Citrus Sinensis ID: 037691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MQDSHTLCSTFSHPKLHFPSARHDFPSAHHDFPSLSRPRNLNSHVHFPSLSTKTITPIPSPPIPPKITQTPSISPPPNSPHSEFQEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRLDVCCNSSMPLTKSPLSPIK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHccccccEEcHHHHHHHHHHHHHHcccccHHHHHHccccccccccHHHHHHHHHHHHcccccccHHHccccHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHcccHccccHHHHHHHHHHHHHccccHHHHHHHHHHccHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHcccHHHHcccHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHHHcccHHHHHHccHHHcccHHHHcHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mqdshtlcstfshpklhfpsarhdfpsahhdfpslsrprnlnshvhfpslstktitpipsppippkitqtpsispppnsphsefqEKMLYLDSIGvdffslindhppivsaslndIKSTVDLITSLDFAAAEFRRIVSMCPeiltsrasdilPVFTFLLREAKvngsdlkrvisrrPRLLVSAVKTRLRPTLYFLQSMGIAEVNKHTYLLSCsvedkliprLQYFQKIGFSKREATAMFRRfpqlfnysvkdnyeRKLNYFVVGMGrdlkelkefpqyfsfslenrikprhqacvdkgvcfplnvllktseaqfhrrldvccnssmpltksplspik
Flexible Loop (DISEMBL)
MQDSHTLCSTFSHPKLHFPSARHDFPSAHHDFPSLSRPRNLNSHVHFPSLSTKTITPIPSPPIPPKITQTPSISPPPNSPHSEFQEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREakvngsdlkrvisrrprllvsavktrlrpTLYFLQSMGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQlfnysvkdnyeRKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRLDVCCnssmpltksplspik
Low Complexity Region (SEG)
MQDSHTLCSTFSHPKLHFPSARHDFPSAHHDFPSLSRPRNLNSHVHFpslstktitpipsppippkitqtpsispppnspHSEFQEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRLDVCCNSSMPLTKSPLSPIK
Disordered region (IsUnstruct)
**************************************************************************************KMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRLDVCCN**************
Disordered Region (DISOPRED)
***********SHPKLHFPS*****************************LSTKTITPI********ITQTPSISPP*NSPHSEFQEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRLDVCCNSSMPLTKSPL**I*
Disordered Region (DISEMBL)
********STFSHPKLHFPSARHDFPSAHHDFPSLSRPRNLNSHVHFPSLSTKTITPIPSPPIPPKITQ************SEFQEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRLDVCCNSSMPL*********
Disordered Region (DISPRO)
********************************PSLSRPRNLNSHVHFPSLSTKTITPIPSPPIPPKITQTPSISPPPNSPHSEFQEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRLDVCCNSSMPLTKS******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQDSHTLCSTFSHPKLHFPSARHDFPSAHHDFPSLSRPRNLNSHVHFPSLSTKTITPIPSPPIPPKITQTPSISPPPNSPHSEFQEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRLDVCCNSSMPLTKSPLSPIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
359482045	335	PREDICTED: uncharacterized protein LOC10	0.925	0.931	0.678	1e-116
255578583	354	conserved hypothetical protein [Ricinus	0.875	0.833	0.693	1e-111
224138366	307	predicted protein [Populus trichocarpa]	0.872	0.957	0.672	1e-109
224088406	312	predicted protein [Populus trichocarpa]	0.896	0.967	0.681	1e-106
356557001	340	PREDICTED: uncharacterized protein LOC10	0.780	0.773	0.694	1e-102
388519229	347	unknown [Lotus japonicus]	0.810	0.786	0.68	1e-102
449451293	318	PREDICTED: uncharacterized protein LOC10	0.842	0.893	0.656	1e-101
449493355	318	PREDICTED: uncharacterized LOC101212722	0.842	0.893	0.656	1e-101
356528681	338	PREDICTED: uncharacterized protein LOC10	0.780	0.778	0.683	1e-101
147789753	249	hypothetical protein VITISV_025620 [Viti	0.688	0.931	0.762	1e-100

>gi|359482045|ref|XP_002280962.2| PREDICTED: uncharacterized protein LOC100254596 [Vitis vinifera]

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/327 (67%), Positives = 258/327 (78%), Gaps = 15/327 (4%)

Query: 16  LHFPSARHDFPSAH-----HDFPSLSRPRNLNSHVHFPSLSTKTITPIPSPPIPPKITQT 70
           +H  S    FP +H     HDF +LSRPR     +HFP LS+KT   IP  P P K  + 
Sbjct: 5   IHLSSKHSSFPKSHVLHSHHDFSTLSRPRI----IHFPILSSKTSITIP--PKPSKSPEL 58

Query: 71  PSISPPPNSPHS----EFQEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSL 126
           PSISPP +        +F+EKMLYLDSIG+D FSLINDHPPIV ASL+DIKSTVD + S+
Sbjct: 59  PSISPPSSPDPPDPHSQFEEKMLYLDSIGLDLFSLINDHPPIVCASLDDIKSTVDFLYSM 118

Query: 127 DFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKT 186
            F A EF RI  MCPEIL SR SDI+PVFTFLLREA+V+GSDL+RV++RRPRLL   VK 
Sbjct: 119 GFTALEFCRICGMCPEILNSRVSDIVPVFTFLLREARVDGSDLRRVVNRRPRLLACNVKN 178

Query: 187 RLRPTLYFLQSMGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLF 246
           RLRPTLYFLQS+GI+EVNKHT LLSCSVE+KLIPR+ Y +KIGFSKR+A +M RRFPQLF
Sbjct: 179 RLRPTLYFLQSIGISEVNKHTNLLSCSVEEKLIPRIDYLEKIGFSKRDAVSMVRRFPQLF 238

Query: 247 NYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVL 306
           N+S+KDN E K NYFVV MGR+L+ELKEFPQYFSFSLENRIKPRHQ CV+KGVCFPL ++
Sbjct: 239 NHSIKDNLEPKFNYFVVEMGRELRELKEFPQYFSFSLENRIKPRHQCCVEKGVCFPLPIM 298

Query: 307 LKTSEAQFHRRLDVCCNSSMPLTKSPL 333
           LKT+EA+FH RL+VCCNSS PL  SPL
Sbjct: 299 LKTTEAKFHGRLEVCCNSSGPLRTSPL 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578583|ref|XP_002530153.1| conserved hypothetical protein [Ricinus communis] gi|223530314|gb|EEF32208.1| conserved hypothetical protein [Ricinus communis]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/310 (69%), Positives = 245/310 (79%), Gaps = 15/310 (4%)

Query: 15  KLHFPSAR---------HDFPSAHHDFPSLSRPRNLNSHVHFPSLSTKTITPIPSPPIPP 65
           KLHF SA          ++FPS  HDF SLS  R L    HFPSLS+KT T IP P   P
Sbjct: 4   KLHFLSAHKFSLPCTKLNNFPSPCHDFHSLSCSRTL----HFPSLSSKTNTTIPLPRKSP 59

Query: 66  KITQTPSISPPPNSPHSEFQEKMLYLDSIGVDFFSLINDHPPIV-SASLNDIKSTVDLIT 124
           K T+ P  +PPP  P  +FQEKMLYLDS+G+D FS+ + H  I+ SASL +IKSTVDL T
Sbjct: 60  KTTE-PINNPPPQKPDDDFQEKMLYLDSLGLDIFSIADHHRRIILSASLTNIKSTVDLFT 118

Query: 125 SLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAV 184
           S++F + EFRRIVSMCPEIL   +S ILP FTFLLREA+VNGSDLKRVI+RRPRLLVS V
Sbjct: 119 SMNFTSIEFRRIVSMCPEILALNSSSILPNFTFLLREARVNGSDLKRVINRRPRLLVSNV 178

Query: 185 KTRLRPTLYFLQSMGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQ 244
           K RLRPTLYFLQS+GI EVNKHTYLLSCSVEDKL+PR+ YF+K+GF  +EA +MFRRFP 
Sbjct: 179 KHRLRPTLYFLQSIGIEEVNKHTYLLSCSVEDKLLPRIDYFEKMGFDYKEAVSMFRRFPP 238

Query: 245 LFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLN 304
           LFNYS+KDN E KLNYFVV MGRDLKE+KEFPQYFSFSLENRIKPRHQ+CV+KGV FPL 
Sbjct: 239 LFNYSIKDNIEPKLNYFVVEMGRDLKEVKEFPQYFSFSLENRIKPRHQSCVEKGVYFPLR 298

Query: 305 VLLKTSEAQF 314
            LLKT+E QF
Sbjct: 299 ALLKTNEEQF 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138366|ref|XP_002322796.1| predicted protein [Populus trichocarpa] gi|222867426|gb|EEF04557.1| predicted protein [Populus trichocarpa]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/311 (67%), Positives = 249/311 (80%), Gaps = 17/311 (5%)

Query: 25  FPSAHHDF-PSLSRPRNLNSHVHFPSLSTKTITPIPSPPIPPKITQTPSISP-------- 75
           FP +HHD+ P+LS PR L    HFP+LS+KT T    PP P K  +TPS+S         
Sbjct: 2   FPLSHHDYCPALSCPRTL----HFPTLSSKTNTA-SLPPKPLKTPETPSVSSHHIPPPPQ 56

Query: 76  --PPNSPHSEFQEKMLYLDSIGVDFFSLINDHPP-IVSASLNDIKSTVDLITSLDFAAAE 132
             P   P++EFQEK+LYLDSIG+D  SLIN H P I+SASL++IKS +DL+TS++F   E
Sbjct: 57  SPPQEPPNTEFQEKILYLDSIGLDISSLINHHRPFILSASLSNIKSIIDLLTSMNFTPQE 116

Query: 133 FRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTL 192
           FRRI+SMCPEILTS  S + PV TFLLREA+VNG DLK VI+RRPRLLVS+VK  LRPTL
Sbjct: 117 FRRIISMCPEILTSTPSTVTPVITFLLREARVNGYDLKHVINRRPRLLVSSVKYCLRPTL 176

Query: 193 YFLQSMGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKD 252
           YFLQS+G+ EV +HTYLLSCSVE KL+PR+QYF+KIGFS ++A +MFRRFPQLFNYS+K+
Sbjct: 177 YFLQSIGLEEVKRHTYLLSCSVEKKLLPRIQYFEKIGFSYKDAVSMFRRFPQLFNYSIKN 236

Query: 253 NYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEA 312
           N E KLNYFVV MGRDLKELKEFPQYFSFSLENRIKPRHQ CV+KG+CFPL+ LLKTS+ 
Sbjct: 237 NIEPKLNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHQCCVEKGLCFPLHTLLKTSQE 296

Query: 313 QFHRRLDVCCN 323
           +F  R+DVCCN
Sbjct: 297 EFMSRIDVCCN 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088406|ref|XP_002308443.1| predicted protein [Populus trichocarpa] gi|222854419|gb|EEE91966.1| predicted protein [Populus trichocarpa]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/311 (68%), Positives = 246/311 (79%), Gaps = 9/311 (2%)

Query: 27  SAHHDFPSLSRPRNLNSHVHFPSLSTKTITPIPSPPIPPKITQTPSISP---PPNSPHSE 83
           S H  F  LS PRNL    HFPSLS KT T I  P  P K  + PSIS    PP  P+SE
Sbjct: 1   SFHDYFSPLSCPRNL----HFPSLSFKTNT-ISLPLKPLKTPEIPSISSHHTPPPPPNSE 55

Query: 84  FQEKMLYLDSIGVDFFSLINDHPPIV-SASLNDIKSTVDLITSLDFAAAEFRRIVSMCPE 142
           FQEKMLYLDSIG+D FSLI +H PI+ SASL +IKS +DL+TS +F   EFRRI+SMCPE
Sbjct: 56  FQEKMLYLDSIGLDIFSLIKNHRPIILSASLPNIKSIIDLLTSKNFTPREFRRIISMCPE 115

Query: 143 ILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAE 202
           IL S  S I P+ TFLLREA+V+GSDLK VI+RRPRLLVS+VK  LRP LYFL+++G+ E
Sbjct: 116 ILNSTPSTITPIITFLLREARVSGSDLKHVINRRPRLLVSSVKHCLRPALYFLKNIGLEE 175

Query: 203 VNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFV 262
           V +HTYLLSCSVE KL+PR+QYF+KIGFS  +A ++FRRFPQLFN+S+K+N E KLNYFV
Sbjct: 176 VKRHTYLLSCSVETKLLPRIQYFEKIGFSHEDAVSIFRRFPQLFNFSIKNNIEPKLNYFV 235

Query: 263 VGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRLDVCC 322
           V MGRDLKELKEFPQYFSFSLENRIKPRHQ CV+KG+ FPL+ LLKT EAQF  R+D CC
Sbjct: 236 VEMGRDLKELKEFPQYFSFSLENRIKPRHQCCVEKGLYFPLHTLLKTREAQFVSRIDACC 295

