222  Sum_probs=71.5

Q ss_pred             CeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc----CC---Cceeeccc----CCCCCCC--Cccce
Q 037675          266 RIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLD----HRFPFYD--NVFDL  329 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~----e~LPf~d--~sFDl  329 (418)
                      ++|||+|||+|.++..|++.   +..++  ++|+++.+++.|+++    |+   +.+..+++    ..++..+  ++||+
T Consensus        74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~--~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~  151 (232)
T 3cbg_A           74 KQVLEIGVFRGYSALAMALQLPPDGQII--ACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL  151 (232)
T ss_dssp             CEEEEECCTTSHHHHHHHTTSCTTCEEE--EEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred             CEEEEecCCCCHHHHHHHHhCCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence            48999999999999999976   34553  479999999887653    44   23444443    2344444  88999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                      |++...      ......++.++.++|||||++++.+..+.
T Consensus       152 V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  186 (232)
T 3cbg_A          152 IFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNVLWH  186 (232)
T ss_dssp             EEECSC------GGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred             EEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence            998653      23345899999999999999999876543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.96  E-value=3.7e-09  Score=103.83  Aligned_cols=99  Identities=18%  Similarity=0.209  Sum_probs=69.0

Q ss_pred             CCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc------CC----CceeecccCC-CCCCCCccceEE
Q 037675          265 IRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR------GL----FPLYLSLDHR-FPFYDNVFDLVH  331 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR------Gl----i~~~~~~~e~-LPf~d~sFDlV~  331 (418)
                      .++|||+|||+|.++..++++.  ..+  .++|+++.+++.|+++      ++    +.++.+++.. ++..+++||+|+
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v--~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           96 PRKVLIIGGGDGGVLREVVKHPSVESV--VQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEE--EEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHcCCCCEE--EEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            4699999999999999999873  344  3579999999988764      11    2344455433 445678999999


Q ss_pred             ecCcCcCCCChh--HHHHHHHHhhccccCCcEEEEEe
Q 037675          332 ASSGLDVGGQPE--KLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       332 s~~~L~~~~~~~--~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +....+ +....  ..+.++.++.|+|||||.+++..
T Consensus       174 ~d~~~~-~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          174 TDSSDP-MGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCC-CCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            964432 21111  11368999999999999998875

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.96  E-value=3e-09  Score=102.82  Aligned_cols=124  Identities=15%  Similarity=0.189  Sum_probs=79.9

Q ss_pred             CCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc------CC----CceeecccCC-CCCCCCccceEEe
Q 037675          265 IRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR------GL----FPLYLSLDHR-FPFYDNVFDLVHA  332 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR------Gl----i~~~~~~~e~-LPf~d~sFDlV~s  332 (418)
                      .++|||+|||+|.++..++++ ++.-+ .++|+++.+++.|++.      ++    +.++.+++.. ++..+++||+|++
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v-~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVKKA-TLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEE-EEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCceE-EEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            469999999999999999987 54222 3579999999988764      22    2344555433 3445789999999


Q ss_pred             cCcCcCCCChhH--HHHHHHHhhccccCCcEEEEEecc-cCchhHHHHHHHHHHHcCcEEEE
Q 037675          333 SSGLDVGGQPEK--LEFLMFDFDRILRAGGLFWLDNFY-CANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       333 ~~~L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~~~~-~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      .... ++.....  ...++.++.|+|||||.+++.... +...+....+.+.+++. |..+.
T Consensus       155 d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~  214 (275)
T 1iy9_A          155 DSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPITK  214 (275)
T ss_dssp             SCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEE
T ss_pred             CCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-CCCeE
Confidence            6443 2221110  137899999999999999886432 11222223344445554 65544

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.96  E-value=3.9e-09  Score=95.46  Aligned_cols=108  Identities=13%  Similarity=0.060  Sum_probs=75.5

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHcC-CCceeecccCCCCCCCCccceEEecCcCcCCCChh
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAARG-LFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPE  343 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eRG-li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~  343 (418)
                      .+|||+|||+|.++..+++.+. .++  ++|+++.+++.++++- -+.++.++...+|   ++||+|+++..++++....
T Consensus        53 ~~vlD~gcG~G~~~~~l~~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~  127 (200)
T 1ne2_A           53 RSVIDAGTGNGILACGSYLLGAESVT--AFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVKHS  127 (200)
T ss_dssp             SEEEEETCTTCHHHHHHHHTTBSEEE--EEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-------
T ss_pred             CEEEEEeCCccHHHHHHHHcCCCEEE--EEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccCch
Confidence            5899999999999999998865 343  5899999999998873 2366677777765   7899999999888875422


Q ss_pred             HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcC
Q 037675          344 KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFG  386 (418)
Q Consensus       344 ~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~G  386 (418)
                       ...++.++.|+|  |+.+++..+     ...+.+..+++..|
T Consensus       128 -~~~~l~~~~~~~--g~~~~~~~~-----~~~~~~~~~~~~~g  162 (200)
T 1ne2_A          128 -DRAFIDKAFETS--MWIYSIGNA-----KARDFLRREFSARG  162 (200)
T ss_dssp             -CHHHHHHHHHHE--EEEEEEEEG-----GGHHHHHHHHHHHE
T ss_pred             -hHHHHHHHHHhc--CcEEEEEcC-----chHHHHHHHHHHCC
Confidence             236899999999  554433322     11234566677777

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.95  E-value=4.8e-09  Score=102.44  Aligned_cols=122  Identities=17%  Similarity=0.128  Sum_probs=76.4

Q ss_pred             CeEEEECCccChHHHHHhhc-C-cEEEEeccCCCHHhHHHHHHcC------C----CceeecccCC-CCCCCCccceEEe
Q 037675          266 RIGFDIGGGSGTFAARMAER-N-VTVITNTLNVDAPYSEFIAARG------L----FPLYLSLDHR-FPFYDNVFDLVHA  332 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-g-V~vv~~alD~s~~~l~~a~eRG------l----i~~~~~~~e~-LPf~d~sFDlV~s  332 (418)
                      .+|||+|||+|.++..++++ + ..+  .++|+++.+++.++++-      +    +.++.+++.. ++..+++||+|++
T Consensus        92 ~~VLdiG~G~G~~~~~l~~~~~~~~v--~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           92 KKVLIIGGGDGGTLREVLKHDSVEKA--ILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             CEEEEEECTTCHHHHHHTTSTTCSEE--EEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CEEEEEcCCcCHHHHHHHhcCCCCEE--EEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            69999999999999999987 4 344  35799999999887641      1    2344454433 4445788999998


Q ss_pred             cCcCcCCCChhH--HHHHHHHhhccccCCcEEEEEecc--cCchhHHHHHHHHHHHcCcEEEE
Q 037675          333 SSGLDVGGQPEK--LEFLMFDFDRILRAGGLFWLDNFY--CANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       333 ~~~L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~~~~--~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      ...-++......  ...++.++.|+|||||.+++....  ...+.....+..+.+.  |..+.
T Consensus       170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~--F~~v~  230 (296)
T 1inl_A          170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV--FPITR  230 (296)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH--CSEEE
T ss_pred             cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH--CCceE
Confidence            532221111111  147899999999999999886432  2223333434444444  55444

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.95  E-value=3.5e-09  Score=104.72  Aligned_cols=99  Identities=18%  Similarity=0.224  Sum_probs=67.1

Q ss_pred             CCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHcC------C----CceeecccCC-CCCCCCccceEE
Q 037675          265 IRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAARG------L----FPLYLSLDHR-FPFYDNVFDLVH  331 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eRG------l----i~~~~~~~e~-LPf~d~sFDlV~  331 (418)
                      .++|||+|||+|.++..++++.  ..+  .++|+++.+++.|+++-      +    +.++.+++.. ++..+++||+|+
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v--~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHESVEKV--TMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEE--EEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCCCCEE--EEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            3699999999999999999873  334  35799999999988752      1    2233444433 344578999999


Q ss_pred             ecCcCcCCCChhHH--HHHHHHhhccccCCcEEEEEe
Q 037675          332 ASSGLDVGGQPEKL--EFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       332 s~~~L~~~~~~~~l--e~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +... +++.+...+  ..++.++.|+|||||.+++..
T Consensus       187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             ECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            8653 333222222  588999999999999998865

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.94  E-value=6.1e-09  Score=108.69  Aligned_cols=129  Identities=16%  Similarity=0.159  Sum_probs=87.7

Q ss_pred             HHHHHccC--CCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCC
Q 037675          254 IDDVLALG--SGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPF  322 (418)
Q Consensus       254 I~~lL~l~--~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf  322 (418)
                      +..++...  +|  .+|||+|||+|+.+..|++. +  -.++  ++|+++.+++.++++    |+  +.+..++...++.
T Consensus       107 ~~~~L~~~~~~g--~~VLDl~aGpG~kt~~lA~~~~~~g~V~--avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~  182 (479)
T 2frx_A          107 PVAALFADGNAP--QRVMDVAAAPGSKTTQISARMNNEGAIL--ANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA  182 (479)
T ss_dssp             HHHHHTTTTCCC--SEEEESSCTTSHHHHHHHHHTTTCSEEE--EECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH
T ss_pred             HHHHhCcccCCC--CEEEEeCCCCCHHHHHHHHhCCCCCEEE--EEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh
Confidence            34455555  55  48999999999999999985 2  3443  579999999876653    55  2344567777664


Q ss_pred             -CCCccceEEec------CcCcC-------CCCh------hHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHH
Q 037675          323 -YDNVFDLVHAS------SGLDV-------GGQP------EKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLI  382 (418)
Q Consensus       323 -~d~sFDlV~s~------~~L~~-------~~~~------~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~  382 (418)
                       .+++||.|++.      +++..       |...      .....+|.++.|+|||||+++++......++.++.+..++
T Consensus       183 ~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l  262 (479)
T 2frx_A          183 AVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLK  262 (479)
T ss_dssp             HSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHH
T ss_pred             hccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHH
Confidence             57899999972      22221       2111      0123689999999999999998876554555555667777


Q ss_pred             HHcC
Q 037675          383 ERFG  386 (418)
Q Consensus       383 ~~~G  386 (418)
                      ++.+
T Consensus       263 ~~~~  266 (479)
T 2frx_A          263 ETYP  266 (479)
T ss_dssp             HHST
T ss_pred             HHCC
Confidence            7664

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.94  E-value=1.8e-09  Score=99.32  Aligned_cols=95  Identities=20%  Similarity=0.160  Sum_probs=71.7

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcC-------cEEEEeccCCCHHhHHHHHHc----C-------CCceeecccCCCC
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERN-------VTVITNTLNVDAPYSEFIAAR----G-------LFPLYLSLDHRFP  321 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~g-------V~vv~~alD~s~~~l~~a~eR----G-------li~~~~~~~e~LP  321 (418)
                      +.++  .+|||+|||+|.++..|++..       ..++  ++|+++.+++.++++    +       -+.+..++....+
T Consensus        78 ~~~~--~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  153 (227)
T 2pbf_A           78 LKPG--SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVI--GLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVN  153 (227)
T ss_dssp             SCTT--CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEE--EEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCC
T ss_pred             CCCC--CEEEEECCCCCHHHHHHHHHhcccCCCCCEEE--EEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcc
Confidence            4444  489999999999999998863       2554  579999999887664    3       1344555665554


Q ss_pred             ----CCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          322 ----FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       322 ----f~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                          +.+++||+|++...+++.         +.++.++|||||++++...
T Consensus       154 ~~~~~~~~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          154 EEEKKELGLFDAIHVGASASEL---------PEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHHHHCCEEEEEECSBBSSC---------CHHHHHHEEEEEEEEEEEE
T ss_pred             cccCccCCCcCEEEECCchHHH---------HHHHHHhcCCCcEEEEEEc
Confidence                567889999999888754         3588999999999988754

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.94  E-value=5.6e-09  Score=100.45  Aligned_cols=116  Identities=16%  Similarity=0.176  Sum_probs=80.9

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCCCCCCccceEE
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFPFYDNVFDLVH  331 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LPf~d~sFDlV~  331 (418)
                      +.++  .+|||+|||+|.++..+++++  ..++  ++|+++.+++.|++    .|+  +.++.+++..++. +++||+|+
T Consensus       117 ~~~~--~~VLDlgcG~G~~s~~la~~~~~~~V~--~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi  191 (272)
T 3a27_A          117 SNEN--EVVVDMFAGIGYFTIPLAKYSKPKLVY--AIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVI  191 (272)
T ss_dssp             CCTT--CEEEETTCTTTTTHHHHHHHTCCSEEE--EEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEE
T ss_pred             cCCC--CEEEEecCcCCHHHHHHHHhCCCCEEE--EEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEE
Confidence            4444  589999999999999999873  3553  57999999987655    344  2345567766654 67899999


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc---hhHHHHHHHHHHHcCc
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN---DEKKSALTRLIERFGY  387 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~---ee~~~~~~~l~~~~Gf  387 (418)
                      +....       +...++.++.++|||||+++++......   +...+.+..+.+..|+
T Consensus       192 ~d~p~-------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~  243 (272)
T 3a27_A          192 MGYVH-------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGY  243 (272)
T ss_dssp             ECCCS-------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTE
T ss_pred             ECCcc-------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCC
Confidence            86543       2237888999999999999988775432   2223334444455554

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.93  E-value=5.9e-10  Score=104.11  Aligned_cols=107  Identities=18%  Similarity=0.232  Sum_probs=75.3

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCC-CC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHR-FP  321 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~-LP  321 (418)
                      .+..++.+.++  .+|||+|||+|.++..|++.   +..++  ++|+++.+++.++++    |+   +.+..++... ++
T Consensus        51 ~l~~l~~~~~~--~~VLdiG~G~G~~~~~la~~~~~~~~v~--~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~  126 (239)
T 2hnk_A           51 FLNILTKISGA--KRIIEIGTFTGYSSLCFASALPEDGKIL--CCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQ  126 (239)
T ss_dssp             HHHHHHHHHTC--SEEEEECCTTCHHHHHHHHHSCTTCEEE--EEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHhhCc--CEEEEEeCCCCHHHHHHHHhCCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHH
Confidence            44444444444  48999999999999999986   44554  479999999887664    44   2333443322 12


Q ss_pred             --------------CCC--CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675          322 --------------FYD--NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC  369 (418)
Q Consensus       322 --------------f~d--~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~  369 (418)
                                    |++  ++||+|++....      .....++.++.++|||||++++.+..+
T Consensus       127 ~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~~  184 (239)
T 2hnk_A          127 VLIDSKSAPSWASDFAFGPSSIDLFFLDADK------ENYPNYYPLILKLLKPGGLLIADNVLW  184 (239)
T ss_dssp             HHHHCSSCCGGGTTTCCSTTCEEEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             HHHhhcccccccccccCCCCCcCEEEEeCCH------HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence                          333  789999987543      234588999999999999999987544

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.93  E-value=2.6e-09  Score=106.27  Aligned_cols=123  Identities=11%  Similarity=0.069  Sum_probs=84.3

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC----CceeecccCCCCC----CCCccceEEec
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL----FPLYLSLDHRFPF----YDNVFDLVHAS  333 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl----i~~~~~~~e~LPf----~d~sFDlV~s~  333 (418)
                      .+|||+|||+|.++..+++.+..++  ++|+++.+++.++++    |+    +.++.+++..+..    .+++||+|++.
T Consensus       155 ~~VLDlgcGtG~~sl~la~~ga~V~--~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d  232 (332)
T 2igt_A          155 LKVLNLFGYTGVASLVAAAAGAEVT--HVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD  232 (332)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCEEE--EECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred             CcEEEcccccCHHHHHHHHcCCEEE--EEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence            4899999999999999999887553  589999999877653    44    2344555544321    15789999984


Q ss_pred             Cc-CcC------CCChhHHHHHHHHhhccccCCcEEEEEecccCc---hhHHHHHHHHHHHcCcEEE
Q 037675          334 SG-LDV------GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN---DEKKSALTRLIERFGYKKL  390 (418)
Q Consensus       334 ~~-L~~------~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~---ee~~~~~~~l~~~~Gfk~l  390 (418)
                      -- +..      +........++.++.++|||||++++.......   +...+.+...++.+|++..
T Consensus       233 PP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~  299 (332)
T 2igt_A          233 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA  299 (332)
T ss_dssp             CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            21 110      111234568999999999999998776654332   3344555556667888654

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.93  E-value=4.6e-09  Score=103.94  Aligned_cols=99  Identities=15%  Similarity=0.221  Sum_probs=70.5

Q ss_pred             CCeEEEECCccChHHHHHhhc-C-cEEEEeccCCCHHhHHHHHHcCC----------CceeecccCC-CCCCCCccceEE
Q 037675          265 IRIGFDIGGGSGTFAARMAER-N-VTVITNTLNVDAPYSEFIAARGL----------FPLYLSLDHR-FPFYDNVFDLVH  331 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~-g-V~vv~~alD~s~~~l~~a~eRGl----------i~~~~~~~e~-LPf~d~sFDlV~  331 (418)
                      ..+|||+|||+|.++..++++ + ..+  .++|+++.+++.++++-.          +.++.++... ++..+++||+|+
T Consensus       117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v--~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          117 PKNVLVVGGGDGGIIRELCKYKSVENI--DICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             CCEEEEEECTTCHHHHHHTTCTTCCEE--EEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHcCCCCEE--EEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            369999999999999999987 3 344  358999999999887521          2234444333 333468899999


Q ss_pred             ecCcCcCCCChhHH--HHHHHHhhccccCCcEEEEEe
Q 037675          332 ASSGLDVGGQPEKL--EFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       332 s~~~L~~~~~~~~l--e~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +... .++.....+  +.++.++.|+|||||++++..
T Consensus       195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            8643 233222222  588999999999999998864

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.93  E-value=7.8e-10  Score=105.00  Aligned_cols=107  Identities=12%  Similarity=0.159  Sum_probs=75.5

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCC-CC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHR-FP  321 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~-LP  321 (418)
                      ++..++.+..+  ++|||+|||+|..+..|++.   +..++  ++|+++.+++.|+++    |+   +.++.+++.. +|
T Consensus        70 ll~~l~~~~~~--~~VLeiG~G~G~~~~~la~~~~~~~~v~--~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~  145 (247)
T 1sui_A           70 FLSMLLKLINA--KNTMEIGVYTGYSLLATALAIPEDGKIL--AMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLD  145 (247)
T ss_dssp             HHHHHHHHTTC--CEEEEECCGGGHHHHHHHHHSCTTCEEE--EEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHhhCc--CEEEEeCCCcCHHHHHHHHhCCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHH
Confidence            44444444433  58999999999999999876   45554  479999998877653    54   2345555433 34


Q ss_pred             C------CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675          322 F------YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC  369 (418)
Q Consensus       322 f------~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~  369 (418)
                      .      ++++||+|++....      .....++.++.|+|||||++++++..+
T Consensus       146 ~l~~~~~~~~~fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~d~~~~  193 (247)
T 1sui_A          146 EMIKDEKNHGSYDFIFVDADK------DNYLNYHKRLIDLVKVGGVIGYDNTLW  193 (247)
T ss_dssp             HHHHSGGGTTCBSEEEECSCS------TTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred             HHHhccCCCCCEEEEEEcCch------HHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence            2      26899999986432      223488999999999999999887544

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.91  E-value=2.8e-09  Score=98.59  Aligned_cols=90  Identities=13%  Similarity=0.155  Sum_probs=68.0

Q ss_pred             CeEEEECCccChHHHHHhhc-Cc-------EEEEeccCCCHHhHHHHHHc----C-------CCceeecccCCCCCCC-C
Q 037675          266 RIGFDIGGGSGTFAARMAER-NV-------TVITNTLNVDAPYSEFIAAR----G-------LFPLYLSLDHRFPFYD-N  325 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-gV-------~vv~~alD~s~~~l~~a~eR----G-------li~~~~~~~e~LPf~d-~  325 (418)
                      .+|||+|||+|.++..|++. +.       .++  ++|+++.+++.++++    +       -+.+..++... ++++ +
T Consensus        86 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~  162 (227)
T 1r18_A           86 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIV--GIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNA  162 (227)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEE--EEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGC
T ss_pred             CEEEEECCCccHHHHHHHHhcccccCCccCEEE--EEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCC
Confidence            48999999999999999874 32       443  579999999877653    1       23445555544 4555 7


Q ss_pred             ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +||+|++...+++..         .++.++|||||++++...
T Consensus       163 ~fD~I~~~~~~~~~~---------~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          163 PYNAIHVGAAAPDTP---------TELINQLASGGRLIVPVG  195 (227)
T ss_dssp             SEEEEEECSCBSSCC---------HHHHHTEEEEEEEEEEES
T ss_pred             CccEEEECCchHHHH---------HHHHHHhcCCCEEEEEEe
Confidence            899999998887653         488999999999988754

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.91  E-value=9.6e-09  Score=102.06  Aligned_cols=121  Identities=17%  Similarity=0.177  Sum_probs=80.7

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcC-C-----CceeecccCCC--CCCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARG-L-----FPLYLSLDHRF--PFYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRG-l-----i~~~~~~~e~L--Pf~d~sFDlV~s~~~  335 (418)
                      .+|||||||+|.++.+++++  ++.++  ++|+++.+++.++++- .     +.++++++..+  .+++++||+|++...
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~--~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~  168 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNT--VVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVF  168 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEE--EEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEE--EEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCC
Confidence            48999999999999999983  56543  5899999999998852 1     23445554433  345789999998643


Q ss_pred             CcCCCChhHH--HHHHHHhhccccCCcEEEEEecccCc-hhHHHHHHHHHHHcCcEEEE
Q 037675          336 LDVGGQPEKL--EFLMFDFDRILRAGGLFWLDNFYCAN-DEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       336 L~~~~~~~~l--e~~L~Ei~RVLRPGG~~ii~~~~~~~-ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      .+. ..+..+  +.++.++.|+|||||+|++....... +..+..+..+.+.  |..+.
T Consensus       169 ~~~-~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~v--F~~v~  224 (317)
T 3gjy_A          169 AGA-ITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEV--FEHVA  224 (317)
T ss_dssp             TTS-CCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHH--CSEEE
T ss_pred             Ccc-ccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHH--CCceE
Confidence            332 222211  47999999999999999776542222 2233444444444  54443

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.90  E-value=1.2e-08  Score=102.59  Aligned_cols=134  Identities=13%  Similarity=0.125  Sum_probs=91.3

Q ss_pred             CeEEEECCccChHHHHHhhcCc--EEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNV--TVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSGL  336 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV--~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~L  336 (418)
                      .+|||+|||+|.++..++..+.  .++  ++|+++.|++.|+++    |+   +.+..+++..+|+++++||+|+++--+
T Consensus       219 ~~vLD~gCGsG~~~i~~a~~~~~~~v~--g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPy  296 (373)
T 3tm4_A          219 GSVLDPMCGSGTILIELALRRYSGEII--GIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPY  296 (373)
T ss_dssp             CCEEETTCTTCHHHHHHHHTTCCSCEE--EEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCC
T ss_pred             CEEEEccCcCcHHHHHHHHhCCCCeEE--EEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCC
Confidence            5899999999999999998865  554  589999999877653    54   456678889999989999999997543


Q ss_pred             cCC----CChhH-HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEEEE
Q 037675          337 DVG----GQPEK-LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVL  411 (418)
Q Consensus       337 ~~~----~~~~~-le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~  411 (418)
                      ...    ..... ...++.++.|+| +|+.+++..   ..    +.+...++..||+..+-......      .+-.-++
T Consensus       297 g~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~---~~----~~~~~~~~~~G~~~~~~~~~~nG------~l~~~~~  362 (373)
T 3tm4_A          297 GLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITT---EK----KAIEEAIAENGFEIIHHRVIGHG------GLMVHLY  362 (373)
T ss_dssp             C------CCHHHHHHHHHHHHHHHE-EEEEEEEES---CH----HHHHHHHHHTTEEEEEEEEEEET------TEEEEEE
T ss_pred             CcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEEC---CH----HHHHHHHHHcCCEEEEEEEEEcC------CEEEEEE
Confidence            321    11122 257889999999 444444432   11    23566788899987764333221      1235567


Q ss_pred             EcCC
Q 037675          412 QKPV  415 (418)
Q Consensus       412 qKP~  415 (418)
                      |+|.
T Consensus       363 ~~~~  366 (373)
T 3tm4_A          363 VVKL  366 (373)
T ss_dssp             EEEE
T ss_pred             eccC
Confidence            7764

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.90  E-value=2.9e-08  Score=89.80  Aligned_cols=114  Identities=13%  Similarity=0.179  Sum_probs=80.8

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccceEEecCcCcCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      .+|||+|||+|.++..+++.+. .+  +++|+++.+++.++++    |+ +.++.++...+|   ++||+|++.-.++.+
T Consensus        51 ~~vlD~g~G~G~~~~~l~~~~~~~v--~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~  125 (207)
T 1wy7_A           51 KVVADLGAGTGVLSYGALLLGAKEV--ICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGSQ  125 (207)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCSEE--EEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSSS
T ss_pred             CEEEEeeCCCCHHHHHHHHcCCCEE--EEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCccc
Confidence            5899999999999999998864 34  3589999999988775    32 345556777664   489999998777765


Q ss_pred             CChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675          340 GQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL  390 (418)
Q Consensus       340 ~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l  390 (418)
                      ... ....++.++.++|  ||.+ +...  ..++..+.+...++..||+..
T Consensus       126 ~~~-~~~~~l~~~~~~l--~~~~-~~~~--~~~~~~~~~~~~l~~~g~~~~  170 (207)
T 1wy7_A          126 RKH-ADRPFLLKAFEIS--DVVY-SIHL--AKPEVRRFIEKFSWEHGFVVT  170 (207)
T ss_dssp             STT-TTHHHHHHHHHHC--SEEE-EEEE--CCHHHHHHHHHHHHHTTEEEE
T ss_pred             cCC-chHHHHHHHHHhc--CcEE-EEEe--CCcCCHHHHHHHHHHCCCeEE
Confidence            432 2347889999999  6644 3321  122333456677888898653

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.90  E-value=1.1e-09  Score=100.77  Aligned_cols=107  Identities=21%  Similarity=0.209  Sum_probs=73.6

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCC-C
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRF-P  321 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~L-P  321 (418)
                      .+..++.+..+  .+|||+|||+|.++..|++.   +..++  ++|+++.+++.++++    |+   +.+..+++... +
T Consensus        60 ~l~~l~~~~~~--~~vLdiG~G~G~~~~~la~~~~~~~~v~--~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~  135 (229)
T 2avd_A           60 LLANLARLIQA--KKALDLGTFTGYSALALALALPADGRVV--TCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLD  135 (229)
T ss_dssp             HHHHHHHHTTC--CEEEEECCTTSHHHHHHHTTSCTTCEEE--EEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred             HHHHHHHhcCC--CEEEEEcCCccHHHHHHHHhCCCCCEEE--EEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHH
Confidence            34444444444  48999999999999999985   34543  479999988877654    44   23444443221 1


Q ss_pred             -CCC----CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675          322 -FYD----NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC  369 (418)
Q Consensus       322 -f~d----~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~  369 (418)
                       +.+    ++||+|++....      .....++.++.++|||||++++.+..+
T Consensus       136 ~~~~~~~~~~~D~v~~d~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~~  182 (229)
T 2avd_A          136 ELLAAGEAGTFDVAVVDADK------ENCSAYYERCLQLLRPGGILAVLRVLW  182 (229)
T ss_dssp             HHHHTTCTTCEEEEEECSCS------TTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             HHHhcCCCCCccEEEECCCH------HHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence             111    789999986431      223488999999999999999987644

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.89  E-value=7.2e-09  Score=100.44  Aligned_cols=100  Identities=14%  Similarity=0.176  Sum_probs=71.3

Q ss_pred             CCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHcCC----------CceeecccCC-CCCCCCccceEE
Q 037675          265 IRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAARGL----------FPLYLSLDHR-FPFYDNVFDLVH  331 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eRGl----------i~~~~~~~e~-LPf~d~sFDlV~  331 (418)
                      .++|||+|||+|.++..+++..  ..+  .++|+++.+++.++++--          +.++.+++.. ++..+++||+|+
T Consensus        79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v--~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           79 PKNVLVVGGGDGGIIRELCKYKSVENI--DICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEE--EEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCeEEEEeCCcCHHHHHHHHcCCCCEE--EEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            4699999999999999999873  333  357999999999887521          1234444433 233478999999


Q ss_pred             ecCcCcCCCChhHH--HHHHHHhhccccCCcEEEEEec
Q 037675          332 ASSGLDVGGQPEKL--EFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       332 s~~~L~~~~~~~~l--e~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +.... ++.....+  ..++.++.|+|||||.+++...
T Consensus       157 ~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          157 VDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             EECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EcCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            96433 33322233  5899999999999999988753

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.87  E-value=2.4e-09  Score=108.71  Aligned_cols=96  Identities=15%  Similarity=0.132  Sum_probs=67.9

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHH----HHcCC---CceeecccCCCCCCCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFI----AARGL---FPLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a----~eRGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      .+|||||||+|.++...++.|..-| +++|.++ |++.|    ++.|+   +.++.++.+.+.++ +.||+|++...-..
T Consensus        85 k~VLDvG~GtGiLs~~Aa~aGA~~V-~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~  161 (376)
T 4hc4_A           85 KTVLDVGAGTGILSIFCAQAGARRV-YAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYG  161 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCSEE-EEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTT
T ss_pred             CEEEEeCCCccHHHHHHHHhCCCEE-EEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccccc
Confidence            4899999999999988888884322 3567774 55444    44565   45566888888776 67999999432222


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEE
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWL  364 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii  364 (418)
                      ......++.++...+|.|||||.++-
T Consensus       162 l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          162 LLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccchhhhHHHHHHhhCCCCceECC
Confidence            22223466899999999999998754

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.87  E-value=3.3e-08  Score=94.06  Aligned_cols=124  Identities=9%  Similarity=-0.042  Sum_probs=88.0

Q ss_pred             CCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCccceEEec
Q 037675          261 GSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNVFDLVHAS  333 (418)
Q Consensus       261 ~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~sFDlV~s~  333 (418)
                      ++|  .+|||||||+|.++..|++.+...-.+++|+++.+++.|++    .|+   +.+..++......+++.||+|+..
T Consensus        20 ~~g--~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivia   97 (230)
T 3lec_A           20 PKG--ARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITIC   97 (230)
T ss_dssp             CTT--EEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred             CCC--CEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEe
Confidence            444  48999999999999999998733222568999999887765    354   344556554444444579998865


Q ss_pred             CcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcc
Q 037675          334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGE  396 (418)
Q Consensus       334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~  396 (418)
                      +..-     .-+..+|.+..+.|+++|+|+++.. ..    .+.+...+...||..++-.+..
T Consensus        98 GmGg-----~lI~~IL~~~~~~l~~~~~lIlqp~-~~----~~~lr~~L~~~Gf~i~~E~lv~  150 (230)
T 3lec_A           98 GMGG-----RLIADILNNDIDKLQHVKTLVLQPN-NR----EDDLRKWLAANDFEIVAEDILT  150 (230)
T ss_dssp             EECH-----HHHHHHHHHTGGGGTTCCEEEEEES-SC----HHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CCch-----HHHHHHHHHHHHHhCcCCEEEEECC-CC----hHHHHHHHHHCCCEEEEEEEEE
Confidence            4332     2355889999999999999988753 22    2347777889999988755543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.87  E-value=8.2e-09  Score=101.56  Aligned_cols=100  Identities=16%  Similarity=0.190  Sum_probs=71.5

Q ss_pred             CCeEEEECCccChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHc------C-----CCceeecccCC-CCCCCCccceE
Q 037675          265 IRIGFDIGGGSGTFAARMAER-NV-TVITNTLNVDAPYSEFIAAR------G-----LFPLYLSLDHR-FPFYDNVFDLV  330 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~-gV-~vv~~alD~s~~~l~~a~eR------G-----li~~~~~~~e~-LPf~d~sFDlV  330 (418)
                      .++|||||||+|.++..++++ +. .+  .++|+++.+++.++++      |     -+.++.+++.. ++..+++||+|
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v--~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTVEKA--VMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEE--EEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCCCEE--EEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            369999999999999999987 33 34  3479999999988763      1     12344455444 44457899999


Q ss_pred             EecCcCcCC--CChhH--HHHHHHHhhccccCCcEEEEEe
Q 037675          331 HASSGLDVG--GQPEK--LEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       331 ~s~~~L~~~--~~~~~--le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      ++....+..  .+...  .+.++.++.|+|||||.+++..
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            997654330  21111  2488999999999999998764

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.85  E-value=8.5e-10  Score=116.95  Aligned_cols=99  Identities=12%  Similarity=0.043  Sum_probs=77.8

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCC--CCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRF--PFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~L--Pf~d~sFDlV~s~~~L~  337 (418)
                      -+|||||||.|.++..|+++|..|+  ++|.++.+++.|+.    +|.  +....++++++  ++.+++||+|+|+.+|+
T Consensus        68 ~~vLDvGCG~G~~~~~la~~ga~V~--giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~e  145 (569)
T 4azs_A           68 LNVLDLGCAQGFFSLSLASKGATIV--GIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFH  145 (569)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEE--EEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHH
T ss_pred             CeEEEECCCCcHHHHHHHhCCCEEE--EECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchh
Confidence            4899999999999999999999886  58999999987764    453  23445677777  57789999999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      |..++..+ ..+..+.+.|+++|..++...
T Consensus       146 hv~~~~~~-~~~~~~~~tl~~~~~~~~~~~  174 (569)
T 4azs_A          146 HIVHLHGI-DEVKRLLSRLADVTQAVILEL  174 (569)
T ss_dssp             HHHHHHCH-HHHHHHHHHHHHHSSEEEEEC
T ss_pred             cCCCHHHH-HHHHHHHHHhccccceeeEEe
Confidence            98765543 234567788899887766554

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.85  E-value=3.6e-08  Score=94.60  Aligned_cols=124  Identities=10%  Similarity=-0.056  Sum_probs=86.7

Q ss_pred             CCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEec
Q 037675          261 GSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHAS  333 (418)
Q Consensus       261 ~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~  333 (418)
                      ++|  .+|||||||+|.++..|++.+...-..++|+++.+++.|+++    |+   +.+..++......++..||+|+..
T Consensus        20 ~~g--~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivia   97 (244)
T 3gnl_A           20 TKN--ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIA   97 (244)
T ss_dssp             CSS--EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred             CCC--CEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEe
Confidence            444  489999999999999999987332224689999999877654    55   344555544433334469998875


Q ss_pred             CcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcc
Q 037675          334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGE  396 (418)
Q Consensus       334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~  396 (418)
                      +.--     .-+..+|.+..+.|+++|+|++..- ..    .+.+...+...||..++-.+..
T Consensus        98 gmGg-----~lI~~IL~~~~~~L~~~~~lIlq~~-~~----~~~lr~~L~~~Gf~i~~E~lv~  150 (244)
T 3gnl_A           98 GMGG-----TLIRTILEEGAAKLAGVTKLILQPN-IA----AWQLREWSEQNNWLITSEAILR  150 (244)
T ss_dssp             EECH-----HHHHHHHHHTGGGGTTCCEEEEEES-SC----HHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCch-----HHHHHHHHHHHHHhCCCCEEEEEcC-CC----hHHHHHHHHHCCCEEEEEEEEE
Confidence            4321     2355889999999999999988753 22    2346677888899987655443

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.83  E-value=2e-08  Score=98.59  Aligned_cols=134  Identities=13%  Similarity=0.072  Sum_probs=85.7

Q ss_pred             cCCCCCCeEEEECC------ccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHcCCCce-eecccCCCCCCCCccce
Q 037675          260 LGSGGIRIGFDIGG------GSGTFAARMAER---NVTVITNTLNVDAPYSEFIAARGLFPL-YLSLDHRFPFYDNVFDL  329 (418)
Q Consensus       260 l~~g~~r~VLDvGC------GtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eRGli~~-~~~~~e~LPf~d~sFDl  329 (418)
                      +.+|  .+|||+||      |+|+  ..++++   +..++  ++|+++. +     .+ +.+ +.+++..++++ ++||+
T Consensus        61 l~~g--~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~--gvDis~~-v-----~~-v~~~i~gD~~~~~~~-~~fD~  126 (290)
T 2xyq_A           61 VPYN--MRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLV--DSDLNDF-V-----SD-ADSTLIGDCATVHTA-NKWDL  126 (290)
T ss_dssp             CCTT--CEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEE--EEESSCC-B-----CS-SSEEEESCGGGCCCS-SCEEE
T ss_pred             CCCC--CEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEE--EEECCCC-C-----CC-CEEEEECccccCCcc-CcccE
Confidence            4444  48999999      4576  333433   34554  4688766 2     23 367 77888887764 78999


Q ss_pred             EEecCcCc--------CCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCC
Q 037675          330 VHASSGLD--------VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETG  401 (418)
Q Consensus       330 V~s~~~L~--------~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~  401 (418)
                      |++....+        +.......+.++.++.|+|||||.|++..+.....   +.+..+++..||..+... ..+.  .
T Consensus       127 Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~---~~l~~~l~~~GF~~v~~~-asr~--~  200 (290)
T 2xyq_A          127 IISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN---ADLYKLMGHFSWWTAFVT-NVNA--S  200 (290)
T ss_dssp             EEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC---HHHHHHHTTEEEEEEEEE-GGGT--T
T ss_pred             EEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCH---HHHHHHHHHcCCcEEEEE-EcCC--C
Confidence            99964322        11112334589999999999999999876543222   246777888899887654 2222  2


Q ss_pred             ccceEEEEEEEc
Q 037675          402 KSEVYLSAVLQK  413 (418)
Q Consensus       402 ~~e~~l~Ai~qK  413 (418)
                      ..|.|+.+.-.|
T Consensus       201 s~e~~lv~~~~~  212 (290)
T 2xyq_A          201 SSEAFLIGANYL  212 (290)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             chheEEecCCcc
Confidence            357777655433

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.82  E-value=5.2e-09  Score=98.34  Aligned_cols=106  Identities=15%  Similarity=0.143  Sum_probs=74.3

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC---CceeecccCC-CC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHR-FP  321 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~-LP  321 (418)
                      .+..++....+  ++|||+|||+|..+..|++.   +..++  ++|+++.+++.|++    .|+   +.+..+++.. ++
T Consensus        61 ~l~~l~~~~~~--~~VLeiG~G~G~~~~~la~~~~~~~~v~--~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~  136 (237)
T 3c3y_A           61 LMSFVLKLVNA--KKTIEVGVFTGYSLLLTALSIPDDGKIT--AIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALD  136 (237)
T ss_dssp             HHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHSCTTCEEE--EEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHhhCC--CEEEEeCCCCCHHHHHHHHhCCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence            44444444433  58999999999999999875   44553  47999999987765    355   2344454432 23


Q ss_pred             C------CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          322 F------YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       322 f------~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      .      ++++||+|++...      ......++.++.++|||||++++++..
T Consensus       137 ~l~~~~~~~~~fD~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~~~  183 (237)
T 3c3y_A          137 NLLQGQESEGSYDFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDNTL  183 (237)
T ss_dssp             HHHHSTTCTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred             HHHhccCCCCCcCEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence            2      2678999998632      233458999999999999999887753

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.81  E-value=6.7e-08  Score=91.57  Aligned_cols=120  Identities=13%  Similarity=0.060  Sum_probs=83.5

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC---Cceeeccc-CCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLD-HRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~-e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||||||+|.++..+++.+...-.+++|+++.+++.|++    .|+   +.+..++. +.++.. ..||+|+..+.- 
T Consensus        17 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~-~~~D~IviaG~G-   94 (225)
T 3kr9_A           17 AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEET-DQVSVITIAGMG-   94 (225)
T ss_dssp             EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG-GCCCEEEEEEEC-
T ss_pred             CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccC-cCCCEEEEcCCC-
Confidence            48999999999999999998743222468999998887665    355   23444443 444421 269998875432 


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcc
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGE  396 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~  396 (418)
                          ..-+..++.+....|+|+|+|++..- ..    .+.+...+...||..+.-.+..
T Consensus        95 ----g~~i~~Il~~~~~~L~~~~~lVlq~~-~~----~~~vr~~L~~~Gf~i~~e~lv~  144 (225)
T 3kr9_A           95 ----GRLIARILEEGLGKLANVERLILQPN-NR----EDDLRIWLQDHGFQIVAESILE  144 (225)
T ss_dssp             ----HHHHHHHHHHTGGGCTTCCEEEEEES-SC----HHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ----hHHHHHHHHHHHHHhCCCCEEEEECC-CC----HHHHHHHHHHCCCEEEEEEEEE
Confidence                12356889999999999999988544 22    2236677888999988655433

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.77  E-value=1.1e-08  Score=98.49  Aligned_cols=89  Identities=12%  Similarity=0.095  Sum_probs=66.2

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----------CCceeecccCCCCCCCCccceEEecC
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----------LFPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----------li~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      .++|||+|||+|.++..+++++..+  .++|+++.+++.|+++-          -+.+..+++..+.   ++||+|++..
T Consensus        73 ~~~VL~iG~G~G~~~~~ll~~~~~v--~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~  147 (262)
T 2cmg_A           73 LKEVLIVDGFDLELAHQLFKYDTHI--DFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ  147 (262)
T ss_dssp             CCEEEEESSCCHHHHHHHTTSSCEE--EEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS
T ss_pred             CCEEEEEeCCcCHHHHHHHhCCCEE--EEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC
Confidence            4699999999999999988876222  35899999998876531          1234445555544   8899999862


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                           .++.   .++.++.|+|||||.+++..
T Consensus       148 -----~dp~---~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          148 -----EPDI---HRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             -----CCCH---HHHHHHHTTEEEEEEEEEEE
T ss_pred             -----CChH---HHHHHHHHhcCCCcEEEEEc
Confidence                 2333   48999999999999998853

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.77  E-value=2.6e-08  Score=98.77  Aligned_cols=113  Identities=14%  Similarity=0.096  Sum_probs=77.8

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      .+|||+|||+|.++.. ++.+..++  ++|+++.+++.+++    .|+   +.++.+++..+.   ++||+|++.--.  
T Consensus       197 ~~VLDlg~G~G~~~l~-a~~~~~V~--~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~--  268 (336)
T 2yx1_A          197 DVVVDMFAGVGPFSIA-CKNAKKIY--AIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK--  268 (336)
T ss_dssp             CEEEETTCTTSHHHHH-TTTSSEEE--EEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT--
T ss_pred             CEEEEccCccCHHHHh-ccCCCEEE--EEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH--
Confidence            4899999999999999 87555554  57999998887655    344   345556666665   889999984211  


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHc-CcEEEEEEEc
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERF-GYKKLKWVVG  395 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~-Gfk~l~W~~~  395 (418)
                           ....++.++.++|+|||++++.++....+.    ..+.+++. +++.+.+...
T Consensus       269 -----~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~----~~~~l~~~~~~~i~~~~~v  317 (336)
T 2yx1_A          269 -----FAHKFIDKALDIVEEGGVIHYYTIGKDFDK----AIKLFEKKCDCEVLEKRIV  317 (336)
T ss_dssp             -----TGGGGHHHHHHHEEEEEEEEEEEEESSSHH----HHHHHHHHSEEEEEEEEEE
T ss_pred             -----hHHHHHHHHHHHcCCCCEEEEEEeecCchH----HHHHHHHhcCCcEEEEEEE
Confidence                 112678899999999999988766544222    33344444 6765544443

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.75  E-value=1.6e-08  Score=98.11  Aligned_cols=98  Identities=22%  Similarity=0.281  Sum_probs=68.7

Q ss_pred             CeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCcc---ceEEec-
Q 037675          266 RIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVF---DLVHAS-  333 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sF---DlV~s~-  333 (418)
                      .+|||+|||+|.++..|++. +..++  ++|+++.+++.|+++    |+   +.++.++... +++ ++|   |+|+++ 
T Consensus       125 ~~vLDlG~GsG~~~~~la~~~~~~v~--~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~IvsnP  200 (284)
T 1nv8_A          125 KTVADIGTGSGAIGVSVAKFSDAIVF--ATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSNP  200 (284)
T ss_dssp             CEEEEESCTTSHHHHHHHHHSSCEEE--EEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEECC
T ss_pred             CEEEEEeCchhHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEcC
Confidence            48999999999999999987 55554  589999999887653    44   3445555444 222 579   999996 


Q ss_pred             -----------CcCcCCCChhHH------HHHHHHhh-ccccCCcEEEEEeccc
Q 037675          334 -----------SGLDVGGQPEKL------EFLMFDFD-RILRAGGLFWLDNFYC  369 (418)
Q Consensus       334 -----------~~L~~~~~~~~l------e~~L~Ei~-RVLRPGG~~ii~~~~~  369 (418)
                                 .+. +. +...+      ..++.++. +.|||||++++.....
T Consensus       201 Pyi~~~~~l~~~v~-~e-p~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~  252 (284)
T 1nv8_A          201 PYVKSSAHLPKDVL-FE-PPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED  252 (284)
T ss_dssp             CCBCGGGSCTTSCC-CS-CHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred             CCCCcccccChhhc-cC-cHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence                       111 11 11111      16789999 9999999998865543

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.72  E-value=1.7e-08  Score=97.96  Aligned_cols=91  Identities=14%  Similarity=0.273  Sum_probs=65.4

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEEecCcCcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      .+|||+|||+|.++..|++++..++  ++|+++.|++.++++    +.   +.++.+++..++++  +||+|+++..+++
T Consensus        30 ~~VLDiG~G~G~lt~~L~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~nlpy~~  105 (285)
T 1zq9_A           30 DVVLEVGPGTGNMTVKLLEKAKKVV--ACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANLPYQI  105 (285)
T ss_dssp             CEEEEECCTTSTTHHHHHHHSSEEE--EEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEECCGGG
T ss_pred             CEEEEEcCcccHHHHHHHhhCCEEE--EEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEecCccc
Confidence            5899999999999999999876664  579999999988764    22   34556788777765  7999999755543


Q ss_pred             CCChhHHHHHH--------------HHh--hccccCCcEE
Q 037675          339 GGQPEKLEFLM--------------FDF--DRILRAGGLF  362 (418)
Q Consensus       339 ~~~~~~le~~L--------------~Ei--~RVLRPGG~~  362 (418)
                      ..  .-+..++              .|+  .|+|||||.+
T Consensus       106 ~~--~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~  143 (285)
T 1zq9_A          106 SS--PFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL  143 (285)
T ss_dssp             HH--HHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred             ch--HHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence            21  1111222              344  3799999976

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.70  E-value=2e-08  Score=101.58  Aligned_cols=124  Identities=11%  Similarity=0.062  Sum_probs=84.1

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHH----cCCC----ceeecccCC-CCC---CCCccceEEe
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAA----RGLF----PLYLSLDHR-FPF---YDNVFDLVHA  332 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~e----RGli----~~~~~~~e~-LPf---~d~sFDlV~s  332 (418)
                      .+|||+|||+|.++..+++.+. .++  ++|+++.+++.|++    .|+.    .++.+++.. ++.   ..++||+|++
T Consensus       214 ~~VLDl~cGtG~~sl~la~~ga~~V~--~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~  291 (385)
T 2b78_A          214 KTVLNLFSYTAAFSVAAAMGGAMATT--SVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  291 (385)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTBSEEE--EEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CeEEEEeeccCHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence            4899999999999999999775 453  57999998887655    3542    344455443 222   2468999998


Q ss_pred             cCcC-----cC-CCChhHHHHHHHHhhccccCCcEEEEEecccC--chhHHHHHHHHHHHcCcEEEE
Q 037675          333 SSGL-----DV-GGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA--NDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       333 ~~~L-----~~-~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~--~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      .--.     .. ......+..++.++.++|||||+++++.....  .+...+.+...+...|.+.+.
T Consensus       292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~  358 (385)
T 2b78_A          292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLD  358 (385)
T ss_dssp             CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCcEEE
Confidence            4211     11 12223455678889999999999988765332  244556677778888888443

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.70  E-value=2.5e-08  Score=100.72  Aligned_cols=121  Identities=11%  Similarity=0.055  Sum_probs=81.6

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHc----CC-C---ceeecccCCCCC----CCCccceEEe
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAAR----GL-F---PLYLSLDHRFPF----YDNVFDLVHA  332 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eR----Gl-i---~~~~~~~e~LPf----~d~sFDlV~s  332 (418)
                      .+|||+|||+|.++..+++.|. .++  ++|+++.+++.|+++    |+ .   .++.+++..+..    .++.||+|++
T Consensus       222 ~~VLDl~cG~G~~sl~la~~g~~~V~--~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~  299 (396)
T 3c0k_A          222 KRVLNCFSYTGGFAVSALMGGCSQVV--SVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_dssp             CEEEEESCTTCSHHHHHHHTTCSEEE--EEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CeEEEeeccCCHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence            4899999999999999999864 443  589999999876553    44 2   334455444321    1568999998


Q ss_pred             cCcCc------CCCChhHHHHHHHHhhccccCCcEEEEEecccC--chhHHHHHHHHHHHcCcE
Q 037675          333 SSGLD------VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA--NDEKKSALTRLIERFGYK  388 (418)
Q Consensus       333 ~~~L~------~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~--~ee~~~~~~~l~~~~Gfk  388 (418)
                      .--..      ......+...++.++.++|||||+++++.....  .++..+.+...+...|++
T Consensus       300 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~  363 (396)
T 3c0k_A          300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRD  363 (396)
T ss_dssp             CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCe
Confidence            52110      111114566899999999999999988764322  234445566677777753

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.69  E-value=4.3e-08  Score=99.84  Aligned_cols=121  Identities=17%  Similarity=0.150  Sum_probs=80.4

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCC-ceeecccCCC-CCCCCccceEEecCc-CcC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLF-PLYLSLDHRF-PFYDNVFDLVHASSG-LDV  338 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli-~~~~~~~e~L-Pf~d~sFDlV~s~~~-L~~  338 (418)
                      .+|||+|||+|.++..++..|..+  +++|+++.+++.++++    |+. .+..+++..+ +..++.||+|++.-- +..
T Consensus       216 ~~VLDlg~GtG~~sl~~a~~ga~V--~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~  293 (393)
T 4dmg_A          216 ERVLDVYSYVGGFALRAARKGAYA--LAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK  293 (393)
T ss_dssp             CEEEEESCTTTHHHHHHHHTTCEE--EEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred             CeEEEcccchhHHHHHHHHcCCeE--EEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence            489999999999999999998774  4689999999876653    552 2334444332 222344999998522 211


Q ss_pred             CC-----ChhHHHHHHHHhhccccCCcEEEEEecccC--chhHHHHHHHHHHHcCcE
Q 037675          339 GG-----QPEKLEFLMFDFDRILRAGGLFWLDNFYCA--NDEKKSALTRLIERFGYK  388 (418)
Q Consensus       339 ~~-----~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~--~ee~~~~~~~l~~~~Gfk  388 (418)
                      ..     ...+...++.++.++|||||++++......  .++..+.+...+...|.+
T Consensus       294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~  350 (393)
T 4dmg_A          294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRR  350 (393)
T ss_dssp             SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCe
Confidence            00     012445788999999999999986654332  234445566667766654

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.64  E-value=3.6e-08  Score=99.46  Aligned_cols=120  Identities=15%  Similarity=0.052  Sum_probs=79.6

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCC----CCCccceEEec
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPF----YDNVFDLVHAS  333 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf----~d~sFDlV~s~  333 (418)
                      .+|||+|||+|.++..+++.|. .++  ++|+++.+++.+++    .|+   +.++.+++..+..    .+++||+|++.
T Consensus       219 ~~VLDl~~G~G~~~~~la~~g~~~v~--~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d  296 (396)
T 2as0_A          219 DRVLDVFTYTGGFAIHAAIAGADEVI--GIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD  296 (396)
T ss_dssp             CEEEETTCTTTHHHHHHHHTTCSEEE--EEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CeEEEecCCCCHHHHHHHHCCCCEEE--EEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence            5899999999999999999864 453  58999999887654    344   2344455544321    26789999985


Q ss_pred             CcCcCCC------ChhHHHHHHHHhhccccCCcEEEEEecccC--chhHHHHHHHHHHHcCc
Q 037675          334 SGLDVGG------QPEKLEFLMFDFDRILRAGGLFWLDNFYCA--NDEKKSALTRLIERFGY  387 (418)
Q Consensus       334 ~~L~~~~------~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~--~ee~~~~~~~l~~~~Gf  387 (418)
                      --.....      ...+...++.++.++|||||++++......  .++..+.+...+...|.
T Consensus       297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~  358 (396)
T 2as0_A          297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGK  358 (396)
T ss_dssp             CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            2111100      013456889999999999999887765332  23334455556666654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.63  E-value=5.1e-08  Score=98.16  Aligned_cols=120  Identities=14%  Similarity=0.068  Sum_probs=80.1

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCC----CCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPF----YDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf----~d~sFDlV~s~~~  335 (418)
                      .+|||+|||+|.++..+++.+..+  +++|+++.+++.|+++    |+  +.++.+++..+..    .+++||+|++.--
T Consensus       211 ~~VLDlg~G~G~~~~~la~~~~~v--~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP  288 (382)
T 1wxx_A          211 ERALDVFSYAGGFALHLALGFREV--VAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP  288 (382)
T ss_dssp             EEEEEETCTTTHHHHHHHHHEEEE--EEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CeEEEeeeccCHHHHHHHHhCCEE--EEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCC
Confidence            489999999999999999874344  3589999999877653    54  2344555544321    2678999998421


Q ss_pred             CcCCC------ChhHHHHHHHHhhccccCCcEEEEEecccC-c-hhHHHHHHHHHHHcCc
Q 037675          336 LDVGG------QPEKLEFLMFDFDRILRAGGLFWLDNFYCA-N-DEKKSALTRLIERFGY  387 (418)
Q Consensus       336 L~~~~------~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-~-ee~~~~~~~l~~~~Gf  387 (418)
                      .....      .......++.++.++|||||++++...... . +...+.+...+...|.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~  348 (382)
T 1wxx_A          289 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHR  348 (382)
T ss_dssp             CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            11110      013456789999999999999988765332 2 2334556666677764

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.60  E-value=3e-07  Score=89.62  Aligned_cols=118  Identities=17%  Similarity=0.248  Sum_probs=82.2

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCccceEE
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNVFDLVH  331 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~sFDlV~  331 (418)
                      +++|  .+|||+|||+|.|+..++++| ..|+  ++|+++..++.+++    .|+   +.++.+++..++ ..+.||.|+
T Consensus       123 ~~~g--~~VlD~~aG~G~~~i~~a~~g~~~V~--avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi  197 (278)
T 3k6r_A          123 AKPD--ELVVDMFAGIGHLSLPIAVYGKAKVI--AIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRIL  197 (278)
T ss_dssp             CCTT--CEEEETTCTTTTTTHHHHHHTCCEEE--EECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEE
T ss_pred             cCCC--CEEEEecCcCcHHHHHHHHhcCCeEE--EEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEE
Confidence            4566  489999999999999999887 4554  57999887776544    455   344557777765 467899998


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc---hhHHHHHHHHHHHcCcEE
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN---DEKKSALTRLIERFGYKK  389 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~---ee~~~~~~~l~~~~Gfk~  389 (418)
                      +..-..       ...++.+..++|||||++.+.++....   ++..+.+..+.+..|++.
T Consensus       198 ~~~p~~-------~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v  251 (278)
T 3k6r_A          198 MGYVVR-------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV  251 (278)
T ss_dssp             ECCCSS-------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred             ECCCCc-------HHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcE
Confidence            753211       125677888999999988665543221   223455777888889864

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.59  E-value=5.8e-08  Score=94.56  Aligned_cols=144  Identities=13%  Similarity=0.075  Sum_probs=82.6

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhc-CcEE---EEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccceEEecC
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAER-NVTV---ITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~-gV~v---v~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      ++++  .+|||+|||+|+|+.+.+++ ++..   +.+++|.....+.. ...|. +-.+.+.++...++++.||+|+|..
T Consensus        72 l~~~--~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~  148 (277)
T 3evf_A           72 VKLE--GRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGWNIITFKDKTDIHRLEPVKCDTLLCDI  148 (277)
T ss_dssp             SCCC--EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCC--CEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCCCeEEEeccceehhcCCCCccEEEecC
Confidence            4544  48999999999999988876 5432   22233331110000 00111 1112344455677889999999987


Q ss_pred             cCc---CCCChhHHHHHHHHhhccccCC-cEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEE
Q 037675          335 GLD---VGGQPEKLEFLMFDFDRILRAG-GLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSA  409 (418)
Q Consensus       335 ~L~---~~~~~~~le~~L~Ei~RVLRPG-G~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~A  409 (418)
                      +.+   ++.+....-.+|..+.++|||| |.|++..|...+++..+.+..+-..  |+.+.+... -....-.|.|+.+
T Consensus       149 apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~--F~~V~~~KP-aSR~~S~E~Y~V~  224 (277)
T 3evf_A          149 GESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRR--FGGTVIRNP-LSRNSTHEMYYVS  224 (277)
T ss_dssp             CCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH--HCCEEECCT-TSCTTCCCEEEES
T ss_pred             ccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHh--cCCEEEEeC-CCCCCCCceEEEE
Confidence            666   1111111113468889999999 9998865553355544444444333  777765443 2223445877764

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.58  E-value=9.6e-10  Score=103.76  Aligned_cols=101  Identities=15%  Similarity=0.190  Sum_probs=68.8

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCC-CccceEEe
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYD-NVFDLVHA  332 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d-~sFDlV~s  332 (418)
                      +.+.++  .+|||+|||+|.++..|++++..++  ++|+++.+++.++++-    -+.++.++...+++++ ++| .|++
T Consensus        25 ~~~~~~--~~VLDiG~G~G~~~~~l~~~~~~v~--~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~   99 (245)
T 1yub_A           25 LNLKET--DTVYEIGTGKGHLTTKLAKISKQVT--SIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVG   99 (245)
T ss_dssp             CCCCSS--EEEEECSCCCSSCSHHHHHHSSEEE--ESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEE
T ss_pred             cCCCCC--CEEEEEeCCCCHHHHHHHHhCCeEE--EEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEE
Confidence            344444  4899999999999999999886664  5899988887765542    1244567888888874 789 6666