Query: 323 NSSMPLTKSPL 333
           NSS+PL  SPL
Sbjct: 296 NSSVPLRSSPL 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557001|ref|XP_003546807.1| PREDICTED: uncharacterized protein LOC100794678 [Glycine max]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/265 (69%), Positives = 219/265 (82%), Gaps = 2/265 (0%)

Query: 69  QTPSISPPPNSPHSEFQEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDF 128
           + P  + PPN   + FQ+K+LYL+SIG+D F LI +HP +++ SL DI+STV+ ITSLDF
Sbjct: 68  RCPKQTIPPND--TGFQKKLLYLESIGIDSFLLIENHPTVITTSLADIRSTVEYITSLDF 125

Query: 129 AAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRL 188
            A EFRR+V MCPEILT++ SD++PVFTFL RE  V GSD+KRVI+RRPRLLVS+V  RL
Sbjct: 126 TAIEFRRMVGMCPEILTTQVSDLIPVFTFLHREVHVPGSDIKRVINRRPRLLVSSVSKRL 185

Query: 189 RPTLYFLQSMGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNY 248
           RPTLYFLQS+GI EVNKHT LLSCSVE+K +PR+ YF+ IGFS+R+AT+MFRRFPQLF Y
Sbjct: 186 RPTLYFLQSIGIEEVNKHTDLLSCSVEEKFMPRIDYFENIGFSRRDATSMFRRFPQLFCY 245

Query: 249 SVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLK 308
           S+K+N E K +YFVV MGRDLKELKEFPQYFSFSLENRIKPRH+ CV+ GVCFPL  LLK
Sbjct: 246 SIKNNLEPKYSYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVEMGVCFPLPALLK 305

Query: 309 TSEAQFHRRLDVCCNSSMPLTKSPL 333
           TSE +F  RLDVC NSS PL  SPL
Sbjct: 306 TSEVKFQSRLDVCVNSSTPLKTSPL 330

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519229|gb|AFK47676.1| unknown [Lotus japonicus]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/275 (68%), Positives = 221/275 (80%), Gaps = 2/275 (0%)

Query: 59  PSPPIPPKITQTPSISPPPNSPHSEFQEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKS 118
           P   +PPK T       PPN   + F+EK+LYL+SIG+D FSLI +HP +++ASL DIKS
Sbjct: 67  PKQTLPPKDTVFKEKVIPPND--TGFEEKVLYLESIGIDSFSLIENHPMLITASLADIKS 124

Query: 119 TVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPR 178
           TV+ ITS+DF+A EF+RIV MCPEILT++ SDI+PVFTFL RE  V GSD+KRVI+RRPR
Sbjct: 125 TVEYITSMDFSAIEFQRIVGMCPEILTTKVSDIIPVFTFLHREVHVKGSDIKRVINRRPR 184

Query: 179 LLVSAVKTRLRPTLYFLQSMGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAM 238
           L+V +V  RLRPTLYFLQS+GI EV+KHT LLSCSVEDK +PR+ YF+ IGFS+ +AT+M
Sbjct: 185 LIVCSVNNRLRPTLYFLQSIGIEEVSKHTDLLSCSVEDKFLPRIDYFENIGFSRDDATSM 244

Query: 239 FRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKG 298
           FRRFPQLF  S+K+N E K NYFVV MGRDLKELKEFPQYFSFSLENRIKPRH+ CV+ G
Sbjct: 245 FRRFPQLFCCSIKNNLEPKYNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKQCVELG 304

Query: 299 VCFPLNVLLKTSEAQFHRRLDVCCNSSMPLTKSPL 333
           VCF L VLLKTSE  F  RLD+C NSS PL  SPL
Sbjct: 305 VCFTLPVLLKTSEVTFRNRLDLCVNSSTPLETSPL 339

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451293|ref|XP_004143396.1| PREDICTED: uncharacterized protein LOC101212722 [Cucumis sativus]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/294 (65%), Positives = 231/294 (78%), Gaps = 10/294 (3%)

Query: 32  FPSLSRPRNLNSHVHFPSLS---TKTITPIPSPPIPPKITQTPSISPPP---NSPHSEFQ 85
           FPSL R R L    HFP LS   T  I P   PP  P I       PP       HS+FQ
Sbjct: 24  FPSLPRSRTL----HFPVLSNSRTSFIFPSKLPPRNPAIPPLSPPLPPSPPHTDHHSDFQ 79

Query: 86  EKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILT 145
           EKML+LDSIG+DF S+I DHPP+ SASL DI+S VD +TS++F   E RRIV MCPEILT
Sbjct: 80  EKMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTTLELRRIVGMCPEILT 139

Query: 146 SRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVNK 205
           SRAS ++P+FTFLLREA+V+GSD+KRVI+RRPRLL  +VK +LRPTLYFLQS+GI+EV+K
Sbjct: 140 SRASVLIPIFTFLLREARVDGSDIKRVINRRPRLLACSVKDQLRPTLYFLQSIGISEVHK 199

Query: 206 HTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGM 265
           HT LLSCSVE+KLIPR+++F+ +GFS+R+A  MFRRFPQLF YS+K+N E KLNYFVV M
Sbjct: 200 HTSLLSCSVEEKLIPRIEFFENLGFSRRDALIMFRRFPQLFCYSIKENLEPKLNYFVVEM 259

Query: 266 GRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRLD 319
           GR+LKELKEFP YFSFSLENRIKPRHQ+CV+KGVCFPL  LLK+SE +F  +L+
Sbjct: 260 GRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKSSEMKFREKLE 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493355|ref|XP_004159265.1| PREDICTED: uncharacterized LOC101212722 [Cucumis sativus]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/294 (65%), Positives = 231/294 (78%), Gaps = 10/294 (3%)

Query: 32  FPSLSRPRNLNSHVHFPSLS---TKTITPIPSPPIPPKITQTPSISPPP---NSPHSEFQ 85
           FPSL R R L    HFP LS   T  I P   PP  P I       PP       HS+FQ
Sbjct: 24  FPSLPRSRTL----HFPVLSNSRTSFIFPSKLPPRNPAIPPLSPPLPPSPPHTDHHSDFQ 79

Query: 86  EKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILT 145
           EKML+LDSIG+DF S+I DHPP+ SASL DI+S VD +TS++F   E RRIV MCPEILT
Sbjct: 80  EKMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTTLELRRIVGMCPEILT 139

Query: 146 SRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVNK 205
           SRAS ++P+FTFLLREA+V+GSD+KRVI+RRPRLL  +VK +LRPTLYFLQS+GI+EV+K
Sbjct: 140 SRASVLIPIFTFLLREARVDGSDIKRVINRRPRLLACSVKDQLRPTLYFLQSIGISEVHK 199

Query: 206 HTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGM 265
           HT LLSCSVE+KLIPR+++F+ +GFS+R+A  MFRRFPQLF YS+K+N E KLNYFVV M
Sbjct: 200 HTSLLSCSVEEKLIPRIEFFENLGFSRRDALIMFRRFPQLFCYSIKENLEPKLNYFVVEM 259

Query: 266 GRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRLD 319
           GR+LKELKEFP YFSFSLENRIKPRHQ+CV+KGVCFPL  LLK+SE +F  +L+
Sbjct: 260 GRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKSSEMKFREKLE 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528681|ref|XP_003532928.1| PREDICTED: uncharacterized protein LOC100804440 [Glycine max]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/265 (68%), Positives = 218/265 (82%), Gaps = 2/265 (0%)

Query: 69  QTPSISPPPNSPHSEFQEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDF 128
           + P  + PP+   + FQ+K+LYL+SIG+D FSLI +HP +++ SL DIKSTV+ ITSLDF
Sbjct: 66  RCPKQTIPPDD--TGFQKKLLYLESIGIDSFSLIENHPTVITTSLADIKSTVEYITSLDF 123

Query: 129 AAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRL 188
            A EFRR+V MCP+ILT++ SD++PVFTFL RE  V GS +KRVI+RRPRLLV +V  RL
Sbjct: 124 TAIEFRRMVGMCPDILTTQVSDLIPVFTFLHREVHVPGSHIKRVINRRPRLLVCSVSKRL 183

Query: 189 RPTLYFLQSMGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNY 248
           RPTLYFLQS+GI EVNKHT LLSCSVE+K +PR+ YF+ IGFS+R+AT+MFRRFPQLF Y
Sbjct: 184 RPTLYFLQSIGIEEVNKHTDLLSCSVEEKFMPRIDYFENIGFSRRDATSMFRRFPQLFCY 243

Query: 249 SVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLK 308
           S+K+N E K +YFVV MGRDLKELKEFPQYFSFSLENRI+PRH+ CV+ GVCFPL  LLK
Sbjct: 244 SIKNNLEPKYSYFVVEMGRDLKELKEFPQYFSFSLENRIEPRHKQCVEMGVCFPLPALLK 303

Query: 309 TSEAQFHRRLDVCCNSSMPLTKSPL 333
           TSE +F  RLDVC NSS PL  SPL
Sbjct: 304 TSEVKFQSRLDVCVNSSTPLKTSPL 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789753|emb|CAN67409.1| hypothetical protein VITISV_025620 [Vitis vinifera]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/232 (76%), Positives = 203/232 (87%)

Query: 88  MLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSR 147
           MLYLDSIG+D FSLINDHPPIV ASL+DIKSTVD + S+ F A EF RI  MCPEIL SR
Sbjct: 1   MLYLDSIGLDLFSLINDHPPIVCASLDDIKSTVDFLYSMGFTALEFCRICGMCPEILNSR 60

Query: 148 ASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVNKHT 207
            SDI+PVFTFLLREA+V+GSDL+RV++RRPRLL   VK RLRPTLYFLQS+GI+EVNKHT
Sbjct: 61  VSDIVPVFTFLLREARVDGSDLRRVVNRRPRLLACNVKNRLRPTLYFLQSIGISEVNKHT 120

Query: 208 YLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGR 267
            LLSCSVE KLIPR+ Y +KIGFSKR+A +M RRFPQLFN+S+KDN E K NYFVV MGR
Sbjct: 121 NLLSCSVEXKLIPRIDYLEKIGFSKRDAVSMVRRFPQLFNHSIKDNLEPKFNYFVVEMGR 180

Query: 268 DLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRLD 319
           +L+ELKEFPQYFSFSLENRIKPRHQ CV+KGVCFPL ++LKT+EA+FH RL+
Sbjct: 181 ELRELKEFPQYFSFSLENRIKPRHQCCVEKGVCFPLPIMLKTTEAKFHGRLE 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
TAIR|locus:2039240	333	EMB3114 "AT2G36000" [Arabidops	0.925	0.936	0.529	1.8e-85
TAIR|locus:2062328	303	AT2G34620 "AT2G34620" [Arabido	0.700	0.778	0.398	9.1e-45
TAIR|locus:2056745	283	EMB93 "EMBRYO DEFECTIVE 93" [A	0.697	0.830	0.402	4.5e-43
TAIR|locus:2087926	274	AT3G18870 "AT3G18870" [Arabido	0.673	0.828	0.336	8.8e-31
TAIR|locus:505006461	493	MDA1 "AT4G14605" [Arabidopsis	0.667	0.456	0.290	6.8e-22
TAIR|locus:2162092	496	AT5G55580 "AT5G55580" [Arabido	0.673	0.457	0.265	1.1e-20
TAIR|locus:2049329	641	EMB2219 "embryo defective 2219	0.688	0.361	0.288	7e-19
TAIR|locus:2207420	591	AT1G78930 "AT1G78930" [Arabido	0.664	0.379	0.245	9.7e-19
TAIR|locus:2051814	507	AT2G44020 "AT2G44020" [Arabido	0.709	0.471	0.267	8e-13
TAIR|locus:2153433	500	PTAC15 "AT5G54180" [Arabidopsi	0.626	0.422	0.257	9.5e-12

TAIR|locus:2039240 EMB3114 "AT2G36000" [Arabidopsis thaliana (taxid:3702)]

 Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
 Identities = 168/317 (52%), Positives = 219/317 (69%)

Query:    26 PSAHHDFPSLSRPRNLN-SHVHFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEF 84
             PS HH+FPSLSR R  N   + F                                  S  
Sbjct:    14 PSLHHNFPSLSRLRFNNFPALSFKPNTSSSSSSFFKSPDIPSLSSTTTTTTTTETLESSI 73

Query:    85 QEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITS--LDFAAAEFRRIVSMCPE 142
              EK++YLDS+G+DF +LIN HPP++S +L+ ++S VD +T+  ++F   +FRR+VSMCPE
Sbjct:    74 HEKLIYLDSLGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCPE 133

Query:   143 ILTSR-ASDILPVFTFLLREAKVNGS-DLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGI 200
             +LTS   S  +PV TFLLRE  V+   DL++ + RRPRLL  +V  +LRPTLYFLQ +GI
Sbjct:   134 LLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGI 193