Q ss_pred             cCcCc-----------CCCChhHHHHHH----HHhhccccCCcEEEEEe
Q 037675          333 SSGLD-----------VGGQPEKLEFLM----FDFDRILRAGGLFWLDN  366 (418)
Q Consensus       333 ~~~L~-----------~~~~~~~le~~L----~Ei~RVLRPGG~~ii~~  366 (418)
                      +--++           |+....   .++    .++.|+|||||.+.+..
T Consensus       100 n~Py~~~~~~~~~~~~~~~~~~---~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A          100 NIPYHLSTQIIKKVVFESRASD---IYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             ECCSSSCHHHHHHHHHHCCCEE---EEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             eCCccccHHHHHHHHhCCCCCe---EEEEeeHHHHHHHhCCCCchhhhh
Confidence            42221           111111   233    56999999999875543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.57  E-value=5.7e-08  Score=105.77  Aligned_cols=118  Identities=19%  Similarity=0.196  Sum_probs=80.5

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCC----ceeecccCC-CCCCCCccceEEecC-c
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLF----PLYLSLDHR-FPFYDNVFDLVHASS-G  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli----~~~~~~~e~-LPf~d~sFDlV~s~~-~  335 (418)
                      .+|||+|||+|.++.+++..|..-| +++|+|+.+++.++++    |+.    .++.+++.. ++..+++||+|++.- .
T Consensus       541 ~~VLDlg~GtG~~sl~aa~~ga~~V-~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~  619 (703)
T 3v97_A          541 KDFLNLFSYTGSATVHAGLGGARST-TTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPT  619 (703)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCSEE-EEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCS
T ss_pred             CcEEEeeechhHHHHHHHHCCCCEE-EEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCcc
Confidence            4899999999999999998875422 3589999999877653    542    334455443 455678999999853 1


Q ss_pred             Cc-------CCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcE
Q 037675          336 LD-------VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYK  388 (418)
Q Consensus       336 L~-------~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk  388 (418)
                      +.       .+....+.+.++.++.++|||||+++++.........    ...++..||+
T Consensus       620 f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~----~~~l~~~g~~  675 (703)
T 3v97_A          620 FSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMD----LDGLAKLGLK  675 (703)
T ss_dssp             BC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCC----HHHHHHTTEE
T ss_pred             ccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccC----HHHHHHcCCc
Confidence            21       1222245668899999999999999887654222221    2345677876

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.56  E-value=5.7e-07  Score=88.90  Aligned_cols=119  Identities=12%  Similarity=0.101  Sum_probs=78.9

Q ss_pred             CCeEEEECCccChHHHHHhhcC-------cEEEEeccCCCHHhHHHHHH----cCC-CceeecccCCCCCCCCccceEEe
Q 037675          265 IRIGFDIGGGSGTFAARMAERN-------VTVITNTLNVDAPYSEFIAA----RGL-FPLYLSLDHRFPFYDNVFDLVHA  332 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~g-------V~vv~~alD~s~~~l~~a~e----RGl-i~~~~~~~e~LPf~d~sFDlV~s  332 (418)
                      ..+|||+|||+|.++..++++.       ..+  .++|+++.+++.|+.    .|+ +.+..++... +.+++.||+|++
T Consensus       131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v--~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~Ii~  207 (344)
T 2f8l_A          131 NVSILDPACGTANLLTTVINQLELKGDVDVHA--SGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVIS  207 (344)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEE--EEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEE
T ss_pred             CCEEEeCCCCccHHHHHHHHHHHHhcCCCceE--EEEECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEEEE
Confidence            3589999999999998887652       344  468999999887765    354 2344455443 345678999999


Q ss_pred             cCcCcCCCChhH--------------H-HHHHHHhhccccCCcEEEEEeccc--CchhHHHHHHHHHHHcCc
Q 037675          333 SSGLDVGGQPEK--------------L-EFLMFDFDRILRAGGLFWLDNFYC--ANDEKKSALTRLIERFGY  387 (418)
Q Consensus       333 ~~~L~~~~~~~~--------------l-e~~L~Ei~RVLRPGG~~ii~~~~~--~~ee~~~~~~~l~~~~Gf  387 (418)
                      +--++++...+.              . ..++.++.+.|||||++++..+..  .... .+.+...+.+.|+
T Consensus       208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~-~~~ir~~l~~~~~  278 (344)
T 2f8l_A          208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSD-FAKVDKFIKKNGH  278 (344)
T ss_dssp             ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTT-HHHHHHHHHHHEE
T ss_pred             CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCch-HHHHHHHHHhCCe
Confidence            866654432210              1 157999999999999997776522  2222 2345555555555

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.53  E-value=1.4e-07  Score=92.18  Aligned_cols=95  Identities=22%  Similarity=0.318  Sum_probs=63.7

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccceEE
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFDLVH  331 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFDlV~  331 (418)
                      +.+.++  .+|||+|||+|.++..|++++..++  ++|+++.+++.++++    ++  +.++.+++..++++  +||+|+
T Consensus        38 ~~~~~~--~~VLDiG~G~G~lt~~La~~~~~v~--~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~D~Vv  111 (299)
T 2h1r_A           38 AKIKSS--DIVLEIGCGTGNLTVKLLPLAKKVI--TIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KFDVCT  111 (299)
T ss_dssp             HCCCTT--CEEEEECCTTSTTHHHHTTTSSEEE--EECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CCSEEE
T ss_pred             cCCCCc--CEEEEEcCcCcHHHHHHHhcCCEEE--EEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cCCEEE
Confidence            444444  5899999999999999999876664  589999999887664    33  23445677777654  899999


Q ss_pred             ecCcCcCCCChhHHHHHH---------------HHhhccccCCc
Q 037675          332 ASSGLDVGGQPEKLEFLM---------------FDFDRILRAGG  360 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L---------------~Ei~RVLRPGG  360 (418)
                      ++..++.. . ..+..++               ....|+++|+|
T Consensus       112 ~n~py~~~-~-~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G  153 (299)
T 2h1r_A          112 ANIPYKIS-S-PLIFKLISHRPLFKCAVLMFQKEFAERMLANVG  153 (299)
T ss_dssp             EECCGGGH-H-HHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred             EcCCcccc-c-HHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence            97555432 1 2222333               34668888877

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.53  E-value=1.6e-06  Score=88.79  Aligned_cols=134  Identities=14%  Similarity=0.123  Sum_probs=83.8

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCC----CCCCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHR----FPFYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~----LPf~d~sFDlV~s~~~  335 (418)
                      .+|||+|||+|.++..|++.+..++  ++|+++.+++.|++    .|+  +.++.++.+.    +|+++++||+|++.--
T Consensus       288 ~~VLDlgcG~G~~~~~la~~~~~V~--gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPP  365 (433)
T 1uwv_A          288 DRVLDLFCGMGNFTLPLATQAASVV--GVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA  365 (433)
T ss_dssp             CEEEEESCTTTTTHHHHHTTSSEEE--EEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCC
T ss_pred             CEEEECCCCCCHHHHHHHhhCCEEE--EEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCC
Confidence            5899999999999999999876664  58999999987765    344  3445566554    5677889999998421


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEEEEEc
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQK  413 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qK  413 (418)
                      .      .+...++..+. -++|++.++++.   ....+.... ..+.+.||+..+....+.- +...++=..++++|
T Consensus       366 r------~g~~~~~~~l~-~~~p~~ivyvsc---~p~tlard~-~~l~~~Gy~~~~~~~~d~F-p~t~HvE~v~ll~r  431 (433)
T 1uwv_A          366 R------AGAAGVMQQII-KLEPIRIVYVSC---NPATLARDS-EALLKAGYTIARLAMLDMF-PHTGHLESMVLFSR  431 (433)
T ss_dssp             T------TCCHHHHHHHH-HHCCSEEEEEES---CHHHHHHHH-HHHHHTTCEEEEEEEECCS-TTSSCCEEEEEEEC
T ss_pred             C------ccHHHHHHHHH-hcCCCeEEEEEC---ChHHHHhhH-HHHHHCCcEEEEEEEeccC-CCCCeEEEEEEEEE
Confidence            1      11224444444 379999888763   222222222 3445669987654443321 22223324555654

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.51  E-value=2.7e-07  Score=89.76  Aligned_cols=117  Identities=10%  Similarity=0.009  Sum_probs=79.5

Q ss_pred             CCeEEEECCccChHHHHHhhc-C-cEEEEeccCCCHHhHHHHHHc----CCCceee--cccCCCCCCCCccceEEecCcC
Q 037675          265 IRIGFDIGGGSGTFAARMAER-N-VTVITNTLNVDAPYSEFIAAR----GLFPLYL--SLDHRFPFYDNVFDLVHASSGL  336 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~-g-V~vv~~alD~s~~~l~~a~eR----Gli~~~~--~~~e~LPf~d~sFDlV~s~~~L  336 (418)
                      ..+|||+|||+|-++..++.. + ..+  .++|+++.|+++++++    |+ +...  .+. ..+.+...||+|++.-++
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~a~y--~a~DId~~~le~a~~~l~~~g~-~~~~~v~D~-~~~~p~~~~DvaL~lkti  208 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAETVY--IASDIDARLVGFVDEALTRLNV-PHRTNVADL-LEDRLDEPADVTLLLKTL  208 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTTCEE--EEEESBHHHHHHHHHHHHHTTC-CEEEEECCT-TTSCCCSCCSEEEETTCH
T ss_pred             CceeeeeccCccHHHHHHHhhCCCCEE--EEEeCCHHHHHHHHHHHHhcCC-CceEEEeee-cccCCCCCcchHHHHHHH
Confidence            569999999999999888776 3 333  3579999999987664    55 3222  222 223467889999999998


Q ss_pred             cCCCChhHHHHHHHHhhccccCCcEEEEEecc-c-Cc------hhHHHHHHHHHHHcCcE
Q 037675          337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY-C-AN------DEKKSALTRLIERFGYK  388 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~-~-~~------ee~~~~~~~l~~~~Gfk  388 (418)
                      ++..+...  ....++...|+|+|.| |+-+. . .+      +...+.|++.+.+.|+.
T Consensus       209 ~~Le~q~k--g~g~~ll~aL~~~~vv-VSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~  265 (281)
T 3lcv_B          209 PCLETQQR--GSGWEVIDIVNSPNIV-VTFPTKSLGQRSKGMFQNYSQSFESQARERSCR  265 (281)
T ss_dssp             HHHHHHST--THHHHHHHHSSCSEEE-EEEECC-------CHHHHHHHHHHHHHHHHTCC
T ss_pred             HHhhhhhh--HHHHHHHHHhCCCCEE-EeccchhhcCCCcchhhHHHHHHHHHHHhcCCc
Confidence            88743332  3444999999999977 44332 1 11      22235577777777884

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.50  E-value=8e-08  Score=91.02  Aligned_cols=66  Identities=18%  Similarity=0.298  Sum_probs=51.0

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCC-CccceEEec
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYD-NVFDLVHAS  333 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d-~sFDlV~s~  333 (418)
                      ..+|||+|||+|.++..|++++..++  ++|+++.+++.++++-    -+.++.+++..+++++ ..|+ |+++
T Consensus        31 ~~~VLDiG~G~G~lt~~l~~~~~~v~--~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~~-vv~n  101 (244)
T 1qam_A           31 HDNIFEIGSGKGHFTLELVQRCNFVT--AIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYK-IFGN  101 (244)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHSSEEE--EECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCE-EEEE
T ss_pred             CCEEEEEeCCchHHHHHHHHcCCeEE--EEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCeE-EEEe
Confidence            35899999999999999999886654  5899999999888752    2355668888898875 4564 4443

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.50  E-value=3.4e-07  Score=88.07  Aligned_cols=103  Identities=14%  Similarity=-0.006  Sum_probs=70.1

Q ss_pred             HHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCCce--eecccCCCCCCCCccc
Q 037675          255 DDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLFPL--YLSLDHRFPFYDNVFD  328 (418)
Q Consensus       255 ~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli~~--~~~~~e~LPf~d~sFD  328 (418)
                      ..++.+  +...+|||+|||+|-++..+. .+..++  ++|+++.+++++.++    |. +.  .+.+...-|. +.+||
T Consensus        98 ~~i~~~--~~p~~VLDlGCG~gpLal~~~-~~~~y~--a~DId~~~i~~ar~~~~~~g~-~~~~~v~D~~~~~~-~~~~D  170 (253)
T 3frh_A           98 DFIFSA--ETPRRVLDIACGLNPLALYER-GIASVW--GCDIHQGLGDVITPFAREKDW-DFTFALQDVLCAPP-AEAGD  170 (253)
T ss_dssp             HHHTSS--CCCSEEEEETCTTTHHHHHHT-TCSEEE--EEESBHHHHHHHHHHHHHTTC-EEEEEECCTTTSCC-CCBCS
T ss_pred             HHHhcC--CCCCeEEEecCCccHHHHHhc-cCCeEE--EEeCCHHHHHHHHHHHHhcCC-CceEEEeecccCCC-CCCcc
Confidence            334445  445799999999999999887 444443  479999999987764    43 33  2344444454 45999


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +|.+.-++|+..+.+.  ....++...|+|+|.+ |+-+
T Consensus       171 vvLllk~lh~LE~q~~--~~~~~ll~aL~~~~vv-VsfP  206 (253)
T 3frh_A          171 LALIFKLLPLLEREQA--GSAMALLQSLNTPRMA-VSFP  206 (253)
T ss_dssp             EEEEESCHHHHHHHST--THHHHHHHHCBCSEEE-EEEE
T ss_pred             hHHHHHHHHHhhhhch--hhHHHHHHHhcCCCEE-EEcC
Confidence            9999977776533222  3444888899999966 5444

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.50  E-value=7.7e-07  Score=89.27  Aligned_cols=115  Identities=14%  Similarity=0.126  Sum_probs=74.4

Q ss_pred             CeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCC--
Q 037675          266 RIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGG--  340 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~--  340 (418)
                      .+|||+|||+|.++..++++   +..+.  ++|+++.+++.|  .. +.++.++....+ +++.||+|+++=-+....  
T Consensus        41 ~~vLD~gcGtG~~~~~~~~~~~~~~~i~--gvDi~~~~~~~a--~~-~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~  114 (421)
T 2ih2_A           41 GRVLEPACAHGPFLRAFREAHGTAYRFV--GVEIDPKALDLP--PW-AEGILADFLLWE-PGEAFDLILGNPPYGIVGEA  114 (421)
T ss_dssp             CEEEEETCTTCHHHHHHHHHHCSCSEEE--EEESCTTTCCCC--TT-EEEEESCGGGCC-CSSCEEEEEECCCCCCBSCT
T ss_pred             CEEEECCCCChHHHHHHHHHhCCCCeEE--EEECCHHHHHhC--CC-CcEEeCChhhcC-ccCCCCEEEECcCccCcccc
Confidence            48999999999999999875   34554  478888777666  22 255566665554 357899999952111100  


Q ss_pred             -------Chh-----------------HHHHHHHHhhccccCCcEEEEEeccc--CchhHHHHHHHHHHHcCc
Q 037675          341 -------QPE-----------------KLEFLMFDFDRILRAGGLFWLDNFYC--ANDEKKSALTRLIERFGY  387 (418)
Q Consensus       341 -------~~~-----------------~le~~L~Ei~RVLRPGG~~ii~~~~~--~~ee~~~~~~~l~~~~Gf  387 (418)
                             ...                 ....++..+.++|||||++++..+..  ..+.. +.+.+.+.+.|+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~-~~lr~~l~~~~~  186 (421)
T 2ih2_A          115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDF-ALLREFLAREGK  186 (421)
T ss_dssp             TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGG-HHHHHHHHHHSE
T ss_pred             cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccH-HHHHHHHHhcCC
Confidence                   011                 11256889999999999997766532  22222 336666666666

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.46  E-value=3.9e-07  Score=93.57  Aligned_cols=101  Identities=18%  Similarity=0.194  Sum_probs=68.7

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccc
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFD  328 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFD  328 (418)
                      +..++.+..+  .+|||+|||+|.++..|++.+..++  ++|+++.+++.|+++    |+ +.++.+++++++.  .+||
T Consensus       282 ~~~~~~~~~~--~~VLDlgcG~G~~sl~la~~~~~V~--gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~--~~fD  355 (425)
T 2jjq_A          282 VRKVSELVEG--EKILDMYSGVGTFGIYLAKRGFNVK--GFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV--KGFD  355 (425)
T ss_dssp             HHHHHHHCCS--SEEEEETCTTTHHHHHHHHTTCEEE--EEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC--TTCS
T ss_pred             HHHhhccCCC--CEEEEeeccchHHHHHHHHcCCEEE--EEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc--cCCC
Confidence            3334333333  5899999999999999999876664  589999999877553    54 3455567776642  2899


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +|++.--....   .  +.++..+ +.|+|||.++++.
T Consensus       356 ~Vv~dPPr~g~---~--~~~~~~l-~~l~p~givyvsc  387 (425)
T 2jjq_A          356 TVIVDPPRAGL---H--PRLVKRL-NREKPGVIVYVSC  387 (425)
T ss_dssp             EEEECCCTTCS---C--HHHHHHH-HHHCCSEEEEEES
T ss_pred             EEEEcCCccch---H--HHHHHHH-HhcCCCcEEEEEC
Confidence            99985322111   1  1344444 4599999998874

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.38  E-value=3.1e-06  Score=83.37  Aligned_cols=158  Identities=14%  Similarity=0.132  Sum_probs=93.8

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc--C-cEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER--N-VTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFY  323 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~--g-V~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~  323 (418)
                      ++..++.+.+|  .+|||+|||+|+.+..|++.  + -.++  ++|+++.+++.++++    |+  +.++.++...++..
T Consensus        93 l~~~~l~~~~g--~~VLDlcaG~G~kt~~la~~~~~~g~V~--a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~  168 (309)
T 2b9e_A           93 LPAMLLDPPPG--SHVIDACAAPGNKTSHLAALLKNQGKIF--AFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS  168 (309)
T ss_dssp             HHHHHHCCCTT--CEEEESSCTTCHHHHHHHHHHTTCSEEE--EEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT
T ss_pred             HHHHHhCCCCC--CEEEEeCCChhHHHHHHHHHhCCCCEEE--EEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCcc
Confidence            34455666666  48999999999999999874  2 3443  579999988776553    55  23445666666543


Q ss_pred             C---CccceEEec------CcCcC-----CC---ChhHH-------HHHHHHhhccccCCcEEEEEecccCchhHHHHHH
Q 037675          324 D---NVFDLVHAS------SGLDV-----GG---QPEKL-------EFLMFDFDRILRAGGLFWLDNFYCANDEKKSALT  379 (418)
Q Consensus       324 d---~sFDlV~s~------~~L~~-----~~---~~~~l-------e~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~  379 (418)
                      +   ++||.|++.      +++..     |.   .+.++       ..+|....+.|+ ||+++.+.-....+|.++.+.
T Consensus       169 ~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~  247 (309)
T 2b9e_A          169 DPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVR  247 (309)
T ss_dssp             CGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHH
T ss_pred             ccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHH
Confidence            2   579999972      22221     10   01111       246778888887 998887765444455555666


Q ss_pred             HHHHHc-C-cEEEE----EEEcc-c----C------CC--CccceEEEEEEEcCC
Q 037675          380 RLIERF-G-YKKLK----WVVGE-K----G------ET--GKSEVYLSAVLQKPV  415 (418)
Q Consensus       380 ~l~~~~-G-fk~l~----W~~~~-k----~------d~--~~~e~~l~Ai~qKP~  415 (418)
                      .++++. + |+.+.    |.... .    .      .+  ...+.+|.|+++|..
T Consensus       248 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~A~l~k~~  302 (309)
T 2b9e_A          248 DALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVAVIERVE  302 (309)
T ss_dssp             HHHTTSTTTEEECCCCTTCCCBCCSSSTTGGGSEEECHHHHSSCSEEEEEEEEC-
T ss_pred             HHHHhCCCcEEEeccccccccccccccCCCCCeEEECCCCCCCCCeEEEEEEECC
Confidence            767664 3 55432    21000 0    0      00  134788999999853

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.33  E-value=2.5e-06  Score=86.83  Aligned_cols=101  Identities=12%  Similarity=0.029  Sum_probs=63.2

Q ss_pred             CCeEEEECCccChHHHHHhhc-------------------CcEEEEeccCCC---HH--------hHHHH-HHcCC--Cc
Q 037675          265 IRIGFDIGGGSGTFAARMAER-------------------NVTVITNTLNVD---AP--------YSEFI-AARGL--FP  311 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~-------------------gV~vv~~alD~s---~~--------~l~~a-~eRGl--i~  311 (418)
                      .-+|+|+||++|..+..+.+.                   .+.+.-  -|.-   =+        +.+-. .+.|.  -+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~--nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~  130 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFL--NDLFQNDFNSVFKLLPSFYRNLEKENGRKIGS  130 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEE--ECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTS
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEe--cCCCccchHHHHhhhhhhHhhhhhhccCCCCc
Confidence            357999999999888666543                   133332  3432   12        22222 22231  12


Q ss_pred             eee----cccCCCCCCCCccceEEecCcCcCCCChh-H-----------------------------------HHHHHHH
Q 037675          312 LYL----SLDHRFPFYDNVFDLVHASSGLDVGGQPE-K-----------------------------------LEFLMFD  351 (418)
Q Consensus       312 ~~~----~~~e~LPf~d~sFDlV~s~~~L~~~~~~~-~-----------------------------------le~~L~E  351 (418)
                      .+.    +....-.||+++||+||++.+|||..+.. .                                   +..+|.-
T Consensus       131 ~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~  210 (384)
T 2efj_A          131 CLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRI  210 (384)
T ss_dssp             EEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            332    24445579999999999999999865432 1                                   1223566


Q ss_pred             hhccccCCcEEEEEec
Q 037675          352 FDRILRAGGLFWLDNF  367 (418)
Q Consensus       352 i~RVLRPGG~~ii~~~  367 (418)
                      ..|.|||||.+++...
T Consensus       211 Ra~eL~pGG~mvl~~~  226 (384)
T 2efj_A          211 HSEELISRGRMLLTFI  226 (384)
T ss_dssp             HHHHEEEEEEEEEEEE
T ss_pred             HHHHhccCCeEEEEEe
Confidence            6899999999988755

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.28  E-value=1.2e-06  Score=85.98  Aligned_cols=75  Identities=15%  Similarity=0.219  Sum_probs=59.7

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCCceeecccCCCCCCCCccceEEecC
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLFPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      .+.++  .+|||||||+|.++..|++++..++  ++|+++.+++.++++    +-+.++.+++..+++++..||.|+++.
T Consensus        47 ~~~~~--~~VLEIG~G~G~lT~~La~~~~~V~--aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~Iv~Nl  122 (295)
T 3gru_A           47 NLTKD--DVVLEIGLGKGILTEELAKNAKKVY--VIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVANL  122 (295)
T ss_dssp             TCCTT--CEEEEECCTTSHHHHHHHHHSSEEE--EEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSEEEEEC
T ss_pred             CCCCc--CEEEEECCCchHHHHHHHhcCCEEE--EEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCccEEEEeC
Confidence            44444  4899999999999999999876664  479999999887764    234667789999999888999999875


Q ss_pred             cCc
Q 037675          335 GLD  337 (418)
Q Consensus       335 ~L~  337 (418)
                      -++
T Consensus       123 Py~  125 (295)
T 3gru_A          123 PYQ  125 (295)
T ss_dssp             CGG
T ss_pred             ccc
Confidence            554

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.25  E-value=2e-06  Score=87.17  Aligned_cols=51  Identities=20%  Similarity=0.170  Sum_probs=41.1

Q ss_pred             cCCCCCCCCccceEEecCcCcCCCChh-----------------------------------HHHHHHHHhhccccCCcE
Q 037675          317 DHRFPFYDNVFDLVHASSGLDVGGQPE-----------------------------------KLEFLMFDFDRILRAGGL  361 (418)
Q Consensus       317 ~e~LPf~d~sFDlV~s~~~L~~~~~~~-----------------------------------~le~~L~Ei~RVLRPGG~  361 (418)
                      ...-.||+++||+||++.+|||..+..                                   ++..+|....|.|||||.
T Consensus       141 Fy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~  220 (374)
T 3b5i_A          141 FYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGA  220 (374)
T ss_dssp             TTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred             hhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            334458999999999999999865322                                   566789999999999999


Q ss_pred             EEEEec
Q 037675          362 FWLDNF  367 (418)
Q Consensus       362 ~ii~~~  367 (418)
                      ++++-.
T Consensus       221 mvl~~~  226 (374)
T 3b5i_A          221 MFLVCL  226 (374)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            988754

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.22  E-value=4.4e-06  Score=85.68  Aligned_cols=99  Identities=11%  Similarity=0.076  Sum_probs=67.7

Q ss_pred             CeEEEECCccChHHHHHhhc---------------CcEEEEeccCCCHHhHHHHHH----cCC----CceeecccCCCCC
Q 037675          266 RIGFDIGGGSGTFAARMAER---------------NVTVITNTLNVDAPYSEFIAA----RGL----FPLYLSLDHRFPF  322 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~---------------gV~vv~~alD~s~~~l~~a~e----RGl----i~~~~~~~e~LPf  322 (418)
                      .+|||.|||+|+|...++++               +..+.  ++|+++.+++.|+.    +|+    ..+.++++...+.
T Consensus       173 ~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~--G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~  250 (445)
T 2okc_A          173 ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALH--GVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  250 (445)
T ss_dssp             CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEE--EEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             CEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEE--EEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence            48999999999998777653               13332  47999988887654    454    2445566665554


Q ss_pred             CCCccceEEecCcCcCCCCh--------------hHHHHHHHHhhccccCCcEEEEEec
Q 037675          323 YDNVFDLVHASSGLDVGGQP--------------EKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       323 ~d~sFDlV~s~~~L~~~~~~--------------~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      . ..||+|+++--+......              ..--.++.++.+.|||||++++..+
T Consensus       251 ~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          251 S-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             S-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             c-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence            3 489999998544432110              0112689999999999999977665

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.21  E-value=1.1e-06  Score=85.83  Aligned_cols=144  Identities=15%  Similarity=0.066  Sum_probs=81.0

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHH---cCC-CceeecccCCCCCCCCccceEEecC
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAA---RGL-FPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~e---RGl-i~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      +.++  ++|||+|||.|+|+.+.+++ ++..+ .++|++..+...+..   .|. +-.+...++-..++++.+|+|+|..
T Consensus        88 Lk~~--~~VLDLGaAPGGWsQvAa~~~gv~sV-~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDm  164 (282)
T 3gcz_A           88 VKPT--GIVVDLGCGRGGWSYYAASLKNVKKV-MAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDI  164 (282)
T ss_dssp             CCCC--EEEEEETCTTCHHHHHHHTSTTEEEE-EEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECC
T ss_pred             CCCC--CEEEEeCCCCCHHHHHHHHhcCCCee-eeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecC
Confidence            5555  48999999999999988865 55433 245554332111100   010 0111222233345678999999987


Q ss_pred             cCcCCCChh----HHHHHHHHhhccccCC--cEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEE
Q 037675          335 GLDVGGQPE----KLEFLMFDFDRILRAG--GLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLS  408 (418)
Q Consensus       335 ~L~~~~~~~----~le~~L~Ei~RVLRPG--G~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~  408 (418)
                      +.+ .....    ..-.+|.-..++||||  |.|++-.|...+++..+.+..+-..  |+.+.+... -....-.|.|+.
T Consensus       165 Apn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~--F~~V~~~KP-aSR~~S~E~Y~V  240 (282)
T 3gcz_A          165 GES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLK--HGGGLVRVP-LSRNSTHEMYWV  240 (282)
T ss_dssp             CCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHH--HCCEEECCT-TSCTTCCCEEEE
T ss_pred             ccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHh--cCCEEEEcC-CCcccCcceeEE
Confidence            776 33221    1112455557899999  9998866653355544434443333  777765443 222344587776


Q ss_pred             EE
Q 037675          409 AV  410 (418)
Q Consensus       409 Ai  410 (418)
                      +.
T Consensus       241 ~~  242 (282)
T 3gcz_A          241 SG  242 (282)
T ss_dssp             TT
T ss_pred             Ee
Confidence            53

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.13  E-value=1e-05  Score=80.92  Aligned_cols=114  Identities=11%  Similarity=0.119  Sum_probs=69.8

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCCCC--CCC-------------
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHRFP--FYD-------------  324 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~LP--f~d-------------  324 (418)
                      .+|||+|||+|.++..|++....|+  ++|+++.+++.|++    .|+  +.++.++++++.  +..             
T Consensus       215 ~~vLDl~cG~G~~~l~la~~~~~V~--gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~  292 (369)
T 3bt7_A          215 GDLLELYCGNGNFSLALARNFDRVL--ATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK  292 (369)
T ss_dssp             SEEEEESCTTSHHHHHHGGGSSEEE--EECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGG
T ss_pred             CEEEEccCCCCHHHHHHHhcCCEEE--EEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccc
Confidence            4799999999999999998755554  57999999987654    354  233445544331  111             


Q ss_pred             -CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEE
Q 037675          325 -NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       325 -~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                       ..||+|+..-      +..   .+..++.+.|+|+|.+++..  |........+..+.+  ||+..+...
T Consensus       293 ~~~fD~Vv~dP------Pr~---g~~~~~~~~l~~~g~ivyvs--c~p~t~ard~~~l~~--~y~~~~~~~  350 (369)
T 3bt7_A          293 SYQCETIFVDP------PRS---GLDSETEKMVQAYPRILYIS--CNPETLCKNLETLSQ--THKVERLAL  350 (369)
T ss_dssp             GCCEEEEEECC------CTT---CCCHHHHHHHTTSSEEEEEE--SCHHHHHHHHHHHHH--HEEEEEEEE
T ss_pred             cCCCCEEEECc------Ccc---ccHHHHHHHHhCCCEEEEEE--CCHHHHHHHHHHHhh--CcEEEEEEe
Confidence             3799998631      111   12346777888988886653  332233333444443  476554433

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.08  E-value=5.9e-06  Score=79.22  Aligned_cols=72  Identities=14%  Similarity=0.249  Sum_probs=54.6

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCCceeecccCCCCCCC----Cccc
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLFPLYLSLDHRFPFYD----NVFD  328 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli~~~~~~~e~LPf~d----~sFD  328 (418)
                      .+.+.++  .+|||||||+|.++..|++++..++  ++|+++.|++.++++    +-+.++++++..+++++    +.||
T Consensus        24 ~~~~~~~--~~VLEIG~G~G~lt~~La~~~~~V~--avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~   99 (255)
T 3tqs_A           24 AIHPQKT--DTLVEIGPGRGALTDYLLTECDNLA--LVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPLR   99 (255)
T ss_dssp             HHCCCTT--CEEEEECCTTTTTHHHHTTTSSEEE--EEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSCEE
T ss_pred             hcCCCCc--CEEEEEcccccHHHHHHHHhCCEEE--EEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCCeE
Confidence            3445544  4899999999999999999986654  579999999988775    23456678888888754    5688


Q ss_pred             eEEec
Q 037675          329 LVHAS  333 (418)
Q Consensus       329 lV~s~  333 (418)
                       |+++
T Consensus       100 -vv~N  103 (255)
T 3tqs_A          100 -VVGN  103 (255)
T ss_dssp             -EEEE
T ss_pred             -EEec
Confidence             5554

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.05  E-value=8e-06  Score=82.38  Aligned_cols=100  Identities=16%  Similarity=0.028  Sum_probs=64.2

Q ss_pred             CeEEEECCccChHHHHHhhc----------------C--cEEEEeccCCCHHhHHHHHHc--C----CCceee----ccc
Q 037675          266 RIGFDIGGGSGTFAARMAER----------------N--VTVITNTLNVDAPYSEFIAAR--G----LFPLYL----SLD  317 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~----------------g--V~vv~~alD~s~~~l~~a~eR--G----li~~~~----~~~  317 (418)
                      -+|+|+||++|..+..+.+.                .  +.+.  --|.-.+.-..+..+  +    .-+.+.    +..
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~--~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIF--LNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEE--EEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEE--ecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            47999999999877544433                1  3333  245443332222211  0    012222    344


Q ss_pred             CCCCCCCCccceEEecCcCcCCCCh------------------------------hHHHHHHHHhhccccCCcEEEEEec
Q 037675          318 HRFPFYDNVFDLVHASSGLDVGGQP------------------------------EKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       318 e~LPf~d~sFDlV~s~~~L~~~~~~------------------------------~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ..-.||++++|+||++.+|||..+.                              .++..+|.-..|.|||||.+++.-.
T Consensus       131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~  210 (359)
T 1m6e_X          131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred             hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence            5567999999999999999986531                              2455668888999999999988754

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.02  E-value=7.5e-06  Score=82.88  Aligned_cols=99  Identities=14%  Similarity=0.174  Sum_probs=70.5

Q ss_pred             CeEEEECCccChHHHHHhhcC----------------------------------------cEEEEeccCCCHHhHHHHH
Q 037675          266 RIGFDIGGGSGTFAARMAERN----------------------------------------VTVITNTLNVDAPYSEFIA  305 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g----------------------------------------V~vv~~alD~s~~~l~~a~  305 (418)
                      .+|||.+||+|+|+..++..+                                        ..++  ++|+++.+++.|+
T Consensus       197 ~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~--GvDid~~ai~~Ar  274 (385)
T 3ldu_A          197 RVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY--GYDIDEESIDIAR  274 (385)
T ss_dssp             SCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE--EEESCHHHHHHHH
T ss_pred             CeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE--EEECCHHHHHHHH
Confidence            589999999999987766542                                        2343  5899999998776


Q ss_pred             H----cCC---CceeecccCCCCCCCCccceEEecCcCc-CCCChhHHHHHHHHhhccccC--CcEEEEEec
Q 037675          306 A----RGL---FPLYLSLDHRFPFYDNVFDLVHASSGLD-VGGQPEKLEFLMFDFDRILRA--GGLFWLDNF  367 (418)
Q Consensus       306 e----RGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~-~~~~~~~le~~L~Ei~RVLRP--GG~~ii~~~  367 (418)
                      +    .|+   +.+..+++..++.+ .+||+|+++--+. ...+...++.++.++.++||+  ||.+++...
T Consensus       275 ~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  345 (385)
T 3ldu_A          275 ENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS  345 (385)
T ss_dssp             HHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred             HHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence            5    354   34556777777764 5899999964332 222335577888889999987  888766543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.02  E-value=6.1e-06  Score=79.96  Aligned_cols=69  Identities=16%  Similarity=0.199  Sum_probs=55.0

Q ss_pred             eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC---CCceeecccCCCCCCCC-ccceEEecCcCc
Q 037675          267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG---LFPLYLSLDHRFPFYDN-VFDLVHASSGLD  337 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG---li~~~~~~~e~LPf~d~-sFDlV~s~~~L~  337 (418)
                      +|||||||+|.++..|++++..++  ++|+++.|++.++++-   -+.++++++..+++++. .||.|+++--.+
T Consensus        49 ~VLEIG~G~G~lt~~L~~~~~~V~--avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy~  121 (271)
T 3fut_A           49 PVFEVGPGLGALTRALLEAGAEVT--AIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVANLPYH  121 (271)
T ss_dssp             CEEEECCTTSHHHHHHHHTTCCEE--EEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEEEEEEECSS
T ss_pred             eEEEEeCchHHHHHHHHHcCCEEE--EEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccEEEecCccc
Confidence            899999999999999999986554  4799999999888752   23566788888888753 689988875444

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.95  E-value=9e-06  Score=77.98  Aligned_cols=82  Identities=15%  Similarity=0.067  Sum_probs=56.4

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCH-------HhHHHHHHc----CC---CceeecccC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDA-------PYSEFIAAR----GL---FPLYLSLDH  318 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~-------~~l~~a~eR----Gl---i~~~~~~~e  318 (418)
                      .+.+.+.+..+  .+|||+|||+|.++..|++.+..|+  ++|+++       .+++.++++    |+   +.++.++.+
T Consensus        74 ~l~~a~~~~~~--~~VLDlgcG~G~~a~~lA~~g~~V~--~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~  149 (258)
T 2r6z_A           74 LIAKAVNHTAH--PTVWDATAGLGRDSFVLASLGLTVT--AFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAA  149 (258)
T ss_dssp             HHHHHTTGGGC--CCEEETTCTTCHHHHHHHHTTCCEE--EEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHH
T ss_pred             HHHHHhCcCCc--CeEEEeeCccCHHHHHHHHhCCEEE--EEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHH
Confidence            34444444333  4899999999999999999876664  479999       888776543    22   355666665


Q ss_pred             CC-C-CCC--CccceEEecCcCcC
Q 037675          319 RF-P-FYD--NVFDLVHASSGLDV  338 (418)
Q Consensus       319 ~L-P-f~d--~sFDlV~s~~~L~~  338 (418)
                      .+ + +++  ++||+|++.-.+.+
T Consensus       150 ~~l~~~~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          150 EQMPALVKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHHHHHHHHCCCSEEEECCCC--
T ss_pred             HHHHhhhccCCCccEEEECCCCCC
Confidence            53 3 444  78999999766654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=97.94  E-value=1.3e-05  Score=81.34  Aligned_cols=99  Identities=19%  Similarity=0.157  Sum_probs=69.0

Q ss_pred             CeEEEECCccChHHHHHhhc--C--------------------------------------cEEEEeccCCCHHhHHHHH
Q 037675          266 RIGFDIGGGSGTFAARMAER--N--------------------------------------VTVITNTLNVDAPYSEFIA  305 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--g--------------------------------------V~vv~~alD~s~~~l~~a~  305 (418)
                      ..|||.+||+|+++..++..  +                                      ..++  ++|+++.+++.|+
T Consensus       203 ~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~--GvDid~~al~~Ar  280 (393)
T 3k0b_A          203 RPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII--GGDIDARLIEIAK  280 (393)
T ss_dssp             SCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE--EEESCHHHHHHHH
T ss_pred             CeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE--EEECCHHHHHHHH
Confidence            58999999999998666543  2                                      2243  5799999998776


Q ss_pred             H----cCC---CceeecccCCCCCCCCccceEEecCcCcC-CCChhHHHHHHHHhhccccC--CcEEEEEec
Q 037675          306 A----RGL---FPLYLSLDHRFPFYDNVFDLVHASSGLDV-GGQPEKLEFLMFDFDRILRA--GGLFWLDNF  367 (418)
Q Consensus       306 e----RGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~~-~~~~~~le~~L~Ei~RVLRP--GG~~ii~~~  367 (418)
                      +    .|+   +.+..+++.+++.+ .+||+|+++-=+.. ..+...++.+..++.++||+  ||.+++...
T Consensus       281 ~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  351 (393)
T 3k0b_A          281 QNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS  351 (393)
T ss_dssp             HHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             HHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            5    354   45566788888765 58999999732221 22234566778888888887  888866543

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=97.92  E-value=3.2e-05  Score=78.39  Aligned_cols=99  Identities=15%  Similarity=0.111  Sum_probs=70.8

Q ss_pred             CeEEEECCccChHHHHHhhc--C--------------------------------------cEEEEeccCCCHHhHHHHH
Q 037675          266 RIGFDIGGGSGTFAARMAER--N--------------------------------------VTVITNTLNVDAPYSEFIA  305 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--g--------------------------------------V~vv~~alD~s~~~l~~a~  305 (418)
                      ..+||.+||+|+++...+..  +                                      ..++  ++|+++.+++.|+
T Consensus       196 ~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~--GvDid~~al~~Ar  273 (384)
T 3ldg_A          196 KPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS--GFDFDGRMVEIAR  273 (384)
T ss_dssp             SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE--EEESCHHHHHHHH
T ss_pred             CeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE--EEECCHHHHHHHH
Confidence            58999999999998666543  2                                      2243  5799999998776


Q ss_pred             H----cCC---CceeecccCCCCCCCCccceEEecCcCc-CCCChhHHHHHHHHhhccccC--CcEEEEEec
Q 037675          306 A----RGL---FPLYLSLDHRFPFYDNVFDLVHASSGLD-VGGQPEKLEFLMFDFDRILRA--GGLFWLDNF  367 (418)
Q Consensus       306 e----RGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~-~~~~~~~le~~L~Ei~RVLRP--GG~~ii~~~  367 (418)
                      +    .|+   +.+..+++.+++.+ .+||+|+++==+. ...+..+++.++.++.++||+  ||.+++...
T Consensus       274 ~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  344 (384)
T 3ldg_A          274 KNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN  344 (384)
T ss_dssp             HHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred             HHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence            5    354   34556788888765 4899999973222 234456677888889889987  888876544

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.91  E-value=1.3e-05  Score=78.75  Aligned_cols=138  Identities=16%  Similarity=0.169  Sum_probs=77.7

Q ss_pred             CeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHH---HcC--CCceeecccCCCCCCCCccceEEecCcCcCC
Q 037675          266 RIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIA---ARG--LFPLYLSLDHRFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~---eRG--li~~~~~~~e~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      ++|||+||++|+|+.+++++ ++..+ .++|+...+.....   ..+  ++. +...++-+-+..+.+|+|+|..+-+ .
T Consensus        83 ~~vlDLGaaPGgWsqva~~~~gv~sV-~Gvdlg~~~~~~P~~~~~~~~~iv~-~~~~~di~~l~~~~~DlVlsD~APn-s  159 (300)
T 3eld_A           83 GRVLDLGCGRGGWSYYAAAQKEVMSV-KGYTLGIEGHEKPIHMQTLGWNIVK-FKDKSNVFTMPTEPSDTLLCDIGES-S  159 (300)
T ss_dssp             EEEEEETCTTCHHHHHHHTSTTEEEE-EEECCCCTTSCCCCCCCBTTGGGEE-EECSCCTTTSCCCCCSEEEECCCCC-C
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcee-eeEEeccccccccccccccCCceEE-eecCceeeecCCCCcCEEeecCcCC-C
Confidence            68999999999999999986 65433 24565432110000   000  111 1122233345678999999987666 3


Q ss_pred             CChh----HHHHHHHHhhccccCC-cEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEE
Q 037675          340 GQPE----KLEFLMFDFDRILRAG-GLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSA  409 (418)
Q Consensus       340 ~~~~----~le~~L~Ei~RVLRPG-G~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~A  409 (418)
                      ....    ....+|.=..++|||| |.|++-.|...+++..+.+..+-..  |+.+.+... -..+...|.|+.+
T Consensus       160 G~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~--F~~V~~~KP-aSR~~S~E~Y~V~  231 (300)
T 3eld_A          160 SNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLR--FGGGIVRVP-FSRNSTHEMYYIS  231 (300)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHH--HCCEEECCT-TSCTTCCCEEEES
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHh--CCcEEEEeC-CCCCCChHHeeec
Confidence            3221    1112344557899999 9998876653455544444444344  666665433 2222345777753

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.85  E-value=7.7e-06  Score=82.77  Aligned_cols=92  Identities=15%  Similarity=0.134  Sum_probs=64.0

Q ss_pred             CeEEEECCccChHHHHHhhc-C-cEEEEeccCCCHHhHHHHHH----c---------------CC--CceeecccCCCC-
Q 037675          266 RIGFDIGGGSGTFAARMAER-N-VTVITNTLNVDAPYSEFIAA----R---------------GL--FPLYLSLDHRFP-  321 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-g-V~vv~~alD~s~~~l~~a~e----R---------------Gl--i~~~~~~~e~LP-  321 (418)
                      .+|||+|||+|.++..++++ + ..++  ++|+++..++.+++    .               |+  +.++.+++..+. 
T Consensus        49 ~~VLDl~aGtG~~~l~~a~~~~~~~V~--avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           49 KIVLDALSATGIRGIRFALETPAEEVW--LNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             SEEEESSCTTSHHHHHHHHHSSCSEEE--EEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CEEEECCCchhHHHHHHHHhCCCCeEE--EEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            48999999999999999886 3 5543  57999988876654    2               44  233445543332 


Q ss_pred             CCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          322 FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       322 f~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      ...+.||+|+..    +....   ..++....+.|||||+++++.
T Consensus       127 ~~~~~fD~I~lD----P~~~~---~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          127 ERHRYFHFIDLD----PFGSP---MEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HSTTCEEEEEEC----CSSCC---HHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCCCCEEEeC----CCCCH---HHHHHHHHHhcCCCCEEEEEe
Confidence            124579999953    22221   378889999999999988864

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.74  E-value=0.00037  Score=70.52  Aligned_cols=141  Identities=11%  Similarity=0.123  Sum_probs=83.7

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCC
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      +.+|  .+|||+||.+|+|+..|.++|..|+  ++|..+ |-....+.+.+..+.++...+..+.+.||+|+|..+..+ 
T Consensus       209 l~~G--~~vlDLGAaPGGWT~~l~~rg~~V~--aVD~~~-l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~p-  282 (375)
T 4auk_A          209 LANG--MWAVDLGACPGGWTYQLVKRNMWVY--SVDNGP-MAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEKP-  282 (375)
T ss_dssp             SCTT--CEEEEETCTTCHHHHHHHHTTCEEE--EECSSC-CCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSCH-
T ss_pred             CCCC--CEEEEeCcCCCHHHHHHHHCCCEEE--EEEhhh-cChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCCh-
Confidence            4556  5899999999999999999987775  467642 333344444445566677777767788999999776542 


Q ss_pred             CChhHHHHHHHHhhccccCC---cEEEEEecccCc--hhH---HHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEEEE
Q 037675          340 GQPEKLEFLMFDFDRILRAG---GLFWLDNFYCAN--DEK---KSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVL  411 (418)
Q Consensus       340 ~~~~~le~~L~Ei~RVLRPG---G~~ii~~~~~~~--ee~---~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~  411 (418)
                         .   .++.-+.+.|..|   +.++..-...+.  ++.   .+.+...++..||... ..+ .+.--++.|+  +..+
T Consensus       283 ---~---~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~~-l~a-khL~hdReEi--TV~~  352 (375)
T 4auk_A          283 ---A---KVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQ-IQA-RQLYHDREEV--TVHV  352 (375)
T ss_dssp             ---H---HHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCEE-EEE-ECCTTCSSEE--EEEE
T ss_pred             ---H---HhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcchh-hee-hhhccCCcEE--EEEE
Confidence               3   3444444555444   544333332221  222   2346667777788632 111 1211135563  4456


Q ss_pred             EcCCC
Q 037675          412 QKPVR  416 (418)
Q Consensus       412 qKP~~  416 (418)
                      +||..
T Consensus       353 rk~~a  357 (375)
T 4auk_A          353 RRIWA  357 (375)
T ss_dssp             EECCC
T ss_pred             Eechh
Confidence            88754

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.74  E-value=2.6e-05  Score=75.71  Aligned_cols=64  Identities=20%  Similarity=0.260  Sum_probs=48.6

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhcCcE----EEEeccCCCHHhHHHHHHc--CCCceeecccCCCCCCC
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAERNVT----VITNTLNVDAPYSEFIAAR--GLFPLYLSLDHRFPFYD  324 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~----vv~~alD~s~~~l~~a~eR--Gli~~~~~~~e~LPf~d  324 (418)
                      .+.+.++  .+|||||||+|.++..|++++..    ++  ++|+++.|++.++++  +-+.++++++..+++++
T Consensus        37 ~~~~~~~--~~VLEIG~G~G~lt~~La~~~~~~~~~V~--avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~  106 (279)
T 3uzu_A           37 AIRPERG--ERMVEIGPGLGALTGPVIARLATPGSPLH--AVELDRDLIGRLEQRFGELLELHAGDALTFDFGS  106 (279)
T ss_dssp             HHCCCTT--CEEEEECCTTSTTHHHHHHHHCBTTBCEE--EEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred             hcCCCCc--CEEEEEccccHHHHHHHHHhCCCcCCeEE--EEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence            3345544  48999999999999999987544    43  479999999998876  22356678888888754

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.69  E-value=2.3e-05  Score=75.52  Aligned_cols=102  Identities=14%  Similarity=0.025  Sum_probs=63.7

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHH-------HHHc----C-C---Cceeeccc
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEF-------IAAR----G-L---FPLYLSLD  317 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~-------a~eR----G-l---i~~~~~~~  317 (418)
                      .+.+.+.+.+|...+|||+|||+|..+..|+++|..|+  ++|.++.+.+.       +.++    + +   +.++.++.
T Consensus        77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~--~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVR--MLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEE--EEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEE--EEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            44455666665335899999999999999999886654  47999865432       2211    1 1   24555554


Q ss_pred             CC-CCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCc
Q 037675          318 HR-FPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGG  360 (418)
Q Consensus       318 e~-LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG  360 (418)
                      .+ ++..+..||+|++.-.+.+-. ..   .++.+..|+||+.+
T Consensus       155 ~~~L~~~~~~fDvV~lDP~y~~~~-~s---aavkk~~~~lr~l~  194 (258)
T 2oyr_A          155 LTALTDITPRPQVVYLDPMFPHKQ-KS---ALVKKEMRVFQSLV  194 (258)
T ss_dssp             HHHSTTCSSCCSEEEECCCCCCCC-C--------HHHHHHHHHS
T ss_pred             HHHHHhCcccCCEEEEcCCCCCcc-cc---hHHHHHHHHHHHhh
Confidence            44 343334799999986665432 22   45667778888866

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.67  E-value=4.7e-05  Score=77.57  Aligned_cols=94  Identities=17%  Similarity=0.101  Sum_probs=64.1

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH----cCCC----ceeecccCCC-C-CCCCccceEEec
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA----RGLF----PLYLSLDHRF-P-FYDNVFDLVHAS  333 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e----RGli----~~~~~~~e~L-P-f~d~sFDlV~s~  333 (418)
                      .+|||++||+|.++..++++  |..-+ +++|+++..++.+++    .|+.    .++.+++..+ . ...+.||+|++.
T Consensus        54 ~~VLDlfaGtG~~sl~aa~~~~ga~~V-~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD  132 (392)
T 3axs_A           54 VKVADPLSASGIRAIRFLLETSCVEKA-YANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD  132 (392)
T ss_dssp             EEEEESSCTTSHHHHHHHHHCSCEEEE-EEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred             CEEEECCCcccHHHHHHHHhCCCCCEE-EEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence            48999999999999999884  53322 357999988876554    4552    2334444322 1 124679999975


Q ss_pred             CcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      -    ....   +.++..+.+.|||||+++++..
T Consensus       133 P----~g~~---~~~l~~a~~~Lk~gGll~~t~t  159 (392)
T 3axs_A          133 P----FGTP---VPFIESVALSMKRGGILSLTAT  159 (392)
T ss_dssp             C----SSCC---HHHHHHHHHHEEEEEEEEEEEC
T ss_pred             C----CcCH---HHHHHHHHHHhCCCCEEEEEec
Confidence            3    2212   2678889999999999988653

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.62  E-value=5.5e-05  Score=72.04  Aligned_cols=57  Identities=18%  Similarity=0.382  Sum_probs=46.2

Q ss_pred             CeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHcCC--CceeecccCCCCCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAARGL--FPLYLSLDHRFPFYD  324 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eRGl--i~~~~~~~e~LPf~d  324 (418)
                      .+|||+|||+|.++..|++++ ..++  ++|+++.+++.+++++.  +.++++++..+++++
T Consensus        33 ~~VLDiG~G~G~lt~~L~~~~~~~v~--avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           33 NTVVEVGGGTGNLTKVLLQHPLKKLY--VIELDREMVENLKSIGDERLEVINEDASKFPFCS   92 (249)
T ss_dssp             CEEEEEESCHHHHHHHHTTSCCSEEE--EECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGG
T ss_pred             CEEEEEcCchHHHHHHHHHcCCCeEE--EEECCHHHHHHHHhccCCCeEEEEcchhhCChhH
Confidence            589999999999999999995 5554  58999999999887721  245668888888875

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.58  E-value=0.00023  Score=76.69  Aligned_cols=95  Identities=12%  Similarity=0.057  Sum_probs=61.6

Q ss_pred             CeEEEECCccChH---HHHHhhc-CcEEEEeccCCCHHh---HHHHHHcCC---CceeecccCCCCCCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTF---AARMAER-NVTVITNTLNVDAPY---SEFIAARGL---FPLYLSLDHRFPFYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~f---aa~La~~-gV~vv~~alD~s~~~---l~~a~eRGl---i~~~~~~~e~LPf~d~sFDlV~s~~~  335 (418)
                      ..|||||||+|-+   +...+++ +..+-..|++.++..   .+..++.|.   +.+++++.+++..| +.+|+|++-..
T Consensus       359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSEwM  437 (637)
T 4gqb_A          359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSELL  437 (637)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECCCC
T ss_pred             cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEEcC
Confidence            4799999999976   4444444 333322467887632   233444454   56777889888765 67999999422


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEE
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLF  362 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~  362 (418)
                       ......+.+-.+|.-.+|.|||||.+
T Consensus       438 -G~fLl~E~mlevL~Ardr~LKPgGim  463 (637)
T 4gqb_A          438 -GSFADNELSPECLDGAQHFLKDDGVS  463 (637)
T ss_dssp             -BTTBGGGCHHHHHHHHGGGEEEEEEE
T ss_pred             -cccccccCCHHHHHHHHHhcCCCcEE
Confidence             11112233446888899999999976

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.56  E-value=6e-05  Score=72.77  Aligned_cols=139  Identities=15%  Similarity=0.066  Sum_probs=75.2

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhc-Cc---EEEEeccCCCH-HhHHHHHHcCC--Cceeec-ccCCCCCCCCccceEE
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAER-NV---TVITNTLNVDA-PYSEFIAARGL--FPLYLS-LDHRFPFYDNVFDLVH  331 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~-gV---~vv~~alD~s~-~~l~~a~eRGl--i~~~~~-~~e~LPf~d~sFDlV~  331 (418)
                      +++|  .+|+|+||+.|+|+.+.+++ +|   ....+++|.+. ++.. . ..|.  +.+..+ +...+  .+..+|+|+
T Consensus        71 ikpg--~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-~-~~Gv~~i~~~~G~Df~~~--~~~~~DvVL  144 (269)
T 2px2_A           71 VQPI--GKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-Q-SYGWNIVTMKSGVDVFYK--PSEISDTLL  144 (269)
T ss_dssp             CCCC--EEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-C-STTGGGEEEECSCCGGGS--CCCCCSEEE
T ss_pred             CCCC--CEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-c-CCCceEEEeeccCCccCC--CCCCCCEEE
Confidence            4555  48999999999999999987 44   33334466311 1100 0 0121  112223 44443  356899999


Q ss_pred             ecCcCcCCCCh-----hHHHHHHHHhhccccCCc-EEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccce
Q 037675          332 ASSGLDVGGQP-----EKLEFLMFDFDRILRAGG-LFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEV  405 (418)
Q Consensus       332 s~~~L~~~~~~-----~~le~~L~Ei~RVLRPGG-~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~  405 (418)
                      |..+=. ....     ..+. +|.=..++||||| .|++-.|....++..+.+..+-..  |+.++-. .+-....-.|+
T Consensus       145 SDMAPn-SG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~--F~~vkvk-~paSR~~S~E~  219 (269)
T 2px2_A          145 CDIGES-SPSAEIEEQRTLR-ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRR--FGGGLVR-VPLSRNSNHEM  219 (269)
T ss_dssp             ECCCCC-CSCHHHHHHHHHH-HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH--HCCEEEC-CTTSCTTCCCE
T ss_pred             eCCCCC-CCccHHHHHHHHH-HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHH--cCCEEEE-CCCCCCCCccE
Confidence            965433 2111     1222 4544558999999 888866653235554444555555  5555421 11111234487


Q ss_pred             EEEE
Q 037675          406 YLSA  409 (418)
Q Consensus       406 ~l~A  409 (418)
                      |+.+
T Consensus       220 YlVa  223 (269)
T 2px2_A          220 YWVS  223 (269)
T ss_dssp             EEET
T ss_pred             EEEe
Confidence            7764

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.54  E-value=5.7e-05  Score=74.19  Aligned_cols=73  Identities=16%  Similarity=0.156  Sum_probs=53.2

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcC-----CCceeecccCCCCC--C---CC
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARG-----LFPLYLSLDHRFPF--Y---DN  325 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRG-----li~~~~~~~e~LPf--~---d~  325 (418)
                      +.+.++  .+|||+|||+|+++..++++  +..++  ++|.++.+++.|+++-     -+.+++++...++.  .   .+
T Consensus        22 L~~~~g--~~vLD~g~G~G~~s~~la~~~~~~~Vi--gvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~   97 (301)
T 1m6y_A           22 LKPEDE--KIILDCTVGEGGHSRAILEHCPGCRII--GIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIE   97 (301)
T ss_dssp             HCCCTT--CEEEETTCTTSHHHHHHHHHCTTCEEE--EEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCS
T ss_pred             cCCCCC--CEEEEEeCCcCHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCC
Confidence            344444  48999999999999999987  35554  5899999999888752     23455677766652  1   15


Q ss_pred             ccceEEecC
Q 037675          326 VFDLVHASS  334 (418)
Q Consensus       326 sFDlV~s~~  334 (418)
                      .||.|++..
T Consensus        98 ~~D~Vl~D~  106 (301)
T 1m6y_A           98 KVDGILMDL  106 (301)
T ss_dssp             CEEEEEEEC
T ss_pred             CCCEEEEcC
Confidence            899999753

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.52  E-value=0.00026  Score=67.97  Aligned_cols=57  Identities=16%  Similarity=0.267  Sum_probs=36.9

Q ss_pred             ccceEEecCcCcCCCChhH-HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675          326 VFDLVHASSGLDVGGQPEK-LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL  390 (418)
Q Consensus       326 sFDlV~s~~~L~~~~~~~~-le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l  390 (418)
                      .||+|+... +..-..++. -..+|.++.|+|||||+|+.   |+...    .+...+...||+..
T Consensus       173 ~~D~iflD~-fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t---ysaa~----~vrr~L~~aGF~v~  230 (257)
T 2qy6_A          173 KVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARPGGTLAT---FTSAG----FVRRGLQEAGFTMQ  230 (257)
T ss_dssp             CEEEEEECS-SCTTTCGGGCCHHHHHHHHHHEEEEEEEEE---SCCBH----HHHHHHHHHTEEEE
T ss_pred             eEEEEEECC-CCcccChhhcCHHHHHHHHHHcCCCcEEEE---EeCCH----HHHHHHHHCCCEEE
Confidence            799999843 332212110 13789999999999998853   33222    35666777899854

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.50  E-value=0.002  Score=63.18  Aligned_cols=125  Identities=22%  Similarity=0.330  Sum_probs=78.9

Q ss_pred             CCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc------C-----CCceeeccc-CCCCCCCCccce
Q 037675          263 GGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR------G-----LFPLYLSLD-HRFPFYDNVFDL  329 (418)
Q Consensus       263 g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR------G-----li~~~~~~~-e~LPf~d~sFDl  329 (418)
                      +..++||=||.|.|+.+..+.+. ++.-+ ..+|+++..++.+++.      |     .+.++.+++ +-+--.+++||+
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v-~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv  160 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESI-TMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV  160 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEE-EEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceE-EEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence            34579999999999999999887 44433 2469999999887653      1     123344433 333445789999


Q ss_pred             EEecCcCcCCCChhH--HHHHHHHhhccccCCcEEEEE--ecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          330 VHASSGLDVGGQPEK--LEFLMFDFDRILRAGGLFWLD--NFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       330 V~s~~~L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~--~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      |+.... ........  -+.++..+.|+|+|||.++.-  .++...+.....+..+-+.  |..+.
T Consensus       161 Ii~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~--F~~v~  223 (294)
T 3o4f_A          161 IISDCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHY--FSDVG  223 (294)
T ss_dssp             EEESCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHH--CSEEE
T ss_pred             EEEeCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhh--CCcee
Confidence            997532 22111110  126889999999999998664  3444455555544444444  54443

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.49  E-value=5.2e-05  Score=77.71  Aligned_cols=66  Identities=11%  Similarity=0.037  Sum_probs=50.9

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc------CC--CceeecccCCC-CC-CCCccceEEec
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR------GL--FPLYLSLDHRF-PF-YDNVFDLVHAS  333 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR------Gl--i~~~~~~~e~L-Pf-~d~sFDlV~s~  333 (418)
                      .+|||+|||+|..+..|++.+..|+  ++|.++.+++.|+++      |+  +.++.+++.++ +. +++.||+|++.
T Consensus        95 ~~VLDLgcG~G~~al~LA~~g~~V~--~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           95 TKVVDLTGGLGIDFIALMSKASQGI--YIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             CEEEESSCSSSHHHHHHHTTCSEEE--EEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             CEEEEeCCCchHHHHHHHhcCCEEE--EEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            5899999999999999999887664  589999999877654      65  34556666553 43 34689999984

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.49  E-value=0.00024  Score=75.05  Aligned_cols=110  Identities=13%  Similarity=0.024  Sum_probs=69.7

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhhc----C----------------cEEEEeccCCCHHhHHHHHH----cCC
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAER----N----------------VTVITNTLNVDAPYSEFIAA----RGL  309 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~----g----------------V~vv~~alD~s~~~l~~a~e----RGl  309 (418)
                      |-+++....+  .+|||.+||+|+|...++++    +                ..+  .++|+++.+++.|+.    +|+
T Consensus       161 mv~~l~p~~~--~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i--~GiEid~~~~~lA~~nl~l~gi  236 (541)
T 2ar0_A          161 IIHLLKPQPR--EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF--IGLELVPGTRRLALMNCLLHDI  236 (541)
T ss_dssp             HHHHHCCCTT--CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSE--EEEESCHHHHHHHHHHHHTTTC
T ss_pred             HHHHhccCCC--CeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceE--EEEcCCHHHHHHHHHHHHHhCC
Confidence            3344433333  48999999999998666543    1                133  357999998887765    354


Q ss_pred             C-------ceeecccCCCC-CCCCccceEEecCcCcC--CCC---------hhHHHHHHHHhhccccCCcEEEEEec
Q 037675          310 F-------PLYLSLDHRFP-FYDNVFDLVHASSGLDV--GGQ---------PEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       310 i-------~~~~~~~e~LP-f~d~sFDlV~s~~~L~~--~~~---------~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .       .+..+++...+ .....||+|+++=-+..  +..         ...--.++..+.+.|||||++.+..+
T Consensus       237 ~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p  313 (541)
T 2ar0_A          237 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP  313 (541)
T ss_dssp             CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence            2       34455544333 44678999999733322  110         11112688999999999999977665

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.47  E-value=0.00014  Score=79.01  Aligned_cols=96  Identities=14%  Similarity=0.112  Sum_probs=61.8

Q ss_pred             CeEEEECCccChHHH---HHhh-cC---------cEEEEeccCCCHHhH---HHHHHcC---CCceeecccCCCCCC---
Q 037675          266 RIGFDIGGGSGTFAA---RMAE-RN---------VTVITNTLNVDAPYS---EFIAARG---LFPLYLSLDHRFPFY---  323 (418)
Q Consensus       266 r~VLDvGCGtG~faa---~La~-~g---------V~vv~~alD~s~~~l---~~a~eRG---li~~~~~~~e~LPf~---  323 (418)
                      ..|||||||+|-+..   ..++ .+         ..+-.+++|.++...   +.....|   .+.++.++.+++..|   
T Consensus       411 ~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~  490 (745)
T 3ua3_A          411 VVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKD  490 (745)
T ss_dssp             EEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHH
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhccccccc
Confidence            379999999998852   1111 12         222225678886433   2222334   367778888888775   


Q ss_pred             --CCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEE
Q 037675          324 --DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLF  362 (418)
Q Consensus       324 --d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~  362 (418)
                        ++..|+|++-.. ....+.+.+...|.-++|.|||||.+
T Consensus       491 ~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~  530 (745)
T 3ua3_A          491 RGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTIS  530 (745)
T ss_dssp             TTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred             CCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEE
Confidence              688999999543 22223344457888889999999976

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.44  E-value=0.00035  Score=76.02  Aligned_cols=99  Identities=17%  Similarity=0.056  Sum_probs=62.8

Q ss_pred             CeEEEECCccChHHHHHhhc--------------------------------------------CcEEEEeccCCCHHhH
Q 037675          266 RIGFDIGGGSGTFAARMAER--------------------------------------------NVTVITNTLNVDAPYS  301 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--------------------------------------------gV~vv~~alD~s~~~l  301 (418)
                      ..+||.+||+|+++...+..                                            ...+  .++|+++.++
T Consensus       192 ~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i--~G~Did~~av  269 (703)
T 3v97_A          192 TPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHF--YGSDSDARVI  269 (703)
T ss_dssp             SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCE--EEEESCHHHH
T ss_pred             CeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccE--EEEECCHHHH
Confidence            58999999999998655432                                            1234  3579999999


Q ss_pred             HHHHH----cCC---CceeecccCCC--CCCCCccceEEecCcCc-CCCChhHHHHHHHHhhcc---ccCCcEEEEEe
Q 037675          302 EFIAA----RGL---FPLYLSLDHRF--PFYDNVFDLVHASSGLD-VGGQPEKLEFLMFDFDRI---LRAGGLFWLDN  366 (418)
Q Consensus       302 ~~a~e----RGl---i~~~~~~~e~L--Pf~d~sFDlV~s~~~L~-~~~~~~~le~~L~Ei~RV---LRPGG~~ii~~  366 (418)
                      +.|++    .|+   +.+..+++..+  |+.+++||+|+++==+. .+.....++.+..++.++   +.|||.+++..
T Consensus       270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt  347 (703)
T 3v97_A          270 QRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFS  347 (703)
T ss_dssp             HHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence            87655    465   34455677666  44455899999972111 122333445555555544   55899987754

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.35  E-value=0.0038  Score=65.98  Aligned_cols=98  Identities=16%  Similarity=0.037  Sum_probs=63.7

Q ss_pred             eEEEECCccChHHHHHhhc-----------------CcEEEEeccCCCHHhHHHHHH----cCCC-ce--eecccCCCC-
Q 037675          267 IGFDIGGGSGTFAARMAER-----------------NVTVITNTLNVDAPYSEFIAA----RGLF-PL--YLSLDHRFP-  321 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~-----------------gV~vv~~alD~s~~~l~~a~e----RGli-~~--~~~~~e~LP-  321 (418)
                      +|||.+||+|+|...+++.                 .+.+  .++|+++.+++.|+.    +|+- .+  ..+++-..| 
T Consensus       247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i--~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~  324 (544)
T 3khk_A          247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISV--YGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ  324 (544)
T ss_dssp             EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEE--EECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred             eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceE--EEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence            8999999999987665432                 2333  468999988887654    4542 22  344443333 


Q ss_pred             CCCCccceEEec--CcCcCCCC-------------------------hhHHHHHHHHhhccccCCcEEEEEec
Q 037675          322 FYDNVFDLVHAS--SGLDVGGQ-------------------------PEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       322 f~d~sFDlV~s~--~~L~~~~~-------------------------~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +.+..||+|+++  .....|..                         ..++ .++..+.+.|||||++.+..+
T Consensus       325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~-~Fl~~~l~~Lk~gGr~aiVlP  396 (544)
T 3khk_A          325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANF-AWMLHMLYHLAPTGSMALLLA  396 (544)
T ss_dssp             CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHH-HHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhH-HHHHHHHHHhccCceEEEEec
Confidence            557899999996  22211211                         0111 578899999999999866554

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.30  E-value=0.00017  Score=68.82  Aligned_cols=73  Identities=12%  Similarity=0.137  Sum_probs=50.6

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhcCcE--EEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCC-----c
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAERNVT--VITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDN-----V  326 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~gV~--vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~-----s  326 (418)
                      +.+.++  .+|||||||+|.++. +.. +..  ++  ++|+++.|++.++++-    -+.++++++..+++++.     .
T Consensus        17 ~~~~~~--~~VLEIG~G~G~lt~-l~~-~~~~~v~--avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~   90 (252)
T 1qyr_A           17 INPQKG--QAMVEIGPGLAALTE-PVG-ERLDQLT--VIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQ   90 (252)
T ss_dssp             HCCCTT--CCEEEECCTTTTTHH-HHH-TTCSCEE--EECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTS
T ss_pred             cCCCCc--CEEEEECCCCcHHHH-hhh-CCCCeEE--EEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcccCC
Confidence            345544  489999999999999 754 333  43  4799999999988763    13456688888877542     3


Q ss_pred             cceEEecCcC
Q 037675          327 FDLVHASSGL  336 (418)
Q Consensus       327 FDlV~s~~~L  336 (418)
                      .|.|+++--.
T Consensus        91 ~~~vvsNlPY  100 (252)
T 1qyr_A           91 PLRVFGNLPY  100 (252)
T ss_dssp             CEEEEEECCT
T ss_pred             ceEEEECCCC
Confidence            4677776433

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.15  E-value=0.0018  Score=60.19  Aligned_cols=91  Identities=12%  Similarity=0.089  Sum_probs=59.3

Q ss_pred             CCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHH----cCC-----CceeecccCC---------------
Q 037675          265 IRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAA----RGL-----FPLYLSLDHR---------------  319 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~e----RGl-----i~~~~~~~e~---------------  319 (418)
                      .++||++|||  ..+..|++. +-.++  ++|.++...+.|++    .|+     +.++++++..               
T Consensus        31 a~~VLEiGtG--ySTl~lA~~~~g~Vv--tvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~  106 (202)
T 3cvo_A           31 AEVILEYGSG--GSTVVAAELPGKHVT--SVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS  106 (202)
T ss_dssp             CSEEEEESCS--HHHHHHHTSTTCEEE--EEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred             CCEEEEECch--HHHHHHHHcCCCEEE--EEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence            3699999985  566677765 44443  46888877766543    354     3445554322               


Q ss_pred             CC--------C-CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          320 FP--------F-YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       320 LP--------f-~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ++        . ..++||+|+...-.     ..   ..+....+.|||||++++++.
T Consensus       107 l~~~~~~i~~~~~~~~fDlIfIDg~k-----~~---~~~~~~l~~l~~GG~Iv~DNv  155 (202)
T 3cvo_A          107 YPDYPLAVWRTEGFRHPDVVLVDGRF-----RV---GCALATAFSITRPVTLLFDDY  155 (202)
T ss_dssp             TTHHHHGGGGCTTCCCCSEEEECSSS-----HH---HHHHHHHHHCSSCEEEEETTG
T ss_pred             HHHHhhhhhccccCCCCCEEEEeCCC-----ch---hHHHHHHHhcCCCeEEEEeCC
Confidence            33        1 23789999986522     11   556667799999999977764

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.01  E-value=0.002  Score=68.03  Aligned_cols=100  Identities=13%  Similarity=0.014  Sum_probs=66.0

Q ss_pred             CCeEEEECCccChHHHHHhhc-----CcEEEEeccCCCHHhHHHHHH----cCCC----ceeecccCCC--C-CCCCccc
Q 037675          265 IRIGFDIGGGSGTFAARMAER-----NVTVITNTLNVDAPYSEFIAA----RGLF----PLYLSLDHRF--P-FYDNVFD  328 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~-----gV~vv~~alD~s~~~l~~a~e----RGli----~~~~~~~e~L--P-f~d~sFD  328 (418)
                      ..+|+|.+||+|+|...++++     ...+  .++|+++.+.+.|+.    +|+.    .+..+++...  | +.+..||
T Consensus       222 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i--~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD  299 (542)
T 3lkd_A          222 GFTLYDATMGSGSLLLNAKRYSRQPQTVVY--FGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD  299 (542)
T ss_dssp             TCEEEETTCTTSTTGGGHHHHCSCTTTCEE--EEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred             CCEEeecccchhHHHHHHHHHHHhccCceE--EEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence            458999999999988766654     3444  357898888877654    4652    2445555444  4 4578999


Q ss_pred             eEEec--CcCcCCCC-------------------hhHHHHHHHHhhcccc-CCcEEEEEec
Q 037675          329 LVHAS--SGLDVGGQ-------------------PEKLEFLMFDFDRILR-AGGLFWLDNF  367 (418)
Q Consensus       329 lV~s~--~~L~~~~~-------------------~~~le~~L~Ei~RVLR-PGG~~ii~~~  367 (418)
                      +|+++  ....+...                   ..++ .++..+.+.|| |||++.+..+
T Consensus       300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~-~Fl~~~l~~Lk~~gGr~a~VlP  359 (542)
T 3lkd_A          300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADF-AFLLHGYYHLKQDNGVMAIVLP  359 (542)
T ss_dssp             EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHH-HHHHHHHHTBCTTTCEEEEEEE
T ss_pred             EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhH-HHHHHHHHHhCCCceeEEEEec
Confidence            99986  22111000                   0111 47899999999 9999866554

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=96.92  E-value=0.0036  Score=62.96  Aligned_cols=129  Identities=11%  Similarity=0.033  Sum_probs=77.2

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC--------CceeecccCCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL--------FPLYLSLDHRF  320 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl--------i~~~~~~~e~L  320 (418)
                      +...+|+..+|.  +|||+-+|.|+=+.+|++.+-....++.|+++.-++.+.+    .|.        +.+...+...+
T Consensus       139 l~~~~L~~~pg~--~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~  216 (359)
T 4fzv_A          139 LPVLALGLQPGD--IVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKW  216 (359)
T ss_dssp             HHHHHHCCCTTE--EEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGH
T ss_pred             HHHHHhCCCCCC--EEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhc
Confidence            344556677774  8999999999999999887532211457999865544332    232        11222344444


Q ss_pred             C-CCCCccceEEe----cC----cCcC-----CC-ChhHH-------HHHHHHhhccccCCcEEEEEecccCchhHHHHH
Q 037675          321 P-FYDNVFDLVHA----SS----GLDV-----GG-QPEKL-------EFLMFDFDRILRAGGLFWLDNFYCANDEKKSAL  378 (418)
Q Consensus       321 P-f~d~sFDlV~s----~~----~L~~-----~~-~~~~l-------e~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~  378 (418)
                      + ...+.||.|.+    ++    ++..     |. .+.++       ..+|....+.|||||+++.+.-.-..+|.++.+
T Consensus       217 ~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV  296 (359)
T 4fzv_A          217 GELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVV  296 (359)
T ss_dssp             HHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHH
T ss_pred             chhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHH
Confidence            3 45678999996    22    1110     11 11111       357778889999999998776544445544555


Q ss_pred             HHHHH
Q 037675          379 TRLIE  383 (418)
Q Consensus       379 ~~l~~  383 (418)
                      ..+++
T Consensus       297 ~~~L~  301 (359)
T 4fzv_A          297 QGAIE  301 (359)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.85  E-value=0.02  Score=56.38  Aligned_cols=121  Identities=17%  Similarity=0.168  Sum_probs=69.0

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHH-----hHHHHHHcCCCceeec-ccCCCCCCCCccceEEe
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAP-----YSEFIAARGLFPLYLS-LDHRFPFYDNVFDLVHA  332 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~-----~l~~a~eRGli~~~~~-~~e~LPf~d~sFDlV~s  332 (418)
                      +.++.  +|||+||++|+|+.+.+.+ |+.-| .++|+...     ++-.-+.-.++-+..+ +...++-  ..+|+|+|
T Consensus        92 l~~~~--~VlDLGaapGGwsq~~~~~~gv~~V-~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivc  166 (321)
T 3lkz_A           92 LEPVG--KVIDLGCGRGGWCYYMATQKRVQEV-RGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLC  166 (321)
T ss_dssp             CCCCE--EEEEETCTTCHHHHHHTTCTTEEEE-EEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSEEEE
T ss_pred             CCCCC--EEEEeCCCCCcHHHHHHhhcCCCEE-EEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCEEEE
Confidence            55553  8999999999999988776 77644 45676433     1100001112233333 4455543  66999999


Q ss_pred             cCcCcCCCChh----HHHHHHHHhhccccCC-cEEEEEecccCchhHHHHHHHHHHHcC
Q 037675          333 SSGLDVGGQPE----KLEFLMFDFDRILRAG-GLFWLDNFYCANDEKKSALTRLIERFG  386 (418)
Q Consensus       333 ~~~L~~~~~~~----~le~~L~Ei~RVLRPG-G~~ii~~~~~~~ee~~~~~~~l~~~~G  386 (418)
                      .-. ..-..+.    .--.+|.=+.+.|++| |-|++-.+....++..+.+..+=..+|
T Consensus       167 Dig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~fg  224 (321)
T 3lkz_A          167 DIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRRYG  224 (321)
T ss_dssp             CCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHHHC
T ss_pred             ECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHHhC
Confidence            755 3222221    1112555557889999 888875554434554444444444433

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=96.77  E-value=0.001  Score=59.27  Aligned_cols=83  Identities=8%  Similarity=0.142  Sum_probs=54.6

Q ss_pred             CeEEEECCccC-hHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCC--CccceEEecCcCcCCCC
Q 037675          266 RIGFDIGGGSG-TFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYD--NVFDLVHASSGLDVGGQ  341 (418)
Q Consensus       266 r~VLDvGCGtG-~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d--~sFDlV~s~~~L~~~~~  341 (418)
                      .+|||||||.| ..|.+|++ .|+.++  ++|+++..++         ++.++.-+ |..+  +.||+|++.+      +
T Consensus        37 ~rVlEVG~G~g~~vA~~La~~~g~~V~--atDInp~Av~---------~v~dDiF~-P~~~~Y~~~DLIYsir------P   98 (153)
T 2k4m_A           37 TRVVEVGAGRFLYVSDYIRKHSKVDLV--LTDIKPSHGG---------IVRDDITS-PRMEIYRGAALIYSIR------P   98 (153)
T ss_dssp             SEEEEETCTTCCHHHHHHHHHSCCEEE--EECSSCSSTT---------EECCCSSS-CCHHHHTTEEEEEEES------C
T ss_pred             CcEEEEccCCChHHHHHHHHhCCCeEE--EEECCccccc---------eEEccCCC-CcccccCCcCEEEEcC------C
Confidence            48999999999 69999997 898775  4677665443         45555433 3332  4799999854      2


Q ss_pred             hhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          342 PEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       342 ~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      +.++...+.++.+-.  |.-++|....
T Consensus        99 P~El~~~i~~lA~~v--~adliI~pL~  123 (153)
T 2k4m_A           99 PAEIHSSLMRVADAV--GARLIIKPLT  123 (153)
T ss_dssp             CTTTHHHHHHHHHHH--TCEEEEECBT
T ss_pred             CHHHHHHHHHHHHHc--CCCEEEEcCC
Confidence            233446666666543  5556666553

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=96.51  E-value=0.011  Score=65.49  Aligned_cols=100  Identities=10%  Similarity=0.009  Sum_probs=62.8

Q ss_pred             CeEEEECCccChHHHHHhhcC-----cEEEEeccCCCHHhHHHH--HH--------cCCCc-eee-cccCCC-CCCCCcc
Q 037675          266 RIGFDIGGGSGTFAARMAERN-----VTVITNTLNVDAPYSEFI--AA--------RGLFP-LYL-SLDHRF-PFYDNVF  327 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g-----V~vv~~alD~s~~~l~~a--~e--------RGli~-~~~-~~~e~L-Pf~d~sF  327 (418)
                      .+|||.|||+|.|...++++.     ..+  .++|+++.+++.|  +.        .|+.. .+. ++.... +...+.|
T Consensus       323 ~rVLDPaCGSG~FLIaaA~~l~ei~~~~I--yGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          323 EVISDPAAGSGNLLATVSAGFNNVMPRQI--WANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             CEEEETTCTTSHHHHHHHHTSTTCCGGGE--EEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CEEEECCCCccHHHHHHHHHhcccCCCeE--EEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            589999999999998888752     233  3579998888877  22        12211 122 233222 2346789


Q ss_pred             ceEEecCcCc-CCCChh-------------------------HHHHHHHHhhccccCCcEEEEEec
Q 037675          328 DLVHASSGLD-VGGQPE-------------------------KLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       328 DlV~s~~~L~-~~~~~~-------------------------~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      |+|+++==+. .+....                         ....++..+.+.|||||++.+..+
T Consensus       401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP  466 (878)
T 3s1s_A          401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP  466 (878)
T ss_dssp             EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence            9999962221 011111                         123467889999999999977655

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.40  E-value=0.02  Score=55.60  Aligned_cols=73  Identities=12%  Similarity=0.149  Sum_probs=48.4

Q ss_pred             Cceeeccc-CCCC-CCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCc
Q 037675          310 FPLYLSLD-HRFP-FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGY  387 (418)
Q Consensus       310 i~~~~~~~-e~LP-f~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gf  387 (418)
                      +.++.+++ +.+| +++++||+||...-.     .+....+|..+.+.|+|||++++++..+. +...+.+.++.+..|.
T Consensus       191 I~li~Gda~etL~~~~~~~~d~vfIDaD~-----y~~~~~~Le~~~p~L~pGGiIv~DD~~~~-~G~~~Av~Ef~~~~~i  264 (282)
T 2wk1_A          191 VRFLPGWFKDTLPTAPIDTLAVLRMDGDL-----YESTWDTLTNLYPKVSVGGYVIVDDYMMC-PPCKDAVDEYRAKFDI  264 (282)
T ss_dssp             EEEEESCHHHHSTTCCCCCEEEEEECCCS-----HHHHHHHHHHHGGGEEEEEEEEESSCTTC-HHHHHHHHHHHHHTTC
T ss_pred             eEEEEeCHHHHHhhCCCCCEEEEEEcCCc-----cccHHHHHHHHHhhcCCCEEEEEcCCCCC-HHHHHHHHHHHHhcCC
Confidence            34555643 3344 346789999986521     23334788899999999999998887432 2334557777777775


Q ss_pred             E
Q 037675          388 K  388 (418)
Q Consensus       388 k  388 (418)
                      +
T Consensus       265 ~  265 (282)
T 2wk1_A          265 A  265 (282)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=96.34  E-value=0.046  Score=55.40  Aligned_cols=124  Identities=13%  Similarity=0.159  Sum_probs=73.5

Q ss_pred             CCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC--------------CceeecccC----CCCCCCC
Q 037675          264 GIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL--------------FPLYLSLDH----RFPFYDN  325 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl--------------i~~~~~~~e----~LPf~d~  325 (418)
                      ..++||=||.|.|+.+..+.+.+..-+ ..+|+++..++.+++--.              +.++++++.    +.+-..+
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V-~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMV-TMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEE-EEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCcee-EEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            357999999999999999988764332 347999999998887410              112233221    1112346


Q ss_pred             ccceEEecCcCcC-CCCh----h--HHHHHHHHhhccccCCcEEEEEec-ccCchhHHHHHHHHHHHcCcEEE
Q 037675          326 VFDLVHASSGLDV-GGQP----E--KLEFLMFDFDRILRAGGLFWLDNF-YCANDEKKSALTRLIERFGYKKL  390 (418)
Q Consensus       326 sFDlV~s~~~L~~-~~~~----~--~le~~L~Ei~RVLRPGG~~ii~~~-~~~~ee~~~~~~~l~~~~Gfk~l  390 (418)
                      .||+|+....-.. ...+    .  --+.++..+.|+|+|||.++.-.. .+..+. ...+.+.+++. |..+
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~-~~~i~~tl~~v-F~~v  354 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEA-LSLYEEQLGRL-YCPV  354 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHH-HHHHHHHHTTS-SSCE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhH-HHHHHHHHHHh-CCcc
Confidence            7999998532111 1111    1  124678889999999998866332 122222 23345555554 4434

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.14  E-value=0.036  Score=54.67  Aligned_cols=138  Identities=13%  Similarity=0.045  Sum_probs=76.1

Q ss_pred             cCCCCCCeEEEECC------ccChHHHH-HhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEe
Q 037675          260 LGSGGIRIGFDIGG------GSGTFAAR-MAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHA  332 (418)
Q Consensus       260 l~~g~~r~VLDvGC------GtG~faa~-La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s  332 (418)
                      .+.|  .+|||+|+      -.|++..+ +...|-.+++  +|+.+-..      ...-.+.+++..+.. .+.||+|++
T Consensus       107 vp~g--mrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVa--vDL~~~~s------da~~~IqGD~~~~~~-~~k~DLVIS  175 (344)
T 3r24_A          107 VPYN--MRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVD--SDLNDFVS------DADSTLIGDCATVHT-ANKWDLIIS  175 (344)
T ss_dssp             CCTT--CEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEE--EESSCCBC------SSSEEEESCGGGEEE-SSCEEEEEE
T ss_pred             ecCC--CEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEE--eeCccccc------CCCeEEEcccccccc-CCCCCEEEe
Confidence            4445  59999997      45664322 2222345553  45533110      111225577655433 478999999


Q ss_pred             cCcCc---CCC-C----hhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccc
Q 037675          333 SSGLD---VGG-Q----PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSE  404 (418)
Q Consensus       333 ~~~L~---~~~-~----~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e  404 (418)
                      ..+=.   +.. +    ..-.|.++.=..++|+|||.|++--|...++   +.+.++.+  .|+.++-.. .....+-.|
T Consensus       176 DMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~---~~L~~lrk--~F~~VK~fK-~ASRa~SsE  249 (344)
T 3r24_A          176 DMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN---ADLYKLMG--HFSWWTAFV-TNVNASSSE  249 (344)
T ss_dssp             CCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC---HHHHHHHT--TEEEEEEEE-EGGGTTSSC
T ss_pred             cCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCH---HHHHHHHh--hCCeEEEEC-CCCCCCCee
Confidence            53311   111 1    1123444555567899999998887755443   23555554  477666432 222234569


Q ss_pred             eEEEEEEEcC
Q 037675          405 VYLSAVLQKP  414 (418)
Q Consensus       405 ~~l~Ai~qKP  414 (418)
                      .|+.++--|-
T Consensus       250 vYLVG~gfKg  259 (344)
T 3r24_A          250 AFLIGANYLG  259 (344)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEeeeccC
Confidence            9999987764

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.09  E-value=0.0055  Score=59.20  Aligned_cols=53  Identities=17%  Similarity=0.155  Sum_probs=40.4

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR  307 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR  307 (418)
                      ++..+|........+|||.+||+|+.+..+++.|-.++  ++|+++.+++.|++|
T Consensus       224 l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~~~~--g~e~~~~~~~~a~~r  276 (297)
T 2zig_A          224 LAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGRRAL--GVELVPRYAQLAKER  276 (297)
T ss_dssp             HHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTTCEEE--EEESCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEE--EEeCCHHHHHHHHHH
Confidence            55555543212234899999999999999999887775  479999999988775

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=95.96  E-value=0.052  Score=52.01  Aligned_cols=120  Identities=15%  Similarity=0.116  Sum_probs=67.2

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHh-----HHHHHHcCCCceeec-ccCCCCCCCCccceEEe
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPY-----SEFIAARGLFPLYLS-LDHRFPFYDNVFDLVHA  332 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~-----l~~a~eRGli~~~~~-~~e~LPf~d~sFDlV~s  332 (418)
                      +.++.  +|||+||++|+|+.+.+.+ ++.-| .++|+...-     +-..+--+++.+..+ +...++  +..+|.|+|
T Consensus        76 l~~g~--~VvDLGaapGGWSq~~a~~~g~~~V-~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~--~~~~Dtllc  150 (267)
T 3p8z_A           76 VIPEG--RVIDLGCGRGGWSYYCAGLKKVTEV-RGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLP--PEKCDTLLC  150 (267)
T ss_dssp             SCCCE--EEEEESCTTSHHHHHHHTSTTEEEE-EEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCC--CCCCSEEEE
T ss_pred             CCCCC--EEEEcCCCCCcHHHHHHHhcCCCEE-EEEecCCCCccCcchhhhcCcCceEEEeccceeecC--CccccEEEE
Confidence            55553  8999999999999988776 66644 456764321     110111122333334 445554  366999999


Q ss_pred             cCcCcCCC---ChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHc
Q 037675          333 SSGLDVGG---QPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERF  385 (418)
Q Consensus       333 ~~~L~~~~---~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~  385 (418)
                      .-.=..-.   +...--.+|.=+.+.|++ |-|++-.+....++..+.+..+=..+
T Consensus       151 DIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq~~f  205 (267)
T 3p8z_A          151 DIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQRKH  205 (267)
T ss_dssp             CCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHHHHH
T ss_pred             ecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHHHHh
Confidence            64332211   111111256666789999 77877555444444434444444443

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=95.94  E-value=0.11  Score=51.26  Aligned_cols=143  Identities=15%  Similarity=0.144  Sum_probs=81.3

Q ss_pred             CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHcC-CCceeecccCCCCC---CCCccceEEecC---cC
Q 037675          266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAARG-LFPLYLSLDHRFPF---YDNVFDLVHASS---GL  336 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eRG-li~~~~~~~e~LPf---~d~sFDlV~s~~---~L  336 (418)
                      .+|+|+-||.|+++..+.+.|  ..++ .++|.++..++..+..- -...+.+++..+..   +...+|+|+.+-   -|
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v-~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f   81 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVV-AAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF   81 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEE-EEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEE-EEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence            379999999999999999888  4454 56899988887766652 22345566655531   112589999862   23


Q ss_pred             cCCCChhH----HHHHHH---Hhhcccc--CCcEEEEEeccc-CchhHHHHHHHHHHHcCcEEEEEEEcccCC---C-Cc
Q 037675          337 DVGGQPEK----LEFLMF---DFDRILR--AGGLFWLDNFYC-ANDEKKSALTRLIERFGYKKLKWVVGEKGE---T-GK  402 (418)
Q Consensus       337 ~~~~~~~~----le~~L~---Ei~RVLR--PGG~~ii~~~~~-~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d---~-~~  402 (418)
                      .......+    ...++.   ++.+.+|  |.- |++..... ......+.+...++.+||. +.|.+..-.+   + .|
T Consensus        82 S~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~-~~~ENV~~l~~~~~~~~i~~~l~~~GY~-v~~~vl~a~~~GvPQ~R  159 (343)
T 1g55_A           82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPKY-ILLENVKGFEVSSTRDLLIQTIENCGFQ-YQEFLLSPTSLGIPNSR  159 (343)
T ss_dssp             --------------CHHHHHHHHGGGCSSCCSE-EEEEEETTGGGSHHHHHHHHHHHHTTEE-EEEEEECGGGGTCSCCC
T ss_pred             hhcCCcCCccCccchHHHHHHHHHHHhcCCCCE-EEEeCCccccCHHHHHHHHHHHHHCCCe-eEEEEEEHHHCCCCCcc
Confidence            32211111    112444   4444555  764 44433321 1123345577778899996 5676655433   2 45


Q ss_pred             cceEEEEEE
Q 037675          403 SEVYLSAVL  411 (418)
Q Consensus       403 ~e~~l~Ai~  411 (418)
                      ..+|+.++.
T Consensus       160 ~R~~iv~~~  168 (343)
T 1g55_A          160 LRYFLIAKL  168 (343)
T ss_dssp             CEEEEEEEE
T ss_pred             cEEEEEEEe
Confidence            556666653

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.82  E-value=0.11  Score=51.09  Aligned_cols=142  Identities=11%  Similarity=0.065  Sum_probs=82.4

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCC-CCccceEEec---CcCcCC--
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFY-DNVFDLVHAS---SGLDVG--  339 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~-d~sFDlV~s~---~~L~~~--  339 (418)
                      -+++|+-||.|+++..+...|..++ .++|.++..++..+..-- ....++...+... -..+|+|+.+   .-++..  
T Consensus        12 ~~~~dLFaG~Gg~~~g~~~aG~~~v-~~~e~d~~a~~t~~~N~~-~~~~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ag~   89 (327)
T 2c7p_A           12 LRFIDLFAGLGGFRLALESCGAECV-YSNEWDKYAQEVYEMNFG-EKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGK   89 (327)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTCEEE-EEECCCHHHHHHHHHHHS-CCCBSCGGGSCGGGSCCCSEEEEECCCTTTCTTSC
T ss_pred             CcEEEECCCcCHHHHHHHHCCCeEE-EEEeCCHHHHHHHHHHcC-CCCcCCHHHcCHhhCCCCCEEEECCCCCCcchhcc
Confidence            4899999999999999999998776 578998877765544311 1114444433211 1248999986   223211  


Q ss_pred             -----CChhHHHHHHHHhhccccCCcEEEEEeccc----CchhHHHHHHHHHHHcCcEEEEEEEcccCC---C-CccceE
Q 037675          340 -----GQPEKLEFLMFDFDRILRAGGLFWLDNFYC----ANDEKKSALTRLIERFGYKKLKWVVGEKGE---T-GKSEVY  406 (418)
Q Consensus       340 -----~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~----~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d---~-~~~e~~  406 (418)
                           +.+..+-.-+.++-+.+||. +|++.....    ......+.+...++.+||. +.|.+..-.+   + .|..+|
T Consensus        90 ~~g~~d~r~~L~~~~~r~i~~~~P~-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~-v~~~vl~a~~~GvPQ~R~R~~  167 (327)
T 2c7p_A           90 QKGFEDSRGTLFFDIARIVREKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYS-FHAKVLNALDYGIPQKRERIY  167 (327)
T ss_dssp             CCGGGSTTSCHHHHHHHHHHHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBC-CEEEEEEGGGGTCSBCCEEEE
T ss_pred             cCCCcchhhHHHHHHHHHHHhccCc-EEEEeCcHHHHhccccHHHHHHHHHHHhCCCE-EEEEEEEHHHcCCCccceEEE
Confidence                 11221222334444556886 455554311    1123335577778899996 6677655443   2 455566


Q ss_pred             EEEEE
Q 037675          407 LSAVL  411 (418)
Q Consensus       407 l~Ai~  411 (418)
                      +.++.
T Consensus       168 iv~~~  172 (327)
T 2c7p_A          168 MICFR  172 (327)
T ss_dssp             EEEEB
T ss_pred             EEEEe
Confidence            66653

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=95.48  E-value=0.25  Score=49.59  Aligned_cols=143  Identities=12%  Similarity=0.015  Sum_probs=84.4

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC-CCceeecccCCCCC--------CCCccceEEecC--
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG-LFPLYLSLDHRFPF--------YDNVFDLVHASS--  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG-li~~~~~~~e~LPf--------~d~sFDlV~s~~--  334 (418)
                      .+|+|+=||.|+++..|.+.|..++ .++|+++..++..+..- -...+.+++..+..        ....+|+|+..-  
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v-~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPC   81 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVK-MAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPC   81 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEE-EEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEE-EEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCC
Confidence            3799999999999999999998776 57899988776555432 22344555555531        346799999852  


Q ss_pred             -cCcCC-----CC-hhHHHHHHHHhhccccCCcEEEEEec---cc-CchhHHHHHHHHHHHcCcEEEEEEEcccCC---C
Q 037675          335 -GLDVG-----GQ-PEKLEFLMFDFDRILRAGGLFWLDNF---YC-ANDEKKSALTRLIERFGYKKLKWVVGEKGE---T  400 (418)
Q Consensus       335 -~L~~~-----~~-~~~le~~L~Ei~RVLRPGG~~ii~~~---~~-~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d---~  400 (418)
                       -|...     .+ ...+-.-+.++.+.+||.- |++...   .. ......+.+. .++.+||....|.+..-.+   +
T Consensus        82 Q~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~-~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v~~~~vl~a~dyGvP  159 (376)
T 3g7u_A           82 QGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLF-FLAENVPGIMQEKYSGIRNKAF-NLVSGDYDILDPIKVKASDYGAP  159 (376)
T ss_dssp             CTTC-------CHHHHHHHHHHHHHHHHHCCSE-EEEEECTTTTCGGGHHHHHHHH-HHHHTTEEECCCEEEEGGGGTCS
T ss_pred             CCcccccCCCCCCchHHHHHHHHHHHHHhCCCE-EEEecchHhhccCcHHHHHHHH-HHHcCCCccCcEEEEEHhhCCCC
Confidence             23211     11 1122223344555567854 445443   11 1122334455 7889999864666655433   2


Q ss_pred             -CccceEEEEEE
Q 037675          401 -GKSEVYLSAVL  411 (418)
Q Consensus       401 -~~~e~~l~Ai~  411 (418)
                       .|..+|+.++-
T Consensus       160 Q~R~R~~iig~r  171 (376)
T 3g7u_A          160 TIRTRYFFIGVK  171 (376)
T ss_dssp             BCCEEEEEEEEE
T ss_pred             CCCcEEEEEEEe
Confidence             35556666653

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=94.98  E-value=0.043  Score=53.55  Aligned_cols=71  Identities=18%  Similarity=0.076  Sum_probs=49.8

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc--CCCceeecccCCCC-----CCCCccceEE
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR--GLFPLYLSLDHRFP-----FYDNVFDLVH  331 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR--Gli~~~~~~~e~LP-----f~d~sFDlV~  331 (418)
                      .+.+|  ..++|.+||.|+.+..|++++..++  ++|.++.+++.+++-  +-+.+++++...++     ...+.||.|+
T Consensus        19 ~~~~g--g~~VD~T~G~GGHS~~il~~~g~Vi--giD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~~~vDgIL   94 (285)
T 1wg8_A           19 AVRPG--GVYVDATLGGAGHARGILERGGRVI--GLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGIL   94 (285)
T ss_dssp             TCCTT--CEEEETTCTTSHHHHHHHHTTCEEE--EEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCC--CEEEEeCCCCcHHHHHHHHCCCEEE--EEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCCCCcCEEE
Confidence            45554  4899999999999999999865664  579999999888761  11244555555443     1225688888


Q ss_pred             ec
Q 037675          332 AS  333 (418)
Q Consensus       332 s~  333 (418)
                      +.
T Consensus        95 ~D   96 (285)
T 1wg8_A           95 AD   96 (285)
T ss_dssp             EE
T ss_pred             eC
Confidence            64

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=94.42  E-value=1  Score=43.30  Aligned_cols=142  Identities=10%  Similarity=0.065  Sum_probs=83.1

Q ss_pred             eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCC-CCccceEEec---CcCc-----
Q 037675          267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFY-DNVFDLVHAS---SGLD-----  337 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~-d~sFDlV~s~---~~L~-----  337 (418)
                      +|+|+=||.|++...|.+.|+.++ .++|+++...+.-+..--...+.+++..+... -...|+++.+   .-|+     
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v-~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~~   80 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRII-CANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGSL   80 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEE-EEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTEE
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEE-EEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCCc
Confidence            799999999999999998898877 56788776655433332224445555555321 1258999875   2222     


Q ss_pred             -CCCChh-HHHHHHHHhhccccCCcEEEEEecc----cCchhHHHHHHHHHHHcCcEEEEEEEcccCC---C-CccceEE
Q 037675          338 -VGGQPE-KLEFLMFDFDRILRAGGLFWLDNFY----CANDEKKSALTRLIERFGYKKLKWVVGEKGE---T-GKSEVYL  407 (418)
Q Consensus       338 -~~~~~~-~le~~L~Ei~RVLRPGG~~ii~~~~----~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d---~-~~~e~~l  407 (418)
                       ...++. .+-.-+.++.+.+||.- |++....    ....+.-+.+...++.+||. +.|.+..-.+   + .|..+|+
T Consensus        81 ~g~~d~R~~L~~~~~r~i~~~~Pk~-~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~-v~~~vlna~~yGvPQ~R~Rvfi  158 (331)
T 3ubt_Y           81 RGIDDPRGKLFYEYIRILKQKKPIF-FLAENVKGMMAQRHNKAVQEFIQEFDNAGYD-VHIILLNANDYGVAQDRKRVFY  158 (331)
T ss_dssp             CCTTCGGGHHHHHHHHHHHHHCCSE-EEEEECCGGGGCTTSHHHHHHHHHHHHHTEE-EEEEEEEGGGTTCSBCCEEEEE
T ss_pred             cCCCCchhHHHHHHHHHHhccCCeE-EEeeeecccccccccchhhhhhhhhccCCcE-EEEEecccccCCCCcccceEEE
Confidence             122332 22233334455568964 5565431    11223334567778899996 6677655444   2 4555666


Q ss_pred             EEEE
Q 037675          408 SAVL  411 (418)
Q Consensus       408 ~Ai~  411 (418)
                      .++-
T Consensus       159 vg~r  162 (331)
T 3ubt_Y          159 IGFR  162 (331)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            6654

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.29  E-value=0.9  Score=44.73  Aligned_cols=140  Identities=9%  Similarity=0.083  Sum_probs=82.5

Q ss_pred             CeEEEECCccChHHHHHhhcCc--EEEEeccCCCHHhHHHHHHc-CCCceeecccCCCCC---CCCccceEEecC---cC
Q 037675          266 RIGFDIGGGSGTFAARMAERNV--TVITNTLNVDAPYSEFIAAR-GLFPLYLSLDHRFPF---YDNVFDLVHASS---GL  336 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV--~vv~~alD~s~~~l~~a~eR-Gli~~~~~~~e~LPf---~d~sFDlV~s~~---~L  336 (418)
                      -+++|+-||.|++...|.+.|+  .++-.++|+++...+.-+.+ +- ..+.+++..+..   +...+|+++.+-   -+
T Consensus        11 ~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-~~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~f   89 (327)
T 3qv2_A           11 VNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-EVQVKNLDSISIKQIESLNCNTWFMSPPCQPY   89 (327)
T ss_dssp             EEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-CCBCCCTTTCCHHHHHHTCCCEEEECCCCTTC
T ss_pred             CEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-CcccCChhhcCHHHhccCCCCEEEecCCccCc
Confidence            3899999999999999988885  43302578888766654443 22 234455555532   223689999752   23


Q ss_pred             --c------CCCChhHHHHHHHHhhc-cc-----cCCcEEEEEeccc-CchhHHHHHHHHHHHcCcEEEEEEEcccCC--
Q 037675          337 --D------VGGQPEKLEFLMFDFDR-IL-----RAGGLFWLDNFYC-ANDEKKSALTRLIERFGYKKLKWVVGEKGE--  399 (418)
Q Consensus       337 --~------~~~~~~~le~~L~Ei~R-VL-----RPGG~~ii~~~~~-~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d--  399 (418)
                        .      ...+..+  .++.|+.| ++     ||. +|++..... ......+.+...++.+||. +.|.+..-.+  
T Consensus        90 s~S~ag~~~~~~d~r~--~L~~~~~r~~i~~~~~~P~-~~~lENV~gl~~~~~~~~i~~~l~~~GY~-v~~~vl~a~~yG  165 (327)
T 3qv2_A           90 NNSIMSKHKDINDPRA--KSVLHLYRDILPYLINKPK-HIFIENVPLFKESLVFKEIYNILIKNQYY-IKDIICSPIDIG  165 (327)
T ss_dssp             SHHHHTTTCTTTCGGG--HHHHHHHHTTGGGCSSCCS-EEEEEECGGGGGSHHHHHHHHHHHHTTCE-EEEEEECGGGGT
T ss_pred             ccccCCCCCCCccccc--hhHHHHHHHHHHHhccCCC-EEEEEchhhhcChHHHHHHHHHHHhCCCE-EEEEEEeHHHcC
Confidence              1      1123322  56777777 54     564 444554321 1123345677888999996 6677655443  


Q ss_pred             -C-CccceEEEEE
Q 037675          400 -T-GKSEVYLSAV  410 (418)
Q Consensus       400 -~-~~~e~~l~Ai  410 (418)
                       + .|...|+.+.
T Consensus       166 vPQ~R~R~fivg~  178 (327)
T 3qv2_A          166 IPNSRTRYYVMAR  178 (327)
T ss_dssp             CSBCCCEEEEEEE
T ss_pred             CCccceEEEEEEE
Confidence             3 3445555554

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=94.04  E-value=0.012  Score=72.33  Aligned_cols=97  Identities=16%  Similarity=0.150  Sum_probs=40.5

Q ss_pred             CeEEEECCccChHHHHHhhc----Cc-EEEEeccCCCHHhHHHHHHc--CCCceeec--ccCC-CCCCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAER----NV-TVITNTLNVDAPYSEFIAAR--GLFPLYLS--LDHR-FPFYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~----gV-~vv~~alD~s~~~l~~a~eR--Gli~~~~~--~~e~-LPf~d~sFDlV~s~~~  335 (418)
                      .+||+||.|+|..+..+.+.    .. ..--.-.|+++.+.+.++++  .+ ....+  +.+. -+|...+||+|+++.+
T Consensus      1242 ~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~-di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A         1242 MKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL-HVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp             EEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH-TEEEECCCSSCCCC-----CCEEEEECC
T ss_pred             ceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc-ccccccccccccccCCCCceeEEEEccc
Confidence            48999999999765443321    11 11101147776555444433  11 11111  1112 2456678999999999


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +|-..   ++...|.++.+.|||||++++..
T Consensus      1321 l~~t~---~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1321 LATLG---DPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             -----------------------CCEEEEEE
T ss_pred             ccccc---cHHHHHHHHHHhcCCCcEEEEEe
Confidence            97553   34488999999999999998764

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=93.35  E-value=1.9  Score=42.36  Aligned_cols=140  Identities=9%  Similarity=0.094  Sum_probs=81.9

Q ss_pred             eEEEECCccChHHHHHhhcCc--EEEEeccCCCHHhHHHHHHc-CCCceeecccCCCC---CCCCccceEEec---CcCc
Q 037675          267 IGFDIGGGSGTFAARMAERNV--TVITNTLNVDAPYSEFIAAR-GLFPLYLSLDHRFP---FYDNVFDLVHAS---SGLD  337 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~gV--~vv~~alD~s~~~l~~a~eR-Gli~~~~~~~e~LP---f~d~sFDlV~s~---~~L~  337 (418)
                      +++|+=||.|++...|.+.|+  .++ .++|+++...+.-+.+ +-...+.+++..+.   ++...+|+++.+   .-+.
T Consensus         5 ~~idLFaG~GG~~~G~~~aG~~~~~v-~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS   83 (333)
T 4h0n_A            5 KILELYSGIGGMHCAWKESGLDGEIV-AAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT   83 (333)
T ss_dssp             EEEEETCTTTHHHHHHHHHTCSEEEE-EEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred             EEEEECcCccHHHHHHHHcCCCceEE-EEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence            799999999999999988885  555 5789988776654443 22244555555553   223368999975   2222


Q ss_pred             C------CCChhHHHHHHHHhhcc---cc-CCcEEEEEeccc-CchhHHHHHHHHHHHcCcEEEEEEEcccCC---C-Cc
Q 037675          338 V------GGQPEKLEFLMFDFDRI---LR-AGGLFWLDNFYC-ANDEKKSALTRLIERFGYKKLKWVVGEKGE---T-GK  402 (418)
Q Consensus       338 ~------~~~~~~le~~L~Ei~RV---LR-PGG~~ii~~~~~-~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d---~-~~  402 (418)
                      .      ..+..+  .++.|+.|+   +| |. +|++..... ......+.+...++.+||. +.|.+..-.+   + .|
T Consensus        84 ~ag~~~~~~d~r~--~L~~~~~r~i~~~~~P~-~~vlENV~gl~~~~~~~~i~~~l~~~GY~-v~~~vl~a~~~GvPQ~R  159 (333)
T 4h0n_A           84 RNGKYLDDNDPRT--NSFLYLIGILDQLDNVD-YILMENVKGFENSTVRNLFIDKLKECNFI-YQEFLLCPSTVGVPNSR  159 (333)
T ss_dssp             ETTEECCTTCTTS--CCHHHHHHHGGGCTTCC-EEEEEECTTGGGSHHHHHHHHHHHHTTEE-EEEEEECTTTTTCSCCC
T ss_pred             hhhhccCCcCccc--ccHHHHHHHHHHhcCCC-EEEEecchhhhhhhHHHHHHHHHHhCCCe-EEEEEecHHHcCCCccc
Confidence            1      112211  344455554   44 74 344554321 1123345678888999996 5666655444   2 35


Q ss_pred             cceEEEEEE
Q 037675          403 SEVYLSAVL  411 (418)
Q Consensus       403 ~e~~l~Ai~  411 (418)
                      ...|+.++-
T Consensus       160 ~R~fiva~r  168 (333)
T 4h0n_A          160 LRYYCTARR  168 (333)
T ss_dssp             CEEEEEEEE
T ss_pred             eEEEEEEEe
Confidence            555666553

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.34  E-value=0.21  Score=47.94  Aligned_cols=81  Identities=16%  Similarity=0.152  Sum_probs=47.5

Q ss_pred             ceeecccCC-CC-CCCCccceEEecCcCc---CCCC--------------hhHHHHHHHHhhccccCCcEEEEEecccC-
Q 037675          311 PLYLSLDHR-FP-FYDNVFDLVHASSGLD---VGGQ--------------PEKLEFLMFDFDRILRAGGLFWLDNFYCA-  370 (418)
Q Consensus       311 ~~~~~~~e~-LP-f~d~sFDlV~s~~~L~---~~~~--------------~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-  370 (418)
                      .++.+++.. ++ +++++||+|+++==..   ....              ...+..++.|+.|+|||||.+++...... 
T Consensus        23 ~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~~  102 (297)
T 2zig_A           23 RLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVAV  102 (297)
T ss_dssp             EEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEEE
T ss_pred             EEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCcc
Confidence            345555433 32 4678999999962111   1100              01235678899999999999977643111 


Q ss_pred             -----ch----hHHHHHHHHHHHcCcEEEE
Q 037675          371 -----ND----EKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       371 -----~e----e~~~~~~~l~~~~Gfk~l~  391 (418)
                           +.    .....+..+++..||....
T Consensus       103 ~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~  132 (297)
T 2zig_A          103 ARRRFGRHLVFPLHADIQVRCRKLGFDNLN  132 (297)
T ss_dssp             ECC----EEEECHHHHHHHHHHHTTCEEEE
T ss_pred             ccccCCcccccccHHHHHHHHHHcCCeeec
Confidence                 10    1224466778889997654

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=93.30  E-value=0.14  Score=50.37  Aligned_cols=95  Identities=15%  Similarity=0.086  Sum_probs=62.3

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecccCC----C-CCCCCccceE
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLDHR----F-PFYDNVFDLV  330 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~----L-Pf~d~sFDlV  330 (418)
                      .+.+|  .+||-+|+|. |.++..+++. |. .++  ++|.++..++.+++.|....+....+.    + ...++.||+|
T Consensus       187 ~~~~g--~~VlV~GaG~vG~~a~qlak~~Ga~~Vi--~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~v  262 (371)
T 1f8f_A          187 KVTPA--SSFVTWGAGAVGLSALLAAKVCGASIII--AVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFA  262 (371)
T ss_dssp             CCCTT--CEEEEESCSHHHHHHHHHHHHHTCSEEE--EEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred             CCCCC--CEEEEECCCHHHHHHHHHHHHcCCCeEE--EECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEE
Confidence            34555  4899999986 7788888774 76 443  468888889999888863232211111    1 1112369999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +-...     .    ...+.+..+.|||||.+++..
T Consensus       263 id~~g-----~----~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          263 LESTG-----S----PEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             EECSC-----C----HHHHHHHHHTEEEEEEEEECC
T ss_pred             EECCC-----C----HHHHHHHHHHHhcCCEEEEeC
Confidence            85322     1    156778999999999997754

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=92.80  E-value=0.16  Score=47.93  Aligned_cols=52  Identities=21%  Similarity=0.185  Sum_probs=40.0

Q ss_pred             HHHHHHHcc--CCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc
Q 037675          252 FLIDDVLAL--GSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR  307 (418)
Q Consensus       252 ~~I~~lL~l--~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR  307 (418)
                      .++..+|..  .+|  ..|||..||+|+.+....+.|-.+++  +|+++..++.+.+|
T Consensus       200 ~l~~~~i~~~~~~~--~~vlD~f~GsGtt~~~a~~~gr~~ig--~e~~~~~~~~~~~r  253 (260)
T 1g60_A          200 DLIERIIRASSNPN--DLVLDCFMGSGTTAIVAKKLGRNFIG--CDMNAEYVNQANFV  253 (260)
T ss_dssp             HHHHHHHHHHCCTT--CEEEESSCTTCHHHHHHHHTTCEEEE--EESCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCC--CEEEECCCCCCHHHHHHHHcCCeEEE--EeCCHHHHHHHHHH
Confidence            355555543  344  48999999999999998888877754  79999988888776

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=92.48  E-value=0.38  Score=46.97  Aligned_cols=70  Identities=20%  Similarity=0.190  Sum_probs=43.8

Q ss_pred             CCCCccceEEec--CcCc---CCCC------hhHHHHHHHHhhccccCCcEEEEEeccc--Cch-----hHHHHHHHHHH
Q 037675          322 FYDNVFDLVHAS--SGLD---VGGQ------PEKLEFLMFDFDRILRAGGLFWLDNFYC--AND-----EKKSALTRLIE  383 (418)
Q Consensus       322 f~d~sFDlV~s~--~~L~---~~~~------~~~le~~L~Ei~RVLRPGG~~ii~~~~~--~~e-----e~~~~~~~l~~  383 (418)
                      +++++||+|++.  .-..   .+..      ...+...+.++.|+|||||.+++..-..  .+.     .....+..+++
T Consensus        29 l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~~~~~~~~~i~~~~~  108 (323)
T 1boo_A           29 FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIYNFRVLIRMID  108 (323)
T ss_dssp             SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEEECCHHHHHHHHHHH
T ss_pred             CCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcccccchHHHHHHHHH
Confidence            458899999996  2111   1111      1246788999999999999998854322  110     11233555678


Q ss_pred             HcCcEEEE
Q 037675          384 RFGYKKLK  391 (418)
Q Consensus       384 ~~Gfk~l~  391 (418)
                      ..||..+.
T Consensus       109 ~~Gf~~~~  116 (323)
T 1boo_A          109 EVGFFLAE  116 (323)
T ss_dssp             TTCCEEEE
T ss_pred             hCCCEEEE
Confidence            89997654

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=92.02  E-value=0.25  Score=49.11  Aligned_cols=101  Identities=17%  Similarity=0.175  Sum_probs=64.0

Q ss_pred             HccCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecccCCC------C-CCCCcc
Q 037675          258 LALGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF------P-FYDNVF  327 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L------P-f~d~sF  327 (418)
                      ..+.+|+  +||-+|+|. |.++..+++. |. .++  ++|.++..++.+++.|. ..+....+.+      . ...+.|
T Consensus       181 ~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi--~~~~~~~~~~~a~~lGa-~~i~~~~~~~~~~~~~~~~~g~g~  255 (398)
T 2dph_A          181 AGVKPGS--HVYIAGAGPVGRCAAAGARLLGAACVI--VGDQNPERLKLLSDAGF-ETIDLRNSAPLRDQIDQILGKPEV  255 (398)
T ss_dssp             TTCCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEE--EEESCHHHHHHHHTTTC-EEEETTSSSCHHHHHHHHHSSSCE
T ss_pred             cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEE--EEcCCHHHHHHHHHcCC-cEEcCCCcchHHHHHHHHhCCCCC
Confidence            3456664  899999976 8888888874 76 554  46888888888888776 3322111111      0 122369


Q ss_pred             ceEEecCcCcCC--------CChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          328 DLVHASSGLDVG--------GQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       328 DlV~s~~~L~~~--------~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      |+|+-...-...        .++.   ..+.+..+.|||||++++..
T Consensus       256 Dvvid~~g~~~~~~~~~~~~~~~~---~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          256 DCGVDAVGFEAHGLGDEANTETPN---GALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             EEEEECSCTTCBCSGGGTTSBCTT---HHHHHHHHHEEEEEEEECCS
T ss_pred             CEEEECCCCccccccccccccccH---HHHHHHHHHHhcCCEEEEec
Confidence            999864322110        0011   35778899999999987644

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=91.65  E-value=0.28  Score=47.76  Aligned_cols=92  Identities=15%  Similarity=0.173  Sum_probs=61.5

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcC
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGL  336 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L  336 (418)
                      .+.+|  .+||-+|+|. |.++..+++. |..++  +++.++...+.+++.|...++ ...+.+   .+.+|+|+-...-
T Consensus       173 ~~~~g--~~VlV~GaG~vG~~a~qla~~~Ga~Vi--~~~~~~~~~~~~~~lGa~~v~-~~~~~~---~~~~D~vid~~g~  244 (348)
T 3two_A          173 KVTKG--TKVGVAGFGGLGSMAVKYAVAMGAEVS--VFARNEHKKQDALSMGVKHFY-TDPKQC---KEELDFIISTIPT  244 (348)
T ss_dssp             TCCTT--CEEEEESCSHHHHHHHHHHHHTTCEEE--EECSSSTTHHHHHHTTCSEEE-SSGGGC---CSCEEEEEECCCS
T ss_pred             CCCCC--CEEEEECCcHHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHhcCCCeec-CCHHHH---hcCCCEEEECCCc
Confidence            45566  4899999875 7777777764 77765  457777788888888864444 222222   2279999863221


Q ss_pred             cCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                           .    ..+.+..+.|||||.+++...
T Consensus       245 -----~----~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          245 -----H----YDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             -----C----CCHHHHHTTEEEEEEEEECCC
T ss_pred             -----H----HHHHHHHHHHhcCCEEEEECC
Confidence                 1    235578899999999977543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=91.60  E-value=0.48  Score=44.53  Aligned_cols=65  Identities=9%  Similarity=-0.070  Sum_probs=39.9