Query:   201 AEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNY 260
              + +KHTYLLSCSV++KL+PR+ YF+K+GFS+R ATAMF+RFPQLFNYS+ +NYE KL Y
Sbjct:   194 LDPHKHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKY 253

Query:   261 FVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRLDV 320
              +V MGRD++E+ EFPQYFSFSLENRIKPRH+AC  KGV FPL V+LKT+EA F   L+V
Sbjct:   254 LMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNEAGFRDTLEV 313

Query:   321 CCNSSMPLTKSPLSPIK 337
             CC+SS PL  S L  ++
Sbjct:   314 CCDSSPPLKTSRLVTVQ 330

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2062328 AT2G34620 "AT2G34620" [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 96/241 (39%), Positives = 159/241 (65%)

Query:    83 EFQEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPE 142
             + +EK+L L+ +G+D    ++ +P + SA L+ I+S +  + S      +  RI+ MCP+
Sbjct:    54 QMKEKILCLELMGIDSGKALSLNPCLCSAPLDSIQSVLHFLQSKGIYPNDLPRILGMCPK 113

Query:   143 ILTSRA-SDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIA 201
             ILTS   +++ PVF FL  +  V  +  +RVI + PRLL+S+V+ +L+P L++LQ +G+ 
Sbjct:   114 ILTSDVRTELYPVFMFLSNDLHVPENAFRRVIKKCPRLLISSVEDQLKPALFYLQRLGLK 173

Query:   202 EVNKHTY----LLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERK 257
             ++    Y    LL  SVE  LIP+L++ + IGFS+ EA  M  R P LF +S+++N++ K
Sbjct:   174 DLEALAYQDPILLVSSVEHTLIPKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFKPK 233

Query:   258 LNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRR 317
             L+YF+  +   L+ LKEFPQYF+FSLE RIKPRH   +++G+  PL+++LK+++ +F + 
Sbjct:   234 LDYFMSEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQL 293

Query:   318 L 318
             L
Sbjct:   294 L 294

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:2056745 EMB93 "EMBRYO DEFECTIVE 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 97/241 (40%), Positives = 149/241 (61%)

Query:    84 FQEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEI 143
             F+EK++YL  + VD    +  +P + SA ++ + S   L++S   +     RI+ M P++
Sbjct:    32 FREKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDL 91

Query:   144 LTSRA-SDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAE 202
             LTS   S+ILPV  FL  E  ++  D+ + ISR PRLL+S+V  +LRP L FL+++G   
Sbjct:    92 LTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVG 151

Query:   203 ----VNKHTYLLSCSVEDKLIPRLQYFQK-IGFSKREATAMFRRFPQLFNYSVKDNYERK 257
                  +++T LL  +VE  LIP+++Y ++ +GF++ E   M  R P L  YSV +N   K
Sbjct:   152 RDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPK 211

Query:   258 LNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRR 317
             + +F+  M  D+KELK FPQYFSFSLE +IKPRH+   + G+  PL+ +LK S+ QF+  
Sbjct:   212 VEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFNHW 271

Query:   318 L 318
             L
Sbjct:   272 L 272

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0071452 "cellular response to singlet oxygen" evidence=IGI

TAIR|locus:2087926 AT3G18870 "AT3G18870" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 81/241 (33%), Positives = 136/241 (56%)

Query:    85 QEKMLYLDSIGVDFFSLINDHPPIVSAS--LNDIKSTVDLITSLDFAAAEFRRIVSMCPE 142
             +E + +L S+G+     +  +P +   +  L+ I S V+L+ S   +  +F R+V +CP+
Sbjct:    37 RENLRHLSSLGI-----VPQNPRLAPPANDLSVILSAVNLLKSKGISDEDFPRLVFLCPQ 91

Query:   143 IL--TSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGI 200
             +   T   S + PVF FL  E   +  + + +I   P +L S V+  LRPTL +L+ +G+
Sbjct:    92 LFSPTFDISKLDPVFDFLTGELGASAEESRGLIVNCPNILFSDVEYCLRPTLVYLKELGV 151

Query:   201 AEVNK----HTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYER 256
               +N+    + ++L+  VE KL  ++++ + IGF   EA  +  R P +F YSV+DN   
Sbjct:   152 RNLNRASKTNAHVLNTRVE-KLRAKMRFLKSIGFEHEEAARVCGRIPAIFGYSVEDNLRP 210

Query:   257 KLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHR 316
             K  + V  M R+L+ELK+FPQYF+FSL  RI+PRH     K V   L+ +L   + +F+ 
Sbjct:   211 KFEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHWHLKKKNVRVSLSRMLMWGDQKFYS 270

Query:   317 R 317
             +
Sbjct:   271 K 271

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:505006461 MDA1 "AT4G14605" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 6.8e-22, P = 6.8e-22
 Identities = 68/234 (29%), Positives = 118/234 (50%)

Query:    90 YLDSIGV---DFFSLINDHPPIVSASLND-IKSTVDLITSLDFAAAEFRRIVSMCPEILT 145
             +L  +G+   D  +++   P I   SL D +K T+  + +L     ++ +I+S  P ILT
Sbjct:   238 FLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAILT 297

Query:   146 SRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGI-AEVN 204
                  +     FL  +  +    + R+++R P ++  +V+ +LRPT+ + +S+ +   V 
Sbjct:   298 YSRQKLTSTVEFL-SQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLNVDVAVL 356

Query:   205 KHT--YLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFV 262
              H        S+E  L P  ++F + GF   E   M  R+  L+ +S+K+N   K +YF 
Sbjct:   357 LHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDYFQ 416

Query:   263 VGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHR 316
               M     EL +FPQ+F +SL+ RIKPR++     GV   LN +L  S  +F +
Sbjct:   417 T-MDYPKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEK 469

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2162092 AT5G55580 "AT5G55580" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 65/245 (26%), Positives = 124/245 (50%)

Query:    85 QEKMLYLDSIGV---DFFSLINDHPPIVSASL-NDIKSTVDLITSLDFAAAEFRRIVSMC 140
             QE++ YL S+GV   D   ++   P I+  ++ N++K+ +  +  L    ++  +IV+  
Sbjct:   220 QERLDYLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAAT 279

Query:   141 PEILT-SRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFL-QSM 198
             P + + S  + + P   +L+ E  +  +D+ +V+   P++LV  +         FL + +
Sbjct:   280 PSLFSYSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLSKEL 339

Query:   199 G------IAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKD 252
             G      +  V KH  LL  S++D  +PR+ + + IG    +   +     Q+ + S++D
Sbjct:   340 GAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLED 399

Query:   253 NYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVD-----KGVCFPLNVLL 307
             N + K  Y V  +  ++  L ++P Y S SL+ RI+PRH+  V+     KG  FPL+ L+
Sbjct:   400 NLKPKYMYLVNELNNEVHILTKYPMYLSLSLDQRIRPRHRFLVELKKVRKGP-FPLSSLV 458

Query:   308 KTSEA 312
                E+
Sbjct:   459 PNDES 463

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.0e-19, P = 7.0e-19
 Identities = 71/246 (28%), Positives = 119/246 (48%)

Query:    85 QEKMLYLDSIGV---DFFSLINDHPPIVSASLNDI-KSTVDLITSLDFAAAEFRRIVSMC 140
             ++K+ YL   G+   +   L+   P ++  S+ +  K  V     L       +RI+ + 
Sbjct:   353 EKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVK 412

Query:   141 PEILT-SRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSM- 198
             P +        I P   FL +E  +    +  ++ + P LL +++  ++RP + FL +  
Sbjct:   413 PILYCIDLEKTIAPKVRFL-QEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRA 471

Query:   199 GIAE--VNK----HTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKD 252
             G+ +  + K       LL CS+  KL P ++Y+  +G    +   M   FP L  Y+V D
Sbjct:   472 GVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV-D 530

Query:   253 NYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEA 312
             N   K  Y    M R L++L EFP++FS+SLE RI PRH   V+  V F L  +L  ++ 
Sbjct:   531 NLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDE 590

Query:   313 QFHRRL 318
             +F RR+
Sbjct:   591 EFERRV 596

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2207420 AT1G78930 "AT1G78930" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 9.7e-19, P = 9.7e-19
 Identities = 57/232 (24%), Positives = 111/232 (47%)

Query:    90 YLDSI-GVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRA 148
             Y +S+  +D    I   P ++  S ++++  V     L        +++   P++L  + 
Sbjct:   344 YSESVLKMDIDHAIRRWPLLLGCSASNMEMMVKEFDKLGVRDKRMGKVIPKMPQLLLCKP 403

Query:   149 SDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAE------ 202
              + L V  FL  +       + +++ R P +   +++  L+  L FL   G++       
Sbjct:   404 QEFLKVVCFL-EDLGFQKEIVGQILCRCPEIFGCSIEKTLQKKLIFLTRFGVSTTHFPRI 462

Query:   203 VNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFV 262
             + K+   L    +  ++PRL+Y  +IG S+RE   M R+F  +  YS+      K  + V
Sbjct:   463 IKKYPEFLIYDADKTVLPRLKYLMEIGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLV 522

Query:   263 VGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQF 314
               M + ++E+ E+P+YFS+SLE RIKPR +    + +   L  +L  ++ +F
Sbjct:   523 NSMEKPVREVIEYPRYFSYSLEKRIKPRFRVLKGRNIECTLQEMLGKNDEEF 574

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 8.0e-13, P = 8.0e-13
 Identities = 68/254 (26%), Positives = 115/254 (45%)

Query:    90 YLDSIGV---DFFSLINDHPPIVSASLND-IKSTVDLITSLDFAAAEFRRIVSMCPEILT 145
             YL SIGV   D   ++  +P ++   +   IK  VD + S+        R++     I+ 
Sbjct:   222 YLVSIGVSPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLISIGLPKKIVARMLEKRSYIVG 281

Query:   146 SRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYF------LQSMG 199
                 + +      L    V    L  +I++ P++L   VK ++    YF      +   G
Sbjct:   282 YNLEETVKPNVDCLISFGVKKELLPLLIAQYPQILGLPVKAKMSTQQYFFSLKLKIDPEG 341

Query:   200 IAEV-NKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKL 258
              A V  K   ++S   ++ ++  +++     F   +   M  R PQ+    V +  +   
Sbjct:   342 FARVVEKMPQIVSLK-QNVIMKPIEFLLGRAFQVEDIAKMVVRCPQILCSRV-ELMKNSY 399

Query:   259 NYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRL 318
              ++   MGR +KEL E+P+YF++SLE+RIKPR+Q    KG+   LN  L  S+ +F  RL
Sbjct:   400 YFYKTEMGRPMKELVEYPEYFTYSLESRIKPRYQKLQSKGIRSSLNWFLNCSDQRFEERL 459

Query:   319 DVCCNSSMPLTKSP 332
                 N   P T+ P
Sbjct:   460 QG--NFIDPDTEGP 471

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2153433 PTAC15 "AT5G54180" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 9.5e-12, P = 9.5e-12
 Identities = 57/221 (25%), Positives = 104/221 (47%)

Query:   106 PPIVSASLNDIKSTVDLITSL-DFAAAEFRRIVSMCPEIL-TSRASDILPVFTFLLREAK 163
             P I+S S+  +   V+ + S     + +  +IV + P ++ TS+   + P   FL +E  
Sbjct:   276 PAILSYSVEHMNGQVEFLKSFAGLTSEQVFKIVHVFPNVISTSKERKLRPRIEFL-KECG 334

Query:   164 VNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVNKHTYLLSCSV----EDKLI 219
              +   + + +S+ P L+++  +  L   L FL  +G     K       +V     D + 
Sbjct:   335 FDSPGMFKFLSKAP-LILALSENNLSHKLGFLVKIGYKHRTKELAFAMGAVTRTSSDNMQ 393

Query:   220 PRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYF 279
               +  +   G S  +  AM  + PQ+  Y+   + E KL Y +  MGR+++EL  FP + 
Sbjct:   394 RVIGLYLSYGLSFEDILAMSTKHPQVLQYNYT-SLEEKLEYLIEYMGREVEELLAFPAFL 452

Query:   280 SFSLENRIKPRHQACV-DKGVCFPLNVLLKTSEAQFHRRLD 319
              + L++RIK R++  +  +G    LN LL  S  +F +  D
Sbjct:   453 GYKLDSRIKHRYEEKLKSRGENMSLNKLLTVSAERFSKAAD 493

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021526001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (335 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	337
pfam02536	345	pfam02536, mTERF, mTERF	5e-29
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	1e-23
pfam02536	345	pfam02536, mTERF, mTERF	1e-09
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	8e-08
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	6e-07
pfam02536	345	pfam02536, mTERF, mTERF	8e-04

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score =  114 bits (286), Expect = 5e-29
 Identities = 70/263 (26%), Positives = 119/263 (45%), Gaps = 16/263 (6%)

Query: 63  IPPKITQTPSISPPPNSPHSEFQEKMLYLDSIGV---DFFSLINDHPPIVSASLNDIKST 119
              K+ + P   P  N+ +      +  L  +GV     FSL+   P  V       + +
Sbjct: 86  KSSKLEKYPESLPQGNNGNKIR--NVSVLRELGVPPKLLFSLLISRPRPVCGKEV-FEES 142

Query: 120 VDLITSLDFAAAEFRRIVSMCPEILTSRASD-ILPVFTFLLREAKVNGSDLKRVISRRPR 178
           +  +  + F    F+R+++  P +L   +   I P   FL +    +  D+  ++ + P 
Sbjct: 143 LKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFL-KSLGFSVEDVWAILKKCPE 201

Query: 179 LLVSAVKTRLRPTLYFLQS--MGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREAT 236
           LL S+ K +L+          +    V K         E K++ ++++   +GFS+ E  
Sbjct: 202 LLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYSEQKILNKIEFLLGLGFSREEIA 261

Query: 237 AMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPR---HQA 293
            M +R PQL   SV +  ++K  + V  M   LKEL EFPQ F +SLE RIKPR    +A
Sbjct: 262 KMVKRCPQLLGLSV-EKVKKKTEFLVKEMNWPLKELVEFPQVFGYSLEKRIKPRCNVVKA 320

Query: 294 CVDKGVCF--PLNVLLKTSEAQF 314
            + KG      L+ +LK ++ +F
Sbjct: 321 LMSKGKSILPSLSSMLKCTDEEF 343

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score =  100 bits (252), Expect = 1e-23
 Identities = 72/245 (29%), Positives = 113/245 (46%), Gaps = 19/245 (7%)

Query: 90  YLDSIGV---DFFSLINDHPPIVSASL-NDIKSTVDLITSLDFAAAEFRRIVSMCPEILT 145
           YL SIGV   D   ++   P I+   + N+IK  VD + SL        RI+   P IL 
Sbjct: 202 YLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILG 261

Query: 146 SRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSM------G 199
               + +      L E  V    L  VI++ P +L   +K +L    Y+L S        
Sbjct: 262 FDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPED 321

Query: 200 IAEV-NKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSV---KDNYE 255
              V  K   ++S +  +  +  +++ +  GFS ++   M  R PQ+   ++   K + E
Sbjct: 322 FGRVIEKLPQIVSLN-RNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLE 380

Query: 256 RKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFH 315
               +F   M R LKEL EFP YF++ LE+RIKPR++    KG+   L   L  S+ +F 
Sbjct: 381 ----FFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKFE 436

Query: 316 RRLDV 320
           +R+  
Sbjct: 437 QRMSG 441

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 41/236 (17%), Positives = 84/236 (35%), Gaps = 42/236 (17%)

Query: 95  GVDFFSLINDHPPIVSASL-NDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILP 153
                ++I D+P ++ A    +++  +  + S   + +E  +IVS  P+IL  +    + 
Sbjct: 11  DSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILGKKGVKSIS 70

Query: 154 VFTFLLREAKVNGSDLKRVISRRP-------------------------RLLVSAVKTRL 188
                L++  V   D    + + P                         +LL S + +R 
Sbjct: 71  SVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLLFSLLISRP 130

Query: 189 RP---------TLYFLQSMGIAE------VNKHTYLLSCSVEDKLIPRLQYFQKIGFSKR 233
           RP         +L  +  MG         + K   LL  S +  + P +++ + +GFS  
Sbjct: 131 RPVCGKEVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFSVE 190

Query: 234 EATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKP 289
           +  A+ ++ P+L   S K    +           +   + +    F    E +I  
Sbjct: 191 DVWAILKKCPELLGSSEK-KKLQTQEILKTCGLLEFLSVIKKMPQFVSYSEQKILN 245

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 53.2 bits (128), Expect = 8e-08
 Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 7/103 (6%)

Query: 188 LRPTLYFLQSMG--IAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQL 245
           +R  + FL  +G  I ++N++  +L CSV+  +IP L Y +K+G ++     + RR+PQ+
Sbjct: 92  MRERVEFLHKLGLTIEDINEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQV 151

Query: 246 FNYSVKDNYERKLNYFVVGMGRDLKE----LKEFPQYFSFSLE 284
            + SV  +    + Y + G+    ++    L+ +P+   F LE
Sbjct: 152 LHASVVVDLAPVVKY-LQGLDVKRQDIPRVLERYPELLGFKLE 193

Length = 487

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 10/159 (6%)

Query: 150 DILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVN----- 204
           +++PV  +L  +  V  S L  ++ R P++L ++V   L P + +LQ + +   +     
Sbjct: 123 NMIPVLDYL-EKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVL 181

Query: 205 -KHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFV- 262
            ++  LL   +E  +   + Y   IG + R+   M  RFP++    V +N + K++Y   
Sbjct: 182 ERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLES 241

Query: 263 VGMGRDL--KELKEFPQYFSFSLENRIKPRHQACVDKGV 299
           +G+ R    + L++ P    F LE  +KP  +  ++ GV
Sbjct: 242 LGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGV 280

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 158 LLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVNKHTYL------LS 211
           LLR      S +  +I   P LL +  +  L+P L FLQS G ++      +      L 
Sbjct: 3   LLRSLGFTDSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILG 62

Query: 212 CSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFV-VGMGRDL 269
                 +     + +KI  +  + ++   ++P+        N  R ++    +G+   L
Sbjct: 63  KKGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKL 121

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	99.96
KOG1267	413	consensus Mitochondrial transcription termination	99.84
KOG1267	413	consensus Mitochondrial transcription termination	99.73
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.11
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.82
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	88.16

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.8e-45  Score=369.18  Aligned_cols=247  Identities=25%  Similarity=0.484  Sum_probs=181.8

Q ss_pred             CCCccHHHHHHHHhhCCC---ChhhHhhhCCCcccCCcc-CHHHHHHHHHhCCCChHHHHHHHHhCcccccccc------
Q 037691           79 SPHSEFQEKMLYLDSIGV---DFFSLINDHPPIVSASLN-DIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRA------  148 (337)
Q Consensus        79 ~~~~~l~~~v~fL~slG~---di~~ii~~~P~lL~~s~e-~l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~------  148 (337)
                      .++.++.|+++||.++|+   +++++|.++|.+|..+++ ++.++++||+++|++.++|++++.++|++|+++.      
T Consensus       119 ~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p  198 (487)
T PLN03196        119 SVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMST  198 (487)
T ss_pred             CHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHH
Confidence            344566666666666666   356666666666666654 3555555555555555555555555555555442      


Q ss_pred             -------------------------------cchhHHHHHHHHHhcCChhHHHHHHHhCccccccchhhchhhHHHHHhh
Q 037691          149 -------------------------------SDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQS  197 (337)
Q Consensus       149 -------------------------------~~l~~~v~fL~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L~~  197 (337)
                                                     ++++|+++||+ ++|++.++|.++|.++|++|+++++++++|++++|++
T Consensus       199 ~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~-~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~e  277 (487)
T PLN03196        199 SVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLE-SLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLE  277 (487)
T ss_pred             HHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHH-HcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHH
Confidence                                           34555555553 4555555666666666666666665556666666666


Q ss_pred             hCCcc------ccc-------------------------------------ccceeeccchhhHHHHHHHHHHcCCCHHH
Q 037691          198 MGIAE------VNK-------------------------------------HTYLLSCSVEDKLIPRLQYFQKIGFSKRE  234 (337)
Q Consensus       198 lG~~~------i~k-------------------------------------~P~iL~~s~~~~l~~kv~fL~~lG~s~~~  234 (337)
                      +|+++      +.+                                     +|++++++ +++|+++++||.++||+.++
T Consensus       278 lGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lS-e~kl~~kvefL~~~Gls~ed  356 (487)
T PLN03196        278 FGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLN-RNVALKHVEFLRGRGFSAQD  356 (487)
T ss_pred             cCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhccc-HHHHHHHHHHHHHcCCCHHH
Confidence            66542      122                                     34444444 45788899999999999999


Q ss_pred             HhHHHhcCCcccccChhhhHHHHHHHHHHhhCCChhHHhhcCcccccCccchhHHHHHHHHHcCCCCCchhhhccCHHHH
Q 037691          235 ATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQF  314 (337)
Q Consensus       235 i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~~~~~I~~~P~~L~~Sle~rI~pR~~~L~~~Gl~~~l~~ll~~se~~F  314 (337)
                      |..|++++|++|++|+ ++|++|++||+++||++.++|+++|++|+||+|+||+|||++|+++|+.++|.++|.+||++|
T Consensus       357 I~~mv~k~P~lL~~S~-~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~~~L~~kGl~~sL~~~L~~sd~~F  435 (487)
T PLN03196        357 VAKMVVRCPQILALNL-EIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKF  435 (487)
T ss_pred             HHHHHHhCCceeeccH-HHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHHHHHHHcCCCCCHHHHhccCHHHH
Confidence            9999999999999995 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHchhcCCCCCC
Q 037691          315 HRRLDVCCNSSMPL  328 (337)
Q Consensus       315 ~e~~~~~~~~~~p~  328 (337)
                      +++|+.+|.|--..
T Consensus       436 ~~r~v~~y~e~~~~  449 (487)
T PLN03196        436 EQRMSGDFIEGEEM  449 (487)
T ss_pred             HHHHhhhccccccc
Confidence            99999999774333

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=3.1e-39  Score=311.63  Aligned_cols=236  Identities=35%  Similarity=0.661  Sum_probs=180.9

Q ss_pred             CCCccHHHHHHHHhhCCC---ChhhHhhhCCCcccCCcc-CHHHHHHHHHhCCCChHHHHHHHHhCcccccccc-cchhH
Q 037691           79 SPHSEFQEKMLYLDSIGV---DFFSLINDHPPIVSASLN-DIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRA-SDILP  153 (337)
Q Consensus        79 ~~~~~l~~~v~fL~slG~---di~~ii~~~P~lL~~s~e-~l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~-~~l~~  153 (337)
                      +++..+.|+++||.++|+   |+++++.++|.++..+++ ++.+.++||+++|++++|+.+++.++|++|..+. +++.+
T Consensus        28 ~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~~d~~~~l~r~p~~l~~~~~~~l~~  107 (345)
T PF02536_consen   28 DPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLSDEDIVKVLKRYPRILSFSVEENLSP  107 (345)
T ss_dssp             -SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-HHHHHHHHHH-SHHHHS---HHHHH
T ss_pred             cCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCCHHHHHHHHHhcchhhccchHhhhhh
Confidence            688999999999999999   699999999999999965 6999999999999999999999999999999985 48999


Q ss_pred             HHHHHHHHhcCChhHHHHHHHhCc----------------------------------cccccchhhchhhHHHHHhhhC
Q 037691          154 VFTFLLREAKVNGSDLKRVISRRP----------------------------------RLLVSAVKTRLRPTLYFLQSMG  199 (337)
Q Consensus       154 ~v~fL~~~lGvs~~~v~~li~~~P----------------------------------~lL~~sv~~~l~~~v~~L~~lG  199 (337)
                      +++||+ ++|++.+.+.+++..+|                                  +++..+.++.++++++||+++|
T Consensus       108 ~v~~L~-~lGv~~~~~~~~l~~~~~~~~~~~~~~~~v~~l~~lG~~~~~~~~vi~~~P~~l~~~~~~~~~~~v~~L~~~G  186 (345)
T PF02536_consen  108 NVAFLR-SLGVPPSQIISLLISRPPLFLSSEKIKERVEFLKELGFDPEKIGRVIAKNPRLLLSDSESELKPKVEFLRSLG  186 (345)
T ss_dssp             HHHHHH-HTT--HHHHHHHHHH-CHHHHS-HHHHCHHHHHCCCTSSHHHHCCCHHHHHHHHCGSCCCCCHHHHHHHHHCT
T ss_pred             hhhHHh-hcCCcHHHHHHHHHhcCccccchhHHHHHHHHHHHhCCCchhhcccccccchhhccccHHHHHHHHHHHHhhc
Confidence            999995 67777664554444444                                  4444444456777777887777


Q ss_pred             Ccc------cccccceeeccc--------------------------------hhhHHHHHHHHHHcCCCHHHHhHHHhc
Q 037691          200 IAE------VNKHTYLLSCSV--------------------------------EDKLIPRLQYFQKIGFSKREATAMFRR  241 (337)
Q Consensus       200 ~~~------i~k~P~iL~~s~--------------------------------~~~l~~kv~fL~~lG~s~~~i~~ml~~  241 (337)
                      +++      +.++|.++.++.                                +++++++++||.++||+++|+++|+.+
T Consensus       187 ~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~~~l~~~i~~L~~lG~s~~ei~~mv~~  266 (345)
T PF02536_consen  187 FSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSEEKLKPKIEFLQSLGFSEEEIAKMVRR  266 (345)
T ss_dssp             T-GHHHHHHHHHTTTGGGCGCHC---------------------------THHHHHHHHHHHHHHTTT--HHHHHHHHHH
T ss_pred             ccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccchHhHHHHHHHHHHhcCcHHHHHHHHHh
Confidence            764      334454444433                                347999999999999999999999999