Q ss_pred             CCCccceEEec--CcCc--CCCC---h----hHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          323 YDNVFDLVHAS--SGLD--VGGQ---P----EKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       323 ~d~sFDlV~s~--~~L~--~~~~---~----~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      ++++||+|++.  .-..  .+..   .    .-+...|.++.|+|||||.+++...    +.....+..++...||....
T Consensus        20 ~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~----d~~~~~~~~~~~~~gf~~~~   95 (260)
T 1g60_A           20 ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT----PFNCAFICQYLVSKGMIFQN   95 (260)
T ss_dssp             CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC----HHHHHHHHHHHHHTTCEEEE
T ss_pred             cccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcC----cHHHHHHHHHHHhhccceeE
Confidence            46788888885  1111  0110   0    2456788999999999999987631    11123355567778887554

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=91.03  E-value=0.49  Score=46.04  Aligned_cols=96  Identities=13%  Similarity=0.093  Sum_probs=62.9

Q ss_pred             HccCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecccCCC-----C-CCCCccc
Q 037675          258 LALGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF-----P-FYDNVFD  328 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L-----P-f~d~sFD  328 (418)
                      ..+.+|+  +||=+|+|. |.++..+++. |. .++  ++|.++..++.+++.|...++....+.+     . ...+.||
T Consensus       162 ~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~~Vi--~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D  237 (352)
T 3fpc_A          162 ANIKLGD--TVCVIGIGPVGLMSVAGANHLGAGRIF--AVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVD  237 (352)
T ss_dssp             TTCCTTC--CEEEECCSHHHHHHHHHHHTTTCSSEE--EECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEE
T ss_pred             cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEE--EECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCC
Confidence            3466664  799899875 7778888775 66 454  4688888889999988733332111111     0 2234699


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +|+-...     .+    ..+.+..+.|+|||.+++..
T Consensus       238 ~v~d~~g-----~~----~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          238 KVVIAGG-----DV----HTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             EEEECSS-----CT----THHHHHHHHEEEEEEEEECC
T ss_pred             EEEECCC-----Ch----HHHHHHHHHHhcCCEEEEec
Confidence            9986321     11    45678889999999997654

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=91.01  E-value=0.41  Score=46.74  Aligned_cols=95  Identities=14%  Similarity=0.067  Sum_probs=61.7

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecc-------cCCC-CCCCCcc
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSL-------DHRF-PFYDNVF  327 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~-------~e~L-Pf~d~sF  327 (418)
                      .+.+|+  +||-+|+|. |.++..+++. |. .++  ++|.++..++.+++.|....+...       .+.+ ....+.|
T Consensus       168 ~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi--~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~  243 (356)
T 1pl8_A          168 GVTLGH--KVLVCGAGPIGMVTLLVAKAMGAAQVV--VTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKP  243 (356)
T ss_dssp             TCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEE--EEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred             CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEE--EECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCC
Confidence            456664  899999875 7788888764 76 554  468888888889888863222111       0011 0001568


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      |+|+-...     ..    ..+.+..++|||||.+++..
T Consensus       244 D~vid~~g-----~~----~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          244 EVTIECTG-----AE----ASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             SEEEECSC-----CH----HHHHHHHHHSCTTCEEEECS
T ss_pred             CEEEECCC-----Ch----HHHHHHHHHhcCCCEEEEEe
Confidence            99986321     11    45678889999999997754

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=90.95  E-value=0.64  Score=45.82  Aligned_cols=98  Identities=18%  Similarity=0.191  Sum_probs=65.0

Q ss_pred             HHccCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecccCC--------CCCCCC
Q 037675          257 VLALGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLDHR--------FPFYDN  325 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~--------LPf~d~  325 (418)
                      ...+.+|+  +||=+|+|. |.++..+++. |. .++  ++|.++...+.+++.|....+....+.        ....++
T Consensus       177 ~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi--~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~g  252 (370)
T 4ej6_A          177 LSGIKAGS--TVAILGGGVIGLLTVQLARLAGATTVI--LSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPG  252 (370)
T ss_dssp             HHTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEE--EECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTT
T ss_pred             hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEE--EECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCC
Confidence            34566664  899899875 7777777764 76 554  468888888999988873333211111        112234


Q ss_pred             ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .||+|+-..     ...    ..+.+..+.|||||.+++...
T Consensus       253 g~Dvvid~~-----G~~----~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          253 GVDVVIECA-----GVA----ETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             CEEEEEECS-----CCH----HHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCEEEECC-----CCH----HHHHHHHHHhccCCEEEEEec
Confidence            799998632     111    567789999999999987653

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=90.92  E-value=1.4  Score=46.14  Aligned_cols=110  Identities=16%  Similarity=0.159  Sum_probs=61.6

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhh----cC-----------cEEEEeccCCCHHhHHHHHH----cCCC--ce
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAE----RN-----------VTVITNTLNVDAPYSEFIAA----RGLF--PL  312 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~----~g-----------V~vv~~alD~s~~~l~~a~e----RGli--~~  312 (418)
                      |-+++....|  .+|+|-.||+|+|.....+    .+           ...  .+.|+++.+...|+-    +|+-  .+
T Consensus       209 mv~l~~p~~~--~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i--~G~E~~~~~~~la~mNl~lhg~~~~~I  284 (530)
T 3ufb_A          209 MVEVMDPQLG--ESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSI--FGGEAKSLPYLLVQMNLLLHGLEYPRI  284 (530)
T ss_dssp             HHHHHCCCTT--CCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCE--EEECCSHHHHHHHHHHHHHHTCSCCEE
T ss_pred             HHHhhccCCC--CEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhh--hhhhccHHHHHHHHHHHHhcCCccccc
Confidence            4444444444  4899999999999754433    11           223  346888877766543    4542  23


Q ss_pred             eecccCCCCCC----CCccceEEecCcCc--CCC-----------ChhHHHHHHHHhhcccc-------CCcEEEEEec
Q 037675          313 YLSLDHRFPFY----DNVFDLVHASSGLD--VGG-----------QPEKLEFLMFDFDRILR-------AGGLFWLDNF  367 (418)
Q Consensus       313 ~~~~~e~LPf~----d~sFDlV~s~~~L~--~~~-----------~~~~le~~L~Ei~RVLR-------PGG~~ii~~~  367 (418)
                      ..++.-..|+.    ...||+|+++==+.  ++.           ....--.++.-+.+.||       |||++.+.-+
T Consensus       285 ~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP  363 (530)
T 3ufb_A          285 DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP  363 (530)
T ss_dssp             ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred             cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence            34554444432    35799999962221  110           00111134556666666       7999866554

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=90.87  E-value=0.62  Score=46.14  Aligned_cols=100  Identities=17%  Similarity=0.222  Sum_probs=63.5

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecccCC-----CC--CCCCccc
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLDHR-----FP--FYDNVFD  328 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~-----LP--f~d~sFD  328 (418)
                      .+.+|  .+||-+|+|. |.++..+++. |. .++  ++|.++..++.+++.|. ..+....+.     +.  ...+.+|
T Consensus       182 ~~~~g--~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi--~~~~~~~~~~~a~~lGa-~~i~~~~~~~~~~~v~~~t~g~g~D  256 (398)
T 1kol_A          182 GVGPG--STVYVAGAGPVGLAAAASARLLGAAVVI--VGDLNPARLAHAKAQGF-EIADLSLDTPLHEQIAALLGEPEVD  256 (398)
T ss_dssp             TCCTT--CEEEEECCSHHHHHHHHHHHHTTCSEEE--EEESCHHHHHHHHHTTC-EEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred             CCCCC--CEEEEECCcHHHHHHHHHHHHCCCCeEE--EEcCCHHHHHHHHHcCC-cEEccCCcchHHHHHHHHhCCCCCC
Confidence            45566  4899999876 7888888874 76 443  46888999999988887 332211111     10  1224699


Q ss_pred             eEEecCcCc---------CCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          329 LVHASSGLD---------VGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       329 lV~s~~~L~---------~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +|+-...-.         +..++.   ..+.+..++|||||.+++..
T Consensus       257 vvid~~G~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          257 CAVDAVGFEARGHGHEGAKHEAPA---TVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             EEEECCCTTCBCSSTTGGGSBCTT---HHHHHHHHHEEEEEEEEECS
T ss_pred             EEEECCCCcccccccccccccchH---HHHHHHHHHHhcCCEEEEec
Confidence            998643211         111111   46778899999999997654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=90.34  E-value=0.5  Score=41.76  Aligned_cols=94  Identities=18%  Similarity=0.065  Sum_probs=57.4

Q ss_pred             ccCCCCCCeEEEECC--ccChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeeccc-CC----C-C-CCCCccc
Q 037675          259 ALGSGGIRIGFDIGG--GSGTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLD-HR----F-P-FYDNVFD  328 (418)
Q Consensus       259 ~l~~g~~r~VLDvGC--GtG~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~-e~----L-P-f~d~sFD  328 (418)
                      .+.+|  ++||.+|+  |.|..+..++. .|..++  +++.+++..+.+++.|.. ...+.. +.    + . ...+.+|
T Consensus        35 ~~~~g--~~vlV~Ga~ggiG~~~~~~~~~~G~~V~--~~~~~~~~~~~~~~~g~~-~~~d~~~~~~~~~~~~~~~~~~~D  109 (198)
T 1pqw_A           35 RLSPG--ERVLIHSATGGVGMAAVSIAKMIGARIY--TTAGSDAKREMLSRLGVE-YVGDSRSVDFADEILELTDGYGVD  109 (198)
T ss_dssp             CCCTT--CEEEETTTTSHHHHHHHHHHHHHTCEEE--EEESSHHHHHHHHTTCCS-EEEETTCSTHHHHHHHHTTTCCEE
T ss_pred             CCCCC--CEEEEeeCCChHHHHHHHHHHHcCCEEE--EEeCCHHHHHHHHHcCCC-EEeeCCcHHHHHHHHHHhCCCCCe
Confidence            34555  58999995  55766665554 477665  356777777777666642 222211 10    0 0 1224699


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +|+....     .     ..+.+..+.|||||++++...
T Consensus       110 ~vi~~~g-----~-----~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          110 VVLNSLA-----G-----EAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             EEEECCC-----T-----HHHHHHHHTEEEEEEEEECSC
T ss_pred             EEEECCc-----h-----HHHHHHHHHhccCCEEEEEcC
Confidence            9986431     1     456788999999999977543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=90.09  E-value=1.5  Score=43.06  Aligned_cols=61  Identities=13%  Similarity=0.109  Sum_probs=41.0

Q ss_pred             CCCccceEEecCcCcCCCChhH-HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          323 YDNVFDLVHASSGLDVGGQPEK-LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       323 ~d~sFDlV~s~~~L~~~~~~~~-le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      .+..||+++-.. |.+-.+++. -+.++.+|.|.++|||+|.   .|+....    ..+.+..+||+.-+
T Consensus       183 ~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~la---TYtaag~----VRR~L~~aGF~V~k  244 (308)
T 3vyw_A          183 ENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWV---SYSSSLS----VRKSLLTLGFKVGS  244 (308)
T ss_dssp             CSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEE---ESCCCHH----HHHHHHHTTCEEEE
T ss_pred             cccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEE---EEeCcHH----HHHHHHHCCCEEEe
Confidence            345799999754 554433321 1379999999999999873   2443333    56678999998543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=90.06  E-value=1.1  Score=44.76  Aligned_cols=96  Identities=11%  Similarity=0.028  Sum_probs=63.3

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCC--H-HhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCCh
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVD--A-PYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQP  342 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s--~-~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~  342 (418)
                      .+||.+|-+.|.++..|+..+++.++   |.-  . ...+.....|+.+........+.-....||+|+.    ..-...
T Consensus        40 ~~~~~~~d~~gal~~~~~~~~~~~~~---ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~lpk~~  112 (375)
T 4dcm_A           40 GPVLILNDAFGALSCALAEHKPYSIG---DSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLI----KVPKTL  112 (375)
T ss_dssp             SCEEEECCSSSHHHHHTGGGCCEEEE---SCHHHHHHHHHHHHHTTCCGGGSEEEETTSCCCSSCSEEEE----ECCSCH
T ss_pred             CCEEEECCCCCHHHHhhccCCceEEE---hHHHHHHHHHHHHHHcCCCccceEecccccccccCCCEEEE----EcCCCH
Confidence            47999999999999999888887763   531  1 2223344456633211111122234567999885    333456


Q ss_pred             hHHHHHHHHhhccccCCcEEEEEecc
Q 037675          343 EKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       343 ~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      ..+...|.++...|+||+.+++.+..
T Consensus       113 ~~l~~~L~~l~~~l~~~~~i~~~g~~  138 (375)
T 4dcm_A          113 ALLEQQLRALRKVVTSDTRIIAGAKA  138 (375)
T ss_dssp             HHHHHHHHHHHTTCCTTSEEEEEEEG
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEEecc
Confidence            67788999999999999999776553

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=89.67  E-value=1.1  Score=43.41  Aligned_cols=96  Identities=18%  Similarity=0.103  Sum_probs=61.8

Q ss_pred             HccCCCCCCeEEEECCcc-ChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeeccc-CCCC------CC---CC
Q 037675          258 LALGSGGIRIGFDIGGGS-GTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLD-HRFP------FY---DN  325 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGt-G~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~-e~LP------f~---d~  325 (418)
                      ..+.+|+  +||-+|+|. |.++..+++ .|..++  ++|.++..++.+++.|....+.... +.+.      +.   .+
T Consensus       164 ~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~Vi--~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~  239 (352)
T 1e3j_A          164 AGVQLGT--TVLVIGAGPIGLVSVLAAKAYGAFVV--CTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGD  239 (352)
T ss_dssp             HTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEE--EEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred             cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCEEE--EEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCC
Confidence            3456664  899999875 777777776 477643  4688888888888888632222110 1110      11   24


Q ss_pred             ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      .+|+|+-...     . .   ..+.+..+.|||||.+++..
T Consensus       240 g~D~vid~~g-----~-~---~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          240 LPNVTIDCSG-----N-E---KCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             CCSEEEECSC-----C-H---HHHHHHHHHSCTTCEEEECS
T ss_pred             CCCEEEECCC-----C-H---HHHHHHHHHHhcCCEEEEEe
Confidence            6899986321     1 1   45678889999999997754

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=88.66  E-value=0.54  Score=46.39  Aligned_cols=92  Identities=20%  Similarity=0.227  Sum_probs=60.2

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeec----ccCCCCCCCCccceEEe
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLS----LDHRFPFYDNVFDLVHA  332 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~----~~e~LPf~d~sFDlV~s  332 (418)
                      .+.+|  .+||-+|+|. |.++..+++. |..++  +++.++..++.+++-|...++..    ..+++.   +.+|+|+-
T Consensus       191 ~~~~g--~~VlV~GaG~vG~~aiqlak~~Ga~Vi--~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~---~g~Dvvid  263 (369)
T 1uuf_A          191 QAGPG--KKVGVVGIGGLGHMGIKLAHAMGAHVV--AFTTSEAKREAAKALGADEVVNSRNADEMAAHL---KSFDFILN  263 (369)
T ss_dssp             TCCTT--CEEEEECCSHHHHHHHHHHHHTTCEEE--EEESSGGGHHHHHHHTCSEEEETTCHHHHHTTT---TCEEEEEE
T ss_pred             CCCCC--CEEEEECCCHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHcCCcEEeccccHHHHHHhh---cCCCEEEE
Confidence            45556  4899999975 7777777764 77754  46778888888888776333221    122222   57999986


Q ss_pred             cCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          333 SSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       333 ~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      ...-.         ..+.+..+.|||||.+++..
T Consensus       264 ~~g~~---------~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          264 TVAAP---------HNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             CCSSC---------CCHHHHHTTEEEEEEEEECC
T ss_pred             CCCCH---------HHHHHHHHHhccCCEEEEec
Confidence            43211         23457789999999987643

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=88.25  E-value=1.8  Score=42.66  Aligned_cols=98  Identities=10%  Similarity=0.045  Sum_probs=60.7

Q ss_pred             CCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHH----HHHcC-----------------------CCceee
Q 037675          264 GIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEF----IAARG-----------------------LFPLYL  314 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~----a~eRG-----------------------li~~~~  314 (418)
                      ..+.|+.+|||..+.+.+|...  ++.++  .+|. +..++.    ..+.+                       -...+-
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~--EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~  173 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYV--DIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA  173 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEE--EEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEE--ECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEe
Confidence            3578999999999999999874  45543  4665 555542    22221                       001111


Q ss_pred             c------c----cCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          315 S------L----DHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       315 ~------~----~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .      |    ....+ ..+...++++-.++.... ++....++..+.+.. |+|.+++-+.
T Consensus       174 ~DL~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL~-~~~~~~ll~~ia~~~-~~~~~v~~e~  233 (334)
T 1rjd_A          174 CDLNDITETTRLLDVCT-KREIPTIVISECLLCYMH-NNESQLLINTIMSKF-SHGLWISYDP  233 (334)
T ss_dssp             CCTTCHHHHHHHHHTTC-CTTSCEEEEEESCGGGSC-HHHHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred             cCCCCcHHHHHHHHhcC-CCCCCEEEEEcchhhCCC-HHHHHHHHHHHHhhC-CCcEEEEEec
Confidence            1      2    12333 345678888888888775 455677777777766 7887765443

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=88.19  E-value=0.57  Score=45.26  Aligned_cols=95  Identities=16%  Similarity=0.059  Sum_probs=62.1

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC----CCCCccceEEe
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP----FYDNVFDLVHA  332 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP----f~d~sFDlV~s  332 (418)
                      .+.+|  .+||-+|+|. |.++..+++. |..++  ++|.++...+.+++.|....+....+.+.    -..+.+|.|+-
T Consensus       163 ~~~~g--~~VlV~GaG~vG~~a~qla~~~Ga~Vi--~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid  238 (340)
T 3s2e_A          163 DTRPG--QWVVISGIGGLGHVAVQYARAMGLRVA--AVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLV  238 (340)
T ss_dssp             TCCTT--SEEEEECCSTTHHHHHHHHHHTTCEEE--EEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEE
T ss_pred             CCCCC--CEEEEECCCHHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEE
Confidence            35555  4899999975 8888888774 87764  46888888999988886333221111110    01125888875


Q ss_pred             cCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          333 SSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       333 ~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      ...     .    ...+.+..+.|||||.+++..
T Consensus       239 ~~g-----~----~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          239 TAV-----S----PKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             SSC-----C----HHHHHHHHHHEEEEEEEEECS
T ss_pred             eCC-----C----HHHHHHHHHHhccCCEEEEeC
Confidence            321     1    156778999999999997764

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=88.17  E-value=2.6  Score=41.29  Aligned_cols=86  Identities=16%  Similarity=0.106  Sum_probs=51.5

Q ss_pred             CccceEEecCcCcCCCCh--------hHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcc
Q 037675          325 NVFDLVHASSGLDVGGQP--------EKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGE  396 (418)
Q Consensus       325 ~sFDlV~s~~~L~~~~~~--------~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~  396 (418)
                      +.+|+|++...-..-...        .-+..++.-..++|+|||.|++-.+...+...++ +...+++. |+.++-..-+
T Consensus       205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~-lv~~LaR~-F~~Vr~vKP~  282 (320)
T 2hwk_A          205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASES-IIGAIARQ-FKFSRVCKPK  282 (320)
T ss_dssp             CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHH-HHHHHHTT-EEEEEEECCT
T ss_pred             CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHH-HHHHHHHh-cceeeeeCCC
Confidence            669999996443322222        2244567778899999999988766544223233 44444442 8877643322


Q ss_pred             cCCCCccceEEEEEEEc
Q 037675          397 KGETGKSEVYLSAVLQK  413 (418)
Q Consensus       397 k~d~~~~e~~l~Ai~qK  413 (418)
                      -.. ...|+|+.|..-|
T Consensus       283 ASR-~StEvf~La~gf~  298 (320)
T 2hwk_A          283 SSL-EETEVLFVFIGYD  298 (320)
T ss_dssp             TCC-STTCEEEEEEEEC
T ss_pred             Ccc-ccceEEEEEEeec
Confidence            122 2569999887654

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=87.79  E-value=1.3  Score=43.19  Aligned_cols=45  Identities=11%  Similarity=-0.009  Sum_probs=30.3

Q ss_pred             CCCccceEEec--CcCc--CCC----ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          323 YDNVFDLVHAS--SGLD--VGG----QPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       323 ~d~sFDlV~s~--~~L~--~~~----~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ++++||+|++.  +-..  .|.    -...+...|.++.|+|||||.+++...
T Consensus        55 ~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~  107 (319)
T 1eg2_A           55 PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG  107 (319)
T ss_dssp             CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence            47789999885  1111  111    012456788999999999999988654

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=87.03  E-value=0.51  Score=45.10  Aligned_cols=88  Identities=16%  Similarity=0.120  Sum_probs=57.1

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcC
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGL  336 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L  336 (418)
                      .+.+|  .+||=+|+|. |.++..+++. |..++.  ++ ++...+.+++.|....+. +.+++   .+.+|+|+-.-.-
T Consensus       139 ~~~~g--~~VlV~GaG~vG~~a~qlak~~Ga~Vi~--~~-~~~~~~~~~~lGa~~v~~-d~~~v---~~g~Dvv~d~~g~  209 (315)
T 3goh_A          139 PLTKQ--REVLIVGFGAVNNLLTQMLNNAGYVVDL--VS-ASLSQALAAKRGVRHLYR-EPSQV---TQKYFAIFDAVNS  209 (315)
T ss_dssp             CCCSC--CEEEEECCSHHHHHHHHHHHHHTCEEEE--EC-SSCCHHHHHHHTEEEEES-SGGGC---CSCEEEEECC---
T ss_pred             CCCCC--CEEEEECCCHHHHHHHHHHHHcCCEEEE--EE-ChhhHHHHHHcCCCEEEc-CHHHh---CCCccEEEECCCc
Confidence            34555  4899999964 7788888775 877653  46 777778888877633332 24444   5679999853211


Q ss_pred             cCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          337 DVGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                                ..+.+..+.|||||.++..
T Consensus       210 ----------~~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          210 ----------QNAAALVPSLKANGHIICI  228 (315)
T ss_dssp             --------------TTGGGEEEEEEEEEE
T ss_pred             ----------hhHHHHHHHhcCCCEEEEE
Confidence                      1225678999999998765

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=86.83  E-value=0.75  Score=44.48  Aligned_cols=95  Identities=16%  Similarity=0.043  Sum_probs=58.2

Q ss_pred             ccCCCCCCeEEEECCc--cChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC------CCCCccce
Q 037675          259 ALGSGGIRIGFDIGGG--SGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP------FYDNVFDL  329 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCG--tG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP------f~d~sFDl  329 (418)
                      .+.+|  .+||-+|+|  .|..+..+++. |..++.  ++.++..++.+++.|....+....+.+.      ...+.+|+
T Consensus       141 ~~~~g--~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~--~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dv  216 (340)
T 3gms_A          141 NLQRN--DVLLVNACGSAIGHLFAQLSQILNFRLIA--VTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADA  216 (340)
T ss_dssp             CCCTT--CEEEESSTTSHHHHHHHHHHHHHTCEEEE--EESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred             ccCCC--CEEEEeCCccHHHHHHHHHHHHcCCEEEE--EeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcE
Confidence            35555  489999987  67777777764 877653  5666667777877776322221111110      12347999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      |+....-          ..+.+..+.|||||.+++...
T Consensus       217 vid~~g~----------~~~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          217 AIDSIGG----------PDGNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             EEESSCH----------HHHHHHHHTEEEEEEEEECCC
T ss_pred             EEECCCC----------hhHHHHHHHhcCCCEEEEEee
Confidence            9863211          123345589999999977653

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=86.81  E-value=1.5  Score=42.13  Aligned_cols=92  Identities=9%  Similarity=0.123  Sum_probs=57.8

Q ss_pred             cCCCCCCeEEEECC--ccChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeeccc--CCC-----CCCCCccce
Q 037675          260 LGSGGIRIGFDIGG--GSGTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLD--HRF-----PFYDNVFDL  329 (418)
Q Consensus       260 l~~g~~r~VLDvGC--GtG~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~--e~L-----Pf~d~sFDl  329 (418)
                      +.+|  ++||-+|+  |.|..++.++. .|..++  ++|.++..++.+++.|. ....+..  +.+     ....+.+|+
T Consensus       143 ~~~g--~~vlV~Ga~ggiG~~~~~~~~~~G~~V~--~~~~~~~~~~~~~~~g~-~~~~d~~~~~~~~~~~~~~~~~~~d~  217 (333)
T 1v3u_A          143 VKGG--ETVLVSAAAGAVGSVVGQIAKLKGCKVV--GAAGSDEKIAYLKQIGF-DAAFNYKTVNSLEEALKKASPDGYDC  217 (333)
T ss_dssp             CCSS--CEEEEESTTBHHHHHHHHHHHHTTCEEE--EEESSHHHHHHHHHTTC-SEEEETTSCSCHHHHHHHHCTTCEEE
T ss_pred             CCCC--CEEEEecCCCcHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHhcCC-cEEEecCCHHHHHHHHHHHhCCCCeE
Confidence            4555  58999998  56777766665 577665  35777777777766665 2222211  111     001246999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      |+.+..       .   ..+.+..+.|||||.+++..
T Consensus       218 vi~~~g-------~---~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          218 YFDNVG-------G---EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             EEESSC-------H---HHHHHHHTTEEEEEEEEECC
T ss_pred             EEECCC-------h---HHHHHHHHHHhcCCEEEEEe
Confidence            986432       1   34678889999999987654

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=86.06  E-value=2  Score=41.96  Aligned_cols=94  Identities=16%  Similarity=0.104  Sum_probs=59.9

Q ss_pred             cCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeeccc--CCCC-----CCCCccce
Q 037675          260 LGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLD--HRFP-----FYDNVFDL  329 (418)
Q Consensus       260 l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~--e~LP-----f~d~sFDl  329 (418)
                      +.+|  .+||-+|+|. |.++..+++. |. .++  ++|.++..++.+++.|....+....  +.+.     ...+.+|+
T Consensus       190 ~~~g--~~VlV~GaG~vG~~a~qla~~~Ga~~Vi--~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~  265 (374)
T 1cdo_A          190 VEPG--STCAVFGLGAVGLAAVMGCHSAGAKRII--AVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDF  265 (374)
T ss_dssp             CCTT--CEEEEECCSHHHHHHHHHHHHTTCSEEE--EECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred             CCCC--CEEEEECCCHHHHHHHHHHHHcCCCEEE--EEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCE
Confidence            4555  4899999865 7777777764 76 554  4688888888888888632221111  1110     11236899


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCC-cEEEEEe
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAG-GLFWLDN  366 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPG-G~~ii~~  366 (418)
                      |+-...     .    ...+.+..+.|||| |.+++..
T Consensus       266 vid~~g-----~----~~~~~~~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          266 SLECVG-----N----VGVMRNALESCLKGWGVSVLVG  294 (374)
T ss_dssp             EEECSC-----C----HHHHHHHHHTBCTTTCEEEECS
T ss_pred             EEECCC-----C----HHHHHHHHHHhhcCCcEEEEEc
Confidence            985321     1    14677889999999 9987654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=85.79  E-value=1.2  Score=42.80  Aligned_cols=95  Identities=13%  Similarity=0.070  Sum_probs=60.2

Q ss_pred             HccCCCCCCeEEEECC--ccChHHHHHhh-cCcEEEEeccCCCHHhHHHH-HHcCCCceeecccCCC-----CCCCCccc
Q 037675          258 LALGSGGIRIGFDIGG--GSGTFAARMAE-RNVTVITNTLNVDAPYSEFI-AARGLFPLYLSLDHRF-----PFYDNVFD  328 (418)
Q Consensus       258 L~l~~g~~r~VLDvGC--GtG~faa~La~-~gV~vv~~alD~s~~~l~~a-~eRGli~~~~~~~e~L-----Pf~d~sFD  328 (418)
                      ..+.+|  ++||-+|+  |.|..+..+++ .|..++  +++.++..++.+ ++.|....+....+.+     ....+.+|
T Consensus       145 ~~~~~g--~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d  220 (336)
T 4b7c_A          145 GQPKNG--ETVVISGAAGAVGSVAGQIARLKGCRVV--GIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGID  220 (336)
T ss_dssp             TCCCTT--CEEEESSTTSHHHHHHHHHHHHTTCEEE--EEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred             cCCCCC--CEEEEECCCCHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCce
Confidence            345666  48999998  56777777765 477665  357788878877 6666522221111110     00135699


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +|+....       .   ..+.+..+.|||||.+++..
T Consensus       221 ~vi~~~g-------~---~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          221 VFFDNVG-------G---EILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             EEEESSC-------H---HHHHHHHTTEEEEEEEEECC
T ss_pred             EEEECCC-------c---chHHHHHHHHhhCCEEEEEe
Confidence            9986331       1   35778889999999997754

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=85.62  E-value=1.1  Score=43.81  Aligned_cols=94  Identities=16%  Similarity=0.058  Sum_probs=60.7

Q ss_pred             cCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC------CCCCccceEE
Q 037675          260 LGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP------FYDNVFDLVH  331 (418)
Q Consensus       260 l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP------f~d~sFDlV~  331 (418)
                      +.+|  .+||=+|+|. |.++..+++. |..++  +++.++..++.+++.|....+....+.+.      ...+.+|+|+
T Consensus       187 ~~~g--~~VlV~G~G~vG~~a~qla~~~Ga~Vi--~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vi  262 (363)
T 3uog_A          187 LRAG--DRVVVQGTGGVALFGLQIAKATGAEVI--VTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHIL  262 (363)
T ss_dssp             CCTT--CEEEEESSBHHHHHHHHHHHHTTCEEE--EEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEE
T ss_pred             CCCC--CEEEEECCCHHHHHHHHHHHHcCCEEE--EEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEE
Confidence            4555  4899999875 7777777764 77765  46788888888888887333221111110      1234799998


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      -... .         ..+.+..+.|||||.+++...
T Consensus       263 d~~g-~---------~~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          263 EIAG-G---------AGLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             EETT-S---------SCHHHHHHHEEEEEEEEEECC
T ss_pred             ECCC-h---------HHHHHHHHHhhcCCEEEEEec
Confidence            6432 1         234577789999999977643

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=85.23  E-value=1.1  Score=43.52  Aligned_cols=94  Identities=20%  Similarity=0.152  Sum_probs=58.3

Q ss_pred             ccCCCCCCeEEEECC--ccChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeeccc--CCCC-----CCCCccc
Q 037675          259 ALGSGGIRIGFDIGG--GSGTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLD--HRFP-----FYDNVFD  328 (418)
Q Consensus       259 ~l~~g~~r~VLDvGC--GtG~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~--e~LP-----f~d~sFD  328 (418)
                      .+.+|  .+||-+|+  |.|..+..++. .|..++.  ++.++...+.+++.|. ....+..  +.+.     ..++.+|
T Consensus       166 ~~~~g--~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~--~~~~~~~~~~~~~~g~-~~~~d~~~~~~~~~~~~~~~~~~~D  240 (347)
T 2hcy_A          166 NLMAG--HWVAISGAAGGLGSLAVQYAKAMGYRVLG--IDGGEGKEELFRSIGG-EVFIDFTKEKDIVGAVLKATDGGAH  240 (347)
T ss_dssp             TCCTT--CEEEEETTTSHHHHHHHHHHHHTTCEEEE--EECSTTHHHHHHHTTC-CEEEETTTCSCHHHHHHHHHTSCEE
T ss_pred             CCCCC--CEEEEECCCchHHHHHHHHHHHCCCcEEE--EcCCHHHHHHHHHcCC-ceEEecCccHhHHHHHHHHhCCCCC
Confidence            34555  48999998  56777766665 5776653  4556666677777665 2222211  1110     0112689


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +|+.....         ...+.+..+.|+|||.+++..
T Consensus       241 ~vi~~~g~---------~~~~~~~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          241 GVINVSVS---------EAAIEASTRYVRANGTTVLVG  269 (347)
T ss_dssp             EEEECSSC---------HHHHHHHTTSEEEEEEEEECC
T ss_pred             EEEECCCc---------HHHHHHHHHHHhcCCEEEEEe
Confidence            98865321         156778999999999987654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=85.09  E-value=2.6  Score=40.61  Aligned_cols=93  Identities=15%  Similarity=0.070  Sum_probs=59.6

Q ss_pred             ccCCCCCCeEEEECCc-cChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeeccc-CCCC-----CCCCccceE
Q 037675          259 ALGSGGIRIGFDIGGG-SGTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLD-HRFP-----FYDNVFDLV  330 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCG-tG~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~-e~LP-----f~d~sFDlV  330 (418)
                      .+.+|  .+||-+|+| .|..+..+++ .|..++  +++.++..++.+++-|.. ...+.. +.+.     .. +.+|+|
T Consensus       161 ~~~~g--~~VlV~GaG~vG~~~~~~a~~~Ga~Vi--~~~~~~~~~~~~~~lGa~-~~~d~~~~~~~~~~~~~~-~~~d~v  234 (339)
T 1rjw_A          161 GAKPG--EWVAIYGIGGLGHVAVQYAKAMGLNVV--AVDIGDEKLELAKELGAD-LVVNPLKEDAAKFMKEKV-GGVHAA  234 (339)
T ss_dssp             TCCTT--CEEEEECCSTTHHHHHHHHHHTTCEEE--EECSCHHHHHHHHHTTCS-EEECTTTSCHHHHHHHHH-SSEEEE
T ss_pred             CCCCC--CEEEEECCCHHHHHHHHHHHHcCCEEE--EEeCCHHHHHHHHHCCCC-EEecCCCccHHHHHHHHh-CCCCEE
Confidence            45666  489999986 4677777765 477664  468888888888887752 222211 1100     00 468998


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +....     ..    ..+.+..+.|||||.+++..
T Consensus       235 id~~g-----~~----~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          235 VVTAV-----SK----PAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             EESSC-----CH----HHHHHHHHHEEEEEEEEECC
T ss_pred             EECCC-----CH----HHHHHHHHHhhcCCEEEEec
Confidence            86432     11    45678889999999987653

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=85.00  E-value=2.5  Score=41.33  Aligned_cols=95  Identities=14%  Similarity=0.040  Sum_probs=61.0

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeeccc--CCC-----CCCCCccc
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLD--HRF-----PFYDNVFD  328 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~--e~L-----Pf~d~sFD  328 (418)
                      .+.+|  .+||=+|+|. |.++..+++. |. .++  ++|.++...+.+++-|...++....  +.+     ...++.+|
T Consensus       188 ~~~~g--~~VlV~GaG~vG~~aiqlak~~Ga~~Vi--~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~D  263 (373)
T 1p0f_A          188 KVTPG--STCAVFGLGGVGFSAIVGCKAAGASRII--GVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVD  263 (373)
T ss_dssp             CCCTT--CEEEEECCSHHHHHHHHHHHHHTCSEEE--EECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCCC--CEEEEECCCHHHHHHHHHHHHcCCCeEE--EECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCC
Confidence            35555  4899999875 7777787765 76 554  4678888888888888632222111  111     01123699


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCC-cEEEEEe
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAG-GLFWLDN  366 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPG-G~~ii~~  366 (418)
                      +|+-...     .    ...+.+..+.|||| |.+++..
T Consensus       264 vvid~~g-----~----~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          264 YAVECAG-----R----IETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             EEEECSC-----C----HHHHHHHHHTBCTTTCEEEECC
T ss_pred             EEEECCC-----C----HHHHHHHHHHHhcCCCEEEEEc
Confidence            9985321     1    14677889999999 9987654

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=84.80  E-value=2.4  Score=41.34  Aligned_cols=94  Identities=15%  Similarity=0.092  Sum_probs=60.1

Q ss_pred             cCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeeccc--CCC-----CCCCCccce
Q 037675          260 LGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLD--HRF-----PFYDNVFDL  329 (418)
Q Consensus       260 l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~--e~L-----Pf~d~sFDl  329 (418)
                      +.+|  .+||-+|+|. |.++..+++. |. .++  ++|.++...+.+++.|....+....  +.+     ...++.+|+
T Consensus       188 ~~~g--~~VlV~GaG~vG~~avqla~~~Ga~~Vi--~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~  263 (373)
T 2fzw_A          188 LEPG--SVCAVFGLGGVGLAVIMGCKVAGASRII--GVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDY  263 (373)
T ss_dssp             CCTT--CEEEEECCSHHHHHHHHHHHHHTCSEEE--EECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CCCC--CEEEEECCCHHHHHHHHHHHHcCCCeEE--EEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCE
Confidence            4555  4899999865 6777777764 76 554  4677888888888888632222111  111     011236999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCC-cEEEEEe
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAG-GLFWLDN  366 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPG-G~~ii~~  366 (418)
                      |+-...     .    ...+.+..+.|||| |.+++..
T Consensus       264 vid~~g-----~----~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          264 SFECIG-----N----VKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             EEECSC-----C----HHHHHHHHHTBCTTTCEEEECS
T ss_pred             EEECCC-----c----HHHHHHHHHhhccCCcEEEEEe
Confidence            985321     1    14577889999999 9997654

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=84.76  E-value=1.6  Score=42.07  Aligned_cols=93  Identities=10%  Similarity=0.110  Sum_probs=58.8

Q ss_pred             ccCCCCCCeEEEECC--ccChHHHHHhh-cCcEEEEeccCCCHHhHHHHH-HcCCCceeecccC--CCC-----CCCCcc
Q 037675          259 ALGSGGIRIGFDIGG--GSGTFAARMAE-RNVTVITNTLNVDAPYSEFIA-ARGLFPLYLSLDH--RFP-----FYDNVF  327 (418)
Q Consensus       259 ~l~~g~~r~VLDvGC--GtG~faa~La~-~gV~vv~~alD~s~~~l~~a~-eRGli~~~~~~~e--~LP-----f~d~sF  327 (418)
                      .+.+|  .+||-+|+  |.|..+..+++ .|..++  +++.++..++.++ +-|. ....+...  .+.     ...+.+
T Consensus       152 ~~~~g--~~vlI~Ga~g~iG~~~~~~a~~~G~~V~--~~~~~~~~~~~~~~~~g~-~~~~d~~~~~~~~~~~~~~~~~~~  226 (345)
T 2j3h_A          152 SPKEG--ETVYVSAASGAVGQLVGQLAKMMGCYVV--GSAGSKEKVDLLKTKFGF-DDAFNYKEESDLTAALKRCFPNGI  226 (345)
T ss_dssp             CCCTT--CEEEESSTTSHHHHHHHHHHHHTTCEEE--EEESSHHHHHHHHHTSCC-SEEEETTSCSCSHHHHHHHCTTCE
T ss_pred             CCCCC--CEEEEECCCcHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHHcCC-ceEEecCCHHHHHHHHHHHhCCCC
Confidence            34555  48999997  56777777766 477664  3577777778777 4565 22222111  110     012469


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      |+|+....        .  ..+.+..+.|+|||.+++..
T Consensus       227 d~vi~~~g--------~--~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          227 DIYFENVG--------G--KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             EEEEESSC--------H--HHHHHHHTTEEEEEEEEECC
T ss_pred             cEEEECCC--------H--HHHHHHHHHHhcCCEEEEEc
Confidence            99986432        1  35678899999999997653

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=84.70  E-value=2.3  Score=41.63  Aligned_cols=95  Identities=12%  Similarity=0.049  Sum_probs=60.2

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeeccc--CCC-----CCCCCccc
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLD--HRF-----PFYDNVFD  328 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~--e~L-----Pf~d~sFD  328 (418)
                      .+.+|  .+||-+|+|. |.++..+++. |. .++  ++|.++..++.+++.|....+....  +.+     ...++.+|
T Consensus       188 ~~~~g--~~VlV~GaG~vG~~a~qla~~~Ga~~Vi--~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D  263 (374)
T 2jhf_A          188 KVTQG--STCAVFGLGGVGLSVIMGCKAAGAARII--GVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVD  263 (374)
T ss_dssp             CCCTT--CEEEEECCSHHHHHHHHHHHHTTCSEEE--EECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCCC--CEEEEECCCHHHHHHHHHHHHcCCCeEE--EEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCc
Confidence            34555  4899999875 6777777764 76 554  4677888888888888632222111  111     01123699


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCC-cEEEEEe
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAG-GLFWLDN  366 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPG-G~~ii~~  366 (418)
                      +|+-...     ..    ..+.+..+.|||| |.+++..
T Consensus       264 ~vid~~g-----~~----~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          264 FSFEVIG-----RL----DTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             EEEECSC-----CH----HHHHHHHHHBCTTTCEEEECS
T ss_pred             EEEECCC-----CH----HHHHHHHHHhhcCCcEEEEec
Confidence            9885321     11    4567888999999 9987654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=84.57  E-value=3.1  Score=39.91  Aligned_cols=97  Identities=14%  Similarity=0.103  Sum_probs=60.6

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC------CCCCccceE
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP------FYDNVFDLV  330 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP------f~d~sFDlV  330 (418)
                      .+.+|  .+||=.|+|. |.++..+++. |..++ +++|.++.-++.+++-|....+....+..+      ...+-+|+|
T Consensus       157 ~~~~g--~~VlV~GaG~vG~~aiq~ak~~G~~~v-i~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v  233 (346)
T 4a2c_A          157 QGCEN--KNVIIIGAGTIGLLAIQCAVALGAKSV-TAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLI  233 (346)
T ss_dssp             TCCTT--SEEEEECCSHHHHHHHHHHHHTTCSEE-EEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEE
T ss_pred             ccCCC--CEEEEECCCCcchHHHHHHHHcCCcEE-EEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcccc
Confidence            34555  4899999875 5566666664 65443 346888888999999887433322111110      123457777


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +...     ...    ..+....++|||||.+++...
T Consensus       234 ~d~~-----G~~----~~~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          234 LETA-----GVP----QTVELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             EECS-----CSH----HHHHHHHHHCCTTCEEEECCC
T ss_pred             cccc-----ccc----chhhhhhheecCCeEEEEEec
Confidence            6532     111    566788899999999977654

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=84.54  E-value=2.7  Score=41.15  Aligned_cols=94  Identities=13%  Similarity=0.041  Sum_probs=60.0

Q ss_pred             cCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeeccc--CCCC-----CCCCccce
Q 037675          260 LGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLD--HRFP-----FYDNVFDL  329 (418)
Q Consensus       260 l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~--e~LP-----f~d~sFDl  329 (418)
                      +.+|  .+||=+|+|. |.++..+++. |. .++  ++|.++...+.+++.|....+....  +.+.     ..++.+|+
T Consensus       193 ~~~g--~~VlV~GaG~vG~~aiqlak~~Ga~~Vi--~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dv  268 (376)
T 1e3i_A          193 VTPG--STCAVFGLGCVGLSAIIGCKIAGASRII--AIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDY  268 (376)
T ss_dssp             CCTT--CEEEEECCSHHHHHHHHHHHHTTCSEEE--EECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred             CCCC--CEEEEECCCHHHHHHHHHHHHcCCCeEE--EEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccE
Confidence            4455  4899999874 7777777764 76 554  4688888888888888632221111  1110     11236899


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCC-cEEEEEe
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAG-GLFWLDN  366 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPG-G~~ii~~  366 (418)
                      |+-...     .    ...+.+..+.|||| |.+++..
T Consensus       269 vid~~G-----~----~~~~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          269 SLDCAG-----T----AQTLKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             EEESSC-----C----HHHHHHHHHTBCTTTCEEEECC
T ss_pred             EEECCC-----C----HHHHHHHHHHhhcCCCEEEEEC
Confidence            885321     1    15677889999999 9987654

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=84.36  E-value=1.1  Score=43.60  Aligned_cols=93  Identities=14%  Similarity=0.179  Sum_probs=57.7

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeeccc-----CCCCCCCCccceEE
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLD-----HRFPFYDNVFDLVH  331 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~-----e~LPf~d~sFDlV~  331 (418)
                      .+.+|  .+||-+|+|. |.++..+++. |..++  +++.++..++.+++.|...++....     +.+.   +.||+|+
T Consensus       176 ~~~~g--~~VlV~GaG~vG~~~~qlak~~Ga~Vi--~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~---~~~D~vi  248 (360)
T 1piw_A          176 GCGPG--KKVGIVGLGGIGSMGTLISKAMGAETY--VISRSSRKREDAMKMGADHYIATLEEGDWGEKYF---DTFDLIV  248 (360)
T ss_dssp             TCSTT--CEEEEECCSHHHHHHHHHHHHHTCEEE--EEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSC---SCEEEEE
T ss_pred             CCCCC--CEEEEECCCHHHHHHHHHHHHCCCEEE--EEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhh---cCCCEEE
Confidence            45556  4899999864 7777777764 77654  4566777778888877633322111     1121   4799998


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      -...-..   .    ..+.+..+.|||||.+++.
T Consensus       249 d~~g~~~---~----~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          249 VCASSLT---D----IDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             ECCSCST---T----CCTTTGGGGEEEEEEEEEC
T ss_pred             ECCCCCc---H----HHHHHHHHHhcCCCEEEEe
Confidence            6432200   0    1234677899999998764

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=84.15  E-value=1.7  Score=42.15  Aligned_cols=94  Identities=18%  Similarity=0.228  Sum_probs=59.1

Q ss_pred             ccCCCCCCeEEEECCc--cChHHHHHhh-c-CcEEEEeccCCCHHhHHHHHHcCCCceeeccc-CCC-----CCCC-Ccc
Q 037675          259 ALGSGGIRIGFDIGGG--SGTFAARMAE-R-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLD-HRF-----PFYD-NVF  327 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCG--tG~faa~La~-~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~-e~L-----Pf~d-~sF  327 (418)
                      .+.+|  ++||-+|+|  .|..+..+++ . |..++  ++|.++..++.+++.|. ....+.. +..     .... +.+
T Consensus       167 ~~~~g--~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi--~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~  241 (347)
T 1jvb_A          167 SLDPT--KTLLVVGAGGGLGTMAVQIAKAVSGATII--GVDVREEAVEAAKRAGA-DYVINASMQDPLAEIRRITESKGV  241 (347)
T ss_dssp             TCCTT--CEEEEETTTSHHHHHHHHHHHHHTCCEEE--EEESSHHHHHHHHHHTC-SEEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCC--CEEEEECCCccHHHHHHHHHHHcCCCeEE--EEcCCHHHHHHHHHhCC-CEEecCCCccHHHHHHHHhcCCCc
Confidence            35555  489999998  5666666554 5 77764  46777887888877775 2222211 110     0111 479


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      |+|+....     . .   ..+.+..+.|||||.+++..
T Consensus       242 d~vi~~~g-----~-~---~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          242 DAVIDLNN-----S-E---KTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             EEEEESCC-----C-H---HHHTTGGGGEEEEEEEEECC
T ss_pred             eEEEECCC-----C-H---HHHHHHHHHHhcCCEEEEEC
Confidence            99986432     1 1   46778899999999997754

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=84.15  E-value=1.7  Score=42.60  Aligned_cols=96  Identities=18%  Similarity=0.134  Sum_probs=61.3

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecc--cCCC-----CCCCCccc
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSL--DHRF-----PFYDNVFD  328 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~--~e~L-----Pf~d~sFD  328 (418)
                      .+.+|  .+||=+|+|. |.++..+++. |. .++  ++|.++..++.+++-|....+...  .+.+     ...++.+|
T Consensus       190 ~~~~g--~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi--~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D  265 (378)
T 3uko_A          190 KVEPG--SNVAIFGLGTVGLAVAEGAKTAGASRII--GIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVD  265 (378)
T ss_dssp             CCCTT--CCEEEECCSHHHHHHHHHHHHHTCSCEE--EECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCCC--CEEEEECCCHHHHHHHHHHHHcCCCeEE--EEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCC
Confidence            34555  4799999874 7778787765 76 454  468888888888887763322211  1111     01233799


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCC-cEEEEEec
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAG-GLFWLDNF  367 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPG-G~~ii~~~  367 (418)
                      +|+-...     ..    ..+.+..+.|||| |.+++...
T Consensus       266 ~vid~~g-----~~----~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          266 YSFECIG-----NV----SVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             EEEECSC-----CH----HHHHHHHHTBCTTTCEEEECSC
T ss_pred             EEEECCC-----CH----HHHHHHHHHhhccCCEEEEEcc
Confidence            9986321     11    5677899999997 99877543

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=83.79  E-value=1.6  Score=41.92  Aligned_cols=93  Identities=14%  Similarity=0.039  Sum_probs=59.5

Q ss_pred             cCCCCCCeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC------CCCCCccceE
Q 037675          260 LGSGGIRIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF------PFYDNVFDLV  330 (418)
Q Consensus       260 l~~g~~r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L------Pf~d~sFDlV  330 (418)
                      +.+|  .+||=+|+  |.|..+..+++. |..++  +++.++..++.+++.|....+....+.+      -...+.+|+|
T Consensus       138 ~~~g--~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi--~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvv  213 (325)
T 3jyn_A          138 VKPG--EIILFHAAAGGVGSLACQWAKALGAKLI--GTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVV  213 (325)
T ss_dssp             CCTT--CEEEESSTTSHHHHHHHHHHHHHTCEEE--EEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEE
T ss_pred             CCCC--CEEEEEcCCcHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEE
Confidence            4445  48999983  557777777764 87765  3577888888888877522222111111      0223579999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +....-          ..+.+..+.|||||.+++..
T Consensus       214 id~~g~----------~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          214 YDGVGQ----------DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             EESSCG----------GGHHHHHTTEEEEEEEEECC
T ss_pred             EECCCh----------HHHHHHHHHhcCCCEEEEEe
Confidence            864321          24557889999999997764

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=83.19  E-value=1.7  Score=43.43  Aligned_cols=51  Identities=14%  Similarity=0.094  Sum_probs=35.9

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc---CCCceeecccC
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR---GLFPLYLSLDH  318 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR---Gli~~~~~~~e  318 (418)
                      .+|||||.|.|.++..|+++  .-.++  +++++..++....+.   +-..++++++-
T Consensus        60 ~~VlEIGPG~G~LT~~Ll~~~~~~~vv--avE~D~~l~~~L~~~~~~~~l~ii~~D~l  115 (353)
T 1i4w_A           60 LKVLDLYPGVGIQSAIFYNKYCPRQYS--LLEKRSSLYKFLNAKFEGSPLQILKRDPY  115 (353)
T ss_dssp             CEEEEESCTTCHHHHHHHHHHCCSEEE--EECCCHHHHHHHHHHTTTSSCEEECSCTT
T ss_pred             CEEEEECCCCCHHHHHHHhhCCCCEEE--EEecCHHHHHHHHHhccCCCEEEEECCcc
Confidence            58999999999999999976  33443  468888887766553   22345555553

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=82.96  E-value=1.9  Score=41.61  Aligned_cols=88  Identities=14%  Similarity=0.019  Sum_probs=56.5

Q ss_pred             CeEEEECC--ccChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeeccc-CC----C-C-CCCCccceEEecCc
Q 037675          266 RIGFDIGG--GSGTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLD-HR----F-P-FYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGC--GtG~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~-e~----L-P-f~d~sFDlV~s~~~  335 (418)
                      .+||-+|+  |.|..+..+++ .|..++  +++.++..++.+++.|.. ...+.. +.    + . ...+.+|+|+....
T Consensus       168 ~~vlV~Gasg~iG~~~~~~a~~~G~~Vi--~~~~~~~~~~~~~~~ga~-~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  244 (343)
T 2eih_A          168 DDVLVMAAGSGVSVAAIQIAKLFGARVI--ATAGSEDKLRRAKALGAD-ETVNYTHPDWPKEVRRLTGGKGADKVVDHTG  244 (343)
T ss_dssp             CEEEECSTTSTTHHHHHHHHHHTTCEEE--EEESSHHHHHHHHHHTCS-EEEETTSTTHHHHHHHHTTTTCEEEEEESSC
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHhcCCC-EEEcCCcccHHHHHHHHhCCCCceEEEECCC
Confidence            58999998  56777777765 477664  357778878877776752 222211 11    0 0 11246999987543


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                       .         ..+.+..+.|||||.+++..
T Consensus       245 -~---------~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          245 -A---------LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             -S---------SSHHHHHHHEEEEEEEEESS
T ss_pred             -H---------HHHHHHHHhhccCCEEEEEe
Confidence             1         23457788999999987654

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=82.53  E-value=1.9  Score=41.56  Aligned_cols=94  Identities=16%  Similarity=0.140  Sum_probs=61.9

Q ss_pred             cCCCCCCeEEEECCcc-ChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC------CCCCccceE
Q 037675          260 LGSGGIRIGFDIGGGS-GTFAARMAER--NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP------FYDNVFDLV  330 (418)
Q Consensus       260 l~~g~~r~VLDvGCGt-G~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP------f~d~sFDlV  330 (418)
                      +.+|  .+||=+|+|. |.++..+++.  +..++  ++|.++...+.+++.|....+.. .+.+.      ...+.+|+|
T Consensus       169 ~~~g--~~vlv~GaG~vG~~a~qla~~~g~~~Vi--~~~~~~~~~~~~~~lGa~~~i~~-~~~~~~~v~~~t~g~g~d~v  243 (345)
T 3jv7_A          169 LGPG--STAVVIGVGGLGHVGIQILRAVSAARVI--AVDLDDDRLALAREVGADAAVKS-GAGAADAIRELTGGQGATAV  243 (345)
T ss_dssp             CCTT--CEEEEECCSHHHHHHHHHHHHHCCCEEE--EEESCHHHHHHHHHTTCSEEEEC-STTHHHHHHHHHGGGCEEEE
T ss_pred             CCCC--CEEEEECCCHHHHHHHHHHHHcCCCEEE--EEcCCHHHHHHHHHcCCCEEEcC-CCcHHHHHHHHhCCCCCeEE
Confidence            4555  4899999875 7778888764  45554  46889999999999887333321 11110      112368888


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +-.-     ...    ..+.+..+.|+|||.+++...
T Consensus       244 ~d~~-----G~~----~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          244 FDFV-----GAQ----STIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             EESS-----CCH----HHHHHHHHHEEEEEEEEECSC
T ss_pred             EECC-----CCH----HHHHHHHHHHhcCCEEEEECC
Confidence            8532     111    467799999999999977653

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=81.79  E-value=1.9  Score=42.48  Aligned_cols=94  Identities=16%  Similarity=0.186  Sum_probs=59.6

Q ss_pred             cCCCCCCeEEEECCcc-ChHHHHHhhc-C-cEEEEeccCCCHHhHHHHHHcCCCceeecc---c----CCC-C-CCCCcc
Q 037675          260 LGSGGIRIGFDIGGGS-GTFAARMAER-N-VTVITNTLNVDAPYSEFIAARGLFPLYLSL---D----HRF-P-FYDNVF  327 (418)
Q Consensus       260 l~~g~~r~VLDvGCGt-G~faa~La~~-g-V~vv~~alD~s~~~l~~a~eRGli~~~~~~---~----e~L-P-f~d~sF  327 (418)
                      +.+|  .+||-+|+|. |.++..+++. | ..++  +++.++..++.+++.|...++...   .    +.+ . ...+.+
T Consensus       193 ~~~g--~~VlV~GaG~vG~~aiqlak~~Ga~~Vi--~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~  268 (380)
T 1vj0_A          193 SFAG--KTVVIQGAGPLGLFGVVIARSLGAENVI--VIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGA  268 (380)
T ss_dssp             CCBT--CEEEEECCSHHHHHHHHHHHHTTBSEEE--EEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCE
T ss_pred             CCCC--CEEEEECcCHHHHHHHHHHHHcCCceEE--EEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCC
Confidence            4455  4899999764 7777777764 7 3664  467888888888887763222211   0    111 0 123369


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      |+|+-...     ..    ..+.+..+.|||||.+++..
T Consensus       269 Dvvid~~g-----~~----~~~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          269 DFILEATG-----DS----RALLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             EEEEECSS-----CT----THHHHHHHHEEEEEEEEECC
T ss_pred             cEEEECCC-----CH----HHHHHHHHHHhcCCEEEEEe
Confidence            99986432     11    35668889999999997654

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=81.71  E-value=3.3  Score=40.45  Aligned_cols=94  Identities=20%  Similarity=0.187  Sum_probs=60.0

Q ss_pred             ccCCCCCCeEEEEC--CccChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC----C-CCCCccceE
Q 037675          259 ALGSGGIRIGFDIG--GGSGTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF----P-FYDNVFDLV  330 (418)
Q Consensus       259 ~l~~g~~r~VLDvG--CGtG~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L----P-f~d~sFDlV  330 (418)
                      .+.+|  .+||-+|  .|.|..+..+++ .|..++  +++.+++.++.+++.|....+....+.+    . ...+.+|+|
T Consensus       160 ~~~~g--~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi--~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~v  235 (362)
T 2c0c_A          160 GLSEG--KKVLVTAAAGGTGQFAMQLSKKAKCHVI--GTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVV  235 (362)
T ss_dssp             CCCTT--CEEEETTTTBTTHHHHHHHHHHTTCEEE--EEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEE
T ss_pred             CCCCC--CEEEEeCCCcHHHHHHHHHHHhCCCEEE--EEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEE
Confidence            45556  4899999  456888877776 477664  4577788888888877532222111110    0 112468999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +....     .     ..+.+..+.|||||.+++..
T Consensus       236 id~~g-----~-----~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          236 YESVG-----G-----AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             EECSC-----T-----HHHHHHHHHEEEEEEEEECC
T ss_pred             EECCC-----H-----HHHHHHHHHHhcCCEEEEEe
Confidence            86432     1     35678889999999987654

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=81.43  E-value=1.9  Score=41.39  Aligned_cols=93  Identities=13%  Similarity=0.040  Sum_probs=58.7

Q ss_pred             cCCCCCCeEEEECC--ccChHHHHHhh-cCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC------CCCCccceE
Q 037675          260 LGSGGIRIGFDIGG--GSGTFAARMAE-RNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP------FYDNVFDLV  330 (418)
Q Consensus       260 l~~g~~r~VLDvGC--GtG~faa~La~-~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP------f~d~sFDlV  330 (418)
                      +.+|  .+||=+|+  |.|..+..+++ .|..++  +++.++..++.+++.|....+....+.+.      ...+.+|+|
T Consensus       146 ~~~g--~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi--~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~v  221 (334)
T 3qwb_A          146 VKKG--DYVLLFAAAGGVGLILNQLLKMKGAHTI--AVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDAS  221 (334)
T ss_dssp             CCTT--CEEEESSTTBHHHHHHHHHHHHTTCEEE--EEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred             CCCC--CEEEEECCCCHHHHHHHHHHHHCCCEEE--EEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEE
Confidence            4455  48999994  55777777766 477765  45778888888888775222221111110      123469999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +....-          ..+....+.|||||.+++..
T Consensus       222 id~~g~----------~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          222 FDSVGK----------DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             EECCGG----------GGHHHHHHHEEEEEEEEECC
T ss_pred             EECCCh----------HHHHHHHHHhccCCEEEEEc
Confidence            864321          23557788999999997754