Q ss_pred             CCcccccChhhhHHHHHHHHHHhhCCChhHHhhcCcccccCccchhHHH---HHHHHHcC--CCCCchhhhccCHHHHHH
Q 037691          242 FPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPR---HQACVDKG--VCFPLNVLLKTSEAQFHR  316 (337)
Q Consensus       242 ~P~IL~~sle~~L~~k~~fL~~~mG~~~~~I~~~P~~L~~Sle~rI~pR---~~~L~~~G--l~~~l~~ll~~se~~F~e  316 (337)
                      +|+||++|+ +++++|++||+++||++.++|+++|++|+||+|+||+||   +++|+++|  ..+++.+++.+||++|++
T Consensus       267 ~P~iL~~s~-e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~l~~~g~~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  267 FPQILSYSI-EKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKVLKSKGLIINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             SGGGGGS-H-HHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHTT--TTTGGGGGS-HHHHHHHHHHT-
T ss_pred             Ccchhhcch-hhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHHHHHCcCCCCCCHHHHhhccHHHhcC
Confidence            999999995 679999999999999999999999999999999999999   66788999  668999999999999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.7e-34  Score=290.02  Aligned_cols=238  Identities=16%  Similarity=0.410  Sum_probs=207.9

Q ss_pred             CCCccHHHHHHHHhhCCCChhhHhhhCCCcccCCcc-CHHHHHHHHHhCCCChHHHHHHHHhCcccccccc-cchhHHHH
Q 037691           79 SPHSEFQEKMLYLDSIGVDFFSLINDHPPIVSASLN-DIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRA-SDILPVFT  156 (337)
Q Consensus        79 ~~~~~l~~~v~fL~slG~di~~ii~~~P~lL~~s~e-~l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~-~~l~~~v~  156 (337)
                      .+-+++.++++||+++|++-..+ .++|.+|.++++ ++.++++||+++|++..+|+++|.++|.+|..+. +++.|+++
T Consensus        87 ~~~~~~~~~l~~L~s~G~~~~~i-~~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~  165 (487)
T PLN03196         87 STVDVMRERVEFLHKLGLTIEDI-NEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVK  165 (487)
T ss_pred             ccHHHHHHHHHHHHHcCCChHHh-ccCcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHH
Confidence            57779999999999999976665 389999999997 6999999999999999999999999999999996 68999999


Q ss_pred             HHHHHhcCChhHHHHHHHhCccccccchhhchhhHHHHHhhhCCcc------cccccceeeccchhhHHHHHHHHHHcCC
Q 037691          157 FLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAE------VNKHTYLLSCSVEDKLIPRLQYFQKIGF  230 (337)
Q Consensus       157 fL~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L~~lG~~~------i~k~P~iL~~s~~~~l~~kv~fL~~lG~  230 (337)
                      || +.+|++.++|.+++.++|++|++++++++.++++||+++|+++      +.++|++|+++.+++|+++++||.++|+
T Consensus       166 fL-~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv  244 (487)
T PLN03196        166 YL-QGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGL  244 (487)
T ss_pred             HH-HHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCC
Confidence            99 4899999999999999999999999988999999999999985      6789999999988899999999999999


Q ss_pred             CHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhCCChhH----HhhcCcccccCccchhHHHHHHH-HHcCCC-----
Q 037691          231 SKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKE----LKEFPQYFSFSLENRIKPRHQAC-VDKGVC-----  300 (337)
Q Consensus       231 s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~~~~~----I~~~P~~L~~Sle~rI~pR~~~L-~~~Gl~-----  300 (337)
                      +.++|++++.++|++|+++++++++++++||. ++|++.+.    |.++|.+|++++++++.++..+| .+.|+.     
T Consensus       245 ~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~-elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~  323 (487)
T PLN03196        245 PRLAVARILEKRPYILGFDLEETVKPNVECLL-EFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFG  323 (487)
T ss_pred             CHHHHHHHHHhCCceeEcCHHHhHHHHHHHHH-HcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHH
Confidence            99999999999999999998779999999987 78988765    47788888888888888888877 356664     


Q ss_pred             ---CCchhhhccCHHHHHHHHc
Q 037691          301 ---FPLNVLLKTSEAQFHRRLD  319 (337)
Q Consensus       301 ---~~l~~ll~~se~~F~e~~~  319 (337)
                         ...+.++.+|+++..+++.
T Consensus       324 ~~v~k~P~il~lSe~kl~~kve  345 (487)
T PLN03196        324 RVIEKLPQIVSLNRNVALKHVE  345 (487)
T ss_pred             HHHHhcchhhcccHHHHHHHHH
Confidence               1355677777777666554

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=99.96  E-value=1.9e-29  Score=243.46  Aligned_cols=226  Identities=28%  Similarity=0.571  Sum_probs=178.7

Q ss_pred             HHHhhCCC---ChhhHhhhCCCcccCCccC-HHHHHHHHHhCCCChHHHHHHHHhCccccccc-ccchhHHHHHHHHHhc
Q 037691           89 LYLDSIGV---DFFSLINDHPPIVSASLND-IKSTVDLITSLDFAAAEFRRIVSMCPEILTSR-ASDILPVFTFLLREAK  163 (337)
Q Consensus        89 ~fL~slG~---di~~ii~~~P~lL~~s~e~-l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~-~~~l~~~v~fL~~~lG  163 (337)
                      ++|+++|+   +|.+++.++|.++.++.++ +.++++||++.|++..++++++++||++|..+ .+++.++++|| +.+|
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L-~~~~   80 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFL-KSIG   80 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHH-TTTS
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHH-HHHc
Confidence            57899999   6999999999999999985 99999999999999999999999999999999 67999999999 5899


Q ss_pred             CChhHHHHHHHhCccccccchhhchhhHHHHHhhhCCcc----------------------------------------c
Q 037691          164 VNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAE----------------------------------------V  203 (337)
Q Consensus       164 vs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L~~lG~~~----------------------------------------i  203 (337)
                      ++++++.+++.++|++|..+.++++.+++.+|+++|+++                                        +
T Consensus        81 ~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~~~v~~l~~lG~~~~~~~~vi  160 (345)
T PF02536_consen   81 LSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSSEKIKERVEFLKELGFDPEKIGRVI  160 (345)
T ss_dssp             S-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS-HHHHCHHHHHCCCTSSHHHHCCCH
T ss_pred             CCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccchhHHHHHHHHHHHhCCCchhhcccc
Confidence            999999999999999999988778999999999999874                                        1


Q ss_pred             ccccceeeccchhhHHHHHHHHHHcCCCHHHHhHHHhcCCcccccChhh-------------------------------
Q 037691          204 NKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKD-------------------------------  252 (337)
Q Consensus       204 ~k~P~iL~~s~~~~l~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~-------------------------------  252 (337)
                      .++|+++..+.++.++++++||+++|++.+++.+++.++|.++.+|+++                               
T Consensus       161 ~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~  240 (345)
T PF02536_consen  161 AKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSE  240 (345)
T ss_dssp             HHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THHH
T ss_pred             cccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccch
Confidence            2468777777788999999999999999999999999999999999754                               


Q ss_pred             -hHHHHHHHHHHhhCCChhHH----hhcCcccccCccchhHHHHHHHHH-cCCC----CCchhhhccCHH-HHHHH
Q 037691          253 -NYERKLNYFVVGMGRDLKEL----KEFPQYFSFSLENRIKPRHQACVD-KGVC----FPLNVLLKTSEA-QFHRR  317 (337)
Q Consensus       253 -~L~~k~~fL~~~mG~~~~~I----~~~P~~L~~Sle~rI~pR~~~L~~-~Gl~----~~l~~ll~~se~-~F~e~  317 (337)
                       +++++++||. ++|++.++|    .++|++|++|.++ ++++++||.+ .|+.    ...+.++.+|=+ +-.-|
T Consensus       241 ~~l~~~i~~L~-~lG~s~~ei~~mv~~~P~iL~~s~e~-l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR  314 (345)
T PF02536_consen  241 EKLKPKIEFLQ-SLGFSEEEIAKMVRRFPQILSYSIEK-LKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPR  314 (345)
T ss_dssp             HHHHHHHHHHH-TTT--HHHHHHHHHHSGGGGGS-HHH-HHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHH
T ss_pred             HhHHHHHHHHH-HhcCcHHHHHHHHHhCcchhhcchhh-hhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhH
Confidence             5899999997 699998774    8999999999995 9999999965 6775    355667776643 34434

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.84  E-value=6.6e-21  Score=188.90  Aligned_cols=161  Identities=30%  Similarity=0.526  Sum_probs=138.2

Q ss_pred             HHHHhCccccccc-ccchhHHHHHHHHHhcCChhHHHHHHHhCccccccchhhchhhHHHHHhhhCCcccccccceeecc
Q 037691          135 RIVSMCPEILTSR-ASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVNKHTYLLSCS  213 (337)
Q Consensus       135 ~ii~~~P~iL~~~-~~~l~~~v~fL~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L~~lG~~~i~k~P~iL~~s  213 (337)
                      +++.+.|.++.++ .+.+.+++++|. .+|++.++|..++.++|++|+++.++ +..+++++.+. ..++.++|+++.++
T Consensus       249 ~~~v~~~~~~~~~~~~~i~~kv~~l~-~~Gf~~~di~~~~~k~P~~l~~s~~~-~~~~~~~~~~~-~~~~~k~p~~l~~s  325 (413)
T KOG1267|consen  249 REFVKAPILLSYSSEKTLEPKVEVLK-SLGFSREEIWKMVKKCPQILGYSVKK-NLKTTEYLLKN-PKHILKFPQLLRSS  325 (413)
T ss_pred             hHHHhhhhhhcccccccHHHHHHHHH-HcCCCHHHHHHHHHhCchheEeehhh-hhHHHHHHHhc-chhhhhhhhhhhcc
Confidence            3444445555555 568999999994 78999999999999999999999984 55666666554 44588999999654


Q ss_pred             chhhHHHHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhCCChhHHhhcCcccccCccchhHHHHHH
Q 037691          214 VEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQA  293 (337)
Q Consensus       214 ~~~~l~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~~~~~I~~~P~~L~~Sle~rI~pR~~~  293 (337)
                       +..+.++++|+..+|++..|+.+|+.++|+++.+++++.++.+.+|+.+.|+++.++++.+|++++|++++|+.||+..
T Consensus       326 -~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y~le~ri~pr~~~  404 (413)
T KOG1267|consen  326 -EDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPLSALVSFPAFFGYSLEKRIRPRFNV  404 (413)
T ss_pred             -chhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchHHHHhccchhhccchhhcchhHHHH
Confidence             7899999999999999999999999999999999985599999999999999999999999999999999999999998


Q ss_pred             HHHcCC
Q 037691          294 CVDKGV  299 (337)
Q Consensus       294 L~~~Gl  299 (337)
                      ...+|.
T Consensus       405 ~~~~~~  410 (413)
T KOG1267|consen  405 IKKLGV  410 (413)
T ss_pred             HHHHhc
Confidence            877664

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.73  E-value=2.1e-17  Score=163.91  Aligned_cols=207  Identities=26%  Similarity=0.451  Sum_probs=150.3

Q ss_pred             cHHHHHHHHhhCCC---ChhhHhhhCCCcccCCccC-HHHHHHHHHhCCCChHHHHHHHHhCccccccc-ccchhHHHHH
Q 037691           83 EFQEKMLYLDSIGV---DFFSLINDHPPIVSASLND-IKSTVDLITSLDFAAAEFRRIVSMCPEILTSR-ASDILPVFTF  157 (337)
Q Consensus        83 ~l~~~v~fL~slG~---di~~ii~~~P~lL~~s~e~-l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~-~~~l~~~v~f  157 (337)
                      +-....++|+++|+   ++.+++..+|.++..+.++ +.++..+|++.|++..+++.+++..|.+|..+ .+++.+.++|
T Consensus        90 ~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~  169 (413)
T KOG1267|consen   90 NPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFIEF  169 (413)
T ss_pred             CcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHHHH
Confidence            44556669999999   4889999999999888875 78888899999999999999999999999987 4689999999


Q ss_pred             HHHHhc--CChhHHHHHHHhCccccccchhhchhhHHHHHhhhCCc----------------------------------
Q 037691          158 LLREAK--VNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIA----------------------------------  201 (337)
Q Consensus       158 L~~~lG--vs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L~~lG~~----------------------------------  201 (337)
                      +. .++  .....+.+++...|.......  .+. ++++++++|..                                  
T Consensus       170 l~-~~~~~~~~s~~~~~~~~~~~~~~~~~--~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~~l~~~~~~i~~~g~~  245 (413)
T KOG1267|consen  170 LK-SIPPELLSSVVERLLTPVPSFLLNEN--SVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYLKLKARLPFLLTLGFD  245 (413)
T ss_pred             hh-ccchhhhhhHHHHhcccccccccccc--ccc-cchhhHHhCCCHHHHHHHHhcCccceeeehhhhhhhhhHHHhccC
Confidence            85 553  455555555555552222211  122 34444444433                                  