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=81.38  E-value=2.5  Score=40.89  Aligned_cols=90  Identities=17%  Similarity=0.099  Sum_probs=57.4

Q ss_pred             CeEEEECCcc-ChHHHHHhh-cCc-EEEEeccCCCHHhHHHHHHcCCCceeecccCCCC------CCCCccceEEecCcC
Q 037675          266 RIGFDIGGGS-GTFAARMAE-RNV-TVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP------FYDNVFDLVHASSGL  336 (418)
Q Consensus       266 r~VLDvGCGt-G~faa~La~-~gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP------f~d~sFDlV~s~~~L  336 (418)
                      .+||-+|+|. |..+..+++ .|. .++  +++.++..++.+++.|....+....+.+.      ...+.+|+|+.... 
T Consensus       169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi--~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g-  245 (348)
T 2d8a_A          169 KSVLITGAGPLGLLGIAVAKASGAYPVI--VSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSG-  245 (348)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSEE--EECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEE--EECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCC-
Confidence            4899999864 667777776 476 554  35778888888888776222211111110      12246999986432 


Q ss_pred             cCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                          ..    ..+.+..+.|+|||.+++..
T Consensus       246 ----~~----~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          246 ----AP----KALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             ----CH----HHHHHHHHHEEEEEEEEECC
T ss_pred             ----CH----HHHHHHHHHHhcCCEEEEEc
Confidence                11    45678889999999987654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=81.19  E-value=4.3  Score=43.09  Aligned_cols=61  Identities=16%  Similarity=0.271  Sum_probs=38.1

Q ss_pred             CCccceEEecCcCcCCCChhH-HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEE
Q 037675          324 DNVFDLVHASSGLDVGGQPEK-LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       324 d~sFDlV~s~~~L~~~~~~~~-le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W  392 (418)
                      +..||.++... |.+-.+++. -..++.+|.|++||||.+.-   +....    .....+...||..-+.
T Consensus       177 ~~~~d~~~~D~-f~p~~np~~w~~~~~~~l~~~~~~g~~~~t---~~~~~----~vr~~L~~aGf~v~~~  238 (676)
T 3ps9_A          177 NQKVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARPGGTLAT---FTSAG----FVRRGLQDAGFTMQKR  238 (676)
T ss_dssp             TTCEEEEEECC-SCGGGCGGGSCHHHHHHHHHHEEEEEEEEE---SCCCH----HHHHHHHHHTCEEEEE
T ss_pred             CCcccEEEECC-CCCcCChhhhhHHHHHHHHHHhCCCCEEEe---ccCcH----HHHHHHHhCCeEEEec
Confidence            46799999743 322111110 12789999999999998732   22222    3566678889976543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=81.17  E-value=5.3  Score=39.55  Aligned_cols=96  Identities=15%  Similarity=0.126  Sum_probs=57.7

Q ss_pred             cCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecccCCCC------CCCCccceE
Q 037675          260 LGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP------FYDNVFDLV  330 (418)
Q Consensus       260 l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP------f~d~sFDlV  330 (418)
                      +.+|  .+||=+|+|. |.++..+++. |. .++  ++|.++..++.+++-|...++....+.+.      ...+.+|+|
T Consensus       211 ~~~g--~~VlV~GaG~vG~~aiqlak~~Ga~~Vi--~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~v  286 (404)
T 3ip1_A          211 IRPG--DNVVILGGGPIGLAAVAILKHAGASKVI--LSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLF  286 (404)
T ss_dssp             CCTT--CEEEEECCSHHHHHHHHHHHHTTCSEEE--EECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEE
T ss_pred             CCCC--CEEEEECCCHHHHHHHHHHHHcCCCEEE--EECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEE
Confidence            3444  4888899865 6777777764 77 554  47888888999988886333221111110      123469999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhh----ccccCCcEEEEEec
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFD----RILRAGGLFWLDNF  367 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~----RVLRPGG~~ii~~~  367 (418)
                      +-..     ....   ..+..+.    +++||||.+++...
T Consensus       287 id~~-----g~~~---~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          287 LEAT-----GVPQ---LVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             EECS-----SCHH---HHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             EECC-----CCcH---HHHHHHHHHHHhccCCCcEEEEeCC
Confidence            8532     1121   2333444    45599999977653

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=80.83  E-value=1.7  Score=42.17  Aligned_cols=92  Identities=22%  Similarity=0.200  Sum_probs=57.9

Q ss_pred             cCCCCCCeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC------CCCCccceE
Q 037675          260 LGSGGIRIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP------FYDNVFDLV  330 (418)
Q Consensus       260 l~~g~~r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP------f~d~sFDlV  330 (418)
                      +.+|  .+||=+|+  |.|..+..+++. |..++  +++.++...+.+++.|....+... +.+.      ...+.+|+|
T Consensus       157 ~~~g--~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi--~~~~~~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~Dvv  231 (342)
T 4eye_A          157 LRAG--ETVLVLGAAGGIGTAAIQIAKGMGAKVI--AVVNRTAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVDMV  231 (342)
T ss_dssp             CCTT--CEEEESSTTSHHHHHHHHHHHHTTCEEE--EEESSGGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEEEE
T ss_pred             CCCC--CEEEEECCCCHHHHHHHHHHHHcCCEEE--EEeCCHHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCceEE
Confidence            4455  48999997  567788777764 77765  356667777888887763222111 2110      123469999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +....-          ..+.+..+.|+|||.+++..
T Consensus       232 id~~g~----------~~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          232 VDPIGG----------PAFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             EESCC------------CHHHHHHTEEEEEEEEEC-
T ss_pred             EECCch----------hHHHHHHHhhcCCCEEEEEE
Confidence            864321          23557888999999997754

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=80.57  E-value=2.8  Score=39.91  Aligned_cols=88  Identities=11%  Similarity=0.121  Sum_probs=58.1

Q ss_pred             eEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeec-c-cCCCCCCCCccceEEecCcCcCCCC
Q 037675          267 IGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLS-L-DHRFPFYDNVFDLVHASSGLDVGGQ  341 (418)
Q Consensus       267 ~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~-~-~e~LPf~d~sFDlV~s~~~L~~~~~  341 (418)
                      +||=+|+  |.|.++..+++. |..++  +++.++...+.+++-|....+.. . ........+.+|+|+-..     . 
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi--~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~-----g-  220 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVA--AVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTV-----G-  220 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEE--EEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESS-----C-
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEE--EEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECC-----C-
Confidence            3999997  568888888875 77664  35777788888888886333321 1 111112345789887532     1 


Q ss_pred             hhHHHHHHHHhhccccCCcEEEEEe
Q 037675          342 PEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       342 ~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                       .   ..+.+..+.|+|||.+++..
T Consensus       221 -~---~~~~~~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          221 -D---KVLAKVLAQMNYGGCVAACG  241 (324)
T ss_dssp             -H---HHHHHHHHTEEEEEEEEECC
T ss_pred             -c---HHHHHHHHHHhcCCEEEEEe
Confidence             1   36778999999999997754

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=80.40  E-value=5.9  Score=42.19  Aligned_cols=62  Identities=23%  Similarity=0.322  Sum_probs=38.1

Q ss_pred             CCccceEEecCcCcCCCChhH-HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEE
Q 037675          324 DNVFDLVHASSGLDVGGQPEK-LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       324 d~sFDlV~s~~~L~~~~~~~~-le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      +..||.++... |..-.+++. -..++.+|.|++||||.+.  .+.+ ..    .....+...||..-++.
T Consensus       169 ~~~~da~flD~-f~p~~np~~w~~~~~~~l~~~~~~g~~~~--t~~~-~~----~vr~~l~~aGf~~~~~~  231 (689)
T 3pvc_A          169 NNQVDAWFLDG-FAPAKNPDMWNEQLFNAMARMTRPGGTFS--TFTA-AG----FVRRGLQQAGFNVTKVK  231 (689)
T ss_dssp             TTCEEEEEECS-SCC--CCTTCSHHHHHHHHHHEEEEEEEE--ESCC-CH----HHHHHHHHTTCEEEEEE
T ss_pred             CCceeEEEECC-CCCCCChhhhhHHHHHHHHHHhCCCCEEE--eccC-cH----HHHHHHHhCCeEEEecc
Confidence            47899998754 322111110 1278999999999999873  2222 22    35566788999766543

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=80.30  E-value=6.2  Score=38.23  Aligned_cols=96  Identities=11%  Similarity=0.096  Sum_probs=60.2

Q ss_pred             HccCCCCCCeEEEECCcc-ChHHHHHhhc-CcE-EEEeccCCCHHhHHHHHHcCCCcee--e-c------ccCCC--CCC
Q 037675          258 LALGSGGIRIGFDIGGGS-GTFAARMAER-NVT-VITNTLNVDAPYSEFIAARGLFPLY--L-S------LDHRF--PFY  323 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~-vv~~alD~s~~~l~~a~eRGli~~~--~-~------~~e~L--Pf~  323 (418)
                      ..+.+|+  +||=+|+|. |.++..+++. |.. ++  ++|.++..++.+++.+- ..+  . .      ..+.+  -+.
T Consensus       175 ~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi--~~~~~~~~~~~a~~l~~-~~~~~~~~~~~~~~~~~~v~~~t~  249 (363)
T 3m6i_A          175 AGVRLGD--PVLICGAGPIGLITMLCAKAAGACPLV--ITDIDEGRLKFAKEICP-EVVTHKVERLSAEESAKKIVESFG  249 (363)
T ss_dssp             HTCCTTC--CEEEECCSHHHHHHHHHHHHTTCCSEE--EEESCHHHHHHHHHHCT-TCEEEECCSCCHHHHHHHHHHHTS
T ss_pred             cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEE--EECCCHHHHHHHHHhch-hcccccccccchHHHHHHHHHHhC
Confidence            3566664  788899865 7778888765 765 43  35788888888777631 111  1 0      01111  022


Q ss_pred             CCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          324 DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       324 d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .+.+|+|+-...     ..    ..+.+..+.|||||.+++...
T Consensus       250 g~g~Dvvid~~g-----~~----~~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          250 GIEPAVALECTG-----VE----SSIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             SCCCSEEEECSC-----CH----HHHHHHHHHSCTTCEEEECCC
T ss_pred             CCCCCEEEECCC-----Ch----HHHHHHHHHhcCCCEEEEEcc
Confidence            457999986321     11    467788999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	418
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	2e-04

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 19/131 (14%)

Query: 251 DFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVD------------A 298
            +L+   L    G  R+  D+  G+G  +  + E   +V +   +               
Sbjct: 46  AWLLG--LLRQHGCHRV-LDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRR 102

Query: 299 PYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGL----DVGGQPEKLEFLMFDFDR 354
               F         +L+LD   P  D    ++   +      D  G   +    + +   
Sbjct: 103 KEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIAS 162

Query: 355 ILRAGGLFWLD 365
           ++R GGL  +D
Sbjct: 163 MVRPGGLLVID 173

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	418
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.8
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.77
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.76
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.75
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.73
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.72
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.71
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.68
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.67
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.65
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.64
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.64
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.61
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.6
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.6
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.59
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.59
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.56
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.53
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.53
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.53
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.53
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.52
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.52
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.51
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.48
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.45
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.43
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.42
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.41
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.38
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.33
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.33
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.3
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.25
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.25
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.25
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.24
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.22
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.18
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.17
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.17
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.12
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.1
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.05
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.05
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.03
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.99
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.94
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.92
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.83
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.78
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.72
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.63
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.58
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.58
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.56
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.51
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.49
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.37
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.36
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.33
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.15
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.14
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.13
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.12
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.05
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.04
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.04
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.97
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	97.94
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.92
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.77
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.67
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.66
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.64
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.56
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.51
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.47
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.44
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.36
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.26
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.22
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.2
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.19
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.19
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.13
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.03
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.02
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	96.97
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	96.87
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	96.62
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	96.58
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	96.24
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.85
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.83
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.58
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	95.37
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	95.27
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.2
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	94.97
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.3
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.24
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	94.17
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.05
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	93.94
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	93.93
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	93.88
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	93.87
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	93.65
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	93.04
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.59
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	92.31
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	91.84
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.83
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	91.63
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	91.31
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	91.11
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.6
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	90.55
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	89.39
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	89.11
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	89.11
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	87.82
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	86.9
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	86.52
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	85.91
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	84.21
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	83.01
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	82.16
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	81.98

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.80  E-value=2.2e-19  Score=164.15  Aligned_cols=128  Identities=21%  Similarity=0.285  Sum_probs=102.8

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCccceE
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVFDLV  330 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sFDlV  330 (418)
                      .++++++  .+|||||||+|.++..|++++..++  ++|+++.|++.|+++    +.  +.+.+++.+.+||++++||+|
T Consensus        10 ~~~l~~~--~rVLDiGcG~G~~~~~l~~~~~~v~--gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v   85 (231)
T d1vl5a_          10 IAALKGN--EEVLDVATGGGHVANAFAPFVKKVV--AFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIV   85 (231)
T ss_dssp             HHTCCSC--CEEEEETCTTCHHHHHHGGGSSEEE--EEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEE
T ss_pred             hcCCCCc--CEEEEecccCcHHHHHHHHhCCEEE--EEECCHHHHhhhhhcccccccccccccccccccccccccccccc
Confidence            4567766  4899999999999999999987764  589999999887653    43  345678999999999999999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-h--------------------hHHHHHHHHHHHcCcEE
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-D--------------------EKKSALTRLIERFGYKK  389 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-e--------------------e~~~~~~~l~~~~Gfk~  389 (418)
                      +|..+++|..++.   .+|.|+.|+|||||++++.++.... +                    -..+.+..++++.||+.
T Consensus        86 ~~~~~l~~~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  162 (231)
T d1vl5a_          86 TCRIAAHHFPNPA---SFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFEL  162 (231)
T ss_dssp             EEESCGGGCSCHH---HHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEE
T ss_pred             cccccccccCCHH---HHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEE
Confidence            9999999997765   8999999999999999987653321 0                    01245888999999987


Q ss_pred             EE
Q 037675          390 LK  391 (418)
Q Consensus       390 l~  391 (418)
                      ++
T Consensus       163 ~~  164 (231)
T d1vl5a_         163 EE  164 (231)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.77  E-value=1.3e-18  Score=160.77  Aligned_cols=130  Identities=17%  Similarity=0.226  Sum_probs=103.9

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC--CceeecccCCCCCCCCcc
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL--FPLYLSLDHRFPFYDNVF  327 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl--i~~~~~~~e~LPf~d~sF  327 (418)
                      +-+..++++|.  +|||||||+|.++..|++++..++  ++|+|+.|++.|+++    |+  +.++.++++.+||++++|
T Consensus         8 l~~~~~~~~~~--rILDiGcGtG~~~~~la~~~~~v~--gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f   83 (234)
T d1xxla_           8 MIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQECI--GVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF   83 (234)
T ss_dssp             HHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSSEEE--EEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred             HHHHhCCCCCC--EEEEeCCcCcHHHHHHHHhCCeEE--EEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence            33455788885  899999999999999999976664  589999999877553    43  345668899999999999


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchh---------------------HHHHHHHHHHHcC
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDE---------------------KKSALTRLIERFG  386 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee---------------------~~~~~~~l~~~~G  386 (418)
                      |+|+|..+++|..++.   .++.|+.|+|||||++++.++......                     ..+.+..+++..|
T Consensus        84 D~v~~~~~l~~~~d~~---~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  160 (234)
T d1xxla_          84 DIITCRYAAHHFSDVR---KAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQ  160 (234)
T ss_dssp             EEEEEESCGGGCSCHH---HHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTT
T ss_pred             ceeeeeceeecccCHH---HHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCC
Confidence            9999999999987665   999999999999999988765432210                     1245778889999


Q ss_pred             cEEE
Q 037675          387 YKKL  390 (418)
Q Consensus       387 fk~l  390 (418)
                      |...
T Consensus       161 f~~~  164 (234)
T d1xxla_         161 LAYQ  164 (234)
T ss_dssp             EEEE
T ss_pred             Ccee
Confidence            9653

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=7.3e-19  Score=158.93  Aligned_cols=117  Identities=22%  Similarity=0.353  Sum_probs=98.8

Q ss_pred             eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhHHH
Q 037675          267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLE  346 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le  346 (418)
                      +|||||||+|.++..+++  +.    ++|+|+.|++.++++++ .+..++++.+|+++++||+|+|..+|+|..++.   
T Consensus        39 ~vLDiGcG~G~~~~~~~~--~~----giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~---  108 (208)
T d1vlma_          39 RGVEIGVGTGRFAVPLKI--KI----GVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVDDPE---  108 (208)
T ss_dssp             CEEEETCTTSTTHHHHTC--CE----EEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSSCHH---
T ss_pred             eEEEECCCCcccccccce--EE----EEeCChhhccccccccc-ccccccccccccccccccccccccccccccccc---
Confidence            799999999999988854  22    46999999999999986 778899999999999999999999999997655   


Q ss_pred             HHHHHhhccccCCcEEEEEecccCc----------------h----hHHHHHHHHHHHcCcEEEEEE
Q 037675          347 FLMFDFDRILRAGGLFWLDNFYCAN----------------D----EKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       347 ~~L~Ei~RVLRPGG~~ii~~~~~~~----------------e----e~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      .+|.|+.|+|||||++++..+....                .    -..+++..++++.||+.++..
T Consensus       109 ~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~  175 (208)
T d1vlma_         109 RALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV  175 (208)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             cchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence            8999999999999999998763221                0    013568999999999988743

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.75  E-value=2.8e-18  Score=163.10  Aligned_cols=128  Identities=17%  Similarity=0.247  Sum_probs=103.9

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCccceEE
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNVFDLVH  331 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~sFDlV~  331 (418)
                      +.+|  .+|||||||+|.++.+|+++ +..|+  ++|+++.|++.|+++    |+   +.+..++++++|+++++||+|+
T Consensus        65 l~~~--~~vLDiGcG~G~~~~~la~~~~~~v~--gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~  140 (282)
T d2o57a1          65 LQRQ--AKGLDLGAGYGGAARFLVRKFGVSID--CLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIW  140 (282)
T ss_dssp             CCTT--CEEEEETCTTSHHHHHHHHHHCCEEE--EEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred             CCCC--CEEEEeCCCCcHHHhhhhccCCcEEE--EEeccchhhhhhhcccccccccccccccccccccccccccccchhh
Confidence            5555  49999999999999999987 77765  589999999877664    44   3456689999999999999999


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc----hh--------------HHHHHHHHHHHcCcEEEEEE
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN----DE--------------KKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~----ee--------------~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      +..+++|+.++.   .+|.|+.|+|||||+|++.++....    ..              ..+.+..+++..||+.+.+.
T Consensus       141 ~~~~l~h~~d~~---~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~  217 (282)
T d2o57a1         141 SQDAFLHSPDKL---KVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF  217 (282)
T ss_dssp             EESCGGGCSCHH---HHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ccchhhhccCHH---HHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEE
Confidence            999999997665   8999999999999999998763321    00              12467889999999988765


Q ss_pred             E
Q 037675          394 V  394 (418)
Q Consensus       394 ~  394 (418)
                      -
T Consensus       218 d  218 (282)
T d2o57a1         218 S  218 (282)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=4.1e-18  Score=155.93  Aligned_cols=97  Identities=21%  Similarity=0.299  Sum_probs=86.6

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEec-CcCcCCCChhH
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHAS-SGLDVGGQPEK  344 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~-~~L~~~~~~~~  344 (418)
                      .+|||+|||+|.++..|++.|..++  ++|+|+.|++.|++++....+.++++++||++++||+|+|. .+++|..++. 
T Consensus        44 ~~vLDiGcG~G~~~~~l~~~~~~v~--giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~-  120 (246)
T d2avna1          44 CRVLDLGGGTGKWSLFLQERGFEVV--LVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKD-  120 (246)
T ss_dssp             CEEEEETCTTCHHHHHHHTTTCEEE--EEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHH-
T ss_pred             CEEEEECCCCchhcccccccceEEE--EeecccccccccccccccccccccccccccccccccceeeecchhhhhhhHH-
Confidence            4899999999999999999988765  58999999999999988667778999999999999999986 5788887665 


Q ss_pred             HHHHHHHhhccccCCcEEEEEec
Q 037675          345 LEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       345 le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                        .+|.|+.|+|||||+++++.+
T Consensus       121 --~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         121 --KAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             --HHHHHHHHHEEEEEEEEEEEE
T ss_pred             --HHHHHHHhhcCcCcEEEEEEC
Confidence              899999999999999988765

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.4e-17  Score=154.87  Aligned_cols=133  Identities=17%  Similarity=0.279  Sum_probs=105.8

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCC
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDN  325 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~  325 (418)
                      +.+++.+.+|.  +|||||||+|.++.+|+++ +..++  ++|+|+.|++.++++    |+   +.+..++.+.+ ++++
T Consensus        25 l~~~~~l~pg~--~VLDiGCG~G~~~~~la~~~~~~v~--GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~   99 (245)
T d1nkva_          25 LGRVLRMKPGT--RILDLGSGSGEMLCTWARDHGITGT--GIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANE   99 (245)
T ss_dssp             HHHHTCCCTTC--EEEEETCTTCHHHHHHHHHTCCEEE--EEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSS
T ss_pred             HHHHcCCCCCC--EEEEEcCCCCHHHHHHHHhcCCEEE--EEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccC
Confidence            55566788874  8999999999999999876 77775  589999999887664    55   35667788887 5789


Q ss_pred             ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc----h--------------hHHHHHHHHHHHcCc
Q 037675          326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN----D--------------EKKSALTRLIERFGY  387 (418)
Q Consensus       326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~----e--------------e~~~~~~~l~~~~Gf  387 (418)
                      +||+|+|..+++|+.++.   .+|.|+.|+|||||++++.++.+..    +              .....+..++++.||
T Consensus       100 ~fD~v~~~~~~~~~~d~~---~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~  176 (245)
T d1nkva_         100 KCDVAACVGATWIAGGFA---GAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGY  176 (245)
T ss_dssp             CEEEEEEESCGGGTSSSH---HHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTB
T ss_pred             ceeEEEEEehhhccCCHH---HHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCC
Confidence            999999999999997765   8999999999999999998764321    0              112468889999999


Q ss_pred             EEEEEEE
Q 037675          388 KKLKWVV  394 (418)
Q Consensus       388 k~l~W~~  394 (418)
                      +.+....
T Consensus       177 ~~v~~~~  183 (245)
T d1nkva_         177 DVVEMVL  183 (245)
T ss_dssp             CCCEEEE
T ss_pred             EEEEEEe
Confidence            8776433

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=1.6e-17  Score=149.97  Aligned_cols=99  Identities=15%  Similarity=0.205  Sum_probs=84.6

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      .+|||||||+|.++..|++.+..++  ++|+|+.|++.|+++    +. +..+.++++.+|+++++||+|+|..+++|+.
T Consensus        39 ~~ILDiGcG~G~~~~~la~~~~~v~--giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~  116 (226)
T d1ve3a1          39 GKVLDLACGVGGFSFLLEDYGFEVV--GVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE  116 (226)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEE--EEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred             CEEEEECCCcchhhhhHhhhhcccc--cccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhCC
Confidence            4899999999999999999988765  589999999888764    33 2344578999999999999999999999985


Q ss_pred             ChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          341 QPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      + .++..+|.|+.|+|||||+++|..+
T Consensus       117 ~-~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         117 P-LELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             H-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             h-hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            3 4577899999999999999988754

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1e-16  Score=147.10  Aligned_cols=127  Identities=13%  Similarity=0.104  Sum_probs=101.8

Q ss_pred             CCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHHcC----C--CceeecccCCCCCCCCccceEEecCcCc
Q 037675          265 IRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAARG----L--FPLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~eRG----l--i~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      ..+|||||||+|.++..|++++ ..+.  ++|+|+.|++.|+++.    .  +.++.++++.+++++++||+|++..+++
T Consensus        61 ~~~vLDiGcG~G~~~~~l~~~~~~~v~--~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~  138 (222)
T d2ex4a1          61 TSCALDCGAGIGRITKRLLLPLFREVD--MVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  138 (222)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTCSEEE--EEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCEEEEeccCCCHhhHHHHHhcCCEEE--EeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            4689999999999999987664 3443  5799999999998763    2  2345678899999999999999999999


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEecccCch-----------hHHHHHHHHHHHcCcEEEEEEE
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND-----------EKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e-----------e~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      |..++ .+..++.++.|+|||||++++.+......           ...+.+.+++++.||+.++.+.
T Consensus       139 h~~~~-~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~  205 (222)
T d2ex4a1         139 HLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER  205 (222)
T ss_dssp             GSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred             cchhh-hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence            98654 45689999999999999999987643321           1246789999999999887544

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.67  E-value=1.4e-16  Score=150.36  Aligned_cols=133  Identities=14%  Similarity=0.130  Sum_probs=103.4

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCCccceEEecCc
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDNVFDLVHASSG  335 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~sFDlV~s~~~  335 (418)
                      +......+|||+|||+|.++..|+.++...| .++|+++.|++.|+++.    .+.++.++.+.+++++++||+|++..+
T Consensus        89 l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v-~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~v  167 (254)
T d1xtpa_          89 LPGHGTSRALDCGAGIGRITKNLLTKLYATT-DLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWT  167 (254)
T ss_dssp             STTCCCSEEEEETCTTTHHHHHTHHHHCSEE-EEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCCCCCeEEEecccCChhhHHHHhhcCceE-EEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeecc
Confidence            3434456899999999999999887643222 34799999999998752    234556788999999999999999999


Q ss_pred             CcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-------h-----hHHHHHHHHHHHcCcEEEEEEE
Q 037675          336 LDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-------D-----EKKSALTRLIERFGYKKLKWVV  394 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-------e-----e~~~~~~~l~~~~Gfk~l~W~~  394 (418)
                      ++|+.++ ++..+|.++.|+|||||+++|.+.....       +     ...+.|..++++.||+.++-..
T Consensus       168 l~hl~d~-d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~  237 (254)
T d1xtpa_         168 AIYLTDA-DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF  237 (254)
T ss_dssp             GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred             ccccchh-hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence            9998654 4668999999999999999998763321       1     1246799999999999886543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.65  E-value=4.9e-16  Score=142.92  Aligned_cols=133  Identities=16%  Similarity=0.145  Sum_probs=103.0

Q ss_pred             HHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC--CceeecccCCCCCCCCccc
Q 037675          251 DFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL--FPLYLSLDHRFPFYDNVFD  328 (418)
Q Consensus       251 ~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl--i~~~~~~~e~LPf~d~sFD  328 (418)
                      ++.+...+....+  .+|||||||+|.++..|++++..++  ++|+++.+++.|+++..  +.++.++.+.+++ +++||
T Consensus         9 ~~~~~~~~~~~~~--~~VLDiGcG~G~~~~~l~~~g~~v~--giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD   83 (225)
T d2p7ia1           9 PFMVRAFTPFFRP--GNLLELGSFKGDFTSRLQEHFNDIT--CVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYD   83 (225)
T ss_dssp             HHHHHHHGGGCCS--SCEEEESCTTSHHHHHHTTTCSCEE--EEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEE
T ss_pred             HHHHHHhhhhCCC--CcEEEEeCCCcHHHHHHHHcCCeEE--EEeCcHHHhhhhhccccccccccccccccccc-ccccc
Confidence            3445555554444  3799999999999999999887764  58999999999988743  3556677777775 68999


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhh-ccccCCcEEEEEecccCc--------------------hh---------HHHHH
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFD-RILRAGGLFWLDNFYCAN--------------------DE---------KKSAL  378 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~-RVLRPGG~~ii~~~~~~~--------------------ee---------~~~~~  378 (418)
                      +|+|..+|+|..++.   .+|.++. |+|||||++++..+....                    .+         ..+.+
T Consensus        84 ~I~~~~vleh~~d~~---~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l  160 (225)
T d2p7ia1          84 NIVLTHVLEHIDDPV---ALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTL  160 (225)
T ss_dssp             EEEEESCGGGCSSHH---HHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHH
T ss_pred             cccccceeEecCCHH---HHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHH
Confidence            999999999997765   8899997 899999999998652110                    00         13568


Q ss_pred             HHHHHHcCcEEEE
Q 037675          379 TRLIERFGYKKLK  391 (418)
Q Consensus       379 ~~l~~~~Gfk~l~  391 (418)
                      +.+++++||+.+.
T Consensus       161 ~~~l~~~Gf~i~~  173 (225)
T d2p7ia1         161 ERDASRAGLQVTY  173 (225)
T ss_dssp             HHHHHHTTCEEEE
T ss_pred             HHHHHHCCCEEEE
Confidence            9999999998765

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.64  E-value=2.9e-16  Score=144.85  Aligned_cols=101  Identities=24%  Similarity=0.305  Sum_probs=82.6

Q ss_pred             CCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccceEEec-C
Q 037675          261 GSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFDLVHAS-S  334 (418)
Q Consensus       261 ~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFDlV~s~-~  334 (418)
                      ......+|||||||+|.++..|+++|..++  ++|+|+.|++.|+++    ++ +.+..++++.+|++ ++||+|+|. .
T Consensus        38 ~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~--gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~  114 (251)
T d1wzna1          38 AKREVRRVLDLACGTGIPTLELAERGYEVV--GLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFS  114 (251)
T ss_dssp             CSSCCCEEEEETCTTCHHHHHHHHTTCEEE--EEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSS
T ss_pred             cCCCCCEEEEeCCCCCccchhhcccceEEE--EEeeccccccccccccccccccchheehhhhhcccc-cccchHhhhhh
Confidence            333446899999999999999999988765  589999999987764    43 45667889999986 589999997 5


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      ++++.. ..+...+|.+++|+|||||+++++
T Consensus       115 ~~~~~~-~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1         115 TIMYFD-EEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             GGGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhcCC-hHHHHHHHHHHHHHcCCCcEEEEE
Confidence            666654 456789999999999999999875

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.64  E-value=8.6e-16  Score=140.88  Aligned_cols=118  Identities=15%  Similarity=0.123  Sum_probs=85.7

Q ss_pred             cccCCcHHHHHH---HHc--cCCCCCCeEEEECCccChHHHHHhhc----CcEEEEeccCCCHHhHHHHHHc----CCC-
Q 037675          245 KARGKNDFLIDD---VLA--LGSGGIRIGFDIGGGSGTFAARMAER----NVTVITNTLNVDAPYSEFIAAR----GLF-  310 (418)
Q Consensus       245 ~~~~~y~~~I~~---lL~--l~~g~~r~VLDvGCGtG~faa~La~~----gV~vv~~alD~s~~~l~~a~eR----Gli-  310 (418)
                      +...+|+..+..   ++.  ++++  .+|||+|||+|..+..|++.    +..++  ++|+|+.|++.|+++    +.. 
T Consensus        17 ~~iP~Y~~~~~~i~~~~~~~~~~~--~~vLDlGCGtG~~~~~l~~~~~~~~~~v~--giD~S~~ml~~A~~~~~~~~~~~   92 (225)
T d1im8a_          17 RSVPGYSNIITAIGMLAERFVTAD--SNVYDLGCSRGAATLSARRNINQPNVKII--GIDNSQPMVERCRQHIAAYHSEI   92 (225)
T ss_dssp             HHSTTHHHHHHHHHHHHHHHCCTT--CEEEEESCTTCHHHHHHHHTCCCSSCEEE--EECSCHHHHHHHHHHHHTSCCSS
T ss_pred             hcCCCHHHHHHHHHHHHHHhcCCC--CEEEEeccchhhHHHHHHHhhcCCCCceE--EeCCCHHHHHHHHHHhHhhcccc
Confidence            334467764332   222  3444  48999999999999988863    56664  589999999999874    322 


Q ss_pred             ceeecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          311 PLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       311 ~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ..........+++...+|+|+|+.++|+.. .++...+|.+++|+|||||.+++.++
T Consensus        93 ~~~~~~~d~~~~~~~~~d~i~~~~~l~~~~-~~d~~~~l~~i~~~LkpgG~li~~~~  148 (225)
T d1im8a_          93 PVEILCNDIRHVEIKNASMVILNFTLQFLP-PEDRIALLTKIYEGLNPNGVLVLSEK  148 (225)
T ss_dssp             CEEEECSCTTTCCCCSEEEEEEESCGGGSC-GGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhhccchhhccccccceeeEEeeeccccC-hhhHHHHHHHHHHhCCCCceeecccc
Confidence            222223344456677899999999999874 34566999999999999999999875

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=4.8e-15  Score=143.27  Aligned_cols=134  Identities=17%  Similarity=0.157  Sum_probs=101.1

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHH----cCCCceeecccCCCCCCCCccceEEe
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAA----RGLFPLYLSLDHRFPFYDNVFDLVHA  332 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~e----RGli~~~~~~~e~LPf~d~sFDlV~s  332 (418)
                      +.+++|.  +|||||||.|+++.+++++ |+.++  ++++|+.|++.+++    .|+.....-.....++++++||.|+|
T Consensus        57 l~l~~G~--~VLDiGCG~G~~~~~~a~~~g~~v~--git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~s  132 (291)
T d1kpia_          57 LNLEPGM--TLLDIGCGWGSTMRHAVAEYDVNVI--GLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVS  132 (291)
T ss_dssp             TCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEE--EEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEE
T ss_pred             cCCCCCC--EEEEecCcchHHHHHHHHhcCccee--eccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccceEee
Confidence            4567774  9999999999999999865 88876  47999999876554    46644443344456778999999999


Q ss_pred             cCcCcCCCCh------hHHHHHHHHhhccccCCcEEEEEecccCch----h---------------------------HH
Q 037675          333 SSGLDVGGQP------EKLEFLMFDFDRILRAGGLFWLDNFYCAND----E---------------------------KK  375 (418)
Q Consensus       333 ~~~L~~~~~~------~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e----e---------------------------~~  375 (418)
                      ..+|.|..+.      ...+.++.+++|+|||||.+++.+......    +                           ..
T Consensus       133 ie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~  212 (291)
T d1kpia_         133 LGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRI  212 (291)
T ss_dssp             ESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCH
T ss_pred             chhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCCH
Confidence            9999998653      346799999999999999998876532110    0                           01


Q ss_pred             HHHHHHHHHcCcEEEEEEEc
Q 037675          376 SALTRLIERFGYKKLKWVVG  395 (418)
Q Consensus       376 ~~~~~l~~~~Gfk~l~W~~~  395 (418)
                      .++..+++..||+...|...
T Consensus       213 ~~~~~~~e~~gl~v~~~~~~  232 (291)
T d1kpia_         213 SQVDYYSSNAGWKVERYHRI  232 (291)
T ss_dssp             HHHHHHHHHHTCEEEEEEEC
T ss_pred             HHHHhhhcccccccceeeec
Confidence            45677889999998887654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.60  E-value=6.1e-15  Score=132.74  Aligned_cols=110  Identities=15%  Similarity=0.211  Sum_probs=85.2

Q ss_pred             HHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCC--ceeecccCCCCCCCC
Q 037675          252 FLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLF--PLYLSLDHRFPFYDN  325 (418)
Q Consensus       252 ~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli--~~~~~~~e~LPf~d~  325 (418)
                      ..+...-.+.+|   +|||||||+|.++.+|+++|..++  ++|+++.|++.+++    .|+.  .+...+...+++ ++
T Consensus        21 ~~~~~~~~~~~g---rvLDiGcG~G~~~~~la~~g~~v~--gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~   94 (198)
T d2i6ga1          21 DVLAAAKVVAPG---RTLDLGCGNGRNSLYLAANGYDVT--AWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DG   94 (198)
T ss_dssp             HHHHHHTTSCSC---EEEEETCTTSHHHHHHHHTTCEEE--EEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CC
T ss_pred             HHHHHcccCCCC---cEEEECCCCCHHHHHHHHHhhhhc--cccCcHHHHHHHHHHhhhccccchhhhheecccccc-cc
Confidence            344443224444   799999999999999999998875  58999999987643    4552  334456777765 78


Q ss_pred             ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      +||+|+|..+++|..+ .....++.++.|+|||||++++..+.
T Consensus        95 ~fD~I~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1          95 EYDFILSTVVMMFLEA-QTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             CEEEEEEESCGGGSCT-THHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             cccEEEEeeeeecCCH-HHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            9999999999998854 45678999999999999999887653

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.6e-15  Score=140.31  Aligned_cols=131  Identities=11%  Similarity=0.088  Sum_probs=96.0

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-Cc-----------------------------
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-FP-----------------------------  311 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-i~-----------------------------  311 (418)
                      .+|||+|||+|.++..++..+..-| +++|+|+.|++.|+++    +. ..                             
T Consensus        53 ~~vLDlGcG~G~~~~~~~~~~~~~v-~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (257)
T d2a14a1          53 DTLIDIGSGPTIYQVLAACDSFQDI-TLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAV  131 (257)
T ss_dssp             EEEEESSCTTCCGGGTTGGGTEEEE-EEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHE
T ss_pred             CEEEEECCCCCHhHHHHhccccCcE-EEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhh
Confidence            4899999999999988887765432 4689999999988764    11 00                             


Q ss_pred             --ee----ecccCCCCCCCCccceEEecCcCcCCC-ChhHHHHHHHHhhccccCCcEEEEEecccCc------------h
Q 037675          312 --LY----LSLDHRFPFYDNVFDLVHASSGLDVGG-QPEKLEFLMFDFDRILRAGGLFWLDNFYCAN------------D  372 (418)
Q Consensus       312 --~~----~~~~e~LPf~d~sFDlV~s~~~L~~~~-~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~------------e  372 (418)
                        ..    .......|+++++||+|++..++|+.. ..++...++.++.|+|||||++++.+.....            .
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~  211 (257)
T d2a14a1         132 KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVA  211 (257)
T ss_dssp             EEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCC
T ss_pred             hcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccccC
Confidence              00    011223478899999999999999864 3446778999999999999999998763221            0


Q ss_pred             hHHHHHHHHHHHcCcEEEEEEEccc
Q 037675          373 EKKSALTRLIERFGYKKLKWVVGEK  397 (418)
Q Consensus       373 e~~~~~~~l~~~~Gfk~l~W~~~~k  397 (418)
                      -..+.+..+++.+||+.+..+....
T Consensus       212 ~~~~~~~~~l~~aGf~v~~~~~~~~  236 (257)
T d2a14a1         212 LEKGEVEQAVLDAGFDIEQLLHSPQ  236 (257)
T ss_dssp             CCHHHHHHHHHHTTEEEEEEEEECC
T ss_pred             CCHHHHHHHHHHCCCEEEEEEEecc
Confidence            1246688999999999888755443

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.59  E-value=2.5e-15  Score=139.11  Aligned_cols=98  Identities=15%  Similarity=0.237  Sum_probs=83.2

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccceEEec-CcCcC
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFDLVHAS-SGLDV  338 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFDlV~s~-~~L~~  338 (418)
                      .++|||+|||+|.++..|+++|..++  ++|+|+.|++.|+++    |+ +.++.++...+++ +++||+|+|. .++++
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~g~~v~--GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~  114 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPKFKNTW--AVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFDLITCCLDSTNY  114 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGSSEEE--EECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCEEEEEECTTGGGG
T ss_pred             CCeEEEEeCcCCHHHHHHHHhCCccE--eeccchhhhhhccccccccCccceeeccchhhhcc-cccccccceeeeeeec
Confidence            36899999999999999999998775  589999999988764    43 3556678888876 5689999986 67888


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      ....+++..+|.++.+.|||||.|+++
T Consensus       115 ~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_         115 IIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             CCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            888888899999999999999999864

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=1.3e-15  Score=144.43  Aligned_cols=94  Identities=21%  Similarity=0.308  Sum_probs=79.4

Q ss_pred             CCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccceEEecCcCcC
Q 037675          262 SGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       262 ~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~  338 (418)
                      +.+..+|||+|||+|.++..|++.  ++.++  ++|+|+.|++.|+++.. +.+.+++++++||++++||+|++..++++
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~--giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~  159 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTF--GLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK  159 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEE--EEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEE--EecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH
Confidence            344569999999999999999988  45664  58999999999988753 45667899999999999999999877654


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                                +.|+.|+|||||++++..+
T Consensus       160 ----------~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         160 ----------AEELARVVKPGGWVITATP  178 (268)
T ss_dssp             ----------HHHHHHHEEEEEEEEEEEE
T ss_pred             ----------HHHHHHHhCCCcEEEEEee
Confidence                      3599999999999999876

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.56  E-value=6.1e-15  Score=140.60  Aligned_cols=97  Identities=10%  Similarity=0.015  Sum_probs=80.2

Q ss_pred             CCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccceEEecCcC
Q 037675          265 IRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFDLVHASSGL  336 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFDlV~s~~~L  336 (418)
                      ..+|||+|||+|.++..|++.   +..++  ++|+++.+++.|+++    +. +.+..++++.+|++ ++||+|+|..++
T Consensus        28 ~~~ILDiGcG~G~~~~~la~~~~~~~~v~--giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~~l  104 (281)
T d2gh1a1          28 PVHIVDYGCGYGYLGLVLMPLLPEGSKYT--GIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFL  104 (281)
T ss_dssp             CCEEEEETCTTTHHHHHHTTTSCTTCEEE--EEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCG
T ss_pred             cCEEEEecCcCCHHHHHHHHhCCCCCEEE--EEecchhHhhhhhccccccccccccccccccccccc-CCceEEEEehhh
Confidence            468999999999999999875   45554  479999999988764    32 23445788889885 579999999999


Q ss_pred             cCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          337 DVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       337 ~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +|..++.   .+|.++.|+|||||++++.++
T Consensus       105 ~~~~d~~---~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1         105 LHMTTPE---TMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             GGCSSHH---HHHHHHHHTEEEEEEEEEEEC
T ss_pred             hcCCCHH---HHHHHHHHHcCcCcEEEEEEC
Confidence            9998765   899999999999999988775

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.53  E-value=2.8e-14  Score=136.81  Aligned_cols=103  Identities=20%  Similarity=0.186  Sum_probs=79.4

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc----CCCceeecccCCCCCCCCccceEEec
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR----GLFPLYLSLDHRFPFYDNVFDLVHAS  333 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR----Gli~~~~~~~e~LPf~d~sFDlV~s~  333 (418)
                      .+++|  .+|||||||+|+++.+++++ |+.|+  ++|+|++|++.|+++    |+...+..........+++||.|++.
T Consensus        49 ~l~~g--~~VLDiGCG~G~~a~~~a~~~g~~v~--gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si  124 (280)
T d2fk8a1          49 DLKPG--MTLLDIGCGWGTTMRRAVERFDVNVI--GLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSI  124 (280)
T ss_dssp             CCCTT--CEEEEESCTTSHHHHHHHHHHCCEEE--EEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEE
T ss_pred             CCCCC--CEEEEecCCchHHHHHHHHhCceeEE--EecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHh
Confidence            46666  49999999999999999977 88775  489999999877664    55222221112222346899999999


Q ss_pred             CcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      .+++|...+ ..+.++.++.|+|||||.++|.+
T Consensus       125 ~~~eh~~~~-~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         125 EAFEHFGHE-NYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             SCGGGTCGG-GHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hHHHHhhhh-hHHHHHHHHHhccCCCceEEEEE
Confidence            999998654 46689999999999999998865

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.53  E-value=7e-15  Score=128.98  Aligned_cols=105  Identities=7%  Similarity=-0.078  Sum_probs=83.2

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC------------------CceeecccCC
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL------------------FPLYLSLDHR  319 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl------------------i~~~~~~~e~  319 (418)
                      |.+.+|  .+|||+|||+|.++.+|+++|..|+  ++|+|+.|++.|+++.-                  ..++.++...
T Consensus        16 l~~~~~--~rvLd~GCG~G~~a~~la~~G~~V~--gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~   91 (201)
T d1pjza_          16 LNVVPG--ARVLVPLCGKSQDMSWLSGQGYHVV--GAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA   91 (201)
T ss_dssp             HCCCTT--CEEEETTTCCSHHHHHHHHHCCEEE--EEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred             cCCCCC--CEEEEecCcCCHHHHHHHHcCCceE--eecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence            456666  4999999999999999999998875  58999999999987521                  1233445555


Q ss_pred             CCC-CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          320 FPF-YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       320 LPf-~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ++. ...+||+|++..++++..+ .+...++.++.|+|||||++++..+
T Consensus        92 l~~~~~~~~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~~~  139 (201)
T d1pjza_          92 LTARDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLITL  139 (201)
T ss_dssp             STHHHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             cccccccceeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEEEc
Confidence            553 4578999999999998754 4567899999999999999877665

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.53  E-value=3.6e-14  Score=132.92  Aligned_cols=126  Identities=19%  Similarity=0.154  Sum_probs=89.8

Q ss_pred             CCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHH----HcCC---CceeecccCCCCCCCCccceEEec
Q 037675          263 GGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIA----ARGL---FPLYLSLDHRFPFYDNVFDLVHAS  333 (418)
Q Consensus       263 g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~----eRGl---i~~~~~~~e~LPf~d~sFDlV~s~  333 (418)
                      ...++|||||||+|.++..|+++  ++.++  ++|. +.+++.++    +.|+   +.++.++...  ..+.+||+|++.
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~--~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~--~~~~~~D~v~~~  153 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSAT--VLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE--PLPRKADAIILS  153 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEE--EEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS--CCSSCEEEEEEE
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEE--EccC-HHHHHHHHHHHHHhhcccchhhccccchh--hcccchhheeec
Confidence            34579999999999999999987  35554  4676 45665544    3454   2344454432  234579999999


Q ss_pred             CcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch----------------------hHHHHHHHHHHHcCcEEEE
Q 037675          334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND----------------------EKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e----------------------e~~~~~~~l~~~~Gfk~l~  391 (418)
                      .+||+|.+. ....+|.++.|+|||||+++|.+.....+                      ...++|..+++++||+.++
T Consensus       154 ~vlh~~~d~-~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~  232 (253)
T d1tw3a2         154 FVLLNWPDH-DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEE  232 (253)
T ss_dssp             SCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred             cccccCCch-hhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEE
Confidence            999999654 34578999999999999998877532110                      0236789999999999876


Q ss_pred             EEE
Q 037675          392 WVV  394 (418)
Q Consensus       392 W~~  394 (418)
                      ...
T Consensus       233 v~~  235 (253)
T d1tw3a2         233 VRQ  235 (253)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.53  E-value=4.4e-14  Score=136.01  Aligned_cols=129  Identities=18%  Similarity=0.238  Sum_probs=94.7

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc----CCCce---eecccCCCCCCCCccce
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR----GLFPL---YLSLDHRFPFYDNVFDL  329 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR----Gli~~---~~~~~e~LPf~d~sFDl  329 (418)
                      +.+++|  .+|||||||.|+++.++++. |+.|+  ++++|+.|++.|.++    |+...   ...+...+   +++||.
T Consensus        58 l~l~~G--~~VLDiGCG~G~~a~~~a~~~g~~v~--git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~---~~~fD~  130 (285)
T d1kpga_          58 LGLQPG--MTLLDVGCGWGATMMRAVEKYDVNVV--GLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF---DEPVDR  130 (285)
T ss_dssp             TTCCTT--CEEEEETCTTSHHHHHHHHHHCCEEE--EEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC---CCCCSE
T ss_pred             cCCCCC--CEEEEecCcchHHHHHHHhcCCcceE--EEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc---cccccc
Confidence            346666  49999999999999998876 88886  479999999877654    44332   23344444   578999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch------------h-------------------HHHHH
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND------------E-------------------KKSAL  378 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e------------e-------------------~~~~~  378 (418)
                      |++..++.|...+ ....++.++.|+|||||.+++.+.....+            .                   ....+
T Consensus       131 i~si~~~eh~~~~-~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~  209 (285)
T d1kpga_         131 IVSIGAFEHFGHE-RYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMV  209 (285)
T ss_dssp             EEEESCGGGTCTT-THHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred             eeeehhhhhcCch-hHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhH
Confidence            9999999998653 34589999999999999998866531110            0                   01346


Q ss_pred             HHHHHHcCcEEEEEEE
Q 037675          379 TRLIERFGYKKLKWVV  394 (418)
Q Consensus       379 ~~l~~~~Gfk~l~W~~  394 (418)
                      ..+++..||+..+|..
T Consensus       210 ~~~~e~agf~v~~~~~  225 (285)
T d1kpga_         210 QECASANGFTVTRVQS  225 (285)
T ss_dssp             HHHHHTTTCEEEEEEE
T ss_pred             HHHHHHhchhhccccc
Confidence            6788999999888655

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.52  E-value=7.8e-15  Score=136.96  Aligned_cols=103  Identities=16%  Similarity=0.199  Sum_probs=82.0

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCC-CCCccceE
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPF-YDNVFDLV  330 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf-~d~sFDlV  330 (418)
                      ++++  .+|||+|||+|..+..+++.+. .++  ++|+|+.|++.|++|    +.   +.+..+++...++ .+++||+|
T Consensus        22 ~~~~--~~VLDlGCG~G~~~~~~~~~~~~~v~--GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V   97 (252)
T d1ri5a_          22 TKRG--DSVLDLGCGKGGDLLKYERAGIGEYY--GVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVI   97 (252)
T ss_dssp             CCTT--CEEEEETCTTTTTHHHHHHHTCSEEE--EEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred             CCCc--CEEEEecccCcHHHHHHHHcCCCeEE--EecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEE
Confidence            3444  4899999999999999998875 454  589999999998775    22   2334567766666 47799999


Q ss_pred             EecCcCcCC-CChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          331 HASSGLDVG-GQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       331 ~s~~~L~~~-~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +|..++|+. .+.+.+..++.++.|+|||||+|+++.
T Consensus        98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~  134 (252)
T d1ri5a_          98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  134 (252)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence            999999985 455677899999999999999998863

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.52  E-value=3.3e-14  Score=132.79  Aligned_cols=145  Identities=14%  Similarity=0.087  Sum_probs=100.9

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHc----CCCceee-cccCCCCCCCCccceEE
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAAR----GLFPLYL-SLDHRFPFYDNVFDLVH  331 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eR----Gli~~~~-~~~e~LPf~d~sFDlV~  331 (418)
                      ++++|  .+|||+|||+|.++..|++.+  -.|  .++|+|+.|++.+.++    +.+..+. +.....++.+..+|+++
T Consensus        71 ~ikpG--~~VLDlGcGsG~~~~~la~~~~~g~V--~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~  146 (230)
T d1g8sa_          71 PIKRD--SKILYLGASAGTTPSHVADIADKGIV--YAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDV  146 (230)
T ss_dssp             CCCTT--CEEEEESCCSSHHHHHHHHHTTTSEE--EEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred             CCCCC--CEEEEeCEEcCHHHHHHHHhCCCCEE--EEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEE
Confidence            35666  499999999999999999873  233  4689999999877664    3222333 34444456788888888


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc------hhHHHHHHHHHHHcCcEEEEEEEcccCCCCccce
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN------DEKKSALTRLIERFGYKKLKWVVGEKGETGKSEV  405 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~------ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~  405 (418)
                      +...+++..+   .+.++.++.|+|||||++++.......      +...++..+.++..||+.+.-.....  -.+++.
T Consensus       147 i~~~~~~~~~---~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL~p--y~~~H~  221 (230)
T d1g8sa_         147 IYEDVAQPNQ---AEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEP--FEKDHV  221 (230)
T ss_dssp             EEECCCSTTH---HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECTT--TSTTEE
T ss_pred             eeccccchHH---HHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCC--CcCCeE
Confidence            7777776643   448899999999999999887653321      23335567788899998875322111  145677


Q ss_pred             EEEEEEE
Q 037675          406 YLSAVLQ  412 (418)
Q Consensus       406 ~l~Ai~q  412 (418)
                      .+.++|+
T Consensus       222 ~vvg~y~  228 (230)
T d1g8sa_         222 MFVGIWE  228 (230)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            7777764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.5e-14  Score=128.95  Aligned_cols=135  Identities=13%  Similarity=0.020  Sum_probs=97.6

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-----------------------
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-----------------------  309 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-----------------------  309 (418)
                      .+.+.+.+.++  .+|||+|||+|..+.+|+++|..|+  ++|+|+.+++.++++.-                       
T Consensus        36 ~~~~~l~~~~~--~rvLd~GCG~G~~a~~LA~~G~~V~--gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (229)
T d2bzga1          36 HLDTFLKGKSG--LRVFFPLCGKAVEMKWFADRGHSVV--GVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN  111 (229)
T ss_dssp             HHHHHHTTCCS--CEEEETTCTTCTHHHHHHHTTCEEE--EECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             HHHHhcCCCCC--CEEEEeCCCCcHHHHHHHhCCCcEE--EEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCc
Confidence            34555566555  4899999999999999999998875  58999999998876532                       


Q ss_pred             CceeecccCCC-CCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCch--------hHHHHHHH
Q 037675          310 FPLYLSLDHRF-PFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAND--------EKKSALTR  380 (418)
Q Consensus       310 i~~~~~~~e~L-Pf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~e--------e~~~~~~~  380 (418)
                      +.++.++...+ +..++.||+|+...++++..+ ...+.++.++.|+|||||++++..+.....        -..+++..
T Consensus       112 v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~-~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~  190 (229)
T d2bzga1         112 ISLYCCSIFDLPRTNIGKFDMIWDRGALVAINP-GDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIER  190 (229)
T ss_dssp             EEEEESCGGGGGGSCCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHH
T ss_pred             EEEEEcchhhccccccCceeEEEEEEEEEeccc-hhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHH
Confidence            12233344444 466889999999999998854 456799999999999999988877643221        12345777


Q ss_pred             HHHHcCcEEEEEE
Q 037675          381 LIERFGYKKLKWV  393 (418)
Q Consensus       381 l~~~~Gfk~l~W~  393 (418)
                      +++. +|....++
T Consensus       191 lf~~-~~~i~~le  202 (229)
T d2bzga1         191 LFGK-ICNIRCLE  202 (229)
T ss_dssp             HHTT-TEEEEEEE
T ss_pred             HhcC-CCEEEEEE
Confidence            7765 46543343

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.4e-13  Score=129.81  Aligned_cols=147  Identities=15%  Similarity=0.027  Sum_probs=101.0

Q ss_pred             CCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc--C---CCce--------------------------
Q 037675          265 IRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR--G---LFPL--------------------------  312 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR--G---li~~--------------------------  312 (418)
                      .++|||+|||+|.+....+.. ...++  ++|.|+.|++.++++  .   ....                          
T Consensus        55 g~~vLDiGcG~g~~~~~~~~~~~~~v~--~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          55 GRTLIDIGSGPTVYQLLSACSHFEDIT--MTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             CSEEEEETCTTCCGGGTTGGGGCSEEE--EECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CcEEEEeccCCCHHHHHHhcccCCeEE--EEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            459999999999887666655 33454  479999999987653  1   1000                          


Q ss_pred             -----ee-c-----ccCCCCCCCCccceEEecCcCcCCC-ChhHHHHHHHHhhccccCCcEEEEEecccCc---------
Q 037675          313 -----YL-S-----LDHRFPFYDNVFDLVHASSGLDVGG-QPEKLEFLMFDFDRILRAGGLFWLDNFYCAN---------  371 (418)
Q Consensus       313 -----~~-~-----~~e~LPf~d~sFDlV~s~~~L~~~~-~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~---------  371 (418)
                           .. +     .....++++++||+|++..++++.. +.+++..++.++.|+|||||+|++.+.....         
T Consensus       133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~  212 (263)
T d2g72a1         133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL  212 (263)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred             hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCccc
Confidence                 00 1     1123456678999999999999864 4567889999999999999999887752211         


Q ss_pred             ---hhHHHHHHHHHHHcCcEEEEEEEcccCC---C--CccceEEEEEEEc
Q 037675          372 ---DEKKSALTRLIERFGYKKLKWVVGEKGE---T--GKSEVYLSAVLQK  413 (418)
Q Consensus       372 ---ee~~~~~~~l~~~~Gfk~l~W~~~~k~d---~--~~~e~~l~Ai~qK  413 (418)
                         .-..+++.++++..||+.+..++.....   .  ..-+.++.++.||
T Consensus       213 ~~~~~t~e~v~~~l~~aGf~v~~~~~~~~~~~~~~~~~d~~~~~~~~ArK  262 (263)
T d2g72a1         213 TVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQK  262 (263)
T ss_dssp             ECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEE
T ss_pred             ccCCCCHHHHHHHHHHCCCeEEEEEEeeccCcccccccccceEEEEEEEe
Confidence               1134679999999999988765543222   1  1224566777777

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.1e-13  Score=126.43  Aligned_cols=122  Identities=15%  Similarity=0.102  Sum_probs=87.2

Q ss_pred             eEEEECCccChHHHHHhhc------CcEEEEeccCCCHHhHHHHHHc--C---CCcee----eccc------CCCCCCCC
Q 037675          267 IGFDIGGGSGTFAARMAER------NVTVITNTLNVDAPYSEFIAAR--G---LFPLY----LSLD------HRFPFYDN  325 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~------gV~vv~~alD~s~~~l~~a~eR--G---li~~~----~~~~------e~LPf~d~  325 (418)
                      +|||||||+|.++..|++.      ++.+...++|+++.|++.+.++  .   +....    ....      ...+++++
T Consensus        43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (280)
T d1jqea_          43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ  122 (280)
T ss_dssp             EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred             eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence            6999999999998777543      3333334689999999988775  1   11111    1111      13467899


Q ss_pred             ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc---------------h-----hHHHHHHHHHHHc
Q 037675          326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN---------------D-----EKKSALTRLIERF  385 (418)
Q Consensus       326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~---------------e-----e~~~~~~~l~~~~  385 (418)
                      +||+|+|.++++|..++.   .+|.++.|+|||||+++|..+....               +     -..+.+..++++.
T Consensus       123 ~fD~I~~~~~l~~~~d~~---~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  199 (280)
T d1jqea_         123 KWDFIHMIQMLYYVKDIP---ATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL  199 (280)
T ss_dssp             CEEEEEEESCGGGCSCHH---HHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHHHH
T ss_pred             ceeEEEEccceecCCCHH---HHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHC
Confidence            999999999999997665   8999999999999999887542111               0     0124588899999


Q ss_pred             CcEEEE
Q 037675          386 GYKKLK  391 (418)
Q Consensus       386 Gfk~l~  391 (418)
                      ||+...
T Consensus       200 G~~~~~  205 (280)
T d1jqea_         200 GLKYEC  205 (280)
T ss_dssp             TCCEEE
T ss_pred             CCceEE
Confidence            997544

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.43  E-value=4.3e-13  Score=127.08  Aligned_cols=132  Identities=17%  Similarity=0.201  Sum_probs=95.7

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCC-ceeecccCCCCCCCCccceEEecC
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLF-PLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli-~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      ..+|  .+|||+|||+|.++..+++.|..++  ++|+++.+++.|++    .|+. .+..++... ++++++||+|+++.
T Consensus       118 ~~~g--~~VLDiGcGsG~l~i~aa~~g~~V~--gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani  192 (254)
T d2nxca1         118 LRPG--DKVLDLGTGSGVLAIAAEKLGGKAL--GVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANL  192 (254)
T ss_dssp             CCTT--CEEEEETCTTSHHHHHHHHTTCEEE--EEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEEC
T ss_pred             cCcc--CEEEEcccchhHHHHHHHhcCCEEE--EEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhcc
Confidence            3455  4899999999999999999998764  58999999987765    4552 233444333 45678999999964


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEEEEEc
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQK  413 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qK  413 (418)
                      ..+      .+..++.++.|+|||||+++++++....   .+.+.+.++..||+.++-..       +++ |...+++|
T Consensus       193 ~~~------~l~~l~~~~~~~LkpGG~lilSgil~~~---~~~v~~~~~~~Gf~~~~~~~-------~~~-Wv~l~~~r  254 (254)
T d2nxca1         193 YAE------LHAALAPRYREALVPGGRALLTGILKDR---APLVREAMAGAGFRPLEEAA-------EGE-WVLLAYGR  254 (254)
T ss_dssp             CHH------HHHHHHHHHHHHEEEEEEEEEEEEEGGG---HHHHHHHHHHTTCEEEEEEE-------ETT-EEEEEEEC
T ss_pred             ccc------cHHHHHHHHHHhcCCCcEEEEEecchhh---HHHHHHHHHHCCCEEEEEEE-------ECC-EEEEEEeC
Confidence            433      3457889999999999999999875432   23477788999998775322       235 44556766

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.4e-14  Score=130.00  Aligned_cols=120  Identities=13%  Similarity=0.077  Sum_probs=82.5

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-----Cceeeccc--CCCCCCCCccceEEe-----c
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-----FPLYLSLD--HRFPFYDNVFDLVHA-----S  333 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-----i~~~~~~~--e~LPf~d~sFDlV~s-----~  333 (418)
                      ++|||||||+|.++.++++++..-+ +++|+++.|++.|+++.-     +..+.+++  ...++++++||.|+.     .
T Consensus        55 ~~VLdIGcG~G~~a~~~a~~~~~~v-~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~  133 (229)
T d1zx0a1          55 GRVLEVGFGMAIAASKVQEAPIDEH-WIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLS  133 (229)
T ss_dssp             EEEEEECCTTSHHHHHHHTSCEEEE-EEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCB
T ss_pred             CeEEEeeccchHHHHHHHHcCCCeE-EEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccccc
Confidence            4899999999999999998764332 358999999999987632     11222222  234677889999874     3


Q ss_pred             CcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-----------hhHHHHHHHHHHHcCcEE
Q 037675          334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-----------DEKKSALTRLIERFGYKK  389 (418)
Q Consensus       334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-----------ee~~~~~~~l~~~~Gfk~  389 (418)
                      ..++++   .+.+.++.|+.|+|||||+|++.+.....           ....+.+...+.+.||+.
T Consensus       134 ~~~~~~---~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agF~~  197 (229)
T d1zx0a1         134 EETWHT---HQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR  197 (229)
T ss_dssp             GGGTTT---HHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred             cccccc---cCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHHHHHHHCCCee
Confidence            444444   34558999999999999999875542111           112344566777889964

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=1.5e-13  Score=130.84  Aligned_cols=112  Identities=14%  Similarity=0.206  Sum_probs=80.2

Q ss_pred             cHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCCce----ee--ccc--
Q 037675          250 NDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLFPL----YL--SLD--  317 (418)
Q Consensus       250 y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli~~----~~--~~~--  317 (418)
                      |...+.+++....+  ++|||+|||+|.++..|+++|..|+  ++|+|+.|++.|+++    +....    ..  ...  
T Consensus        44 ~~~~l~~~l~~~~~--~~vLD~GcG~G~~~~~la~~g~~v~--gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (292)
T d1xvaa_          44 YKAWLLGLLRQHGC--HRVLDVACGTGVDSIMLVEEGFSVT--SVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  119 (292)
T ss_dssp             HHHHHHHHHHHTTC--CEEEESSCTTSHHHHHHHHTTCEEE--EEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             HHHHHHHHhhhcCC--CEEEEecCCCcHHHHHHHHcCCeee--eccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence            33445555555544  5899999999999999999998765  589999999988653    22111    11  111  


Q ss_pred             --CCCCCCCCccceEEec-CcCcCCCC----hhHHHHHHHHhhccccCCcEEEEEe
Q 037675          318 --HRFPFYDNVFDLVHAS-SGLDVGGQ----PEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       318 --e~LPf~d~sFDlV~s~-~~L~~~~~----~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                        ..+| +.++||+|+|. .+++|..+    ..+...+|.++.|+|||||+|+++.
T Consensus       120 ~~~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         120 LDKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             HHHHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence              1233 35689999986 57777644    2457789999999999999999864

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.38  E-value=1.5e-12  Score=122.47  Aligned_cols=125  Identities=19%  Similarity=0.143  Sum_probs=88.9

Q ss_pred             CCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHH----HcCCCc---eeecccCCCCCCCCccceEEecC
Q 037675          264 GIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIA----ARGLFP---LYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~----eRGli~---~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      ..++|||||||+|.++..|+++  +..++  ++|. +.+++.++    +.|+..   +..++... |. +..||+|++.+
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~--~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~-p~~~D~v~~~~  155 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGT--LVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL-PVTADVVLLSF  155 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEE--EEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-SCCEEEEEEES
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEE--EecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-cc-cccchhhhccc
Confidence            4579999999999999999988  45554  4686 56665544    345422   22233322 34 34699999999


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc-----------------------hhHHHHHHHHHHHcCcEEEE
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-----------------------DEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-----------------------ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      +||+|.+. ....+|.++.|+|||||.++|.++....                       +...++|..+++++||+.++
T Consensus       156 vLh~~~d~-~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~  234 (256)
T d1qzza2         156 VLLNWSDE-DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS  234 (256)
T ss_dssp             CGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred             cccccCcH-HHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeE
Confidence            99999754 3457899999999999999888753211                       00136799999999999887


Q ss_pred             EEE
Q 037675          392 WVV  394 (418)
Q Consensus       392 W~~  394 (418)
                      -..
T Consensus       235 ~~~  237 (256)
T d1qzza2         235 ERT  237 (256)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.33  E-value=3.9e-12  Score=116.74  Aligned_cols=102  Identities=16%  Similarity=0.111  Sum_probs=74.1

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc-C-cEEEEeccCCCHHhHHHHHH----cCCCceeecccCCCCCCCCccceEEe
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER-N-VTVITNTLNVDAPYSEFIAA----RGLFPLYLSLDHRFPFYDNVFDLVHA  332 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~-g-V~vv~~alD~s~~~l~~a~e----RGli~~~~~~~e~LPf~d~sFDlV~s  332 (418)
                      ++++|.  +|||+|||+|.++.+|++. + -.+  +++|+++.|++.+.+    ++.+..+.+++...+.++..+|.|..
T Consensus        53 ~lkpg~--~VLDlGcG~G~~~~~la~~v~~g~V--~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~  128 (209)
T d1nt2a_          53 KLRGDE--RVLYLGAASGTTVSHLADIVDEGII--YAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDL  128 (209)
T ss_dssp             CCCSSC--EEEEETCTTSHHHHHHHHHTTTSEE--EEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred             CCCCCC--EEEEeCCcCCHHHHHHHHhccCCeE--EEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEE
Confidence            466664  9999999999999999986 2 344  468999999986544    45545566677776666666666544


Q ss_pred             c-CcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          333 S-SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       333 ~-~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      . +.+.++.   ....++.|+.|+|||||++++...
T Consensus       129 v~~~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~~  161 (209)
T d1nt2a_         129 IYQDIAQKN---QIEILKANAEFFLKEKGEVVIMVK  161 (209)
T ss_dssp             EEECCCSTT---HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEecccChh---hHHHHHHHHHHHhccCCeEEEEEE
Confidence            2 3344443   334899999999999999988764

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.33  E-value=1.7e-12  Score=116.02  Aligned_cols=119  Identities=16%  Similarity=0.200  Sum_probs=88.7

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCccce
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNVFDL  329 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~sFDl  329 (418)
                      .+.+.+|  .+|||+|||+|.++..|+..+-.++  ++|.++.+++.|++    .|+   +.++++++..+++....||+
T Consensus        28 ~l~~~~g--~~VLDiGcGsG~~s~~lA~~~~~V~--avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~  103 (186)
T d1l3ia_          28 LAEPGKN--DVAVDVGCGTGGVTLELAGRVRRVY--AIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDI  103 (186)
T ss_dssp             HHCCCTT--CEEEEESCTTSHHHHHHHTTSSEEE--EEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEE
T ss_pred             hcCCCCC--CEEEEEECCeEcccccccccceEEE--EecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCE
Confidence            3456655  4899999999999999998876664  58999999987765    354   24556787778888899999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcE
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYK  388 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk  388 (418)
                      |++....++      ++.++.++.+.|||||++++.....   +......+.++..||.
T Consensus       104 v~~~~~~~~------~~~~~~~~~~~LkpgG~lvi~~~~~---e~~~~~~~~l~~~~~~  153 (186)
T d1l3ia_         104 AVVGGSGGE------LQEILRIIKDKLKPGGRIIVTAILL---ETKFEAMECLRDLGFD  153 (186)
T ss_dssp             EEESCCTTC------HHHHHHHHHHTEEEEEEEEEEECBH---HHHHHHHHHHHHTTCC
T ss_pred             EEEeCcccc------chHHHHHHHHHhCcCCEEEEEeecc---ccHHHHHHHHHHcCCC
Confidence            999765543      2478999999999999998765422   2223355667777773

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.30  E-value=5.3e-12  Score=113.34  Aligned_cols=103  Identities=14%  Similarity=0.210  Sum_probs=77.7

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC----CceeecccCCCCCCCCccce
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL----FPLYLSLDHRFPFYDNVFDL  329 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl----i~~~~~~~e~LPf~d~sFDl  329 (418)
                      +.+.++  .+|||+|||+|.++..|++.+-.+.  ++|+++.+++.++++    ++    +.+..++... ++++++||+
T Consensus        48 l~~~~~--~~VLDiGcG~G~~~~~la~~~~~v~--~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~  122 (194)
T d1dusa_          48 VVVDKD--DDILDLGCGYGVIGIALADEVKSTT--MADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNK  122 (194)
T ss_dssp             CCCCTT--CEEEEETCTTSHHHHHHGGGSSEEE--EEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEE
T ss_pred             CCcCCC--CeEEEEeecCChhHHHHHhhccccc--eeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceE
Confidence            344444  5999999999999999998876553  479999999887653    33    2333455544 567899999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      |++...+++..  ...+.++.++.|+|||||.+++...
T Consensus       123 Ii~~~p~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~  158 (194)
T d1dusa_         123 IITNPPIRAGK--EVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             EEECCCSTTCH--HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEcccEEecc--hhhhhHHHHHHHhcCcCcEEEEEEe
Confidence            99988877553  3356899999999999999987644

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.25  E-value=8.3e-12  Score=118.86  Aligned_cols=125  Identities=16%  Similarity=0.093  Sum_probs=89.5

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHc------CC---CceeecccCCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAAR------GL---FPLYLSLDHRF  320 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eR------Gl---i~~~~~~~e~L  320 (418)
                      +|-..+.+.+|.  +|||+|||+|+++.+|+.. +  -.+  .++|.++.+++.|+++      +.   +.+.+++....
T Consensus        87 ~Ii~~l~i~PG~--~VLE~G~GsG~lt~~La~~vgp~G~V--~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~  162 (264)
T d1i9ga_          87 QIVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAGQV--ISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS  162 (264)
T ss_dssp             HHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEE--EEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred             HHHHHhCCCCCC--EEEecCcCCcHHHHHHHHhhCCCcEE--EEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence            344455677774  9999999999999999876 3  233  3479999999988762      11   23345677788


Q ss_pred             CCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          321 PFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       321 Pf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      ++++++||.|+.     +..++.   .++.++.|+|||||.+++-.+..  ++..+.+..+-+..||..++
T Consensus       163 ~~~~~~fDaV~l-----dlp~P~---~~l~~~~~~LkpGG~lv~~~P~i--~Qv~~~~~~l~~~~~f~~i~  223 (264)
T d1i9ga_         163 ELPDGSVDRAVL-----DMLAPW---EVLDAVSRLLVAGGVLMVYVATV--TQLSRIVEALRAKQCWTEPR  223 (264)
T ss_dssp             CCCTTCEEEEEE-----ESSCGG---GGHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHHSSBCCCE
T ss_pred             cccCCCcceEEE-----ecCCHH---HHHHHHHhccCCCCEEEEEeCcc--ChHHHHHHHHHHcCCeecce
Confidence            999999999986     233443   78889999999999987655432  34455566665667786543

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.25  E-value=9.7e-12  Score=113.86  Aligned_cols=118  Identities=14%  Similarity=0.171  Sum_probs=82.9

Q ss_pred             CeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHH----HHcCCCc--eeecccCCCC--CCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFI----AARGLFP--LYLSLDHRFP--FYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a----~eRGli~--~~~~~~e~LP--f~d~sFDlV~s~~~  335 (418)
                      ..|||||||+|.++..|++++  ..++  ++|+++.+++.+    .+.|+..  ++.+++..+.  ++++++|.|+....
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~i--GiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYI--GIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  108 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEE--EECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEE--EeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence            479999999999999999874  5554  589999988654    4456633  3456777765  88999999998776


Q ss_pred             CcCCCChhH-----HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcE
Q 037675          336 LDVGGQPEK-----LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYK  388 (418)
Q Consensus       336 L~~~~~~~~-----le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk  388 (418)
                      ..+...+..     -..+|.++.|+|||||.|+|..   ..+...+...+.+...++.
T Consensus       109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T---D~~~y~~~~~~~~~~~~~~  163 (204)
T d2fcaa1         109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT---DNRGLFEYSLKSFSEYGLL  163 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE---SCHHHHHHHHHHHHHHTCE
T ss_pred             cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE---CChHHHHHHHHHHHHCCCc
Confidence            655432210     1268999999999999997753   2223333345556665654

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.25  E-value=1.9e-11  Score=115.35  Aligned_cols=122  Identities=16%  Similarity=0.102  Sum_probs=84.6

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHc----CC---CceeecccCCCCCCCCc
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHRFPFYDNV  326 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~LPf~d~s  326 (418)
                      .+.+.+|.  +|||+|||+|.++.+|++. +  -.+  +++|.++.+++.|+++    +.   +.+.+++.... +++++
T Consensus        80 ~l~i~pG~--rVLEiG~GsG~lt~~la~~v~~~g~V--~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~  154 (250)
T d1yb2a1          80 RCGLRPGM--DILEVGVGSGNMSSYILYALNGKGTL--TVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQM  154 (250)
T ss_dssp             -CCCCTTC--EEEEECCTTSHHHHHHHHHHTTSSEE--EEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCC
T ss_pred             HcCCCCcC--EEEEeeeeCcHHHHHHHHHhCCCcEE--EEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccce
Confidence            34577774  9999999999999999875 3  233  3479999999988764    21   23445555554 56889


Q ss_pred             cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE-EEE
Q 037675          327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK-WVV  394 (418)
Q Consensus       327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~-W~~  394 (418)
                      ||.|+..     ..++.   .++.++.|+|||||++++..+..  ++..+ ..+.+++.||..++ +++
T Consensus       155 fD~V~ld-----~p~p~---~~l~~~~~~LKpGG~lv~~~P~i--~Qv~~-~~~~l~~~gf~~i~~~E~  212 (250)
T d1yb2a1         155 YDAVIAD-----IPDPW---NHVQKIASMMKPGSVATFYLPNF--DQSEK-TVLSLSASGMHHLETVEL  212 (250)
T ss_dssp             EEEEEEC-----CSCGG---GSHHHHHHTEEEEEEEEEEESSH--HHHHH-HHHHSGGGTEEEEEEEEE
T ss_pred             eeeeeec-----CCchH---HHHHHHHHhcCCCceEEEEeCCc--ChHHH-HHHHHHHCCCceeEEEEE
Confidence            9999863     22333   67889999999999997765532  33333 44556778998765 444

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=9.4e-12  Score=119.55  Aligned_cols=112  Identities=13%  Similarity=0.095  Sum_probs=82.8

Q ss_pred             cHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHH---HHHHcCC---CceeecccCCCCCC
Q 037675          250 NDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSE---FIAARGL---FPLYLSLDHRFPFY  323 (418)
Q Consensus       250 y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~---~a~eRGl---i~~~~~~~e~LPf~  323 (418)
                      |...|.+...+.+|  .+|||||||+|.++..+++.|...| +++|.++.+..   .+.+.+.   +.+..++.+.++++
T Consensus        23 y~~ai~~~~~~~~~--~~VLDiGcG~G~lsl~aa~~Ga~~V-~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~   99 (311)
T d2fyta1          23 YRDFIYQNPHIFKD--KVVLDVGCGTGILSMFAAKAGAKKV-LGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLP   99 (311)
T ss_dssp             HHHHHHHCGGGTTT--CEEEEETCTTSHHHHHHHHTTCSEE-EEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCS
T ss_pred             HHHHHHhccccCCc--CEEEEECCCCCHHHHHHHHcCCCEE-EEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCc
Confidence            44445443344445  4899999999999999999985433 46799887653   3344454   34556789999999


Q ss_pred             CCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEE
Q 037675          324 DNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWL  364 (418)
Q Consensus       324 d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii  364 (418)
                      ++.||+|++....+.......++.++...+|+|||||+++-
T Consensus       100 ~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         100 VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             cccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            99999999977666655545577888889999999998864

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=9.1e-12  Score=120.74  Aligned_cols=110  Identities=15%  Similarity=0.162  Sum_probs=79.4

Q ss_pred             cHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHH----HHHHcCC---CceeecccCCCCC
Q 037675          250 NDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSE----FIAARGL---FPLYLSLDHRFPF  322 (418)
Q Consensus       250 y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~----~a~eRGl---i~~~~~~~e~LPf  322 (418)
                      |...|.+.+.+.+|  .+|||||||+|.++..+++.|...| .++|.++ +++    .+++.|.   +.++.++.+.+++
T Consensus        26 y~~aI~~~~~~~~~--~~VLDlGcGtG~ls~~aa~~Ga~~V-~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~  101 (328)
T d1g6q1_          26 YRNAIIQNKDLFKD--KIVLDVGCGTGILSMFAAKHGAKHV-IGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL  101 (328)
T ss_dssp             HHHHHHHHHHHHTT--CEEEEETCTTSHHHHHHHHTCCSEE-EEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC
T ss_pred             HHHHHHhccccCCc--CEEEEeCCCCCHHHHHHHHhCCCEE-EEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC
Confidence            44444443334345  4899999999999999999985332 3578775 333    3344555   3345678899999


Q ss_pred             CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEE
Q 037675          323 YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFW  363 (418)
Q Consensus       323 ~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~i  363 (418)
                      ++++||+|++..+.+.......++.++.+++|+|||||.++
T Consensus       102 ~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         102 PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             cccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            99999999997666655444556789999999999999874

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=1.1e-11  Score=119.69  Aligned_cols=97  Identities=13%  Similarity=0.161  Sum_probs=74.4

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhH---HHHHHcCC---CceeecccCCCCCCCCccceEEecCcCcCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYS---EFIAARGL---FPLYLSLDHRFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l---~~a~eRGl---i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      .+|||||||+|.++..+++.|..-| +++|.++.+.   +.+...++   +.++.++.+.++++.++||+|++..+.+..
T Consensus        35 ~~VLDiGcG~G~ls~~aa~~Ga~~V-~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l  113 (316)
T d1oria_          35 KVVLDVGSGTGILCMFAAKAGARKV-IGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCL  113 (316)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCSEE-EEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTB
T ss_pred             CEEEEEecCCcHHHHHHHHhCCCEE-EEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeeee
Confidence            4899999999999999999874322 3568775433   23444555   345568899999999999999997666655


Q ss_pred             CChhHHHHHHHHhhccccCCcEEE
Q 037675          340 GQPEKLEFLMFDFDRILRAGGLFW  363 (418)
Q Consensus       340 ~~~~~le~~L~Ei~RVLRPGG~~i  363 (418)
                      .....++.++.+++|+|||||.++
T Consensus       114 ~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         114 FYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             TBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ccHHHHHHHHHHHHhcCCCCeEEE
Confidence            444557799999999999999885

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.17  E-value=8.2e-11  Score=109.35  Aligned_cols=124  Identities=10%  Similarity=0.074  Sum_probs=80.2

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc----CCCceeecc---cCCCCCCCCccceEE
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR----GLFPLYLSL---DHRFPFYDNVFDLVH  331 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR----Gli~~~~~~---~e~LPf~d~sFDlV~  331 (418)
                      +++|  .+|||+|||+|+++.+|++. |-....+++|+++.|++.+.++    +.+..+..+   .+..+.....+|+|+
T Consensus        71 i~pG--~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~  148 (227)
T d1g8aa_          71 IKPG--KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIF  148 (227)
T ss_dssp             CCTT--CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             cCCC--CEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEE
Confidence            5666  49999999999999999986 3221114579999999876553    332223332   234455567899888


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC------chhHHHHHHHHHHHcCcEEEE
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA------NDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~------~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      +.  +.+.   ...+.++.++.|+|||||++++......      .+...++...+. ..||+.+.
T Consensus       149 ~d--~~~~---~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~-~~gf~iie  208 (227)
T d1g8aa_         149 ED--VAQP---TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEYFEVIE  208 (227)
T ss_dssp             EC--CCST---THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTTSEEEE
T ss_pred             EE--cccc---chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHH-HcCCEEEE
Confidence            64  2333   2334899999999999999988754321      122223333333 45898875

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.17  E-value=1.5e-11  Score=112.86  Aligned_cols=97  Identities=21%  Similarity=0.229  Sum_probs=73.3

Q ss_pred             HHHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHc----CCCc--eeecccCCCCCCCCc
Q 037675          256 DVLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAAR----GLFP--LYLSLDHRFPFYDNV  326 (418)
Q Consensus       256 ~lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eR----Gli~--~~~~~~e~LPf~d~s  326 (418)
                      +.+.+++|.  +|||||||+|.+++.|++. +  ..++  ++|.++.+++.|+++    ++..  ..+++....++.+++
T Consensus        69 ~~l~l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~V~--~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~  144 (213)
T d1dl5a1          69 EWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVV--SVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (213)
T ss_dssp             HHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEE--EEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             Hhhhccccc--eEEEecCccchhHHHHHHHhCCCCcEE--EeecchhhHHHhhhhHhhhcccccccccCchHHccccccc
Confidence            445677774  9999999999999999875 3  3343  479999999887664    3322  344666677777889


Q ss_pred             cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      ||.|++..++++..  +       ++.++|||||++++.
T Consensus       145 fD~I~~~~~~~~~p--~-------~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         145 YDVIFVTVGVDEVP--E-------TWFTQLKEGGRVIVP  174 (213)
T ss_dssp             EEEEEECSBBSCCC--H-------HHHHHEEEEEEEEEE
T ss_pred             hhhhhhhccHHHhH--H-------HHHHhcCCCcEEEEE
Confidence            99999999887653  2       567889999999774

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.12  E-value=2.2e-10  Score=104.60  Aligned_cols=118  Identities=18%  Similarity=0.259  Sum_probs=80.7

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHH----HcCCC--ceeecccCCCC--CCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIA----ARGLF--PLYLSLDHRFP--FYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~----eRGli--~~~~~~~e~LP--f~d~sFDlV~s~~~  335 (418)
                      ..|||||||+|.+...|++.  +..++  ++|+++.++..|.    +.++.  .++.++++.+.  +++.++|.|++...
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~i--Gid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP  110 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYI--GIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  110 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEE--EEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceE--EEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence            47999999999999999987  35554  5899998887654    44663  34556777765  78999999997654


Q ss_pred             CcCCCChhH------HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEE
Q 037675          336 LDVGGQPEK------LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKK  389 (418)
Q Consensus       336 L~~~~~~~~------le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~  389 (418)
                      - +|.....      -..+|.++.|+|||||.+++.+   ..++..+.....+...++..
T Consensus       111 d-Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T---D~~~Y~~~~le~~~~~~~~~  166 (204)
T d1yzha1         111 D-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT---DNRGLFEYSLVSFSQYGMKL  166 (204)
T ss_dssp             C-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE---SCHHHHHHHHHHHHHHTCEE
T ss_pred             c-cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE---CCccHHHHHHHHHHHCCccc
Confidence            3 3332210      1378999999999999997743   11222223344555666653

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.1e-11  Score=116.66  Aligned_cols=103  Identities=11%  Similarity=0.192  Sum_probs=76.1

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHc-----------C----CCceeecccCCC
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER-NV-TVITNTLNVDAPYSEFIAAR-----------G----LFPLYLSLDHRF  320 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~-gV-~vv~~alD~s~~~l~~a~eR-----------G----li~~~~~~~e~L  320 (418)
                      +.++++.  +|||+|||+|.++..++.. +. .++  ++|+++.+++.|.+.           |    -+.+..+++..+
T Consensus       147 ~~l~~~~--~vlD~GcG~G~~~~~~a~~~~~~~~~--Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~  222 (328)
T d1nw3a_         147 IKMTDDD--LFVDLGSGVGQVVLQVAAATNCKHHY--GVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE  222 (328)
T ss_dssp             SCCCTTC--EEEEETCTTSHHHHHHHHHCCCSEEE--EEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH
T ss_pred             cCCCCCC--EEEEcCCCCCHHHHHHHHHhCCCeEE--EEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc
Confidence            3466654  8999999999999888765 54 454  589999988766442           2    235667889999


Q ss_pred             CCCCCccc--eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          321 PFYDNVFD--LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       321 Pf~d~sFD--lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      ||.+..||  +|++. .+.++   .++...|.|+.|+|||||.++....+
T Consensus       223 ~~~~~~~~advi~~~-~~~f~---~~~~~~l~e~~r~LKpGg~iv~~~~~  268 (328)
T d1nw3a_         223 EWRERIANTSVIFVN-NFAFG---PEVDHQLKERFANMKEGGRIVSSKPF  268 (328)
T ss_dssp             HHHHHHHHCSEEEEC-CTTTC---HHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             ccccccCcceEEEEc-ceecc---hHHHHHHHHHHHhCCCCcEEEEeccc
Confidence            98888775  55554 44444   35568999999999999999876654

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.1e-10  Score=107.92  Aligned_cols=94  Identities=20%  Similarity=0.221  Sum_probs=70.8

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHc----CC-------CceeecccCCCCCCC
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAAR----GL-------FPLYLSLDHRFPFYD  324 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eR----Gl-------i~~~~~~~e~LPf~d  324 (418)
                      .+++|  .+|||||||+|.+++.|++. +  -.|+  ++|.++++++.|+++    ++       +.+..++....++.+
T Consensus        73 ~l~~g--~~VLdiG~GsGy~ta~la~l~~~~g~V~--~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~  148 (224)
T d1i1na_          73 QLHEG--AKALDVGSGSGILTACFARMVGCTGKVI--GIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEE  148 (224)
T ss_dssp             TSCTT--CEEEEETCTTSHHHHHHHHHHCTTCEEE--EEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGG
T ss_pred             ccCCC--CeEEEecCCCCHHHHHHHHHhCCCceEE--EEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchh
Confidence            35666  48999999999999888875 2  3443  479999999877543    22       234456777777788


Q ss_pred             CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          325 NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       325 ~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      +.||.|++..++++..  +       ++.+.|||||++++-
T Consensus       149 ~~fD~I~~~~~~~~ip--~-------~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         149 APYDAIHVGAAAPVVP--Q-------ALIDQLKPGGRLILP  180 (224)
T ss_dssp             CCEEEEEECSBBSSCC--H-------HHHHTEEEEEEEEEE
T ss_pred             hhhhhhhhhcchhhcC--H-------HHHhhcCCCcEEEEE
Confidence            8999999998887652  2       577899999999774

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.05  E-value=4.2e-10  Score=106.75  Aligned_cols=123  Identities=16%  Similarity=0.185  Sum_probs=85.1

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHc----CCCcee---ecccCCCCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAAR----GLFPLY---LSLDHRFPF  322 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eR----Gli~~~---~~~~e~LPf  322 (418)
                      +|-..+++.+|.  +|||+|||+|.++.+|++. +  -.++  ++|.++.+++.|+++    |+....   +++. ...+
T Consensus        94 ~Ii~~l~i~pG~--~VLDiG~GsG~lt~~lA~~~~~~G~V~--~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~-~~~~  168 (266)
T d1o54a_          94 FIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVF--AYEKREEFAKLAESNLTKWGLIERVTIKVRDI-SEGF  168 (266)
T ss_dssp             HHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEE--EECCCHHHHHHHHHHHHHTTCGGGEEEECCCG-GGCC
T ss_pred             HHHHhhCCCCCC--EEEECCCCCCHHHHHHHHHhCCCcEEE--EEeCCHHHHHHHHHHHHHhccccCcEEEeccc-cccc
Confidence            344456678775  9999999999999999875 2  3443  579999999887653    442222   2332 2246


Q ss_pred             CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          323 YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       323 ~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      ....||.|+.     +..++.   .++.++.|+|||||.+++..+..  ++.. ...+.++..||..++
T Consensus       169 ~~~~~D~V~~-----d~p~p~---~~l~~~~~~LKpGG~lv~~~P~~--~Qv~-~~~~~l~~~gF~~i~  226 (266)
T d1o54a_         169 DEKDVDALFL-----DVPDPW---NYIDKCWEALKGGGRFATVCPTT--NQVQ-ETLKKLQELPFIRIE  226 (266)
T ss_dssp             SCCSEEEEEE-----CCSCGG---GTHHHHHHHEEEEEEEEEEESSH--HHHH-HHHHHHHHSSEEEEE
T ss_pred             cccceeeeEe-----cCCCHH---HHHHHHHhhcCCCCEEEEEeCcc--cHHH-HHHHHHHHCCceeEE
Confidence            6788998874     344444   78999999999999998765532  2322 355566778998765

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5e-10  Score=109.19  Aligned_cols=125  Identities=14%  Similarity=0.124  Sum_probs=79.8

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHc-----------------CCCce
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAAR-----------------GLFPL  312 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eR-----------------Gli~~  312 (418)
                      +|-..+++.+|.  +|||+|||+|.++.+|+.. +  -.+  +++|.++.+++.|+++                 ..+.+
T Consensus        89 ~Il~~l~i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G~V--~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~  164 (324)
T d2b25a1          89 MILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGRV--ISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF  164 (324)
T ss_dssp             HHHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEE--EEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred             HHHHHhCCCCCC--EEEEecccccHHHHHHHHHhCCCcEE--EEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeE
Confidence            444556788885  9999999999999999975 3  234  3479999999887653                 11234


Q ss_pred             eecccCCCC--CCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHH-HcCcEE
Q 037675          313 YLSLDHRFP--FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIE-RFGYKK  389 (418)
Q Consensus       313 ~~~~~e~LP--f~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~-~~Gfk~  389 (418)
                      .+++.....  +++..||.|+. .+-.+|       .++.++.|+|||||.+++-.+.  -++..+.+..+-+ .++|..
T Consensus       165 ~~~di~~~~~~~~~~~fD~V~L-D~p~P~-------~~l~~~~~~LKpGG~lv~~~P~--i~Qv~~~~~~l~~~~~~f~~  234 (324)
T d2b25a1         165 IHKDISGATEDIKSLTFDAVAL-DMLNPH-------VTLPVFYPHLKHGGVCAVYVVN--ITQVIELLDGIRTCELALSC  234 (324)
T ss_dssp             EESCTTCCC-------EEEEEE-CSSSTT-------TTHHHHGGGEEEEEEEEEEESS--HHHHHHHHHHHHHHTCCEEE
T ss_pred             EecchhhcccccCCCCcceEee-cCcCHH-------HHHHHHHHhccCCCEEEEEeCC--HHHHHHHHHHHHHcCCCcee
Confidence            455555443  46788999986 233334       5788999999999998774442  2343333333322 457866


Q ss_pred             EE
Q 037675          390 LK  391 (418)
Q Consensus       390 l~  391 (418)
                      ++
T Consensus       235 i~  236 (324)
T d2b25a1         235 EK  236 (324)
T ss_dssp             EE
T ss_pred             eE
Confidence            53

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.99  E-value=5.2e-10  Score=104.70  Aligned_cols=123  Identities=14%  Similarity=0.119  Sum_probs=85.6

Q ss_pred             CCCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCC
Q 037675          263 GGIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       263 g~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      ...++|||||||+|.++..++++.  +.++  ..|. +..++.+....-+....++... |.|  ..|+++..++||.|.
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~--v~Dl-p~vi~~~~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~  153 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGI--NFDL-PQVIENAPPLSGIEHVGGDMFA-SVP--QGDAMILKAVCHNWS  153 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEE--EEEC-HHHHTTCCCCTTEEEEECCTTT-CCC--CEEEEEEESSGGGSC
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEE--Eecc-hhhhhccCCCCCeEEecCCccc-ccc--cceEEEEehhhhhCC
Confidence            346899999999999999999883  5443  4575 3333322222223444444321 333  359999999999997


Q ss_pred             ChhHHHHHHHHhhccccCCcEEEEEecccCc-------------------------hhHHHHHHHHHHHcCcEEEEE
Q 037675          341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCAN-------------------------DEKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~-------------------------ee~~~~~~~l~~~~Gfk~l~W  392 (418)
                      +.+ -..+|..+.++|+|||.++|.+.....                         +...++|.++++++||+.++.
T Consensus       154 de~-~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v  229 (244)
T d1fp1d2         154 DEK-CIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQV  229 (244)
T ss_dssp             HHH-HHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEE
T ss_pred             HHH-HHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEE
Confidence            644 457999999999999999888753211                         012468999999999999874

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=2.9e-09  Score=101.45  Aligned_cols=137  Identities=14%  Similarity=0.181  Sum_probs=90.4

Q ss_pred             CCcHHHHHHHHccCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHH----cCC--CceeecccCC
Q 037675          248 GKNDFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAA----RGL--FPLYLSLDHR  319 (418)
Q Consensus       248 ~~y~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~e----RGl--i~~~~~~~e~  319 (418)
                      ..++.+++..+........+|||+|||+|..+..++..  +..++  ++|+|+..++.|++    .|+  +.++.++...
T Consensus        92 peTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~--avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~  169 (274)
T d2b3ta1          92 PDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEII--AVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS  169 (274)
T ss_dssp             TTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEE--EECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG
T ss_pred             cchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceee--eccchhHHHhHHHHHHHHhCcccceeeeccccc
Confidence            34555666555533333357999999999999988875  35554  58999988877654    344  2344443322


Q ss_pred             CCCCCCccceEEecCcCcC------------CCC----------hhHHHHHHHHhhccccCCcEEEEEecccCchhHHHH
Q 037675          320 FPFYDNVFDLVHASSGLDV------------GGQ----------PEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSA  377 (418)
Q Consensus       320 LPf~d~sFDlV~s~~~L~~------------~~~----------~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~  377 (418)
                       +++++.||+|+|+==...            +.+          ......++.+..+.|+|||.+++...+.+.    +.
T Consensus       170 -~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~----~~  244 (274)
T d2b3ta1         170 -ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQG----EA  244 (274)
T ss_dssp             -GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCH----HH
T ss_pred             -ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHH----HH
Confidence             456789999999621111            000          023457889999999999999886544332    34


Q ss_pred             HHHHHHHcCcEEEE
Q 037675          378 LTRLIERFGYKKLK  391 (418)
Q Consensus       378 ~~~l~~~~Gfk~l~  391 (418)
                      +..+++..||..++
T Consensus       245 v~~~l~~~gf~~i~  258 (274)
T d2b3ta1         245 VRQAFILAGYHDVE  258 (274)
T ss_dssp             HHHHHHHTTCTTCC
T ss_pred             HHHHHHHCCCCeEE
Confidence            67788899998663

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.92  E-value=1.1e-09  Score=101.60  Aligned_cols=98  Identities=20%  Similarity=0.176  Sum_probs=71.6

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc--CC--CceeecccCCCCCCCCccce
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR--GL--FPLYLSLDHRFPFYDNVFDL  329 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR--Gl--i~~~~~~~e~LPf~d~sFDl  329 (418)
                      +-+.+.+++|.  +|||||||+|.+++.|++..-.|+  ++|.++.+++.|+++  ..  +.+.+++...-....+.||.
T Consensus        62 ml~~L~l~~g~--~VLdIG~GsGy~ta~La~l~~~V~--aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~  137 (224)
T d1vbfa_          62 MLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVDKVV--SVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR  137 (224)
T ss_dssp             HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEE--EEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred             HHHHhhhcccc--eEEEecCCCCHHHHHHHHHhcccc--cccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHH
Confidence            34456777775  999999999999999999876664  479999999888764  22  23445544333234677999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEE
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWL  364 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii  364 (418)
                      |++..++.+..  +       ++.+.|||||++++
T Consensus       138 Iiv~~a~~~ip--~-------~l~~qLk~GGrLV~  163 (224)
T d1vbfa_         138 VVVWATAPTLL--C-------KPYEQLKEGGIMIL  163 (224)
T ss_dssp             EEESSBBSSCC--H-------HHHHTEEEEEEEEE
T ss_pred             HHhhcchhhhh--H-------HHHHhcCCCCEEEE
Confidence            99998887653  2       45578999999976

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=4e-09  Score=105.62  Aligned_cols=104  Identities=12%  Similarity=0.020  Sum_probs=69.9

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcC-----------CC--ce---eecccCC
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAER-NV-TVITNTLNVDAPYSEFIAARG-----------LF--PL---YLSLDHR  319 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRG-----------li--~~---~~~~~e~  319 (418)
                      +.+++|.  ++||+|||+|.++..++.. ++ .++  ++|+++.|++.|+++.           ..  ..   ..++...
T Consensus       212 l~Lkpgd--~fLDLGCG~G~~vl~aA~~~g~~~v~--GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~  287 (406)
T d1u2za_         212 CQLKKGD--TFMDLGSGVGNCVVQAALECGCALSF--GCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVD  287 (406)
T ss_dssp             TTCCTTC--EEEEESCTTSHHHHHHHHHHCCSEEE--EEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTT
T ss_pred             hCCCCCC--EEEeCCCCCcHHHHHHHHHcCCCeEE--EEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhh
Confidence            3566664  8999999999999999876 65 554  5899999998876541           10  11   1122222


Q ss_pred             CCCCC---CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675          320 FPFYD---NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC  369 (418)
Q Consensus       320 LPf~d---~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~  369 (418)
                      .++.+   ..+|+|++.. +.+.   .++..+|.|+.|+|||||.++..+.+.
T Consensus       288 ~~~~d~~~~~adVV~inn-~~f~---~~l~~~L~ei~r~LKPGGrIVs~~~~~  336 (406)
T d1u2za_         288 NNRVAELIPQCDVILVNN-FLFD---EDLNKKVEKILQTAKVGCKIISLKSLR  336 (406)
T ss_dssp             CHHHHHHGGGCSEEEECC-TTCC---HHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             ccccccccccceEEEEec-ccCc---hHHHHHHHHHHHhcCCCcEEEEecccC
Confidence            22222   2356777654 3333   456799999999999999998876543

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.78  E-value=8e-09  Score=96.40  Aligned_cols=122  Identities=15%  Similarity=0.157  Sum_probs=85.8

Q ss_pred             CCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCC
Q 037675          264 GIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQ  341 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~  341 (418)
                      ..++|||||||+|.++..++++  +..++  ..|. +..++.+....-+.++.++... |.+  .+|+++..++||.|.+
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~--v~Dl-p~vi~~~~~~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~d  153 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCI--VFDR-PQVVENLSGSNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTD  153 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEE--EEEC-HHHHTTCCCBTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCH
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEE--EecC-HHHHHhCcccCceEEEecCccc-CCC--CCcEEEEEeecccCCh
Confidence            3568999999999999999988  35543  3575 3344433333334555555433 322  5799999999999976


Q ss_pred             hhHHHHHHHHhhccccCC---cEEEEEecccCc------------------------hhHHHHHHHHHHHcCcEEEEE
Q 037675          342 PEKLEFLMFDFDRILRAG---GLFWLDNFYCAN------------------------DEKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       342 ~~~le~~L~Ei~RVLRPG---G~~ii~~~~~~~------------------------ee~~~~~~~l~~~~Gfk~l~W  392 (418)
                      .+ -..+|..+.+.|+||   |.++|.+.....                        +...++|.++++++||+.++.
T Consensus       154 ~~-~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i  230 (244)
T d1fp2a2         154 KD-CLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKI  230 (244)
T ss_dssp             HH-HHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEE
T ss_pred             HH-HHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEE
Confidence            54 457999999999999   777776642211                        112468999999999998873

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.72  E-value=4.4e-09  Score=97.81  Aligned_cols=121  Identities=13%  Similarity=0.125  Sum_probs=83.1

Q ss_pred             CCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcCCCceeeccc-CCCCCCCCccceEEecCcCcCCC
Q 037675          264 GIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARGLFPLYLSLD-HRFPFYDNVFDLVHASSGLDVGG  340 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~-e~LPf~d~sFDlV~s~~~L~~~~  340 (418)
                      ..++|||||||+|.++..++++  +..++  ..|..+ .++.+.+...+....++. +.+|  .  .|.++..+++|.|.
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~--v~Dlp~-vi~~~~~~~r~~~~~~d~~~~~P--~--ad~~~l~~vlh~~~  153 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGI--NFDLPH-VIEDAPSYPGVEHVGGDMFVSIP--K--ADAVFMKWICHDWS  153 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEE--EEECTT-TTTTCCCCTTEEEEECCTTTCCC--C--CSCEECSSSSTTSC
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEE--EcccHH-hhhhcccCCceEEecccccccCC--C--cceEEEEEEeecCC
Confidence            3679999999999999999987  45554  346532 233222222223333443 3333  3  47778889999997


Q ss_pred             ChhHHHHHHHHhhccccCCcEEEEEecccCc--------------------------hhHHHHHHHHHHHcCcEEEEE
Q 037675          341 QPEKLEFLMFDFDRILRAGGLFWLDNFYCAN--------------------------DEKKSALTRLIERFGYKKLKW  392 (418)
Q Consensus       341 ~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~--------------------------ee~~~~~~~l~~~~Gfk~l~W  392 (418)
                      +. ....+|+++.+.|+|||.++|.+.....                          +...++|.++++++||+.++.
T Consensus       154 d~-~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv  230 (243)
T d1kyza2         154 DE-HCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKV  230 (243)
T ss_dssp             HH-HHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEE
T ss_pred             HH-HHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEE
Confidence            64 4568999999999999999887652110                          112367999999999998864

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.63  E-value=2.5e-08  Score=91.93  Aligned_cols=94  Identities=16%  Similarity=0.180  Sum_probs=68.0

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc----Cc----EEEEeccCCCHHhHHHHHHc---------C--CCceeecccCC
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER----NV----TVITNTLNVDAPYSEFIAAR---------G--LFPLYLSLDHR  319 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~----gV----~vv~~alD~s~~~l~~a~eR---------G--li~~~~~~~e~  319 (418)
                      .+++|  .+|||||||+|.+++.|++.    |+    .|+  ++|.++.+++.++++         +  -+.+..++...
T Consensus        77 ~l~~g--~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~--~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~  152 (223)
T d1r18a_          77 HLKPG--ARILDVGSGSGYLTACFYRYIKAKGVDADTRIV--GIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK  152 (223)
T ss_dssp             TCCTT--CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEE--EEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG
T ss_pred             ccCCC--CeEEEecCCCCHHHHHHHHHhhhccCCcccEEE--EEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccc
Confidence            45666  49999999999999888764    32    453  479999988877553         1  12445566665


Q ss_pred             CCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          320 FPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       320 LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      ...+.+.||.|++..++....  +       .+.+.|||||++++-
T Consensus       153 ~~~~~~~fD~Iiv~~a~~~~p--~-------~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         153 GYPPNAPYNAIHVGAAAPDTP--T-------ELINQLASGGRLIVP  189 (223)
T ss_dssp             CCGGGCSEEEEEECSCBSSCC--H-------HHHHTEEEEEEEEEE
T ss_pred             ccccccceeeEEEEeechhch--H-------HHHHhcCCCcEEEEE
Confidence            555678899999998887543  2       456799999999763

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.58  E-value=2.2e-07  Score=87.24  Aligned_cols=118  Identities=17%  Similarity=0.252  Sum_probs=82.2

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcC-cEEEEeccCCCHHhHHHHHH----cCC---CceeecccCCCCCCCCccceEE
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERN-VTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHRFPFYDNVFDLVH  331 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~g-V~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~LPf~d~sFDlV~  331 (418)
                      +++|  .+|||+|||+|.++..+++++ ..++  ++|+++..++.+++    .|+   +.++.+++..++ ..+.||.|+
T Consensus       105 ~~~g--~~VlD~~aG~G~~~l~~a~~~~~~V~--avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii  179 (260)
T d2frna1         105 AKPD--ELVVDMFAGIGHLSLPIAVYGKAKVI--AIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRIL  179 (260)
T ss_dssp             CCTT--CEEEETTCTTTTTHHHHHHHTCCEEE--EECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEE
T ss_pred             cCCc--cEEEECcceEcHHHHHHHHhCCcEEE--EecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEE
Confidence            4566  489999999999999999886 4553  58999988876544    454   345567777765 357899998


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC---chhHHHHHHHHHHHcCcEE
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA---NDEKKSALTRLIERFGYKK  389 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~---~ee~~~~~~~l~~~~Gfk~  389 (418)
                      +..--    ..   ..++.+..++|||||++.+.++...   .++..+.+..+....||+.
T Consensus       180 ~~~p~----~~---~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v  233 (260)
T d2frna1         180 MGYVV----RT---HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV  233 (260)
T ss_dssp             ECCCS----SG---GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred             ECCCC----ch---HHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCce
Confidence            74211    11   2577788999999998866554222   1223355777888889865

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.58  E-value=1.5e-07  Score=84.38  Aligned_cols=98  Identities=16%  Similarity=0.172  Sum_probs=67.7

Q ss_pred             CeEEEECCccCh----HHHHHhhc------CcEEEEeccCCCHHhHHHHHHc--------CCCce---------------
Q 037675          266 RIGFDIGGGSGT----FAARMAER------NVTVITNTLNVDAPYSEFIAAR--------GLFPL---------------  312 (418)
Q Consensus       266 r~VLDvGCGtG~----faa~La~~------gV~vv~~alD~s~~~l~~a~eR--------Gli~~---------------  312 (418)
                      -+|+++|||+|.    +|..|.+.      .+.+  .+.|+++..++.|++.        ++.+.               
T Consensus        26 lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I--~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          26 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKV--FASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEE--EEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             eEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEE--EeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            489999999996    55555543      2344  4689999999887641        11000               


Q ss_pred             --------------e-ecccCCCCCCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          313 --------------Y-LSLDHRFPFYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       313 --------------~-~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                                    . +......+.+.+.||+|+|.++|+...+ ...+.++..+.+.|+|||++++..
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~-~~~~~vl~~l~~~L~pGG~L~lG~  171 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDK-TTQEDILRRFVPLLKPDGLLFAGH  171 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCH-HHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCH-HHHHHHHHHHHHHhCCCcEEEEec
Confidence                          0 0011122334678999999999998764 445789999999999999998764

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.56  E-value=6.4e-08  Score=88.77  Aligned_cols=99  Identities=21%  Similarity=0.229  Sum_probs=70.0

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHH----cCCCc--eeecccCCCCCCCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAA----RGLFP--LYLSLDHRFPFYDN  325 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~e----RGli~--~~~~~~e~LPf~d~  325 (418)
                      .+-+.+.+.+|.  +|||||||+|..++.|++. |-.++  ++|.++.+++.+++    .|+..  +..++...-....+
T Consensus        69 ~ml~~L~l~~g~--~VLeIGsGsGY~taila~l~g~~V~--~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~  144 (215)
T d1jg1a_          69 IMLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDVY--TIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA  144 (215)
T ss_dssp             HHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEE--EEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHhhccCccc--eEEEecCCCChhHHHHHHhhCceeE--EEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccC
Confidence            344556788775  8999999999999999876 53332  36888888877655    35433  34455544444578


Q ss_pred             ccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEE
Q 037675          326 VFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWL  364 (418)
Q Consensus       326 sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii  364 (418)
                      .||.|++..++....  .       .+..-|||||++++
T Consensus       145 pfD~Iiv~~a~~~ip--~-------~l~~qL~~gGrLv~  174 (215)
T d1jg1a_         145 PYDVIIVTAGAPKIP--E-------PLIEQLKIGGKLII  174 (215)
T ss_dssp             CEEEEEECSBBSSCC--H-------HHHHTEEEEEEEEE
T ss_pred             cceeEEeecccccCC--H-------HHHHhcCCCCEEEE
Confidence            899999998887553  2       23456999999866

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.51  E-value=1.2e-07  Score=91.52  Aligned_cols=122  Identities=15%  Similarity=0.101  Sum_probs=78.8

Q ss_pred             CCCCCCeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHH----cCCC---ceeeccc----CCCCCCCCccc
Q 037675          261 GSGGIRIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAA----RGLF---PLYLSLD----HRFPFYDNVFD  328 (418)
Q Consensus       261 ~~g~~r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~e----RGli---~~~~~~~----e~LPf~d~sFD  328 (418)
                      ++|  .+|||+|||+|+++..++..|. .|+  ++|.++.+++.+++    .|+.   .+..+++    ..++...+.||
T Consensus       144 ~~g--~~VLDl~~g~G~~si~~a~~ga~~V~--~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD  219 (324)
T d2as0a2         144 QPG--DRVLDVFTYTGGFAIHAAIAGADEVI--GIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFD  219 (324)
T ss_dssp             CTT--CEEEETTCTTTHHHHHHHHTTCSEEE--EEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCC--CeeecccCcccchhhhhhhcCCcEEE--eecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCC
Confidence            445  4899999999999999998875 443  58999998887654    4552   2333433    23455678999


Q ss_pred             eEEecC-cCcCCC-C----hhHHHHHHHHhhccccCCcEEEEEecccC--chhHHHHHHHHHHHcC
Q 037675          329 LVHASS-GLDVGG-Q----PEKLEFLMFDFDRILRAGGLFWLDNFYCA--NDEKKSALTRLIERFG  386 (418)
Q Consensus       329 lV~s~~-~L~~~~-~----~~~le~~L~Ei~RVLRPGG~~ii~~~~~~--~ee~~~~~~~l~~~~G  386 (418)
                      +|++.- ++.... .    ..+...++....++|||||++++......  .++..+.+.+.....|
T Consensus       220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~g  285 (324)
T d2as0a2         220 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAG  285 (324)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             chhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcC
Confidence            999842 121110 0    11234678888999999999987654222  2344444455555554

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.49  E-value=1.2e-07  Score=91.54  Aligned_cols=120  Identities=15%  Similarity=0.115  Sum_probs=79.3

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCCc--eeeccc----CCCCCCCCccceEEecC-
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLFP--LYLSLD----HRFPFYDNVFDLVHASS-  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli~--~~~~~~----e~LPf~d~sFDlV~s~~-  334 (418)
                      ++|||++||+|+++.+++..+-.|+  ++|.++.+++.+++    .|+-.  ++.+++    +.++...++||+|++.- 
T Consensus       147 ~rVLDl~~gtG~~s~~~a~g~~~V~--~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP  224 (318)
T d1wxxa2         147 ERALDVFSYAGGFALHLALGFREVV--AVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP  224 (318)
T ss_dssp             EEEEEETCTTTHHHHHHHHHEEEEE--EEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CeeeccCCCCcHHHHHHHhcCCcEE--eecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence            4899999999999999886555543  58999999987654    46532  233332    33455678999999852 


Q ss_pred             cCcCCC-----ChhHHHHHHHHhhccccCCcEEEEEeccc--CchhHHHHHHHHHHHcCc
Q 037675          335 GLDVGG-----QPEKLEFLMFDFDRILRAGGLFWLDNFYC--ANDEKKSALTRLIERFGY  387 (418)
Q Consensus       335 ~L~~~~-----~~~~le~~L~Ei~RVLRPGG~~ii~~~~~--~~ee~~~~~~~l~~~~Gf  387 (418)
                      ++..-.     .......++....++|||||.+++.....  ..++..+.+.+.+...|-
T Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~  284 (318)
T d1wxxa2         225 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHR  284 (318)
T ss_dssp             CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCC
Confidence            222111     11233467889999999999987765422  234455556666667664

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.37  E-value=1.6e-07  Score=80.90  Aligned_cols=97  Identities=15%  Similarity=0.117  Sum_probs=65.5

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCC---ceeecccCC-CCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLF---PLYLSLDHR-FPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli---~~~~~~~e~-LPf~d~sFDlV~s~~~L~  337 (418)
                      .+|||+|||+|.++...+.+|..-+ ..+|.++.+++.+++.    ++.   .++.+++.. ++...+.||+|++.-=  
T Consensus        16 ~~vlDl~~GtG~~~iea~~rga~~v-~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP--   92 (152)
T d2esra1          16 GRVLDLFAGSGGLAIEAVSRGMSAA-VLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP--   92 (152)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCCEE-EEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS--
T ss_pred             CeEEEcCCccCHHHHHHHHhCccee-eeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh--
Confidence            4899999999999998888986432 3579998888765542    432   234444433 4566889999997421  


Q ss_pred             CCCChhHHHHHHHHh--hccccCCcEEEEEec
Q 037675          338 VGGQPEKLEFLMFDF--DRILRAGGLFWLDNF  367 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei--~RVLRPGG~~ii~~~  367 (418)
                       + .....+..+..+  .++|+|||.+++.+.
T Consensus        93 -y-~~~~~~~~l~~i~~~~~L~~~g~iiiE~~  122 (152)
T d2esra1          93 -Y-AKETIVATIEALAAKNLLSEQVMVVCETD  122 (152)
T ss_dssp             -S-HHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             -h-ccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence             1 112334555544  478999999988754

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.36  E-value=4.2e-07  Score=82.82  Aligned_cols=111  Identities=20%  Similarity=0.325  Sum_probs=74.3

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC---CceeecccCC-CC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDHR-FP  321 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e~-LP  321 (418)
                      ++..++....  .++|||+|||+|..+..|++.   +..++  ++|.++.+.+.|++    .|+   +.++.+++.. +|
T Consensus        47 lL~~lv~~~k--pk~ILEiGt~~G~Sti~la~al~~~g~v~--sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~  122 (214)
T d2cl5a1          47 IMDAVIREYS--PSLVLELGAYCGYSAVRMARLLQPGARLL--TMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIP  122 (214)
T ss_dssp             HHHHHHHHHC--CSEEEEECCTTSHHHHHHHTTCCTTCEEE--EEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG
T ss_pred             HHHHHHHhhC--CCEEEEEccCchhHHHHHHHhCCCccEEE--EEeccHHHHHHHHHHHHHcCCCccceeeecccccccc
Confidence            4555544332  359999999999999999864   45554  47888888876643    465   3455554322 22


Q ss_pred             -----CCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc
Q 037675          322 -----FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN  371 (418)
Q Consensus       322 -----f~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~  371 (418)
                           +..+.||+|+..+    +++.......+.+..|.|||||++++++..+.+
T Consensus       123 ~l~~~~~~~~~D~ifiD~----~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g  173 (214)
T d2cl5a1         123 QLKKKYDVDTLDMVFLDH----WKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG  173 (214)
T ss_dssp             GHHHHSCCCCEEEEEECS----CGGGHHHHHHHHHHTTCEEEEEEEEESCCCCCC
T ss_pred             chhhcccccccceeeecc----cccccccHHHHHHHhCccCCCcEEEEeCcCCCC
Confidence                 4567899999753    322222224577889999999999888876654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.33  E-value=3.8e-07  Score=82.06  Aligned_cols=119  Identities=14%  Similarity=0.155  Sum_probs=80.8

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHcC-----CCceeecccCCC-----CCCCCc
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAARG-----LFPLYLSLDHRF-----PFYDNV  326 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eRG-----li~~~~~~~e~L-----Pf~d~s  326 (418)
                      ...+|  .++||++||+|+.+..++++  +..+  +++|.++.|++.+.++-     -+.++++....+     .+..++
T Consensus        20 ~~~~~--~~~lD~t~G~Gghs~~il~~~~~~~v--i~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~   95 (192)
T d1m6ya2          20 KPEDE--KIILDCTVGEGGHSRAILEHCPGCRI--IGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEK   95 (192)
T ss_dssp             CCCTT--CEEEETTCTTSHHHHHHHHHCTTCEE--EEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSC
T ss_pred             CCCCC--CEEEEecCCCcHHHHHHHhcCCCCeE--EEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCC
Confidence            34444  48999999999999999886  4555  46899999999998752     123444544433     344688


Q ss_pred             cceEEecCcCcCC------CChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHH
Q 037675          327 FDLVHASSGLDVG------GQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIER  384 (418)
Q Consensus       327 FDlV~s~~~L~~~------~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~  384 (418)
                      ||.|.....+...      .....++..|.++.++|+|||.+++..+...++   .....+++.
T Consensus        96 vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Ed---r~vk~~f~~  156 (192)
T d1m6ya2          96 VDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLED---RIVKETFRN  156 (192)
T ss_dssp             EEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHH---HHHHHHHHH
T ss_pred             cceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHH---HHHHHHHhh
Confidence            9999876433211      123456688999999999999998876654322   234445554