Q ss_pred             c----cccccceeeccchhhHHHHHHHHHHcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhCCChhHHhhcCc
Q 037691          202 E----VNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQ  277 (337)
Q Consensus       202 ~----i~k~P~iL~~s~~~~l~~kv~fL~~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~~~~~I~~~P~  277 (337)
                      .    +.+.|.++.++.++++++++++|.++||+.+||..|+.++|++|++|. +++..++.|+.+.    .+++.++|+
T Consensus       246 p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~-~~~~~~~~~~~~~----~~~~~k~p~  320 (413)
T KOG1267|consen  246 PKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSV-KKNLKTTEYLLKN----PKHILKFPQ  320 (413)
T ss_pred             CchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeeh-hhhhHHHHHHHhc----chhhhhhhh
Confidence            1    234677777788999999999999999999999999999999999994 7666666666544    333666666


Q ss_pred             ccccCccchhHHHHHHHHHcCC
Q 037691          278 YFSFSLENRIKPRHQACVDKGV  299 (337)
Q Consensus       278 ~L~~Sle~rI~pR~~~L~~~Gl  299 (337)
                      ++.++.. .+.+|+++|...|.
T Consensus       321 ~l~~s~~-~l~~~ie~l~~~g~  341 (413)
T KOG1267|consen  321 LLRSSED-KLKPRIEFLLSLGF  341 (413)
T ss_pred             hhhccch-hhhhhHHHHHHcCC
Confidence            6655544 46666666666664

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.11  E-value=0.00039  Score=42.21  Aligned_cols=30  Identities=23%  Similarity=0.689  Sum_probs=23.3

Q ss_pred             HHHhcCCcccccChhhhHHHHHHHHHHhhCCC
Q 037691          237 AMFRRFPQLFNYSVKDNYERKLNYFVVGMGRD  268 (337)
Q Consensus       237 ~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~~  268 (337)
                      +++.++|+++.++ +++++++++||. ++|++
T Consensus         2 ~~~~~~P~il~~~-~~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYS-EKKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCccccc-HHHhhHHHHHHH-HcCCC
Confidence            4677888888888 688888888887 77764

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.82  E-value=0.00089  Score=40.56  Aligned_cols=28  Identities=25%  Similarity=0.568  Sum_probs=13.9

Q ss_pred             HhhhCCCcccCCccCHHHHHHHHHhCCC
Q 037691          101 LINDHPPIVSASLNDIKSTVDLITSLDF  128 (337)
Q Consensus       101 ii~~~P~lL~~s~e~l~~~v~~L~~lG~  128 (337)
                      ++.++|.++.++.++++++++||+++|+
T Consensus         3 ~~~~~P~il~~~~~~l~~~~~~l~~~g~   30 (31)
T smart00733        3 ILKKFPQILGYSEKKLKPKVEFLKELGF   30 (31)
T ss_pred             hhhhCcCcccccHHHhhHHHHHHHHcCC
Confidence            3445555555554445555555555544

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=88.16  E-value=1.8  Score=37.98  Aligned_cols=141  Identities=12%  Similarity=0.176  Sum_probs=66.7

Q ss_pred             HHHHHHhhCCC-ChhhHhhhCC-CcccCCccCH--HHHHHHHHhCCCChHHHHHHHHhCcc----cccccccchhHHHHH
Q 037691           86 EKMLYLDSIGV-DFFSLINDHP-PIVSASLNDI--KSTVDLITSLDFAAAEFRRIVSMCPE----ILTSRASDILPVFTF  157 (337)
Q Consensus        86 ~~v~fL~slG~-di~~ii~~~P-~lL~~s~e~l--~~~v~~L~~lG~s~~~i~~ii~~~P~----iL~~~~~~l~~~v~f  157 (337)
                      .++.|..+.|+ ....   +.+ .--.|+.+++  -..+..|+++|++-++|..++.....    +|....+.+...++-
T Consensus        16 ~tLRyYe~~GLl~p~~---r~~~gyR~Y~~~dl~rL~~I~~lr~~G~sL~eI~~ll~~~~~~~~~~L~~~~~~l~~ei~~   92 (172)
T cd04790          16 STLLYYERIGLLSPSA---RSESNYRLYGERDLERLEQICAYRSAGVSLEDIRSLLQQPGDDATDVLRRRLAELNREIQR   92 (172)
T ss_pred             HHHHHHHHCCCCCCCc---cCCCCCccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Confidence            35667778887 2211   111 2233454432  26677889999999999999976542    111111223333333


Q ss_pred             HHHHhcCChhHHHHHHHhCccccccchhhchhhHHHHHhhhCCcccc--cccceeeccchhhHHHHHHHHHHcCCCHHHH
Q 037691          158 LLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVN--KHTYLLSCSVEDKLIPRLQYFQKIGFSKREA  235 (337)
Q Consensus       158 L~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L~~lG~~~i~--k~P~iL~~s~~~~l~~kv~fL~~lG~s~~~i  235 (337)
                      |++    ..+.+..++...+.. ...-.-+....++.++..|+++-.  +-=.-|-.   ..=..-.+||.++|++++++
T Consensus        93 L~~----~~~~l~~ll~~~~~~-~~~~~V~~~~w~~l~~~~g~~~~~m~~wh~~fe~---~~p~~h~~~l~~~g~~~~~~  164 (172)
T cd04790          93 LRQ----QQRAIATLLKQPTLL-KEQRLVTKEKWVAILKAAGMDEADMRRWHIEFEK---MEPEAHQEFLQSLGIPEDEI  164 (172)
T ss_pred             HHH----HHHHHHHHHHHHhhc-cccccCCHHHHHHHHHHcCCChHHHHHHHHHHHH---hCcHHHHHHHHHcCCCHHHH
Confidence            321    122344444332222 111001123445556667765411  00000000   01123467888888888887


Q ss_pred             hH
Q 037691          236 TA  237 (337)
Q Consensus       236 ~~  237 (337)
                      ..
T Consensus       165 ~~  166 (172)
T cd04790         165 ER  166 (172)
T ss_pred             HH
Confidence            64

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	337
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	1e-37
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	6e-16
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-06
3mva_O	343	Transcription termination factor, mitochondrial; a	1e-28
3mva_O	343	Transcription termination factor, mitochondrial; a	3e-24
3mva_O	343	Transcription termination factor, mitochondrial; a	4e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  134 bits (339), Expect = 1e-37
 Identities = 45/251 (17%), Positives = 90/251 (35%), Gaps = 44/251 (17%)

Query: 79  SPHSEFQEKMLYLDSIGV---DFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRR 135
               + ++ +L+L  +G+      + +  +  I S  L ++K+ V  + S +F+ A+  +
Sbjct: 36  DFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQ 95

Query: 136 IVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFL 195
           +V   P +L      +     F  +E +++    + ++ R PR                 
Sbjct: 96  MVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPR----------------- 138

Query: 196 QSMGIAEVNKHTYLLSCSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYE 255
                        LL+ S+E        Y  ++GF   E   M  R P++   + K    
Sbjct: 139 -------------LLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN-KMKLT 184

Query: 256 RKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRH---------QACVDKGVCFPLNVL 306
              ++    M      + +FPQ F+  L  ++K RH         Q    K     L+ L
Sbjct: 185 ETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKL 243

Query: 307 LKTSEAQFHRR 317
           +   +  F   
Sbjct: 244 VSIPDEIFCEE 254

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 75.6 bits (186), Expect = 6e-16
 Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 12/152 (7%)

Query: 158 LLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAE------VNKHTYLLS 211
            L    V+ S +++       LL    +  ++  L FL+ +GI +      + K+  + S
Sbjct: 11  KLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFS 70

Query: 212 CSVEDKLIPRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYF--VVGMGRD- 268
             +E  L  R+ Y     FSK +   M R+ P L N+SV+   + +L +F   + +    
Sbjct: 71  EDLE-NLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKK 128

Query: 269 -LKELKEFPQYFSFSLENRIKPRHQACVDKGV 299
               +   P+  + SLE   +      ++ G 
Sbjct: 129 TRDLVVRLPRLLTGSLEPVKENMKVYRLELGF 160

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 4/83 (4%)

Query: 220 PRLQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFV-VGMGRD--LKELKEFP 276
             LQ    +G    +          L     + + ++ L +   VG+  +     L +  
Sbjct: 7   ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 66

Query: 277 QYFSFSLENRIKPRHQACVDKGV 299
             FS  LEN +K R      K  
Sbjct: 67  AIFSEDLEN-LKTRVAYLHSKNF 88

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  112 bits (282), Expect = 1e-28
 Identities = 34/260 (13%), Positives = 90/260 (34%), Gaps = 27/260 (10%)

Query: 82  SEFQEKMLYLDSIGV---DFFSLINDHPPIVSASLND--IKSTVDLITSLDFAAAEFRRI 136
               ++      I     +  +++   P     S N+  +++ +  + S+        R+
Sbjct: 84  ENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRL 143

Query: 137 VSMCPEILTSRASDILPVFTFLLREAKVNGS-----DLKRVISRRPRLLVSAVKTRLRPT 191
           ++  P   ++       +  FL       G       ++++I + P +L+ + K R++  
Sbjct: 144 LTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTK-RVKAN 202

Query: 192 LYFLQSMGIAEVNKHTYLLSC-----------SVEDKLIPRLQYFQKIGFSKREATAMFR 240
           + FL+S       +   L+                       +    +G ++ E      
Sbjct: 203 IEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVL 262

Query: 241 RFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVC 300
            +P +   +    +  K++  +      + ++ E P+    S+   +K R +  V+ G  
Sbjct: 263 SYPDVIFLAE-KKFNDKIDCLM-EENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCN 319

Query: 301 F--PLNVLLKTSEAQFHRRL 318
                  LL  S+ ++  +L
Sbjct: 320 LSTLNITLLSWSKKRYEAKL 339

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  100 bits (249), Expect = 3e-24
 Identities = 31/228 (13%), Positives = 74/228 (32%), Gaps = 21/228 (9%)

Query: 79  SPHSEFQEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVS 138
           S   + ++ +  L ++GVD        P +    + + +     + S   +      I+S
Sbjct: 14  SEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIIS 73

Query: 139 MCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPR-LLVSAVKTRLRPTLYFLQS 197
             P  +T    ++   +    R+   +  ++  ++ R P     S     L   + FL S
Sbjct: 74  RYPRAITRTPENLSKRWDL-WRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYS 132

Query: 198 MGIAE------VNKHTYLLSCSVEDKLIPRLQYFQKIGFS------KREATAMFRRFPQL 245
           +G+        +       S S++      +++ Q  G S            +  + P +
Sbjct: 133 VGLTRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFI 191

Query: 246 FNYSVKDNYERKLNYFVVGMGRDLKEL-----KEFPQYFSFSLENRIK 288
              S K   +  + +       + +EL         +    S +   +
Sbjct: 192 LIQSTK-RVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARR 238

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 65.0 bits (158), Expect = 4e-12
 Identities = 25/197 (12%), Positives = 64/197 (32%), Gaps = 18/197 (9%)

Query: 109 VSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSD 168
              + ++     DL+ +L     +        P +     ++   +  F L     +   
Sbjct: 9   CHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMF-LLSKGASKEV 67

Query: 169 LKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAE------VNKHTYLLSCSVEDK-LIPR 221
           +  +ISR PR +    +  L       + +  ++      + +       S  +  L   
Sbjct: 68  IASIISRYPRAITRTPE-NLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENN 126

Query: 222 LQYFQKIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEF------ 275
           +++   +G +++    +    P+ F+ S+  N +        G+     +  +F      
Sbjct: 127 IKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIF 186

Query: 276 --PQYFSFSLENRIKPR 290
             P     S + R+K  
Sbjct: 187 KNPFILIQSTK-RVKAN 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 7e-05
 Identities = 32/278 (11%), Positives = 73/278 (26%), Gaps = 81/278 (29%)

Query: 117 KSTVDLITSLDFAAAEFRRIVSMCPEI--LT----SRASDILPVFTFLLREAKVNGSDLK 170
           K+   +          ++    M  +I  L     +    +L +   LL +   N +   
Sbjct: 163 KTW--VALD---VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 171 RVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVNKHTYL---------------LSC--- 212
              S   +L + +++  LR     L+S    +  ++  L               LSC   
Sbjct: 218 D-HSSNIKLRIHSIQAELR---RLLKS----KPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 213 ------SVEDKLIPRLQY-----FQKIGFSKREATAMFRRFPQLFNYSVKD--NYERKLN 259
                  V D L              +  +  E  ++  ++    +   +D        N
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY---LDCRPQDLPREVLTTN 326