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.15  E-value=3.1e-06  Score=74.13  Aligned_cols=101  Identities=15%  Similarity=0.129  Sum_probs=64.7

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCCc-eeeccc----CCCCCCCCccceE
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLFP-LYLSLD----HRFPFYDNVFDLV  330 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli~-~~~~~~----e~LPf~d~sFDlV  330 (418)
                      +..|  .+|||+|||+|.++...+++|..++  ++|.++.+++.+++    .|+-. +....+    .........||+|
T Consensus        39 ~~~g--~~vLDl~~G~G~~~i~a~~~ga~vv--~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~I  114 (171)
T d1ws6a1          39 YPRR--GRFLDPFAGSGAVGLEAASEGWEAV--LVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVA  114 (171)
T ss_dssp             CTTC--CEEEEETCSSCHHHHHHHHTTCEEE--EECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred             ccCC--CeEEEeccccchhhhhhhhccchhh--hcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCcccee
Confidence            4455  3899999999999999999998775  48999998876644    35522 222222    1223456789999


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ++.==+.. .....+..++.  ...|+|||++++.+.
T Consensus       115 f~DPPY~~-~~~~~l~~l~~--~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         115 FMAPPYAM-DLAALFGELLA--SGLVEAGGLYVLQHP  148 (171)
T ss_dssp             EECCCTTS-CTTHHHHHHHH--HTCEEEEEEEEEEEE
T ss_pred             EEcccccc-CHHHHHHHHHH--cCCcCCCeEEEEEec
Confidence            98521111 11122222222  368999999988764

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.14  E-value=2.4e-06  Score=82.23  Aligned_cols=128  Identities=12%  Similarity=0.054  Sum_probs=79.1

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCC----ceeeccc----CCCCCCCCcc
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLF----PLYLSLD----HRFPFYDNVF  327 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli----~~~~~~~----e~LPf~d~sF  327 (418)
                      +.+|  ++|||+.||+|+|+.+++..|..-| +++|.++..++.+++    .|+-    .++.+++    ..+.-..+.|
T Consensus       142 ~~~g--~~VLdlf~~~G~~sl~aa~~ga~~V-~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~f  218 (317)
T d2b78a2         142 SAAG--KTVLNLFSYTAAFSVAAAMGGAMAT-TSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTY  218 (317)
T ss_dssp             TTBT--CEEEEETCTTTHHHHHHHHTTBSEE-EEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred             hhCC--CceeecCCCCcHHHHHHHhCCCceE-EEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCC
Confidence            4555  4899999999999999888775322 347888877766544    4541    2333433    2222345789


Q ss_pred             ceEEec-CcCc-----CCCChhHHHHHHHHhhccccCCcEEEEEeccc--CchhHHHHHHHHHHHcCcEEE
Q 037675          328 DLVHAS-SGLD-----VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC--ANDEKKSALTRLIERFGYKKL  390 (418)
Q Consensus       328 DlV~s~-~~L~-----~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~--~~ee~~~~~~~l~~~~Gfk~l  390 (418)
                      |+|++. =.+.     .+.-..+...++....++|+|||+++++.-..  ..++..+.+...+...+.+.+
T Consensus       219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~  289 (317)
T d2b78a2         219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYL  289 (317)
T ss_dssp             EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEE
T ss_pred             CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEE
Confidence            999984 1111     11112345578888999999999998865422  223444445555556566544

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.13  E-value=1.2e-05  Score=71.99  Aligned_cols=115  Identities=13%  Similarity=0.234  Sum_probs=71.0

Q ss_pred             CeEEEECCccChHHHHHhhcCc-EEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccceEEecCcCcCC
Q 037675          266 RIGFDIGGGSGTFAARMAERNV-TVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV-~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      .+|||+|||+|.++..++.+|. .++  ++|+++.+++.+++.    +. ..++.++...+   ++.||+|+++-=+...
T Consensus        48 ~~vLDlg~GtG~l~i~a~~~g~~~v~--~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~~~~  122 (201)
T d1wy7a1          48 KVVADLGAGTGVLSYGALLLGAKEVI--CVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPFGSQ  122 (201)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCSEEE--EEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCCSSS
T ss_pred             CEEEECcCcchHHHHHHHHcCCCEEE--EEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCccccc
Confidence            4899999999999998888874 443  589999999888764    22 12233444443   5679999997433322


Q ss_pred             CChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          340 GQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       340 ~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      ....+.. +   +.+.+.+++.++..+.  ..++....+..+....||....
T Consensus       123 ~~~~d~~-~---l~~~~~~~~~v~~ih~--~~~~~~~~i~~~~~~~g~~i~~  168 (201)
T d1wy7a1         123 RKHADRP-F---LLKAFEISDVVYSIHL--AKPEVRRFIEKFSWEHGFVVTH  168 (201)
T ss_dssp             STTTTHH-H---HHHHHHHCSEEEEEEE--CCHHHHHHHHHHHHHTTEEEEE
T ss_pred             cccccHH-H---HHHHHhhcccchhccc--chHHHHHHHHHHHhhcCceEEE
Confidence            2222222 1   2234455665544332  2234445567778888886544

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.12  E-value=1.8e-06  Score=77.94  Aligned_cols=64  Identities=14%  Similarity=0.131  Sum_probs=49.8

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC-CceeecccCCCCCCCCccceEEec
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL-FPLYLSLDHRFPFYDNVFDLVHAS  333 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl-i~~~~~~~e~LPf~d~sFDlV~s~  333 (418)
                      ++|||+|||+|.++..++.+|..-| +++|+++.+++.|++.-- +.+..++..++   ++.||+|+++
T Consensus        50 k~VLDlGcGtG~l~i~a~~~ga~~V-~~vDid~~a~~~ar~N~~~~~~~~~D~~~l---~~~fD~Vi~N  114 (197)
T d1ne2a_          50 RSVIDAGTGNGILACGSYLLGAESV-TAFDIDPDAIETAKRNCGGVNFMVADVSEI---SGKYDTWIMN  114 (197)
T ss_dssp             SEEEEETCTTCHHHHHHHHTTBSEE-EEEESCHHHHHHHHHHCTTSEEEECCGGGC---CCCEEEEEEC
T ss_pred             CEEEEeCCCCcHHHHHHHHcCCCcc-cccccCHHHHHHHHHccccccEEEEehhhc---CCcceEEEeC
Confidence            5899999999999988888875432 358999999998887532 35566666665   4789999996

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=1.3e-05  Score=70.96  Aligned_cols=148  Identities=19%  Similarity=0.263  Sum_probs=86.6

Q ss_pred             HHHHHcc-CCCCCCeEEEECCccChHHHHHhhc-C--cEEEEeccCCCHHhHHHHHHcCCCceeecccCCC--------C
Q 037675          254 IDDVLAL-GSGGIRIGFDIGGGSGTFAARMAER-N--VTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF--------P  321 (418)
Q Consensus       254 I~~lL~l-~~g~~r~VLDvGCGtG~faa~La~~-g--V~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L--------P  321 (418)
                      |++-..+ +++  .+|||+||+.|+|..++.++ +  -.++  ++|..+ +.   .-.|. ..+.++....        -
T Consensus        13 I~~k~~l~k~~--~~vlDLg~aPGgw~q~~~~~~~~~~~v~--~vDl~~-~~---~i~~~-~~~~~d~~~~~~~~~~~~~   83 (180)
T d1ej0a_          13 IQQSDKLFKPG--MTVVDLGAAPGGWSQYVVTQIGGKGRII--ACDLLP-MD---PIVGV-DFLQGDFRDELVMKALLER   83 (180)
T ss_dssp             HHHHHCCCCTT--CEEEEESCTTCHHHHHHHHHHCTTCEEE--EEESSC-CC---CCTTE-EEEESCTTSHHHHHHHHHH
T ss_pred             HHHHhCccCCC--CeEEEEeccCCcceEEEEeeccccceEE--Eeeccc-cc---ccCCc-eEeecccccchhhhhhhhh
Confidence            4443343 444  58999999999999998875 2  3333  344422 00   00111 1222222110        1


Q ss_pred             CCCCccceEEecCcCcCCCChh--------HHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEE
Q 037675          322 FYDNVFDLVHASSGLDVGGQPE--------KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       322 f~d~sFDlV~s~~~L~~~~~~~--------~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      +....||+|.|..+........        -....+.=..++|||||.|++-.|..  ++..+ +...++.. |+.++..
T Consensus        84 ~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g--~~~~~-l~~~l~~~-F~~V~~~  159 (180)
T d1ej0a_          84 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG--EGFDE-YLREIRSL-FTKVKVR  159 (180)
T ss_dssp             HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS--TTHHH-HHHHHHHH-EEEEEEE
T ss_pred             ccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC--ccHHH-HHHHHHhh-cCEEEEE
Confidence            2356799999987766544332        12234445678999999998876643  33333 44444443 8888755


Q ss_pred             EcccCCCCccceEEEEEEEcC
Q 037675          394 VGEKGETGKSEVYLSAVLQKP  414 (418)
Q Consensus       394 ~~~k~d~~~~e~~l~Ai~qKP  414 (418)
                      ...-..+...|.|+.+.-.||
T Consensus       160 KP~aSR~~SsE~Ylv~~g~Kp  180 (180)
T d1ej0a_         160 KPDSSRARSREVYIVATGRKP  180 (180)
T ss_dssp             CCTTSCTTCCEEEEEEEEECC
T ss_pred             CCCCcccCCceEEEEEecCCC
Confidence            433333456799999999998

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3e-05  Score=71.79  Aligned_cols=139  Identities=12%  Similarity=0.115  Sum_probs=85.3

Q ss_pred             cHHHHHHHHcc---CCCCCCeEEEECCccChHHHHHhhc--CcEEEEeccCCCHHhHHHHHHc----CCC---ceeecc-
Q 037675          250 NDFLIDDVLAL---GSGGIRIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAPYSEFIAAR----GLF---PLYLSL-  316 (418)
Q Consensus       250 y~~~I~~lL~l---~~g~~r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~~l~~a~eR----Gli---~~~~~~-  316 (418)
                      |...|.+++..   ......+|||+|||+|..+..|+.+  +..++  ++|+++..++.|++.    ++.   .+.+.. 
T Consensus        44 ~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~--~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~  121 (250)
T d2h00a1          44 YIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFL--ATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQ  121 (250)
T ss_dssp             HHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEE--EEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             HHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCcccc--ceecCHHHHHHHHHHHHHhCCCcceeeeeecc
Confidence            56677776642   1233458999999999999998876  55654  589999999877653    432   223321 


Q ss_pred             cCCC-----CCCCCccceEEecCcCcCCC--------------C------------------hhHHHHHHHHhhccccCC
Q 037675          317 DHRF-----PFYDNVFDLVHASSGLDVGG--------------Q------------------PEKLEFLMFDFDRILRAG  359 (418)
Q Consensus       317 ~e~L-----Pf~d~sFDlV~s~~~L~~~~--------------~------------------~~~le~~L~Ei~RVLRPG  359 (418)
                      ...+     ...++.||+|+|+==++...              .                  ..-.+.++.|..+.++..
T Consensus       122 ~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~  201 (250)
T d2h00a1         122 KTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRL  201 (250)
T ss_dssp             TCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGB
T ss_pred             HHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcC
Confidence            1111     23467899999973222100              0                  012456677888889999


Q ss_pred             cEEEEEecccCchhHHHHHHHHHHHcCcEEEEEE
Q 037675          360 GLFWLDNFYCANDEKKSALTRLIERFGYKKLKWV  393 (418)
Q Consensus       360 G~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~  393 (418)
                      |++...-.  ..+.. +.+..++++.|++.+++.
T Consensus       202 g~~t~~ig--~~~~l-~~i~~~L~~~g~~~i~~i  232 (250)
T d2h00a1         202 RWYSCMLG--KKCSL-APLKEELRIQGVPKVTYT  232 (250)
T ss_dssp             SCEEEEES--STTSH-HHHHHHHHHTTCSEEEEE
T ss_pred             cEEEEEec--chhhH-HHHHHHHHHcCCCeEEEE
Confidence            97632211  11222 336777899999887654

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.04  E-value=2.9e-06  Score=80.10  Aligned_cols=134  Identities=19%  Similarity=0.220  Sum_probs=80.7

Q ss_pred             CCcHHHHHHHHcc-CCCCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHH----cCCC---ceeec-cc
Q 037675          248 GKNDFLIDDVLAL-GSGGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAA----RGLF---PLYLS-LD  317 (418)
Q Consensus       248 ~~y~~~I~~lL~l-~~g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~e----RGli---~~~~~-~~  317 (418)
                      ..++.+++.++.. ......+|+|+|||+|..+..+++. +..++  ++|+++..++.|++    .|+.   .+..+ +.
T Consensus        93 peTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~--a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~  170 (271)
T d1nv8a_          93 PETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVF--ATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL  170 (271)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEE--EEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT
T ss_pred             hhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceee--echhhhhHHHHHHHHHHHcCCCceeEEeecccc
Confidence            4455666555442 2223458999999999988888765 45553  57999988877655    3442   22333 44


Q ss_pred             CCCCCCCCccceEEec--Cc-----CcC---C-------CChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHH
Q 037675          318 HRFPFYDNVFDLVHAS--SG-----LDV---G-------GQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTR  380 (418)
Q Consensus       318 e~LPf~d~sFDlV~s~--~~-----L~~---~-------~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~  380 (418)
                      +.++...+.||+|+|+  ++     +..   +       ...++++.+-.=+.+.|+|||++++...+.+.+.    +..
T Consensus       171 ~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~----v~~  246 (271)
T d1nv8a_         171 EPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEE----LKK  246 (271)
T ss_dssp             GGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHH----HTT
T ss_pred             cccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHH----HHH
Confidence            4444445789999997  11     110   1       1122333333335688999999988765544333    455


Q ss_pred             HHHHcCc
Q 037675          381 LIERFGY  387 (418)
Q Consensus       381 l~~~~Gf  387 (418)
                      +++..||
T Consensus       247 l~~~~g~  253 (271)
T d1nv8a_         247 IVSDTVF  253 (271)
T ss_dssp             TSTTCEE
T ss_pred             HHHhCCE
Confidence            5666555

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.97  E-value=1.3e-05  Score=77.06  Aligned_cols=125  Identities=13%  Similarity=0.041  Sum_probs=79.1

Q ss_pred             cCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCC----ceeecccC----CCCCCCCcc
Q 037675          260 LGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLF----PLYLSLDH----RFPFYDNVF  327 (418)
Q Consensus       260 l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli----~~~~~~~e----~LPf~d~sF  327 (418)
                      ...+  .+|||+.||+|.|+.+++..|..|+  ++|.|+..++.|++    .|+.    .++.+++.    ++....+.|
T Consensus       130 ~~~~--~rVLdlf~~tG~~sl~aa~~GA~V~--~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~f  205 (309)
T d2igta1         130 ADRP--LKVLNLFGYTGVASLVAAAAGAEVT--HVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTY  205 (309)
T ss_dssp             SSSC--CEEEEETCTTCHHHHHHHHTTCEEE--EECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred             ccCC--CeEEEecCCCcHHHHHHHhCCCeEE--EEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCC
Confidence            4444  5999999999999999999987754  58999999987765    3542    23334332    222345789


Q ss_pred             ceEEec---CcCc----CCCChhHHHHHHHHhhccccCCcEEEEEecccC---chhHHHHHHHHHHHcCcE
Q 037675          328 DLVHAS---SGLD----VGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA---NDEKKSALTRLIERFGYK  388 (418)
Q Consensus       328 DlV~s~---~~L~----~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~---~ee~~~~~~~l~~~~Gfk  388 (418)
                      |+|++.   ..-.    .+.-...+..++..+.++|+|||.+++....+.   .....+.+...+...|-+
T Consensus       206 D~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~  276 (309)
T d2igta1         206 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGV  276 (309)
T ss_dssp             SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSE
T ss_pred             CEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCc
Confidence            999984   1111    121123344566678889999997766554332   233444455555556643

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=4.3e-06  Score=76.39  Aligned_cols=109  Identities=20%  Similarity=0.196  Sum_probs=72.0

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC---Cceeeccc-CCCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLD-HRFP  321 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~-e~LP  321 (418)
                      ++..++....  .++||++|||+|..+..|++.   +-.++  ++|.++...+.|++    .|+   +....+++ +.++
T Consensus        50 lL~~L~~~~~--~k~vLEiGt~~GyStl~~a~al~~~g~i~--tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~  125 (219)
T d2avda1          50 LLANLARLIQ--AKKALDLGTFTGYSALALALALPADGRVV--TCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLD  125 (219)
T ss_dssp             HHHHHHHHTT--CCEEEEECCTTSHHHHHHHTTSCTTCEEE--EEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred             HHHHHHHccC--CCeEEEEechhhHHHHHHHHhCCCCceEE--EEeechhHHHHHHHHHHhcCccceEEEEEeehhhcch
Confidence            3444444332  359999999999999999864   34444  36777777665544    354   23344433 2222


Q ss_pred             -----CCCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCc
Q 037675          322 -----FYDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCAN  371 (418)
Q Consensus       322 -----f~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~  371 (418)
                           ..+++||+|+..+    ..  .....++..+.+.|||||.+++++..+.+
T Consensus       126 ~~~~~~~~~~fD~ifiD~----dk--~~y~~~~~~~~~lL~~GGvii~Dn~l~~G  174 (219)
T d2avda1         126 ELLAAGEAGTFDVAVVDA----DK--ENCSAYYERCLQLLRPGGILAVLRVLWRG  174 (219)
T ss_dssp             HHHHTTCTTCEEEEEECS----CS--TTHHHHHHHHHHHEEEEEEEEEECCSGGG
T ss_pred             hhhhhcccCCccEEEEeC----CH--HHHHHHHHHHHHHhcCCcEEEEeCCcccC
Confidence                 3467899999743    22  22347888999999999999998876543

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.92  E-value=3.2e-05  Score=72.69  Aligned_cols=125  Identities=19%  Similarity=0.204  Sum_probs=76.0

Q ss_pred             CCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC-C---------------CceeecccCCCCCCCCc
Q 037675          263 GGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG-L---------------FPLYLSLDHRFPFYDNV  326 (418)
Q Consensus       263 g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG-l---------------i~~~~~~~e~LPf~d~s  326 (418)
                      ...++||.+|+|.|..+..+.+.+..-+ ..+|+++.+++.+++-- .               +.++++++..+--.+++
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v-~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEV-IMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEE-EEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceE-EEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            3457999999999999998888764322 34799999999887521 0               12333433221112578


Q ss_pred             cceEEecCcCcCCCChhHH--HHHHHHhhccccCCcEEEEEe--cccCchhHHHHHHHHHHHcCcEEEE
Q 037675          327 FDLVHASSGLDVGGQPEKL--EFLMFDFDRILRAGGLFWLDN--FYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       327 FDlV~s~~~L~~~~~~~~l--e~~L~Ei~RVLRPGG~~ii~~--~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      ||+|+.... ........+  +.++..+.|.|+|||.+++-.  ++...+.....+..+-+.  |..+.
T Consensus       150 yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~--F~~v~  215 (276)
T d1mjfa_         150 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV--FDRVY  215 (276)
T ss_dssp             EEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH--CSEEE
T ss_pred             CCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhh--CCeeE
Confidence            999997532 222222111  378999999999999886643  333334444444444444  65554

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=1.8e-05  Score=69.67  Aligned_cols=96  Identities=14%  Similarity=0.053  Sum_probs=62.6

Q ss_pred             eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCC--ceeecccC-CCCCCCCccceEEecCcCcCC
Q 037675          267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLF--PLYLSLDH-RFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli--~~~~~~~e-~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      +|||++||+|.++...+.+|..-+ +.+|.+...++.+++    .+.-  .++..++. -+......||+|++.==   +
T Consensus        46 ~vLDlfaGsG~~giealsrGa~~v-~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPP---Y  121 (183)
T d2fpoa1          46 QCLDCFAGSGALGLEALSRYAAGA-TLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP---F  121 (183)
T ss_dssp             EEEETTCTTCHHHHHHHHTTCSEE-EEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS---S
T ss_pred             hhhhhhccccceeeeEEecCccee-EEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCc---c
Confidence            899999999999999999986533 357999887775544    2331  22223322 23345778999998521   1


Q ss_pred             CChhHHHHHHHHhh--ccccCCcEEEEEec
Q 037675          340 GQPEKLEFLMFDFD--RILRAGGLFWLDNF  367 (418)
Q Consensus       340 ~~~~~le~~L~Ei~--RVLRPGG~~ii~~~  367 (418)
                      .. ...+.++.-+.  .+|+|+|.+++...
T Consensus       122 ~~-~~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         122 RR-GLLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             ST-TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             cc-chHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            11 12334554544  57999999988654

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.67  E-value=0.00039  Score=66.21  Aligned_cols=134  Identities=14%  Similarity=0.151  Sum_probs=87.1

Q ss_pred             HHHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHH----HHcCCCcee--ecccCCCCCC
Q 037675          253 LIDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFI----AARGLFPLY--LSLDHRFPFY  323 (418)
Q Consensus       253 ~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a----~eRGli~~~--~~~~e~LPf~  323 (418)
                      +...++...+|.  +|||+.||.|+=+..+++.   ...+  ++.|.++.-++..    ...|+....  .++...++..
T Consensus       107 l~~~~l~~~~g~--~vlD~CAapGgKt~~l~~~~~~~~~i--~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~  182 (313)
T d1ixka_         107 YPPVALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVI--YAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL  182 (313)
T ss_dssp             HHHHHHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEE--EEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG
T ss_pred             chhhcccCCccc--eeeecccchhhhhHhhhhhcccccce--eeeccCHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence            344455666664  8999999999877666653   2233  2468887665443    333554433  3456666777


Q ss_pred             CCccceEEec------CcCcC-----C-CChhHH-------HHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHH
Q 037675          324 DNVFDLVHAS------SGLDV-----G-GQPEKL-------EFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIER  384 (418)
Q Consensus       324 d~sFDlV~s~------~~L~~-----~-~~~~~l-------e~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~  384 (418)
                      +..||.|...      +++..     | ....++       ..+|....+.|||||+++.+.-.-..+|.++.+..++++
T Consensus       183 ~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~  262 (313)
T d1ixka_         183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDN  262 (313)
T ss_dssp             CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhc
Confidence            8899999872      23321     1 112222       246778888999999998877655666767778888888


Q ss_pred             cCcEEE
Q 037675          385 FGYKKL  390 (418)
Q Consensus       385 ~Gfk~l  390 (418)
                      .+++.+
T Consensus       263 ~~~~~~  268 (313)
T d1ixka_         263 FDVELL  268 (313)
T ss_dssp             SSEEEE
T ss_pred             CCCEEe
Confidence            777654

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.66  E-value=0.00052  Score=64.70  Aligned_cols=101  Identities=12%  Similarity=0.063  Sum_probs=62.2

Q ss_pred             CeEEEECCccChHHHHHhhc-----CcEEEEeccCCCHHhHHHHHHc----CC-CceeecccCCCCCCCCccceEEecCc
Q 037675          266 RIGFDIGGGSGTFAARMAER-----NVTVITNTLNVDAPYSEFIAAR----GL-FPLYLSLDHRFPFYDNVFDLVHASSG  335 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~-----gV~vv~~alD~s~~~l~~a~eR----Gl-i~~~~~~~e~LPf~d~sFDlV~s~~~  335 (418)
                      .+|||.+||+|+|...+.++     ...+...++|+++.+++.|+..    +. .....++... ..+...||+|+++==
T Consensus       119 ~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~vi~NPP  197 (328)
T d2f8la1         119 VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISDLP  197 (328)
T ss_dssp             EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEECC
T ss_pred             CEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccc-ccccccccccccCCC
Confidence            48999999999998777542     2333334689999888766532    32 2233333222 234678999999732


Q ss_pred             CcCCCCh---------------hHHHHHHHHhhccccCCcEEEEEec
Q 037675          336 LDVGGQP---------------EKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       336 L~~~~~~---------------~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +......               ..--.++..+.+.|||||++++..+
T Consensus       198 y~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p  244 (328)
T d2f8la1         198 VGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  244 (328)
T ss_dssp             CSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence            2211110               1111367889999999998866554

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.64  E-value=8.3e-05  Score=71.11  Aligned_cols=130  Identities=12%  Similarity=0.167  Sum_probs=77.1

Q ss_pred             CCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc------C-----CCceeecccCC-CCCCCCccce
Q 037675          263 GGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR------G-----LFPLYLSLDHR-FPFYDNVFDL  329 (418)
Q Consensus       263 g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR------G-----li~~~~~~~e~-LPf~d~sFDl  329 (418)
                      ...++||.+|.|.|+.+..+.+. ++.-+ ..+|+++..++.+++.      +     .+.++++++.. +.-.++.||+
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v-~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKA-VMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEE-EEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceE-EEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            34579999999999999988876 33222 2469999999887653      1     12344443322 2224678999


Q ss_pred             EEecCc--CcCCCChhH--HHHHHHHhhccccCCcEEEEEe--cccCchhHHHHHHHHHHHcCcEEEE-EEE
Q 037675          330 VHASSG--LDVGGQPEK--LEFLMFDFDRILRAGGLFWLDN--FYCANDEKKSALTRLIERFGYKKLK-WVV  394 (418)
Q Consensus       330 V~s~~~--L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~~--~~~~~ee~~~~~~~l~~~~Gfk~l~-W~~  394 (418)
                      |+....  ...-.....  -+.++..+.|.|||||.+++-.  +....++..+.+...++.. |..+. |.+
T Consensus       155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~-F~~V~~y~~  225 (312)
T d1uira_         155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYVRSYKN  225 (312)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEEEEEEE
T ss_pred             EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHh-CceEEEEEe
Confidence            997432  111111111  1368899999999999886633  3333334444455555555 54443 543

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.56  E-value=5.2e-05  Score=69.45  Aligned_cols=98  Identities=11%  Similarity=0.147  Sum_probs=66.1

Q ss_pred             CCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHH----cCC---CceeecccC-CCC------CCCCcc
Q 037675          265 IRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAA----RGL---FPLYLSLDH-RFP------FYDNVF  327 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~e----RGl---i~~~~~~~e-~LP------f~d~sF  327 (418)
                      .++||++|+++|..+..|++.   +-.++  ++|.++...+.|++    .|+   +.++.+.+. -+|      ..+++|
T Consensus        60 ~k~iLEiGT~~GyStl~la~al~~~g~v~--tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f  137 (227)
T d1susa1          60 AKNTMEIGVYTGYSLLATALAIPEDGKIL--AMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  137 (227)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEE--EEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred             CCcEEEecchhhhhHHHHHhhCCCCcEEE--EEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence            469999999999999888853   44554  35777666655543    455   333444321 122      236789


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccC
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCA  370 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~  370 (418)
                      |+|+...    ++  .....++..+.+.|||||.+++++..+.
T Consensus       138 D~iFiDa----~k--~~y~~~~e~~~~ll~~gGiii~DNvl~~  174 (227)
T d1susa1         138 DFIFVDA----DK--DNYLNYHKRLIDLVKVGGVIGYDNTLWN  174 (227)
T ss_dssp             SEEEECS----CS--TTHHHHHHHHHHHBCTTCCEEEETTTGG
T ss_pred             eEEEecc----ch--hhhHHHHHHHHhhcCCCcEEEEccCCCC
Confidence            9999743    32  2234788899999999999999887554

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.51  E-value=0.00018  Score=63.58  Aligned_cols=125  Identities=20%  Similarity=0.195  Sum_probs=84.5

Q ss_pred             ccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC--CceeecccCCC-----CCCCCccceEE
Q 037675          259 ALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL--FPLYLSLDHRF-----PFYDNVFDLVH  331 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl--i~~~~~~~e~L-----Pf~d~sFDlV~  331 (418)
                      ...+|  .+++|..+|.|+.+..+.+++-.++  ++|.++.+++.+.++-.  ..++++....+     .+..+.+|.|+
T Consensus        15 ~~~~g--~~~vD~T~G~GGhs~~iL~~~~~vi--aiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl   90 (182)
T d1wg8a2          15 AVRPG--GVYVDATLGGAGHARGILERGGRVI--GLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGIL   90 (182)
T ss_dssp             TCCTT--CEEEETTCTTSHHHHHHHHTTCEEE--EEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCC--CEEEEeCCCCcHHHHHHhcccCcEE--EEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEE
Confidence            34555  4899999999999999999876764  57999999988877532  23444433222     13356799999


Q ss_pred             ecCcCcCC------CChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEE
Q 037675          332 ASSGLDVG------GQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKL  390 (418)
Q Consensus       332 s~~~L~~~------~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l  390 (418)
                      ...-+...      .....+...|.....+|+|||.+++..+...++   ..+...+++.+++.+
T Consensus        91 ~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed---~ivk~~~~e~~~k~i  152 (182)
T d1wg8a2          91 ADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLED---RVVKRFLRESGLKVL  152 (182)
T ss_dssp             EECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHH---HHHHHHHHHHCSEES
T ss_pred             EEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchh---HHHHHHHhhccceec
Confidence            86433311      111234456778899999999998877754322   346677777777765

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=0.0011  Score=61.95  Aligned_cols=154  Identities=12%  Similarity=0.071  Sum_probs=91.7

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhhcC--cEEEEeccCCCHHhHH----HHHHcCCCceee--cccCCC-CCCC
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAERN--VTVITNTLNVDAPYSE----FIAARGLFPLYL--SLDHRF-PFYD  324 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~g--V~vv~~alD~s~~~l~----~a~eRGli~~~~--~~~e~L-Pf~d  324 (418)
                      ...++...+|  .+|||+.+|.|+=+..|++.+  ..++  +.|.++.-++    .+...|+.....  .+.... +...
T Consensus        94 ~~~~L~~~~g--~~vLD~CAaPGgKt~~la~l~~~~~i~--a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~  169 (284)
T d1sqga2          94 CMTWLAPQNG--EHILDLCAAPGGKTTHILEVAPEAQVV--AVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGE  169 (284)
T ss_dssp             HHHHHCCCTT--CEEEEESCTTCHHHHHHHHHCTTCEEE--EEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTT
T ss_pred             cccccCcccc--ceeEeccCccccchhhhhhhhhhhhhh--hhhcchhhhhhHhhhhhcccccceeeeccccccchhccc
Confidence            3344555555  489999999999888887653  3343  4677764443    334446522222  121111 2346


Q ss_pred             CccceEEec------CcCcC-------CCChh--H----HHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHH-
Q 037675          325 NVFDLVHAS------SGLDV-------GGQPE--K----LEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIER-  384 (418)
Q Consensus       325 ~sFDlV~s~------~~L~~-------~~~~~--~----le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~-  384 (418)
                      +.||.|...      +++..       +....  .    -..+|....+.|||||+++.+.-.-..+|.++.+..++++ 
T Consensus       170 ~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~  249 (284)
T d1sqga2         170 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRT  249 (284)
T ss_dssp             CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred             ccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhC
Confidence            789999972      33321       11110  0    1356778888999999998877655666767777877776 


Q ss_pred             cCcEEEEE--------EEcccCCCCccceEEEEEEEc
Q 037675          385 FGYKKLKW--------VVGEKGETGKSEVYLSAVLQK  413 (418)
Q Consensus       385 ~Gfk~l~W--------~~~~k~d~~~~e~~l~Ai~qK  413 (418)
                      -+|+.+..        .+-+.  ..+.+.+|.|++||
T Consensus       250 ~~~~~~~~~~~~~~~~~~~P~--~~~~dGFF~A~l~K  284 (284)
T d1sqga2         250 ADAELCETGTPEQPGKQNLPG--AEEGDGFFYAKLIK  284 (284)
T ss_dssp             TTCEECSSBCSSSBSEEECCC--TTSCCSEEEEEEEC
T ss_pred             CCcEEecCCCCCCCcEEECCC--CCCcccEEEEEEEC
Confidence            45554431        11111  12447799999998

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.44  E-value=3.8e-05  Score=67.75  Aligned_cols=97  Identities=15%  Similarity=0.120  Sum_probs=63.2

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CC---CceeecccCC----CCCCCCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GL---FPLYLSLDHR----FPFYDNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gl---i~~~~~~~e~----LPf~d~sFDlV~s~~  334 (418)
                      .+|||+.||+|.++...+.+|..-+ ..+|.+...++.+++.    +.   +.++.+++.+    +.-....||+|++.=
T Consensus        43 ~~vLDlfaGsG~~g~ea~srGa~~v-~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDP  121 (182)
T d2fhpa1          43 GMALDLYSGSGGLAIEAVSRGMDKS-ICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDP  121 (182)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCSEE-EEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CEEEEcccccccccceeeecchhHH-HHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEech
Confidence            4899999999999999999986433 3479998888766542    33   1233344322    222456899999631


Q ss_pred             cCcCCCChhHHHHHHHHhh--ccccCCcEEEEEec
Q 037675          335 GLDVGGQPEKLEFLMFDFD--RILRAGGLFWLDNF  367 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~--RVLRPGG~~ii~~~  367 (418)
                         ++ .....+..+..+.  .+|+|||++++...
T Consensus       122 ---PY-~~~~~~~~l~~i~~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         122 ---PY-AKQEIVSQLEKMLERQLLTNEAVIVCETD  152 (182)
T ss_dssp             ---CG-GGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             ---hh-hhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence               11 1122345666664  47999999888654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.36  E-value=0.00059  Score=59.72  Aligned_cols=103  Identities=14%  Similarity=0.125  Sum_probs=59.2

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEec
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHAS  333 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~  333 (418)
                      ++....+  .+|||.|||+|.|...+.++   ...+.+  +|+++..+..+..   .....++....+ ....||+|++.
T Consensus        14 l~~~~~~--~~IlDp~~G~G~fl~~~~~~~~~~~~i~g--~ei~~~~~~~~~~---~~~~~~~~~~~~-~~~~fd~ii~n   85 (223)
T d2ih2a1          14 LAEAPRG--GRVLEPACAHGPFLRAFREAHGTAYRFVG--VEIDPKALDLPPW---AEGILADFLLWE-PGEAFDLILGN   85 (223)
T ss_dssp             HCCCCTT--CEEEEETCTTCHHHHHHHHHHCSCSEEEE--EESCTTTCCCCTT---EEEEESCGGGCC-CSSCEEEEEEC
T ss_pred             hcCCCCc--CEEEECCCchHHHHHHHHHhccccceEEe--eecCHHHHhhccc---ceeeeeehhccc-cccccceeccc
Confidence            3334444  58999999999999888765   244543  5665543322111   122333333322 35789999997


Q ss_pred             CcCcCCC--C-----------------------hh-HHHHHHHHhhccccCCcEEEEEec
Q 037675          334 SGLDVGG--Q-----------------------PE-KLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       334 ~~L~~~~--~-----------------------~~-~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      --+....  .                       .. .-..++....+.|||||++++..+
T Consensus        86 pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p  145 (223)
T d2ih2a1          86 PPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP  145 (223)
T ss_dssp             CCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence            4332100  0                       00 112556788899999999866554

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.0032  Score=59.69  Aligned_cols=135  Identities=16%  Similarity=0.158  Sum_probs=80.6

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHH----cCCCc--eeecccCC----CCCCCCccceEEecC
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAA----RGLFP--LYLSLDHR----FPFYDNVFDLVHASS  334 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~e----RGli~--~~~~~~e~----LPf~d~sFDlV~s~~  334 (418)
                      ..+|||+-||+|.|+..|+++.-.|+  ++|.++..++.|++    .|+..  ++.++.+.    .+.....||+|+.  
T Consensus       213 ~~~vlDLycG~G~fsl~La~~~~~V~--gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vil--  288 (358)
T d1uwva2         213 EDRVLDLFCGMGNFTLPLATQAASVV--GVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL--  288 (358)
T ss_dssp             TCEEEEESCTTTTTHHHHHTTSSEEE--EEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE--
T ss_pred             CceEEEecccccccchhccccccEEE--eccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEe--
Confidence            35899999999999999999876665  47888888776543    45532  33443332    3344678999885  


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEEEEEcccCCCCccceEEEEEEEc
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLKWVVGEKGETGKSEVYLSAVLQK  413 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d~~~~e~~l~Ai~qK  413 (418)
                        .  +++.++..++.++.+ ++|.-.++|+   |+.......+.. +.+.||+..+....+.- +...++=..++++|
T Consensus       289 --D--PPR~G~~~~~~~l~~-~~~~~ivYVS---Cnp~TlaRDl~~-l~~~gy~l~~i~~~D~F-P~T~HvE~v~~l~R  357 (358)
T d1uwva2         289 --D--PARAGAAGVMQQIIK-LEPIRIVYVS---CNPATLARDSEA-LLKAGYTIARLAMLDMF-PHTGHLESMVLFSR  357 (358)
T ss_dssp             --C--CCTTCCHHHHHHHHH-HCCSEEEEEE---SCHHHHHHHHHH-HHHTTCEEEEEEEECCS-TTSSCCEEEEEEEC
T ss_pred             --C--CCCccHHHHHHHHHH-cCCCEEEEEe---CCHHHHHHHHHH-HHHCCCeEeEEEEEecC-CCCccEEEEEEEEe
Confidence              2  233444566666665 4787777776   333333333333 34568976654443321 22223223555654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.22  E-value=0.0029  Score=59.42  Aligned_cols=102  Identities=19%  Similarity=0.206  Sum_probs=67.5

Q ss_pred             CCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcC----------CCceeeccc-CCC-CCCCCccce
Q 037675          263 GGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARG----------LFPLYLSLD-HRF-PFYDNVFDL  329 (418)
Q Consensus       263 g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRG----------li~~~~~~~-e~L-Pf~d~sFDl  329 (418)
                      ...++||=+|-|.|+.+..+.+. ++.-+ ..+|+++..++.+++--          -+.++.+++ +-+ -..++.||+
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i-~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv  157 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQI-DMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  157 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEE-EEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceee-EEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence            34679999999999999999887 54332 34799999998876621          122333332 122 134578999


Q ss_pred             EEecCcCcCCCChhH--HHHHHHHhhccccCCcEEEEEe
Q 037675          330 VHASSGLDVGGQPEK--LEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       330 V~s~~~L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      |+... .........  -+.++..+.|.|+|||.+++-.
T Consensus       158 Ii~D~-~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         158 VIVDS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             EEECC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEcC-CCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            99743 222221111  1368999999999999987743

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.20  E-value=0.0004  Score=65.80  Aligned_cols=125  Identities=18%  Similarity=0.145  Sum_probs=74.2

Q ss_pred             CCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcC----------CCceeecccC-CCCCCCCccceEE
Q 037675          264 GIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARG----------LFPLYLSLDH-RFPFYDNVFDLVH  331 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRG----------li~~~~~~~e-~LPf~d~sFDlV~  331 (418)
                      ..++||=+|.|.|+.+..+.+. ++.-+ ..+|+++.+++.+++.-          -+.++++++. -+--.++.||+|+
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i-~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKA-ILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEE-EEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceE-EEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            4579999999999999999887 34332 34799999998876631          1233333221 1222467899999


Q ss_pred             ecCcCcCCCChhH--HHHHHHHhhccccCCcEEEEEec--ccCchhHHHHHHHHHHHcCcEEEE
Q 037675          332 ASSGLDVGGQPEK--LEFLMFDFDRILRAGGLFWLDNF--YCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       332 s~~~L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~~~--~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      +...-........  -..++..+.|.|+|||.+++-..  +...+.....+..+ +.. |..+.
T Consensus       168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl-~~v-F~~v~  229 (295)
T d1inla_         168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRI-SKV-FPITR  229 (295)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHH-HHH-CSEEE
T ss_pred             EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHH-Hhh-cceeE
Confidence            7532111111110  13789999999999998866432  23333334434444 443 55444

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.19  E-value=0.00057  Score=62.48  Aligned_cols=79  Identities=19%  Similarity=0.251  Sum_probs=55.6

Q ss_pred             HHHHHHcc-CCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC----CceeecccCCCCCCCCcc
Q 037675          253 LIDDVLAL-GSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL----FPLYLSLDHRFPFYDNVF  327 (418)
Q Consensus       253 ~I~~lL~l-~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl----i~~~~~~~e~LPf~d~sF  327 (418)
                      .++.++.. ...+..+|||||||+|.++..|++++..++  ++|+++.+++..+++-.    +.++++++..++++....
T Consensus         9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~--avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~   86 (235)
T d1qama_           9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVT--AIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS   86 (235)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEE--EECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceE--EEeeccchHHHHHHHhhcccchhhhhhhhhhcccccccc
Confidence            44444442 222335899999999999999999876654  47999999998877632    245567888888776555


Q ss_pred             ceEEec
Q 037675          328 DLVHAS  333 (418)
Q Consensus       328 DlV~s~  333 (418)
                      ..|+++
T Consensus        87 ~~vv~N   92 (235)
T d1qama_          87 YKIFGN   92 (235)
T ss_dssp             CEEEEE
T ss_pred             ceeeee
Confidence            556654

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.19  E-value=4.2e-05  Score=70.83  Aligned_cols=78  Identities=15%  Similarity=0.209  Sum_probs=58.1

Q ss_pred             HHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcC----CCceeecccCCCCCCCCccceEEe
Q 037675          257 VLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARG----LFPLYLSLDHRFPFYDNVFDLVHA  332 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRG----li~~~~~~~e~LPf~d~sFDlV~s  332 (418)
                      .+.+.++  .+|||||||+|.++..|++++..++  ++|.++.+++.++++-    -+.++++++.+++++...++.|++
T Consensus        24 ~~~~~~~--d~VLEIGpG~G~LT~~L~~~~~~v~--aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~vv~   99 (245)
T d1yuba_          24 QLNLKET--DTVYEIGTGKGHLTTKLAKISKQVT--SIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVG   99 (245)
T ss_dssp             HCCCCSS--EEEEECSCCCSSCSHHHHHHSSEEE--ESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEEEE
T ss_pred             hcCCCCC--CeEEEECCCccHHHHHHHhhcCcee--EeeecccchhhhhhhhhhccchhhhhhhhhccccccceeeeEee
Confidence            3344444  5899999999999999999987765  5788888877665542    124456788899998888888888


Q ss_pred             cCcCcC
Q 037675          333 SSGLDV  338 (418)
Q Consensus       333 ~~~L~~  338 (418)
                      +.-.+.
T Consensus       100 NLPY~I  105 (245)
T d1yuba_         100 NIPYHL  105 (245)
T ss_dssp             ECCSSS
T ss_pred             eeehhh
Confidence            765543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.13  E-value=0.00025  Score=65.95  Aligned_cols=119  Identities=13%  Similarity=0.040  Sum_probs=66.5

Q ss_pred             CeEEEECCccChHHHHHhhcC----cEEEEeccCCCH-HhHHHHHHcCCCceee-cccCCCCCCCCccceEEecCcCcCC
Q 037675          266 RIGFDIGGGSGTFAARMAERN----VTVITNTLNVDA-PYSEFIAARGLFPLYL-SLDHRFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~g----V~vv~~alD~s~-~~l~~a~eRGli~~~~-~~~e~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      .+|+|+|||.|+|+.+++++.    |....+++|.++ ++.......+++.... .+...  .++...|+|+|..+-+ .
T Consensus        68 ~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcDm~es-s  144 (257)
T d2p41a1          68 GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFF--IPPERCDTLLCDIGES-S  144 (257)
T ss_dssp             EEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTT--SCCCCCSEEEECCCCC-C
T ss_pred             CeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHh--cCCCcCCEEEeeCCCC-C
Confidence            379999999999999999873    233323355432 1111011111211111 12333  3478899999975432 1


Q ss_pred             CCh----hHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCc
Q 037675          340 GQP----EKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGY  387 (418)
Q Consensus       340 ~~~----~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gf  387 (418)
                      ..+    ...-.+|.=+.+.|+|||-|++-.+....++..+.+..+-..+|=
T Consensus       145 ~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~fgg  196 (257)
T d2p41a1         145 PNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGG  196 (257)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHCC
T ss_pred             CCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHhCC
Confidence            111    111245555668899999998866655556655555555555443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.03  E-value=0.00066  Score=64.79  Aligned_cols=102  Identities=17%  Similarity=0.169  Sum_probs=64.1

Q ss_pred             CCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCC----------CceeecccC-CCCCCCCccceE
Q 037675          263 GGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGL----------FPLYLSLDH-RFPFYDNVFDLV  330 (418)
Q Consensus       263 g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGl----------i~~~~~~~e-~LPf~d~sFDlV  330 (418)
                      ...++||-+|.|.|+.+..+.+. ++.-+ ..+|+++..++.+++--.          +.++++++. -+--.++.||+|
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v-~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKV-TMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEE-EEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceE-EEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence            34579999999999999999986 44322 347999999998877311          112222221 112246789999


Q ss_pred             EecCcCcCCCChhH--HHHHHHHhhccccCCcEEEEEe
Q 037675          331 HASSGLDVGGQPEK--LEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       331 ~s~~~L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +.... ........  -..++..+.|.|+|||.++.-.
T Consensus       184 I~D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         184 ITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             EECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            98532 22111111  2467899999999999987643

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.02  E-value=0.0013  Score=61.49  Aligned_cols=123  Identities=13%  Similarity=0.215  Sum_probs=74.3

Q ss_pred             CCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHc-----CC-----CceeecccCC-CCCCCCccceEE
Q 037675          264 GIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAAR-----GL-----FPLYLSLDHR-FPFYDNVFDLVH  331 (418)
Q Consensus       264 ~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eR-----Gl-----i~~~~~~~e~-LPf~d~sFDlV~  331 (418)
                      ..++||-+|.|.|+.+..+.++ ++.-+ ..+|+++..++.+++-     +.     +.++.+++.. +--.++.||+|+
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i-~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKA-TLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEE-EEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceE-EEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            4579999999999999999886 44332 2469999999887663     11     1233433221 223467899999


Q ss_pred             ecCcCcCCCChhH--HHHHHHHhhccccCCcEEEEEec--ccCchhHHHHHHHHHHHcCcEEE
Q 037675          332 ASSGLDVGGQPEK--LEFLMFDFDRILRAGGLFWLDNF--YCANDEKKSALTRLIERFGYKKL  390 (418)
Q Consensus       332 s~~~L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~~~--~~~~ee~~~~~~~l~~~~Gfk~l  390 (418)
                      .... ........  -+.++..+.|.|+|||.++.-..  +...+... .+.+.+++. |..+
T Consensus       154 ~D~~-~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~-~i~~tl~~~-F~~v  213 (274)
T d1iy9a_         154 VDST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELIT-NVQRDVKEI-FPIT  213 (274)
T ss_dssp             ESCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHH-HHHHHHHTT-CSEE
T ss_pred             EcCC-CCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHH-HHHHhhhhh-cCce
Confidence            8532 11111100  12788999999999998866432  22223333 344444544 4444

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0033  Score=58.93  Aligned_cols=125  Identities=16%  Similarity=0.181  Sum_probs=74.1

Q ss_pred             CCCCeEEEECCccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcC----------CCceeecccC-CCCCCCCccceE
Q 037675          263 GGIRIGFDIGGGSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARG----------LFPLYLSLDH-RFPFYDNVFDLV  330 (418)
Q Consensus       263 g~~r~VLDvGCGtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRG----------li~~~~~~~e-~LPf~d~sFDlV  330 (418)
                      ...++||-+|.|.|+.+..+.+. ++.-+ ..+|+++.+++.+++.-          -+.++++++. -+--.+++||+|
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v-~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESV-VQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEE-EEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCccee-eeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            34579999999999999999987 44333 24799999998886631          1233343321 111245789999


Q ss_pred             EecCcCcCCCChhH--HHHHHHHhhccccCCcEEEEEec--ccCchhHHHHHHHHHHHcCcEEEE
Q 037675          331 HASSGLDVGGQPEK--LEFLMFDFDRILRAGGLFWLDNF--YCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       331 ~s~~~L~~~~~~~~--le~~L~Ei~RVLRPGG~~ii~~~--~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      ++.. .........  -+.++..+.|.|+|||.+++-..  ....+.... +...++.. |..+.
T Consensus       156 i~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~-~~~tl~~~-F~~v~  217 (285)
T d2o07a1         156 ITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKE-MRQFCQSL-FPVVA  217 (285)
T ss_dssp             EEEC-C-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHH-HHHHHHHH-CSEEE
T ss_pred             EEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHH-HHHHHHhc-CCeee
Confidence            9853 222221111  12678999999999999876432  222233333 33334443 55543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=96.87  E-value=0.0013  Score=57.42  Aligned_cols=97  Identities=14%  Similarity=0.072  Sum_probs=61.4

Q ss_pred             eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc----CCCc--e--eecc---cCCCCCCCCccceEEecCc
Q 037675          267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR----GLFP--L--YLSL---DHRFPFYDNVFDLVHASSG  335 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR----Gli~--~--~~~~---~e~LPf~d~sFDlV~s~~~  335 (418)
                      +|||+-||||.++...++||..-+ +.+|.+...++.+++.    +...  .  ...+   ..........||+|++.  
T Consensus        46 ~vLDlFaGsG~~glEalSRGA~~v-~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD--  122 (183)
T d2ifta1          46 ECLDGFAGSGSLGFEALSRQAKKV-TFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD--  122 (183)
T ss_dssp             EEEETTCTTCHHHHHHHHTTCSEE-EEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC--
T ss_pred             eEeecccCccceeeeeeeecceee-EEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec--
Confidence            899999999999999999996433 2479988777655442    3311  1  1122   12223445679999974  


Q ss_pred             CcCCCChhHHHHHHHHhh--ccccCCcEEEEEecc
Q 037675          336 LDVGGQPEKLEFLMFDFD--RILRAGGLFWLDNFY  368 (418)
Q Consensus       336 L~~~~~~~~le~~L~Ei~--RVLRPGG~~ii~~~~  368 (418)
                        +--.....+.++.-+.  .+|+++|++++....
T Consensus       123 --PPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         123 --PPFHFNLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             --CCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             --hhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence              1111122345555553  589999999887653

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.0031  Score=56.49  Aligned_cols=91  Identities=16%  Similarity=0.115  Sum_probs=61.5

Q ss_pred             CeEEEECCccChHHHHHhhc--CcEEEEeccCCCHH---hHHH-HHHcCCC--ceeecccCCCCCCCCccceEEecCcCc
Q 037675          266 RIGFDIGGGSGTFAARMAER--NVTVITNTLNVDAP---YSEF-IAARGLF--PLYLSLDHRFPFYDNVFDLVHASSGLD  337 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~--gV~vv~~alD~s~~---~l~~-a~eRGli--~~~~~~~e~LPf~d~sFDlV~s~~~L~  337 (418)
                      .+++|+|+|.|--|.-|+=.  +..+.  -+|....   +++. +.+-|+.  .++++.++.+. .+..||+|.|. ++.
T Consensus        67 ~~ilDiGsGaG~PGi~laI~~p~~~~~--Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sR-A~~  142 (207)
T d1jsxa_          67 ERFIDVGTGPGLPGIPLSIVRPEAHFT--LLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISR-AFA  142 (207)
T ss_dssp             SEEEEETCTTTTTHHHHHHHCTTSEEE--EEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECS-CSS
T ss_pred             CceeeeeccCCceeeehhhhcccceEE--EEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhh-hhc
Confidence            38999999999888777643  34442  2588764   4433 4445663  34456777764 46689998774 343


Q ss_pred             CCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          338 VGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       338 ~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      .      +..++.-....+++||.+++.-
T Consensus       143 ~------~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         143 S------LNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             S------HHHHHHHHTTSEEEEEEEEEEE
T ss_pred             C------HHHHHHHHHHhcCCCcEEEEEC
Confidence            2      3378888899999999986653

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=96.58  E-value=0.0086  Score=54.73  Aligned_cols=117  Identities=19%  Similarity=0.159  Sum_probs=73.0

Q ss_pred             CCeEEEECCccChHHHHHhh-c-CcEEEEeccCCCHH---hHHH-HHHcCCCc--eeecccCCCCC---CCCccceEEec
Q 037675          265 IRIGFDIGGGSGTFAARMAE-R-NVTVITNTLNVDAP---YSEF-IAARGLFP--LYLSLDHRFPF---YDNVFDLVHAS  333 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~-~-gV~vv~~alD~s~~---~l~~-a~eRGli~--~~~~~~e~LPf---~d~sFDlV~s~  333 (418)
                      ..+++|||+|.|--|.-|+= . +..+.  -+|....   +++. +.+-|+..  .+++.+|.+..   ..+.||+|.|-
T Consensus        71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~--Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR  148 (239)
T d1xdza_          71 VNTICDVGAGAGFPSLPIKICFPHLHVT--IVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (239)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEE--EEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCeEEeecCCCchHHHHHHHhCCCccce--eecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence            35899999999988877763 2 33322  2588764   4443 34446633  34455555532   24689999985


Q ss_pred             CcCcCCCChhHHHHHHHHhhccccCCcEEEEEecccCchhHHHHHHHHHHHcCcEEEE
Q 037675          334 SGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTRLIERFGYKKLK  391 (418)
Q Consensus       334 ~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~l~~~~Gfk~l~  391 (418)
                      .+-       .+..++.-....+++||.+++--.....+|+. .....+..+|++...
T Consensus       149 Ava-------~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~-~a~~~~~~~~~~~~~  198 (239)
T d1xdza_         149 AVA-------RLSVLSELCLPLVKKNGLFVALKAASAEEELN-AGKKAITTLGGELEN  198 (239)
T ss_dssp             CCS-------CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHH-HHHHHHHHTTEEEEE
T ss_pred             hhh-------CHHHHHHHHhhhcccCCEEEEECCCChHHHHH-HHHHHHHHcCCEEEE
Confidence            432       23478888999999999986653333333433 245567788887543

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.24  E-value=0.0037  Score=56.91  Aligned_cols=95  Identities=14%  Similarity=0.196  Sum_probs=53.5

Q ss_pred             CeEEEECCccChHHHHHhh----c--CcEEEEeccCCCHHhHHHH-HHcCCCceeecccCCCC----CCCCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAE----R--NVTVITNTLNVDAPYSEFI-AARGLFPLYLSLDHRFP----FYDNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~----~--gV~vv~~alD~s~~~l~~a-~eRGli~~~~~~~e~LP----f~d~sFDlV~s~~  334 (418)
                      .+||++|++.|+.+..+++    .  +..+++  +|+.+...... ....-+.++.++.....    +....+|+|+...
T Consensus        82 k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~g--iDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~  159 (232)
T d2bm8a1          82 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIG--IDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  159 (232)
T ss_dssp             SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEE--EESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CEEEEECCCCchHHHHHHHHHHhcCCCceEEe--cCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence            4899999999986655542    2  345654  45433222111 11122345555433222    2355789998755


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      . |.. . ..+..  .+....|+|||++++.|.
T Consensus       160 ~-H~~-~-~v~~~--~~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         160 A-HAN-T-FNIMK--WAVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             S-CSS-H-HHHHH--HHHHHTCCTTCEEEECSC
T ss_pred             C-cch-H-HHHHH--HHHhcccCcCCEEEEEcC
Confidence            4 332 1 11112  246689999999999886

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.85  E-value=0.0048  Score=52.32  Aligned_cols=98  Identities=13%  Similarity=0.088  Sum_probs=62.7

Q ss_pred             ccCCCCCCeEEEECCc-cChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeec--ccCCCCCCCCccceEEecC
Q 037675          259 ALGSGGIRIGFDIGGG-SGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLS--LDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCG-tG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~--~~e~LPf~d~sFDlV~s~~  334 (418)
                      .+++|+  +||-+|+| .|.++..+++. |..++  ++|.++..++.+++-|...++..  ..+...-..+.||.|+..-
T Consensus        24 ~~~~g~--~vlI~GaG~vG~~a~q~ak~~G~~vi--~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~   99 (168)
T d1piwa2          24 GCGPGK--KVGIVGLGGIGSMGTLISKAMGAETY--VISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCA   99 (168)
T ss_dssp             TCSTTC--EEEEECCSHHHHHHHHHHHHHTCEEE--EEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred             CcCCCC--EEEEECCCCcchhHHHHhhhcccccc--ccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEe
Confidence            456664  89999998 57777777754 87765  46778888899999886333322  1111112345799887632


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .-...       ..+....++|||||++++...
T Consensus       100 ~~~~~-------~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2         100 SSLTD-------IDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             SCSTT-------CCTTTGGGGEEEEEEEEECCC
T ss_pred             cCCcc-------chHHHHHHHhhccceEEEecc
Confidence            21111       112367889999999987653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.83  E-value=0.0038  Score=54.88  Aligned_cols=107  Identities=18%  Similarity=0.257  Sum_probs=66.9

Q ss_pred             HccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecc-cCCCC------CCCCccc
Q 037675          258 LALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSL-DHRFP------FYDNVFD  328 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~-~e~LP------f~d~sFD  328 (418)
                      ..+++|+  +||-+|||. |..++.+++. +...+ +++|.++..++.+++.|. ...... .+.+-      .....+|
T Consensus        21 a~v~~G~--tVlV~GaG~vGl~a~~~ak~~ga~~V-i~~d~~~~rl~~a~~~Ga-~~~~~~~~~~~~~~i~~~t~g~g~D   96 (195)
T d1kola2          21 AGVGPGS--TVYVAGAGPVGLAAAASARLLGAAVV-IVGDLNPARLAHAKAQGF-EIADLSLDTPLHEQIAALLGEPEVD   96 (195)
T ss_dssp             TTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEE-EEEESCHHHHHHHHHTTC-EEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred             hCCCCCC--EEEEECcCHHHHHHHHHHHhhcccce-eeecccchhhHhhhhccc-cEEEeCCCcCHHHHHHHHhCCCCcE
Confidence            4577775  899999998 5566777754 65332 346999999999999987 333321 11110      2344688


Q ss_pred             eEEecCcCc------CCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          329 LVHASSGLD------VGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       329 lV~s~~~L~------~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      .++-.--..      .......-...|.+..+++||||.+.+...+
T Consensus        97 ~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~  142 (195)
T d1kola2          97 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY  142 (195)
T ss_dssp             EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred             EEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence            888532111      0000001126788999999999999887643

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.58  E-value=0.029  Score=46.92  Aligned_cols=97  Identities=18%  Similarity=0.115  Sum_probs=64.1

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeeccc--C-------CC-CCCCCc
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLD--H-------RF-PFYDNV  326 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~--e-------~L-Pf~d~s  326 (418)
                      .+++|+  +||=+|||. |.++..+++. |..++  ++|.++.-++.+++.|....+....  +       .+ ....+.
T Consensus        23 ~~~~g~--~vlV~G~G~vG~~~~~~ak~~Ga~vi--~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g   98 (170)
T d1e3ja2          23 GVQLGT--TVLVIGAGPIGLVSVLAAKAYGAFVV--CTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDL   98 (170)
T ss_dssp             TCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEE--EEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred             CCCCCC--EEEEEcccccchhhHhhHhhhccccc--ccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccC
Confidence            466664  899999984 7777777764 77765  4799999999999988633332111  0       00 011345


Q ss_pred             cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      +|+|+-.-     ..+    ..+.+..++|||||++++....
T Consensus        99 ~D~vid~~-----g~~----~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          99 PNVTIDCS-----GNE----KCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             CSEEEECS-----CCH----HHHHHHHHHSCTTCEEEECSCC
T ss_pred             CceeeecC-----CCh----HHHHHHHHHHhcCCceEEEecC
Confidence            78887522     111    5677888999999999877654

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.014  Score=54.27  Aligned_cols=65  Identities=17%  Similarity=0.297  Sum_probs=46.4

Q ss_pred             CeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHc--C-----CCceeecccCCCCCCCCccceEEecC
Q 037675          266 RIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAAR--G-----LFPLYLSLDHRFPFYDNVFDLVHASS  334 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eR--G-----li~~~~~~~e~LPf~d~sFDlV~s~~  334 (418)
                      .+||+||+|+|.++..|++++..++  +++.++.+++...++  +     -+.+++++....+++.  ++.|+++-
T Consensus        23 d~VlEIGPG~G~LT~~Ll~~~~~v~--aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~--~~~vV~NL   94 (278)
T d1zq9a1          23 DVVLEVGPGTGNMTVKLLEKAKKVV--ACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF--FDTCVANL   94 (278)
T ss_dssp             CEEEEECCTTSTTHHHHHHHSSEEE--EEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC--CSEEEEEC
T ss_pred             CEEEEECCCchHHHHHHHhcCCcEE--EEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh--hhhhhcch
Confidence            5899999999999999999986664  578888888876653  1     1244556666555443  56677653

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.083  Score=48.89  Aligned_cols=127  Identities=9%  Similarity=-0.012  Sum_probs=71.2

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhhc---CcEEEEeccCCCHHhHHHH----HHcCCCce--eecccCCCCCC-
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAER---NVTVITNTLNVDAPYSEFI----AARGLFPL--YLSLDHRFPFY-  323 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~---gV~vv~~alD~s~~~l~~a----~eRGli~~--~~~~~e~LPf~-  323 (418)
                      ...++...+|.  +|||+.||.|+=+.+|++.   +..+  ++.|+++.-++.+    ..-|+...  ...+...++-. 
T Consensus        86 ~~~~L~~~~g~--~vLD~cAapGgKt~~la~l~~~~~~i--~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~  161 (293)
T d2b9ea1          86 PAMLLDPPPGS--HVIDACAAPGNKTSHLAALLKNQGKI--FAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD  161 (293)
T ss_dssp             HHHHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEE--EEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC
T ss_pred             cccccCCCccc--eEEecccchhhHHHHHHHHhcCCceE--eeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccc
Confidence            34455556664  8999999999988887764   2333  3568887655443    33465332  33344443322 


Q ss_pred             --CCccceEEec------CcCcC-----C----CC--hhHH----HHHHHHhhccccCCcEEEEEecccCchhHHHHHHH
Q 037675          324 --DNVFDLVHAS------SGLDV-----G----GQ--PEKL----EFLMFDFDRILRAGGLFWLDNFYCANDEKKSALTR  380 (418)
Q Consensus       324 --d~sFDlV~s~------~~L~~-----~----~~--~~~l----e~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~~~  380 (418)
                        .+.||.|...      +++..     |    .+  ...+    ..++.... .|||||+++.+.-.-..+|.++.+..
T Consensus       162 ~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~  240 (293)
T d2b9ea1         162 PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRD  240 (293)
T ss_dssp             GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHH
T ss_pred             cccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHH
Confidence              2569999873      22211     1    11  0111    12333333 47999998777655555666667777


Q ss_pred             HHHHc
Q 037675          381 LIERF  385 (418)
Q Consensus       381 l~~~~  385 (418)
                      ++++.
T Consensus       241 ~L~~~  245 (293)
T d2b9ea1         241 ALQQN  245 (293)
T ss_dssp             HHTTS
T ss_pred             HHHhC
Confidence            77764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.20  E-value=0.015  Score=49.51  Aligned_cols=96  Identities=16%  Similarity=0.194  Sum_probs=62.4

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecccCC-------C-C-CCCCc
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLDHR-------F-P-FYDNV  326 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~-------L-P-f~d~s  326 (418)
                      .+++|+  +||-+|+|. |.++..+++. |. .++  ++|.++..++.+++-|....+....+.       + . ...+.
T Consensus        25 ~~~~G~--~VlV~GaG~iG~~~~~~ak~~Ga~~Vi--~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g  100 (182)
T d1vj0a2          25 ESFAGK--TVVIQGAGPLGLFGVVIARSLGAENVI--VIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRG  100 (182)
T ss_dssp             SCCBTC--EEEEECCSHHHHHHHHHHHHTTBSEEE--EEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSC
T ss_pred             CCCCCC--EEEEECCCccchhheeccccccccccc--ccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCC
Confidence            355664  899999984 7777777765 76 443  468999999999998863332211111       0 1 12345


Q ss_pred             cceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          327 FDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       327 FDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +|+|+-.-     ..+    ..+.+..+.|||||.+++...
T Consensus       101 ~Dvvid~v-----G~~----~~~~~a~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2         101 ADFILEAT-----GDS----RALLEGSELLRRGGFYSVAGV  132 (182)
T ss_dssp             EEEEEECS-----SCT----THHHHHHHHEEEEEEEEECCC
T ss_pred             ceEEeecC-----Cch----hHHHHHHHHhcCCCEEEEEee
Confidence            89988532     111    456688899999999977654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.012  Score=53.93  Aligned_cols=61  Identities=16%  Similarity=0.316  Sum_probs=44.3

Q ss_pred             HccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCC----CceeecccCCCCC
Q 037675          258 LALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGL----FPLYLSLDHRFPF  322 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGl----i~~~~~~~e~LPf  322 (418)
                      +.+.++  ..||+||||+|.++..|++++..++  ++|+++.+++..+++-.    +.++++++..+++
T Consensus        17 ~~~~~~--d~vlEIGpG~G~LT~~Ll~~~~~v~--aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_          17 INPQKG--QAMVEIGPGLAALTEPVGERLDQLT--VIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HCCCTT--CCEEEECCTTTTTHHHHHTTCSCEE--EECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred             cCCCCC--CEEEEECCCchHHHHHHHccCCceE--EEEeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence            344444  5899999999999999999976654  47999999988777532    2345566666554

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.30  E-value=0.046  Score=46.56  Aligned_cols=97  Identities=15%  Similarity=0.127  Sum_probs=63.6

Q ss_pred             HccCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecccCCC-----C-CCCCccc
Q 037675          258 LALGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF-----P-FYDNVFD  328 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L-----P-f~d~sFD  328 (418)
                      ..+++|+  +||=+|||. |.++..+++. |. .++  ++|.++.-++.+++-|....+....+.+     . ....-||
T Consensus        23 a~~~~g~--~VlI~GaG~vGl~~~q~ak~~Ga~~Vi--~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D   98 (174)
T d1jqba2          23 ADIEMGS--SVVVIGIGAVGLMGIAGAKLRGAGRII--GVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVD   98 (174)
T ss_dssp             TTCCTTC--CEEEECCSHHHHHHHHHHHTTTCSCEE--EECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEE
T ss_pred             hCCCCCC--EEEEEcCCcchhhhhhhhhcccccccc--cccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcc
Confidence            4577775  788899987 7788888775 64 332  4699999999999988633332211111     0 1234599


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +|+-.-.     .+    ..+.+..+.|||||.+++...
T Consensus        99 ~vid~~g-----~~----~~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2          99 RVIMAGG-----GS----ETLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             EEEECSS-----CT----THHHHHHHHEEEEEEEEECCC
T ss_pred             eEEEccC-----CH----HHHHHHHHHHhcCCEEEEEee
Confidence            8875321     11    345677899999999988654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.24  E-value=0.043  Score=46.45  Aligned_cols=97  Identities=14%  Similarity=0.060  Sum_probs=62.7

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC-----CCCCCccceEE
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF-----PFYDNVFDLVH  331 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L-----Pf~d~sFDlV~  331 (418)
                      .+++|+  +||=+|||. |..+..+++. |..++ ++.|.++.-++.+++-|...++....+.+     .+.++.||+|+
T Consensus        25 ~~~~g~--~VlI~G~G~iG~~~~~~ak~~g~~~v-~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vi  101 (174)
T d1f8fa2          25 KVTPAS--SFVTWGAGAVGLSALLAAKVCGASII-IAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFAL  101 (174)
T ss_dssp             CCCTTC--EEEEESCSHHHHHHHHHHHHHTCSEE-EEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEE
T ss_pred             CCCCCC--EEEEeCCCHHHhhhhhccccccccee-eeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEE
Confidence            456664  788899986 4455666654 65443 34688999999999988744443211111     12345799888


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      -.-     ..    +..+.+..+++||+|.+++...
T Consensus       102 d~~-----G~----~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2         102 EST-----GS----PEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             ECS-----CC----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             EcC-----Cc----HHHHHHHHhcccCceEEEEEee
Confidence            421     11    1567788999999999977653

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.17  E-value=0.014  Score=56.61  Aligned_cols=94  Identities=15%  Similarity=0.094  Sum_probs=61.9

Q ss_pred             CeEEEECCccChHHHHHh-hcCcEEEEeccCCCHHhHHHHHHc----CCCc-----------------eeecccCCCCC-
Q 037675          266 RIGFDIGGGSGTFAARMA-ERNVTVITNTLNVDAPYSEFIAAR----GLFP-----------------LYLSLDHRFPF-  322 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La-~~gV~vv~~alD~s~~~l~~a~eR----Gli~-----------------~~~~~~e~LPf-  322 (418)
                      .+|||..||+|.++.+.+ +.++.-| ++.|+++..++.+++.    ++-.                 ....++..+.. 
T Consensus        47 ~~vLD~~sasG~rsiRya~E~~~~~V-~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~  125 (375)
T d2dula1          47 KIVLDALSATGIRGIRFALETPAEEV-WLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  125 (375)
T ss_dssp             SEEEESSCTTSHHHHHHHHHSSCSEE-EEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CEEEEcCCCccHHHHHHHHhCCCCEE-EEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence            489999999999998654 4565332 3469998888766543    3211                 01112111111 


Q ss_pred             CCCccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          323 YDNVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       323 ~d~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ..+.||+|..    .++..+.   .+|.-..|.+|.||++.++..
T Consensus       126 ~~~~fDvIDi----DPfGs~~---pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         126 RHRYFHFIDL----DPFGSPM---EFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             STTCEEEEEE----CCSSCCH---HHHHHHHHHEEEEEEEEEEEC
T ss_pred             hcCcCCcccC----CCCCCcH---HHHHHHHHHhccCCEEEEEec
Confidence            2456999985    4555554   788999999999999988764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.093  Score=43.89  Aligned_cols=99  Identities=13%  Similarity=0.033  Sum_probs=63.7

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC--------CCCCccc
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP--------FYDNVFD  328 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP--------f~d~sFD  328 (418)
                      .+++|+  +||=+|||. |.++..+++. |...+ +++|.++..++.+++-|....+....+...        .....+|
T Consensus        23 ~~~~gd--~VlI~G~G~iG~~~~~~a~~~G~~~V-i~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~D   99 (171)
T d1pl8a2          23 GVTLGH--KVLVCGAGPIGMVTLLVAKAMGAAQV-VVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPE   99 (171)
T ss_dssp             TCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEE-EEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCS
T ss_pred             CCCCCC--EEEEECCCccHHHHHHHHHHcCCceE-EeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCce
Confidence            466664  899999987 4555666654 76322 347999999999999887333222111110        1234688


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEeccc
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFYC  369 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~~  369 (418)
                      +|+-..     ..    +..+......+||||++++.....
T Consensus       100 vvid~~-----G~----~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2         100 VTIECT-----GA----EASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             EEEECS-----CC----HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             EEEecc-----CC----chhHHHHHHHhcCCCEEEEEecCC
Confidence            887632     11    156778899999999998877543

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.41  Score=43.31  Aligned_cols=143  Identities=15%  Similarity=0.178  Sum_probs=80.4

Q ss_pred             CeEEEECCccChHHHHHhhcCc--EEEEeccCCCHHhHHHHHHc-CCCceeecccCCCCC---CCCccceEEecC---cC
Q 037675          266 RIGFDIGGGSGTFAARMAERNV--TVITNTLNVDAPYSEFIAAR-GLFPLYLSLDHRFPF---YDNVFDLVHASS---GL  336 (418)
Q Consensus       266 r~VLDvGCGtG~faa~La~~gV--~vv~~alD~s~~~l~~a~eR-Gli~~~~~~~e~LPf---~d~sFDlV~s~~---~L  336 (418)
                      .+|+|+=||.|++...|...|+  .++ .++|+++...+.-... +-...+.+++..+..   +...+|+++.+-   -|
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~-~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~f   81 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVV-AAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF   81 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEE-EEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEE-EEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeecccccc
Confidence            3799999999999988877675  444 5689888777654443 223455555555532   223589998852   23


Q ss_pred             cCCCC----hhHHHHHHHHhhccc-----cCCcEEEEEecc-cCchhHHHHHHHHHHHcCcEEEEEEEcccCC----CCc
Q 037675          337 DVGGQ----PEKLEFLMFDFDRIL-----RAGGLFWLDNFY-CANDEKKSALTRLIERFGYKKLKWVVGEKGE----TGK  402 (418)
Q Consensus       337 ~~~~~----~~~le~~L~Ei~RVL-----RPGG~~ii~~~~-~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d----~~~  402 (418)
                      .....    .+....++.++.|++     ||- +|++.... .......+.+...++.+||. +.|.+..-.+    ..|
T Consensus        82 S~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk-~~i~ENV~~l~~~~~~~~i~~~l~~~GY~-v~~~vlna~dyGvPQ~R  159 (343)
T d1g55a_          82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILLENVKGFEVSSTRDLLIQTIENCGFQ-YQEFLLSPTSLGIPNSR  159 (343)
T ss_dssp             --------------CHHHHHHHHGGGCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHTTEE-EEEEEECGGGGTCSCCC
T ss_pred             cccccccccccccccccchhhhhHhhhcCCCc-eeeeeccCCcccchhhHHHHhhhhccccc-cceeeeeccccCCcccc
Confidence            32111    011123455555554     575 45565432 11222345678888999996 5666654333    245


Q ss_pred             cceEEEEEE
Q 037675          403 SEVYLSAVL  411 (418)
Q Consensus       403 ~e~~l~Ai~  411 (418)
                      ..+|+.++.
T Consensus       160 ~Rvfivg~r  168 (343)
T d1g55a_         160 LRYFLIAKL  168 (343)
T ss_dssp             CEEEEEEEE
T ss_pred             eeEEEEEEe
Confidence            566666553

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=93.93  E-value=0.062  Score=52.00  Aligned_cols=100  Identities=12%  Similarity=0.105  Sum_probs=59.9

Q ss_pred             CCeEEEECCccChHHHHHhhc----C-----------cEEEEeccCCCHHhHHHHHH----cCC----CceeecccCCCC
Q 037675          265 IRIGFDIGGGSGTFAARMAER----N-----------VTVITNTLNVDAPYSEFIAA----RGL----FPLYLSLDHRFP  321 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~----g-----------V~vv~~alD~s~~~l~~a~e----RGl----i~~~~~~~e~LP  321 (418)
                      ..+|+|-.||+|+|...+.++    +           ..+  .+.|.++.+...+.-    +|.    .....++... .
T Consensus       163 ~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l--~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~-~  239 (425)
T d2okca1         163 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKAL--HGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE-K  239 (425)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTE--EEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTT-S
T ss_pred             cceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhh--hhhhccHHHHHHHHhhhhhcCCccccceeecCchhh-h
Confidence            458999999999998666543    1           112  246888776665543    343    1233333222 2


Q ss_pred             CCCCccceEEecCcC--cCCCC------------hhHHHHHHHHhhccccCCcEEEEEec
Q 037675          322 FYDNVFDLVHASSGL--DVGGQ------------PEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       322 f~d~sFDlV~s~~~L--~~~~~------------~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .+...||+|+++==+  ..+..            ...--.++..+...|||||.+.+..+
T Consensus       240 ~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p  299 (425)
T d2okca1         240 EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  299 (425)
T ss_dssp             CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence            346789999996222  21110            01112588899999999998866554

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.046  Score=46.01  Aligned_cols=94  Identities=12%  Similarity=0.153  Sum_probs=62.7

Q ss_pred             ccCCCCCCeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC------CCCCCccce
Q 037675          259 ALGSGGIRIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF------PFYDNVFDL  329 (418)
Q Consensus       259 ~l~~g~~r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L------Pf~d~sFDl  329 (418)
                      .+.+|+  +||-+|+  |.|..+..+++. |..++.  .+.+++..+.+++.|...++....+++      -...+.||+
T Consensus        25 ~~~~g~--~VlV~Ga~G~vG~~aiq~a~~~G~~vi~--~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~  100 (174)
T d1yb5a2          25 CVKAGE--SVLVHGASGGVGLAACQIARAYGLKILG--TAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDI  100 (174)
T ss_dssp             CCCTTC--EEEEETCSSHHHHHHHHHHHHTTCEEEE--EESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEE
T ss_pred             CCCCCC--EEEEEeccccccccccccccccCccccc--ccccccccccccccCcccccccccccHHHHhhhhhccCCceE
Confidence            455664  8999997  567778777765 777653  345777788899988744432111111      134567999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      |+...        .  ...+.+..++|||||.++...
T Consensus       101 v~d~~--------g--~~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2         101 IIEML--------A--NVNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             EEESC--------H--HHHHHHHHHHEEEEEEEEECC
T ss_pred             Eeecc--------c--HHHHHHHHhccCCCCEEEEEe
Confidence            98632        1  156778889999999997753

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=93.87  E-value=0.9  Score=40.45  Aligned_cols=142  Identities=10%  Similarity=0.065  Sum_probs=82.2

Q ss_pred             eEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCC-CCccceEEecC---cCc-----
Q 037675          267 IGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFY-DNVFDLVHASS---GLD-----  337 (418)
Q Consensus       267 ~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~-d~sFDlV~s~~---~L~-----  337 (418)
                      +|||+=||.|++...|...|+.++ .++|+++...+.-+..--...+.++...+... -...|+++.+-   -|.     
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~-~a~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS~ag~~   80 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRII-CANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPCQSWSEGGSL   80 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEE-EEEECCHHHHHHHHHHCCSEEEESCTTTSCGGGSCCCSEEEECCCCTTTSSSSCC
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEE-EEEeCCHHHHHHHHHHCCCCCccCChhhCCHhHcccccEEeeccccccccccccc
Confidence            799999999999999988898877 67899987776544432223345566555332 23589999852   222     


Q ss_pred             -CCCChh-HHHHHHHHhhccccCCcEEEEEec-cc---CchhHHHHHHHHHHHcCcEEEEEEEcccCC---C-CccceEE
Q 037675          338 -VGGQPE-KLEFLMFDFDRILRAGGLFWLDNF-YC---ANDEKKSALTRLIERFGYKKLKWVVGEKGE---T-GKSEVYL  407 (418)
Q Consensus       338 -~~~~~~-~le~~L~Ei~RVLRPGG~~ii~~~-~~---~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d---~-~~~e~~l  407 (418)
                       ...+.. .+-.-+.++-..+||.- |++... ..   .....-+.+...++.+||+ +.|.+..-.+   + .|..+|+
T Consensus        81 ~g~~d~r~~l~~~~~~~i~~~~Pk~-~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~-v~~~vlna~~~GvPQ~R~R~fi  158 (324)
T d1dcta_          81 RGIDDPRGKLFYEYIRILKQKKPIF-FLAENVKGMMAQRHNKAVQEFIQEFDNAGYD-VHIILLNANDYGVAQDRKRVFY  158 (324)
T ss_dssp             CCSSSHHHHHHHHHHHHHHHHCCSE-EEEEEEGGGGSGGGHHHHHHHHHHHHHHHEE-EEEEEEEGGGGTCSBCCEEEEE
T ss_pred             ccccccccchHHHHHHHHHhhCCce-eeccccccccccccchhhHHHHhHHhhCCCc-cceeeeecccccCchhhceeeE
Confidence             112222 22233445666678964 445543 11   1122223355566778996 5566544333   2 3455555


Q ss_pred             EEEE
Q 037675          408 SAVL  411 (418)
Q Consensus       408 ~Ai~  411 (418)
                      .++-
T Consensus       159 v~~r  162 (324)
T d1dcta_         159 IGFR  162 (324)
T ss_dssp             EEEE
T ss_pred             eeec
Confidence            5553

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=93.65  E-value=0.67  Score=41.87  Aligned_cols=142  Identities=11%  Similarity=0.038  Sum_probs=84.5

Q ss_pred             CCeEEEECCccChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCC-CCccceEEecC---cCcC--
Q 037675          265 IRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFY-DNVFDLVHASS---GLDV--  338 (418)
Q Consensus       265 ~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~-d~sFDlV~s~~---~L~~--  338 (418)
                      .-+|||+=||.|++...|.+.|+.++ .++|.++..++.-+.+.. ...+++...+... -..+|+++.+-   -|+.  
T Consensus        11 ~lrv~~lFsG~Gg~~~gl~~aG~~~v-~a~e~d~~a~~~~~~N~~-~~~~~Di~~~~~~~~~~~Dll~ggpPCq~fS~ag   88 (327)
T d2c7pa1          11 GLRFIDLFAGLGGFRLALESCGAECV-YSNEWDKYAQEVYEMNFG-EKPEGDITQVNEKTIPDHDILCAGFPCQAFSISG   88 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEE-EEECCCHHHHHHHHHHHS-CCCBSCGGGSCGGGSCCCSEEEEECCCTTTCTTS
T ss_pred             CCeEEEECccccHHHHHHHHCCCeEE-EEEeCCHHHHHHHHHHCC-CCCcCchhcCchhhcceeeeeecccccchhhhhh
Confidence            35899999999999999998998876 578999877765444321 2233444444321 23589998852   2221  


Q ss_pred             -----CCChhHHHHHHHHhhccccCCcEEEEEecc----cCchhHHHHHHHHHHHcCcEEEEEEEcccCC---C-Cccce
Q 037675          339 -----GGQPEKLEFLMFDFDRILRAGGLFWLDNFY----CANDEKKSALTRLIERFGYKKLKWVVGEKGE---T-GKSEV  405 (418)
Q Consensus       339 -----~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~----~~~ee~~~~~~~l~~~~Gfk~l~W~~~~k~d---~-~~~e~  405 (418)
                           .++...+-..+.++-+.+||. +|++....    ......-+.+...++.+||+. .|.+..-.+   + .|..+
T Consensus        89 ~~~g~~d~r~~l~~~~~~~i~~~kP~-~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~-~~~vl~a~~~GvPQ~R~R~  166 (327)
T d2c7pa1          89 KQKGFEDSRGTLFFDIARIVREKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYSF-HAKVLNALDYGIPQKRERI  166 (327)
T ss_dssp             CCCGGGSTTSCHHHHHHHHHHHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCC-EEEEEEGGGGTCSBCCEEE
T ss_pred             hhcCCcccchhHHHHHHHHHhccCCc-EEecccchhhhhhccchhhHHhhhHHHhcCCcc-eeeEecHHHcCCCchhhhh
Confidence                 112222334455666668896 45555431    112233355777889999964 455544333   2 34455


Q ss_pred             EEEEE
Q 037675          406 YLSAV  410 (418)
Q Consensus       406 ~l~Ai  410 (418)
                      |+.++
T Consensus       167 fivg~  171 (327)
T d2c7pa1         167 YMICF  171 (327)
T ss_dssp             EEEEE
T ss_pred             eeeee
Confidence            66654

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=93.04  E-value=0.078  Score=50.89  Aligned_cols=46  Identities=22%  Similarity=0.225  Sum_probs=34.7

Q ss_pred             CCCCccceEEecCcCcCCCC------------------------------hhHHHHHHHHhhccccCCcEEEEEec
Q 037675          322 FYDNVFDLVHASSGLDVGGQ------------------------------PEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       322 f~d~sFDlV~s~~~L~~~~~------------------------------~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ||++|.|++|++.++||...                              ..++..+|.-=.+-|+|||.+++.-+
T Consensus       135 fP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~  210 (359)
T d1m6ex_         135 FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred             CCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence            89999999999999998532                              11444556666667889999988654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.59  E-value=0.21  Score=42.34  Aligned_cols=98  Identities=12%  Similarity=-0.017  Sum_probs=65.2

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCC-C------CCCCCccce
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHR-F------PFYDNVFDL  329 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~-L------Pf~d~sFDl  329 (418)
                      .+++|+  +||=+|||. |.++..+++. |...+ ++.|.++.-++.+++-|....+.....+ .      -+..+-+|+
T Consensus        25 ~v~~G~--~VlV~G~G~iGl~a~~~ak~~Ga~~V-i~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~  101 (174)
T d1e3ia2          25 KVTPGS--TCAVFGLGCVGLSAIIGCKIAGASRI-IAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDY  101 (174)
T ss_dssp             CCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEE-EEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred             CCCCCC--EEEEECCChHHHHHHHHHHHhCCcee-eeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcE
Confidence            356664  899999998 7777777765 65332 2469999999999999874444321111 1      122456888


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCC-cEEEEEecc
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAG-GLFWLDNFY  368 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPG-G~~ii~~~~  368 (418)
                      |+-.-     ..    +..+.+..+.|||| |.+++....
T Consensus       102 vie~~-----G~----~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2         102 SLDCA-----GT----AQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             EEESS-----CC----HHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             EEEec-----cc----chHHHHHHHHhhcCCeEEEecCCC
Confidence            87422     22    26778999999997 999887653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.31  E-value=0.17  Score=42.30  Aligned_cols=96  Identities=13%  Similarity=0.073  Sum_probs=61.3

Q ss_pred             cCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC-----CCCCccceEEe
Q 037675          260 LGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP-----FYDNVFDLVHA  332 (418)
Q Consensus       260 l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP-----f~d~sFDlV~s  332 (418)
                      +++|+  +||=+|+|. |.++..+++. |...+ ++.|.++..++.+++-|....+....+...     ...+.+|+|+-
T Consensus        30 ~~~g~--~vli~GaG~vG~~~~~~a~~~g~~~v-v~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid  106 (172)
T d1h2ba2          30 LYPGA--YVAIVGVGGLGHIAVQLLKVMTPATV-IALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMD  106 (172)
T ss_dssp             CCTTC--EEEEECCSHHHHHHHHHHHHHCCCEE-EEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             cCCCC--EEEEeCCChHHHHHHHHHHhhcCccc-ccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEE
Confidence            55664  799999987 4555666653 54332 346888888999998886444332111110     12345888875


Q ss_pred             cCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          333 SSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       333 ~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      ..     ..    ...+....+.|||||.+++...
T Consensus       107 ~~-----g~----~~~~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         107 FV-----GS----QATVDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             SS-----CC----HHHHHHGGGGEEEEEEEEECCC
T ss_pred             ec-----Cc----chHHHHHHHHHhCCCEEEEEeC
Confidence            32     11    1567789999999999988664

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.84  E-value=0.17  Score=41.77  Aligned_cols=96  Identities=15%  Similarity=0.063  Sum_probs=60.7

Q ss_pred             HccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC-----CCCCCccceE
Q 037675          258 LALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF-----PFYDNVFDLV  330 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L-----Pf~d~sFDlV  330 (418)
                      ..+++|+  +||=+|+|. |..+..+++. |..++  ++|.++..++.+++-|....+....+..     ....+.+|.|
T Consensus        23 ~~~~~g~--~VlV~GaG~vG~~~~~~ak~~G~~Vi--~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i   98 (166)
T d1llua2          23 TNARPGQ--WVAISGIGGLGHVAVQYARAMGLHVA--AIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVL   98 (166)
T ss_dssp             HTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEE--EEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred             hCCCCCC--EEEEeeccccHHHHHHHHHHcCCccc--eecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccc
Confidence            3566664  788899986 5666666664 77665  4688999999999988643332211111     1112334444


Q ss_pred             EecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          331 HASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       331 ~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .+..      ..    ..+....+.|||||++++...
T Consensus        99 ~~~~------~~----~~~~~~~~~l~~~G~iv~~G~  125 (166)
T d1llua2          99 VTAV------SN----SAFGQAIGMARRGGTIALVGL  125 (166)
T ss_dssp             ECCS------CH----HHHHHHHTTEEEEEEEEECCC
T ss_pred             cccc------cc----hHHHHHHHHhcCCcEEEEEEe
Confidence            4322      11    456788899999999987654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.83  E-value=0.16  Score=42.15  Aligned_cols=97  Identities=16%  Similarity=0.135  Sum_probs=61.6

Q ss_pred             ccCCCCCCeEEEECC-c-cChHHHHHhh-cCc-EEEEeccCCCHHhHHHHHHcCCCceeecccCCC------CCCCCccc
Q 037675          259 ALGSGGIRIGFDIGG-G-SGTFAARMAE-RNV-TVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF------PFYDNVFD  328 (418)
Q Consensus       259 ~l~~g~~r~VLDvGC-G-tG~faa~La~-~gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L------Pf~d~sFD  328 (418)
                      .+++|  .+||=+|| | .|..+..+++ .|. .+  ++.|.++.-++++++-|....+....++.      -...+.||
T Consensus        24 ~~~~g--~~vlV~G~~G~vG~~~~~~~~~~g~~~V--~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d   99 (170)
T d1jvba2          24 SLDPT--KTLLVVGAGGGLGTMAVQIAKAVSGATI--IGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVD   99 (170)
T ss_dssp             TCCTT--CEEEEETTTSHHHHHHHHHHHHHTCCEE--EEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCC--CEEEEEeccccceeeeeecccccccccc--cccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccch
Confidence            45555  48999997 3 5666665555 464 44  34688888899999888632222111111      02345699


Q ss_pred             eEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEecc
Q 037675          329 LVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNFY  368 (418)
Q Consensus       329 lV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~~  368 (418)
                      +|+...     ..    +..+....+.|||||.+++...+
T Consensus       100 ~vid~~-----g~----~~~~~~a~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2         100 AVIDLN-----NS----EKTLSVYPKALAKQGKYVMVGLF  130 (170)
T ss_dssp             EEEESC-----CC----HHHHTTGGGGEEEEEEEEECCSS
T ss_pred             hhhccc-----cc----chHHHhhhhhcccCCEEEEeccc
Confidence            888632     11    15667889999999999887654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=91.63  E-value=0.7  Score=37.85  Aligned_cols=84  Identities=11%  Similarity=-0.009  Sum_probs=61.5

Q ss_pred             eEEEECCcc--ChHHHHHhhcCcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCChhH
Q 037675          267 IGFDIGGGS--GTFAARMAERNVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQPEK  344 (418)
Q Consensus       267 ~VLDvGCGt--G~faa~La~~gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~~~  344 (418)
                      +|.=||+|.  +.+|..|.+.|..+.  +.|.+++.++.+++.|.+.......+.+    ...|+|+..-      +...
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~--~~d~~~~~~~~a~~~~~~~~~~~~~~~~----~~~DiIilav------p~~~   69 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLI--GVSRQQSTCEKAVERQLVDEAGQDLSLL----QTAKIIFLCT------PIQL   69 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEE--EECSCHHHHHHHHHTTSCSEEESCGGGG----TTCSEEEECS------CHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEE--EEECCchHHHHHHHhhccceeeeecccc----cccccccccC------cHhh
Confidence            466678885  457888888898876  3688888899999998755544444333    4578887522      3456


Q ss_pred             HHHHHHHhhccccCCcEE
Q 037675          345 LEFLMFDFDRILRAGGLF  362 (418)
Q Consensus       345 le~~L~Ei~RVLRPGG~~  362 (418)
                      .+.++.++...|+|+-++
T Consensus        70 ~~~vl~~l~~~l~~~~iv   87 (165)
T d2f1ka2          70 ILPTLEKLIPHLSPTAIV   87 (165)
T ss_dssp             HHHHHHHHGGGSCTTCEE
T ss_pred             hhhhhhhhhhhcccccce
Confidence            779999999999998865

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=91.31  E-value=0.16  Score=50.55  Aligned_cols=110  Identities=14%  Similarity=0.028  Sum_probs=60.4

Q ss_pred             HHHHHccCCCCCCeEEEECCccChHHHHHhhc----C----------------cEEEEeccCCCHHhHHHHHH----cCC
Q 037675          254 IDDVLALGSGGIRIGFDIGGGSGTFAARMAER----N----------------VTVITNTLNVDAPYSEFIAA----RGL  309 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~----g----------------V~vv~~alD~s~~~l~~a~e----RGl  309 (418)
                      |-+++....+  .+|+|-.||+|+|.....++    .                ...  .+.|.++.+...+.-    +|.
T Consensus       156 mv~ll~~~~~--~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~--~G~E~~~~~~~la~~nl~l~~~  231 (524)
T d2ar0a1         156 IIHLLKPQPR--EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF--IGLELVPGTRRLALMNCLLHDI  231 (524)
T ss_dssp             HHHHHCCCTT--CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSE--EEEESCHHHHHHHHHHHHTTTC
T ss_pred             hhhcccCccc--hhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhh--hhhccCHHHHHHHHHHHHhhcc
Confidence            3344443333  58999999999997554432    1                012  246787777765543    232


Q ss_pred             C-ceeecccCC----C---CCCCCccceEEecCcC--cCCCC---------hhHHHHHHHHhhccccCCcEEEEEec
Q 037675          310 F-PLYLSLDHR----F---PFYDNVFDLVHASSGL--DVGGQ---------PEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       310 i-~~~~~~~e~----L---Pf~d~sFDlV~s~~~L--~~~~~---------~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      . .....+...    +   ......||+|+++==+  ..+..         ...--.++..+.+.|||||++.+..+
T Consensus       232 ~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP  308 (524)
T d2ar0a1         232 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP  308 (524)
T ss_dssp             CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence            1 111111111    1   1234679999996211  11110         01111478889999999999866554

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.11  E-value=0.24  Score=43.66  Aligned_cols=73  Identities=10%  Similarity=0.029  Sum_probs=47.0

Q ss_pred             CCCCccceEEecC----cCcCCCC----hhHHHHHHHHhhccccCCcEEEEEecccC-----chhHHHHHHHHHHHcCcE
Q 037675          322 FYDNVFDLVHASS----GLDVGGQ----PEKLEFLMFDFDRILRAGGLFWLDNFYCA-----NDEKKSALTRLIERFGYK  388 (418)
Q Consensus       322 f~d~sFDlV~s~~----~L~~~~~----~~~le~~L~Ei~RVLRPGG~~ii~~~~~~-----~ee~~~~~~~l~~~~Gfk  388 (418)
                      ++++|+|+|+++=    .+..|..    .+.+...+.|+.|+|||||.+++......     .......+..+.+..||.
T Consensus        19 l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (279)
T d1eg2a_          19 LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKML   98 (279)
T ss_dssp             SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHHHHHHHHHHCCCE
T ss_pred             CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchhhHHHHHHhccCce
Confidence            5689999999961    2222221    13356888999999999999977543111     122234466778888988


Q ss_pred             EEEEEE
Q 037675          389 KLKWVV  394 (418)
Q Consensus       389 ~l~W~~  394 (418)
                      ...|..
T Consensus        99 ~~~~i~  104 (279)
T d1eg2a_          99 LANLII  104 (279)
T ss_dssp             EEEEEE
T ss_pred             eeeeee
Confidence            765444

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.60  E-value=0.27  Score=40.33  Aligned_cols=95  Identities=16%  Similarity=0.089  Sum_probs=59.4

Q ss_pred             ccCCCCCCeEEEECCccC-hHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC----C-CCCCccceEE
Q 037675          259 ALGSGGIRIGFDIGGGSG-TFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF----P-FYDNVFDLVH  331 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG-~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L----P-f~d~sFDlV~  331 (418)
                      .+.+|+  +||=.|+|.- ..+..+++. |..++  +.+.++.-++++++-|...++....+.+    . ..++.+|.|.
T Consensus        24 ~~~~g~--~vlv~G~G~iG~~a~~~a~~~g~~v~--~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~   99 (168)
T d1rjwa2          24 GAKPGE--WVAIYGIGGLGHVAVQYAKAMGLNVV--AVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVV   99 (168)
T ss_dssp             TCCTTC--EEEEECCSTTHHHHHHHHHHTTCEEE--EECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEE
T ss_pred             CCCCCC--EEEEeecccchhhhhHHHhcCCCeEe--ccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEe
Confidence            466664  7888999874 455555554 66654  4688898899999988733332211111    1 1234455554


Q ss_pred             ecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          332 ASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       332 s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      +..      . .   ..+....+.|||||.+++...
T Consensus       100 ~~~------~-~---~~~~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2         100 TAV------S-K---PAFQSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             SSC------C-H---HHHHHHHHHEEEEEEEEECCC
T ss_pred             ecC------C-H---HHHHHHHHHhccCCceEeccc
Confidence            321      1 1   567799999999999987654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.55  E-value=0.55  Score=38.58  Aligned_cols=86  Identities=15%  Similarity=0.106  Sum_probs=60.8

Q ss_pred             eEEEECCcc--ChHHHHHhhcC--cEEEEeccCCCHHhHHHHHHcCCCceeecccCCCCCCCCccceEEecCcCcCCCCh
Q 037675          267 IGFDIGGGS--GTFAARMAERN--VTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFPFYDNVFDLVHASSGLDVGGQP  342 (418)
Q Consensus       267 ~VLDvGCGt--G~faa~La~~g--V~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LPf~d~sFDlV~s~~~L~~~~~~  342 (418)
                      +|+=||||.  |++|..|.+.|  +.+.  +.|.++..++.+++.|.+.........  ..+...|+|+..-      ++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~--~~D~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~dlIila~------p~   72 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIY--GYDINPESISKAVDLGIIDEGTTSIAK--VEDFSPDFVMLSS------PV   72 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEE--EECSCHHHHHHHHHTTSCSEEESCGGG--GGGTCCSEEEECS------CH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEE--EEECChHHHHHHHHhhcchhhhhhhhh--hhccccccccccC------Cc
Confidence            577799997  45788888876  4553  579999999999999875444432221  2344678888532      34


Q ss_pred             hHHHHHHHHhhccccCCcEE
Q 037675          343 EKLEFLMFDFDRILRAGGLF  362 (418)
Q Consensus       343 ~~le~~L~Ei~RVLRPGG~~  362 (418)
                      .....++.++...++++-.+
T Consensus        73 ~~~~~vl~~l~~~~~~~~ii   92 (171)
T d2g5ca2          73 RTFREIAKKLSYILSEDATV   92 (171)
T ss_dssp             HHHHHHHHHHHHHSCTTCEE
T ss_pred             hhhhhhhhhhhccccccccc
Confidence            55678999999999988744

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=89.39  E-value=0.28  Score=42.61  Aligned_cols=79  Identities=9%  Similarity=-0.019  Sum_probs=46.7

Q ss_pred             eeecccCC-C-CCCCCccceEEec--CcC--cC---CCChh----HHHHHHHHhhccccCCcEEEEEecccCchhHHHHH
Q 037675          312 LYLSLDHR-F-PFYDNVFDLVHAS--SGL--DV---GGQPE----KLEFLMFDFDRILRAGGLFWLDNFYCANDEKKSAL  378 (418)
Q Consensus       312 ~~~~~~e~-L-Pf~d~sFDlV~s~--~~L--~~---~~~~~----~le~~L~Ei~RVLRPGG~~ii~~~~~~~ee~~~~~  378 (418)
                      ++++++.. | -++++++|+|+++  .-.  ..   +.+..    -+...+.|+.|+|||||.+++...    +.....+
T Consensus         7 i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~----~~~~~~~   82 (256)
T d1g60a_           7 IHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT----PFNCAFI   82 (256)
T ss_dssp             EEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC----HHHHHHH
T ss_pred             EEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccC----chhhhhh
Confidence            45555433 1 2568999999996  111  11   11111    245688899999999998865322    1222335


Q ss_pred             HHHHHHcCcEEEEEEE
Q 037675          379 TRLIERFGYKKLKWVV  394 (418)
Q Consensus       379 ~~l~~~~Gfk~l~W~~  394 (418)
                      ...+...||....+.+
T Consensus        83 ~~~~~~~g~~~~~~ii   98 (256)
T d1g60a_          83 CQYLVSKGMIFQNWIT   98 (256)
T ss_dssp             HHHHHHTTCEEEEEEE
T ss_pred             hhhhhcccceeeeeeE
Confidence            5667788898655433

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.11  E-value=0.34  Score=40.30  Aligned_cols=94  Identities=20%  Similarity=0.085  Sum_probs=59.8

Q ss_pred             ccCCCCCCeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC------CCCCCccce
Q 037675          259 ALGSGGIRIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF------PFYDNVFDL  329 (418)
Q Consensus       259 ~l~~g~~r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L------Pf~d~sFDl  329 (418)
                      .+++|+  +||=.|.  |+|.++..+++. |..++.  ..-+++..+.+++.|....+....+.+      -+..+.||+
T Consensus        22 ~~~~g~--~VlI~ga~g~vG~~~iqla~~~g~~vi~--~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~   97 (183)
T d1pqwa_          22 RLSPGE--RVLIHSATGGVGMAAVSIAKMIGARIYT--TAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDV   97 (183)
T ss_dssp             CCCTTC--EEEETTTTSHHHHHHHHHHHHHTCEEEE--EESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEE
T ss_pred             CCCCCC--EEEEECCCCCcccccchhhcccccccee--eecccccccccccccccccccCCccCHHHHHHHHhCCCCEEE
Confidence            455564  7887773  457788888875 777653  234566778888888633322111111      023567999


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      |+....     .     ..+.+..++|||+|.++...
T Consensus        98 v~d~~g-----~-----~~~~~~~~~l~~~G~~v~~G  124 (183)
T d1pqwa_          98 VLNSLA-----G-----EAIQRGVQILAPGGRFIELG  124 (183)
T ss_dssp             EEECCC-----T-----HHHHHHHHTEEEEEEEEECS
T ss_pred             EEeccc-----c-----hHHHHHHHHhcCCCEEEEEc
Confidence            997432     1     45668889999999997753

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=89.11  E-value=0.19  Score=41.78  Aligned_cols=97  Identities=20%  Similarity=0.228  Sum_probs=61.0

Q ss_pred             HccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCC-CCCCCCccceEEecC
Q 037675          258 LALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHR-FPFYDNVFDLVHASS  334 (418)
Q Consensus       258 L~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~-LPf~d~sFDlV~s~~  334 (418)
                      ..+++|+  +||=+|+|. |.++..+++. |..++  ++|.+++..+.+++-|...++....+. .....+.||.|+-.-
T Consensus        26 ~~~~~G~--~VlI~GaG~vG~~a~qlak~~Ga~~i--~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~  101 (168)
T d1uufa2          26 WQAGPGK--KVGVVGIGGLGHMGIKLAHAMGAHVV--AFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTV  101 (168)
T ss_dssp             TTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEE--EEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECC
T ss_pred             hCCCCCC--EEEEeccchHHHHHHHHhhcccccch--hhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeee
Confidence            3567774  788899975 7777777764 77665  256666677888888863333211111 111235799887532


Q ss_pred             cCcCCCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          335 GLDVGGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       335 ~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                      .-     .    ..+....+.|+|||.+++...
T Consensus       102 g~-----~----~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         102 AA-----P----HNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             SS-----C----CCHHHHHTTEEEEEEEEECCC
T ss_pred             ec-----c----hhHHHHHHHHhcCCEEEEecc
Confidence            11     1    234477789999999977653

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.82  E-value=0.67  Score=39.12  Aligned_cols=102  Identities=9%  Similarity=0.036  Sum_probs=61.7

Q ss_pred             HHHHHccCCCCCCeEEEEC--CccChHHHHHhhc-CcEEEEeccCCC-HHhHHHHHHcCCCceeecccCCCC-----CCC
Q 037675          254 IDDVLALGSGGIRIGFDIG--GGSGTFAARMAER-NVTVITNTLNVD-APYSEFIAARGLFPLYLSLDHRFP-----FYD  324 (418)
Q Consensus       254 I~~lL~l~~g~~r~VLDvG--CGtG~faa~La~~-gV~vv~~alD~s-~~~l~~a~eRGli~~~~~~~e~LP-----f~d  324 (418)
                      +.++.++++|...+||=.|  .|+|.++..+++. |..++ ++...+ +...+.+.+-|...++....+.+.     ..+
T Consensus        20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~v-i~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~   98 (187)
T d1vj1a2          20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRV-VGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACP   98 (187)
T ss_dssp             HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEE-EEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCT
T ss_pred             HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcce-ecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhc
Confidence            3344456777556899877  4779999999985 76543 223344 444555666676333322111111     123


Q ss_pred             CccceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          325 NVFDLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       325 ~sFDlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      +.+|+|+-.-     .     ...+....++|||||+++...
T Consensus        99 ~GvDvv~D~v-----G-----g~~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2          99 GGVDVYFDNV-----G-----GDISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             TCEEEEEESS-----C-----HHHHHHHHTTEEEEEEEEEC-
T ss_pred             cCceEEEecC-----C-----chhHHHHhhhccccccEEEec
Confidence            5699997422     1     156779999999999997654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=86.90  E-value=1.5  Score=36.61  Aligned_cols=97  Identities=11%  Similarity=-0.050  Sum_probs=59.0

Q ss_pred             ccCCCCCCeEEEECCccC-hHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC-------CCCCCccce
Q 037675          259 ALGSGGIRIGFDIGGGSG-TFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF-------PFYDNVFDL  329 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGtG-~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L-------Pf~d~sFDl  329 (418)
                      .+++|+  +||=+|||.. .++..+++. |...+ +++|.++.-++.+++-|....+....++.       -..++-+|.
T Consensus        24 ~~~~G~--~VlV~GaGgvGl~a~~~ak~~G~~~V-i~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~  100 (174)
T d1p0fa2          24 KVTPGS--TCAVFGLGGVGFSAIVGCKAAGASRI-IGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDY  100 (174)
T ss_dssp             CCCTTC--EEEEECCSHHHHHHHHHHHHHTCSEE-EEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CCCCCC--EEEEECCCchhHHHHHHHHHcCCcee-eccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcE
Confidence            356664  8999999874 455555553 65333 35799999999999998755543211111       122346888


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccC-CcEEEEEec
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRA-GGLFWLDNF  367 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRP-GG~~ii~~~  367 (418)
                      |+-.-     ...    ..+.+..+.+++ +|.+++...
T Consensus       101 vid~~-----g~~----~~~~~~~~~~~~~~G~~v~vG~  130 (174)
T d1p0fa2         101 AVECA-----GRI----ETMMNALQSTYCGSGVTVVLGL  130 (174)
T ss_dssp             EEECS-----CCH----HHHHHHHHTBCTTTCEEEECCC
T ss_pred             EEEcC-----CCc----hHHHHHHHHHHHhcCceEEEEE
Confidence            77532     111    455566666654 698877664

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=86.52  E-value=0.58  Score=38.72  Aligned_cols=94  Identities=13%  Similarity=-0.021  Sum_probs=62.1

Q ss_pred             ccCCCCCCeEEEECCc--cChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCCC------CCCCccce
Q 037675          259 ALGSGGIRIGFDIGGG--SGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP------FYDNVFDL  329 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCG--tG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP------f~d~sFDl  329 (418)
                      .+++|+  +||=.|+|  .|.++..+++. |..++  +.+.+++-.+.+++.|....+....+++.      ...+.+|+
T Consensus        25 ~l~~g~--~Vlv~ga~g~vG~~~iqlak~~Ga~Vi--~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~  100 (179)
T d1qora2          25 EIKPDE--QFLFHAAAGGVGLIACQWAKALGAKLI--GTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRV  100 (179)
T ss_dssp             CCCTTC--EEEESSTTBHHHHHHHHHHHHHTCEEE--EEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCCCC--EEEEEccccccchHHHHHHHHhCCeEe--ecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEE
Confidence            456664  88888655  57788888876 77765  46888888899999886333321111110      23567898


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      |+....-          ..+.+..+.|+|+|.+++..
T Consensus       101 v~d~~g~----------~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2         101 VYDSVGR----------DTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             EEECSCG----------GGHHHHHHTEEEEEEEEECC
T ss_pred             EEeCccH----------HHHHHHHHHHhcCCeeeecc
Confidence            8863311          23558888999999886654

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=85.91  E-value=0.98  Score=37.67  Aligned_cols=96  Identities=9%  Similarity=0.056  Sum_probs=63.2

Q ss_pred             HHccCCCCCCeEEEECCc--cChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC------CCCCCcc
Q 037675          257 VLALGSGGIRIGFDIGGG--SGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF------PFYDNVF  327 (418)
Q Consensus       257 lL~l~~g~~r~VLDvGCG--tG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L------Pf~d~sF  327 (418)
                      ..++++|+  +||=.|++  .|..+..|++. |..+++  +.-+++..+.+++.|....+....+..      -...+-+
T Consensus        24 ~~~v~~G~--~VlV~ga~ggvG~~aiqlak~~Ga~vi~--~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gv   99 (182)
T d1v3va2          24 VCGVKGGE--TVLVSAAAGAVGSVVGQIAKLKGCKVVG--AAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGY   99 (182)
T ss_dssp             TTCCCSSC--EEEESSTTSHHHHHHHHHHHHTTCEEEE--EESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCE
T ss_pred             HhCCCCCC--EEEEEeCCCchhHHHHHHHHccCCEEEE--eCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCC
Confidence            33566674  78877764  56777888876 787764  455677888888888744433221111      1234568


Q ss_pred             ceEEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEEe
Q 037675          328 DLVHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLDN  366 (418)
Q Consensus       328 DlV~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~~  366 (418)
                      |+|+-.-     .  .   ..+.+..+.|||||.+++..
T Consensus       100 d~v~D~v-----G--~---~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2         100 DCYFDNV-----G--G---EFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             EEEEESS-----C--H---HHHHHHGGGEEEEEEEEECC
T ss_pred             ceeEEec-----C--c---hhhhhhhhhccCCCeEEeec
Confidence            9888522     1  1   56789999999999997754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=84.21  E-value=1.9  Score=35.99  Aligned_cols=95  Identities=16%  Similarity=0.092  Sum_probs=57.7

Q ss_pred             cCCCCCCeEEEECCcc-ChHHHHHhhc-Cc-EEEEeccCCCHHhHHHHHHcCCCceeecccCCCC-------CCCCccce
Q 037675          260 LGSGGIRIGFDIGGGS-GTFAARMAER-NV-TVITNTLNVDAPYSEFIAARGLFPLYLSLDHRFP-------FYDNVFDL  329 (418)
Q Consensus       260 l~~g~~r~VLDvGCGt-G~faa~La~~-gV-~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~LP-------f~d~sFDl  329 (418)
                      +++|+  +|+=+|||. |.++..+++. |. .++  ++|.+++-++.|++.|....+........       ...+-+|.
T Consensus        27 ~~~g~--tVlI~G~GgvGl~ai~~ak~~G~~~Vi--~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~  102 (176)
T d1d1ta2          27 VKPGS--TCVVFGLGGVGLSVIMGCKSAGASRII--GIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGY  102 (176)
T ss_dssp             CCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEE--EECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCE
T ss_pred             CCCCC--EEEEECCCchhHHHHHHHHHcCCceEE--EecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceE
Confidence            56664  899999986 4455555544 63 443  57999999999999998444432111111       23456887


Q ss_pred             EEecCcCcCCCChhHHHHHHHH-hhccccCCcEEEEEec
Q 037675          330 VHASSGLDVGGQPEKLEFLMFD-FDRILRAGGLFWLDNF  367 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~E-i~RVLRPGG~~ii~~~  367 (418)
                      |+-..     ...    ..+.+ +..++|++|.+++...
T Consensus       103 vi~~~-----g~~----~~~~~a~~~~~~~~G~~v~vG~  132 (176)
T d1d1ta2         103 TFEVI-----GHL----ETMIDALASCHMNYGTSVVVGV  132 (176)
T ss_dssp             EEECS-----CCH----HHHHHHHTTSCTTTCEEEECSC
T ss_pred             EEEeC-----Cch----HHHHHHHHHhhcCCeEEEEEEc
Confidence            77422     111    33334 4455667698877654

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=83.01  E-value=0.89  Score=41.09  Aligned_cols=87  Identities=13%  Similarity=-0.015  Sum_probs=56.4

Q ss_pred             HHHHHHHHccCCCCCCeEEEECCccChHHHHHhhcCcEEEEeccCCCHH---hHHHHHHc----C--------CCceeec
Q 037675          251 DFLIDDVLALGSGGIRIGFDIGGGSGTFAARMAERNVTVITNTLNVDAP---YSEFIAAR----G--------LFPLYLS  315 (418)
Q Consensus       251 ~~~I~~lL~l~~g~~r~VLDvGCGtG~faa~La~~gV~vv~~alD~s~~---~l~~a~eR----G--------li~~~~~  315 (418)
                      ...|.+.+.++.+...+|||.=||.|..+..|+..|..|+  .++-++.   +++.+.+|    .        -+.++.+
T Consensus        75 ~~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~--~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~  152 (250)
T d2oyra1          75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVR--MLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_dssp             GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEE--EEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred             hhHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEEE--EEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecC
Confidence            4456666677766656899999999999999999987765  3577764   33332222    1        0234444


Q ss_pred             cc-CCCCCCCCccceEEecCcCcCC
Q 037675          316 LD-HRFPFYDNVFDLVHASSGLDVG  339 (418)
Q Consensus       316 ~~-e~LPf~d~sFDlV~s~~~L~~~  339 (418)
                      ++ +-+.-....||+|+..=.|..-
T Consensus       153 Ds~~~L~~~~~~~DvIYlDPMFp~~  177 (250)
T d2oyra1         153 SSLTALTDITPRPQVVYLDPMFPHK  177 (250)
T ss_dssp             CHHHHSTTCSSCCSEEEECCCCCCC
T ss_pred             cHHHHHhccCCCCCEEEECCCCccc
Confidence            33 3344446779999987666543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=82.16  E-value=2  Score=34.97  Aligned_cols=95  Identities=14%  Similarity=0.002  Sum_probs=59.3

Q ss_pred             ccCCCCCCeEEEECCcc-ChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceeecccCCC-------CCCCCccce
Q 037675          259 ALGSGGIRIGFDIGGGS-GTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYLSLDHRF-------PFYDNVFDL  329 (418)
Q Consensus       259 ~l~~g~~r~VLDvGCGt-G~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~~~~e~L-------Pf~d~sFDl  329 (418)
                      .+++|+  +||=+|||- |.++..+++. |...+ ++.|.++.-.+.+++-|....+......-       -...+.+|+
T Consensus        25 ~~~~G~--tVlI~GaGGvG~~aiq~ak~~G~~~v-i~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~  101 (176)
T d2fzwa2          25 KLEPGS--VCAVFGLGGVGLAVIMGCKVAGASRI-IGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDY  101 (176)
T ss_dssp             CCCTTC--EEEEECCSHHHHHHHHHHHHHTCSEE-EEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CCCCCC--EEEEecchhHHHHHHHHHHHHhcCce-EEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcE
Confidence            467775  788888874 4566666664 64333 34688888899999988744433211111       112456898


Q ss_pred             EEecCcCcCCCChhHHHHHHHHhhccccCCcEEEEE
Q 037675          330 VHASSGLDVGGQPEKLEFLMFDFDRILRAGGLFWLD  365 (418)
Q Consensus       330 V~s~~~L~~~~~~~~le~~L~Ei~RVLRPGG~~ii~  365 (418)
                      |+-.-     ...    ..+......+++||.+++.
T Consensus       102 vid~~-----G~~----~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2         102 SFECI-----GNV----KVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             EEECS-----CCH----HHHHHHHHTBCTTTCEEEE
T ss_pred             eeecC-----CCH----HHHHHHHHhhcCCceeEEE
Confidence            88532     111    5677889999999776543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.98  E-value=0.56  Score=39.88  Aligned_cols=90  Identities=17%  Similarity=0.204  Sum_probs=57.0

Q ss_pred             CeEEEECC--ccChHHHHHhhc-CcEEEEeccCCCHHhHHHHHHcCCCceee--c-ccCC-CCCCCCccceEEecCcCcC
Q 037675          266 RIGFDIGG--GSGTFAARMAER-NVTVITNTLNVDAPYSEFIAARGLFPLYL--S-LDHR-FPFYDNVFDLVHASSGLDV  338 (418)
Q Consensus       266 r~VLDvGC--GtG~faa~La~~-gV~vv~~alD~s~~~l~~a~eRGli~~~~--~-~~e~-LPf~d~sFDlV~s~~~L~~  338 (418)
                      .+||=.|+  |+|+++..|++. |..++..  --+++-.+.+++-|....+.  . +.+. ....++.||+|+-.-.-  
T Consensus        33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Viat--~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg--  108 (176)
T d1xa0a2          33 GPVLVTGATGGVGSLAVSMLAKRGYTVEAS--TGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG--  108 (176)
T ss_dssp             CCEEESSTTSHHHHHHHHHHHHTTCCEEEE--ESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTT--
T ss_pred             CEEEEEeccchHHHHHHHHHHHcCCceEEe--cCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCc--
Confidence            47888874  678999999875 7776643  33455667777877633321  1 1111 23346689988853211  


Q ss_pred             CCChhHHHHHHHHhhccccCCcEEEEEec
Q 037675          339 GGQPEKLEFLMFDFDRILRAGGLFWLDNF  367 (418)
Q Consensus       339 ~~~~~~le~~L~Ei~RVLRPGG~~ii~~~  367 (418)
                              ..+.+..++|||||+++....
T Consensus       109 --------~~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2         109 --------RTLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             --------TTHHHHHHTEEEEEEEEECSC
T ss_pred             --------hhHHHHHHHhCCCceEEEeec
Confidence                    346688999999999987665