Query: 260 YFVVGM-GRDLKELKEFPQYF------------SFSLEN----RIKPRHQACV--DKGVC 300
              + +    +++       +              SL        +              
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 301 FPLNVL------LKTSEAQFHRRLDVCCNSSMPLTKSP 332
            P  +L      +  S+      ++     S+ + K P
Sbjct: 387 IPTILLSLIWFDVIKSDVM--VVVNKLHKYSL-VEKQP 421

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	99.98
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	99.96
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.91
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.47
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.45
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	80.22

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=1.8e-43  Score=329.52  Aligned_cols=237  Identities=19%  Similarity=0.340  Sum_probs=215.8

Q ss_pred             cHHHHHHHHhhCCCChhhHhhhCCCc----ccCCcc-CHHHHHHHHHhCCCChHHHHHHHHhCcccccccccchhHHHHH
Q 037691           83 EFQEKMLYLDSIGVDFFSLINDHPPI----VSASLN-DIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTF  157 (337)
Q Consensus        83 ~l~~~v~fL~slG~di~~ii~~~P~l----L~~s~e-~l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~~~l~~~v~f  157 (337)
                      +-.++++||.++|++..++ .++|.+    +.++++ +++++++||+++|++.++|+++++++|++|.++.+++.++++|
T Consensus         4 ~~s~~l~~L~~lGv~~~~i-~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~l~p~v~~   82 (270)
T 3m66_A            4 DHSETLQKLVLLGVDLSKI-EKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAY   82 (270)
T ss_dssp             HHHHHHHHHHHTTCCHHHH-TTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHHHHHHHHH
T ss_pred             cchHHHHHHHHcCCCHHHH-hhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHH
Confidence            4568999999999987775 455666    999987 7999999999999999999999999999999997679999999


Q ss_pred             HHHHhcCChhHHHHHHHhCccccccchhhchhhHHHHH-hhhCCcc------cccccceeeccchhhHHHHHHHH-HHcC
Q 037691          158 LLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFL-QSMGIAE------VNKHTYLLSCSVEDKLIPRLQYF-QKIG  229 (337)
Q Consensus       158 L~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L-~~lG~~~------i~k~P~iL~~s~~~~l~~kv~fL-~~lG  229 (337)
                      |+ ++|++.++|.+++.++|++|+++++ +++++++|| +++|+++      +.++|++++.+. +.++++++++ .++|
T Consensus        83 L~-~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~-e~~~~~v~~l~~~~G  159 (270)
T 3m66_A           83 LH-SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSL-EPVKENMKVYRLELG  159 (270)
T ss_dssp             HH-HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCS-HHHHHHHHHHHHTSC
T ss_pred             HH-HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeech-HHHHHHHHHHHHHcC
Confidence            95 8999999999999999999999998 599999999 5799985      678999999985 6899999986 5899


Q ss_pred             CCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhCCChhHHhhcCcccccCccchhHHHHHHHHH---cCCC------
Q 037691          230 FSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVD---KGVC------  300 (337)
Q Consensus       230 ~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~~~~~I~~~P~~L~~Sle~rI~pR~~~L~~---~Gl~------  300 (337)
                      |+.+||.+|+.++|++|++| +++|++|++||+++||++.++|+++|.+|+||+| ||+|||++|+.   +|+.      
T Consensus       160 ~s~~ei~~~v~~~P~il~~s-~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~  237 (270)
T 3m66_A          160 FKHNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNY  237 (270)
T ss_dssp             CCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSC
T ss_pred             CCHHHHHHHHHhCChhheec-HHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCC
Confidence            99999999999999999999 5999999999999999999999999999999999 99999998776   4542      


Q ss_pred             CCchhhhccCHHHHHHHHchhcCCC
Q 037691          301 FPLNVLLKTSEAQFHRRLDVCCNSS  325 (337)
Q Consensus       301 ~~l~~ll~~se~~F~e~~~~~~~~~  325 (337)
                      ++|.+++.+||++|+++|++.+.|+
T Consensus       238 ~~L~~~l~~sd~~F~~~~~~~~~ee  262 (270)
T 3m66_A          238 ISLDKLVSIPDEIFCEEIAKASVQD  262 (270)
T ss_dssp             CCHHHHHHSCHHHHHHHTTCSCHHH
T ss_pred             CCHHHHhcCCHHHHHHHHhcCCHHH
Confidence            5788899999999999999887653

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=5.5e-42  Score=330.17  Aligned_cols=234  Identities=18%  Similarity=0.345  Sum_probs=210.7

Q ss_pred             ccHHHHHHHHhhCCC---ChhhHhhhCCCcccCCccCHHHHHHHHHhCCCChHHHHHHHHhCcc-ccccccc-chhHHHH
Q 037691           82 SEFQEKMLYLDSIGV---DFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPE-ILTSRAS-DILPVFT  156 (337)
Q Consensus        82 ~~l~~~v~fL~slG~---di~~ii~~~P~lL~~s~e~l~~~v~~L~~lG~s~~~i~~ii~~~P~-iL~~~~~-~l~~~v~  156 (337)
                      ++.+++++||.++|+   |+++++.++|.+|.++++++.++++||+++|+++++++++|.++|+ +++...+ ++.++++
T Consensus        49 ~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~  128 (343)
T 3mva_O           49 TNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIK  128 (343)
T ss_dssp             CCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHH
Confidence            466788899999999   5999999999999999889999999999999999999999999999 5555554 8999999


Q ss_pred             HHHHHhcCChhHHHHHHHhCccccccchhhchhhHHHHHhhhCCc------c------cccccceeeccchhhHHHHHHH
Q 037691          157 FLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIA------E------VNKHTYLLSCSVEDKLIPRLQY  224 (337)
Q Consensus       157 fL~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L~~lG~~------~------i~k~P~iL~~s~~~~l~~kv~f  224 (337)
                      ||+ ++|++.++|.+++.++|++|++++++ +++++++|+++|++      +      +.++|.+++++ +++++++++|
T Consensus       129 fL~-~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~f  205 (343)
T 3mva_O          129 FLY-SVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEF  205 (343)
T ss_dssp             HHH-HTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHH
T ss_pred             HHH-HhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHH
Confidence            995 89999999999999999999999985 59999999987763      2      45678887776 6677766666


Q ss_pred             HH-----------------------------------------HcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHH
Q 037691          225 FQ-----------------------------------------KIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVV  263 (337)
Q Consensus       225 L~-----------------------------------------~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~  263 (337)
                      |+                                         ++||+++|+.+|+.++|+||++|. ++|++|++||.+
T Consensus       206 L~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~-~~l~~k~~fl~~  284 (343)
T 3mva_O          206 LRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAE-KKFNDKIDCLME  284 (343)
T ss_dssp             HHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCH-HHHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccH-HHHHHHHHHHHH
Confidence            66                                         479999999999999999999995 789999999997


Q ss_pred             hhCCChhHHhhcCcccccCccchhHHHHHHHHHcCCCCCch--hhhccCHHHHHHHHchh
Q 037691          264 GMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLN--VLLKTSEAQFHRRLDVC  321 (337)
Q Consensus       264 ~mG~~~~~I~~~P~~L~~Sle~rI~pR~~~L~~~Gl~~~l~--~ll~~se~~F~e~~~~~  321 (337)
                       ||++.++|+++|++|+||+| ||+|||++|+++|+++++.  +||.+||++|.++|.+-
T Consensus       285 -mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~~~g~~~~~~~~~~l~~s~~~F~~~~~~~  342 (343)
T 3mva_O          285 -ENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKKL  342 (343)
T ss_dssp             -TTCCHHHHHHSGGGGGSCHH-HHHHHHHHHHTTTCCSSSSCGGGGGSCHHHHHHHHHHT
T ss_pred             -cCCCHHHHHhCCHHHhcCHH-HHHHHHHHHHHCCCCCCCCcchhhcCCHHHHHHHHhcc
Confidence             99999999999999999999 9999999999999998888  99999999999999763

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=4.4e-35  Score=280.17  Aligned_cols=199  Identities=19%  Similarity=0.336  Sum_probs=180.6

Q ss_pred             CHHHHHHHHHhCCCChHHHHHHHHhCcccccccccchhHHHHHHHHHhcCChhHHHHHHHhCccccccchhhchhhHHHH
Q 037691          115 DIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYF  194 (337)
Q Consensus       115 ~l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~~~l~~~v~fL~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~  194 (337)
                      +++..+..|+++|+++++|+++++++|+++..   ++.+++.||. .+|++.++|+++|.++|++|+++++ +|+++++|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~---~l~~~i~~L~-~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ---QLLDIISEFI-LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH---HHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh---HHHHHHHHHH-HcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            47788889999999999999999999998755   4778899994 7999999999999999999999997 69999999


Q ss_pred             HhhhCCcc------cccccceeeccchhhHHHHHHHHH-HcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhCC
Q 037691          195 LQSMGIAE------VNKHTYLLSCSVEDKLIPRLQYFQ-KIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGR  267 (337)
Q Consensus       195 L~~lG~~~------i~k~P~iL~~s~~~~l~~kv~fL~-~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~  267 (337)
                      |+++|+++      +.++|++++++. +.++.++.+|. ++||+.++|.+||.++|+||++| +++|++|++||+++||+
T Consensus       120 L~~lGl~~~~i~~ll~~~P~lL~~s~-e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~Mgl  197 (335)
T 4fp9_B          120 LQKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLRED-LGQLEYKFQYAYFRMGI  197 (335)
T ss_dssp             HHHTTCTTTTHHHHHHHCGGGGTSCH-HHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTTCC
T ss_pred             HHHcCCCHHHHHHHHHhCchhhccCh-HHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHhCC
Confidence            99999974      678999999984 68999999997 79999999999999999999999 58999999999999999


Q ss_pred             ChhHHhhcCcccccCccchhHHHHHHHHHcCCC-------------CCchhhhccCHHHHHHHHchhc
Q 037691          268 DLKELKEFPQYFSFSLENRIKPRHQACVDKGVC-------------FPLNVLLKTSEAQFHRRLDVCC  322 (337)
Q Consensus       268 ~~~~I~~~P~~L~~Sle~rI~pR~~~L~~~Gl~-------------~~l~~ll~~se~~F~e~~~~~~  322 (337)
                      +.++|++ |.+|+||++ ||+|||.||+++|++             ++|.+++..||+.|++++...+
T Consensus       198 ~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s  263 (335)
T 4fp9_B          198 KHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTS  263 (335)
T ss_dssp             CHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCC
T ss_pred             CHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcC
Confidence            9999997 999999999 999999999999983             3689999999999999987654

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=99.98  E-value=2.9e-32  Score=262.36  Aligned_cols=231  Identities=13%  Similarity=0.237  Sum_probs=194.0

Q ss_pred             HHHHHHhhCCCChhhHhhhCCCcccCCccCHHHHHHHHHhCCCChHHHHHHHHhCcccccccccchhHHHHHHHHHhcCC
Q 037691           86 EKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVN  165 (337)
Q Consensus        86 ~~v~fL~slG~di~~ii~~~P~lL~~s~e~l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~~~l~~~v~fL~~~lGvs  165 (337)
                      .+++||.++|+++.++++++|.++..++++.+++++||+++|++.++|++++.++|++|..+.+++.++++||+ .+|++
T Consensus        21 ~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~-~lG~s   99 (343)
T 3mva_O           21 DLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWR-KIVTS   99 (343)
T ss_dssp             CHHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHT-TTSSC
T ss_pred             HHHHHHHHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHH-HcCCC
Confidence            45559999999999999999999999999999999999999999999999999999999999889999999995 89999


Q ss_pred             hhHHHHHHHhCccc-cccchhhchhhHHHHHhhhCCcc------cccccceeeccchhhHHHHHHHHHHcCCC------H
Q 037691          166 GSDLKRVISRRPRL-LVSAVKTRLRPTLYFLQSMGIAE------VNKHTYLLSCSVEDKLIPRLQYFQKIGFS------K  232 (337)
Q Consensus       166 ~~~v~~li~~~P~l-L~~sv~~~l~~~v~~L~~lG~~~------i~k~P~iL~~s~~~~l~~kv~fL~~lG~s------~  232 (337)
                      ++++.++|.++|++ +.++.+++++++++||+++|+++      +.++|++++.+.+ .+++++++|+++|++      .
T Consensus       100 ~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e-~~~~~v~~L~~lgv~~g~~~p~  178 (343)
T 3mva_O          100 DLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQAAGLSLGHNDPA  178 (343)
T ss_dssp             HHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHHHHHHTTCSCHH
T ss_pred             HHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHH-HhhHHHHHHHHhCCCcCCCcHH
Confidence            99999999999994 55554448999999999999985      5689999999865 559999999977664      7


Q ss_pred             HHHhHHHhcCCcccccChhhhHHHHHHHHHHh----------------------------------------hCCChhH-
Q 037691          233 REATAMFRRFPQLFNYSVKDNYERKLNYFVVG----------------------------------------MGRDLKE-  271 (337)
Q Consensus       233 ~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~----------------------------------------mG~~~~~-  271 (337)
                      +.|.+|+.++|.+|++| +++++++++||.++                                        +|++.++ 
T Consensus       179 ~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev  257 (343)
T 3mva_O          179 DFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEV  257 (343)
T ss_dssp             HHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred             HHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            88999999999999999 89999999999853                                        4555554 


Q ss_pred             ---HhhcCcccccCccchhHHHHHHHHHcCCC----CCchhhhccCHHHHHHHHch
Q 037691          272 ---LKEFPQYFSFSLENRIKPRHQACVDKGVC----FPLNVLLKTSEAQFHRRLDV  320 (337)
Q Consensus       272 ---I~~~P~~L~~Sle~rI~pR~~~L~~~Gl~----~~l~~ll~~se~~F~e~~~~  320 (337)
                         +.++|.+|++|.++ |+++++||.+.|+.    ...+.++..|-++-..|+..
T Consensus       258 ~~~v~~~P~il~~s~~~-l~~k~~fl~~mg~~~~~i~~~P~~l~~sleri~~R~~~  312 (343)
T 3mva_O          258 QKFVLSYPDVIFLAEKK-FNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIKE  312 (343)
T ss_dssp             HHHHHTCGGGGGSCHHH-HHHHHHHHHTTTCCHHHHHHSGGGGGSCHHHHHHHHHH
T ss_pred             HHHHHhCCchhcccHHH-HHHHHHHHHHcCCCHHHHHhCCHHHhcCHHHHHHHHHH
Confidence               36777777777763 77777777777765    34556666666666555543

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=99.96  E-value=6.2e-29  Score=231.34  Aligned_cols=181  Identities=17%  Similarity=0.387  Sum_probs=167.1

Q ss_pred             CCCCccHHHHHHHHhhCCC---ChhhHhhhCCCcccCCccCHHHHHHHHHhCCCChHHHHHHHHhCcccccccccchhHH
Q 037691           78 NSPHSEFQEKMLYLDSIGV---DFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPV  154 (337)
Q Consensus        78 ~~~~~~l~~~v~fL~slG~---di~~ii~~~P~lL~~s~e~l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~~~l~~~  154 (337)
                      .+++.+++++++||.++|+   ++++++.++|.++.+++++++++++||+++|++.++|++++.++|++|+.+.++++++
T Consensus        35 ~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~  114 (270)
T 3m66_A           35 LDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNR  114 (270)
T ss_dssp             CCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHH
T ss_pred             cChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHH
Confidence            3567799999999999999   5999999999999999999999999999999999999999999999999998889999


Q ss_pred             HHHHHHHhcCChhHHHHHHHhCccccccchhhchhhHHHHH-hhhCCcc------cccccceeeccchhhHHHHHHHHH-
Q 037691          155 FTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFL-QSMGIAE------VNKHTYLLSCSVEDKLIPRLQYFQ-  226 (337)
Q Consensus       155 v~fL~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L-~~lG~~~------i~k~P~iL~~s~~~~l~~kv~fL~-  226 (337)
                      ++||++++|++++++.+++.++|++++++.+ .++++++++ +++|+++      +.++|++++++. ++++++++||. 
T Consensus       115 v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~-~~l~~k~~fL~~  192 (270)
T 3m66_A          115 LGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGFKHNEIQHMITRIPKMLTANK-MKLTETFDFVHN  192 (270)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecH-HHHHHHHHHHHH
Confidence            9999768999999999999999999999998 699999975 6899985      578999999984 89999999997 


Q ss_pred             HcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhC
Q 037691          227 KIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMG  266 (337)
Q Consensus       227 ~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG  266 (337)
                      ++|++.++|.    ++|++|++|+| +|++|+.|+. .+|
T Consensus       193 ~mg~~~~~i~----~~P~~l~~Sle-ri~pR~~~l~-~L~  226 (270)
T 3m66_A          193 VMSIPHHIIV----KFPQVFNTRLF-KVKERHLFLT-YLG  226 (270)
T ss_dssp             TSCCCHHHHH----HCGGGGGSCHH-HHHHHHHHHH-HHT
T ss_pred             HhCCCHHHHH----hCchHhhCCHH-HHHHHHHHHH-Hhh
Confidence            7999998765    89999999985 9999999996 454

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.91  E-value=3.7e-24  Score=204.57  Aligned_cols=174  Identities=15%  Similarity=0.241  Sum_probs=159.0

Q ss_pred             ccHHHHHHHHhhCCC---ChhhHhhhCCCcccCCccCHHHHHHHHHhCCCChHHHHHHHHhCcccccccccchhHHHHHH
Q 037691           82 SEFQEKMLYLDSIGV---DFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFL  158 (337)
Q Consensus        82 ~~l~~~v~fL~slG~---di~~ii~~~P~lL~~s~e~l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~~~l~~~v~fL  158 (337)
                      ..+++.+..|.++||   ++++++.++|.++.   .++.+++.+|..+|++.++|+++|.++|++|+.++++++++++||
T Consensus        44 ~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~---~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL  120 (335)
T 4fp9_B           44 LELERVMSSLLDMGFSNAHINELLSVRRGASL---QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYL  120 (335)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH---HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHCCCCHHHHHHHHHhCcccch---hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHH
Confidence            467899999999999   58999999999864   457899999999999999999999999999999999999999999


Q ss_pred             HHHhcCChhHHHHHHHhCccccccchhhchhhHHHHHh-hhCCcc------cccccceeeccchhhHHHHHHHHH-HcCC
Q 037691          159 LREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQ-SMGIAE------VNKHTYLLSCSVEDKLIPRLQYFQ-KIGF  230 (337)
Q Consensus       159 ~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L~-~lG~~~------i~k~P~iL~~s~~~~l~~kv~fL~-~lG~  230 (337)
                      + .+|++..++.+++.++|++|+++.+ .+..++.+|+ ++|+++      +.++|++|.++ .+.|++|++||. ++|+
T Consensus       121 ~-~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~Mgl  197 (335)
T 4fp9_B          121 Q-KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLRED-LGQLEYKFQYAYFRMGI  197 (335)
T ss_dssp             H-HTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTTCC
T ss_pred             H-HcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHhCC
Confidence            5 7999999999999999999999998 6889999886 699985      67999999998 679999999999 8999


Q ss_pred             CHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhCCC
Q 037691          231 SKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRD  268 (337)
Q Consensus       231 s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~~  268 (337)
                      +.++|.+     |++|+||+ ++|++|+.||. .+|.-
T Consensus       198 ~~~eIvk-----P~~l~ySL-eRIkpRH~fL~-~lG~~  228 (335)
T 4fp9_B          198 KHPDIVK-----SEYLQYSL-TKIKQRHIYLE-RLGRY  228 (335)
T ss_dssp             CHHHHHH-----TTGGGSCH-HHHHHHHHHHH-HHTSC
T ss_pred             CHHHccc-----cchhhccH-HHHHHHHHHHH-HcCCc
Confidence            9999863     99999998 59999999997 79883

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.47  E-value=1.8e-12  Score=108.17  Aligned_cols=153  Identities=22%  Similarity=0.364  Sum_probs=134.2

Q ss_pred             HhcCChhHHHHHHHhCccccccchhhchhhHHHHHhhhCCcc------cccccceeeccchhhHHHHHHHHH-HcCCCHH
Q 037691          161 EAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAE------VNKHTYLLSCSVEDKLIPRLQYFQ-KIGFSKR  233 (337)
Q Consensus       161 ~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L~~lG~~~------i~k~P~iL~~s~~~~l~~kv~fL~-~lG~s~~  233 (337)
                      -+|++++-++-++.+.|++|...+- .++.+-.||+.+|+.+      +--+|.++... ...+...+..|. ++-|+..
T Consensus        42 llglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmr-qqdindtvrllkekclftvq  119 (239)
T 4fzv_B           42 LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMR-QQDINDTVRLLKEKCLFTVQ  119 (239)
T ss_dssp             HHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSC-HHHHHHHHHHHHHHSCCCHH
T ss_pred             hhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHH-HhhHhHHHHHHHHhHHhhHH
Confidence            5899999999999999999998886 6888889999988876      23478888775 578889999998 6889999


Q ss_pred             HHhHHHhcCCcccccChhhhHHHHHHHHHHhhCCChhHHhhcCcccccCccchhHHHHHHHHHcCCC-------------
Q 037691          234 EATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVC-------------  300 (337)
Q Consensus       234 ~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~~~~~I~~~P~~L~~Sle~rI~pR~~~L~~~Gl~-------------  300 (337)
                      ++.+++..+|.++.-++ ..++.|++|-.-.||+..-+|++. .+|.||+. +|+.|+-+|.+.|.+             
T Consensus       120 qvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivks-eylqyslt-kikqrhiylerlgryqtpdkkgqtqipn  196 (239)
T 4fzv_B          120 QVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPN  196 (239)
T ss_dssp             HHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCC
T ss_pred             HHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhHH-HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCC
Confidence            99999999999999997 899999999888999999999884 79999998 699999999999973             


Q ss_pred             CCchhhhccCHHHHHHHH
Q 037691          301 FPLNVLLKTSEAQFHRRL  318 (337)
Q Consensus       301 ~~l~~ll~~se~~F~e~~  318 (337)
                      +-+..+++.||.+|+++-
T Consensus       197 pllkdilrvseaeflart  214 (239)
T 4fzv_B          197 PLLKDILRVSEAEFLART  214 (239)
T ss_dssp             CCHHHHHTSCHHHHHHHT
T ss_pred             hHHHHHHHHhHHHHHHHH
Confidence            246789999999999874

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.45  E-value=1.1e-06  Score=73.37  Aligned_cols=142  Identities=15%  Similarity=0.291  Sum_probs=118.6

Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHhCcccccccccchhHHHHHHHHHhcCChhHHHHHHHhCccccccchhhchhhHHHHH
Q 037691          116 IKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFL  195 (337)
Q Consensus       116 l~~~v~~L~~lG~s~~~i~~ii~~~P~iL~~~~~~l~~~v~fL~~~lGvs~~~v~~li~~~P~lL~~sv~~~l~~~v~~L  195 (337)
                      +-..+.-+.-+|++++-++.++.+.|.+|....-.+..+-.||+ .+|+.+..+.+++-.+|.++++... ++...+..|
T Consensus        33 lldiisefillglnpepvcvvlkkspqllklpimqmrkrssylq-klglgegklkrvlyccpeiftmrqq-dindtvrll  110 (239)
T 4fzv_B           33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQ-KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLL  110 (239)
T ss_dssp             TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHHHHHHHHHHH-HHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHHHHHHHHHHH-HhCCCccchhhheecCcHHHHHHHh-hHhHHHHHH
Confidence            33455566668999999999999999999998888999999995 7999999999999999999999876 688899999


Q ss_pred             hh-hCCc--c----cccccceeeccchhhHHHHHHHHH-HcCCCHHHHhHHHhcCCcccccChhhhHHHHHHHHHHhhCC
Q 037691          196 QS-MGIA--E----VNKHTYLLSCSVEDKLIPRLQYFQ-KIGFSKREATAMFRRFPQLFNYSVKDNYERKLNYFVVGMGR  267 (337)
Q Consensus       196 ~~-lG~~--~----i~k~P~iL~~s~~~~l~~kv~fL~-~lG~s~~~i~~ml~~~P~IL~~sle~~L~~k~~fL~~~mG~  267 (337)
                      ++ +-++  .    +..+|.++..+. ..++-+++|-. ++|+...+|.+     ..-+.||+ .+++.+.-|+. .+|.
T Consensus       111 kekclftvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk-----seylqysl-tkikqrhiyle-rlgr  182 (239)
T 4fzv_B          111 KEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK-----SEYLQYSL-TKIKQRHIYLE-RLGR  182 (239)
T ss_dssp             HHHSCCCHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH-----TTGGGSCH-HHHHHHHHHHH-HHTC
T ss_pred             HHhHHhhHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH-----HHHHHHHH-HHHHHHHhHHH-Hhcc
Confidence            87 3343  2    346899998875 68999999988 89999998864     46789997 89999999995 7876

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=80.22  E-value=1.8  Score=29.64  Aligned_cols=25  Identities=24%  Similarity=0.489  Sum_probs=22.6

Q ss_pred             hHHHHHHHHHHcCCCHHHHhHHHhc
Q 037691          217 KLIPRLQYFQKIGFSKREATAMFRR  241 (337)
Q Consensus       217 ~l~~kv~fL~~lG~s~~~i~~ml~~  241 (337)
                      .+..|++||++-|++.+||..++.+
T Consensus        29 p~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           29 PLATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             CHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            4789999999999999999988876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00